Query 019144
Match_columns 345
No_of_seqs 120 out of 1286
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 07:03:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019144.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019144hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1794 N-Acetylglucosamine ki 100.0 2.4E-40 5.2E-45 300.2 28.3 308 21-340 2-317 (336)
2 COG2971 Predicted N-acetylgluc 100.0 2.4E-36 5.1E-41 278.8 32.5 292 20-343 3-295 (301)
3 TIGR00744 ROK_glcA_fam ROK fam 100.0 2.5E-35 5.4E-40 281.4 22.3 277 25-343 1-314 (318)
4 PRK13310 N-acetyl-D-glucosamin 100.0 2.7E-34 5.8E-39 272.8 22.4 273 23-339 1-302 (303)
5 COG1940 NagC Transcriptional r 100.0 1.1E-33 2.5E-38 269.7 22.9 282 18-342 2-310 (314)
6 PF01869 BcrAD_BadFG: BadF/Bad 100.0 1.2E-32 2.6E-37 257.6 24.0 268 25-337 1-271 (271)
7 PRK09557 fructokinase; Reviewe 100.0 3.9E-33 8.4E-38 264.7 19.9 271 23-337 1-299 (301)
8 PRK05082 N-acetylmannosamine k 100.0 1.6E-32 3.4E-37 259.2 21.6 265 23-339 2-288 (291)
9 PRK09698 D-allose kinase; Prov 100.0 2E-32 4.2E-37 259.8 22.2 271 20-343 2-300 (302)
10 PRK00292 glk glucokinase; Prov 100.0 8.9E-29 1.9E-33 236.4 21.4 272 22-338 2-314 (316)
11 PRK12408 glucokinase; Provisio 100.0 1.9E-28 4E-33 236.1 22.1 273 22-341 16-335 (336)
12 PRK13311 N-acetyl-D-glucosamin 100.0 6.8E-29 1.5E-33 230.5 16.8 224 23-279 1-246 (256)
13 PRK14101 bifunctional glucokin 99.9 3.2E-26 6.8E-31 237.9 21.7 277 22-343 18-334 (638)
14 TIGR00749 glk glucokinase, pro 99.9 1.2E-24 2.6E-29 208.0 16.9 274 25-334 1-316 (316)
15 PF00480 ROK: ROK family; Int 99.8 1.9E-21 4.2E-26 170.4 5.5 158 26-217 1-175 (179)
16 PTZ00288 glucokinase 1; Provis 99.8 2.2E-18 4.7E-23 168.8 19.2 300 22-343 26-394 (405)
17 TIGR02707 butyr_kinase butyrat 99.8 1.4E-16 3E-21 153.9 23.9 257 23-326 1-329 (351)
18 PRK03011 butyrate kinase; Prov 99.7 1.2E-15 2.5E-20 147.8 22.1 266 23-336 3-344 (358)
19 PF02685 Glucokinase: Glucokin 99.6 3.7E-14 8E-19 135.3 18.6 277 25-340 1-316 (316)
20 COG0837 Glk Glucokinase [Carbo 99.4 1.2E-10 2.7E-15 107.8 24.6 280 20-339 4-319 (320)
21 PLN02914 hexokinase 99.3 6.6E-09 1.4E-13 104.1 30.1 299 21-339 94-486 (490)
22 PTZ00107 hexokinase; Provision 99.3 8.5E-09 1.8E-13 103.1 29.6 295 21-340 73-460 (464)
23 PLN02405 hexokinase 99.2 4.9E-09 1.1E-13 105.3 26.5 302 21-340 94-489 (497)
24 PRK00976 hypothetical protein; 99.2 4.6E-09 1E-13 99.6 24.7 92 241-345 226-317 (326)
25 PLN02362 hexokinase 99.2 6.5E-09 1.4E-13 104.7 23.1 300 21-340 94-498 (509)
26 smart00732 YqgFc Likely ribonu 99.1 3.7E-10 8E-15 89.2 8.7 93 23-139 2-98 (99)
27 PLN02596 hexokinase-like 99.1 2E-07 4.3E-12 93.6 29.7 297 21-339 95-483 (490)
28 TIGR00241 CoA_E_activ CoA-subs 99.0 4.6E-08 9.9E-13 90.5 20.5 237 23-336 1-248 (248)
29 TIGR03192 benz_CoA_bzdQ benzoy 99.0 2.7E-07 5.8E-12 86.7 23.1 248 23-342 33-291 (293)
30 KOG1369 Hexokinase [Carbohydra 98.8 1.1E-06 2.4E-11 87.3 23.2 303 21-339 85-466 (474)
31 COG1924 Activator of 2-hydroxy 98.7 2.3E-05 4.9E-10 75.3 25.3 247 23-342 136-393 (396)
32 TIGR02261 benz_CoA_red_D benzo 98.6 1.8E-05 4E-10 73.4 23.6 250 23-337 2-262 (262)
33 PRK13318 pantothenate kinase; 98.5 9.3E-07 2E-11 82.3 11.4 126 24-169 2-147 (258)
34 TIGR03286 methan_mark_15 putat 98.5 2.5E-05 5.4E-10 76.4 21.3 244 23-338 145-402 (404)
35 COG5026 Hexokinase [Carbohydra 98.5 6.1E-05 1.3E-09 73.5 22.6 296 21-340 74-459 (466)
36 PRK15080 ethanolamine utilizat 98.5 9.7E-05 2.1E-09 69.2 23.3 135 21-171 23-160 (267)
37 PRK13317 pantothenate kinase; 98.4 5.8E-05 1.3E-09 71.0 19.2 253 22-340 2-275 (277)
38 TIGR01312 XylB D-xylulose kina 98.3 4E-07 8.6E-12 91.9 4.9 101 25-136 1-124 (481)
39 TIGR02529 EutJ ethanolamine ut 98.3 0.00012 2.6E-09 67.5 19.7 129 26-170 1-132 (239)
40 PF00370 FGGY_N: FGGY family o 98.3 3E-06 6.4E-11 78.0 9.0 74 23-105 1-80 (245)
41 PRK13321 pantothenate kinase; 98.3 1.5E-05 3.3E-10 74.1 13.6 125 24-169 2-147 (256)
42 PRK00047 glpK glycerol kinase; 98.2 4.5E-06 9.8E-11 84.8 9.4 77 20-105 3-85 (498)
43 PRK10939 autoinducer-2 (AI-2) 98.2 9.5E-06 2.1E-10 82.9 9.9 75 21-104 2-84 (520)
44 PRK04123 ribulokinase; Provisi 98.1 8.2E-06 1.8E-10 83.9 9.3 76 20-104 1-89 (548)
45 TIGR01311 glycerol_kin glycero 98.1 1.4E-05 3.1E-10 81.1 9.4 74 23-105 2-81 (493)
46 COG1070 XylB Sugar (pentulose 98.0 2E-05 4.4E-10 80.2 9.5 77 20-105 2-85 (502)
47 PTZ00294 glycerol kinase-like 98.0 2.8E-05 6.1E-10 79.2 9.8 74 23-105 3-84 (504)
48 TIGR02259 benz_CoA_red_A benzo 98.0 0.0046 1E-07 60.4 24.2 119 208-337 306-432 (432)
49 PLN02295 glycerol kinase 98.0 2.5E-05 5.3E-10 79.8 9.0 73 23-104 1-83 (512)
50 TIGR01315 5C_CHO_kinase FGGY-f 98.0 2.1E-05 4.6E-10 80.8 8.5 72 23-103 1-78 (541)
51 TIGR01234 L-ribulokinase L-rib 98.0 2.8E-05 6E-10 79.8 9.0 73 23-104 2-92 (536)
52 COG0554 GlpK Glycerol kinase [ 97.9 2.8E-05 6.1E-10 76.8 7.9 73 22-103 5-83 (499)
53 COG3426 Butyrate kinase [Energ 97.9 0.0026 5.7E-08 59.0 19.0 261 20-326 1-332 (358)
54 TIGR01314 gntK_FGGY gluconate 97.9 5.5E-05 1.2E-09 77.0 9.1 73 23-105 1-79 (505)
55 COG1069 AraB Ribulose kinase [ 97.9 3.7E-05 8E-10 76.9 7.3 76 20-103 1-82 (544)
56 PRK10331 L-fuculokinase; Provi 97.8 7.8E-05 1.7E-09 75.3 9.5 72 22-104 2-81 (470)
57 TIGR02628 fuculo_kin_coli L-fu 97.8 8.1E-05 1.8E-09 75.1 9.3 72 22-104 1-80 (465)
58 PRK15027 xylulokinase; Provisi 97.8 9.5E-05 2.1E-09 74.9 9.0 71 23-104 1-77 (484)
59 TIGR00555 panK_eukar pantothen 97.6 0.005 1.1E-07 57.9 17.0 253 24-335 2-278 (279)
60 PF00349 Hexokinase_1: Hexokin 97.5 0.00053 1.1E-08 61.8 9.4 115 21-142 62-203 (206)
61 PF00871 Acetate_kinase: Aceto 97.5 0.018 4E-07 56.7 20.9 76 220-301 257-335 (388)
62 TIGR03722 arch_KAE1 universal 97.3 0.17 3.6E-06 48.7 24.7 100 25-135 1-107 (322)
63 PRK09604 UGMP family protein; 97.3 0.18 3.8E-06 48.8 23.8 102 23-135 2-113 (332)
64 PLN02669 xylulokinase 97.3 0.00099 2.1E-08 68.8 8.6 71 21-101 7-96 (556)
65 PRK09605 bifunctional UGMP fam 97.2 0.29 6.4E-06 50.3 26.4 101 23-135 2-110 (535)
66 TIGR00329 gcp_kae1 metallohydr 97.1 0.19 4.1E-06 48.0 22.4 131 25-166 1-145 (305)
67 PF07318 DUF1464: Protein of u 97.1 0.015 3.2E-07 55.9 14.6 82 243-338 227-314 (343)
68 COG0282 ackA Acetate kinase [E 96.9 0.14 3E-06 49.9 19.1 95 209-314 248-345 (396)
69 PF05378 Hydant_A_N: Hydantoin 96.8 0.0041 8.8E-08 54.6 7.3 65 25-104 2-66 (176)
70 PRK12440 acetate kinase; Revie 96.7 0.025 5.4E-07 55.6 12.6 141 147-314 202-346 (397)
71 PF03727 Hexokinase_2: Hexokin 96.6 0.0065 1.4E-07 56.1 7.4 85 253-339 152-240 (243)
72 PTZ00186 heat shock 70 kDa pre 96.6 1.3 2.8E-05 46.9 25.4 90 69-163 136-229 (657)
73 KOG2517 Ribulose kinase and re 96.6 0.0089 1.9E-07 60.4 8.6 76 21-104 5-87 (516)
74 TIGR00016 ackA acetate kinase. 96.5 0.039 8.6E-07 54.4 12.6 143 147-314 207-353 (404)
75 PRK14878 UGMP family protein; 96.4 0.98 2.1E-05 43.5 25.4 99 25-135 1-106 (323)
76 PRK00180 acetate kinase A/prop 96.4 0.06 1.3E-06 53.2 12.8 143 147-314 203-349 (402)
77 PRK13320 pantothenate kinase; 96.2 0.19 4.1E-06 46.4 14.7 118 23-169 3-137 (244)
78 PRK07157 acetate kinase; Provi 96.1 0.085 1.8E-06 52.0 12.4 87 220-314 257-346 (400)
79 PRK12379 propionate/acetate ki 96.1 0.087 1.9E-06 51.9 12.3 86 220-314 255-343 (396)
80 PRK01433 hscA chaperone protei 96.0 2.1 4.5E-05 44.8 22.8 91 68-162 116-209 (595)
81 PRK12397 propionate kinase; Re 95.9 0.11 2.4E-06 51.2 11.9 86 220-314 259-347 (404)
82 PRK05183 hscA chaperone protei 95.9 0.94 2E-05 47.6 19.6 89 69-162 125-217 (616)
83 PTZ00340 O-sialoglycoprotein e 95.7 2.2 4.8E-05 41.4 26.8 101 23-136 2-112 (345)
84 TIGR00904 mreB cell shape dete 95.6 2.4 5.1E-05 40.7 22.2 69 97-167 100-171 (333)
85 TIGR03723 bact_gcp putative gl 95.5 2.4 5.3E-05 40.6 23.3 101 24-136 1-112 (314)
86 PF14574 DUF4445: Domain of un 95.5 0.046 9.9E-07 54.2 7.5 70 23-100 2-89 (412)
87 PRK07058 acetate kinase; Provi 95.3 0.22 4.7E-06 49.0 11.6 139 147-314 202-344 (396)
88 PRK13324 pantothenate kinase; 95.3 0.98 2.1E-05 42.1 15.5 127 24-169 2-147 (258)
89 PF03652 UPF0081: Uncharacteri 95.0 0.095 2.1E-06 44.0 7.2 91 23-137 2-99 (135)
90 smart00842 FtsA Cell division 94.9 0.15 3.3E-06 44.9 8.6 74 24-105 1-77 (187)
91 TIGR02627 rhamnulo_kin rhamnul 94.9 0.021 4.6E-07 57.4 3.3 71 25-105 1-78 (454)
92 PRK13326 pantothenate kinase; 94.4 1.9 4.2E-05 40.2 14.9 122 22-169 6-149 (262)
93 TIGR00671 baf pantothenate kin 94.2 2 4.3E-05 39.7 14.5 119 25-169 2-139 (243)
94 COG0443 DnaK Molecular chapero 94.2 8.1 0.00018 40.3 24.2 91 68-162 95-188 (579)
95 PF03630 Fumble: Fumble ; Int 94.2 1.9 4.1E-05 41.9 14.9 75 252-336 261-339 (341)
96 TIGR03123 one_C_unchar_1 proba 94.1 0.24 5.2E-06 47.5 8.4 125 25-170 1-152 (318)
97 CHL00094 dnaK heat shock prote 94.0 9.3 0.0002 40.2 23.5 90 69-163 111-204 (621)
98 PRK00109 Holliday junction res 94.0 0.5 1.1E-05 39.7 9.2 92 23-138 5-102 (138)
99 PRK10719 eutA reactivating fac 93.7 1.5 3.3E-05 44.1 13.3 142 23-170 7-170 (475)
100 PLN02920 pantothenate kinase 1 93.3 9 0.0002 37.8 19.4 75 252-336 271-349 (398)
101 TIGR01174 ftsA cell division p 93.3 0.44 9.6E-06 46.5 8.9 72 24-105 2-78 (371)
102 PRK09472 ftsA cell division pr 93.2 0.56 1.2E-05 46.8 9.6 76 22-105 8-86 (420)
103 COG0816 Predicted endonuclease 92.8 0.99 2.2E-05 38.1 9.0 90 23-136 3-99 (141)
104 PRK13928 rod shape-determining 92.6 10 0.00022 36.5 22.4 72 97-170 97-171 (336)
105 COG1548 Predicted transcriptio 92.4 0.52 1.1E-05 43.6 7.3 87 21-131 2-94 (330)
106 PRK10854 exopolyphosphatase; P 92.2 2.7 5.8E-05 43.2 13.3 143 16-168 5-159 (513)
107 PRK13322 pantothenate kinase; 92.2 3.3 7.1E-05 38.3 12.6 118 24-169 2-139 (246)
108 PTZ00009 heat shock 70 kDa pro 92.1 18 0.0004 38.2 25.4 91 68-162 115-210 (653)
109 smart00268 ACTIN Actin. ACTIN 92.0 3.6 7.7E-05 40.0 13.4 93 74-170 74-167 (373)
110 COG0533 QRI7 Metal-dependent p 92.0 12 0.00027 36.1 24.4 270 23-334 2-310 (342)
111 PLN02666 5-oxoprolinase 91.9 0.63 1.4E-05 52.5 8.8 55 21-85 8-62 (1275)
112 PRK13411 molecular chaperone D 91.9 19 0.00042 38.1 22.6 89 69-162 109-202 (653)
113 TIGR00250 RNAse_H_YqgF RNAse H 91.5 1.2 2.5E-05 37.1 8.0 89 25-137 1-95 (130)
114 cd00012 ACTIN Actin; An ubiqui 90.3 5.2 0.00011 38.9 12.7 93 74-170 74-167 (371)
115 PRK11031 guanosine pentaphosph 90.0 6.3 0.00014 40.3 13.4 138 22-169 6-155 (496)
116 PRK13331 pantothenate kinase; 89.4 16 0.00035 33.9 14.4 116 23-169 8-136 (251)
117 COG1521 Pantothenate kinase ty 89.1 9.3 0.0002 35.5 12.4 122 24-168 2-144 (251)
118 PF14639 YqgF: Holliday-juncti 88.7 5.1 0.00011 34.2 9.8 99 23-140 6-113 (150)
119 TIGR03706 exo_poly_only exopol 88.6 9.7 0.00021 36.1 12.8 136 24-169 2-148 (300)
120 TIGR03281 methan_mark_12 putat 88.0 3.2 6.9E-05 39.5 8.7 92 242-345 226-317 (326)
121 COG0145 HyuA N-methylhydantoin 87.9 1.7 3.7E-05 46.0 7.6 50 22-83 2-51 (674)
122 PLN02902 pantothenate kinase 87.8 46 0.00099 36.3 22.6 75 252-336 320-398 (876)
123 TIGR03725 bact_YeaZ universal 87.5 16 0.00034 32.5 12.7 96 24-139 1-99 (202)
124 COG0849 ftsA Cell division ATP 87.4 3.1 6.7E-05 41.5 8.7 73 23-105 7-84 (418)
125 PF06723 MreB_Mbl: MreB/Mbl pr 87.1 16 0.00034 35.3 13.2 93 75-169 72-168 (326)
126 PF13941 MutL: MutL protein 86.9 2.4 5.3E-05 42.7 7.8 57 24-90 2-58 (457)
127 COG4020 Uncharacterized protei 86.9 2.3 4.9E-05 39.4 6.8 92 242-345 232-323 (332)
128 PF02782 FGGY_C: FGGY family o 84.9 4.5 9.7E-05 35.3 7.7 75 253-339 122-196 (198)
129 PF14450 FtsA: Cell division p 84.1 0.91 2E-05 37.0 2.7 93 24-132 1-98 (120)
130 PRK13929 rod-share determining 84.0 41 0.0009 32.3 14.7 72 97-170 100-174 (335)
131 COG4820 EutJ Ethanolamine util 83.6 4.7 0.0001 36.2 7.0 132 22-170 29-164 (277)
132 PF00022 Actin: Actin; InterP 82.1 31 0.00068 33.5 13.2 93 74-170 73-166 (393)
133 PRK13927 rod shape-determining 81.8 49 0.0011 31.5 25.9 65 97-163 98-165 (334)
134 PF03309 Pan_kinase: Type III 80.8 30 0.00066 30.7 11.6 120 24-169 1-143 (206)
135 COG1214 Inactive homolog of me 80.1 30 0.00065 31.4 11.3 100 23-140 2-104 (220)
136 PRK13930 rod shape-determining 79.3 59 0.0013 30.9 21.0 74 95-170 100-176 (335)
137 COG0248 GppA Exopolyphosphatas 77.7 26 0.00057 35.8 11.2 136 22-168 3-151 (492)
138 PTZ00452 actin; Provisional 77.3 51 0.0011 32.3 12.9 92 74-170 79-172 (375)
139 TIGR01175 pilM type IV pilus a 76.4 9.9 0.00021 36.5 7.5 75 22-105 3-78 (348)
140 PTZ00466 actin-like protein; P 74.0 64 0.0014 31.7 12.6 93 74-170 86-178 (380)
141 KOG2707 Predicted metalloprote 73.9 93 0.002 30.4 21.0 90 24-123 34-134 (405)
142 COG4972 PilM Tfp pilus assembl 73.5 7.1 0.00015 37.6 5.4 71 23-105 11-85 (354)
143 COG5146 PanK Pantothenate kina 72.6 82 0.0018 29.2 18.9 49 23-85 19-67 (342)
144 PTZ00004 actin-2; Provisional 70.5 88 0.0019 30.6 12.7 93 74-170 80-173 (378)
145 PF04312 DUF460: Protein of un 67.9 24 0.00052 29.6 6.8 54 11-79 21-74 (138)
146 PRK05082 N-acetylmannosamine k 67.6 2.9 6.3E-05 39.2 1.5 41 154-194 134-175 (291)
147 TIGR00143 hypF [NiFe] hydrogen 65.9 17 0.00038 38.9 7.0 81 244-337 621-710 (711)
148 PLN03184 chloroplast Hsp70; Pr 62.7 2.2E+02 0.0047 30.4 19.4 89 69-162 148-240 (673)
149 PRK13410 molecular chaperone D 62.5 2.2E+02 0.0047 30.4 21.5 91 68-162 110-203 (668)
150 PF06277 EutA: Ethanolamine ut 62.2 1.7E+02 0.0037 29.8 12.7 97 23-123 4-112 (473)
151 PF11104 PilM_2: Type IV pilus 61.3 17 0.00038 34.9 5.6 71 26-105 1-72 (340)
152 PF00012 HSP70: Hsp70 protein; 60.9 2.1E+02 0.0045 29.6 19.4 90 68-162 110-204 (602)
153 PRK11678 putative chaperone; P 59.6 59 0.0013 32.8 9.3 48 287-341 400-449 (450)
154 TIGR01314 gntK_FGGY gluconate 59.1 40 0.00087 34.3 8.1 77 253-341 374-450 (505)
155 COG1069 AraB Ribulose kinase [ 58.5 2.3E+02 0.005 29.3 13.0 74 256-338 404-477 (544)
156 PRK04123 ribulokinase; Provisi 58.3 35 0.00076 35.1 7.6 74 254-339 413-486 (548)
157 PTZ00281 actin; Provisional 57.9 1.9E+02 0.0041 28.2 13.8 93 74-170 80-173 (376)
158 PHA03033 hypothetical protein; 57.9 3.8 8.2E-05 33.6 0.3 28 3-30 4-31 (142)
159 PLN02669 xylulokinase 57.5 33 0.00071 35.6 7.2 75 254-342 421-495 (556)
160 PRK09585 anmK anhydro-N-acetyl 57.2 2E+02 0.0043 28.3 18.9 57 74-134 70-133 (365)
161 KOG1385 Nucleoside phosphatase 56.7 63 0.0014 32.2 8.4 85 21-105 66-152 (453)
162 TIGR01319 glmL_fam conserved h 54.4 25 0.00053 35.6 5.4 51 27-89 1-52 (463)
163 COG1940 NagC Transcriptional r 54.4 2.1 4.6E-05 40.6 -2.0 42 153-194 144-185 (314)
164 PRK15027 xylulokinase; Provisi 54.2 47 0.001 33.6 7.6 75 253-340 360-435 (484)
165 PRK00039 ruvC Holliday junctio 53.8 64 0.0014 27.8 7.3 57 23-90 3-62 (164)
166 TIGR01312 XylB D-xylulose kina 53.4 60 0.0013 32.6 8.2 77 253-341 363-439 (481)
167 PF01548 DEDD_Tnp_IS110: Trans 53.3 28 0.00062 28.6 5.0 29 24-61 1-29 (144)
168 PF02075 RuvC: Crossover junct 53.1 33 0.00071 29.0 5.3 60 24-91 1-60 (149)
169 TIGR01234 L-ribulokinase L-rib 52.7 51 0.0011 33.9 7.7 75 254-340 410-484 (536)
170 PTZ00294 glycerol kinase-like 52.6 58 0.0012 33.2 8.0 75 254-340 380-454 (504)
171 COG3894 Uncharacterized metal- 52.3 33 0.00072 35.0 5.8 31 22-60 164-194 (614)
172 cd00529 RuvC_resolvase Hollida 51.3 68 0.0015 27.2 7.0 59 24-90 2-60 (154)
173 PRK10331 L-fuculokinase; Provi 51.2 57 0.0012 32.9 7.6 75 253-339 362-436 (470)
174 PRK00047 glpK glycerol kinase; 50.6 66 0.0014 32.7 8.1 75 254-340 377-451 (498)
175 PTZ00280 Actin-related protein 50.6 1.4E+02 0.0031 29.4 10.3 95 74-170 81-184 (414)
176 PF07736 CM_1: Chorismate muta 49.2 36 0.00079 27.8 4.7 39 68-106 13-51 (118)
177 COG2441 Predicted butyrate kin 48.6 49 0.0011 31.3 6.0 52 25-89 1-52 (374)
178 TIGR02628 fuculo_kin_coli L-fu 48.5 66 0.0014 32.4 7.6 75 254-340 367-441 (465)
179 PF00814 Peptidase_M22: Glycop 48.2 2.3E+02 0.005 26.3 16.2 209 73-315 29-247 (268)
180 PRK10939 autoinducer-2 (AI-2) 47.9 78 0.0017 32.4 8.1 75 254-340 383-457 (520)
181 PRK13310 N-acetyl-D-glucosamin 47.9 3.7 8.1E-05 38.7 -1.5 41 154-194 135-186 (303)
182 PTZ00400 DnaK-type molecular c 47.4 3.8E+02 0.0081 28.5 21.9 91 68-162 149-242 (663)
183 TIGR01311 glycerol_kin glycero 46.2 80 0.0017 32.0 7.9 76 253-340 372-447 (493)
184 COG2183 Tex Transcriptional ac 46.0 57 0.0012 35.1 6.7 99 22-140 330-429 (780)
185 PRK09698 D-allose kinase; Prov 45.2 6.3 0.00014 37.1 -0.4 38 156-193 144-182 (302)
186 COG3734 DgoK 2-keto-3-deoxy-ga 44.7 35 0.00076 32.3 4.4 31 22-61 5-35 (306)
187 TIGR01796 CM_mono_aroH monofun 44.6 46 0.001 27.1 4.6 38 68-105 13-50 (117)
188 COG2192 Predicted carbamoyl tr 44.5 39 0.00085 34.8 5.1 75 254-344 264-340 (555)
189 cd02185 AroH Chorismate mutase 44.2 47 0.001 27.1 4.6 37 68-104 13-49 (117)
190 PRK09557 fructokinase; Reviewe 42.5 3.2 6.9E-05 39.1 -2.8 39 154-192 135-183 (301)
191 PF03702 UPF0075: Uncharacteri 42.1 1.5E+02 0.0033 29.1 8.7 236 74-343 67-341 (364)
192 PF02543 CmcH_NodU: Carbamoylt 41.6 94 0.002 30.4 7.2 71 255-343 142-217 (360)
193 PRK13328 pantothenate kinase; 39.4 3.1E+02 0.0068 25.3 14.0 118 23-169 2-141 (255)
194 TIGR02350 prok_dnaK chaperone 39.3 4.6E+02 0.01 27.2 21.0 90 69-162 106-199 (595)
195 COG1070 XylB Sugar (pentulose 37.0 1.3E+02 0.0029 30.6 7.8 74 253-338 374-447 (502)
196 TIGR00228 ruvC crossover junct 36.9 1.2E+02 0.0026 26.0 6.3 58 24-90 1-58 (156)
197 TIGR01175 pilM type IV pilus a 35.3 3E+02 0.0065 26.1 9.6 28 24-61 190-217 (348)
198 PF05035 DGOK: 2-keto-3-deoxy- 34.4 22 0.00047 33.7 1.5 127 28-170 1-152 (287)
199 PRK00290 dnaK molecular chaper 34.3 5.7E+02 0.012 26.8 21.3 91 68-162 108-201 (627)
200 TIGR01315 5C_CHO_kinase FGGY-f 33.9 1.2E+02 0.0025 31.3 6.9 47 287-339 444-490 (541)
201 TIGR01865 cas_Csn1 CRISPR-asso 33.8 31 0.00067 37.5 2.7 20 22-41 1-20 (805)
202 PRK10640 rhaB rhamnulokinase; 33.3 1.6E+02 0.0034 29.8 7.6 74 253-340 348-422 (471)
203 TIGR00744 ROK_glcA_fam ROK fam 33.2 10 0.00022 35.9 -1.0 34 161-194 143-178 (318)
204 TIGR01129 secD protein-export 31.2 1.6E+02 0.0034 29.3 7.0 73 25-110 1-79 (397)
205 TIGR02627 rhamnulo_kin rhamnul 30.7 1.8E+02 0.004 29.0 7.5 75 253-340 360-434 (454)
206 PRK13410 molecular chaperone D 30.2 40 0.00087 35.9 2.8 47 286-339 328-376 (668)
207 PLN02295 glycerol kinase 29.8 1.5E+02 0.0032 30.3 6.7 31 126-157 241-272 (512)
208 PRK00290 dnaK molecular chaper 29.5 41 0.00089 35.4 2.7 20 22-41 2-21 (627)
209 KOG0104 Molecular chaperones G 28.4 8.1E+02 0.017 26.7 19.6 92 68-163 133-232 (902)
210 PF00480 ROK: ROK family; Int 28.1 5.4 0.00012 34.2 -3.5 40 154-193 130-170 (179)
211 COG4972 PilM Tfp pilus assembl 27.5 4.4E+02 0.0096 25.7 8.9 96 24-137 195-324 (354)
212 COG1077 MreB Actin-like ATPase 26.8 6E+02 0.013 24.7 11.0 90 75-166 79-173 (342)
213 COG4401 AroH Chorismate mutase 25.5 1.8E+02 0.004 23.5 5.0 36 68-103 15-50 (125)
214 COG4020 Uncharacterized protei 25.2 2.7E+02 0.0059 26.1 6.7 22 20-41 1-22 (332)
215 PRK11678 putative chaperone; P 25.2 46 0.001 33.6 2.1 67 94-162 148-225 (450)
216 PHA02533 17 large terminase pr 23.9 6E+02 0.013 26.3 9.9 75 21-123 314-395 (534)
217 COG4126 Hydantoin racemase [Am 23.2 1.6E+02 0.0034 27.0 4.7 48 69-129 154-201 (230)
218 TIGR02350 prok_dnaK chaperone 23.1 57 0.0012 34.0 2.3 47 286-339 324-372 (595)
219 COG0068 HypF Hydrogenase matur 22.6 3.7E+02 0.0081 28.9 8.0 71 258-337 669-745 (750)
220 COG2428 Uncharacterized conser 22.2 1.2E+02 0.0025 26.6 3.6 49 287-338 84-134 (196)
221 PRK13311 N-acetyl-D-glucosamin 21.3 14 0.00029 34.0 -2.4 33 161-193 142-185 (256)
222 PF00022 Actin: Actin; InterP 20.6 2.3E+02 0.005 27.4 6.0 48 288-338 312-366 (393)
223 PF08735 DUF1786: Putative pyr 20.4 3.1E+02 0.0068 25.5 6.3 46 22-80 167-212 (254)
224 PTZ00452 actin; Provisional 20.1 1.1E+02 0.0023 30.0 3.4 46 289-337 296-347 (375)
No 1
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.4e-40 Score=300.18 Aligned_cols=308 Identities=30% Similarity=0.444 Sum_probs=278.8
Q ss_pred ccEEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccc-cceeE
Q 019144 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSA-VRAVC 99 (345)
Q Consensus 21 ~~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~-i~~Ig 99 (345)
..++.|||.|.|+++++++|. +++++.+....++|++..+.+++.+.|.+.|.++..+++.+... +.++|
T Consensus 2 ~~~y~GvEGgaT~s~~Vivd~---------~~~~~~~a~~~~Tnh~~ig~~~~~~rie~~i~~A~~k~g~d~~~~lr~lg 72 (336)
T KOG1794|consen 2 KDFYGGVEGGATCSRLVIVDE---------DGTILGRAVGGGTNHWLIGSTTCASRIEDMIREAKEKAGWDKKGPLRSLG 72 (336)
T ss_pred CceeEeecCCcceeEEEEECC---------CCCEeeEeeccccccccCCchHHHHHHHHHHHHHHhhcCCCccCccceee
Confidence 469999999999999999999 89999999999999988899999999999999999999988877 89999
Q ss_pred EeecCCCChhHHHHHHHHHHhhCCCC-ceEEEeCcHHHHHhcccCCCCCeEEEEeCccceeeeecCCCCeEEeccCCCCc
Q 019144 100 LAVSGVNHPTDQQRILNWLRDIFPGN-VRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPIL 178 (345)
Q Consensus 100 ig~pG~~~~~~~~~l~~~L~~~~~~~-~pV~v~NDa~~a~~~~~~g~~~~v~v~~GTG~~g~gi~~dG~~~~~Gg~G~~~ 178 (345)
++++|.++++....|.+++++.||.. ..++|.||+..++++...+...++++++|||+.+.+++.||+..++||||||+
T Consensus 73 L~lSg~d~e~~~~~lv~~~R~~fps~ae~~~v~sDa~~sl~a~t~g~~~GiVLiaGTgs~crl~~~DGs~~~~ggwg~~i 152 (336)
T KOG1794|consen 73 LGLSGTDQEDKNRKLVTEFRDKFPSVAENFYVTSDADGSLAAATPGGEGGIVLIAGTGSNCRLVNPDGSEKGAGGWGHMI 152 (336)
T ss_pred eecccCCchhHHHHHHHHHHHhccchhheeeeehhHHHHHhhcCCCCCCcEEEEecCCceeEEECCCCCccCCCCCCCcc
Confidence 99999999999999999999999842 24999999999988877777899999999999999999999999999999999
Q ss_pred CCcCcHHHHHHHHHHHHHHHhcCCCCC----ChhHHHHHHHcCCCChhhHHHHhhcCCChHHHhcchHHHHHHHHcCCHH
Q 019144 179 GDWGSGYGIAAQALTAVIRAYDGRGPD----TMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEV 254 (345)
Q Consensus 179 gd~G~a~~iG~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~a~~gD~~ 254 (345)
||+||++||+|++++-++...||..+. .-+++.+.+++++.++-+++++.|++.++..++.+++.+.+.++.|||+
T Consensus 153 Gd~GSaywia~~Avq~vfda~dg~e~~~~~i~~v~~tif~~~~l~d~l~ml~~~Ys~f~k~riA~f~~kla~~ae~Gd~~ 232 (336)
T KOG1794|consen 153 GDGGSAYWIARQAVQMVFDAEDGFENMMDKIKDVKQTIFKHFNLRDRLQMLEHLYSDFDKHRIALFTEKLAEHAEIGDPL 232 (336)
T ss_pred CCCcchhhhhhhhhhheeehhcCcccccchHHHHHHHHHHHcCCCCHHHHHHHHHhcchHHHHHHHHHHHHhhhhccCHH
Confidence 999999999999999988888888665 5678889999999899999999999888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhh--CCCceeeCCCCChHHH
Q 019144 255 ANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRD--YPGAVPIRPKVEPAVG 332 (345)
Q Consensus 255 a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~--~~~~~i~~~~~a~~~G 332 (345)
..+||++++..||+.+.+++..+.|+.-++ ....||+.|+++..++.| .+-+...+... ++.+++..+...+++|
T Consensus 233 ~~~ifr~Ag~~Lg~~V~aVl~~l~~~~k~g-~~l~Iv~vG~V~~Sw~~l--~~Gfl~sls~~~~f~~~~l~~~k~ssAvg 309 (336)
T KOG1794|consen 233 SAEIFRNAGETLGRHVVAVLPQLPPTLKKG-KTLPIVCVGGVFDSWDLL--QEGFLDSLSDTRGFERVELYRPKESSAVG 309 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCchhccc-CcceEEEEcchhhHHHHH--HHHHHHHhhcccCccceEEEeecccchHH
Confidence 999999999999999999999999853333 346899999999887764 66677777765 5778999999999999
Q ss_pred HHHHHHHh
Q 019144 333 AALLAWNS 340 (345)
Q Consensus 333 Aa~la~~~ 340 (345)
||++|.+.
T Consensus 310 AA~laa~~ 317 (336)
T KOG1794|consen 310 AAILAASL 317 (336)
T ss_pred HHHHhhhh
Confidence 99999864
No 2
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.4e-36 Score=278.82 Aligned_cols=292 Identities=31% Similarity=0.448 Sum_probs=247.3
Q ss_pred CccEEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeE
Q 019144 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC 99 (345)
Q Consensus 20 ~~~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Ig 99 (345)
|+.|+||||.|||+|++.+.|. +++++.+...++.|....+.++.+..+.+.|.+++.+++.++++|..+.
T Consensus 3 ~~~~~lGVDGGGTkt~a~l~~~---------~g~vlg~g~sGpAN~~~~~~e~A~~ni~~ai~~A~~~aG~~~~~i~~~~ 73 (301)
T COG2971 3 PMPYFLGVDGGGTKTRAVLADE---------DGNVLGRGKSGPANIQLVGKEEAVRNIKDAIREALDEAGLKPDEIAAIV 73 (301)
T ss_pred CccEEEEEccCCcceEEEEEcC---------CCcEEEEeccCCceecccchHHHHHHHHHHHHHHHHhcCCCHHHhCcee
Confidence 3469999999999999999998 8999999999999987555699999999999999999999999887766
Q ss_pred EeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhcccCCCCCeEEEEeCccceeeeecCCCCeEEeccCCCCcC
Q 019144 100 LAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILG 179 (345)
Q Consensus 100 ig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~~~g~~~~v~v~~GTG~~g~gi~~dG~~~~~Gg~G~~~g 179 (345)
.|+.+...+.+. -...++..+++.-.+.|+||+..|+.++. +.++++++++|||+++.+. .+|+..|.|||||++|
T Consensus 74 agla~ag~~~~~--~~~~~~~~l~~a~~v~v~~Dg~iAl~ga~-~~~~Gii~i~GTGSi~~~~-~gg~~~r~GG~Gf~Ig 149 (301)
T COG2971 74 AGLALAGANVEE--AREELERLLPFAGKVDVENDGLIALRGAL-GDDDGIIVIAGTGSIGYGR-KGGRRERVGGWGFPIG 149 (301)
T ss_pred eeeeccCcchhH--HHHHHHHhcCccceEEEecChHHHHhhcc-CCCCCEEEEecCCeEEEEE-eCCeeEEecCcCcccc
Confidence 666666433221 22333455664237999999999999754 5568999999999999988 7899999999999999
Q ss_pred CcCcHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCCCChhhHHHHhhcCC-ChHHHhcchHHHHHHHHcCCHHHHHH
Q 019144 180 DWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDP-SWARIAALVPVVVSCAEAGDEVANKI 258 (345)
Q Consensus 180 d~G~a~~iG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~v~~~a~~gD~~a~~i 258 (345)
|+||++|+|+..+++.++.+||+.+.+++...++++|+. +.++|+.+.|+.. ....++++++.|+++|.+|||.|++|
T Consensus 150 DegSga~ig~~~L~~~lra~DG~~~~t~L~d~v~~~f~~-d~edlv~~~y~a~~~~~~ia~lap~V~~~A~~GD~~A~~I 228 (301)
T COG2971 150 DEGSGAWIGREALQEALRAFDGRREATPLTDAVMAEFNL-DPEDLVAFIYKAGPGDKKIAALAPAVFEAARKGDPVAIRI 228 (301)
T ss_pred ccchHHHHHHHHHHHHHHHhcCCccCChHHHHHHHHhCC-CHHHHHHHHHhcCCchHHHHHhhHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999999999999999999996 8999999999753 34458899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCChHHHHHHHHH
Q 019144 259 LQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGAALLAW 338 (345)
Q Consensus 259 l~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~i~~~~~a~~~GAa~la~ 338 (345)
|++++.++...+..+. .++. +.++.+.||++...+.| ...+++.+... ....++.||..+|+
T Consensus 229 l~~aa~~i~~~~~~l~-~~~g-------~~~l~l~GG~~~~~~~~--~~~~~~~l~~~--------~~~D~~~GA~~~A~ 290 (301)
T COG2971 229 LKEAAAYIATLLEALS-IFNG-------SEKLSLLGGLAPSYPYY--LSLFRRALLVP--------PIGDALSGAVLLAL 290 (301)
T ss_pred HHHHHHHHHHHHHHHh-cccC-------CceEEEeccccccchhh--HHHHHHHhcCC--------ccccHHHHHHHHHH
Confidence 9999999998887764 4443 68999999999998876 77776666542 25778899999998
Q ss_pred Hhhhc
Q 019144 339 NSFMN 343 (345)
Q Consensus 339 ~~~~~ 343 (345)
..+..
T Consensus 291 ~~~~~ 295 (301)
T COG2971 291 GRFGE 295 (301)
T ss_pred Hhhhh
Confidence 87743
No 3
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=100.00 E-value=2.5e-35 Score=281.43 Aligned_cols=277 Identities=18% Similarity=0.140 Sum_probs=218.8
Q ss_pred EEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEeecC
Q 019144 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (345)
Q Consensus 25 lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~pG 104 (345)
||+|+|+|+++++++|+ +|+++.+.+.+.. .+++++++.+.+.+++++++.+....++.+|||++||
T Consensus 1 lgidig~t~~~~~l~d~---------~g~i~~~~~~~~~----~~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG 67 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDE---------EGNILSKWKVPTD----TTPETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPG 67 (318)
T ss_pred CEEEeCCCEEEEEEECC---------CCCEEEEEEeCCC----CCHHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccc
Confidence 68999999999999999 8999988776543 3678899999999999999988777789999999999
Q ss_pred CCChhH----------H--HHHHHHHHhhCCCCceEEEeCcHHHHHhccc-----CCCCCeEEEEeCccceeeeecCCCC
Q 019144 105 VNHPTD----------Q--QRILNWLRDIFPGNVRLYVHNDALAALASGT-----MGKLHGCVLIAGTGTIAYGFTEDGR 167 (345)
Q Consensus 105 ~~~~~~----------~--~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~~-----~g~~~~v~v~~GTG~~g~gi~~dG~ 167 (345)
+++++. | .+|++.|+++|+ .||+++||+|+++++++ .+.++++++.+|||+ |+|++.||+
T Consensus 68 ~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~--~pv~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv~~G~ 144 (318)
T TIGR00744 68 PVNRQRGTVYFAVNLDWKQEPLKEKVEARVG--LPVVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGIIINGE 144 (318)
T ss_pred cccCCCCEEEecCCCCCCCCCHHHHHHHHHC--CCEEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEEECCE
Confidence 976532 2 378999999998 89999999999988764 245789999999998 778999999
Q ss_pred eEEeccCCCCcCCcCcHHHHHHHHHHHHHHHhcC-CCCCChhHHHHHHHcCCCChhhHHHHhh---cCCCh-HH------
Q 019144 168 DARAAGAGPILGDWGSGYGIAAQALTAVIRAYDG-RGPDTMLTSNILSTLELSSPDELIGWTY---VDPSW-AR------ 236 (345)
Q Consensus 168 ~~~~Gg~G~~~gd~G~a~~iG~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~-~~------ 236 (345)
+++ |++|.++|+||..+. .++ ..|.|+.++|++.+.+ ...|.+... ..... ..
T Consensus 145 ~~~--------G~~g~agEiGh~~v~-----~~g~~~C~cG~~gclE~~~s---~~al~~~~~~~~~~~~~~~~~~~~~~ 208 (318)
T TIGR00744 145 IRH--------GHNGVGAEIGHIRMV-----PDGRLLCNCGKQGCIETYAS---ATGLVRYAKRANAKPERAEVLLALGD 208 (318)
T ss_pred Eee--------cCCCCCcccCceEeC-----CCCCcccCCCCcchHHHHhC---HHHHHHHHHHHhccccccchhhcccc
Confidence 997 677777777776542 344 5577777777777754 455554322 11000 00
Q ss_pred -HhcchHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHh
Q 019144 237 -IAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILR 315 (345)
Q Consensus 237 -~~~~~~~v~~~a~~gD~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~ 315 (345)
.....+.+++++++||+.|++++++++++|+.+++|++++|| |+.|||+|++....+.| .+.+++.+++
T Consensus 209 ~~~~~~~~i~~~~~~gD~~a~~i~~~~~~~L~~~i~~~~~~~d--------P~~IvlgG~~~~~~~~~--~~~i~~~~~~ 278 (318)
T TIGR00744 209 GDGISAKHVFVAARQGDPVAVDSYREVARWAGAGLADLASLFN--------PSAIVLGGGLSDAGDLL--LDPIRKSYKR 278 (318)
T ss_pred cCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCEEEECChhhhCcHHH--HHHHHHHHHH
Confidence 012457899999999999999999999999999999999999 59999999998775554 8888888887
Q ss_pred h-CC----CceeeC---CCCChHHHHHHHHHHhhhc
Q 019144 316 D-YP----GAVPIR---PKVEPAVGAALLAWNSFMN 343 (345)
Q Consensus 316 ~-~~----~~~i~~---~~~a~~~GAa~la~~~~~~ 343 (345)
+ .+ .++|+. .++++++||+.++++.+.+
T Consensus 279 ~~~~~~~~~~~i~~s~~~~~~~~~Gaa~~~~~~~~~ 314 (318)
T TIGR00744 279 WLFGGARQVADIIAAQLGNDAGLVGAADLARTYIIE 314 (318)
T ss_pred HhhhcccCCcEEEEcccCCchhhHHHHHHHHHhccC
Confidence 5 22 244543 3577899999999988764
No 4
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=100.00 E-value=2.7e-34 Score=272.79 Aligned_cols=273 Identities=18% Similarity=0.110 Sum_probs=205.6
Q ss_pred EEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEee
Q 019144 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~ 102 (345)
+++|+|+|+|+++++++|+ +++++.+.+.+.+ . .+++++++.+.+.++++..+.+ .+.+|||++
T Consensus 1 ~~lgidig~t~i~~~l~d~---------~g~i~~~~~~~~~-~--~~~~~~~~~i~~~i~~~~~~~~----~~~~igia~ 64 (303)
T PRK13310 1 MYYGFDIGGTKIELGVFNE---------KLELQWEERVPTP-R--DSYDAFLDAVCELVAEADQRFG----CKGSVGIGI 64 (303)
T ss_pred CeEEEEeCCCcEEEEEECC---------CCcEEEEEEecCC-C--cCHHHHHHHHHHHHHHHHhhcC----CcceEEEeC
Confidence 3699999999999999999 8999988876543 2 4688899999998888765432 245899999
Q ss_pred cCCCChhH----------H--HHHHHHHHhhCCCCceEEEeCcHHHHHhcccC-----CCCCeEEEEeCccceeeeecCC
Q 019144 103 SGVNHPTD----------Q--QRILNWLRDIFPGNVRLYVHNDALAALASGTM-----GKLHGCVLIAGTGTIAYGFTED 165 (345)
Q Consensus 103 pG~~~~~~----------~--~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~~~-----g~~~~v~v~~GTG~~g~gi~~d 165 (345)
||+++++. | .+|+++|+++|+ .||+++||+|++++++++ +.++++++.+|||+ |+|++.|
T Consensus 65 pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~--~pV~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtGi-G~giv~~ 141 (303)
T PRK13310 65 PGMPETEDGTLYAANVPAASGKPLRADLSARLG--RDVRLDNDANCFALSEAWDDEFTQYPLVMGLILGTGV-GGGLVFN 141 (303)
T ss_pred CCcccCCCCEEeccCcccccCCcHHHHHHHHHC--CCeEEeccHhHHHHHHhhhccccCCCcEEEEEecCce-EEEEEEC
Confidence 99986432 2 379999999998 899999999999888742 35789999999997 7789999
Q ss_pred CCeEEeccCCCCcCCcCcHHHHHHHHHHHHHHHhcC-----CCCCChhHHHHHHHcCCCChhhHHHHhhcCCChHHHhcc
Q 019144 166 GRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDG-----RGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAAL 240 (345)
Q Consensus 166 G~~~~~Gg~G~~~gd~G~a~~iG~~~~~~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (345)
|++++ |.+|.++|+||..+...-....+ ..|.|+..+|++.+.+ ...|.+.+..... .. ..
T Consensus 142 G~l~~--------G~~g~aGEiGH~~v~~~~~~~~g~~~~~~~C~CG~~gclE~~~S---~~al~~~~~~~~~-~~--~~ 207 (303)
T PRK13310 142 GKPIS--------GRSYITGEFGHMRLPVDALTLLGWDAPLRRCGCGQKGCIENYLS---GRGFEWLYQHYYG-EP--LQ 207 (303)
T ss_pred CEEee--------CCCCccccccceeecccccccccccCCCccCCCCCcchHHHhhc---HHHHHHHHHHhcc-CC--CC
Confidence 99997 55566666666654210000001 3466777778887764 4555544321100 01 13
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhh-CC-
Q 019144 241 VPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRD-YP- 318 (345)
Q Consensus 241 ~~~v~~~a~~gD~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~-~~- 318 (345)
.+.+++++++||+.|.+++++++++||.+|+|++++|| |+.|||+|++.. .+.+ .+.+++.+.++ .|
T Consensus 208 ~~~l~~~~~~gd~~a~~~~~~~~~~la~~l~n~~~~ld--------P~~IvlgG~~~~-~~~~--~~~l~~~~~~~~~~~ 276 (303)
T PRK13310 208 APEIIALYYQGDEQAVAHVERYLDLLAICLGNILTIVD--------PHLVVLGGGLSN-FDAI--YEQLPKRLPRHLLPV 276 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHcC--------CCEEEECCcccC-hHHH--HHHHHHHHHHHhccc
Confidence 46889999999999999999999999999999999999 599999999886 4544 78889888876 22
Q ss_pred --CceeeC---CCCChHHHHHHHHHH
Q 019144 319 --GAVPIR---PKVEPAVGAALLAWN 339 (345)
Q Consensus 319 --~~~i~~---~~~a~~~GAa~la~~ 339 (345)
.++|.. .++++++||+.+++.
T Consensus 277 ~~~~~i~~s~~~~~a~~~GAa~~~l~ 302 (303)
T PRK13310 277 ARVPRIEKARHGDAGGVRGAAFLHLT 302 (303)
T ss_pred ccCceEEEcccCchHHHHhHHHHhhc
Confidence 344544 357789999998864
No 5
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-33 Score=269.68 Aligned_cols=282 Identities=19% Similarity=0.187 Sum_probs=211.9
Q ss_pred cCCccEEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccce
Q 019144 18 SGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRA 97 (345)
Q Consensus 18 ~~~~~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~ 97 (345)
++++.+++|||+|+|+++++++|+ +|+++.+.+.+++.. ...+++.+.+.+.+++++.+.. ...++.+
T Consensus 2 ~~~~~~~lgidIggt~i~~~l~d~---------~g~~l~~~~~~~~~~--~~~~~~~~~i~~~i~~~~~~~~-~~~~~iG 69 (314)
T COG1940 2 NPEAMTVLGIDIGGTKIKVALVDL---------DGEILLRERIPTPTP--DPEEAILEAILALVAELLKQAQ-GRVAIIG 69 (314)
T ss_pred CccCcEEEEEEecCCEEEEEEECC---------CCcEEEEEEEecCCC--CchhHHHHHHHHHHHHHHHhcC-CcCceEE
Confidence 345569999999999999999999 899988888766544 2346899999999999999876 4445667
Q ss_pred eEEeecCCCChhH------------HHHHHHHHHhhCCCCceEEEeCcHHHHHhccc-----CCCCCeEEEEeCccceee
Q 019144 98 VCLAVSGVNHPTD------------QQRILNWLRDIFPGNVRLYVHNDALAALASGT-----MGKLHGCVLIAGTGTIAY 160 (345)
Q Consensus 98 Igig~pG~~~~~~------------~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~~-----~g~~~~v~v~~GTG~~g~ 160 (345)
|+++.||.+++.. ..+|++.|+++|+ .||+|+||+|+++++|. .+.++++++++|||+ |+
T Consensus 70 Igi~~pg~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~Pv~veNDan~aalaE~~~g~~~~~~~~~~i~~gtGI-G~ 146 (314)
T COG1940 70 IGIPGPGDVDNGTVIVPAPNLGWWNGVDLAEELEARLG--LPVFVENDANAAALAEAWFGAGRGIDDVVYITLGTGI-GG 146 (314)
T ss_pred EEeccceeccCCcEEeecCCCCccccccHHHHHHHHHC--CCEEEecHHHHHHHHHHHhCCCCCCCCEEEEEEccce-eE
Confidence 7777777655432 1469999999998 89999999999999874 235689999999997 77
Q ss_pred eecCCCCeEEeccCCCCcCCcCcHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCCCChhhHHHHhhcCCChHHHh-c
Q 019144 161 GFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIA-A 239 (345)
Q Consensus 161 gi~~dG~~~~~Gg~G~~~gd~G~a~~iG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~ 239 (345)
|++.||++++ |.+|.++|+||+.+. .++. |.|+.++|++.+.+ ...+.++.+.... .... .
T Consensus 147 giv~~g~l~~--------G~~g~age~Gh~~v~-----~~g~-c~cG~~GclE~~as---~~al~~~~~~~~~-~~~~~~ 208 (314)
T COG1940 147 GIIVNGKLLR--------GANGNAGEIGHMVVD-----PDGE-CGCGRRGCLETYAS---GRAILRRAAEALE-SEAGEL 208 (314)
T ss_pred EEEECCEEee--------cCCCccccccceEEC-----CCCc-cCCCCCCchHHhcc---HHHHHHHHHhhcc-ccccCc
Confidence 8999999998 555555556665542 2333 56666777777754 5566666321110 0111 2
Q ss_pred chHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEc-CcccCcccccchHHHHHHHHhhCC
Q 019144 240 LVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVG-GVLEANRRWDIGREVVKCILRDYP 318 (345)
Q Consensus 240 ~~~~v~~~a~~gD~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgG-gl~~~~~~~~l~~~~~~~l~~~~~ 318 (345)
..+.+++++.+||+.|++++++++++|+.+|+|++++|| |+.||++| ++....+. +.+.+++.+..+..
T Consensus 209 ~~~~i~~~a~~gd~~a~~~~~~~~~~la~~ianl~~~~~--------P~~IvigG~g~~~~~~~--~~~~l~~~~~~~~~ 278 (314)
T COG1940 209 TAKDIFELAAAGDPLAKEVIERAADYLARGLANLINLLD--------PEVIVIGGGGVSALGDL--LLPRLRKLLAKYLF 278 (314)
T ss_pred CHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCeEEEECcccccchhH--HHHHHHHHHHHhhc
Confidence 357899999999999999999999999999999999999 59999999 76666554 48888888877632
Q ss_pred C----ceeeC---C-CCChHHHHHHHHHHhhh
Q 019144 319 G----AVPIR---P-KVEPAVGAALLAWNSFM 342 (345)
Q Consensus 319 ~----~~i~~---~-~~a~~~GAa~la~~~~~ 342 (345)
. ..+.. . ..++++||++++.+...
T Consensus 279 ~~~~~~~~~~~~~~~~~a~~~ga~~~~~~~~~ 310 (314)
T COG1940 279 PPVLRPRIVEAALGGNDAGLIGAALLALLLLL 310 (314)
T ss_pred chhcccchhhhhcccccccchhHHHHHHHhhh
Confidence 1 12221 2 57889999999886543
No 6
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=100.00 E-value=1.2e-32 Score=257.63 Aligned_cols=268 Identities=40% Similarity=0.585 Sum_probs=218.6
Q ss_pred EEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEeecC
Q 019144 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (345)
Q Consensus 25 lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~pG 104 (345)
||||+|+|||+++++|. +|+++.+....+.|+...+.+++++.+.+.+++++++.+.+..++..+++|++|
T Consensus 1 lGIDgGgTkt~~vl~d~---------~g~il~~~~~~~~n~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~i~~~~~g~aG 71 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDE---------NGNILGRGKGGGANYNSVGFEEAMENIKEAIEEALSQAGLSPDDIAAICIGAAG 71 (271)
T ss_dssp EEEEECSSEEEEEEEET---------TSEEEEEEEES-TTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCEEEEEEEE
T ss_pred CEEeeChheeeeEEEeC---------CCCEEEEEEeCCCCCCCCCcchhhhHHHHHHHHHHHHcCCCccccceeeeeEee
Confidence 79999999999999999 899999998888887656788999999999999999999988889999999999
Q ss_pred CCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhcccCCCCCeEEEEeCccceeeeecCCCCeEEeccCCCCcCCcCcH
Q 019144 105 VNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSG 184 (345)
Q Consensus 105 ~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~~~g~~~~v~v~~GTG~~g~gi~~dG~~~~~Gg~G~~~gd~G~a 184 (345)
...+.....+...+.. .++.+.||+..++++... +++++++.|||++..++..+|+..++|+|||+++|+||+
T Consensus 72 ~~~~~~~~~~~~~~~~-----~~v~~~~Da~~al~~~~~--~~giv~I~GTGS~~~~~~~~g~~~r~gG~G~~~gD~GSg 144 (271)
T PF01869_consen 72 YGRAGDEQEFQEEIVR-----SEVIVVNDAAIALYGATA--EDGIVVIAGTGSIAYGRDRDGRVIRFGGWGHCLGDEGSG 144 (271)
T ss_dssp EEETTTTTHHHHHHHH-----HEEEEEEHHHHHHHHHST--SSEEEEEESSSEEEEEEETTSEEEEEEESCTTTTTTTSH
T ss_pred ecCcccccchhhcceE-----EEEEEEHHHHHHhCCCCC--CcEEEEEcCCCceEEEEEcCCcEEEeCCCCCCcCCCCcH
Confidence 8655433223322221 279999999988886543 689999999999999998899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCCCChhhHHHHhhcCCChHHHhcchHHHHHHHHcCCHHHHHHHHHHHH
Q 019144 185 YGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVVSCAEAGDEVANKILQDSVE 264 (345)
Q Consensus 185 ~~iG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~~a~~gD~~a~~il~~~~~ 264 (345)
+|+|++.++..+..+|++.+.+. + ........++.+++.+++.+++||+.|.+|++++++
T Consensus 145 ~~ig~~~L~~~~~~~d~~~~~~~--------~------------~~~~~~~~~A~fa~~v~~~a~~gd~~a~~Il~~a~~ 204 (271)
T PF01869_consen 145 YWIGRRALRAVLRELDGRAEPTP--------Y------------AKPASNARIAVFAPTVFEAAQQGDEVARDILAEAAD 204 (271)
T ss_dssp HHHHHHHHHHHHHHHTTSSTTSH--------H------------HHTT-HHHHHCTHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHhcCccccCc--------c------------cCCCChhheehhhHHHHHHHHcCCchHHHHHHHHHH
Confidence 99999999999999998865543 0 001244578889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCC---ceeeCCCCChHHHHHHHH
Q 019144 265 ELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPG---AVPIRPKVEPAVGAALLA 337 (345)
Q Consensus 265 ~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~---~~i~~~~~a~~~GAa~la 337 (345)
.|++.+.+++..+++ .++.|++.||++.... + .+++++.|++..+. ..+..+...+++||+++|
T Consensus 205 ~la~~i~~~~~~~~~------~~~~v~l~GGv~~~~~-~--~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 205 ELAELIKAVLKRLGP------EKEPVVLSGGVFKNSP-L--VKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHTCTC------CCCSEEEESGGGGCHH-H--HHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC------CCCeEEEECCccCchH-H--HHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 999999999999985 1223999999997643 3 55566666655333 344557889999999986
No 7
>PRK09557 fructokinase; Reviewed
Probab=100.00 E-value=3.9e-33 Score=264.67 Aligned_cols=271 Identities=19% Similarity=0.113 Sum_probs=205.3
Q ss_pred EEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEee
Q 019144 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~ 102 (345)
++||+|+|+|+++++++|+ +|+++.+.+.+++ . .+++++++.+.+.++++..+.+ .+.+|||++
T Consensus 1 ~~lgidig~t~~~~~l~d~---------~g~i~~~~~~~~~-~--~~~~~~~~~i~~~i~~~~~~~~----~~~gIgi~~ 64 (301)
T PRK09557 1 MRIGIDLGGTKIEVIALDD---------AGEELFRKRLPTP-R--DDYQQTIEAIATLVDMAEQATG----QRGTVGVGI 64 (301)
T ss_pred CEEEEEECCCcEEEEEECC---------CCCEEEEEEecCC-C--CCHHHHHHHHHHHHHHHHhhcC----CceEEEecC
Confidence 4799999999999999999 8999988876553 2 3678889999988888876442 457999999
Q ss_pred cCCCChhH---------H---HHHHHHHHhhCCCCceEEEeCcHHHHHhcccC-----CCCCeEEEEeCccceeeeecCC
Q 019144 103 SGVNHPTD---------Q---QRILNWLRDIFPGNVRLYVHNDALAALASGTM-----GKLHGCVLIAGTGTIAYGFTED 165 (345)
Q Consensus 103 pG~~~~~~---------~---~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~~~-----g~~~~v~v~~GTG~~g~gi~~d 165 (345)
||+++++. | .+|++.|+++|+ .||+++||+|++++++.+ +.++++++.+|||+ |+|++.|
T Consensus 65 pG~vd~~~g~i~~~~~~~~~~~~l~~~l~~~~~--~pv~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igtGi-G~giv~~ 141 (301)
T PRK09557 65 PGSISPYTGLVKNANSTWLNGQPLDKDLSARLN--REVRLANDANCLAVSEAVDGAAAGKQTVFAVIIGTGC-GAGVAIN 141 (301)
T ss_pred cccCcCCCCeEEecCCccccCCCHHHHHHHHHC--CCEEEccchhHHHHHHHHhcccCCCCcEEEEEEccce-EEEEEEC
Confidence 99986432 2 478999999998 899999999999888732 34678999999997 7789999
Q ss_pred CCeEEeccCCCCcCCcCcHHHHHHHHHHHH-HHH---hcCCCCCChhHHHHHHHcCCCChhhHHHHhhcCCChHHHhcch
Q 019144 166 GRDARAAGAGPILGDWGSGYGIAAQALTAV-IRA---YDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALV 241 (345)
Q Consensus 166 G~~~~~Gg~G~~~gd~G~a~~iG~~~~~~~-~~~---~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 241 (345)
|++++ |..|.++|+||..+... ... .++..|.|+..+|++.+.+ ...|.+.+..... .. ...
T Consensus 142 G~l~~--------G~~g~aGEiGH~~v~~~~~~~~~~~~g~~c~cG~~GclE~~~S---~~al~~~~~~~~~-~~--~~~ 207 (301)
T PRK09557 142 GRVHI--------GGNGIAGEWGHNPLPWMDEDELRYRNEVPCYCGKQGCIETFIS---GTGFATDYRRLSG-KA--LKG 207 (301)
T ss_pred CEEEe--------cCCCCCcccCceecccccccccccCCCCcCCCCCCCEEeEEEc---HHHHHHHHHHhcc-CC--CCH
Confidence 99997 55566666666654210 000 1455677777777777664 4566654332110 01 124
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhC-C--
Q 019144 242 PVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDY-P-- 318 (345)
Q Consensus 242 ~~v~~~a~~gD~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~-~-- 318 (345)
+.+++++++||+.|++++++++++|+.+++|+++.|| |+.|||+|++... +.+ .+.+++.++++. +
T Consensus 208 ~~l~~~~~~gd~~a~~~l~~~~~~La~~l~~l~~~ld--------P~~IvlgG~~~~~-~~~--~~~l~~~~~~~~~~~~ 276 (301)
T PRK09557 208 SEIIRLVEEGDPVAELAFRRYEDRLAKSLAHVINILD--------PDVIVLGGGMSNV-DRL--YPTLPALLKQYVFGGE 276 (301)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCEEEEcCcccch-HHH--HHHHHHHHHHHhcccc
Confidence 6889999999999999999999999999999999999 5999999998874 444 778888888762 2
Q ss_pred -CceeeC---CCCChHHHHHHHH
Q 019144 319 -GAVPIR---PKVEPAVGAALLA 337 (345)
Q Consensus 319 -~~~i~~---~~~a~~~GAa~la 337 (345)
.++|+. .++++++||+++.
T Consensus 277 ~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 277 CETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred cCCeEEEcccCCchhhhhhhHhh
Confidence 344544 3678899999864
No 8
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=100.00 E-value=1.6e-32 Score=259.23 Aligned_cols=265 Identities=16% Similarity=0.088 Sum_probs=201.2
Q ss_pred EEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEee
Q 019144 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~ 102 (345)
.++|+|+|+|+++++++|+ +|+++.+.+.+.+.. .+++++++.+.+.++++.. ++.+|||++
T Consensus 2 ~~lgvdig~~~i~~~l~dl---------~g~i~~~~~~~~~~~--~~~~~~~~~i~~~i~~~~~-------~~~~igi~~ 63 (291)
T PRK05082 2 TTLAIDIGGTKIAAALVGE---------DGQIRQRRQIPTPAS--QTPEALRQALSALVSPLQA-------QADRVAVAS 63 (291)
T ss_pred cEEEEEECCCEEEEEEEcC---------CCcEEEEEEecCCCC--CCHHHHHHHHHHHHHHhhh-------cCcEEEEeC
Confidence 3799999999999999999 899998877655322 3577788888888877643 356899999
Q ss_pred cCCCChh-----------HH--HHHHHHHHhhCCCCceEEEeCcHHHHHhcccC----CCCCeEEEEeCccceeeeecCC
Q 019144 103 SGVNHPT-----------DQ--QRILNWLRDIFPGNVRLYVHNDALAALASGTM----GKLHGCVLIAGTGTIAYGFTED 165 (345)
Q Consensus 103 pG~~~~~-----------~~--~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~~~----g~~~~v~v~~GTG~~g~gi~~d 165 (345)
||+++.. .| .+|++.|+++|+ .||+++||+|++++++++ +.++++++.+|||+ |+|++.|
T Consensus 64 pG~vd~~~~~~~~~~~~~~w~~~~l~~~l~~~~~--~pv~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig~Gi-G~giv~~ 140 (291)
T PRK05082 64 TGIINDGILTALNPHNLGGLLHFPLVQTLEQLTD--LPTIALNDAQAAAWAEYQALPDDIRNMVFITVSTGV-GGGIVLN 140 (291)
T ss_pred cccccCCeeEEecCCCCccccCCChHHHHHHHhC--CCEEEECcHHHHHHHHHHhcCCCCCCEEEEEECCCc-ceEEEEC
Confidence 9987421 12 378999999998 899999999999888742 45689999999997 7789999
Q ss_pred CCeEEeccCCCCcCCcCcHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCCCChhhHHHHhhcCCChHHHhcchHHHH
Q 019144 166 GRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAALVPVVV 245 (345)
Q Consensus 166 G~~~~~Gg~G~~~gd~G~a~~iG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~ 245 (345)
|++++ |.+|.++|+||..+. .++..|.|+..+|++.+.+ ...|.+...... . ....+.++
T Consensus 141 G~~~~--------G~~g~AGEiGh~~v~-----~~g~~c~CG~~GclE~~~S---~~al~~~~~~~~--~--~~~~~~i~ 200 (291)
T PRK05082 141 GKLLT--------GPGGLAGHIGHTLAD-----PHGPVCGCGRRGCVEAIAS---GRAIAAAAQGWL--A--GCDAKTIF 200 (291)
T ss_pred CEEee--------CCCCccccccceEec-----CCCCCCCCCCcCchhhhcC---HHHHHHHHHHhh--c--CCCHHHHH
Confidence 99987 555555666665432 3455667777777777754 456655322100 0 11246788
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhC--CCceee
Q 019144 246 SCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDY--PGAVPI 323 (345)
Q Consensus 246 ~~a~~gD~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~--~~~~i~ 323 (345)
+++++||+.|++++++++++|+..++|++++|| |+.|||+|++.. .+.+ ++.+++.+++.. ..++|.
T Consensus 201 ~~~~~gd~~a~~~~~~~~~~la~~l~~l~~~~d--------pe~IvlgG~~~~-~~~~--~~~i~~~l~~~~~~~~~~i~ 269 (291)
T PRK05082 201 ERAGQGDEQAQALINRSAQAIARLIADLKATLD--------CQCVVLGGSVGL-AEGY--LELVQAYLAQEPAIYHVPLL 269 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCEEEEcCcccc-HHHH--HHHHHHHHHhcccccCCeEE
Confidence 999999999999999999999999999999999 599999999765 3444 788888888752 234454
Q ss_pred C---CCCChHHHHHHHHHH
Q 019144 324 R---PKVEPAVGAALLAWN 339 (345)
Q Consensus 324 ~---~~~a~~~GAa~la~~ 339 (345)
. .++++++||+.++++
T Consensus 270 ~s~~~~~~~~~GAa~~~~~ 288 (291)
T PRK05082 270 AAHYRHDAGLLGAALWAQG 288 (291)
T ss_pred ECccCCchhhhhHHHHhcc
Confidence 4 357789999999865
No 9
>PRK09698 D-allose kinase; Provisional
Probab=100.00 E-value=2e-32 Score=259.83 Aligned_cols=271 Identities=15% Similarity=0.172 Sum_probs=204.4
Q ss_pred CccEEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeE
Q 019144 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC 99 (345)
Q Consensus 20 ~~~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Ig 99 (345)
|+.+++|+|+|+|+++++++|+ +|+++.+.+.+++.. .+++. ++.+.+.+++++++.+ .++.+||
T Consensus 2 ~~~~~lgidig~t~i~~~l~d~---------~g~i~~~~~~~~~~~--~~~~~-~~~l~~~i~~~~~~~~---~~i~gig 66 (302)
T PRK09698 2 QKNVVLGIDMGGTHIRFCLVDA---------EGEILHCEKKRTAEV--IAPDL-VSGLGEMIDEYLRRFN---ARCHGIV 66 (302)
T ss_pred CccEEEEEEcCCcEEEEEEEcC---------CCCEEEEEEeCCccc--cchHH-HHHHHHHHHHHHHHcC---CCeeEEE
Confidence 5679999999999999999999 899999887765432 34454 8999999999998764 4789999
Q ss_pred EeecCCCChhH-------------H--HHHHHHHHhhCCCCceEEEeCcHHHHHhcccC----CCCCeEEEEeCccceee
Q 019144 100 LAVSGVNHPTD-------------Q--QRILNWLRDIFPGNVRLYVHNDALAALASGTM----GKLHGCVLIAGTGTIAY 160 (345)
Q Consensus 100 ig~pG~~~~~~-------------~--~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~~~----g~~~~v~v~~GTG~~g~ 160 (345)
|++||+++++. | .+|++.|+++|+ .||+++||+|++++++.+ +.++.+++.+|||+ |+
T Consensus 67 ia~pG~vd~~~g~i~~~~~~~~~~~~~~~l~~~l~~~~~--~pv~v~NDa~aaa~~E~~~~~~~~~~~~~v~lgtGI-G~ 143 (302)
T PRK09698 67 MGFPALVSKDRRTVISTPNLPLTALDLYDLADKLENTLN--CPVFFSRDVNLQLLWDVKENNLTQQLVLGAYLGTGM-GF 143 (302)
T ss_pred EeCCcceeCCCCEEEecCCCCccccccCCHHHHHHHHhC--CCEEEcchHhHHHHHHHHhcCCCCceEEEEEecCce-EE
Confidence 99999975321 2 368999999998 899999999998887631 34578999999997 77
Q ss_pred eecCCCCeEEeccCCCCcCCcCcHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCCCChhhHHHHhhcCCChHHHhcc
Q 019144 161 GFTEDGRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAAL 240 (345)
Q Consensus 161 gi~~dG~~~~~Gg~G~~~gd~G~a~~iG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (345)
|++.||++++ |..|.++|+||..+. .++..|.|+..+|++.+.+ ...|.+++...... ..
T Consensus 144 giv~~G~~~~--------G~~g~agEiGh~~v~-----~~~~~C~CG~~gclE~~~S---~~al~~~~~~~~~~----~~ 203 (302)
T PRK09698 144 AVWMNGAPWT--------GAHGVAGELGHIPLG-----DMTQHCGCGNPGCLETNCS---GMALRRWYEQQPRD----YP 203 (302)
T ss_pred EEEECCEEee--------CCCCCccccCceEee-----CCCcccCCCCccchHhhcC---HHHHHHHHHHhcCC----CC
Confidence 8999999997 556666666666542 2445566776777777754 45666554321110 11
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhC--C
Q 019144 241 VPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDY--P 318 (345)
Q Consensus 241 ~~~v~~~a~~gD~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~--~ 318 (345)
.+.++++ .+|+ .+++++.++|+..|+|++++|| |+.|||+|++....+.+ .+.+++.++++. |
T Consensus 204 ~~~l~~~--~~~~---~~~~~~~~~la~~l~~li~~ld--------P~~IvlgG~~~~~~~~~--~~~l~~~~~~~~~~~ 268 (302)
T PRK09698 204 LSDLFVH--AGDH---PFIQSLLENLARAIATSINLFD--------PDAIILGGGVMDMPAFP--RETLIAMIQKYLRKP 268 (302)
T ss_pred HHHHHHH--cCCH---HHHHHHHHHHHHHHHHHHHHhC--------CCEEEEcCccccCchhH--HHHHHHHHHHHccCc
Confidence 3455654 4665 4789999999999999999999 59999999998875543 788888888762 2
Q ss_pred ----CceeeC---CCCChHHHHHHHHHHhhhc
Q 019144 319 ----GAVPIR---PKVEPAVGAALLAWNSFMN 343 (345)
Q Consensus 319 ----~~~i~~---~~~a~~~GAa~la~~~~~~ 343 (345)
.++|.. .++++++||++++++++.+
T Consensus 269 ~~~~~~~i~~~~~~~~a~~~GAa~~~~~~~~~ 300 (302)
T PRK09698 269 LPYEVVRFIYASSSDFNGAQGAAILAHQRFLP 300 (302)
T ss_pred cccCCcEEEECCcCCcccHHhHHHHHHHhhcc
Confidence 244543 3678899999999988765
No 10
>PRK00292 glk glucokinase; Provisional
Probab=99.96 E-value=8.9e-29 Score=236.44 Aligned_cols=272 Identities=13% Similarity=0.025 Sum_probs=178.7
Q ss_pred cEEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHH-cCCCccccceeEE
Q 019144 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLK-SGSNRSAVRAVCL 100 (345)
Q Consensus 22 ~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~-~~~~~~~i~~Igi 100 (345)
.++|++|+|+|+++++++|++ .+.++.+.+.++.. .+.+.+.+.+++++ .+ .++.+|||
T Consensus 2 ~~~lgiDIGgT~i~~~l~~~~--------~~~~~~~~~~~~~~---------~~~~~~~l~~~l~~~~~---~~~~gigI 61 (316)
T PRK00292 2 KPALVGDIGGTNARFALCDWA--------NGEIEQIKTYATAD---------YPSLEDAIRAYLADEHG---VQVRSACF 61 (316)
T ss_pred ceEEEEEcCccceEEEEEecC--------CCceeeeEEEecCC---------CCCHHHHHHHHHHhccC---CCCceEEE
Confidence 479999999999999999962 45556666654431 12244455555554 22 25889999
Q ss_pred eecCCCChhH-------HHHHHHHHHhhCCCCce-EEEeCcHHHHHhcccC---------C------CCCeEEEEeCccc
Q 019144 101 AVSGVNHPTD-------QQRILNWLRDIFPGNVR-LYVHNDALAALASGTM---------G------KLHGCVLIAGTGT 157 (345)
Q Consensus 101 g~pG~~~~~~-------~~~l~~~L~~~~~~~~p-V~v~NDa~~a~~~~~~---------g------~~~~v~v~~GTG~ 157 (345)
|+||+++++. |....+.|+++|+ .| |+++||+|++++++.+ + .++.+++.+|||+
T Consensus 62 g~pG~vd~~~i~~~n~~w~~~~~~l~~~~~--~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTGi 139 (316)
T PRK00292 62 AIAGPVDGDEVRMTNHHWAFSIAAMKQELG--LDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTGL 139 (316)
T ss_pred EEeCcccCCEEEecCCCcccCHHHHHHHhC--CCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCcc
Confidence 9999986421 3223588999997 75 9999999999998742 2 2578999999998
Q ss_pred eeeeecCCC---CeEEeccCCCCcCCcCcHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCCCChhhHHHHhh---cC
Q 019144 158 IAYGFTEDG---RDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTY---VD 231 (345)
Q Consensus 158 ~g~gi~~dG---~~~~~Gg~G~~~gd~G~a~~iG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~ 231 (345)
|+|++.|| ....+||+||+..+..+.-+..-.. +.++ ++-+.|++.+.+ ...|.+... ..
T Consensus 140 -G~giv~~g~~g~~g~agE~GH~~~~~~~~~~~~~~~------~~c~----~~~~gclE~~~S---g~~L~~~~~~~~~~ 205 (316)
T PRK00292 140 -GVAGLVPVDGRWIVLPGEGGHVDFAPRSEEEAQILQ------YLRA----EFGHVSAERVLS---GPGLVNLYRAICKA 205 (316)
T ss_pred -eEEEEEecCCceEEccCCcccccCCCCChHHHHHHH------HHHH----hcCCceeEeeec---HHhHHHHHHHHHhh
Confidence 66787776 2234899999877654332211000 0000 000223344432 334443221 00
Q ss_pred CChHHHhcchHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCc-cEEEEcCcccCcccccchH-H
Q 019144 232 PSWARIAALVPVVVSCAEAGD-EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSF-PLVMVGGVLEANRRWDIGR-E 308 (345)
Q Consensus 232 ~~~~~~~~~~~~v~~~a~~gD-~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~-~IVlgGgl~~~~~~~~l~~-~ 308 (345)
.....-....+.|++++++|| +.|++++++++++||.+++|+++.|| |+ .|||+||+.....++ +.+ .
T Consensus 206 ~~~~~~~~~~~~i~~~a~~gdd~~A~~~~~~~~~~lg~~i~~l~~~~~--------P~~~vvi~Gg~~~~~~~~-~~~~~ 276 (316)
T PRK00292 206 DGREPELLTPADITERALAGSCPLCRRTLSLFCVILGRVAGNLALTLG--------ARGGVYIAGGIVPRFLEF-FKASG 276 (316)
T ss_pred cCCCcccCCHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHhc--------CCceEEEeCchHHhHHhh-hccHH
Confidence 000000013578999999998 99999999999999999999999999 47 899999998643333 355 6
Q ss_pred HHHHHHhhC--C----C--ceeeCCCCChHHHHHHHHH
Q 019144 309 VVKCILRDY--P----G--AVPIRPKVEPAVGAALLAW 338 (345)
Q Consensus 309 ~~~~l~~~~--~----~--~~i~~~~~a~~~GAa~la~ 338 (345)
+++.+.++. + . +.+...++++++|||.++.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~i~~~~~~~agl~GAa~~~~ 314 (316)
T PRK00292 277 FRAAFEDKGRFSAYLADIPVYVITHPQPGLLGAGAYLR 314 (316)
T ss_pred HHHHHhcCCChhhHHhcCCEEEEcCCChHHHHHHHHHh
Confidence 777777642 2 1 2233456899999998864
No 11
>PRK12408 glucokinase; Provisional
Probab=99.96 E-value=1.9e-28 Score=236.11 Aligned_cols=273 Identities=18% Similarity=0.114 Sum_probs=175.6
Q ss_pred cEEEEEecCccceeeEEEcCccCCCCCCCCCC------eeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCcccc
Q 019144 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLP------VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAV 95 (345)
Q Consensus 22 ~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~------i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i 95 (345)
.++|++|||||+++++++|. ++. ++...+.++... +.+.+.+++++++ . .++
T Consensus 16 ~~~L~~DIGGT~i~~al~d~---------~g~~~~~~~~~~~~~~~t~~~---------~~~~~~i~~~~~~-~---~~~ 73 (336)
T PRK12408 16 ESFVAADVGGTHVRVALVCA---------SPDAAKPVELLDYRTYRCADY---------PSLAAILADFLAE-C---APV 73 (336)
T ss_pred ccEEEEEcChhhhheeEEec---------cCCccccccccceeEecCCCc---------cCHHHHHHHHHhc-C---CCc
Confidence 46899999999999999997 555 344444333221 2234445566654 1 247
Q ss_pred ceeEEeecCC-CChh-------HHHHHHHHHHhhCCCCc-eEEEeCcHHHHHhccc-C-------------CC-CCeEEE
Q 019144 96 RAVCLAVSGV-NHPT-------DQQRILNWLRDIFPGNV-RLYVHNDALAALASGT-M-------------GK-LHGCVL 151 (345)
Q Consensus 96 ~~Igig~pG~-~~~~-------~~~~l~~~L~~~~~~~~-pV~v~NDa~~a~~~~~-~-------------g~-~~~v~v 151 (345)
.+||||+||+ ++.. .|..+.+.|+++|+ . ||+++||+|++++++. . +. .+.+++
T Consensus 74 ~~igIg~pG~~~~~g~v~~~nl~w~~~~~~l~~~~~--~~~V~l~ND~naaa~gE~~~~~~~~~~~~g~~~~~~~~~~~i 151 (336)
T PRK12408 74 RRGVIASAGYALDDGRVITANLPWTLSPEQIRAQLG--LQAVHLVNDFEAVAYAAPYMEGNQVLQLSGPAQAAAGPALVL 151 (336)
T ss_pred CEEEEEecCCceECCEEEecCCCCccCHHHHHHHcC--CCeEEEeecHHHHHcccccCCHhHeeeecCCCCCCCCcEEEE
Confidence 8999999998 3211 13446789999997 7 5999999999999873 2 22 468899
Q ss_pred EeCccceeeeecCCCC---eEEeccCCCCcCCcCcHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCCCChhhHHHHh
Q 019144 152 IAGTGTIAYGFTEDGR---DARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWT 228 (345)
Q Consensus 152 ~~GTG~~g~gi~~dG~---~~~~Gg~G~~~gd~G~a~~iG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 228 (345)
++|||+ |+|++.||+ ...+||+||+..+..+.-+. .. ..+.+++ .-..+++.+.+ ...|.+.+
T Consensus 152 ~~GTGi-Gggivi~g~~g~~~~agE~GH~~~~~~~~~~~--~l----~~~~~~~----~~~~~~E~~~S---g~gL~~~~ 217 (336)
T PRK12408 152 GPGTGL-GAALWIPNGGRPVVLPTEAGQAALAAASELEM--QL----LQHLLRT----RTHVPIEHVLS---GPGLLNLY 217 (336)
T ss_pred ECCCcc-eEEEEEcCCCceeeecCccccccCCCCCHHHH--HH----HHHHHhh----CCceeHhheec---HHHHHHHH
Confidence 999998 667888875 34599999986644322111 00 0001111 01123444432 33444332
Q ss_pred hc---CCChHHHhcchHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcc-EEEEcCcccCcccc
Q 019144 229 YV---DPSWARIAALVPVVVSCAEAG-DEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFP-LVMVGGVLEANRRW 303 (345)
Q Consensus 229 ~~---~~~~~~~~~~~~~v~~~a~~g-D~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~-IVlgGgl~~~~~~~ 303 (345)
.. ...........+.|+++++++ |+.|++++++++++||..+.|+++.|| |+. |||+||+......+
T Consensus 218 ~~~~~~~~~~~~~~~~~~v~~~a~~ggD~~A~~~~~~~~~~La~~i~nl~~~ld--------Pe~GIvIGGGIs~~~~~~ 289 (336)
T PRK12408 218 RALCALRGATPVHASPAAITAAALAGDDALAHEALQVFCGFLGSVVGDMALAYG--------ARGGVYLAGGILPQIADF 289 (336)
T ss_pred HHHHhhcCCCcccCCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCceEEEECchhHhHHhh
Confidence 11 000000001357888888875 999999999999999999999999999 598 99999998652233
Q ss_pred cchHH--HHHHHHhh-C----CCceee--CCCCChHHHHHHHHHHhh
Q 019144 304 DIGRE--VVKCILRD-Y----PGAVPI--RPKVEPAVGAALLAWNSF 341 (345)
Q Consensus 304 ~l~~~--~~~~l~~~-~----~~~~i~--~~~~a~~~GAa~la~~~~ 341 (345)
+.++ +++.+.+. + ..++|. ...+++++||+.+++++.
T Consensus 290 -l~~~~f~~~~~~~~~~~~~~~~~~I~~~~~~~agl~GAa~~~~~~~ 335 (336)
T PRK12408 290 -LARSDFVERFLNKGPMRPALEQVPVKLVEHGQLGVLGAASWYLQHQ 335 (336)
T ss_pred -hcCHHHHHHHhccCchhhHhcCCCEEEEeCCChHHHHHHHHHHhhC
Confidence 3444 66666553 1 123333 334789999998887653
No 12
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=99.96 E-value=6.8e-29 Score=230.51 Aligned_cols=224 Identities=14% Similarity=0.050 Sum_probs=168.0
Q ss_pred EEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEee
Q 019144 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~ 102 (345)
+++|+|+|+|+++++++|+ +++++.+.+.++. . .+++++++.+.++++++..... .+.+|||++
T Consensus 1 ~~lgidiggt~i~~~l~d~---------~g~i~~~~~~~~~-~--~~~~~~~~~i~~~i~~~~~~~~----~~~gIgv~~ 64 (256)
T PRK13311 1 MYYGFDMGGTKIELGVFDE---------NLQRIWHKRVPTP-R--EDYPQLLQILRDLTEEADTYCG----VQGSVGIGI 64 (256)
T ss_pred CEEEEEECCCcEEEEEECC---------CCCEEEEEEecCC-C--cCHHHHHHHHHHHHHHHHhhcC----CCceEEEEe
Confidence 4699999999999999999 8999988887654 2 4677888888888777754322 345899999
Q ss_pred cCCCChhH----------H--HHHHHHHHhhCCCCceEEEeCcHHHHHhcccC-----CCCCeEEEEeCccceeeeecCC
Q 019144 103 SGVNHPTD----------Q--QRILNWLRDIFPGNVRLYVHNDALAALASGTM-----GKLHGCVLIAGTGTIAYGFTED 165 (345)
Q Consensus 103 pG~~~~~~----------~--~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~~~-----g~~~~v~v~~GTG~~g~gi~~d 165 (345)
||+++++. | .+|++.|+++|+ .||+++||+|++++++++ +.++++++++|||+ |+|++.|
T Consensus 65 pG~vd~~~g~i~~~~~~~w~~~~l~~~l~~~~~--~pV~leNDanaaAlaE~~~g~~~~~~~~v~i~lgtGi-G~giv~~ 141 (256)
T PRK13311 65 PGLPNADDGTVFTANVPSAMGQPLQADLSRLIQ--REVRIDNDANCFALSEAWDPEFRTYPTVLGLILGTGV-GGGLIVN 141 (256)
T ss_pred cCcEECCCCEEEccCCCcccCCChHHHHHHHHC--CCEEEEchhhHHHHHHHHhcCCCCCCcEEEEEECcCe-EEEEEEC
Confidence 99865331 2 478999999997 899999999999988742 35789999999997 7789999
Q ss_pred CCeEEeccCCCCcCCcCcHHHHHHHHHHHHH-----HHhcCCCCCChhHHHHHHHcCCCChhhHHHHhhcCCChHHHhcc
Q 019144 166 GRDARAAGAGPILGDWGSGYGIAAQALTAVI-----RAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAAL 240 (345)
Q Consensus 166 G~~~~~Gg~G~~~gd~G~a~~iG~~~~~~~~-----~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 240 (345)
|++++ |..|.++|+||..+.... ....+..|.|+..+|++.+.+ ...|.+....... .. ..
T Consensus 142 G~l~~--------G~~g~AGEiGh~~v~~~~~~~~~~~~~~~~c~cG~~GclE~~~S---~~ai~~~~~~~~~-~~--~~ 207 (256)
T PRK13311 142 GSIVS--------GRNHITGEFGHFRLPVDALDILGADIPRVPCGCGHRGCIENYIS---GRGFEWMYSHFYQ-HT--LP 207 (256)
T ss_pred CEEec--------CCCCCCccceeEEeccCcccccccCCCCCcCCCCCccchhheec---HHHHHHHHHHhcc-CC--CC
Confidence 99997 555666666665431000 001244566777778777764 4566543221010 01 13
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 019144 241 VPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSL 279 (345)
Q Consensus 241 ~~~v~~~a~~gD~~a~~il~~~~~~Lg~~l~~lv~~ld~ 279 (345)
.+.|++++++||+.|++++++++++||..++|++++|++
T Consensus 208 ~~~l~~~~~~gd~~a~~~~~~~~~~la~~i~nl~~~~~~ 246 (256)
T PRK13311 208 ATDIIAHYAAGEPKAVAHVERFMDVLAVCLGNLLTMLGS 246 (256)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 578999999999999999999999999999999999994
No 13
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=99.94 E-value=3.2e-26 Score=237.86 Aligned_cols=277 Identities=14% Similarity=0.011 Sum_probs=186.0
Q ss_pred cEEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEe
Q 019144 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (345)
Q Consensus 22 ~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig 101 (345)
.++||+|+|||+++++++|. +|+++.+.+.++... +.+.+.+++++++.+. .++.+||||
T Consensus 18 ~~~L~iDIGGT~ir~al~~~---------~g~i~~~~~~~t~~~---------~~~~~~i~~~l~~~~~--~~~~~igig 77 (638)
T PRK14101 18 GPRLLADVGGTNARFALETG---------PGEITQIRVYPGADY---------PTLTDAIRKYLKDVKI--GRVNHAAIA 77 (638)
T ss_pred CCEEEEEcCchhheeeeecC---------CCcccceeEEecCCC---------CCHHHHHHHHHHhcCC--CCcceEEEE
Confidence 37999999999999999998 788888877655322 3455666777766543 258899999
Q ss_pred ecCCCChhH-------H-HHHHHHHHhhCCCCc-eEEEeCcHHHHHhcc---------cC----CCCCeEEEEe--Cccc
Q 019144 102 VSGVNHPTD-------Q-QRILNWLRDIFPGNV-RLYVHNDALAALASG---------TM----GKLHGCVLIA--GTGT 157 (345)
Q Consensus 102 ~pG~~~~~~-------~-~~l~~~L~~~~~~~~-pV~v~NDa~~a~~~~---------~~----g~~~~v~v~~--GTG~ 157 (345)
+||+++.+. | .++ +.|+++|+ . ||+++||+|++++++ +. +.++++++++ |||+
T Consensus 78 ~pGpVd~~~~~~~nl~w~~~~-~~l~~~~g--~~~v~l~ND~~aaA~ge~~l~~~e~~~~G~g~~~~~~~~~~lGtGTGl 154 (638)
T PRK14101 78 IANPVDGDQVRMTNHDWSFSI-EATRRALG--FDTLLVVNDFTALAMALPGLTDAQRVQVGGGTRRQNSVIGLLGPGTGL 154 (638)
T ss_pred EecCccCCeeeecCCCcEecH-HHHHHHcC--CCeEEEEchHHHHHcCCccCCHHHeEEeCCCCCCCCCcEEEEECCccc
Confidence 999976432 2 344 78999997 6 589999999999983 22 3456777776 5555
Q ss_pred eeeee-cCCCC-eEEeccCCCCcCCcCcHHHHHHH-HHHHHHHHhcCCCCCChhHHHHHHHcCCCChhhHHHH---hhcC
Q 019144 158 IAYGF-TEDGR-DARAAGAGPILGDWGSGYGIAAQ-ALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGW---TYVD 231 (345)
Q Consensus 158 ~g~gi-~~dG~-~~~~Gg~G~~~gd~G~a~~iG~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~ 231 (345)
+++++ +.+|+ ++..+|+||+.......-+.... +++. ..++ .|++.+++ ...|.+. ....
T Consensus 155 G~a~lv~~~g~~~~~g~E~GH~~~~~~~~~e~~~~~~~~~----~~g~-------~~~E~~~S---g~gL~~~~~~~~~~ 220 (638)
T PRK14101 155 GVSGLIPADDRWIALGSEGGHASFAPQDEREDLVLQYARK----KYPH-------VSFERVCA---GPGMEIIYRALAAR 220 (638)
T ss_pred eeeEEEecCCeeEECCCCccccCCCCCCHHHHHHHHHHHH----hcCc-------ceeeeecc---hhhHHHHHHHHHhh
Confidence 43445 36777 77789999986544332111100 0000 0010 11222221 2222221 1110
Q ss_pred CChH-HHhcchHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchH-HH
Q 019144 232 PSWA-RIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGR-EV 309 (345)
Q Consensus 232 ~~~~-~~~~~~~~v~~~a~~gD~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~-~~ 309 (345)
.... .-....++|++++++|||.|++++++++++||..+.|+++.+|| |+.|||+||+.....++ +.+ .|
T Consensus 221 ~~~~~~~~~~~~~i~~~a~~gd~~A~~~~~~~~~~lg~~~~nl~~~~~~-------p~~vvigGGIs~~~~~~-l~~~~f 292 (638)
T PRK14101 221 DKKRVAANVDTAEIVERAHAGDALALEAVECFCAILGTFAGNLALTLGA-------LGGIYIGGGVVPKLGEL-FTRSSF 292 (638)
T ss_pred cCCCCcCcCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CCcEEEeCcHHHHHHHH-cChHHH
Confidence 0000 00013578999999999999999999999999999999999985 69999999998654444 343 68
Q ss_pred HHHHHhhCC--------CceeeCCCCChHHHHHHHHHHhhhc
Q 019144 310 VKCILRDYP--------GAVPIRPKVEPAVGAALLAWNSFMN 343 (345)
Q Consensus 310 ~~~l~~~~~--------~~~i~~~~~a~~~GAa~la~~~~~~ 343 (345)
++.+....+ ++.++..++.+++||+.++.+.+.+
T Consensus 293 ~~~f~~kg~~~~~~~~ipv~~i~~~~~~l~Gaa~~~~~~~~~ 334 (638)
T PRK14101 293 RARFEAKGRFEAYLANIPTYLITAEYPAFLGVSAILAEQLSN 334 (638)
T ss_pred HHHHHhCCChHHHHhcCCEEEEeCCChhHHHHHHHHHHHhcc
Confidence 888766522 3667777899999999998887654
No 14
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=99.92 E-value=1.2e-24 Score=208.03 Aligned_cols=274 Identities=14% Similarity=0.022 Sum_probs=166.8
Q ss_pred EEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCC-ccccceeEEeec
Q 019144 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSN-RSAVRAVCLAVS 103 (345)
Q Consensus 25 lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~-~~~i~~Igig~p 103 (345)
|.+|+|||+++++++|. ++.++.+....+. . .++.+.+.+++++++.+.. ...+.+++||+|
T Consensus 1 l~~DIGGT~i~~glvd~---------~g~~l~~~~~~~~----~----~~~~l~~~i~~~l~~~~~~~~~~~~~~~Igi~ 63 (316)
T TIGR00749 1 LVGDIGGTNARLALCEI---------APGEISQAKTYSG----L----DFPSLEAVVRVYLEEHKVELKDPIAKGCFAIA 63 (316)
T ss_pred CeEecCcceeeEEEEec---------CCCceeeeEEEec----C----CCCCHHHHHHHHHHhcccccCCCcCeEEEEEe
Confidence 57899999999999997 6655544332111 1 1345666666666654322 123567899999
Q ss_pred CCCChh-------HH-HHHHHHHHhhCCCCc-eEEEeCcHHHHHhcc--------c-----CCCCCeEEEEeCccce-ee
Q 019144 104 GVNHPT-------DQ-QRILNWLRDIFPGNV-RLYVHNDALAALASG--------T-----MGKLHGCVLIAGTGTI-AY 160 (345)
Q Consensus 104 G~~~~~-------~~-~~l~~~L~~~~~~~~-pV~v~NDa~~a~~~~--------~-----~g~~~~v~v~~GTG~~-g~ 160 (345)
|+++.. .| .++. .|++.|+ . ||.++||+|++++++ . .+.++++++++|||++ |.
T Consensus 64 Gpv~~~~v~~~nl~w~~~~~-~l~~~~g--~~~V~l~ND~naaa~ge~~l~~~~~~~~g~~~~~~~~~~v~lGtGtG~G~ 140 (316)
T TIGR00749 64 CPITGDWVAMTNHTWAFSIA-ELKQNLG--FSHLEIINDFTAVSYAIPGLKKEDLIQFGGAEPVEGKPIAILGAGTGLGV 140 (316)
T ss_pred CcccCCEEEecCCCCeeCHH-HHHHhcC--CCeEEEEecHHHHHcCCCCCCHHHeEEeCCCCCCCCCcEEEEecCCCcee
Confidence 986422 13 5774 8888897 6 699999999999986 3 2345677877755542 22
Q ss_pred eecC---CCCeEE-eccCCCCcCCcCcHHHHH-HHHHHH--HHHHhcCCCCCChhHHHHHHHcCCCChhhHHHHhhcCCC
Q 019144 161 GFTE---DGRDAR-AAGAGPILGDWGSGYGIA-AQALTA--VIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPS 233 (345)
Q Consensus 161 gi~~---dG~~~~-~Gg~G~~~gd~G~a~~iG-~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 233 (345)
+++. ||+++. +||+|||.......-+.. .+.+.. ...+.+...|.+++.+........ ..... .....
T Consensus 141 ~~vi~~~~g~l~~~agE~GH~~~~~~~~~~~~~~~~l~~~~~~g~~E~~~Sg~gl~~~~~~~~~~-~~~~~----~~~~~ 215 (316)
T TIGR00749 141 AHLIHQVDGRWVVLPGEGGHVDFAPNSELEAIILEYLRAKIGHVSAERVLSGPGLVNIYEALVKA-DPERQ----FNKLP 215 (316)
T ss_pred eEEEEcCCCCEEECCCCcccccCCCCCHHHHHHHHHHHHhcCCceeeeeecHHHHHHHHHHHHhh-cCccc----ccccc
Confidence 3345 899876 999999965442211100 000000 000112222222332222211100 00000 00000
Q ss_pred hHHHhcchHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCc-cEEEEcCcccCcccccchH-HHH
Q 019144 234 WARIAALVPVVVSCAEAGD-EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSF-PLVMVGGVLEANRRWDIGR-EVV 310 (345)
Q Consensus 234 ~~~~~~~~~~v~~~a~~gD-~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~-~IVlgGgl~~~~~~~~l~~-~~~ 310 (345)
... ...+.|++++++|| +.|++++++++++||..++|++++||| + .++|.||+.....++ +.+ .|+
T Consensus 216 ~~~--~~~~~I~~aa~~Gdd~~A~~~~~~~~~~lg~~i~nl~~~ldp--------eggv~v~GG~~~~~~~~-~~~~~f~ 284 (316)
T TIGR00749 216 QEN--LKPKDISERALAGSCTDCRRALSLFCVIYGRFAGNLALNLGT--------RGGVYIAGGIVPRFIEF-FKASGFR 284 (316)
T ss_pred ccc--CCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC--------CCcEEEECcHHHhHHhh-hCchHHH
Confidence 001 13578999999997 999999999999999999999999995 6 688888887543334 344 677
Q ss_pred HHHHhhCC--------CceeeCCCCChHHHHH
Q 019144 311 KCILRDYP--------GAVPIRPKVEPAVGAA 334 (345)
Q Consensus 311 ~~l~~~~~--------~~~i~~~~~a~~~GAa 334 (345)
+.++.+.| ++.++..++.+++|||
T Consensus 285 ~~~~~~~~~~~~~~~~pv~~i~~~~~~l~G~~ 316 (316)
T TIGR00749 285 AAFEDKGRMKEYVHDIPVYVVLHDNPGLLGAG 316 (316)
T ss_pred HHHhccCChhHHHhhCCEEEEcCCCccccCCC
Confidence 77765521 3566777888888874
No 15
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=99.84 E-value=1.9e-21 Score=170.40 Aligned_cols=158 Identities=18% Similarity=0.168 Sum_probs=124.0
Q ss_pred EEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEeecCC
Q 019144 26 GLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGV 105 (345)
Q Consensus 26 gvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~pG~ 105 (345)
|||+|+|+++++++|+ +|+++.+.+.+.+ .+++++++.+.+.+++++.+.+.. +|||++||+
T Consensus 1 gidig~~~i~~~l~d~---------~g~ii~~~~~~~~----~~~~~~~~~l~~~i~~~~~~~~~~-----gIgi~~pG~ 62 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDL---------DGEIIYSESIPTP----TSPEELLDALAELIERLLADYGRS-----GIGISVPGI 62 (179)
T ss_dssp EEEEESSEEEEEEEET---------TSCEEEEEEEEHH----SSHHHHHHHHHHHHHHHHHHHTCE-----EEEEEESSE
T ss_pred CEEECCCEEEEEEECC---------CCCEEEEEEEECC----CCHHHHHHHHHHHHHHHHhhcccc-----cEEEecccc
Confidence 7999999999999999 8999999887654 478999999999999999987643 999999999
Q ss_pred CChhH----------H--HHHHHHHHhhCCCCceEEEeCcHHHHHhccc-----CCCCCeEEEEeCccceeeeecCCCCe
Q 019144 106 NHPTD----------Q--QRILNWLRDIFPGNVRLYVHNDALAALASGT-----MGKLHGCVLIAGTGTIAYGFTEDGRD 168 (345)
Q Consensus 106 ~~~~~----------~--~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~~-----~g~~~~v~v~~GTG~~g~gi~~dG~~ 168 (345)
++++. | .+|.+.|+++|+ .||.++||++++++++. ...++++++.+|+|+ |++++.||++
T Consensus 63 v~~~~g~i~~~~~~~~~~~~l~~~l~~~~~--~pv~i~Nd~~~~a~ae~~~~~~~~~~~~~~l~ig~Gi-G~~ii~~g~i 139 (179)
T PF00480_consen 63 VDSEKGRIISSPNPGWENIPLKEELEERFG--VPVIIENDANAAALAEYWFGAAKDCDNFLYLYIGTGI-GAGIIINGKI 139 (179)
T ss_dssp EETTTTEEEECSSGTGTTCEHHHHHHHHHT--SEEEEEEHHHHHHHHHHHHSTTTTTSSEEEEEESSSE-EEEEEETTEE
T ss_pred CcCCCCeEEecCCCCcccCCHHHHhhcccc--eEEEEecCCCcceeehhhcCccCCcceEEEEEeecCC-Ccceeccccc
Confidence 76543 1 478999999998 89999999999988764 235689999999997 8889999999
Q ss_pred EEeccCCCCcCCcCcHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcC
Q 019144 169 ARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLE 217 (345)
Q Consensus 169 ~~~Gg~G~~~gd~G~a~~iG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 217 (345)
++ |..+.++++||+.+. .++..|.|+.++|++.+.+
T Consensus 140 ~~--------G~~~~aGeigh~~~~-----~~~~~c~cG~~GClE~~~S 175 (179)
T PF00480_consen 140 YR--------GSNGFAGEIGHMPVD-----PNGEPCYCGNRGCLETYAS 175 (179)
T ss_dssp ET--------TTTS-TTGGGGSBSS-----TTSSB-TTSSBSBHHHHHS
T ss_pred cc--------CCCccccceeeeecc-----CCCCcCCCCCcCcHHHhhC
Confidence 96 444555555555432 2344455655666666653
No 16
>PTZ00288 glucokinase 1; Provisional
Probab=99.80 E-value=2.2e-18 Score=168.80 Aligned_cols=300 Identities=14% Similarity=0.037 Sum_probs=172.4
Q ss_pred cEEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEe
Q 019144 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (345)
Q Consensus 22 ~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig 101 (345)
.|++++|+|+|++|+++++.. +.+.+.+..... ..+ ....+..+.++.+.+.++.+.+... .-..+...+++
T Consensus 26 ~~~~~~DiGgt~~R~~~~~~~-----~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~iA 97 (405)
T PTZ00288 26 PIFVGCDVGGTNARVGFAREV-----QHDDSGVHIIYV-RFN-VTKTDIRELLEFFDEVLQKLKKNLS-FIQRVAAGAIS 97 (405)
T ss_pred CeEEEEEecCCceEEEEEecc-----CCCCCceeEEEE-ecc-cccccHHHHHHHHHHHHHHHHhcCc-cccCcCeEEEE
Confidence 489999999999999999871 011122222222 121 0113455667777777766655432 11456677999
Q ss_pred ecCCCChhHH-------H---HHHHHHHhhCCCCceEEEeCcHHHHHhccc-----------------------------
Q 019144 102 VSGVNHPTDQ-------Q---RILNWLRDIFPGNVRLYVHNDALAALASGT----------------------------- 142 (345)
Q Consensus 102 ~pG~~~~~~~-------~---~l~~~L~~~~~~~~pV~v~NDa~~a~~~~~----------------------------- 142 (345)
+||++..+.. . .+.+.=-..|+. .++.+-||-.+.+++-.
T Consensus 98 vAGPV~~~~~~~~~~~~~~~~~lTNlpw~i~~~-~~~~liNDfeA~aygi~~l~~~~~~~~~f~~~~~~~~~~~l~~~~~ 176 (405)
T PTZ00288 98 VPGPVTGGQLAGPFNNLKGIARLTDYPVELFPP-GRSALLNDLEAGAYGVLAVSNAGRLSEYFKVMWKGTQWDALSEGKP 176 (405)
T ss_pred EeCceeCCEeeccccccccccccCCCCchhcCC-CeEEEEEhHHHHhCcccccChhhcccccccccccccceeeecCCCC
Confidence 9999743221 0 111100011663 57999999998877520
Q ss_pred ----CCCCCeEEEEeCccceeeeecCCCCe-----EEeccCCCCcC--CcCcHHHHHHHHHHHHHHHhcCCCCCChhHHH
Q 019144 143 ----MGKLHGCVLIAGTGTIAYGFTEDGRD-----ARAAGAGPILG--DWGSGYGIAAQALTAVIRAYDGRGPDTMLTSN 211 (345)
Q Consensus 143 ----~g~~~~v~v~~GTG~~g~gi~~dG~~-----~~~Gg~G~~~g--d~G~a~~iG~~~~~~~~~~~~g~~~~~~~~~~ 211 (345)
.+..+.+++.+|||+ |.+++.++++ ..+||.||+.- ..+..++|+...+...........+.+..+-+
T Consensus 177 ~g~~~~~~~~~Vlg~GTGL-G~alli~~~l~~G~~~~agEgGHv~~~~~~~~~~~~g~~l~~~l~~~~~~~g~~~~~~vs 255 (405)
T PTZ00288 177 AGSVIGRGRCMVLAPGTGL-GSSLIHYVGVSDQYIVIPLECGHLSISWPANEDSDYVQALAGYLASKALSKGIDSTVYPI 255 (405)
T ss_pred CcccCCCCCEEEEEeccce-eEEEEECCeecCCcccccccccceeeccCCCCccchhHHHHHHHHhhhccccccccCcee
Confidence 012345899999998 5566667664 45899999866 34455677766444332222100000000001
Q ss_pred HHHHcCCCChhhHHHHh---hcCCChHHHhcchHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 019144 212 ILSTLELSSPDELIGWT---YVDPSWARIAALVPVVVSCAE-AGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHS 287 (345)
Q Consensus 212 ~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~v~~~a~-~gD~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p 287 (345)
++..+ +...|.... ...............++++|. .+|+.|.+++++++++||..+.+++..+||
T Consensus 256 ~E~v~---SG~GL~~ly~~l~~~~~~~~~~~~~a~ia~~A~~~gD~~A~~al~~f~~~LG~~~~nlal~l~P-------- 324 (405)
T PTZ00288 256 YEDIV---SGRGLEFNYAYEKRGNKPSAPLKEAAEVAKLAKYGSDVAAVKAMKRHYKYLMRLAAEISMQFLP-------- 324 (405)
T ss_pred EeEEe---cHHHHHHHHHHHhccCCCccCcCCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--------
Confidence 22222 233333221 110000000112356777776 589999999999999999999999999994
Q ss_pred ccEEEEcCcccCcccccchH-----HHHHHHH-------hhCCC--cee-eCCCCChHHHHHHHHHHhhhc
Q 019144 288 FPLVMVGGVLEANRRWDIGR-----EVVKCIL-------RDYPG--AVP-IRPKVEPAVGAALLAWNSFMN 343 (345)
Q Consensus 288 ~~IVlgGgl~~~~~~~~l~~-----~~~~~l~-------~~~~~--~~i-~~~~~a~~~GAa~la~~~~~~ 343 (345)
+.|||+||+.....++ +.+ .++.... +.... +.+ +...+.+++||+.++.+.+.+
T Consensus 325 ~~VvIgGGi~~~~~~~-l~~~~~~~f~~~f~~~~k~~r~~~l~~ipv~~qv~~~~~gL~Gaa~~a~~~~~~ 394 (405)
T PTZ00288 325 LTVVLMGDNIVYNSFF-FDNPENVKQLQARITEHKMERLKFLSRTTFLRQKKSVNLNLLGCLQFGSQLSHL 394 (405)
T ss_pred CEEEEECccHHhhHHH-HhccchHHHHHHHHhcCccChHHHHhcCceEEEEeCCCccHHHHHHHHHHhhcc
Confidence 8899999877654444 221 2222222 11112 333 456788999999999876644
No 17
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=99.76 E-value=1.4e-16 Score=153.92 Aligned_cols=257 Identities=19% Similarity=0.155 Sum_probs=165.5
Q ss_pred EEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHH---HHHHHHHHHcCCCccccceeE
Q 019144 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIE---KVMADALLKSGSNRSAVRAVC 99 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~---~~i~~~~~~~~~~~~~i~~Ig 99 (345)
++|.|..|+|+||+++++. ++.++.+....+.+.. .+.+.+++++. +.|.+++++.++..++|.+|
T Consensus 1 ~il~in~Gsts~k~alf~~---------~~~~~~~~~~~~~~~~-~~~~~~~~q~~~r~~~i~~~l~~~~~~~~~i~av- 69 (351)
T TIGR02707 1 KILVINPGSTSTKLAVFED---------ERPLFEETLRHSVEEL-GRFKNVIDQFEFRKQVILQFLEEHGISISKLDAV- 69 (351)
T ss_pred CEEEEecCchhheEEEEeC---------CCceeeeeecCCHHHh-cccccHHHHHHHHHHHHHHHHHHcCCCcccccEE-
Confidence 3789999999999999998 7887777665442221 34556788888 88999999888777778888
Q ss_pred EeecCCCChhH--------------------------HHHHHHHHHhhCCCCceEEEeCc---------HHHHHhccc--
Q 019144 100 LAVSGVNHPTD--------------------------QQRILNWLRDIFPGNVRLYVHND---------ALAALASGT-- 142 (345)
Q Consensus 100 ig~pG~~~~~~--------------------------~~~l~~~L~~~~~~~~pV~v~ND---------a~~a~~~~~-- 142 (345)
.+-+|++.+-. ...+...+.+.++ .|.++.|+ +++.++.++
T Consensus 70 ~~RgG~~~~v~Gg~~~v~~~~~~~l~~~~~~~~~hn~~~~~~~~~~~~~~--~p~~vfDt~fh~~~~~~a~~~alpe~~R 147 (351)
T TIGR02707 70 VGRGGLLKPIPGGTYLVNEAMLEDLKSGKRGEHASNLGAIIANELADELN--IPAYIVDPVVVDEMEDVARISGLPEIER 147 (351)
T ss_pred EECCCCCceecceeEEECHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHcC--CCEEEcCChhhhcChHHHHHhccchhhh
Confidence 77777654221 0123444545565 78889999 665443211
Q ss_pred ---------------------CC--CCCeEEEEeCccceeeeecCCCCeEE-----eccCCCCcCCcCcHHHHHHHHHHH
Q 019144 143 ---------------------MG--KLHGCVLIAGTGTIAYGFTEDGRDAR-----AAGAGPILGDWGSGYGIAAQALTA 194 (345)
Q Consensus 143 ---------------------~g--~~~~v~v~~GTG~~g~gi~~dG~~~~-----~Gg~G~~~gd~G~a~~iG~~~~~~ 194 (345)
.+ ..+.+++.+|||+ +.+++.||+++. +|+.+|+.-. +|+.....
T Consensus 148 rygfHgls~~~v~~~~~~~~g~~~~~~~~I~~hLGtGi-g~~ai~~Gk~vdgs~G~agEg~~~~tr------~G~id~~~ 220 (351)
T TIGR02707 148 KSIFHALNQKAVARRIAKELGKRYEEMNLIVAHMGGGI-SVAAHRKGRVIDVNNALDGEGPFSPER------SGTLPLGD 220 (351)
T ss_pred hhchhhhhHHHHHHHHHHHcCCCcccCCEEEEEeCCCc-eeeeEECCEEEEcCCCCCCcCCcccCc------cCCCCchh
Confidence 12 2378999999998 567889999985 3333332211 22210000
Q ss_pred -HHHHhcCCCCCChhHHHHHHHcCCCChhhHHHHhhcCC---ChHHHhcchHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 019144 195 -VIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDP---SWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSV 270 (345)
Q Consensus 195 -~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~v~~~a~~gD~~a~~il~~~~~~Lg~~l 270 (345)
...+.++.. +..++.+.+.... .... ....++|++++++||+.|+.++++++++|++.|
T Consensus 221 ~~~~~~~~~~----------------s~~el~~~l~~~sGl~~~~g-s~d~reI~~~a~~GD~~A~~a~d~~~~~la~~I 283 (351)
T TIGR02707 221 LVDLCYSGKY----------------TKEEMKKKIVGNGGLVAYLG-TNDAREVEKRIEAGDEKAKLILDAMAYQIAKEI 283 (351)
T ss_pred HHHHHhcCCC----------------CHHHHHHHHHhccCcccccC-CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 001111111 1122222222111 0000 123578899999999999999999999999999
Q ss_pred HHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCC
Q 019144 271 KAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPK 326 (345)
Q Consensus 271 ~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~i~~~~ 326 (345)
+++++.|++ +|+.||++||+... +.+ ++.+++.+... .++.+.+.+
T Consensus 284 a~l~~~l~g------~pD~IV~gGGI~e~-~~l--~~~I~~~l~~~-a~v~~~pg~ 329 (351)
T TIGR02707 284 GKMAVVLKG------KVDAIVLTGGLAYS-KYF--VSEIIKRVSFI-APVLVYPGE 329 (351)
T ss_pred HHHHHHhCC------CCCEEEEcchhhcC-HHH--HHHHHHHHHhh-CCEEEeCCc
Confidence 999999931 26999999999864 444 77888887765 346666653
No 18
>PRK03011 butyrate kinase; Provisional
Probab=99.72 E-value=1.2e-15 Score=147.82 Aligned_cols=266 Identities=17% Similarity=0.117 Sum_probs=163.8
Q ss_pred EEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCcc---ccCHHHHHHHHHHHHHHHHHHcCCCccccceeE
Q 019144 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHN---SVGEDAARETIEKVMADALLKSGSNRSAVRAVC 99 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~---~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Ig 99 (345)
.+|.|.-|.|+||+++++- .+.+.......+... ....-+=++.=.+.+.+++++.++...++.+|
T Consensus 3 ~il~inpgststk~a~~~~----------~~~~~~~~~~h~~~~~~~~~~~~~q~~~r~~~i~~~l~~~g~~~~~l~av- 71 (358)
T PRK03011 3 RILVINPGSTSTKIAVFED----------EKPIFEETLRHSAEELEKFKTIIDQYEFRKQAILDFLKEHGIDLSELDAV- 71 (358)
T ss_pred EEEEEcCCCchheEEEEcC----------CceeeeeccccCHHHHhcCCCccchHHHHHHHHHHHHHHcCCChhcceEE-
Confidence 7999999999999999985 344454443211100 00000112223456777788888877788887
Q ss_pred EeecCCCChh--H------------------------HHHHHHHHHhhCCCCceEEEeCc--------------------
Q 019144 100 LAVSGVNHPT--D------------------------QQRILNWLRDIFPGNVRLYVHND-------------------- 133 (345)
Q Consensus 100 ig~pG~~~~~--~------------------------~~~l~~~L~~~~~~~~pV~v~ND-------------------- 133 (345)
++-+|...+- . ...+...+.+.++ +|++|.|+
T Consensus 72 ~~RgG~~~~v~gG~~~v~~~~~~~l~~~~~~~~~~nl~~~~a~~~~~~~~--~p~~v~D~~~~~~~~~~a~~~~lp~i~R 149 (358)
T PRK03011 72 VGRGGLLKPIPGGTYRVNEAMLEDLKNGKYGEHASNLGAIIAYEIAKELG--IPAFIVDPVVVDEMEPVARISGLPEIER 149 (358)
T ss_pred EEcCCCCcccCCCCEEcCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcC--CCEEEECCcccccCCHHHHHcCCCCcce
Confidence 7777765421 0 0124455555665 89999999
Q ss_pred ------HHHHHhccc----C----CCCCeEEEEeCccceeeeecCCCCeEEeccCCCCcCCcCcHHH-------HHHHHH
Q 019144 134 ------ALAALASGT----M----GKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYG-------IAAQAL 192 (345)
Q Consensus 134 ------a~~a~~~~~----~----g~~~~v~v~~GTG~~g~gi~~dG~~~~~Gg~G~~~gd~G~a~~-------iG~~~~ 192 (345)
.|..+.+.. . ...+.+++.+|||+ +.+++.||++++ +..|.++| +||...
T Consensus 150 ~~gfHgln~~~va~~~a~~~g~~~~~~n~I~~hLGtGi-g~gai~~Gk~id--------gs~g~agEG~~~~~R~G~l~~ 220 (358)
T PRK03011 150 KSIFHALNQKAVARRVAKELGKKYEELNLIVAHLGGGI-SVGAHRKGRVID--------VNNALDGEGPFSPERAGGLPV 220 (358)
T ss_pred eecchHHhHHHHHHHHHHHhCCCcccCcEEEEEeCCCc-eeeEEECCEEEe--------cCCccCCCCCcccCcccCcCc
Confidence 554443321 1 23478999999998 667889999986 11111111 334322
Q ss_pred HHH-HHHhcCCCCCChhHHHHHHHcCCCChhhHHHHhhcCCC-hHHH-hcchHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 019144 193 TAV-IRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPS-WARI-AALVPVVVSCAEAGDEVANKILQDSVEELALS 269 (345)
Q Consensus 193 ~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~-~~~~~~v~~~a~~gD~~a~~il~~~~~~Lg~~ 269 (345)
... ..+.++.. +..++.+.+..... .... ....++|++++++||+.|+.++++++++|++.
T Consensus 221 ~~~~~~~~~g~~----------------s~~~l~~~l~~~~Gl~~~~gs~d~reV~~~a~~GD~~A~~ald~~~~~lak~ 284 (358)
T PRK03011 221 GDLVELCFSGKY----------------TKEELKKKLVGKGGLVAYLGTNDAREVEKRIEEGDEKAKLVYEAMAYQIAKE 284 (358)
T ss_pred HHHHHHHhcCCC----------------CHHHHHHHHHhccCcccccCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 110 11122211 12222222221100 0000 12357889999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCC---CChHHHHHHH
Q 019144 270 VKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPK---VEPAVGAALL 336 (345)
Q Consensus 270 l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~i~~~~---~a~~~GAa~l 336 (345)
|+++++.|+ .+|+.||++||+.. .+. +++.+++.+.... ++.+.+++ .+.+.||+.+
T Consensus 285 I~~l~~~L~------gdpD~IVlgGGI~~-~~~--l~~~I~~~l~~~~-pv~i~p~~~e~~A~a~GA~rv 344 (358)
T PRK03011 285 IGAMAAVLK------GKVDAIVLTGGLAY-SKR--LVERIKERVSFIA-PVIVYPGEDEMEALAEGALRV 344 (358)
T ss_pred HHHHHHHhC------CCCCEEEEeCcccc-CHH--HHHHHHHHHHhhC-CeEEEeCCCHHHHHHHHHHHH
Confidence 999999993 12699999999987 444 4888888888653 46776643 4677887654
No 19
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=99.61 E-value=3.7e-14 Score=135.28 Aligned_cols=277 Identities=17% Similarity=0.049 Sum_probs=158.7
Q ss_pred EEEecCccceeeEEEcCccCCCCCCCCCC--eeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEee
Q 019144 25 LGLDGGTTSTVCICMPVISMSDSLPDPLP--VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (345)
Q Consensus 25 lgvDiG~t~~~~~l~d~~~~~~~~~~~g~--i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~ 102 (345)
|..||||||+++++++.. ... ++...+.++.+.. .+.+++++++++......++..+++++
T Consensus 1 Lv~DIGGTn~Rlal~~~~--------~~~~~~~~~~~~~~~~~~---------s~~~~l~~~l~~~~~~~~~p~~~~iav 63 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPD--------GGPLQLIDIRRYPSADFP---------SFEDALADYLAELDAGGPEPDSACIAV 63 (316)
T ss_dssp EEEEEETTEEEEEEEECT--------CGG-EEEEEEEEEGCCCC---------HHHHHHHHHHHHTCHHHTCEEEEEEEE
T ss_pred CeEEeCcccEEEEEEEcC--------CCCccccccEEEecCCcC---------CHHHHHHHHHHhcccCCCccceEEEEE
Confidence 578999999999999982 233 3555555554432 344455566664332333566799999
Q ss_pred cCCCChhH-------HHHHHHHHHhhCCCCceEEEeCcHHHHHhcc-----------c----CCCCCeEEEEeCccceee
Q 019144 103 SGVNHPTD-------QQRILNWLRDIFPGNVRLYVHNDALAALASG-----------T----MGKLHGCVLIAGTGTIAY 160 (345)
Q Consensus 103 pG~~~~~~-------~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~-----------~----~g~~~~v~v~~GTG~~g~ 160 (345)
+|+++.+. |.--.+.|++.|+. .+|.+-||-.+.+++- . ......+++-.|||.+.+
T Consensus 64 AGPV~~~~~~lTN~~W~i~~~~l~~~lg~-~~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~~~~~~~Vig~GTGLG~a 142 (316)
T PF02685_consen 64 AGPVRDGKVRLTNLPWTIDADELAQRLGI-PRVRLINDFEAQAYGLPALDPEDLVTLQPGEPDPGGPRAVIGPGTGLGVA 142 (316)
T ss_dssp SS-EETTCEE-SSSCCEEEHHHCHCCCT--TCEEEEEHHHHHHHHHHHHHHCCECCHCCEESSTTS-EEEEEESSSEEEE
T ss_pred ecCccCCEEEecCCCccccHHHHHHHhCC-ceEEEEcccchheeccCCCCHHHeeeccCCCCCCCCcEEEEEcCCCcEEE
Confidence 99965332 22125677788873 4799999999876641 0 112345788899999777
Q ss_pred eecCCCCe--EEeccCCCCcCCcCcHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCCCChhhHH---HHhhcCCChH
Q 019144 161 GFTEDGRD--ARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELI---GWTYVDPSWA 235 (345)
Q Consensus 161 gi~~dG~~--~~~Gg~G~~~gd~G~a~~iG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~ 235 (345)
.++.++.- ....|.||+--.+-...+.- .+ ..+...-++.+ . +..+ +.+.|. +++.......
T Consensus 143 ~l~~~~~~~~v~~sEgGH~~fap~~~~e~~--l~-~~l~~~~~~vs----~---E~vl---SG~GL~~ly~~l~~~~~~~ 209 (316)
T PF02685_consen 143 LLVPDGDGYYVLPSEGGHVDFAPRTDEEAE--LL-RFLRRRYGRVS----V---ERVL---SGRGLENLYRFLAGERGAE 209 (316)
T ss_dssp EEEEETTEEEEEEE-GGGSB---SSHHHHH--HH-HHHHHHCTS-B----H---HHCS---SHHHHHHHHHHHHCCTT--
T ss_pred EEEecCCceEeCCCccccccCCCCCHHHHH--HH-HHHHHhcCCce----e---Eeec---chhhHHHHHHHHHhccCCC
Confidence 77665543 34788888654444333321 11 11111222211 1 1111 222232 2222211000
Q ss_pred HHhcchHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchH-HHHHHH
Q 019144 236 RIAALVPVVVSCAE-AGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGR-EVVKCI 313 (345)
Q Consensus 236 ~~~~~~~~v~~~a~-~gD~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~-~~~~~l 313 (345)
.-....+.|.++|. .+||.|++.++.+..+||..+.+++-.+.+ -.-|+|+||+......+ +.+ .|++.+
T Consensus 210 ~~~~~~~~I~~~A~~~~d~~a~~al~~f~~~lg~~agdlaL~~~a-------~gGvyiaGGI~~~~~~~-l~~~~F~~~F 281 (316)
T PF02685_consen 210 PPLLSAAEISAAALEGGDPLAREALDLFARILGRVAGDLALTFLA-------RGGVYIAGGIAPRLLPL-LDESAFREAF 281 (316)
T ss_dssp S----HHHHHHHHHCT--HHHHHHHHHHHHHHHHHHHHHHHHHT--------TCEEEEE-TTGGGGHHH-HHCSSHHHHH
T ss_pred CCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CeeEEEecchhhHHHHH-cChhHHHHHH
Confidence 00123567888885 568999999999999999999999999986 34699999999876655 221 366666
Q ss_pred HhhC--------CCceeeCCCCChHHHHHHHHHHh
Q 019144 314 LRDY--------PGAVPIRPKVEPAVGAALLAWNS 340 (345)
Q Consensus 314 ~~~~--------~~~~i~~~~~a~~~GAa~la~~~ 340 (345)
..+. -++.++..++.+++||+.++.++
T Consensus 282 ~~kg~~~~~l~~iPv~li~~~~~gL~Gaa~~a~~~ 316 (316)
T PF02685_consen 282 EDKGRMSDLLEDIPVYLITDPDAGLLGAAAYARQH 316 (316)
T ss_dssp H--GGGHHHHTT--EEEE--S-HHHHHHHHHHHH-
T ss_pred hccCCcHHHHhcCcEEEEeCCCHHHHHHHHHHhcC
Confidence 4431 13566777889999999988763
No 20
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=1.2e-10 Score=107.76 Aligned_cols=280 Identities=18% Similarity=0.076 Sum_probs=166.6
Q ss_pred CccEEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeE
Q 019144 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC 99 (345)
Q Consensus 20 ~~~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Ig 99 (345)
|....+.-|||||+.+++++... ..+........+.+. ..+.+++++++.+.. ...+...+
T Consensus 4 ~~~p~LvgDIGGTnaRfaLv~~a--------~~~~~~~~~~~~~dy---------psle~av~~yl~~~~--~~~~~~a~ 64 (320)
T COG0837 4 MGYPRLVGDIGGTNARFALVEIA--------PAEPLQAETYACADY---------PSLEEAVQDYLSEHT--AVAPRSAC 64 (320)
T ss_pred CCCceEEEecCCcceEEEEeccC--------CCCccccceecccCc---------CCHHHHHHHHHHHhh--ccCccceE
Confidence 44456666999999999997762 233333333333322 233445556665552 12445678
Q ss_pred EeecCCCChhH-------HHHHHHHHHhhCCCCceEEEeCcHHHHHhcc-------------cCC--CCCeEEEEeCccc
Q 019144 100 LAVSGVNHPTD-------QQRILNWLRDIFPGNVRLYVHNDALAALASG-------------TMG--KLHGCVLIAGTGT 157 (345)
Q Consensus 100 ig~pG~~~~~~-------~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~-------------~~g--~~~~v~v~~GTG~ 157 (345)
++++|++..++ |.-=.+.+++.+++ ..+.+-||-.+.+++. .+. ...-+++-.|||.
T Consensus 65 ~AiAgPv~gd~v~lTN~~W~~s~~~~r~~Lgl-~~v~liNDF~A~A~Ai~~l~~~dl~qigg~~~~~~a~~avlGPGTGL 143 (320)
T COG0837 65 FAIAGPIDGDEVRLTNHDWVFSIARMRAELGL-DHLSLINDFAAQALAIPRLGAEDLEQIGGGKPEPNAPRAVLGPGTGL 143 (320)
T ss_pred EEEecCccCCEEeeecCcccccHHHHHHhcCC-CcEEEechHHHHHhhccccCHHHHHHhcCCCCCCCCceEEEcCCCCc
Confidence 99999975442 32224566667774 5799999999776641 111 2234677789999
Q ss_pred eeeeecCCCCeEE--eccCCCCcCCcCcHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCCCChhhHHHHhhc-C-CC
Q 019144 158 IAYGFTEDGRDAR--AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYV-D-PS 233 (345)
Q Consensus 158 ~g~gi~~dG~~~~--~Gg~G~~~gd~G~a~~iG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~-~~ 233 (345)
+.++++.++.-+. .||=||+--.+.+.-|+ .+.+.+....|+.+. +..++-.....|-+.+.. + ..
T Consensus 144 GVa~Lv~~~~~w~~lp~EGGHvdf~P~~~~E~---~i~~~l~~~~GrVS~-------Er~LSG~GL~~iY~al~~~~~~~ 213 (320)
T COG0837 144 GVAGLVPNGGGWIPLPGEGGHVDFAPRSEREF---QILEYLRARFGRVSA-------ERVLSGPGLVNLYRALCAADGRL 213 (320)
T ss_pred ceEEEEecCCeeEeccCCCccccCCCCCHHHH---HHHHHHHHhcCccch-------hhhcccccHHHHHHHHHHhhCCC
Confidence 8888877655443 77788853334444333 223333333444321 111110011111111110 0 00
Q ss_pred hHHHhcchHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchH-HHHH
Q 019144 234 WARIAALVPVVVSCAEA-GDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGR-EVVK 311 (345)
Q Consensus 234 ~~~~~~~~~~v~~~a~~-gD~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~-~~~~ 311 (345)
... ..-++|-+++.+ +|+.|.+.++-++.+||....|++-.|.+ -.-|+|.||+....-++ |.. .|++
T Consensus 214 ~~~--~~p~~It~~al~g~d~~a~~tl~lF~~~lG~~AGdlAL~lga-------rGGVyiaGGI~pril~~-l~~s~Fr~ 283 (320)
T COG0837 214 PED--LTPAAITERALAGGDALARETLSLFCAILGRVAGDLALTLGA-------RGGVYIAGGIVPRILEA-LKASGFRA 283 (320)
T ss_pred ccc--CCHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhHHhHHHHhhc-------cCcEEEcCCchHhHHHH-HhcchHHH
Confidence 111 112467777777 79999999999999999999999999996 35799999999764433 222 4677
Q ss_pred HHHhhCC--------CceeeCCCCChHHHHHHHHHH
Q 019144 312 CILRDYP--------GAVPIRPKVEPAVGAALLAWN 339 (345)
Q Consensus 312 ~l~~~~~--------~~~i~~~~~a~~~GAa~la~~ 339 (345)
.+..+.+ ++.++.....+++||+..+.+
T Consensus 284 ~FedKGr~sa~l~~IPV~vi~~~~~gL~Gaa~~~~~ 319 (320)
T COG0837 284 RFEDKGRMSAYLADIPVYVILHPQPGLLGAAAALRQ 319 (320)
T ss_pred HhhhcCchHHHHhhCCEEEEecCCchHHHHHHHhcC
Confidence 7655421 355666788999999977643
No 21
>PLN02914 hexokinase
Probab=99.29 E-value=6.6e-09 Score=104.13 Aligned_cols=299 Identities=15% Similarity=0.115 Sum_probs=162.3
Q ss_pred ccEEEEEecCccceeeEEEcCccCCCCCCCCCCeeE---EEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCC----cc
Q 019144 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLA---RAAAGCSNHNSVGEDAARETIEKVMADALLKSGSN----RS 93 (345)
Q Consensus 21 ~~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~---~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~----~~ 93 (345)
.+.++++|+|||+.|+++++++|. .+++.. +....+........+++++.|.+.|.+++++.... ..
T Consensus 94 ~G~fLAlDlGGTNfRV~~V~L~g~------~~~~~~~~~~~~~ip~~l~~gt~~eLFdfIA~~i~~fl~~~~~~~~~~~~ 167 (490)
T PLN02914 94 KGLFYALDLGGTNFRVLRVQLGGK------DERVIATEFEQVSIPQELMFGTSEELFDFIASGLANFVAKEGGKFHLPEG 167 (490)
T ss_pred eeEEEEEecCCceEEEEEEEecCC------CCceeeeeEEEecCChhhccCCHHHHHHHHHHHHHHHHHhccccccCCcc
Confidence 458999999999999999999431 122222 12112223333467899999999999999976421 11
Q ss_pred cc--ceeEEeecC---------------------CCChhHHHHHHHHHHhh-CCCCceEEEeCcHHHHHhcccC-CCCCe
Q 019144 94 AV--RAVCLAVSG---------------------VNHPTDQQRILNWLRDI-FPGNVRLYVHNDALAALASGTM-GKLHG 148 (345)
Q Consensus 94 ~i--~~Igig~pG---------------------~~~~~~~~~l~~~L~~~-~~~~~pV~v~NDa~~a~~~~~~-g~~~~ 148 (345)
+. .|+.++.|= .+..+-...|.+.|+++ ++. .++.|-||+.+.+++..+ ..+..
T Consensus 168 ~~l~LGfTFSFP~~Q~si~~g~Li~WTKGF~~~gv~G~DVv~lL~~Al~r~~l~v-~v~AivNDTVGTL~a~aY~~~~~~ 246 (490)
T PLN02914 168 RKREIGFTFSFPVKQTSIDSGILMKWTKGFAVSGTAGKDVVACLNEAMERQGLDM-RVSALVNDTVGTLAGARYWDDDVM 246 (490)
T ss_pred ccccceeeEeeeeecCCCCceEEEEeccccccCCccCchHHHHHHHHHHHcCCCc-eEEEEEEcCHHHHHhhhcCCCCce
Confidence 12 333333332 22111123455555544 232 468889999988877543 33457
Q ss_pred EEEEeCccceeeeecCCC-------------CeEEeccCCCCcCCcCcHHHHHHHHHHHHHHHhcCCC--CCCh------
Q 019144 149 CVLIAGTGTIAYGFTEDG-------------RDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRG--PDTM------ 207 (345)
Q Consensus 149 v~v~~GTG~~g~gi~~dG-------------~~~~~Gg~G~~~gd~G~a~~iG~~~~~~~~~~~~g~~--~~~~------ 207 (345)
+.+|.|||..++-+..-. +..-.=|||.. ++.-. ....+.. .|... +...
T Consensus 247 iGlIlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F-~~~lp-----~T~~D~~---lD~~S~nPG~Q~fEKmi 317 (490)
T PLN02914 247 VAVILGTGTNACYVERTDAIPKLQGQKSSSGRTIINTEWGAF-SDGLP-----LTEFDRE---MDAASINPGEQIFEKTI 317 (490)
T ss_pred EEEEEECCeeeEEEeecccccccccCCCCCceEEEecccccc-CCCCC-----CChHHHH---HhhCCCCCCcchhhhHH
Confidence 889999999887553212 22222345543 21110 0011111 11111 1000
Q ss_pred -------hHHH-HHHH------cCCCChhhH----------HHHhhcCCChHHHhcchHHHHHHH-Hc----CC-----H
Q 019144 208 -------LTSN-ILST------LELSSPDEL----------IGWTYVDPSWARIAALVPVVVSCA-EA----GD-----E 253 (345)
Q Consensus 208 -------~~~~-~~~~------~~~~~~~~l----------~~~~~~~~~~~~~~~~~~~v~~~a-~~----gD-----~ 253 (345)
+.+. ++.. |+-..+..| +..+..+.+ .++. .+..+++.. .- .| .
T Consensus 318 SG~YLGEivRlvLl~l~~~~~lF~~~~~~~L~~~~~l~T~~ls~i~~D~s-~~l~-~~~~~l~~~~~~~~~~~d~~~vr~ 395 (490)
T PLN02914 318 SGMYLGEIVRRVLLKMAETSDLFGHFVPEKLSTPFALRTPHLCAMQQDNS-DDLQ-AVGSILYDVLGVEASLSARRRVVE 395 (490)
T ss_pred hhhhHHHHHHHHHHHHHHhcccccCCCcHhhcCCCccccHHHHHHhcCCC-hhHH-HHHHHHHHhcCCCCCHHHHHHHHH
Confidence 1111 1110 000000000 000010000 0110 111222110 00 11 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCC-CC-CCCCccEEEEcCcccCcccccchHHHHHHHHhhC-C----CceeeCCC
Q 019144 254 VANKILQDSVEELALSVKAVVQRLSLSG-ED-GKHSFPLVMVGGVLEANRRWDIGREVVKCILRDY-P----GAVPIRPK 326 (345)
Q Consensus 254 ~a~~il~~~~~~Lg~~l~~lv~~ld~~~-~~-~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~-~----~~~i~~~~ 326 (345)
.|..|.+++++..|-+|+.+++..+... .. ...+-.|-+.|++++.++.| .+.+++.+.+.. + .+++..++
T Consensus 396 i~~~V~~RAArL~Aa~iaail~k~~~~~~~~~~~~~~~VavDGSv~~~~p~f--~~~l~~~l~ellg~~~~~~i~i~~a~ 473 (490)
T PLN02914 396 VCDTIVKRGGRLAGAGIVGILEKMEEDSKGMIFGKRTVVAMDGGLYEKYPQY--RRYMQDAVTELLGLELSKNIAIEHTK 473 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCceEEEEEeCchhhcCccH--HHHHHHHHHHHhCcccCCcEEEEEcc
Confidence 7778899999999999999999876310 00 11235899999999999887 888888888774 2 35666788
Q ss_pred CChHHHHHHHHHH
Q 019144 327 VEPAVGAALLAWN 339 (345)
Q Consensus 327 ~a~~~GAa~la~~ 339 (345)
+..-+|||++|.-
T Consensus 474 DGSGvGAAl~AA~ 486 (490)
T PLN02914 474 DGSGIGAALLAAT 486 (490)
T ss_pred CchHHHHHHHHHH
Confidence 9999999999863
No 22
>PTZ00107 hexokinase; Provisional
Probab=99.27 E-value=8.5e-09 Score=103.06 Aligned_cols=295 Identities=15% Similarity=0.136 Sum_probs=162.0
Q ss_pred ccEEEEEecCccceeeEEEcCccCCCCCCCCCCe-eEEEec-CCCCccc---------cCHHHHHHHHHHHHHHHHHHcC
Q 019144 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPV-LARAAA-GCSNHNS---------VGEDAARETIEKVMADALLKSG 89 (345)
Q Consensus 21 ~~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i-~~~~~~-~~~~~~~---------~~~~~~~~~l~~~i~~~~~~~~ 89 (345)
.+.++++|+|||+.|++++.+.| ++.+ ..+... .+..... ...+++++.|.+.|.+++++..
T Consensus 73 ~G~fLAlDlGGTN~RV~~V~L~g-------~~~~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl~~~~ 145 (464)
T PTZ00107 73 KGVYYAIDFGGTNFRAVRVSLRG-------GGKMERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIKKMMEENG 145 (464)
T ss_pred cceEEEEecCCceEEEEEEEeCC-------CCceeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 45899999999999999999942 1121 111111 1111111 1578999999999999999875
Q ss_pred C--Cc-cc-cceeEEeec--------------------------CCCChhHHHHHHHHHHhh-CCCCceEEEeCcHHHHH
Q 019144 90 S--NR-SA-VRAVCLAVS--------------------------GVNHPTDQQRILNWLRDI-FPGNVRLYVHNDALAAL 138 (345)
Q Consensus 90 ~--~~-~~-i~~Igig~p--------------------------G~~~~~~~~~l~~~L~~~-~~~~~pV~v~NDa~~a~ 138 (345)
. +. .. -.|+.++.| |.+..+-...|.+.|+++ ++. .++.|-||+.+.+
T Consensus 146 ~~~~~~~~l~lGfTFSFP~~Q~si~~g~Li~WtKGF~~~~~~~~~v~G~DV~~lL~~Al~r~~l~v-~v~AivNDTVgTL 224 (464)
T PTZ00107 146 DPEDLNKPVPVGFTFSFPCTQLSVNNAILIDWTKGFETGRATNDPVEGKDVGELLNDAFKRNNVPA-NVVAVLNDTVGTL 224 (464)
T ss_pred ccccccccccceeEEeeeeecccCCceEEEEeccceeeccCCCCCccCchHHHHHHHHHHHcCCCc-eEEEEEEcCHHHH
Confidence 1 11 11 134433333 333222223344444443 222 4799999999888
Q ss_pred hccc-CC----CCCeEEEEeCccceeeeecCC------CCeEEeccCCCCcCCcCcHHHHHHHHHHHHHHHhcCCCCCC-
Q 019144 139 ASGT-MG----KLHGCVLIAGTGTIAYGFTED------GRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDT- 206 (345)
Q Consensus 139 ~~~~-~g----~~~~v~v~~GTG~~g~gi~~d------G~~~~~Gg~G~~~gd~G~a~~iG~~~~~~~~~~~~g~~~~~- 206 (345)
++.. .. .+..+.+|.|||..++-+... ....-.=|||.. +.. +=....+.. .|......
T Consensus 225 ~a~ay~~~~~~~~~~iGlIlGTG~NacY~E~~~~~~~~~~~iINtEwG~F-~~~-----lp~T~~D~~---lD~~S~npg 295 (464)
T PTZ00107 225 ISCAYQKPKNTPPCQVGVIIGTGSNACYFEPEVSAYGYAGTPINMECGNF-DSK-----LPITPYDLE---MDWYTPNRG 295 (464)
T ss_pred HHHHhcCcCCCCCceEEEEEeccccceeeehhhccCCCCcEEEEeecccc-CCC-----CCCChHHHH---HhhcCCCCC
Confidence 7654 32 335788999999988765421 112222355543 211 001111211 11111110
Q ss_pred --------------hhHHH-HHHHcCCCChhhHH----------HHhhcCCChHHHhcchHHHHHHH-----HcCC----
Q 019144 207 --------------MLTSN-ILSTLELSSPDELI----------GWTYVDPSWARIAALVPVVVSCA-----EAGD---- 252 (345)
Q Consensus 207 --------------~~~~~-~~~~~~~~~~~~l~----------~~~~~~~~~~~~~~~~~~v~~~a-----~~gD---- 252 (345)
.+.+. +..++....++.|. ..+..+.+ ..+. .+..++... ...|
T Consensus 296 ~Q~fEKmiSG~YLGEi~Rlvl~~l~~~~~~~~l~~~~~~~t~~ls~i~~d~s-~~l~-~~~~~l~~~~~~~~~~~d~~~l 373 (464)
T PTZ00107 296 RQQFEKMISGAYLGEISRRLIVHLLQLKAPPKMWQSGSFESEDASMILNDQS-PDLQ-FSRQVIKEAWDVDLTDEDLYTI 373 (464)
T ss_pred cCchhhHHhhhhHHHHHHHHHHHHHhcCCchhhcCCcccccHHHHhhhcCCC-chHH-HHHHHHHHhcCCCCCHHHHHHH
Confidence 01111 11222110011000 00000000 0010 111122110 0011
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhC-C---CceeeCCCC
Q 019144 253 -EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDY-P---GAVPIRPKV 327 (345)
Q Consensus 253 -~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~-~---~~~i~~~~~ 327 (345)
..|..|.+++++..|-+|+.++...+. ...+-.|-+.|++++.++.| .+.+++.+++.. + .+.+..+++
T Consensus 374 r~i~~~V~~RAA~L~Aa~iaail~k~~~----~~~~~~VgvDGSv~~~~p~f--~~~~~~~l~~ll~~~~~~v~l~~a~D 447 (464)
T PTZ00107 374 RKICELVRGRAAQLAAAFIAAPAKKTRT----VQGKATVAIDGSVYVKNPWF--RRLLQEYINSILGPDAGNVVFYLADD 447 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCCceEEEEeCcceecCccH--HHHHHHHHHHHhCCCCCcEEEEEccC
Confidence 567789999999999999999998872 11345899999999999887 888999998774 3 356667889
Q ss_pred ChHHHHHHHHHHh
Q 019144 328 EPAVGAALLAWNS 340 (345)
Q Consensus 328 a~~~GAa~la~~~ 340 (345)
...+|||++|.-.
T Consensus 448 GSg~GAAl~AA~~ 460 (464)
T PTZ00107 448 GSGKGAAIIAAMV 460 (464)
T ss_pred chHHHHHHHHHHh
Confidence 9999999988654
No 23
>PLN02405 hexokinase
Probab=99.25 E-value=4.9e-09 Score=105.34 Aligned_cols=302 Identities=18% Similarity=0.131 Sum_probs=162.5
Q ss_pred ccEEEEEecCccceeeEEEcCccCCCCCCCCCCeeEE---EecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCc----c
Q 019144 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLAR---AAAGCSNHNSVGEDAARETIEKVMADALLKSGSNR----S 93 (345)
Q Consensus 21 ~~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~---~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~----~ 93 (345)
.+.++++|+|||+.|++++.+.|. .+..+.. ....+.+....+.+++++.|.+.|.+++++.+... .
T Consensus 94 ~G~flAlDlGGTNfRV~~V~L~g~------~~~~~~~~~~~~~ip~~~~~gt~~~LFdfIA~~i~~fl~~~~~~~~~~~~ 167 (497)
T PLN02405 94 KGLFYALDLGGTNFRVLRVLLGGK------DGRVVKQEFEEVSIPPHLMTGSSDALFDFIAAALAKFVATEGEDFHLPPG 167 (497)
T ss_pred ceeEEEEecCCceEEEEEEEEcCC------CCceeEEEEEEeecChhhccCCHHHHHHHHHHHHHHHHHhcccccccCcc
Confidence 458999999999999999999431 1222221 22223333345678999999999999998875321 1
Q ss_pred c--cceeEEeecCCC-ChhH----------------HHHHHHHHHhhC---CC-CceEEEeCcHHHHHhcccC-CCCCeE
Q 019144 94 A--VRAVCLAVSGVN-HPTD----------------QQRILNWLRDIF---PG-NVRLYVHNDALAALASGTM-GKLHGC 149 (345)
Q Consensus 94 ~--i~~Igig~pG~~-~~~~----------------~~~l~~~L~~~~---~~-~~pV~v~NDa~~a~~~~~~-g~~~~v 149 (345)
+ -.|+.++.|=-- +-+. +.++.+.|++.+ +. -.++.|-||+.+.+++..+ ..+..+
T Consensus 168 ~~l~LGfTFSFPv~Qtsi~~g~Li~WTKGF~~~~~vG~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~~~~~i 247 (497)
T PLN02405 168 RQRELGFTFSFPVKQTSISSGTLIKWTKGFSIDDAVGQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYNPDVVA 247 (497)
T ss_pred cccccceeEeeeeccCCCCceEEEEeccccccCCccCchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCCCCceE
Confidence 1 234444444320 0000 124444444433 21 1468999999988887543 334568
Q ss_pred EEEeCccceeeeecCC-------------CCeEEeccCCCCcCCcCcHHHHHHHHHHHHHHHhcCCC--CCCh-------
Q 019144 150 VLIAGTGTIAYGFTED-------------GRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRG--PDTM------- 207 (345)
Q Consensus 150 ~v~~GTG~~g~gi~~d-------------G~~~~~Gg~G~~~gd~G~a~~iG~~~~~~~~~~~~g~~--~~~~------- 207 (345)
.+|.|||..++-+-.- ++..-.=|||.+ ++. +.+....-...|... +...
T Consensus 248 G~IlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F-~~~-------~lp~T~~D~~lD~~S~nPG~Q~fEKmiS 319 (497)
T PLN02405 248 AVILGTGTNAAYVERAQAIPKWHGLLPKSGEMVINMEWGNF-RSS-------HLPLTEYDHALDVESLNPGEQIFEKIIS 319 (497)
T ss_pred EEEEeCCeeeEEEeecccCccccccCCCCCeEEEEeccccC-CCC-------CCCCchHHHHHhhcCCCCCcchhhHHHh
Confidence 8999999998765321 122222345532 110 111111111112111 1100
Q ss_pred ------hHHH-HHHHcC------CCChhhHH----------HHhhcCCChHHHhcchHHHHHHH-H-c-C---C-----H
Q 019144 208 ------LTSN-ILSTLE------LSSPDELI----------GWTYVDPSWARIAALVPVVVSCA-E-A-G---D-----E 253 (345)
Q Consensus 208 ------~~~~-~~~~~~------~~~~~~l~----------~~~~~~~~~~~~~~~~~~v~~~a-~-~-g---D-----~ 253 (345)
+.+. ++.... -..+..|. ..+..+.+ .++. .+..+++.. . . - | .
T Consensus 320 G~YLGEivRlvLl~l~~~~~lF~g~~~~~L~~~~~l~T~~ls~i~~D~s-~~l~-~~~~~l~~~l~~~~~~~~~~~~vr~ 397 (497)
T PLN02405 320 GMYLGEILRRVLLKMAEEAAFFGDTVPPKLKIPFILRTPDMSAMHHDTS-PDLK-VVGSKLKDILEIPNTSLKMRKVVVE 397 (497)
T ss_pred hccHHHHHHHHHHHHHHhccccCCCCcHhhcCCCCcccHHHHHHhcCCC-chHH-HHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 1111 111100 00000010 00000000 0110 111111111 0 0 1 1 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCC--CCCccEEEEcCcccCcccccchHHHHHHHHhhCC-----CceeeCCC
Q 019144 254 VANKILQDSVEELALSVKAVVQRLSLSGEDG--KHSFPLVMVGGVLEANRRWDIGREVVKCILRDYP-----GAVPIRPK 326 (345)
Q Consensus 254 ~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~--~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~-----~~~i~~~~ 326 (345)
.|..|.+++++..|-+|+.+++..+...... ..+-.|-+.|++++.++.| .+.+++.+.+..+ .+++..++
T Consensus 398 i~~~V~~RAArL~Aa~iaail~k~~~~~~~~~~~~~~~VavDGsvye~yp~f--~~~~~~~l~ell~~~~~~~v~l~~a~ 475 (497)
T PLN02405 398 LCNIVATRGARLSAAGIYGILKKLGRDTVKDGEKQKSVIAMDGGLFEHYTEF--SKCMESTLKELLGEEVSESIEVEHSN 475 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcceEEEEeCchhhcCcCH--HHHHHHHHHHHhCcccCceEEEEEec
Confidence 5667899999999999999999987311000 1134799999999999987 8888888887742 25666788
Q ss_pred CChHHHHHHHHHHh
Q 019144 327 VEPAVGAALLAWNS 340 (345)
Q Consensus 327 ~a~~~GAa~la~~~ 340 (345)
+.+-+|||++|...
T Consensus 476 DGSGvGAAl~AA~~ 489 (497)
T PLN02405 476 DGSGIGAALLAASH 489 (497)
T ss_pred CchHHHHHHHHHHH
Confidence 89999999998754
No 24
>PRK00976 hypothetical protein; Provisional
Probab=99.24 E-value=4.6e-09 Score=99.55 Aligned_cols=92 Identities=20% Similarity=0.230 Sum_probs=73.4
Q ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCc
Q 019144 241 VPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGA 320 (345)
Q Consensus 241 ~~~v~~~a~~gD~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~ 320 (345)
.+.+++++++||+.|++++++++++|+..+++++++|| |+.|||+||+....++. |.+.+++.+.. .
T Consensus 226 ~~eIfeaA~~GD~~A~~aid~~~~~LA~~IAnLi~llD--------Pe~IVLGGGVS~~~e~~-L~~~I~e~l~~---~- 292 (326)
T PRK00976 226 KEELLEAYEKGDEKAKLAIDTLALFVAMEIASLLLLNP--------EDNVVLAGSVGEMDEPD-VSERIKELLDK---K- 292 (326)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCEEEEcCccccCchhH-HHHHHHHHhcc---c-
Confidence 56889999999999999999999999999999999999 59999999999765331 35555555533 1
Q ss_pred eeeCCCCChHHHHHHHHHHhhhccC
Q 019144 321 VPIRPKVEPAVGAALLAWNSFMNAR 345 (345)
Q Consensus 321 ~i~~~~~a~~~GAa~la~~~~~~~~ 345 (345)
.-...++++++|||.++.+.+.+.|
T Consensus 293 ~a~LG~dAGaiGAA~iA~~i~~G~~ 317 (326)
T PRK00976 293 VLVLGKESAAIGLALIARDIFNGKK 317 (326)
T ss_pred ccccCCchHHHHHHHHHHHHhCCCc
Confidence 1112468999999999998776653
No 25
>PLN02362 hexokinase
Probab=99.17 E-value=6.5e-09 Score=104.71 Aligned_cols=300 Identities=13% Similarity=0.098 Sum_probs=160.8
Q ss_pred ccEEEEEecCccceeeEEEcCccCCCCCCCCCCeeE----EEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCc----
Q 019144 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLA----RAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNR---- 92 (345)
Q Consensus 21 ~~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~----~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~---- 92 (345)
.+.++++|+|||+.|++++.+.|. ....+. +... +........+++++.|.+.|.+++.+.+...
T Consensus 94 ~G~fLAlDlGGTNfRV~~V~L~g~------~~~~~~~~~~~~~I-p~~l~~~~~~eLFd~IA~~i~~fl~~~~~~~~~~~ 166 (509)
T PLN02362 94 IGTYYALDLGGTNFRVLRVQLGGQ------RSSILSQDVERHPI-PQHLMNSTSEVLFDFIASSLKQFVEKEENGSEFSQ 166 (509)
T ss_pred ceeEEEEecCCceEEEEEEEecCC------CcceeeceeEEEec-ChhhccCCHHHHHHHHHHHHHHHHHhcCccccccc
Confidence 458999999999999999999431 112221 2222 2233334678999999999999999875321
Q ss_pred -c-ccceeEEeecCCC-ChhH----------------HHHHHHHHHhhC---CC-CceEEEeCcHHHHHhcccCCCC-Ce
Q 019144 93 -S-AVRAVCLAVSGVN-HPTD----------------QQRILNWLRDIF---PG-NVRLYVHNDALAALASGTMGKL-HG 148 (345)
Q Consensus 93 -~-~i~~Igig~pG~~-~~~~----------------~~~l~~~L~~~~---~~-~~pV~v~NDa~~a~~~~~~g~~-~~ 148 (345)
. .-.|+.++.|=-- +-+. +.++.+.|++.+ +. -.++.|-||+.+.+++..+... ..
T Consensus 167 ~~~l~LGfTFSFPv~Q~si~~g~Li~WtKGF~~~~v~G~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY~~~~~~ 246 (509)
T PLN02362 167 VRRRELGFTFSFPVKQTSISSGILIKWTKGFAISDMVGKDVAECLQGALNRRGLDMRVAALVNDTVGTLALGHYHDPDTV 246 (509)
T ss_pred cccccceeEEeeeeccCCCCceEEEEeccccccCcccCchHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhcCCCCce
Confidence 1 1245555554321 0000 124444554443 21 1468888999988877543333 45
Q ss_pred EEEEeCccceeeeecCCC-------------CeEEeccCCCCcCCcCcHHHHHHHHHHHHHHHhcCCC--CCCh------
Q 019144 149 CVLIAGTGTIAYGFTEDG-------------RDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRG--PDTM------ 207 (345)
Q Consensus 149 v~v~~GTG~~g~gi~~dG-------------~~~~~Gg~G~~~gd~G~a~~iG~~~~~~~~~~~~g~~--~~~~------ 207 (345)
+.+|.|||..++-+-.-. +..-.=|||-. ++. |.+....-...|... +.-.
T Consensus 247 iG~IlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F-~~~-------~lp~T~~D~~lD~~S~nPG~Q~fEKmi 318 (509)
T PLN02362 247 AAVIIGTGTNACYLERTDAIIKCQGLLTTSGSMVVNMEWGNF-WSS-------HLPRTSYDIDLDAESPNPNDQGFEKMI 318 (509)
T ss_pred EEEEEECCccceEeeehhhcccccccCCCCCcEEEEeeccCC-CCC-------CCCCchHHHHHhcCCCCcCcchHHHHH
Confidence 789999999887543111 11111244422 100 011111111112211 1100
Q ss_pred -------hHHH-HHH------HcCCCChhhHH----------HHhhcCCChHHHhcchHHHHHHH-H-c----CC-----
Q 019144 208 -------LTSN-ILS------TLELSSPDELI----------GWTYVDPSWARIAALVPVVVSCA-E-A----GD----- 252 (345)
Q Consensus 208 -------~~~~-~~~------~~~~~~~~~l~----------~~~~~~~~~~~~~~~~~~v~~~a-~-~----gD----- 252 (345)
+.+. ++. .|+ ..+..|. .....+.+ .++. .+..+++.. . . .|
T Consensus 319 SG~YLGEivRlvL~~l~~~~~lF~-~~~~~L~~~~~l~T~~ls~i~~d~s-~~l~-~~~~~l~~~~~~~~~~~~~~~~v~ 395 (509)
T PLN02362 319 SGMYLGDIVRRVILRMSQESDIFG-PVSSRLSTPFVLRTPSVAAMHEDDS-PELQ-EVARILKETLGISEVPLKVRKLVV 395 (509)
T ss_pred hhccHHHHHHHHHHHHHhcccccc-CCcHhhcCCCccccHHHHHHhcCCC-hhHH-HHHHHHHHhcCCCCCCHHHHHHHH
Confidence 1111 110 010 0000000 00000000 0111 111222211 0 0 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCC------------CCCCccEEEEcCcccCcccccchHHHHHHHHhhCC--
Q 019144 253 EVANKILQDSVEELALSVKAVVQRLSLSGED------------GKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYP-- 318 (345)
Q Consensus 253 ~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~------------~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~-- 318 (345)
..|..|.+++++..|-+|+.+++..+..... ...+-.|-+.|++++.++.| .+.+++.+++..+
T Consensus 396 ~i~~~V~~RaArL~Aa~iaail~k~~~~~~~~~~~~~~~~~~~~~~~~~VavDGsvye~yp~f--~~~~~~~l~ell~~~ 473 (509)
T PLN02362 396 KICDVVTRRAARLAAAGIVGILKKIGRDGSGGITSGRSRSDIQIMRRTVVAVEGGLYTNYTMF--REYLHEALNEILGED 473 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccCCCceEEEEEeCchhhcCcCH--HHHHHHHHHHHhCcc
Confidence 4677889999999999999999987621000 01124789999999999887 8888888887742
Q ss_pred ---CceeeCCCCChHHHHHHHHHHh
Q 019144 319 ---GAVPIRPKVEPAVGAALLAWNS 340 (345)
Q Consensus 319 ---~~~i~~~~~a~~~GAa~la~~~ 340 (345)
.+.+..+++.+-+|||++|...
T Consensus 474 ~~~~v~i~~a~DGSgvGAAl~AA~~ 498 (509)
T PLN02362 474 VAQHVILKATEDGSGIGSALLAASY 498 (509)
T ss_pred cCceEEEEEccCchHHHHHHHHHHH
Confidence 2456667889999999998753
No 26
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=99.11 E-value=3.7e-10 Score=89.19 Aligned_cols=93 Identities=13% Similarity=0.175 Sum_probs=70.5
Q ss_pred EEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEee
Q 019144 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~ 102 (345)
.+||+|+|+|+++++++|. +|+++.....++. .+.+.+++.+.+.+++. ++.+|+||+
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~---------~g~~~~~~~~~~~----~~~~~~~~~l~~~i~~~---------~~~~i~Ig~ 59 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDE---------TGKLADPLEVIPR----TNKEADAARLKKLIKKY---------QPDLIVIGL 59 (99)
T ss_pred cEEEEccCCCeEEEEEECC---------CCCEecCEEEEEe----cCcchHHHHHHHHHHHh---------CCCEEEEeC
Confidence 4799999999999999998 8898877665432 13345566666655542 467999999
Q ss_pred cCCCChh---HH-HHHHHHHHhhCCCCceEEEeCcHHHHHh
Q 019144 103 SGVNHPT---DQ-QRILNWLRDIFPGNVRLYVHNDALAALA 139 (345)
Q Consensus 103 pG~~~~~---~~-~~l~~~L~~~~~~~~pV~v~NDa~~a~~ 139 (345)
||.++.. .+ .+|++.|+++++ .||+++||+++..+
T Consensus 60 pg~v~g~~~~~~~~~l~~~l~~~~~--~pv~~~nDa~st~~ 98 (99)
T smart00732 60 PLNMNGTASRETEEAFAELLKERFN--LPVVLVDERLATVY 98 (99)
T ss_pred CcCCCCCcCHHHHHHHHHHHHHhhC--CcEEEEeCCccccc
Confidence 9996422 12 688999999997 89999999997643
No 27
>PLN02596 hexokinase-like
Probab=99.10 E-value=2e-07 Score=93.59 Aligned_cols=297 Identities=12% Similarity=0.054 Sum_probs=159.3
Q ss_pred ccEEEEEecCccceeeEEEcCccCCCCCCCCCCeeE--EEecC-CCCccccCHHHHHHHHHHHHHHHHHHcCCCcc----
Q 019144 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLA--RAAAG-CSNHNSVGEDAARETIEKVMADALLKSGSNRS---- 93 (345)
Q Consensus 21 ~~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~--~~~~~-~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~---- 93 (345)
.+.++++|+|||+.|++++++.|. ...+.. +...+ +........+++++.|.+.|++++++.+....
T Consensus 95 ~G~yLAlDlGGTNfRV~~V~L~g~------~~~~~~~~~~~~~Ip~~l~~~t~~eLFd~IA~~i~~fl~~~~~~~~~~~~ 168 (490)
T PLN02596 95 KGLYYGLNLRGSNFLLLRARLGGK------NEPISDLYREEISIPSNVLNGTSQELFDYIALELAKFVAEHPGDEADTPE 168 (490)
T ss_pred ceEEEEEeeCCceEEEEEEEEcCC------CCceEEEEEEEecCChHhhcCCHHHHHHHHHHHHHHHHHhhccccccCcc
Confidence 457899999999999999999431 111111 12121 22223346788999999999999987653211
Q ss_pred --ccceeEEeecC---------------CCChh-HHHHHHHHHHhhC---CC-CceEEEeCcHHHHHhcccCC-CCCeEE
Q 019144 94 --AVRAVCLAVSG---------------VNHPT-DQQRILNWLRDIF---PG-NVRLYVHNDALAALASGTMG-KLHGCV 150 (345)
Q Consensus 94 --~i~~Igig~pG---------------~~~~~-~~~~l~~~L~~~~---~~-~~pV~v~NDa~~a~~~~~~g-~~~~v~ 150 (345)
--.|+.++.|= +..++ .+.++.+.|++.+ +. -.++.|-||+.+.+++..+. .+..+.
T Consensus 169 ~~l~lGfTFSFP~~Q~si~~G~Li~WKgF~~~~~vG~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY~~~~~~iG 248 (490)
T PLN02596 169 RVKKLGFTVSYPVDQAAASSGSAIKWKSFSADDTVGKALVNDINRALEKHGLKIRVFALVDDTIGNLAGGRYYNKDTVAA 248 (490)
T ss_pred cccccceEEeeeeeecCCCCEEEEEeccccCCCccCcHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhcCCCCeEEE
Confidence 11344444442 11110 1234444444443 21 14689999999888875433 334678
Q ss_pred EEeCccceeeeecCCC-------------CeEEeccCCCCcCCcCcHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcC
Q 019144 151 LIAGTGTIAYGFTEDG-------------RDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLE 217 (345)
Q Consensus 151 v~~GTG~~g~gi~~dG-------------~~~~~Gg~G~~~gd~G~a~~iG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 217 (345)
+|.|||..++-+-.-. +..-.=|||.+-...-. ....+. ..|......+ .+.+++..+
T Consensus 249 ~I~GTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp-----~T~~D~---~lD~~S~nPG-~Q~fEKMiS 319 (490)
T PLN02596 249 VTLGMGTNAAYVEPAQAIPKWQSPSPESQEIVISTEWGNFNSCHLP-----ITEFDA---SLDAESSNPG-SRIFEKLTS 319 (490)
T ss_pred EEEecccceEEEEEccccccccCCCCCCCeEEEEeccccCCCCCCC-----CChHHH---HHhccCCCCC-cchHHHHHh
Confidence 9999999887654211 12222345522110000 011111 1111111100 111111110
Q ss_pred CCChhhHHH---------------------------------HhhcCCChHHHhcchHHHHHH-HH--cCC--------H
Q 019144 218 LSSPDELIG---------------------------------WTYVDPSWARIAALVPVVVSC-AE--AGD--------E 253 (345)
Q Consensus 218 ~~~~~~l~~---------------------------------~~~~~~~~~~~~~~~~~v~~~-a~--~gD--------~ 253 (345)
--..-+|.+ .+..+.+ .+.. .+..+++. .. ... .
T Consensus 320 G~YLGElvRlvl~~l~~~~~lF~~~~~~~L~~~~~l~T~~lS~i~~d~s-~~~~-~~~~~l~~~l~~~~~~~~d~~~lr~ 397 (490)
T PLN02596 320 GMYLGEIVRRVLLKMAEETALFGDTLPPKLTTPYLLRSPDMAAMHQDTS-EDHE-VVNEKLKEIFGITDSTPMAREVVAE 397 (490)
T ss_pred hhhHHHHHHHHHHHHHHhccccCCCCcHhhcCCCccccHHHHHHhcCCC-chHH-HHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 000000000 0000000 0000 01111111 00 011 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCC-----CceeeCCCCC
Q 019144 254 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYP-----GAVPIRPKVE 328 (345)
Q Consensus 254 ~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~-----~~~i~~~~~a 328 (345)
.|..|.+++++..|-+++.+++..+. ....+-.|-+-|++++.++.| .+.+++.+.+..+ .+.+..+++.
T Consensus 398 i~~~V~~RAArL~Aa~iaail~k~g~---~~~~~~~VavDGSvye~~p~f--~~~l~~al~ellg~~~~~~i~~~~s~DG 472 (490)
T PLN02596 398 VCDIVAERGARLAGAGIVGIIKKLGR---IENKKSVVTVEGGLYEHYRVF--RNYLHSSVWEMLGSELSDNVVIEHSHGG 472 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC---CCCCceEEEEeCcceeeCcCH--HHHHHHHHHHHhCcccCCcEEEEEccCc
Confidence 57778999999999999999999862 111135799999999999887 8888888887742 2555567888
Q ss_pred hHHHHHHHHHH
Q 019144 329 PAVGAALLAWN 339 (345)
Q Consensus 329 ~~~GAa~la~~ 339 (345)
.-+|||++|.-
T Consensus 473 SG~GAAl~AA~ 483 (490)
T PLN02596 473 SGAGALFLAAC 483 (490)
T ss_pred hhHHHHHHHHh
Confidence 88999999864
No 28
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=99.03 E-value=4.6e-08 Score=90.50 Aligned_cols=237 Identities=22% Similarity=0.267 Sum_probs=136.9
Q ss_pred EEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEee
Q 019144 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~ 102 (345)
|++|+|+|+|++|++++| +++++.+...++. ..++.+.+.+.+++++.+.++.+|.+|++
T Consensus 1 ~~lGIDiGtts~K~vl~d----------~g~il~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~~i~~i~~-- 60 (248)
T TIGR00241 1 ISLGIDSGSTTTKMVLME----------DGKVIGYKWLDTT--------PVIEETARAILEALKEAGIGLEPIDKIVA-- 60 (248)
T ss_pred CEEEEEcChhheEEEEEc----------CCEEEEEEEecCC--------CCHHHHHHHHHHHHHHcCCChhheeEEEE--
Confidence 579999999999999998 3788888765332 23556677788888888877777877655
Q ss_pred cCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhcc--cCCCCCeEEEEeCccceeeeecCCCCeEEeccCCCCcCC
Q 019144 103 SGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASG--TMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGD 180 (345)
Q Consensus 103 pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~--~~g~~~~v~v~~GTG~~g~gi~~dG~~~~~Gg~G~~~gd 180 (345)
.|.-... .+ +. .+ ..++..+-+.+. ..+..+.++=+-|..+ -.-.+.+|++.. +...+
T Consensus 61 Tg~~~~~--v~--------~~--~~--~~~ei~~~~~g~~~~~~~~~~vidiGgqd~-k~i~~~~g~~~~-----~~~n~ 120 (248)
T TIGR00241 61 TGYGRHK--VG--------FA--DK--IVTEISCHGKGANYLAPEARGVIDIGGQDS-KVIKIDDGKVDD-----FTMND 120 (248)
T ss_pred ECCCccc--cc--------cc--CC--ceEEhhHHHHHHHHHCCCCCEEEEecCCee-EEEEECCCcEee-----eeecC
Confidence 5553210 01 11 12 223333322222 2344455444444444 333345677642 00122
Q ss_pred cCcHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCCCChhhHHHHhhcCCChHHHhc----ch-HHHHHHHHcCCHHH
Q 019144 181 WGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAA----LV-PVVVSCAEAGDEVA 255 (345)
Q Consensus 181 ~G~a~~iG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~-~~v~~~a~~gD~~a 255 (345)
..+++ ...+.+.+...++. +.+++-+...+......+.+ |+ .+++....+|.+.
T Consensus 121 ~ca~G-------------------tg~f~e~~a~~l~~-~~~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~l~~g~~~- 179 (248)
T TIGR00241 121 KCAAG-------------------TGRFLEVTARRLGV-SVEELGSLAEKADRKAKISSMCTVFAESELISLLAAGVKK- 179 (248)
T ss_pred ccccc-------------------ccHHHHHHHHHcCC-CHHHHHHHHhcCCCCCCcCCEeEEEechhHHHHHHCCCCH-
Confidence 21110 01134445555663 45555444332111112221 22 4667777788755
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCc-cEEEEcCcccCcccccchHHHHHHHHhhCCCceeeC---CCCChHH
Q 019144 256 NKILQDSVEELALSVKAVVQRLSLSGEDGKHSF-PLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIR---PKVEPAV 331 (345)
Q Consensus 256 ~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~-~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~i~~---~~~a~~~ 331 (345)
.+++....+.++..+..+++.+++ + .|++.||+..+ +.| .+.+.+.+. .++.. ++..+++
T Consensus 180 ~di~~~~~~~va~~i~~~~~~~~~--------~~~Vvl~GGva~n-~~l--~~~l~~~lg-----~~v~~~~~~~~~~Al 243 (248)
T TIGR00241 180 EDILAGVYESIAERVAEMLQRLKI--------EAPIVFTGGVSKN-KGL--VKALEKKLG-----MKVITPPEPQIVGAV 243 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCC--------CCCEEEECccccC-HHH--HHHHHHHhC-----CcEEcCCCccHHHHH
Confidence 588999999999999998888874 5 89999998864 333 666766663 22322 3457899
Q ss_pred HHHHH
Q 019144 332 GAALL 336 (345)
Q Consensus 332 GAa~l 336 (345)
|||++
T Consensus 244 GaAl~ 248 (248)
T TIGR00241 244 GAALL 248 (248)
T ss_pred HHHhC
Confidence 99863
No 29
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.97 E-value=2.7e-07 Score=86.70 Aligned_cols=248 Identities=13% Similarity=0.179 Sum_probs=137.5
Q ss_pred EEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEee
Q 019144 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~ 102 (345)
+++|||+|+|.+|++++|. ++++.....++. . ++ .+...+++++++++.+....++.+++.
T Consensus 33 ~~~GIDiGStt~K~Vlld~----------~~i~~~~~~~tg-~---~~---~~~a~~~l~~~l~~~g~~~~~v~~~~~-- 93 (293)
T TIGR03192 33 ITCGIDVGSVSSQAVLVCD----------GELYGYNSMRTG-N---NS---PDSAKNALQGIMDKIGMKLEDINYVVG-- 93 (293)
T ss_pred EEEEEEeCchhEEEEEEeC----------CEEEEEEeecCC-C---CH---HHHHHHHHHHHHHHcCCcccceEEEEE--
Confidence 8999999999999999995 467666554332 1 22 345667777888888876666776654
Q ss_pred cCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhccc--CC-CCCeEEEEeCccceeeeecCCCCeEEeccCCCCcC
Q 019144 103 SGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGT--MG-KLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILG 179 (345)
Q Consensus 103 pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~~--~g-~~~~v~v~~GTG~~g~gi~~dG~~~~~Gg~G~~~g 179 (345)
.|.-.. .+++... +.++.-+-+.+.. .+ .-+.+.=+-|=-+=..-+..+|++.. +...
T Consensus 94 TGyGr~------------~~~~a~~--~v~EItaha~Ga~~~~pp~v~tIIDIGGQDsK~I~~d~~G~v~d-----F~MN 154 (293)
T TIGR03192 94 TGYGRV------------NVPFAHK--AITEIACHARGANYMGGNAVRTILDMGGQDCKAIHCDEKGKVTN-----FLMN 154 (293)
T ss_pred ECcchh------------hcchhhc--ceeeHHHHHHHHHHhcCCCCCEEEEeCCCceEEEEEcCCCcEee-----eeec
Confidence 666521 1110011 2344333333322 11 22333322222211111224455432 1123
Q ss_pred CcCcHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCCCChhhHHHHhhcC-CChHHHhc----ch-HHHHHHHHcCCH
Q 019144 180 DWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVD-PSWARIAA----LV-PVVVSCAEAGDE 253 (345)
Q Consensus 180 d~G~a~~iG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~----~~-~~v~~~a~~gD~ 253 (345)
|.++++ . ..+.+.+...++. +.+++-+..... ....++.+ |+ .+|..+..+|-|
T Consensus 155 dkCAAG-T------------------GrFLE~~A~~Lgi-~leel~~~a~~~~~~p~~Iss~CtVFAeSevi~l~~~G~~ 214 (293)
T TIGR03192 155 DKCAAG-T------------------GRGMEVISDLMQI-PIADLGPRSFDVETEPEAVSSICVVFAKSEALGLLKAGYT 214 (293)
T ss_pred Cccccc-c------------------cHHHHHHHHHcCC-CHHHHHHHHHhcCCCCCCcCCcceEeccHhHHHHHHCCCC
Confidence 333221 1 1233444555654 455555543221 11223332 33 367778888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCce-e-eCCCCChHH
Q 019144 254 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAV-P-IRPKVEPAV 331 (345)
Q Consensus 254 ~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~-i-~~~~~a~~~ 331 (345)
. .+|+.-..+.++.-+..++..+.. .+.|++.||+..+. - +...+++.|... +. + ..++..+++
T Consensus 215 ~-edI~aGl~~sia~rv~~~~~~~~i-------~~~v~~~GGva~N~-~--l~~al~~~Lg~~---v~~~p~~p~~~GAl 280 (293)
T TIGR03192 215 K-NMVIAAYCQAMAERVVSLLERIGV-------EEGFFITGGIAKNP-G--VVKRIERILGIK---AVDTKIDSQIAGAL 280 (293)
T ss_pred H-HHHHHHHHHHHHHHHHHHhcccCC-------CCCEEEECcccccH-H--HHHHHHHHhCCC---ceeCCCCccHHHHH
Confidence 6 377777888888887777776654 46799999988653 2 366777766432 22 1 125678999
Q ss_pred HHHHHHHHhhh
Q 019144 332 GAALLAWNSFM 342 (345)
Q Consensus 332 GAa~la~~~~~ 342 (345)
|||++|.+.+.
T Consensus 281 GAAL~A~~~~~ 291 (293)
T TIGR03192 281 GAALFGYTLMQ 291 (293)
T ss_pred HHHHHHHHHhh
Confidence 99999987654
No 30
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=98.84 E-value=1.1e-06 Score=87.28 Aligned_cols=303 Identities=14% Similarity=0.039 Sum_probs=164.7
Q ss_pred ccEEEEEecCccceeeEEEcCccCCCCCCCCC-CeeEE--EecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccc--c
Q 019144 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPL-PVLAR--AAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSA--V 95 (345)
Q Consensus 21 ~~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g-~i~~~--~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~--i 95 (345)
.+.++++|+|||+.|+.++-+.| .. .+... +...|.+......+++++.|..++..++.+.+..... -
T Consensus 85 ~G~~lalDLGGTn~Rv~~v~L~g-------~~~~~~~~~~~~~ip~~~m~gt~~~Lfd~Ia~~l~~F~~~~~~~~~~~l~ 157 (474)
T KOG1369|consen 85 KGKFLALDLGGTNFRVLLVKLGG-------GRTSVRMYNKIYAIPEEIMQGTGEELFDFIARCLADFLDKMGLKGASKLP 157 (474)
T ss_pred CCCEEEEecCCCceEEEEEEecC-------CcccceeeeeeEecCHHHHcCchHHHHHHHHHHHHHHHHHhccccccccc
Confidence 35899999999999999999942 11 12222 2222333333467899999999999999988753221 2
Q ss_pred ceeEEeecCC-C--C------------------hhHHHHHHHHHHhhCCC-CceEEEeCcHHHHHhccc-CCCCCeEEEE
Q 019144 96 RAVCLAVSGV-N--H------------------PTDQQRILNWLRDIFPG-NVRLYVHNDALAALASGT-MGKLHGCVLI 152 (345)
Q Consensus 96 ~~Igig~pG~-~--~------------------~~~~~~l~~~L~~~~~~-~~pV~v~NDa~~a~~~~~-~g~~~~v~v~ 152 (345)
.+.-++.|-- . + .+-..-|.+.|+++.-. -.-+.+-||+...+++++ ...+..+.|+
T Consensus 158 lgFTFSfP~~Q~si~~g~L~~wTkGf~~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~~~~~igvI 237 (474)
T KOG1369|consen 158 LGFTFSFPCRQTSIDKGTLIRWTKGFKATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYEDPNCEIGVI 237 (474)
T ss_pred cceEEeeeeeecccccceEEEecccccchhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecCCCcEEEEE
Confidence 3444555432 0 0 00012355666655421 134899999998877654 4456788999
Q ss_pred eCccceeeeecCCCCeE------------EeccCCCCcCCcCcHHHHH---HHHHHHHHH-----HhcCCCCCCh---hH
Q 019144 153 AGTGTIAYGFTEDGRDA------------RAAGAGPILGDWGSGYGIA---AQALTAVIR-----AYDGRGPDTM---LT 209 (345)
Q Consensus 153 ~GTG~~g~gi~~dG~~~------------~~Gg~G~~~gd~G~a~~iG---~~~~~~~~~-----~~~g~~~~~~---~~ 209 (345)
.|||..++-+...+++- -.=|||-. +++ +...+. ...+++... -++-+.+++- +.
T Consensus 238 ~GTGtNacY~e~~~~i~k~~~~~~~~~miIN~EWG~F-~~~-~~~l~~T~yD~~vD~eS~npG~~~~EKmisGmYLGEiv 315 (474)
T KOG1369|consen 238 FGTGTNACYMEDMRNIEKVEGDAGRGPMCINTEWGAF-GDN-SLDLPRTEYDVVVDEESLNPGKQLFEKMISGMYLGEIV 315 (474)
T ss_pred ECCCccceeeeeccchhhcccccCCCceEEEccccCC-Ccc-ccccchhhHHHHHhhhcCCcchhHHHHHhccccHHHHH
Confidence 99999887665444321 11234421 111 111100 001100000 0000001110 11
Q ss_pred H-HHHHH------cCCC----Chhh----HHHHhhcCCChHHHhcchHHHHHHHH-----cC-----CHHHHHHHHHHHH
Q 019144 210 S-NILST------LELS----SPDE----LIGWTYVDPSWARIAALVPVVVSCAE-----AG-----DEVANKILQDSVE 264 (345)
Q Consensus 210 ~-~~~~~------~~~~----~~~~----l~~~~~~~~~~~~~~~~~~~v~~~a~-----~g-----D~~a~~il~~~~~ 264 (345)
+ .++.. |+.. .+.. .+.....+. ...+....+ +.+... .+ -+.|.-|.+++++
T Consensus 316 R~vLl~m~~~~~lf~~~~~~l~p~~~~T~~~S~i~~D~-~~~l~~~~~-~~~~l~~~~~~~~~r~~V~~vc~~v~~RaA~ 393 (474)
T KOG1369|consen 316 RLVLLDLLEEGLLFGGQSTKLTPFIFETKYVSAIEEDD-TGALQETEK-ILDLLGLETTTTEDRKLVREVCDVVSRRAAR 393 (474)
T ss_pred HHHHHHHhHhhhhhcccccccCcceeccchHHhHhcCC-chHHHHHHH-HHHhhCCCcCcHHHHHHHHHHHHHHHHHHHH
Confidence 1 11111 1100 0000 000111110 011111111 211110 01 1578888999999
Q ss_pred HHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhC-CC--ceeeCCCCChHHHHHHHHHH
Q 019144 265 ELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDY-PG--AVPIRPKVEPAVGAALLAWN 339 (345)
Q Consensus 265 ~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~-~~--~~i~~~~~a~~~GAa~la~~ 339 (345)
.-|-+|+.+++..+. .....-.|-+.|+++..++.| .+.+++.+++.. +. +.+..+++...+|||++|.-
T Consensus 394 L~aagIaail~k~~~---~~~~~~~VgvdGsly~~yP~f--~~~m~~~l~eLlg~~~~v~i~~s~dgSg~GAAL~Aav 466 (474)
T KOG1369|consen 394 LAAAGIAAILNKTGE---LSRKRVTVGVDGSLYKNHPFF--REYLKEALRELLGPSIHVKLVLSEDGSGRGAALIAAV 466 (474)
T ss_pred HHHhHHHHHHHHhcc---cccCceEEEeccchhHcCchH--HHHHHHHHHHHhCCCceEEEEECCCCccccHHHHHHH
Confidence 999999999999772 111124588999999999987 888888888775 33 55667888888999998763
No 31
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.66 E-value=2.3e-05 Score=75.28 Aligned_cols=247 Identities=21% Similarity=0.213 Sum_probs=133.1
Q ss_pred EEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEee
Q 019144 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~ 102 (345)
++||||.|+|.||+++++. +..++.... .++.. .|. ..+.+++++++.+....+|.+ +++
T Consensus 136 ~~LGID~GSTtTK~VLm~d---------~~~I~~~~~-~~t~g---~p~-----~~~~l~~~le~l~~~~~~I~~--~~~ 195 (396)
T COG1924 136 YTLGIDSGSTTTKAVLMED---------GKEILYGFY-VSTKG---RPI-----AEKALKEALEELGEKLEEILG--LGV 195 (396)
T ss_pred EEEEEecCCcceeEEEEeC---------CCeEEEEEE-EcCCC---Chh-----HHHHHHHHHHHcccChheeee--eee
Confidence 9999999999999999996 444444443 33322 222 366777888888776556765 455
Q ss_pred cCCCChhHHHHHHHHHHhhCCCCceEEEeCcHH--HHHhcccCCCCCeEEEEeCccceeeeecCCCCeEEeccCCCCcCC
Q 019144 103 SGVNHPTDQQRILNWLRDIFPGNVRLYVHNDAL--AALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGD 180 (345)
Q Consensus 103 pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~--~a~~~~~~g~~~~v~v~~GTG~~g~gi~~dG~~~~~Gg~G~~~gd 180 (345)
.|.-.. .+..+|.. .-+..+=-++ +|.+ .....+.+.=+-|==+= .-.+.||.+.. +.+.+
T Consensus 196 TGYGR~--------~v~~~~~a-D~~~~Ei~ah~kgA~~--f~p~~dtIiDIGGQD~K-~i~i~dG~v~d-----f~mN~ 258 (396)
T COG1924 196 TGYGRN--------LVGAALGA-DKVVVEISAHAKGARY--FAPDVDTVIDIGGQDSK-VIKLEDGKVDD-----FTMND 258 (396)
T ss_pred ecccHH--------HhhhhhcC-CcceeeeehhHHHHHH--hCCCCcEEEEecCccee-EEEEeCCeeee-----eEecc
Confidence 776532 23334431 2233333333 3322 12333443333332221 12234555532 11233
Q ss_pred cCcHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCCCChhhHHHHhhcCCChHHHhc----ch-HHHHHHHHcCCHHH
Q 019144 181 WGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAA----LV-PVVVSCAEAGDEVA 255 (345)
Q Consensus 181 ~G~a~~iG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~-~~v~~~a~~gD~~a 255 (345)
.++++ +| .+.+.+.+.++. +.+++-+..........+.+ |+ .++..+..+|-+.
T Consensus 259 ~CAAG-tG------------------rFLE~~A~~Lgv-~v~E~~~~A~~~~~~v~i~S~CaVF~eSevi~~~~~G~~~- 317 (396)
T COG1924 259 KCAAG-TG------------------RFLEVIARRLGV-DVEELGKLALKATPPVKINSRCAVFAESEVISALAEGASP- 317 (396)
T ss_pred ccccc-cc------------------hHHHHHHHHhCC-CHHHHHHHHhcCCCCcccCCeeEEEehHHHHHHHHcCCCH-
Confidence 33221 11 123333445553 44555444432111122333 22 3555665666433
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeC---CCCChHH
Q 019144 256 NKILQDSVEELALSVKA-VVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIR---PKVEPAV 331 (345)
Q Consensus 256 ~~il~~~~~~Lg~~l~~-lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~i~~---~~~a~~~ 331 (345)
..|+.-.++.++..+.+ +++.+++ .+.||+.||+..... + ...+...+. .+++. ++..+++
T Consensus 318 EdI~AGl~~Sv~~~v~~~~~~~~~i-------~~~iv~~GGva~n~a-v--~~ale~~lg-----~~V~vP~~~ql~GAi 382 (396)
T COG1924 318 EDILAGLAYSVAENVAEKVIKRVDI-------EEPIVLQGGVALNKA-V--VRALEDLLG-----RKVIVPPYAQLMGAI 382 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCC-------CCCEEEECcchhhHH-H--HHHHHHHhC-----CeeecCCccchhhHH
Confidence 57777788888888877 8888886 345999999885422 2 334444433 33333 3567999
Q ss_pred HHHHHHHHhhh
Q 019144 332 GAALLAWNSFM 342 (345)
Q Consensus 332 GAa~la~~~~~ 342 (345)
|||+++.+...
T Consensus 383 GAAL~a~~~~~ 393 (396)
T COG1924 383 GAALIAKEVYE 393 (396)
T ss_pred HHHHHHhhhhh
Confidence 99999987654
No 32
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=98.64 E-value=1.8e-05 Score=73.37 Aligned_cols=250 Identities=16% Similarity=0.123 Sum_probs=136.3
Q ss_pred EEEEEecCccceeeEEEcCccCCCCCCCCCC---eeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeE
Q 019144 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLP---VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC 99 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~---i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Ig 99 (345)
+++|||+|+|.+|++++|. +++ ++.....++. . .++ .+...+++++++++.++...++.+++
T Consensus 2 ~~~GIDiGStttK~Vlid~---------~~~~~~~~~~~~~~~~-~--~~~---~~~~~~~l~~~~~~~g~~~~~i~~i~ 66 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEV---------DGDKEECLAKRNDRIR-Q--RDP---FKLAEDAYDDLLEEAGLAAADVAYCA 66 (262)
T ss_pred eEEEEEcCcccEEEEEEec---------CCCeeEEEEEEEecCC-C--CCH---HHHHHHHHHHHHHHcCCChhheEEEE
Confidence 6899999999999999996 443 3333322221 1 133 34567788899988888766777655
Q ss_pred EeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhcccCCCCCeEEEEeCccceeeeecCCCCeEEeccCCCCcC
Q 019144 100 LAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILG 179 (345)
Q Consensus 100 ig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~~~g~~~~v~v~~GTG~~g~gi~~dG~~~~~Gg~G~~~g 179 (345)
. .|.-... +.. -. ...-+.-.+..+.+ ..+.-+.++=+-|==+=..-+..+|++.. +...
T Consensus 67 ~--TGYGR~~---~~a------~~--~vtEIt~ha~GA~~--~~p~~~tIiDIGGQD~K~I~~~~~G~v~~-----f~MN 126 (262)
T TIGR02261 67 T--TGEGESL---AFH------TG--HFYSMTTHARGAIY--LNPEARAVLDIGALHGRAIRMDERGKVEA-----YKMT 126 (262)
T ss_pred E--ECCchhh---hhh------cC--CeeEEeHHHHHHHH--HCCCCCEEEEeCCCceEEEEEcCCCcEee-----EEec
Confidence 4 7764321 111 01 12334444444433 12222332222221111111223455532 1123
Q ss_pred CcCcHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCCCChhhHHHHhhcCCChHHHhc----ch-HHHHHHHHcCCHH
Q 019144 180 DWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDPSWARIAA----LV-PVVVSCAEAGDEV 254 (345)
Q Consensus 180 d~G~a~~iG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~-~~v~~~a~~gD~~ 254 (345)
|.++++ .| .+.+.+...++. +.+++-+.........++.+ |+ .+|..+..+|-|.
T Consensus 127 dkCAAG-TG------------------~FLe~~A~~L~i-~leel~~~a~~~~~~~~iss~CtVFaeSevi~~~~~G~~~ 186 (262)
T TIGR02261 127 SQCASG-SG------------------QFLENIARYLGI-AQDEIGSLSQQADNPEKVSGICAVLAETDVINMVSRGISA 186 (262)
T ss_pred Cccccc-cc------------------HHHHHHHHHhCC-CHHHHHHHHhcCCCCCCcCCCceEEchhhHHHHHHCCCCH
Confidence 433321 11 233344445554 45666555433211222332 32 3667777888776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceee---CCCCChHH
Q 019144 255 ANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPI---RPKVEPAV 331 (345)
Q Consensus 255 a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~i~---~~~~a~~~ 331 (345)
.+|+.-..+.++..+.+++..+.. .++.|++.||+..+. - +.+.+++++......+.+. .++..+++
T Consensus 187 -edI~aGl~~sia~r~~~~~~~~~~------~~~~v~~~GGva~n~-~--~~~~le~~l~~~~~~~~v~~~~~~q~~gAl 256 (262)
T TIGR02261 187 -PNILKGIHESMADRLAKLLKSLGA------LDGTVLCTGGLALDA-G--LLEALKDAIQEAKMAVAAENHPDAIYAGAI 256 (262)
T ss_pred -HHHHHHHHHHHHHHHHHHHhccCC------CCCcEEEECcccccH-H--HHHHHHHHhccCCcceEecCCCcchHHHHH
Confidence 478888888888888888887753 134699999987653 3 3777888775431122232 23567899
Q ss_pred HHHHHH
Q 019144 332 GAALLA 337 (345)
Q Consensus 332 GAa~la 337 (345)
|||+++
T Consensus 257 GAAl~~ 262 (262)
T TIGR02261 257 GAALWG 262 (262)
T ss_pred HHHHcC
Confidence 999864
No 33
>PRK13318 pantothenate kinase; Reviewed
Probab=98.51 E-value=9.3e-07 Score=82.30 Aligned_cols=126 Identities=18% Similarity=0.095 Sum_probs=79.3
Q ss_pred EEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEee-
Q 019144 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV- 102 (345)
Q Consensus 24 ~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~- 102 (345)
+|++|+|+|++|++++|. ++++.+.+.++... .+++++. +.++++++..+.+..++.+|+++.
T Consensus 2 iL~IDIGnT~iK~al~d~----------g~i~~~~~~~t~~~--~~~~~~~----~~l~~l~~~~~~~~~~i~~I~issV 65 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEG----------GKLVAHWRISTDSR--RTADEYG----VWLKQLLGLSGLDPEDITGIIISSV 65 (258)
T ss_pred EEEEEECCCcEEEEEEEC----------CEEEEEEEEeCCCC--CCHHHHH----HHHHHHHHHcCCCcccCceEEEEEe
Confidence 789999999999999984 67777766554332 2455544 445556666665555788999998
Q ss_pred -cCCCChhHHHHHHHH----------HHhhCCCCceEEEeCc--------HHHHHhcccCCCCCeEEEEeCccceeeeec
Q 019144 103 -SGVNHPTDQQRILNW----------LRDIFPGNVRLYVHND--------ALAALASGTMGKLHGCVLIAGTGTIAYGFT 163 (345)
Q Consensus 103 -pG~~~~~~~~~l~~~----------L~~~~~~~~pV~v~ND--------a~~a~~~~~~g~~~~v~v~~GTG~~g~gi~ 163 (345)
|+..+.-. ..+.+. .+..++ .|+.++|+ +++.++.+.+. ++.+++.+||++....+.
T Consensus 66 vp~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g--l~~~y~np~~lG~DR~a~~~aa~~~~~-~~~ivid~GTA~t~d~v~ 141 (258)
T PRK13318 66 VPSVMHSLE-RMCRKYFNIEPLVVVGPGVKTG--INIKVDNPKEVGADRIVNAVAAYELYG-GPLIVVDFGTATTFDVVS 141 (258)
T ss_pred cCchHHHHH-HHHHHHhCCCCeEEECCCcCCC--CceecCChhhcchHHHHHHHHHHHHcC-CCEEEEEcCCceEEEEEc
Confidence 54432111 111111 122233 78999999 56554444332 378999999998554334
Q ss_pred CCCCeE
Q 019144 164 EDGRDA 169 (345)
Q Consensus 164 ~dG~~~ 169 (345)
.+|+..
T Consensus 142 ~~g~~~ 147 (258)
T PRK13318 142 AKGEYL 147 (258)
T ss_pred CCCcEE
Confidence 777665
No 34
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.50 E-value=2.5e-05 Score=76.36 Aligned_cols=244 Identities=19% Similarity=0.172 Sum_probs=132.6
Q ss_pred EEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEee
Q 019144 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~ 102 (345)
+++|||+|+|.+|++++|. ++++.....++. . ..+.+.+++++++++.++...++.++++
T Consensus 145 ~~lGIDiGSTttK~Vl~dd----------~~Ii~~~~~~t~-----~---~~~~a~~~l~~~l~~~Gl~~~di~~i~~-- 204 (404)
T TIGR03286 145 LTLGIDSGSTTTKAVVMED----------NEVIGTGWVPTT-----K---VIESAEEAVERALEEAGVSLEDVEAIGT-- 204 (404)
T ss_pred EEEEEEcChhheeeEEEcC----------CeEEEEEEeecc-----c---HHHHHHHHHHHHHHHcCCCccceeEEEe--
Confidence 8999999999999999984 577776654331 1 2456778888889988887767776554
Q ss_pred cCCCChhHHHHHHHHHHhhCCCCceEEEeCcHH--HHHhcccCCC--CCeEEEEeCccceeeeecCCCCeEEeccCCCCc
Q 019144 103 SGVNHPTDQQRILNWLRDIFPGNVRLYVHNDAL--AALASGTMGK--LHGCVLIAGTGTIAYGFTEDGRDARAAGAGPIL 178 (345)
Q Consensus 103 pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~--~a~~~~~~g~--~~~v~v~~GTG~~g~gi~~dG~~~~~Gg~G~~~ 178 (345)
.|.-.. .+.+.|+. ..+.-+-.++ .+.+- .+. +...++-+|+==.=.-.+.||++.. +..
T Consensus 205 TGyGR~--------~i~~~~~a-d~iv~EItaha~GA~~L--~p~~~~v~TIIDIGGQDsK~I~l~~G~v~d-----F~M 268 (404)
T TIGR03286 205 TGYGRF--------TIGEHFGA-DLIQEELTVNSKGAVYL--ADKQEGPATVIDIGGMDNKAISVWDGIPDN-----FTM 268 (404)
T ss_pred eeecHH--------HHhhhcCC-CceEEEEhhHHHHHHHh--cccCCCCcEEEEeCCCceEEEEEcCCceee-----EEE
Confidence 666532 22234431 2222233333 23221 111 1233444442100000113344321 112
Q ss_pred CCcCcHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCCCChhhHHHHhhcC-CChHHHhc----ch-HHHHHHHHcCC
Q 019144 179 GDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVD-PSWARIAA----LV-PVVVSCAEAGD 252 (345)
Q Consensus 179 gd~G~a~~iG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~----~~-~~v~~~a~~gD 252 (345)
.+.+.++ ...+.+.+...++. +.+++.+...+. ....++.+ |+ .++..+..+|-
T Consensus 269 NdkCAAG-------------------TGrFLE~~A~~Lgi-~ieEl~~lA~~~~~~pv~IsS~CtVFaeSevIsll~~G~ 328 (404)
T TIGR03286 269 GGICAGA-------------------SGRFLEMTAKRLGV-DITELGKLALKGMPEKVRMNSYCIVFGIQDLVTALAEGA 328 (404)
T ss_pred cCccccc-------------------CcHHHHHHHHHhCC-CHHHHHHHHHhCCCCCCCccCcccccccHhHHHHHHCCC
Confidence 3333221 11123333344443 455565544322 11122322 22 35667777786
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceee---CCCCC
Q 019144 253 EVANKILQDSVEELALSVKA-VVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPI---RPKVE 328 (345)
Q Consensus 253 ~~a~~il~~~~~~Lg~~l~~-lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~i~---~~~~a 328 (345)
+. .+|+.-..+.++..+.+ ++...+. .++|++.||+..+ +. +...+++.+.. ++. .++..
T Consensus 329 ~~-eDIaAGl~~SIa~rv~~~l~~~~~i-------~~~VvftGGva~N-~g--vv~ale~~Lg~-----~iivPe~pq~~ 392 (404)
T TIGR03286 329 SP-EDVAAAACHSVAEQVYEQQLQEIDV-------REPVILVGGTSLI-EG--LVKALGDLLGI-----EVVVPEYSQYI 392 (404)
T ss_pred CH-HHHHHHHHHHHHHHHHHHHhhcCCC-------CCcEEEECChhhh-HH--HHHHHHHHhCC-----cEEECCcccHH
Confidence 65 47788888888888874 5777765 4569999997644 33 25566665542 222 24678
Q ss_pred hHHHHHHHHH
Q 019144 329 PAVGAALLAW 338 (345)
Q Consensus 329 ~~~GAa~la~ 338 (345)
+++|||++|.
T Consensus 393 GAiGAAL~A~ 402 (404)
T TIGR03286 393 GAVGAALLAS 402 (404)
T ss_pred HHHHHHHHhc
Confidence 9999999874
No 35
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=98.46 E-value=6.1e-05 Score=73.48 Aligned_cols=296 Identities=15% Similarity=0.102 Sum_probs=159.5
Q ss_pred ccEEEEEecCccceeeEEEcCccCCCCCCCCCCeeEE---EecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCc-ccc-
Q 019144 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLAR---AAAGCSNHNSVGEDAARETIEKVMADALLKSGSNR-SAV- 95 (345)
Q Consensus 21 ~~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~---~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~-~~i- 95 (345)
.+.+|.+|+|||+.|++++.++| +|+..-. .+.|..-.....+++++..+++.++.++.+..... .+-
T Consensus 74 ~g~~LaiD~GGTnlRvc~V~l~g-------~gt~~~~~sks~lp~e~~~~~~~~~l~~~iadrl~~fi~~~~~~~~~~~l 146 (466)
T COG5026 74 SGSVLAIDLGGTNLRVCLVVLGG-------DGTFDIEQSKSFLPVECRDSESRDELFGFIADRLAAFIKEQHPSGYGSKL 146 (466)
T ss_pred CCCEEEEecCCceEEEEEEEeCC-------CCCcccccCcccCchhhccCCChHHHHHHHHHHHHHHHHHhCchhccCcc
Confidence 35899999999999999999843 3443222 11111111223689999999999999988764311 111
Q ss_pred -ceeEEeecCCCCh-hH----------------HHHHHHHHHhhCC-CCce---EEEeCcHHHHHhccc-CCCCCeEEEE
Q 019144 96 -RAVCLAVSGVNHP-TD----------------QQRILNWLRDIFP-GNVR---LYVHNDALAALASGT-MGKLHGCVLI 152 (345)
Q Consensus 96 -~~Igig~pG~~~~-~~----------------~~~l~~~L~~~~~-~~~p---V~v~NDa~~a~~~~~-~g~~~~v~v~ 152 (345)
.+..++.|=--.+ ++ +.++.+.|++.+. .++| +.|-||+.+.+++.. .+.++.+.++
T Consensus 147 ~~gfTFSYP~~q~sin~g~l~rwTKgf~i~e~ig~dvv~~l~e~l~~r~~pi~v~aviNDttgtlla~~yt~~~~~iG~I 226 (466)
T COG5026 147 PIGFTFSYPLNQTSINEGQLIRWTKGFDIPEVIGTDVVRLLQEALSARNLPIRVVAVINDTTGTLLASVYTSSETIIGII 226 (466)
T ss_pred eeeEEEeccccccccCceeeEeecccCcchhhhhhhHHHHHHHHHHhcCCceEEEEEecccHHHHHHHhhcCCCCeEEEE
Confidence 3444444432110 00 1244444444432 0134 788999998877653 4567899999
Q ss_pred eCccceeeeecCCCCe--------------EEeccCCCC--------------cCCcCcHHHHHHHHHHHHHHHhcCCCC
Q 019144 153 AGTGTIAYGFTEDGRD--------------ARAAGAGPI--------------LGDWGSGYGIAAQALTAVIRAYDGRGP 204 (345)
Q Consensus 153 ~GTG~~g~gi~~dG~~--------------~~~Gg~G~~--------------~gd~G~a~~iG~~~~~~~~~~~~g~~~ 204 (345)
.|||..|+-+..-|++ .-.=|||-. +.|+-+ -..||+..+ -+.+
T Consensus 227 fGTGtN~~y~e~~~~ipkl~~d~~~~~~pm~iN~EwGsfdn~~~~Lp~t~ydv~idq~s-~~pg~~~~E-------k~~s 298 (466)
T COG5026 227 FGTGTNGCYCEPKGRIPKLPRDDLPETGPMLINCEWGSFDNELSVLPRTKYDVLIDQES-PNPGHQIFE-------KMSS 298 (466)
T ss_pred EecCccceEEeecccCCcCccccccccCCeEEEecccccCcceeeccccceeeeeccCC-CCcchHHHh-------hhhc
Confidence 9999998766543432 112355521 111111 122333221 1212
Q ss_pred CChhH---HH-HH----HHcCC--CChhhHHH----------HhhcCCChHHHhcchHHHHH--HHHcCC--------HH
Q 019144 205 DTMLT---SN-IL----STLEL--SSPDELIG----------WTYVDPSWARIAALVPVVVS--CAEAGD--------EV 254 (345)
Q Consensus 205 ~~~~~---~~-~~----~~~~~--~~~~~l~~----------~~~~~~~~~~~~~~~~~v~~--~a~~gD--------~~ 254 (345)
+|-+- +. +. +.+-. ..++.+.. ....++ ...+.. +...|. .-..+. .+
T Consensus 299 G~yLGellr~~L~~l~~qg~~~~~q~~~~~~~p~~l~t~~~s~i~~D~-~~nl~~-t~~~f~~~~~~~tt~eer~lI~~l 376 (466)
T COG5026 299 GMYLGELLRLILRNLYEQGLIFNGQDPEKLTDPFALSTSVLSRIEEDP-FENLRN-TLTTFLNDFRAPTTKEERKLIRRL 376 (466)
T ss_pred ceeHHHHHHHHHHHHHHHHhhccccchhhcccceeeecchhhhhcccc-ccccch-hHHHHHHHhcCCCCHHHHHHHHHH
Confidence 22111 11 11 11000 00111000 000000 000000 011111 111222 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCC----CceeeCCCCChH
Q 019144 255 ANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYP----GAVPIRPKVEPA 330 (345)
Q Consensus 255 a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~----~~~i~~~~~a~~ 330 (345)
|..|.++++++-+-.++.++..-+. .++-.|..-|.+++.++.| ...+++.++..+. .+.+...++..-
T Consensus 377 ~~~i~~RAArlaa~~iaAi~~ktG~-----~k~~~v~~dGsv~e~yp~f--~~~~~~~l~~~~g~~~~~i~i~~a~dgsg 449 (466)
T COG5026 377 VELIGRRAARLAAVPIAAIVIKTGA-----YKAYHVGADGSVIERYPGF--RSMLREALKALLGEEGEKIKIKPAEDGSG 449 (466)
T ss_pred HHHHHHhhHHHHhhhHHHhhhhcCC-----CccceeeeecchhhhchhH--HHHHHHHHHHhhcccCceeeEEecccCcc
Confidence 6677788888888888887766652 2356788999999998876 8888888875532 355666788888
Q ss_pred HHHHHHHHHh
Q 019144 331 VGAALLAWNS 340 (345)
Q Consensus 331 ~GAa~la~~~ 340 (345)
+|||+.++..
T Consensus 450 lGAAl~a~~~ 459 (466)
T COG5026 450 LGAALCALLA 459 (466)
T ss_pred hHHHHHHHHh
Confidence 9999988754
No 36
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=98.45 E-value=9.7e-05 Score=69.15 Aligned_cols=135 Identities=21% Similarity=0.139 Sum_probs=87.3
Q ss_pred ccEEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCc---cccCHHHHHHHHHHHHHHHHHHcCCCccccce
Q 019144 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNH---NSVGEDAARETIEKVMADALLKSGSNRSAVRA 97 (345)
Q Consensus 21 ~~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~---~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~ 97 (345)
..+++++|+|+|++++++.+. +++++.....+.... .-.+.+.....+.++++.+-...+. ++..
T Consensus 23 ~~~~~~iDiGSssi~~vv~~~---------~~~~~~~~~~~~~~vr~G~i~di~~a~~~i~~~~~~ae~~~g~---~i~~ 90 (267)
T PRK15080 23 SPLKVGVDLGTANIVLAVLDE---------DGQPVAGALEWADVVRDGIVVDFIGAVTIVRRLKATLEEKLGR---ELTH 90 (267)
T ss_pred CCEEEEEEccCceEEEEEEcC---------CCCEEEEEeccccccCCCEEeeHHHHHHHHHHHHHHHHHHhCC---CcCe
Confidence 569999999999999999887 666666655443221 1124555555555555554444444 3667
Q ss_pred eEEeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhcccCCCCCeEEEEeCccceeeeecCCCCeEEe
Q 019144 98 VCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDARA 171 (345)
Q Consensus 98 Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~~~g~~~~v~v~~GTG~~g~gi~~dG~~~~~ 171 (345)
+.+++|.-.+......+.+.+++. ++ .+..+.++..+++.+- ...+.+++=+|.|..-..++.+|++...
T Consensus 91 v~~~vp~~~~~~~~~~~~~~~~~a-Gl-~~~~ii~e~~A~a~~~--~~~~~~vvDIGggtt~i~v~~~g~~~~~ 160 (267)
T PRK15080 91 AATAIPPGTSEGDPRAIINVVESA-GL-EVTHVLDEPTAAAAVL--GIDNGAVVDIGGGTTGISILKDGKVVYS 160 (267)
T ss_pred EEEEeCCCCCchhHHHHHHHHHHc-CC-ceEEEechHHHHHHHh--CCCCcEEEEeCCCcEEEEEEECCeEEEE
Confidence 778999876544444566555544 42 4566899888776542 2234677888888766677788888753
No 37
>PRK13317 pantothenate kinase; Provisional
Probab=98.35 E-value=5.8e-05 Score=71.00 Aligned_cols=253 Identities=17% Similarity=0.170 Sum_probs=118.3
Q ss_pred cEEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEe
Q 019144 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (345)
Q Consensus 22 ~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig 101 (345)
.+.+|||+|+|.+|++++|. ++++..+... . ...+ . +.+++.. ..++..|.
T Consensus 2 ~~~iGIDiGstt~K~v~~~~---------~~~~~~~~~~--~----~~~~----~----~~~~l~~----~~~~~~i~-- 52 (277)
T PRK13317 2 EMKIGIDAGGTLTKIVYLEE---------KKQRTFKTEY--S----AEGK----K----VIDWLIN----LQDIEKIC-- 52 (277)
T ss_pred CceEEEEeCcccEEEEEEcC---------CCeEEEEeec--c----HHHH----H----HHHHhhc----cCCceEEE--
Confidence 48899999999999999997 6666655411 1 1112 2 2222221 12344443
Q ss_pred ecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhcc--c-----CCCCCeEEEEeCccceeeeecCCCCeEEeccC
Q 019144 102 VSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASG--T-----MGKLHGCVLIAGTGTIAYGFTEDGRDARAAGA 174 (345)
Q Consensus 102 ~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~--~-----~g~~~~v~v~~GTG~~g~gi~~dG~~~~~Gg~ 174 (345)
+.|--.. .+.+.+ .++ .|+.=.....+...+. . .+..+.+++..|||. ..-.+.+++..|.+|-
T Consensus 53 ~TG~g~~----~~~~~~--~~~--~~~~~v~E~~a~~~g~~~l~~~~~~~~~~~~i~~iG~g~-si~~~~g~~~~r~~Gt 123 (277)
T PRK13317 53 LTGGKAG----YLQQLL--NYG--YPIAEFVEFEATGLGVRYLLKEEGHDLNDYIFTNIGTGT-SIHYVDGNSQRRVGGT 123 (277)
T ss_pred EECcchh----hhhHHH--hcC--CCeeeeHHHHHHHHHHHHHHHhcCCCCCcEEEEEecCce-EEEEEeCCceEEEccc
Confidence 3554321 122222 233 5542234444333321 1 255678999999997 4445566677775543
Q ss_pred CCCcCCcCcHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCC---CChhhHHHHhhcCC-ChHHHh----cchHHHHH
Q 019144 175 GPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLEL---SSPDELIGWTYVDP-SWARIA----ALVPVVVS 246 (345)
Q Consensus 175 G~~~gd~G~a~~iG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~~~----~~~~~v~~ 246 (345)
+ -|++.-.|--.+ ..+..+ .+.+.+.... +..+-+++.+|... ..-++. .|++ +..
T Consensus 124 ~-----iGGgt~~gL~~l------L~~~~~----~~el~~la~~g~~~~~Dl~v~dIy~~~~~~l~i~s~csvFak-v~~ 187 (277)
T PRK13317 124 G-----IGGGTIQGLSKL------LTNISD----YEQLIELAKHGDRNNIDLKVGDIYKGPLPPIPGDLTASNFGK-VLH 187 (277)
T ss_pred c-----ccHHHHHHHHHH------HhCCCC----HHHHHHHHhcCCCccccceeccccCCCCCCCCCceeEehhhh-hhh
Confidence 2 122222221111 111111 1111111110 01111222333211 111112 2444 333
Q ss_pred HHHcC---CHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceee
Q 019144 247 CAEAG---DEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPI 323 (345)
Q Consensus 247 ~a~~g---D~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~i~ 323 (345)
...+| ...|..++.-.++.++.....+....+. ++|++.|+-+...+. +.+.+.+.+... +.++.
T Consensus 188 l~~~g~~~eDIaasl~~~v~~~I~~lA~~~ar~~~~--------~~Ivf~G~gla~n~~--l~~~l~~~l~~~--~~~~~ 255 (277)
T PRK13317 188 HLDSEFTSSDILAGVIGLVGEVITTLSIQAAREKNI--------ENIVYIGSTLTNNPL--LQEIIESYTKLR--NCTPI 255 (277)
T ss_pred hhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CeEEEECcccccCHH--HHHHHHHHHhcC--CceEE
Confidence 33444 2555666655554444433322333442 578888854434343 355666655422 23333
Q ss_pred C---CCCChHHHHHHHHHHh
Q 019144 324 R---PKVEPAVGAALLAWNS 340 (345)
Q Consensus 324 ~---~~~a~~~GAa~la~~~ 340 (345)
. +++.+++|||+++.+.
T Consensus 256 ~p~~~~~~gAlGAaL~a~~~ 275 (277)
T PRK13317 256 FLENGGYSGAIGALLLATNK 275 (277)
T ss_pred ecCCCchhHHHHHHHHhhhc
Confidence 2 4678999999988653
No 38
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=98.35 E-value=4e-07 Score=91.88 Aligned_cols=101 Identities=12% Similarity=0.129 Sum_probs=80.0
Q ss_pred EEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCC------ccccCHHHHHHHHHHHHHHHHHHcCCCcccccee
Q 019144 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN------HNSVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (345)
Q Consensus 25 lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~------~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~I 98 (345)
||||+|+|++|++++|+ +|+++.+...+.+. ..+++++++++.+.+++++++++++..+.+|.+|
T Consensus 1 lgIDiGtt~ik~~l~d~---------~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~~~~~~~~I~gI 71 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDE---------QGEVIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQASEMGQDIKGI 71 (481)
T ss_pred CceeecCcceEEEEECC---------CCCEEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHhcCCCcccEEEE
Confidence 68999999999999999 99999887765431 1146899999999999999999998888889999
Q ss_pred EEe--ecCCC--ChhH--------H-----HHHHHHHHhhCCCCceEEEeCcHHH
Q 019144 99 CLA--VSGVN--HPTD--------Q-----QRILNWLRDIFPGNVRLYVHNDALA 136 (345)
Q Consensus 99 gig--~pG~~--~~~~--------~-----~~l~~~L~~~~~~~~pV~v~NDa~~ 136 (345)
|++ +||++ +.+. | ....+.|++.++ .|++++|+++.
T Consensus 72 gvs~~~~g~v~~d~~g~~l~~~i~W~D~r~~~~~~~l~~~~~--~~~~~~~~g~~ 124 (481)
T TIGR01312 72 GISGQMHGLVLLDANGEVLRPAILWNDTRTAQECEELEAELG--DERVLEITGNL 124 (481)
T ss_pred EEecCCceeEEECCCcCCCccchhhhccchHHHHHHHHHhcC--HhHHHHHHCCC
Confidence 999 89986 4322 2 123667777776 67778888764
No 39
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=98.30 E-value=0.00012 Score=67.48 Aligned_cols=129 Identities=20% Similarity=0.124 Sum_probs=82.9
Q ss_pred EEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCc---cccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEee
Q 019144 26 GLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNH---NSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (345)
Q Consensus 26 gvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~---~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~ 102 (345)
|+|+|++++|+.+.+- +++.++....+.... .=.+.+.....+.++.+.+-...+. ++..+.+++
T Consensus 1 g~dig~~~ik~v~~~~---------~~~~~~~~~~~~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g~---~~~~vvisV 68 (239)
T TIGR02529 1 GVDLGTANIVIVVLDE---------DGQPVAGVMQFADVVRDGIVVDFLGAVEIVRRLKDTLEQKLGI---ELTHAATAI 68 (239)
T ss_pred CCCcccceEEEEEEec---------CCCEEEEEecccccccCCeEEEhHHHHHHHHHHHHHHHHHhCC---CcCcEEEEE
Confidence 6899999999999887 444556554433211 1134555555555555444333332 466788999
Q ss_pred cCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhcccCCCCCeEEEEeCccceeeeecCCCCeEE
Q 019144 103 SGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDAR 170 (345)
Q Consensus 103 pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~~~g~~~~v~v~~GTG~~g~gi~~dG~~~~ 170 (345)
|...+......+.+.++.. ++ .++.+.|+..+++.+- +..+.+++-+|.|..-..++.+|++..
T Consensus 69 P~~~~~~~r~a~~~a~~~a-Gl-~~~~li~ep~Aaa~~~--~~~~~~vvDiGggtt~i~i~~~G~i~~ 132 (239)
T TIGR02529 69 PPGTIEGDPKVIVNVIESA-GI-EVLHVLDEPTAAAAVL--QIKNGAVVDVGGGTTGISILKKGKVIY 132 (239)
T ss_pred CCCCCcccHHHHHHHHHHc-CC-ceEEEeehHHHHHHHh--cCCCcEEEEeCCCcEEEEEEECCeEEE
Confidence 9987665555566555554 32 5899999999887642 223457788887776666777787764
No 40
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=98.30 E-value=3e-06 Score=77.99 Aligned_cols=74 Identities=22% Similarity=0.286 Sum_probs=62.3
Q ss_pred EEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCC------CccccCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 019144 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~------~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~ 96 (345)
|+||||+|+|++|++++|. +|+++.....+.+ ...+++++++++.+.+++++++++.+..+.+|.
T Consensus 1 y~lgiDiGTts~K~~l~d~---------~g~iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~I~ 71 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDE---------DGKIVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQAGIDPEQIK 71 (245)
T ss_dssp EEEEEEECSSEEEEEEEET---------TSCEEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHCTSCGGGEE
T ss_pred CEEEEEEcccceEEEEEeC---------CCCEEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhhcCcccceeE
Confidence 7999999999999999998 8999998765322 123578999999999999999999988889999
Q ss_pred eeEEeecCC
Q 019144 97 AVCLAVSGV 105 (345)
Q Consensus 97 ~Igig~pG~ 105 (345)
+|+++..|.
T Consensus 72 aI~is~~~~ 80 (245)
T PF00370_consen 72 AIGISGQGH 80 (245)
T ss_dssp EEEEEE-SS
T ss_pred EEEeccccC
Confidence 999987775
No 41
>PRK13321 pantothenate kinase; Reviewed
Probab=98.29 E-value=1.5e-05 Score=74.14 Aligned_cols=125 Identities=16% Similarity=0.062 Sum_probs=78.2
Q ss_pred EEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEeec
Q 019144 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (345)
Q Consensus 24 ~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~p 103 (345)
+|+||+|+|+++++++|. + +++.+.+.++... .+++++.+.+.+.++ +.+.+.+++.+++++..
T Consensus 2 iL~IDIGnT~ik~gl~~~---------~-~i~~~~~~~T~~~--~~~~~~~~~l~~l~~----~~~~~~~~i~~i~vssV 65 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDG---------D-RLLRSFRLPTDKS--RTSDELGILLLSLFR----HAGLDPEDIRAVVISSV 65 (256)
T ss_pred EEEEEECCCeEEEEEEEC---------C-EEEEEEEEecCCC--CCHHHHHHHHHHHHH----HcCCChhhCCeEEEEee
Confidence 699999999999999995 4 7776666554432 356666666655444 44555557888888874
Q ss_pred CCCChhHHHHHHHHHHh-------------------hCCCCceEEEeCc--HHHHHhcccCCCCCeEEEEeCccceeeee
Q 019144 104 GVNHPTDQQRILNWLRD-------------------IFPGNVRLYVHND--ALAALASGTMGKLHGCVLIAGTGTIAYGF 162 (345)
Q Consensus 104 G~~~~~~~~~l~~~L~~-------------------~~~~~~pV~v~ND--a~~a~~~~~~g~~~~v~v~~GTG~~g~gi 162 (345)
- |.....+.+.+++ .++ .|..+.+| +++.+..+.+..++.+++-+||=+---.+
T Consensus 66 v---p~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~y~--~P~~lG~DR~a~~~aa~~~~~~~~~lvid~GTA~T~d~v 140 (256)
T PRK13321 66 V---PPLNYSLESACKRYFGIKPLFVGPGIKTGLKIRYD--NPREVGADRIVNAVAARRLYPDRNLIVVDFGTATTFDCV 140 (256)
T ss_pred c---ccHHHHHHHHHHHHhCCCeEEECCCCCCCcccccC--ChhhccHHHHHHHHHHHHHcCCCCEEEEECCCceEEEEE
Confidence 3 2222223333332 233 57788899 66554444333347899999999755544
Q ss_pred cCCCCeE
Q 019144 163 TEDGRDA 169 (345)
Q Consensus 163 ~~dG~~~ 169 (345)
..+|+..
T Consensus 141 ~~~g~~~ 147 (256)
T PRK13321 141 SGKGEYL 147 (256)
T ss_pred cCCCcEE
Confidence 4555554
No 42
>PRK00047 glpK glycerol kinase; Provisional
Probab=98.23 E-value=4.5e-06 Score=84.84 Aligned_cols=77 Identities=22% Similarity=0.226 Sum_probs=64.1
Q ss_pred CccEEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCC------CCccccCHHHHHHHHHHHHHHHHHHcCCCcc
Q 019144 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC------SNHNSVGEDAARETIEKVMADALLKSGSNRS 93 (345)
Q Consensus 20 ~~~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~------~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~ 93 (345)
|..|+||||+|+|++|++++|. +|+++.....+. ..+.+++++++++.+.+++++++++++..+.
T Consensus 3 m~~~~lgiD~GTts~Ka~l~d~---------~g~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~~ 73 (498)
T PRK00047 3 MKKYILALDQGTTSSRAIIFDH---------DGNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAKAGISPD 73 (498)
T ss_pred ccCEEEEEecCCCceEEEEECC---------CCCEEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCCChh
Confidence 4458999999999999999999 899999865322 2233578999999999999999999888777
Q ss_pred ccceeEEeecCC
Q 019144 94 AVRAVCLAVSGV 105 (345)
Q Consensus 94 ~i~~Igig~pG~ 105 (345)
+|.+|+++..|.
T Consensus 74 ~I~~Igis~~~~ 85 (498)
T PRK00047 74 QIAAIGITNQRE 85 (498)
T ss_pred HeeEEEEecCcc
Confidence 899998887764
No 43
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=98.15 E-value=9.5e-06 Score=82.94 Aligned_cols=75 Identities=19% Similarity=0.170 Sum_probs=63.0
Q ss_pred ccEEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCC--------CCccccCHHHHHHHHHHHHHHHHHHcCCCc
Q 019144 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC--------SNHNSVGEDAARETIEKVMADALLKSGSNR 92 (345)
Q Consensus 21 ~~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~--------~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~ 92 (345)
+.|+||||+|+|++|++++|. +|+++.....+. +...+++++++++.+.+++++++++++.++
T Consensus 2 m~~~lgID~GTts~Ka~l~d~---------~G~~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~~~~~~ 72 (520)
T PRK10939 2 MSYLMALDAGTGSIRAVIFDL---------NGNQIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQKAGIPA 72 (520)
T ss_pred CcEEEEEecCCCceEEEEECC---------CCCEEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHHcCCCc
Confidence 459999999999999999999 899999764431 123467899999999999999999888777
Q ss_pred cccceeEEeecC
Q 019144 93 SAVRAVCLAVSG 104 (345)
Q Consensus 93 ~~i~~Igig~pG 104 (345)
.+|.+|+++..+
T Consensus 73 ~~I~aI~~s~~~ 84 (520)
T PRK10939 73 SDIAAVSATSMR 84 (520)
T ss_pred cceEEEEEECCc
Confidence 789999988665
No 44
>PRK04123 ribulokinase; Provisional
Probab=98.14 E-value=8.2e-06 Score=83.91 Aligned_cols=76 Identities=22% Similarity=0.240 Sum_probs=63.4
Q ss_pred CccEEEEEecCccceeeEEEc-CccCCCCCCCCCCeeEEEecCCC------------CccccCHHHHHHHHHHHHHHHHH
Q 019144 20 GREVILGLDGGTTSTVCICMP-VISMSDSLPDPLPVLARAAAGCS------------NHNSVGEDAARETIEKVMADALL 86 (345)
Q Consensus 20 ~~~~~lgvDiG~t~~~~~l~d-~~~~~~~~~~~g~i~~~~~~~~~------------~~~~~~~~~~~~~l~~~i~~~~~ 86 (345)
|+.|+||||+|+|++|++++| . +|+++.+...+.+ .+.+++++++|+.+.++++++++
T Consensus 1 ~~~~~lgiD~GTts~Ka~l~d~~---------~g~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~ 71 (548)
T PRK04123 1 MMAYVIGLDFGTDSVRALLVDCA---------TGEELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLK 71 (548)
T ss_pred CCcEEEEEecCCCceEEEEEECC---------CCcEeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999 6 7898887654332 12457899999999999999999
Q ss_pred HcCCCccccceeEEeecC
Q 019144 87 KSGSNRSAVRAVCLAVSG 104 (345)
Q Consensus 87 ~~~~~~~~i~~Igig~pG 104 (345)
+++.++.+|.+||++..|
T Consensus 72 ~~~~~~~~I~aIgis~~~ 89 (548)
T PRK04123 72 EAGVDPAAVVGIGVDFTG 89 (548)
T ss_pred HcCCChhhEEEEEEeccc
Confidence 988877789999887765
No 45
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=98.08 E-value=1.4e-05 Score=81.14 Aligned_cols=74 Identities=22% Similarity=0.228 Sum_probs=62.6
Q ss_pred EEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCC------CccccCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 019144 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~------~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~ 96 (345)
|+||||+|+|++|++++|. +++++.....+.. .+.+++++++++.+.+++++++++.+..+.+|.
T Consensus 2 ~~lgiDiGtt~iKa~l~d~---------~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~~i~ 72 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDK---------DGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAKAGIKPDDIA 72 (493)
T ss_pred eEEEEecCCCceEEEEECC---------CCCEEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCCChhhee
Confidence 7999999999999999998 8999988766332 122468999999999999999999887777899
Q ss_pred eeEEeecCC
Q 019144 97 AVCLAVSGV 105 (345)
Q Consensus 97 ~Igig~pG~ 105 (345)
+||++..+.
T Consensus 73 aIgis~~~~ 81 (493)
T TIGR01311 73 AIGITNQRE 81 (493)
T ss_pred EEEEecCcc
Confidence 998887764
No 46
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=98.03 E-value=2e-05 Score=80.21 Aligned_cols=77 Identities=22% Similarity=0.196 Sum_probs=65.1
Q ss_pred CccEEEEEecCccceeeEEEcCccCCCCCCCC-CCeeEEEecCCCC------ccccCHHHHHHHHHHHHHHHHHHcCCCc
Q 019144 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDP-LPVLARAAAGCSN------HNSVGEDAARETIEKVMADALLKSGSNR 92 (345)
Q Consensus 20 ~~~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~-g~i~~~~~~~~~~------~~~~~~~~~~~~l~~~i~~~~~~~~~~~ 92 (345)
|+.|+||||+|+|++|++++|. + ++++...+..... +.+++++++|+.+.++++++++++.+..
T Consensus 2 ~~~~~lgIDiGTt~~Kavl~d~---------~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~~~~~~ 72 (502)
T COG1070 2 MMKYVLGIDIGTTSVKAVLFDE---------DGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEESKIDP 72 (502)
T ss_pred CccEEEEEEcCCCcEEEEEEeC---------CCCeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHhcccCh
Confidence 4579999999999999999999 6 8888877653321 2357999999999999999999988888
Q ss_pred cccceeEEeecCC
Q 019144 93 SAVRAVCLAVSGV 105 (345)
Q Consensus 93 ~~i~~Igig~pG~ 105 (345)
.+|.+|+|+..|.
T Consensus 73 ~~I~aI~is~~~~ 85 (502)
T COG1070 73 DAIAAIGISGQGH 85 (502)
T ss_pred hhceEEEEecccc
Confidence 8899998887775
No 47
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=98.00 E-value=2.8e-05 Score=79.19 Aligned_cols=74 Identities=19% Similarity=0.150 Sum_probs=61.7
Q ss_pred EEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCC------CccccCHHHHHHHHHHHHHHHHHHcCCCcc--c
Q 019144 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRS--A 94 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~------~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~--~ 94 (345)
|+||||+|+|++|++++|. +|+++.....+.+ ...+++++++++.+++++++++.+.+..+. +
T Consensus 3 ~~lgiDiGTts~Ka~l~d~---------~G~~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~~~~~~~~ 73 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDE---------KGNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKLREKGPSFK 73 (504)
T ss_pred EEEEEecCCCceEEEEECC---------CCCEEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCCCCccCc
Confidence 8999999999999999999 8999887655322 233578999999999999999998876665 7
Q ss_pred cceeEEeecCC
Q 019144 95 VRAVCLAVSGV 105 (345)
Q Consensus 95 i~~Igig~pG~ 105 (345)
|.+|+++..|.
T Consensus 74 I~aIgis~q~~ 84 (504)
T PTZ00294 74 IKAIGITNQRE 84 (504)
T ss_pred eEEEEeecCcc
Confidence 99998887764
No 48
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=97.99 E-value=0.0046 Score=60.42 Aligned_cols=119 Identities=19% Similarity=0.179 Sum_probs=77.3
Q ss_pred hHHHHHHHcCCCChhhHHHHhhcCCChHHHhc----ch-HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 019144 208 LTSNILSTLELSSPDELIGWTYVDPSWARIAA----LV-PVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGE 282 (345)
Q Consensus 208 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~-~~v~~~a~~gD~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~ 282 (345)
+.+.+...++. +.+++-+...+......+.+ |+ .+|..+..+|-|. .+|+.-..+.++.-+.+++....+
T Consensus 306 FLE~mA~~Lgi-~leEl~~lA~~a~~pv~ISS~CtVFAESEVIslla~G~~r-eDIaAGL~~SIA~Rv~s~l~r~~~--- 380 (432)
T TIGR02259 306 YLGYIADEMNM-GLHELGPLAMKSSKPARINSTCTVFAGAELRDRLALGDKR-EDILAGLHRAIILRAISIISRSGG--- 380 (432)
T ss_pred HHHHHHHHcCC-CHHHHHHHHhcCCCCCCcCCcceEEehHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHhcccC---
Confidence 34445556664 56666665443222223333 32 3677888888877 478888888888888888777631
Q ss_pred CCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeC---CCCChHHHHHHHH
Q 019144 283 DGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIR---PKVEPAVGAALLA 337 (345)
Q Consensus 283 ~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~i~~---~~~a~~~GAa~la 337 (345)
-.+.|++.||+..+. -+ ...+++.+....++.++.. ++..+++|||+++
T Consensus 381 ---i~~~VvftGGvA~N~-gv--v~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 381 ---ITDQFTFTGGVAKNE-AA--VKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred ---CCCCEEEECCccccH-HH--HHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 135799999998653 33 7788888866544455443 3578899999764
No 49
>PLN02295 glycerol kinase
Probab=97.98 E-value=2.5e-05 Score=79.78 Aligned_cols=73 Identities=19% Similarity=0.162 Sum_probs=60.2
Q ss_pred EEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCC------CccccCHHHHHHHHHHHHHHHHHHcCCCccc--
Q 019144 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSA-- 94 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~------~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~-- 94 (345)
|+||||+|+|++|++++|. +|+++.....+.+ .+.+++++++|+.+.+++++++++++.++.+
T Consensus 1 ~vlgID~GTts~Ka~l~d~---------~G~~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~~~~~~~i~ 71 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDR---------DARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKAAAKGHNVD 71 (512)
T ss_pred CEEEEecCCCceEEEEECC---------CCCEEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 5899999999999999999 8999987655332 2346799999999999999999998877666
Q ss_pred --cceeEEeecC
Q 019144 95 --VRAVCLAVSG 104 (345)
Q Consensus 95 --i~~Igig~pG 104 (345)
|.+|+++-.+
T Consensus 72 ~~i~aIg~s~q~ 83 (512)
T PLN02295 72 SGLKAIGITNQR 83 (512)
T ss_pred cceEEEEEecCc
Confidence 6888776654
No 50
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=97.97 E-value=2.1e-05 Score=80.80 Aligned_cols=72 Identities=19% Similarity=0.198 Sum_probs=60.5
Q ss_pred EEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCC------CCccccCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 019144 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC------SNHNSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~------~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~ 96 (345)
++||||+|+|++|++++|. +|+++.+...+. +.+.+++++++++.+.+++++++++.+....+|.
T Consensus 1 ~~lgID~GTts~Ka~l~d~---------~G~i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~~~~I~ 71 (541)
T TIGR01315 1 HYIGVDVGTGSARACIIDS---------TGDILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAESKVDPNSVK 71 (541)
T ss_pred CEEEEEecCcCEEEEEEcC---------CCCEEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHHcCCChhheE
Confidence 4799999999999999999 899998765321 1234679999999999999999999887777899
Q ss_pred eeEEeec
Q 019144 97 AVCLAVS 103 (345)
Q Consensus 97 ~Igig~p 103 (345)
+|||+.+
T Consensus 72 ~Igis~~ 78 (541)
T TIGR01315 72 GIGFDAT 78 (541)
T ss_pred EEEeccc
Confidence 9998864
No 51
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=97.96 E-value=2.8e-05 Score=79.84 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=61.3
Q ss_pred EEEEEecCccceeeEEEc-CccCCCCCCCCCCeeEEEecCC-----------------CCccccCHHHHHHHHHHHHHHH
Q 019144 23 VILGLDGGTTSTVCICMP-VISMSDSLPDPLPVLARAAAGC-----------------SNHNSVGEDAARETIEKVMADA 84 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d-~~~~~~~~~~~g~i~~~~~~~~-----------------~~~~~~~~~~~~~~l~~~i~~~ 84 (345)
|+||||+|+|++|++++| . +|++++....+. ....+++++++|+.+.++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~---------~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~ 72 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVA---------TGEEIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTV 72 (536)
T ss_pred eEEEEecCCCceEEEEEECC---------CCcEeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHH
Confidence 799999999999999999 8 899988765422 1234678999999999999999
Q ss_pred HHHcCCCccccceeEEeecC
Q 019144 85 LLKSGSNRSAVRAVCLAVSG 104 (345)
Q Consensus 85 ~~~~~~~~~~i~~Igig~pG 104 (345)
+++.+..+.+|.+|+++-.+
T Consensus 73 ~~~~~~~~~~I~aI~~s~q~ 92 (536)
T TIGR01234 73 LAELGVDPADVVGIGVDFTA 92 (536)
T ss_pred HHHcCCCHHHEEEEEEecCc
Confidence 99988777789998887664
No 52
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=97.93 E-value=2.8e-05 Score=76.76 Aligned_cols=73 Identities=22% Similarity=0.248 Sum_probs=64.3
Q ss_pred cEEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecC------CCCccccCHHHHHHHHHHHHHHHHHHcCCCcccc
Q 019144 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG------CSNHNSVGEDAARETIEKVMADALLKSGSNRSAV 95 (345)
Q Consensus 22 ~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~------~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i 95 (345)
.|+++||.|+|++|+.++|- +|+++++...+ -+.+.+++|.++++.+..++.+++.++++.+.+|
T Consensus 5 ~yIlAiDqGTTssRaivfd~---------~g~iva~~q~e~~Q~yP~~GWVEhDp~eIw~~~~~~l~~a~~~~~i~~~~i 75 (499)
T COG0554 5 KYILAIDQGTTSSRAIVFDE---------DGNIVAIAQREFTQIYPQPGWVEHDPLEIWASVRSVLKEALAKAGIKPGEI 75 (499)
T ss_pred cEEEEEecCCcceeEEEECC---------CCCchhhhhhhhhhhCCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccce
Confidence 59999999999999999999 89999876543 3445689999999999999999999999999999
Q ss_pred ceeEEeec
Q 019144 96 RAVCLAVS 103 (345)
Q Consensus 96 ~~Igig~p 103 (345)
.+|||.--
T Consensus 76 aaIGITNQ 83 (499)
T COG0554 76 AAIGITNQ 83 (499)
T ss_pred EEEEeecc
Confidence 99988644
No 53
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=97.86 E-value=0.0026 Score=59.05 Aligned_cols=261 Identities=17% Similarity=0.119 Sum_probs=143.5
Q ss_pred CccEEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHH------HHH---HHHHHHHHHHHcCC
Q 019144 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAA------RET---IEKVMADALLKSGS 90 (345)
Q Consensus 20 ~~~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~------~~~---l~~~i~~~~~~~~~ 90 (345)
|+..++-|.=|.|+|+++++.- .+.+...... ++.+|+ .++ =.+.+.+++.+.+.
T Consensus 1 ~~yriltINPGststKlaVfe~----------ek~ife~tlr------hs~eEl~~f~~i~dQ~~fR~~~i~~~i~e~g~ 64 (358)
T COG3426 1 MMYRILTINPGSTSTKLAVFED----------EKEIFEKTLR------HSLEELEKFKRIPDQFEFRKDAILEFIDEQGY 64 (358)
T ss_pred CceeEEEecCCCccceEEEecC----------chHhhHHHhh------cCHHHHHHHhhhhHhHhHHHHHHHHHHHHhCC
Confidence 3456888999999999999984 3444443321 223332 222 23567788888887
Q ss_pred CccccceeEEeecCCCCh----------hH----------------HHHHHHHHHhhCCCCceEEEeCcH------HHHH
Q 019144 91 NRSAVRAVCLAVSGVNHP----------TD----------------QQRILNWLRDIFPGNVRLYVHNDA------LAAL 138 (345)
Q Consensus 91 ~~~~i~~Igig~pG~~~~----------~~----------------~~~l~~~L~~~~~~~~pV~v~NDa------~~a~ 138 (345)
+.+++.++ +|=-|+..| .. +..|...+.+.++ .|.||.--+ ..|-
T Consensus 65 ~i~~~dAv-vgRGGLL~pi~gGTY~Vn~~M~~~lk~~~~G~haSnLGaiiA~~ia~~~g--vPayIVDPvvVDEm~~~Ar 141 (358)
T COG3426 65 NISKFDAV-VGRGGLLRPIPGGTYVVNEKMLKDLKNGVQGEHASNLGAIIANRIAKALG--VPAYIVDPVVVDEMEDVAR 141 (358)
T ss_pred CcCCccce-eecCccccccCCceeEeCHHHHHHHHcCCCCcchhhhhHHHHHHHhhhcC--CCeeeeCceehhhcchhhh
Confidence 77776654 343343221 11 1245556666665 554443322 1111
Q ss_pred h--------------------c-----c---cCCCCCeEEEEeCccceeeeecCCCCeEEeccCCCCcCCcCcHHHHHHH
Q 019144 139 A--------------------S-----G---TMGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQ 190 (345)
Q Consensus 139 ~--------------------~-----~---~~g~~~~v~v~~GTG~~g~gi~~dG~~~~~Gg~G~~~gd~G~a~~iG~~ 190 (345)
+ + + ...+-+.++...|.|+.. +--.+|++.-.-.- -|-++++..
T Consensus 142 ~SG~p~i~RkSiFHALN~KAVarr~A~e~gk~yee~n~vVaHmGggiSV-~ah~~GrvIDvnna----ldgeGPfsp--- 213 (358)
T COG3426 142 FSGIPEIERKSIFHALNQKAVARRAAKEVGKRYEEMNIVVAHMGGGISV-GAHKQGRVIDVNNA----LDGEGPFSP--- 213 (358)
T ss_pred hcCCccchhHHHHHHhhHHHHHHHHHHHhccchhhheEEEEeccCceEE-EEecCCcEEeccCC----CCCCCCCCc---
Confidence 1 0 0 112235677778888744 45578998741110 111111110
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHcCCCChhhHHHHhhcCC-ChHHH-hcchHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 019144 191 ALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELIGWTYVDP-SWARI-AALVPVVVSCAEAGDEVANKILQDSVEELAL 268 (345)
Q Consensus 191 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~-~~~~~~v~~~a~~gD~~a~~il~~~~~~Lg~ 268 (345)
...|..+...+.+.|.+ +.-+.++|++.+.+.. -.+.+ +..++.+...+++||+.|+.+++..+..+++
T Consensus 214 -------ersG~lP~~dlv~lcfS--gk~t~~El~k~i~g~gG~~aylGT~d~~~v~~~~~~Gd~~a~~~~~AmayQVaK 284 (358)
T COG3426 214 -------ERSGTLPTGDLVRLCFS--GKYTEEELLKKITGKGGLVAYLGTNDAKEVERRIEQGDEKAKLAYEAMAYQVAK 284 (358)
T ss_pred -------ccCCCCChHHHHHHHhc--CcccHHHHHHHhhcCCceEEEeccchHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 01111121122222111 1113566666654321 00000 1234677889999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCC
Q 019144 269 SVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPK 326 (345)
Q Consensus 269 ~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~i~~~~ 326 (345)
.|......|. ..|+.|||.||+... +.| ...+.+++.-- .++.+.+.+
T Consensus 285 eIG~~savL~------G~vDaIvLTGGiA~~-~~f--~~~I~~~v~~i-apv~v~PGE 332 (358)
T COG3426 285 EIGAMSAVLK------GKVDAIVLTGGIAYE-KLF--VDAIEDRVSWI-APVIVYPGE 332 (358)
T ss_pred HHHhhhhhcC------CCCCEEEEecchhhH-HHH--HHHHHHHHhhh-cceEecCCc
Confidence 9999999997 568999999999843 344 56666665533 234455543
No 54
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=97.86 E-value=5.5e-05 Score=77.05 Aligned_cols=73 Identities=15% Similarity=0.204 Sum_probs=60.4
Q ss_pred EEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCC------CccccCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 019144 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~------~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~ 96 (345)
|+||||+|+|++|++++|. +|+++.+...+.+ ...+++++++++.+.+.+++++++.+.. .+|.
T Consensus 1 ~~lgiDiGtt~~K~~l~d~---------~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~-~~I~ 70 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEE---------NGKIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSINLEDE-DEIL 70 (505)
T ss_pred CEEEEeccccceEEEEEcC---------CCCEEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHhCCCc-CceE
Confidence 5899999999999999999 8999998776322 1234689999999999999999887655 6799
Q ss_pred eeEEeecCC
Q 019144 97 AVCLAVSGV 105 (345)
Q Consensus 97 ~Igig~pG~ 105 (345)
+|||+..|.
T Consensus 71 ~Igis~~~~ 79 (505)
T TIGR01314 71 FVSFSTQMH 79 (505)
T ss_pred EEEEecccc
Confidence 999987763
No 55
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=97.85 E-value=3.7e-05 Score=76.92 Aligned_cols=76 Identities=21% Similarity=0.202 Sum_probs=65.9
Q ss_pred CccEEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecC------CCCccccCHHHHHHHHHHHHHHHHHHcCCCcc
Q 019144 20 GREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG------CSNHNSVGEDAARETIEKVMADALLKSGSNRS 93 (345)
Q Consensus 20 ~~~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~------~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~ 93 (345)
|+.|+||||.|+.+-|+.++|.. +|+++++...+ .++..+++++++++.+++.++++++++++++.
T Consensus 1 ~~~~~iGvDvGTgSaRA~v~D~~--------~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~agv~~~ 72 (544)
T COG1069 1 MMAYVIGVDVGTGSARAGVFDCQ--------TGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAKAGVDPA 72 (544)
T ss_pred CccEEEEEeecCCceeEEEEEcC--------CCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHHcCCChh
Confidence 56799999999999999999992 49999987654 23445688999999999999999999999999
Q ss_pred ccceeEEeec
Q 019144 94 AVRAVCLAVS 103 (345)
Q Consensus 94 ~i~~Igig~p 103 (345)
+|.+|||-..
T Consensus 73 ~V~gIGvDaT 82 (544)
T COG1069 73 DVVGIGVDAT 82 (544)
T ss_pred HeeEEEEcce
Confidence 9999999776
No 56
>PRK10331 L-fuculokinase; Provisional
Probab=97.83 E-value=7.8e-05 Score=75.28 Aligned_cols=72 Identities=21% Similarity=0.249 Sum_probs=58.6
Q ss_pred cEEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCC--------CccccCHHHHHHHHHHHHHHHHHHcCCCcc
Q 019144 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS--------NHNSVGEDAARETIEKVMADALLKSGSNRS 93 (345)
Q Consensus 22 ~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~--------~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~ 93 (345)
.|+||||+|+|++|++++|. +|+++.....+.. .+.+++++++++.+.+++++++++. +..
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~---------~G~~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~--~~~ 70 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDR---------QGKIVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSEL--TEC 70 (470)
T ss_pred ceEEEEecCCCceEEEEEcC---------CCcEEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHhC--Ccc
Confidence 38999999999999999999 8999988766422 1335799999999999999999875 234
Q ss_pred ccceeEEeecC
Q 019144 94 AVRAVCLAVSG 104 (345)
Q Consensus 94 ~i~~Igig~pG 104 (345)
+|.+|+++..+
T Consensus 71 ~I~~I~is~~~ 81 (470)
T PRK10331 71 HIRGITVTTFG 81 (470)
T ss_pred ceEEEEEeccc
Confidence 68888887655
No 57
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=97.81 E-value=8.1e-05 Score=75.08 Aligned_cols=72 Identities=19% Similarity=0.219 Sum_probs=58.1
Q ss_pred cEEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCC--------CCccccCHHHHHHHHHHHHHHHHHHcCCCcc
Q 019144 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC--------SNHNSVGEDAARETIEKVMADALLKSGSNRS 93 (345)
Q Consensus 22 ~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~--------~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~ 93 (345)
+++||||+|+|++|++++|. +|++++....+. +.+.+++++++|+.+.+++++++.+ ..+.
T Consensus 1 ~~ilgiD~GTss~K~~l~d~---------~g~~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~--~~~~ 69 (465)
T TIGR02628 1 EVILVLDCGATNLRAIAINR---------QGKIVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE--LTEK 69 (465)
T ss_pred CeEEEEecCCCcEEEEEEcC---------CCCEEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh--cChh
Confidence 37999999999999999999 899998766431 1234679999999999999999865 3445
Q ss_pred ccceeEEeecC
Q 019144 94 AVRAVCLAVSG 104 (345)
Q Consensus 94 ~i~~Igig~pG 104 (345)
+|.+|+++..|
T Consensus 70 ~I~aI~~s~~~ 80 (465)
T TIGR02628 70 HIRGIAVTTFG 80 (465)
T ss_pred ceEEEEEeccc
Confidence 69999887655
No 58
>PRK15027 xylulokinase; Provisional
Probab=97.76 E-value=9.5e-05 Score=74.95 Aligned_cols=71 Identities=15% Similarity=0.131 Sum_probs=57.3
Q ss_pred EEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCC------CccccCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 019144 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~------~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~ 96 (345)
++||||+|+|++|++++|. +|++++....+.+ ...+++++++++.+.+++++++++. +..+|.
T Consensus 1 ~~lgID~GTts~Ka~l~d~---------~G~vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~--~~~~I~ 69 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNE---------QGEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQH--SLQDVK 69 (484)
T ss_pred CEEEEEecccceEEEEEcC---------CCCEEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhC--Ccccee
Confidence 5899999999999999999 8999987644322 2345789999999999999999876 345799
Q ss_pred eeEEeecC
Q 019144 97 AVCLAVSG 104 (345)
Q Consensus 97 ~Igig~pG 104 (345)
+|+++..+
T Consensus 70 aI~is~q~ 77 (484)
T PRK15027 70 ALGIAGQM 77 (484)
T ss_pred EEEEecCC
Confidence 98886543
No 59
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=97.59 E-value=0.005 Score=57.90 Aligned_cols=253 Identities=15% Similarity=0.134 Sum_probs=123.7
Q ss_pred EEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEeec
Q 019144 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (345)
Q Consensus 24 ~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~p 103 (345)
.+|+|+|+|-+|++..|. +++++.... ++. ..+++++.+.+... .. ..+.. +.+.
T Consensus 2 ~iGiDiGgT~~Kiv~~~~---------~~~~~f~~~-~~~-----~~~~~~~~l~~~~~----~~----~~~~~--i~~T 56 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEEP---------KGRRKFKTF-ETT-----NIDKFIEWLKNQIH----RH----SRITT--LCAT 56 (279)
T ss_pred eEEEEeCcceEEEEEEcC---------CCcEEEEEe-ecc-----cHHHHHHHHHHHHH----hh----cCceE--EEEE
Confidence 589999999999999988 788776654 332 34556655554332 22 12333 4445
Q ss_pred CCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhcc------c--CCCCCeEEEEeCccceeeeecCCCCeEEeccCC
Q 019144 104 GVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASG------T--MGKLHGCVLIAGTGTIAYGFTEDGRDARAAGAG 175 (345)
Q Consensus 104 G~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~------~--~g~~~~v~v~~GTG~~g~gi~~dG~~~~~Gg~G 175 (345)
|--. ..+.+.+...|+ .++.-.....+...+. . ......+++.+|+|+.-. .+...+..|.||-+
T Consensus 57 GgGa----~k~~~~~~~~~~--v~~~k~dE~~a~~~g~~~ll~~~~~~~~~p~llvnIGsGvSi~-~v~~~~~~Rv~Gt~ 129 (279)
T TIGR00555 57 GGGA----FKFAELIYESAG--IQLHKFDEFDALIQGLNYLLKEEPKDDIYPYLLVNIGTGTSIL-YVDGDNYERVGGTS 129 (279)
T ss_pred CCcH----HHHHHHhccccC--CcccchhHHHHHHHHHHHHhhcccCCCCCceEEEEecCCeEEE-EEcCccEEEEcCcc
Confidence 5432 346666766664 4443344444443321 1 122356889999997322 22222555655432
Q ss_pred CCcCCcCcHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCCC---ChhhHHHHhhcCC------ChHHHhc-chHHHH
Q 019144 176 PILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELS---SPDELIGWTYVDP------SWARIAA-LVPVVV 245 (345)
Q Consensus 176 ~~~gd~G~a~~iG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~------~~~~~~~-~~~~v~ 245 (345)
-|++.=+|--.+ ..+..+ .+.+.+..... +.+-+++.+|.+. +..-+++ +.+...
T Consensus 130 -----iGGGTf~GL~~L------L~~~~~----~~el~~lA~~G~~~~vDl~V~dIYg~~y~~~~L~~d~iASsfGkv~~ 194 (279)
T TIGR00555 130 -----LGGGTFLGLGKL------LTGIQT----FDELLEMAQHGDRTNVDLLVGDIYGGDYSESGLDGSLTASSFGKVLS 194 (279)
T ss_pred -----ccHHHHHHHHHH------HcCCCC----HHHHHHHHHcCCCcccccccccccCCCCCCCCCCcceeeeccchhhc
Confidence 222222233222 122111 12222221111 1223334444311 1111222 222221
Q ss_pred HHHHc---CCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCcee
Q 019144 246 SCAEA---GDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVP 322 (345)
Q Consensus 246 ~~a~~---gD~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~i 322 (345)
....+ ....|..+++-.+..++..........+ -.+|++.|+.+...+. +++.+.+.+.-+ ..++
T Consensus 195 ~~~~~~~~~eDiAaSLl~mV~~nIg~lA~~~a~~~~--------~~~IvF~Gg~L~~~~~--l~~~~~~~~~~~--~~~~ 262 (279)
T TIGR00555 195 KHLDQSFSPEDIAASLLGLIGNNIGQIAYLCALRYN--------IDRIVFIGSFLRNNQL--LMKVLSYATNFW--SKKA 262 (279)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CCeEEEECCcccCCHH--HHHHHHHHHhhc--CceE
Confidence 11111 2355667777666655544333333344 3689999997766554 366666655433 2444
Q ss_pred eC---CCCChHHHHHH
Q 019144 323 IR---PKVEPAVGAAL 335 (345)
Q Consensus 323 ~~---~~~a~~~GAa~ 335 (345)
+. ..+.+++||++
T Consensus 263 ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 263 LFLEHEGYSGAIGALL 278 (279)
T ss_pred EEECCcchHHHhhhcc
Confidence 44 35678888874
No 60
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=97.54 E-value=0.00053 Score=61.76 Aligned_cols=115 Identities=15% Similarity=0.035 Sum_probs=70.3
Q ss_pred ccEEEEEecCccceeeEEEcCccCCCCCCCCCCeeE-EEec-CCCCccccCHHHHHHHHHHHHHHHHHHcCC-Cccccce
Q 019144 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLA-RAAA-GCSNHNSVGEDAARETIEKVMADALLKSGS-NRSAVRA 97 (345)
Q Consensus 21 ~~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~-~~~~-~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~-~~~~i~~ 97 (345)
.+.+|+||+|||+.|++++.+.| .+.+.. +... .+.+......+++++.|.+.|.+++.+... ...+...
T Consensus 62 ~G~~LalDlGGTnlRv~~V~L~g-------~~~~~~~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~~~~~~l~ 134 (206)
T PF00349_consen 62 KGDFLALDLGGTNLRVALVELSG-------NGKVEIEQEKYKIPEELMNGSGEELFDFIADCIAEFLKEHNLESRDEKLP 134 (206)
T ss_dssp EEEEEEEEESSSSEEEEEEEEES-------SSEEEEEEEEEE--HHHHTSBHHHHHHHHHHHHHHHHHHTTTTSTTSEEE
T ss_pred CceEEEEeecCcEEEEEEEEEcC-------CCCceeeeccccCChHHhcCCcccHHHHHHHHHHHHHHHhcccccccccc
Confidence 45899999999999999999942 221211 1211 122222245688999999999999998865 2334445
Q ss_pred eEEeecCCCChh-----------------------HHHHHHHHHHhhCCC-CceEEEeCcHHHHHhccc
Q 019144 98 VCLAVSGVNHPT-----------------------DQQRILNWLRDIFPG-NVRLYVHNDALAALASGT 142 (345)
Q Consensus 98 Igig~pG~~~~~-----------------------~~~~l~~~L~~~~~~-~~pV~v~NDa~~a~~~~~ 142 (345)
+|+..+=|.... -...|.+.|+++--. -.++.|.||+.+.+++..
T Consensus 135 lGfTFSFP~~q~~~~~g~li~wtKgf~~~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~ 203 (206)
T PF00349_consen 135 LGFTFSFPVEQTSLNSGTLIRWTKGFDISGVVGKDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGA 203 (206)
T ss_dssp EEEEEESSEEESSTTEEEE----TT---BTGTTSBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHH
T ss_pred eEEEEEEEEEeccCCCeEEEEeeccccccCCCCCccchhHHHHHHHhcccCcceEEEEECCHHHhhhhh
Confidence 566555552111 012445555555321 136999999998877643
No 61
>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]. The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....
Probab=97.53 E-value=0.018 Score=56.71 Aligned_cols=76 Identities=24% Similarity=0.211 Sum_probs=54.6
Q ss_pred ChhhHHHHhhcCCC---hHHHhcchHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCc
Q 019144 220 SPDELIGWTYVDPS---WARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGV 296 (345)
Q Consensus 220 ~~~~l~~~~~~~~~---~~~~~~~~~~v~~~a~~gD~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl 296 (345)
+.+++.+.++++.- ...+....++|.+.+++||+.|+.+++-++..+++.|.++...|+ ...+.||+.||+
T Consensus 257 s~~e~~~~l~~~sGL~g~sG~s~D~r~i~~~~~~gd~~A~la~d~~~y~i~k~Ig~~~a~l~------G~vDaivfTGGi 330 (388)
T PF00871_consen 257 SADELERLLNKESGLLGLSGISNDMREIEARIEEGDERAKLALDAFAYQIAKYIGAYAAVLE------GGVDAIVFTGGI 330 (388)
T ss_dssp -HHHHHHHHHHSSHHHHHHSSSS-HHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHHHT------SS-SEEEEEHHH
T ss_pred CHHHHHHHHHhccCcEeccCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhc------cCCCEEEEcccc
Confidence 35566666654321 111123457788888999999999999999999999999999994 125899999999
Q ss_pred ccCcc
Q 019144 297 LEANR 301 (345)
Q Consensus 297 ~~~~~ 301 (345)
.+...
T Consensus 331 ge~~~ 335 (388)
T PF00871_consen 331 GENSA 335 (388)
T ss_dssp HHHTH
T ss_pred ccchH
Confidence 97654
No 62
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=97.33 E-value=0.17 Score=48.69 Aligned_cols=100 Identities=16% Similarity=0.149 Sum_probs=64.3
Q ss_pred EEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCC-CCccccCHH----HHHHHHHHHHHHHHHHcCCCccccceeE
Q 019144 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC-SNHNSVGED----AARETIEKVMADALLKSGSNRSAVRAVC 99 (345)
Q Consensus 25 lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~-~~~~~~~~~----~~~~~l~~~i~~~~~~~~~~~~~i~~Ig 99 (345)
||||-....+.+++++. +++++...+... ......-|+ .=.+.+...++++++++++++.+|.+|+
T Consensus 1 Lgiets~~~~s~al~~~---------~~~i~~~~~~~~~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~did~Ia 71 (322)
T TIGR03722 1 LGIEGTAHTFGVGIVDE---------DGEILANVSDTYVPEKGGIHPREAAEHHAEVAPKLIKEALEEAGVSLEDIDAVA 71 (322)
T ss_pred CEEeccccceEEEEEEC---------CCeEEEEEEeecccCcCCcChhHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEE
Confidence 57888888889999986 567776443211 111111222 2345677789999999999988999888
Q ss_pred Eee-cCCCCh-hHHHHHHHHHHhhCCCCceEEEeCcHH
Q 019144 100 LAV-SGVNHP-TDQQRILNWLRDIFPGNVRLYVHNDAL 135 (345)
Q Consensus 100 ig~-pG~~~~-~~~~~l~~~L~~~~~~~~pV~v~NDa~ 135 (345)
++. ||.... .-...+.+.|...++ .|+.--|.-.
T Consensus 72 vt~gPg~~~~l~vg~~~ak~la~~~~--~p~~~v~h~~ 107 (322)
T TIGR03722 72 FSQGPGLGPCLRVGATAARALALKLN--KPLVGVNHCV 107 (322)
T ss_pred EecCCchHHhHHHHHHHHHHHHHHhC--CCeechhhHH
Confidence 875 554321 123456778888887 7866555543
No 63
>PRK09604 UGMP family protein; Validated
Probab=97.26 E-value=0.18 Score=48.78 Aligned_cols=102 Identities=18% Similarity=0.181 Sum_probs=69.6
Q ss_pred EEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCC-c---c----ccCHHHHHHHHHHHHHHHHHHcCCCccc
Q 019144 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN-H---N----SVGEDAARETIEKVMADALLKSGSNRSA 94 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~-~---~----~~~~~~~~~~l~~~i~~~~~~~~~~~~~ 94 (345)
++||||-....+.++++|. +++++......... . . +.....=.+.+...+++++++++.++.+
T Consensus 2 ~iLgIdTS~~~~sval~~~---------~~~il~~~~~~~~~~~~~~~Gi~P~~a~~~H~~~l~~~i~~~L~~~~~~~~d 72 (332)
T PRK09604 2 LILGIETSCDETSVAVVDD---------GRGLLSNVVASQIDLHARYGGVVPELASRAHVENIVPLIEEALKEAGLTLED 72 (332)
T ss_pred eEEEEEccccceEEEEEEC---------CCcEEEEEEecchhcccccCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 6899999888899999986 55777665422110 0 0 0012334678888899999999999999
Q ss_pred cceeEEee-cCCCCh-hHHHHHHHHHHhhCCCCceEEEeCcHH
Q 019144 95 VRAVCLAV-SGVNHP-TDQQRILNWLRDIFPGNVRLYVHNDAL 135 (345)
Q Consensus 95 i~~Igig~-pG~~~~-~~~~~l~~~L~~~~~~~~pV~v~NDa~ 135 (345)
|.+|+++. ||.... .....+.+-|...++ .|+.--|--.
T Consensus 73 id~iavt~GPG~~tglrvg~~~Ak~La~~~~--ipl~~v~h~~ 113 (332)
T PRK09604 73 IDAIAVTAGPGLVGALLVGVSFAKALALALN--KPLIGVNHLE 113 (332)
T ss_pred CCEEEEecCCCcHHhHHHHHHHHHHHHHHhC--CCEEeecCHH
Confidence 99999886 665322 123456778888887 7765555533
No 64
>PLN02669 xylulokinase
Probab=97.26 E-value=0.00099 Score=68.80 Aligned_cols=71 Identities=15% Similarity=0.127 Sum_probs=56.3
Q ss_pred ccEEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCC----C-----ccccCHH----------HHHHHHHHHH
Q 019144 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS----N-----HNSVGED----------AARETIEKVM 81 (345)
Q Consensus 21 ~~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~----~-----~~~~~~~----------~~~~~l~~~i 81 (345)
..|+||+|+|+|++|++++|. +|++++....... . ..+++++ ..++.+..++
T Consensus 7 ~~~~LGiD~GT~s~Ka~l~d~---------~g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l 77 (556)
T PLN02669 7 DSLFLGFDSSTQSLKATVLDS---------NLRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLL 77 (556)
T ss_pred CCeEEEEecccCCeEEEEEcC---------CCCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHH
Confidence 459999999999999999999 8999998766432 1 1235666 5669999999
Q ss_pred HHHHHHcCCCccccceeEEe
Q 019144 82 ADALLKSGSNRSAVRAVCLA 101 (345)
Q Consensus 82 ~~~~~~~~~~~~~i~~Igig 101 (345)
+++. +.+.+..+|.+|+++
T Consensus 78 ~~l~-~~~~~~~~I~aIs~s 96 (556)
T PLN02669 78 QKLA-KEKFPFHKVVAISGS 96 (556)
T ss_pred HHHH-HcCCChhhEEEEEec
Confidence 9987 567677789998887
No 65
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=97.22 E-value=0.29 Score=50.26 Aligned_cols=101 Identities=19% Similarity=0.177 Sum_probs=68.3
Q ss_pred EEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCC-CccccCHHH----HHHHHHHHHHHHHHHcCCCccccce
Q 019144 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS-NHNSVGEDA----ARETIEKVMADALLKSGSNRSAVRA 97 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~-~~~~~~~~~----~~~~l~~~i~~~~~~~~~~~~~i~~ 97 (345)
++||||-....+.+++++. +++++........ .....-|++ =.+.+..++++++++++++..+|.+
T Consensus 2 ~il~iets~~~~s~a~~~~---------~~~~~~~~~~~~~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~~~~~~~~id~ 72 (535)
T PRK09605 2 IVLGIEGTAWKTSAGIVDS---------DGDVLFNESDPYKPPSGGIHPREAAEHHAEAIPKVIKEALEEAGLKPEDIDL 72 (535)
T ss_pred EEEEEEccccceEEEEEeC---------CCcEEEEEEeeccCCcCCCChHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCE
Confidence 7999999999999999996 5677776643211 111122333 3566778889999999998889988
Q ss_pred eEEeecCCCChh---HHHHHHHHHHhhCCCCceEEEeCcHH
Q 019144 98 VCLAVSGVNHPT---DQQRILNWLRDIFPGNVRLYVHNDAL 135 (345)
Q Consensus 98 Igig~pG~~~~~---~~~~l~~~L~~~~~~~~pV~v~NDa~ 135 (345)
|+++. ||-... -+..+.+-|...++ .|+.-.|.-.
T Consensus 73 iav~~-gPg~~~~l~vg~~~ak~la~~~~--~~~~~v~h~~ 110 (535)
T PRK09605 73 VAFSQ-GPGLGPCLRVVATAARALALSLD--VPLIGVNHCV 110 (535)
T ss_pred EEECC-CCCcHhhHHHHHHHHHHHHHHhC--CCeecccHHH
Confidence 88763 332222 23466788888887 7865555443
No 66
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=97.14 E-value=0.19 Score=47.97 Aligned_cols=131 Identities=15% Similarity=0.103 Sum_probs=81.2
Q ss_pred EEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCc--------cccCHHHHHHHHHHHHHHHHHHcCCCccccc
Q 019144 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNH--------NSVGEDAARETIEKVMADALLKSGSNRSAVR 96 (345)
Q Consensus 25 lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~--------~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~ 96 (345)
|+||-....+.++++|. +++++.......... .+.....=.+.|..++++++++++.++.+|.
T Consensus 1 LaidTs~~~~sval~~~---------~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~~~~~~~did 71 (305)
T TIGR00329 1 LGIETSCDDTGVAIVDE---------EGNVLANIKISQIPLHAKYGGVVPEEASRHHAENIPPLLERALIESNVDKSEID 71 (305)
T ss_pred CEEecCccceEEEEEEC---------CCcEEEEEEecccccccccCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHCC
Confidence 57898999999999985 577887654321100 0012233467788889999999999999999
Q ss_pred eeEEee-cCCCCh-hHHHHHHHHHHhhCCCCceEEEeCcHHHHHhcccC--C--CCCeEEEEeCccceeeeecCCC
Q 019144 97 AVCLAV-SGVNHP-TDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM--G--KLHGCVLIAGTGTIAYGFTEDG 166 (345)
Q Consensus 97 ~Igig~-pG~~~~-~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~~~--g--~~~~v~v~~GTG~~g~gi~~dG 166 (345)
+|+++. ||.... .-.....+.|...++ .|+.--|.-.+-+++... + ....+++.+..|..-.....++
T Consensus 72 ~iav~~GPG~~tglrvg~~~Ak~la~~~~--~p~~~v~hl~~ha~~a~~~s~~~~~~~l~l~vsGG~t~l~~~~~~ 145 (305)
T TIGR00329 72 LIAYTQGPGLGGSLRVGATFARSLALSLD--KPLIGVNHLLGHIYAPRLDTNILQFPFVSLLVSGGHTQIIAVKGI 145 (305)
T ss_pred EEEEecCCCchhhHHHHHHHHHHHHHHhC--CCEeecccHHHHHHHhhhhcCCCCCCcEEEEEcCCceEEEEEeCC
Confidence 998876 664322 123456778888887 787777776644333221 2 3445554443354333333433
No 67
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=97.14 E-value=0.015 Score=55.92 Aligned_cols=82 Identities=15% Similarity=0.216 Sum_probs=53.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCcee
Q 019144 243 VVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVP 322 (345)
Q Consensus 243 ~v~~~a~~gD~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~i 322 (345)
++.+.+. .++.+ .++.....+.+.++.+.... ++|+.|+|+|.+.... .+ .+.+++.+.+.++ +++
T Consensus 227 e~~~~~~-e~~~~--a~ea~~E~i~k~V~~l~~~~-------~~~~~IilSGr~~~~~-~~--~~~l~~~l~~~~~-~~v 292 (343)
T PF07318_consen 227 EFAKRLK-EDEKC--AWEAMIESIVKAVASLLASV-------PDPDEIILSGRFSRIP-EF--RKKLEDRLEDYFP-VKV 292 (343)
T ss_pred HHHHhhh-cchhH--HHHHHHHHHHHHHHHHhccc-------CCCCEEEEeccccccH-HH--HHHHHHHHHhhcc-cce
Confidence 3444433 35554 67777777888877766555 2367899999998653 33 7788888887765 222
Q ss_pred eC--C----CCChHHHHHHHHH
Q 019144 323 IR--P----KVEPAVGAALLAW 338 (345)
Q Consensus 323 ~~--~----~~a~~~GAa~la~ 338 (345)
.. + -..++.|||.+|-
T Consensus 293 ~~l~~~~~~aKeaA~GaAiIA~ 314 (343)
T PF07318_consen 293 RKLEGLARKAKEAAQGAAIIAN 314 (343)
T ss_pred eecccccccchhhhhhHHHHhh
Confidence 21 1 2468899998874
No 68
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=96.94 E-value=0.14 Score=49.92 Aligned_cols=95 Identities=16% Similarity=0.088 Sum_probs=66.7
Q ss_pred HHHHHHHcCCCChhhHHHHhhcCC---ChHHHhcchHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 019144 209 TSNILSTLELSSPDELIGWTYVDP---SWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGK 285 (345)
Q Consensus 209 ~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~v~~~a~~gD~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~ 285 (345)
...+.+..+ -+.+++.+.++... -.+.+.+..++|.+++.+|++ |+-.++-+...+++.|......++-
T Consensus 248 i~~l~~~~~-~s~~~i~~~LNkkSGllGlSg~ssD~R~l~~~~~~g~~-A~lA~~~f~~Ri~kyIg~y~a~L~g------ 319 (396)
T COG0282 248 ILYLMEQEG-MSAEEIDTLLNKKSGLLGLSGLSSDMRDLEEAAAEGNE-AKLALDMFVYRIAKYIGSYAAALGG------ 319 (396)
T ss_pred HHHHHHhcC-CCHHHHHHHHhhhccccccccccchHHHHHHHhccCch-HHHHHHHHHHHHHHHHHHHHHHhCC------
Confidence 334444444 24566666665322 111223346788888899977 9999999999999999999999984
Q ss_pred CCccEEEEcCcccCcccccchHHHHHHHH
Q 019144 286 HSFPLVMVGGVLEANRRWDIGREVVKCIL 314 (345)
Q Consensus 286 ~p~~IVlgGgl~~~~~~~~l~~~~~~~l~ 314 (345)
.+.||+.||+.++.... ++.+-+.|.
T Consensus 320 -lDaiVFTaGIGENs~~i--R~~v~~~L~ 345 (396)
T COG0282 320 -LDALVFTAGIGENSALV--RELVCEGLA 345 (396)
T ss_pred -CCEEEEeCccccCcHHH--HHHHHhhhh
Confidence 68999999999987653 666766664
No 69
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=96.82 E-value=0.0041 Score=54.61 Aligned_cols=65 Identities=25% Similarity=0.250 Sum_probs=51.4
Q ss_pred EEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEeecC
Q 019144 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (345)
Q Consensus 25 lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~pG 104 (345)
||||+|||+|.++++|. +..++...+.+++ ++....-+.+.+++++.+.+.++++|..|.+|..-
T Consensus 2 igIDvGGT~TD~v~~d~---------~~~~~~~~K~~Tt------~~d~~~gi~~al~~l~~~~~~~~~~i~~v~~gTT~ 66 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDE---------DTGVVATAKVPTT------PDDPAEGILEALDALLEESGIDPSDIDRVRHGTTV 66 (176)
T ss_pred eeEecCCCcEEEEEEeC---------CCCEEEEEEeCCC------CcCHHHHHHHHHHhhhcccCCChhhCcEEEeccHH
Confidence 79999999999999998 5577788777654 23456777888888888888777888888887643
No 70
>PRK12440 acetate kinase; Reviewed
Probab=96.73 E-value=0.025 Score=55.58 Aligned_cols=141 Identities=16% Similarity=0.166 Sum_probs=89.6
Q ss_pred CeEEEEeCccceeeeecCCCCeEE-eccCCCCcCCcCcHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCCCChhhHH
Q 019144 147 HGCVLIAGTGTIAYGFTEDGRDAR-AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELI 225 (345)
Q Consensus 147 ~~v~v~~GTG~~g~gi~~dG~~~~-~Gg~G~~~gd~G~a~~iG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 225 (345)
+.|+.-+|.|..-+++ .||+.+- .-|++.+-|=.- + ...|..++. +...+.+. + -+.+++.
T Consensus 202 ~~Iv~HLG~G~Si~Ai-~~GksvDtsmG~tPl~GL~M-g-------------tRsG~idp~-vv~~l~~~-~-~s~~e~~ 263 (397)
T PRK12440 202 SFISVHLGNGASVCAI-KNGQSVDTSMGFTPLSGLMM-G-------------TRCGDLDPG-IIEFLLKK-G-WSQEKVF 263 (397)
T ss_pred CEEEEEeCCCcEeeee-eCCEEEEcCCCCCCCCCCCC-C-------------CcCCCCCHH-HHHHHHHc-C-CCHHHHH
Confidence 5788889999866555 8899874 334444332100 0 011111111 22222222 2 2456666
Q ss_pred HHhhcCC---ChHHHhcchHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCccc
Q 019144 226 GWTYVDP---SWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRR 302 (345)
Q Consensus 226 ~~~~~~~---~~~~~~~~~~~v~~~a~~gD~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~ 302 (345)
+.++++. ..+.+....++|.+++++||+.|+-+++-++..+++.|.++...++- .+.||+.||+.++...
T Consensus 264 ~~Ln~~SGLlg~sG~s~D~R~l~~~~~~gd~~A~lA~d~f~yri~k~Ig~~~a~l~g-------vDaiVFTgGIGen~~~ 336 (397)
T PRK12440 264 NSLNKKSGFLGVSGLTSDARGILEAMEEGHEGATLAFEVFTYRVAKYIASYLAALDS-------LDGIIFTGGIGENSLP 336 (397)
T ss_pred HHHhccccceEecCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CCEEEECCccccCcHH
Confidence 6665432 11111223567777788999999999999999999999999999973 6899999999988654
Q ss_pred ccchHHHHHHHH
Q 019144 303 WDIGREVVKCIL 314 (345)
Q Consensus 303 ~~l~~~~~~~l~ 314 (345)
+ ++.+.+.+.
T Consensus 337 v--r~~i~~~l~ 346 (397)
T PRK12440 337 I--RREILKNLK 346 (397)
T ss_pred H--HHHHHhhhh
Confidence 3 777777775
No 71
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=96.62 E-value=0.0065 Score=56.09 Aligned_cols=85 Identities=13% Similarity=0.193 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCC----ceeeCCCCC
Q 019144 253 EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPG----AVPIRPKVE 328 (345)
Q Consensus 253 ~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~----~~i~~~~~a 328 (345)
..|..|.+++++..|.+++.+++.+......+..+-.|-+.|+++..++.| .+.+++.+.+..+. +++...++.
T Consensus 152 ~I~~aV~~RAA~L~Aa~iaail~~~~~~~~~~~~~v~VavDGSv~~~~p~f--~~~l~~~l~~L~~~~~~~v~~~~~~dg 229 (243)
T PF03727_consen 152 RICEAVSTRAARLVAAAIAAILNKIRENKGRPRREVTVAVDGSVYEKYPNF--RERLQEALDELLPEEGCKVEFVLSEDG 229 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTCSSEEEEEEEESHHHHHSTTH--HHHHHHHHHHHSTT-CEEEEEEE-SST
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhccccccCCceEEEEeCcceeeCHHH--HHHHHHHHHHhcccccceEEEEEecCc
Confidence 567889999999999999999999642111222345799999999998887 88999999988643 455567899
Q ss_pred hHHHHHHHHHH
Q 019144 329 PAVGAALLAWN 339 (345)
Q Consensus 329 ~~~GAa~la~~ 339 (345)
+.+|||..|.-
T Consensus 230 sg~GAAi~AA~ 240 (243)
T PF03727_consen 230 SGVGAAIAAAV 240 (243)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 99999998864
No 72
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=96.59 E-value=1.3 Score=46.90 Aligned_cols=90 Identities=13% Similarity=-0.020 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHHHHHH-cCCCccccceeEEeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhcc-cC--C
Q 019144 69 GEDAARETIEKVMADALLK-SGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASG-TM--G 144 (345)
Q Consensus 69 ~~~~~~~~l~~~i~~~~~~-~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~-~~--g 144 (345)
+|+++...+.+.+.+..++ .+ ..+..+.|++|-..+...+..+++.-+. .++ ..+.+-|+..+|+++- .. .
T Consensus 136 speeisa~iL~~Lk~~Ae~~lg---~~v~~aVITVPayF~~~qR~at~~Aa~~-AGl-~v~rlInEPtAAAlayg~~~~~ 210 (657)
T PTZ00186 136 SPSQIGAFVLEKMKETAENFLG---HKVSNAVVTCPAYFNDAQRQATKDAGTI-AGL-NVIRVVNEPTAAALAYGMDKTK 210 (657)
T ss_pred cHHHHHHHHHHHHHHHHHHHhC---CccceEEEEECCCCChHHHHHHHHHHHH-cCC-CeEEEEcChHHHHHHHhccCCC
Confidence 4555555554444333332 22 2467788999998776555455544333 232 4678999999887742 11 1
Q ss_pred CCCeEEEEeCccceeeeec
Q 019144 145 KLHGCVLIAGTGTIAYGFT 163 (345)
Q Consensus 145 ~~~~v~v~~GTG~~g~gi~ 163 (345)
....+++=+|.|.--..++
T Consensus 211 ~~~vlV~DlGGGT~DvSil 229 (657)
T PTZ00186 211 DSLIAVYDLGGGTFDISVL 229 (657)
T ss_pred CCEEEEEECCCCeEEEEEE
Confidence 2334555577776444453
No 73
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=96.58 E-value=0.0089 Score=60.39 Aligned_cols=76 Identities=21% Similarity=0.240 Sum_probs=57.9
Q ss_pred ccEEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecC------CCCccccCHHHHHHHHHHHHHHHHHHcCCCccc
Q 019144 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG------CSNHNSVGEDAARETIEKVMADALLKSGSNRSA 94 (345)
Q Consensus 21 ~~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~------~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~ 94 (345)
...++|||+|+|++|++++|-. +++++.....+ -..+.+++|.++++.+.++|+.+.++....+..
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~--------~~e~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~ 76 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAK--------NGELLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIK 76 (516)
T ss_pred cceEEEEEcCCCceEEEEEecC--------CCccceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3589999999999999999942 67777765443 223456899999999999999999998766555
Q ss_pred cce-eEEeecC
Q 019144 95 VRA-VCLAVSG 104 (345)
Q Consensus 95 i~~-Igig~pG 104 (345)
+.+ +++++.+
T Consensus 77 ~~~~~~igv~~ 87 (516)
T KOG2517|consen 77 VVGATCIGVVN 87 (516)
T ss_pred ccccEEEEEEe
Confidence 544 4555555
No 74
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=96.55 E-value=0.039 Score=54.36 Aligned_cols=143 Identities=16% Similarity=0.194 Sum_probs=87.7
Q ss_pred CeEEEEeCccceeeeecCCCCeEE-eccCCCCcCCcCcHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCCCChhhHH
Q 019144 147 HGCVLIAGTGTIAYGFTEDGRDAR-AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELI 225 (345)
Q Consensus 147 ~~v~v~~GTG~~g~gi~~dG~~~~-~Gg~G~~~gd~G~a~~iG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 225 (345)
+.|+.-+|.|..-+++ .||+.+- .-|+..+ +|-. .....|..++..+. .+....+ -+.+++.
T Consensus 207 ~~Iv~HLG~G~Si~Ai-~~GksvDTsmG~tpL---eGl~-----------mgtRsG~lDp~~~~-~l~~~~~-~s~~e~~ 269 (404)
T TIGR00016 207 NLIVCHLGNGASVCAV-KNGKSIDTSMGFTPL---EGLM-----------MGTRSGDIDPAIIS-YLAETLG-MSADDIE 269 (404)
T ss_pred CEEEEEeCCCceeeee-eCCEEEEeCCCCCCc---cCCC-----------CCCCCCCCChHHHH-HHHHhcC-CCHHHHH
Confidence 5788889999865545 8898874 2222211 1100 00011111111111 1222222 1456666
Q ss_pred HHhhcCC---ChHHHhcchHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCccc
Q 019144 226 GWTYVDP---SWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRR 302 (345)
Q Consensus 226 ~~~~~~~---~~~~~~~~~~~v~~~a~~gD~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~ 302 (345)
+.++++. ...-+....++|.+++++||+.|+.+++-++..+++.|..+...++- ..+.||+.||+.++...
T Consensus 270 ~~Ln~~SGLlg~sG~s~D~Rel~~~~~~gd~~A~lA~~~f~yri~k~Iga~~a~L~G------~vDaiVFTGGIGEns~~ 343 (404)
T TIGR00016 270 NTLNKKSGLLGISGLSSDLRDIEDAYAEGNEQAQLAIKMYVHRIAKYIGSYIASLEG------NLDAIVFTGGIGENAAT 343 (404)
T ss_pred HHHhhcccceEecCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC------CCCEEEEcCccccCCHH
Confidence 6665432 11111233567777778999999999999999999999999999981 14899999999987665
Q ss_pred ccchHHHHHHHH
Q 019144 303 WDIGREVVKCIL 314 (345)
Q Consensus 303 ~~l~~~~~~~l~ 314 (345)
+ ++.+.+.+.
T Consensus 344 v--r~~i~~~l~ 353 (404)
T TIGR00016 344 V--RELVLEALE 353 (404)
T ss_pred H--HHHHHhhhh
Confidence 4 777777764
No 75
>PRK14878 UGMP family protein; Provisional
Probab=96.41 E-value=0.98 Score=43.46 Aligned_cols=99 Identities=16% Similarity=0.149 Sum_probs=63.4
Q ss_pred EEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCC-CccccCHHH----HHHHHHHHHHHHHHHcCCCccccceeE
Q 019144 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS-NHNSVGEDA----ARETIEKVMADALLKSGSNRSAVRAVC 99 (345)
Q Consensus 25 lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~-~~~~~~~~~----~~~~l~~~i~~~~~~~~~~~~~i~~Ig 99 (345)
||||-....+.+++++. ++++...+.... .....-|++ =.+.+...++++++++++++.+|.+|.
T Consensus 1 l~iets~~~~s~al~~~----------~~i~~~~~~~~~~~~gg~~p~~~~~~h~~~l~~~i~~~l~~a~~~~~did~Ia 70 (323)
T PRK14878 1 LGIESTAHTLGVGIVKE----------DKVLANVRDTYVPEKGGIHPREAAQHHAEVAPELLRKALEKAGISIEDIDAVA 70 (323)
T ss_pred CEEecCCcccEEEEEEC----------CEEEEEEEEecccCcCCcCccHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEE
Confidence 57888888888999974 446665543111 010112222 245577888999999999999999888
Q ss_pred Eee-cCCCCh-hHHHHHHHHHHhhCCCCceEEEeCcHH
Q 019144 100 LAV-SGVNHP-TDQQRILNWLRDIFPGNVRLYVHNDAL 135 (345)
Q Consensus 100 ig~-pG~~~~-~~~~~l~~~L~~~~~~~~pV~v~NDa~ 135 (345)
++. ||.... .-+..+.+.|...++ .|+.-.|.-.
T Consensus 71 vt~gPG~~~~lrvg~~~Ak~la~~~~--~p~~~v~h~~ 106 (323)
T PRK14878 71 VSQGPGLGPALRVGATAARALALKYN--KPLVPVNHCI 106 (323)
T ss_pred EecCCCcccchHHHHHHHHHHHHHhC--CCccccchHH
Confidence 876 664321 223456778888887 7865555543
No 76
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=96.37 E-value=0.06 Score=53.21 Aligned_cols=143 Identities=18% Similarity=0.182 Sum_probs=87.1
Q ss_pred CeEEEEeCccceeeeecCCCCeEE-eccCCCCcCCcCcHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCCCChhhHH
Q 019144 147 HGCVLIAGTGTIAYGFTEDGRDAR-AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELI 225 (345)
Q Consensus 147 ~~v~v~~GTG~~g~gi~~dG~~~~-~Gg~G~~~gd~G~a~~iG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 225 (345)
+.|+.-+|.|+.-+++ .+|+.+- .-|+-.+ +|-. .....|..++..+... ....+ -+.+++.
T Consensus 203 ~lIvaHLG~GaSi~Ai-~~GrsvDtsmG~tpl---eGl~-----------m~tRsG~ldp~~v~~l-~~~~~-~s~~el~ 265 (402)
T PRK00180 203 NLITCHLGNGASIAAI-KNGKSVDTSMGFTPL---EGLV-----------MGTRSGDIDPAIIPYL-MEKLG-MSVDEID 265 (402)
T ss_pred CEEEEEeCCCceeeee-eCCEEEEeCCCCCcc---cCCC-----------CCCCCCCCChHHHHHH-HHhcC-CCHHHHH
Confidence 6788889999866555 7898864 2122110 1100 0001111112211111 11112 1456777
Q ss_pred HHhhcCC---ChHHHhcchHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCccc
Q 019144 226 GWTYVDP---SWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRR 302 (345)
Q Consensus 226 ~~~~~~~---~~~~~~~~~~~v~~~a~~gD~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~ 302 (345)
+.++++. ....+....++|.+.+.+||+.|+.+++-++..+++.|.++...|. ..-+.||+.||+.++...
T Consensus 266 ~~L~~~sGLlg~sG~s~D~Rel~~~~~~gd~~A~lA~d~f~yri~k~Iga~~a~L~------g~vDaiVfTGGIgE~s~~ 339 (402)
T PRK00180 266 NLLNKKSGLLGLSGVSSDMRDIEAAAEEGDERAKLALDVFVYRLAKYIGSYAAALN------GRLDAIVFTAGIGENSAL 339 (402)
T ss_pred HHHhccccceEecCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCCEEEEcCccccCCHH
Confidence 7776532 1111122356777777889999999999999999999999999993 125789999999987665
Q ss_pred ccchHHHHHHHH
Q 019144 303 WDIGREVVKCIL 314 (345)
Q Consensus 303 ~~l~~~~~~~l~ 314 (345)
+ ++.+.+.+.
T Consensus 340 l--r~~I~~~l~ 349 (402)
T PRK00180 340 V--REKVLEGLE 349 (402)
T ss_pred H--HHHHHhhhh
Confidence 3 777777764
No 77
>PRK13320 pantothenate kinase; Reviewed
Probab=96.23 E-value=0.19 Score=46.44 Aligned_cols=118 Identities=19% Similarity=0.126 Sum_probs=68.0
Q ss_pred EEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEee
Q 019144 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~ 102 (345)
++|.+|+|-|++|+++++. ++++...+.+ .++....+. +++++.+ ++..+.++.
T Consensus 3 M~L~iDiGNT~ik~~~~~~----------~~~~~~~~~~--------~~~~~~~l~----~~~~~~~----~i~~i~vsS 56 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVFEG----------DELLEVFVVS--------TEGVEESLE----KLLAKYP----AIRDAIVSS 56 (244)
T ss_pred eEEEEEeCCCcEEEEEEEC----------CEEEEEEEEc--------cHHHHHHHH----HHHHHCC----CCCEEEEEe
Confidence 7999999999999999985 4665544432 233333333 3444332 467777877
Q ss_pred cCCCChhHHHHHHHHHHhhCC-------CCceEEEeCc--------HHHHHhccc--CCCCCeEEEEeCccceeeeecCC
Q 019144 103 SGVNHPTDQQRILNWLRDIFP-------GNVRLYVHND--------ALAALASGT--MGKLHGCVLIAGTGTIAYGFTED 165 (345)
Q Consensus 103 pG~~~~~~~~~l~~~L~~~~~-------~~~pV~v~ND--------a~~a~~~~~--~g~~~~v~v~~GTG~~g~gi~~d 165 (345)
..+... ..+.+.+++.++ ...++.+..+ --+++++++ ...++.+++-+||-+.--.+..|
T Consensus 57 Vvp~~~---~~~~~~~~~~~~~~~v~~~~~~gi~~~Y~~p~~lG~DR~~~~~aa~~~~~~~~~lVID~GTA~Tid~v~~~ 133 (244)
T PRK13320 57 VVPLAE---EAFSALLKLLFAVLELDSETPLPFRNDYDTPETLGADRLALCAGARYLFPGKNVLAIDAGTAITYDVLDSE 133 (244)
T ss_pred cccchH---HHHHHHHHHhCCcEEECCCCCCCCceeccChhhcchhHHHHHHHHHHhcCCCCEEEEEcCCceEEEEEcCC
Confidence 776542 345555555442 0023333333 113333332 22347889999999865555567
Q ss_pred CCeE
Q 019144 166 GRDA 169 (345)
Q Consensus 166 G~~~ 169 (345)
|+..
T Consensus 134 g~~~ 137 (244)
T PRK13320 134 GVYL 137 (244)
T ss_pred CcEE
Confidence 7665
No 78
>PRK07157 acetate kinase; Provisional
Probab=96.14 E-value=0.085 Score=51.96 Aligned_cols=87 Identities=18% Similarity=0.158 Sum_probs=64.0
Q ss_pred ChhhHHHHhhcCC---ChHHHhcchHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCc
Q 019144 220 SPDELIGWTYVDP---SWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGV 296 (345)
Q Consensus 220 ~~~~l~~~~~~~~---~~~~~~~~~~~v~~~a~~gD~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl 296 (345)
+.+++.+.++++. ..+.+....++|.+++++||+.|+-+++-++..+++.|.++...++ .+.+.||+.||+
T Consensus 257 s~~e~~~~Ln~~SGLlg~sG~s~D~R~l~~~~~~gd~~A~lA~d~f~yri~k~Ig~~~a~L~------G~vDaiVFTgGI 330 (400)
T PRK07157 257 SISEFTDLLNKKSGLLGVSGISSDLRDVIKAAESGNKRAKFALDLYAQKIVDYLANYINKIG------KKIDAIVFTAGV 330 (400)
T ss_pred CHHHHHHHHhhccCceEecCCCCcHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhC------CCCCEEEECCcc
Confidence 4566666665432 1111123456777778899999999999999999999999999998 114899999999
Q ss_pred ccCcccccchHHHHHHHH
Q 019144 297 LEANRRWDIGREVVKCIL 314 (345)
Q Consensus 297 ~~~~~~~~l~~~~~~~l~ 314 (345)
.++...+ ++.+.+.+.
T Consensus 331 Gen~~~v--r~~i~~~l~ 346 (400)
T PRK07157 331 GENSAFV--RELVINKIN 346 (400)
T ss_pred ccCcHHH--HHHHHhhcc
Confidence 9886543 666766664
No 79
>PRK12379 propionate/acetate kinase; Provisional
Probab=96.12 E-value=0.087 Score=51.85 Aligned_cols=86 Identities=15% Similarity=0.155 Sum_probs=63.8
Q ss_pred ChhhHHHHhhcCC---ChHHHhcchHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCc
Q 019144 220 SPDELIGWTYVDP---SWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGV 296 (345)
Q Consensus 220 ~~~~l~~~~~~~~---~~~~~~~~~~~v~~~a~~gD~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl 296 (345)
+.+++.+.++++. ....+....++|.+++++||+.|+.+++-++..+++.|.+....++- .+.||+.||+
T Consensus 255 s~~el~~~Lnk~SGLlg~sG~s~D~R~v~~~~~~gd~~A~lA~d~f~yri~k~IGa~~a~L~~-------vDaIVFTGGI 327 (396)
T PRK12379 255 TLGDLERVVNKESGLLGISGLSSDLRVLEKAWHEGHERAQLAIKTFVHRIARHIAGHAASLHR-------LDGIIFTGGI 327 (396)
T ss_pred CHHHHHHHHhccccceEecCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CCEEEECCcc
Confidence 4566666665432 11111223567777888999999999999999999999999999973 6899999999
Q ss_pred ccCcccccchHHHHHHHH
Q 019144 297 LEANRRWDIGREVVKCIL 314 (345)
Q Consensus 297 ~~~~~~~~l~~~~~~~l~ 314 (345)
.+..... ++.+-+.|.
T Consensus 328 Gen~~~v--R~~i~~~L~ 343 (396)
T PRK12379 328 GENSSLI--RRLVMEHLA 343 (396)
T ss_pred ccCcHHH--HHHHHhhhh
Confidence 9886543 666666664
No 80
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=96.03 E-value=2.1 Score=44.78 Aligned_cols=91 Identities=11% Similarity=-0.032 Sum_probs=54.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHcCCCccccceeEEeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhcc-c-C-C
Q 019144 68 VGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASG-T-M-G 144 (345)
Q Consensus 68 ~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~-~-~-g 144 (345)
.+|+++...+.+.+.+..++.- ...+..+.|++|-..+...+..+++..+.. ++ ..+.+-|+..+|+++- . . .
T Consensus 116 ~speei~a~iL~~lk~~ae~~l--g~~v~~aVITVPa~f~~~qR~a~~~Aa~~A-Gl-~v~~li~EPtAAAlay~~~~~~ 191 (595)
T PRK01433 116 LRIPEIAAEIFIYLKNQAEEQL--KTNITKAVITVPAHFNDAARGEVMLAAKIA-GF-EVLRLIAEPTAAAYAYGLNKNQ 191 (595)
T ss_pred EcHHHHHHHHHHHHHHHHHHHh--CCCcceEEEEECCCCCHHHHHHHHHHHHHc-CC-CEEEEecCcHHHHHHHhcccCC
Confidence 3566766666655555444321 135778899999998766655565554433 32 4678999999887741 1 1 1
Q ss_pred CCCeEEEEeCccceeeee
Q 019144 145 KLHGCVLIAGTGTIAYGF 162 (345)
Q Consensus 145 ~~~~v~v~~GTG~~g~gi 162 (345)
....+++=.|.|..-..+
T Consensus 192 ~~~vlV~DlGGGT~DvSi 209 (595)
T PRK01433 192 KGCYLVYDLGGGTFDVSI 209 (595)
T ss_pred CCEEEEEECCCCcEEEEE
Confidence 223455557767544444
No 81
>PRK12397 propionate kinase; Reviewed
Probab=95.90 E-value=0.11 Score=51.24 Aligned_cols=86 Identities=17% Similarity=0.186 Sum_probs=63.8
Q ss_pred ChhhHHHHhhcCC---ChHHHhcchHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCc
Q 019144 220 SPDELIGWTYVDP---SWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGV 296 (345)
Q Consensus 220 ~~~~l~~~~~~~~---~~~~~~~~~~~v~~~a~~gD~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl 296 (345)
+.+++.+.++++. ..+.+....++|.+++.+||+.|+.+++-++..+.+.|..+...+.- -+.||+.||+
T Consensus 259 s~~e~~~~Lnk~SGLlg~sG~s~D~R~l~~~~~~gd~~A~lA~d~f~yri~k~IGa~~a~lgg-------vDaiVFTGGI 331 (404)
T PRK12397 259 TPQQLNQLLNNESGLLGVSGVSSDYRDVEQAANTGNRQAKLALTLFAERIRATIGSYIMQMGG-------LDALVFTGGI 331 (404)
T ss_pred CHHHHHHHHhccccceEecCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CCEEEECCch
Confidence 4556666665432 11111233567777788999999999999999999999999999873 5799999999
Q ss_pred ccCcccccchHHHHHHHH
Q 019144 297 LEANRRWDIGREVVKCIL 314 (345)
Q Consensus 297 ~~~~~~~~l~~~~~~~l~ 314 (345)
.++.... ++.+-+.|.
T Consensus 332 GEns~~v--R~~ic~~L~ 347 (404)
T PRK12397 332 GENSARA--RSAVCHNLQ 347 (404)
T ss_pred hhCCHHH--HHHHHhhhh
Confidence 9987653 777766664
No 82
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=95.88 E-value=0.94 Score=47.55 Aligned_cols=89 Identities=18% Similarity=0.102 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHHHHHH-cCCCccccceeEEeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhc-cc-CCC
Q 019144 69 GEDAARETIEKVMADALLK-SGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALAS-GT-MGK 145 (345)
Q Consensus 69 ~~~~~~~~l~~~i~~~~~~-~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~-~~-~g~ 145 (345)
.|+++...+.+.+.+..++ .+ ..+..+.|++|-..+......+++..+. .++ ..+.+-|+..+|+++ .. ...
T Consensus 125 ~p~ei~a~iL~~lk~~ae~~lg---~~v~~~VITVPa~f~~~qR~a~~~Aa~~-AGl-~v~~li~EPtAAAlay~~~~~~ 199 (616)
T PRK05183 125 SPVEVSAEILKALRQRAEETLG---GELDGAVITVPAYFDDAQRQATKDAARL-AGL-NVLRLLNEPTAAAIAYGLDSGQ 199 (616)
T ss_pred cHHHHHHHHHHHHHHHHHHHhC---CCcceEEEEECCCCCHHHHHHHHHHHHH-cCC-CeEEEecchHHHHHHhhcccCC
Confidence 3555555444444443332 22 2467889999999876665556555443 342 467899999988764 11 112
Q ss_pred -CCeEEEEeCccceeeee
Q 019144 146 -LHGCVLIAGTGTIAYGF 162 (345)
Q Consensus 146 -~~~v~v~~GTG~~g~gi 162 (345)
...+++=+|.|..-..+
T Consensus 200 ~~~vlV~DlGGGT~DvSv 217 (616)
T PRK05183 200 EGVIAVYDLGGGTFDISI 217 (616)
T ss_pred CCEEEEEECCCCeEEEEE
Confidence 23444556666543334
No 83
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=95.70 E-value=2.2 Score=41.43 Aligned_cols=101 Identities=17% Similarity=0.203 Sum_probs=71.3
Q ss_pred EEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccC----H----HHHHHHHHHHHHHHHHHcCCCccc
Q 019144 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVG----E----DAARETIEKVMADALLKSGSNRSA 94 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~----~----~~~~~~l~~~i~~~~~~~~~~~~~ 94 (345)
.+||||-..+.+.++++|. +++++......-... .+ | ..=.+.|..++++++++++....+
T Consensus 2 ~iLgIETScd~tsvAl~~~---------~~~il~~~~~sq~~~--~G~GvvP~~a~r~H~~~l~~~i~~~l~~a~~~~~d 70 (345)
T PTZ00340 2 LALGIEGSANKLGVGIVTS---------DGEILSNVRETYITP--PGTGFLPRETAQHHREHILSLVKEALEEAKITPSD 70 (345)
T ss_pred eEEEEEccchhhEEEEEEC---------CCcEEEEEEeecccc--CCCCcCchHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 6899999999999999997 677777654211110 11 2 223667788899999999999989
Q ss_pred cceeEEee-cCCCC-hhHHHHHHHHHHhhCCCCceEEEeCcHHH
Q 019144 95 VRAVCLAV-SGVNH-PTDQQRILNWLRDIFPGNVRLYVHNDALA 136 (345)
Q Consensus 95 i~~Igig~-pG~~~-~~~~~~l~~~L~~~~~~~~pV~v~NDa~~ 136 (345)
|.+|+++. ||... -.-+..+.+-|.-.++ .|+.=.|.-.+
T Consensus 71 id~Iavt~GPGl~~~LrVG~~~Ak~LA~a~~--~PligV~Hleg 112 (345)
T PTZ00340 71 ISLICYTKGPGMGAPLSVGAVVARTLSLLWG--KPLVGVNHCVA 112 (345)
T ss_pred CCEEEEecCCCcHhhHHHHHHHHHHHHHHcC--CCEeecchHHH
Confidence 99888764 44321 1224567888888887 89888777664
No 84
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=95.56 E-value=2.4 Score=40.74 Aligned_cols=69 Identities=14% Similarity=0.179 Sum_probs=44.2
Q ss_pred eeEEeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhcccC---CCCCeEEEEeCccceeeeecCCCC
Q 019144 97 AVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---GKLHGCVLIAGTGTIAYGFTEDGR 167 (345)
Q Consensus 97 ~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~~~---g~~~~v~v~~GTG~~g~gi~~dG~ 167 (345)
.+.+++|-..+......+.+..+ .++. ..+++.|+..+++++... .....+++-+|.|..-..++..+.
T Consensus 100 ~~vitvP~~~~~~~r~~~~~~~~-~ag~-~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gttdvs~v~~~~ 171 (333)
T TIGR00904 100 RIVICVPSGITPVERRAVKESAL-SAGA-REVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLGG 171 (333)
T ss_pred cEEEEeCCCCCHHHHHHHHHHHH-HcCC-CeEEEecCHHHHHHhcCCcccCCceEEEEEcCCCeEEEEEEEeCC
Confidence 57789998876655544555443 4442 568999999998875321 123467777888876666653333
No 85
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=95.51 E-value=2.4 Score=40.57 Aligned_cols=101 Identities=18% Similarity=0.150 Sum_probs=68.3
Q ss_pred EEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCC----Ccc----ccCHHHHHHHHHHHHHHHHHHcCCCcccc
Q 019144 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS----NHN----SVGEDAARETIEKVMADALLKSGSNRSAV 95 (345)
Q Consensus 24 ~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~----~~~----~~~~~~~~~~l~~~i~~~~~~~~~~~~~i 95 (345)
+|+||-....+.++++|. +.+++........ ... +.....-.+.|...|++++++++.+..+|
T Consensus 1 iLaIdTs~~~~sval~~~---------~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~~~~~~~~i 71 (314)
T TIGR03723 1 ILGIETSCDETAVAIVDD---------GKGLLSNIVASQIELHARYGGVVPELASRAHLEAIPPLIEEALAEAGLTLSDI 71 (314)
T ss_pred CEEEECcccceEEEEEEC---------CceEEEEEEeehhhhccCcCCcCcchhHHHHHHHHHHHHHHHHHHcCCCHHHC
Confidence 589999999999999986 4457766543110 000 01123456778888999999999999899
Q ss_pred ceeEEeecCCCChhH---HHHHHHHHHhhCCCCceEEEeCcHHH
Q 019144 96 RAVCLAVSGVNHPTD---QQRILNWLRDIFPGNVRLYVHNDALA 136 (345)
Q Consensus 96 ~~Igig~pG~~~~~~---~~~l~~~L~~~~~~~~pV~v~NDa~~ 136 (345)
.+|+++. ||-+.+. ...+.+-|...++ .|+.-.|.-.+
T Consensus 72 d~iav~~-GPGsftglrig~~~Ak~la~~~~--~p~~~v~h~~a 112 (314)
T TIGR03723 72 DAIAVTA-GPGLIGALLVGVSFAKALALALN--KPLIGVNHLEG 112 (314)
T ss_pred CEEEEec-CCChHHhHHHHHHHHHHHHHHhC--CCEEecccHHH
Confidence 9888864 4433332 3466778887886 88777776554
No 86
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=95.45 E-value=0.046 Score=54.25 Aligned_cols=70 Identities=21% Similarity=0.202 Sum_probs=47.8
Q ss_pred EEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCcc------------c-cC-H----HHHHHHHHHHHHHH
Q 019144 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHN------------S-VG-E----DAARETIEKVMADA 84 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~------------~-~~-~----~~~~~~l~~~i~~~ 84 (345)
|-++||+|+|.+.+.++|+. +|+++......-++.. . .+ . ..+++.+.++++++
T Consensus 2 ~GiAvDiGTTti~~~L~dl~--------~G~~l~~~s~~NpQ~~~GaDViSRI~~a~~~~~~~~L~~~i~~~i~~li~~l 73 (412)
T PF14574_consen 2 YGIAVDIGTTTIAAYLVDLE--------TGEVLATASFLNPQRAYGADVISRISYALSPEGLEELQRLIRETINELIEEL 73 (412)
T ss_dssp EEEEEEE-SSEEEEEEEETT--------T--EEEEEEEE-GGGGT-SSHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcchhheeeEEEECC--------CCCEEEeecccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999994 7999998765322210 0 01 1 23677788888888
Q ss_pred HHHcCCCccccceeEE
Q 019144 85 LLKSGSNRSAVRAVCL 100 (345)
Q Consensus 85 ~~~~~~~~~~i~~Igi 100 (345)
+.++++++++|..+.|
T Consensus 74 ~~~~gi~~~~I~~i~i 89 (412)
T PF14574_consen 74 LEKAGISPEDIYEIVI 89 (412)
T ss_dssp HHHHT--GGGEEEEEE
T ss_pred HHHcCCCHHHeEEEEE
Confidence 8889999999987765
No 87
>PRK07058 acetate kinase; Provisional
Probab=95.34 E-value=0.22 Score=49.02 Aligned_cols=139 Identities=14% Similarity=0.107 Sum_probs=83.0
Q ss_pred CeEEEEeCccceeeeecCCCCeEE-eccCCCCcCCcCcHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCCCChhhHH
Q 019144 147 HGCVLIAGTGTIAYGFTEDGRDAR-AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDELI 225 (345)
Q Consensus 147 ~~v~v~~GTG~~g~gi~~dG~~~~-~Gg~G~~~gd~G~a~~iG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 225 (345)
+.|+.-+|.|..-+++ .||+.+- .-|+..+ +|=. .....|..++..+. .+.+..+ -+.+++.
T Consensus 202 ~~Iv~HLG~G~Si~Ai-~~GksvDtsmG~tpL---eGL~-----------mgtRsG~ldp~~l~-~l~~~~~-~s~~el~ 264 (396)
T PRK07058 202 KVVAAHLGSGASLCAL-DAGKSRDTSMGFSTL---DGIP-----------MATRCGALDPGVVL-HLLKQEG-MSLDEVE 264 (396)
T ss_pred CEEEEEeCCCceeeee-eCCEEEEcCCCCCCc---CCCc-----------ccCCCCCCChHHHH-HHHHhcC-CCHHHHH
Confidence 5788889999755544 7898874 2222221 1100 00011111111111 1222222 2456676
Q ss_pred HHhhcCCC---hHHHhcchHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCccc
Q 019144 226 GWTYVDPS---WARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRR 302 (345)
Q Consensus 226 ~~~~~~~~---~~~~~~~~~~v~~~a~~gD~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~ 302 (345)
+.++++.- .+.+....++| + +.+|+.|+.+++-++..+.+.|.++...+.- .+.||+.||+.++...
T Consensus 265 ~~Ln~~SGLlg~sG~s~D~R~l-~--~~~d~~A~lA~d~f~yri~k~IGa~~a~Lg~-------vDaiVfTGGIgEns~~ 334 (396)
T PRK07058 265 DLLYHRSGLLGVSGISGDTRDL-L--ASDAPEAREALDLFALRIAGEIARLAATLGG-------LDAVVFTAGIGEHQPA 334 (396)
T ss_pred HHHhcccCcEEecCCCCCHHHH-h--hcCCHhHHHHHHHHHHHHHHHHHHHHHHhCC-------CCEEEECCccccCcHH
Confidence 66654321 01111223445 2 3479999999999999999999999999974 6899999999988665
Q ss_pred ccchHHHHHHHH
Q 019144 303 WDIGREVVKCIL 314 (345)
Q Consensus 303 ~~l~~~~~~~l~ 314 (345)
+ ++.+.+.+.
T Consensus 335 v--r~~i~~~l~ 344 (396)
T PRK07058 335 I--RAAVCERLA 344 (396)
T ss_pred H--HHHHHhhhh
Confidence 4 777877775
No 88
>PRK13324 pantothenate kinase; Reviewed
Probab=95.31 E-value=0.98 Score=42.10 Aligned_cols=127 Identities=13% Similarity=0.081 Sum_probs=74.9
Q ss_pred EEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEeec
Q 019144 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (345)
Q Consensus 24 ~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~p 103 (345)
+|.+|+|-|+|+++++|- .+++...+.++.... ...|+... .+..++++.+.....+.++.++.-
T Consensus 2 iL~iDiGNT~ik~gl~~~----------~~~~~~~r~~t~~~~-~t~de~~~----~l~~~~~~~~~~~~~i~~viisSV 66 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDG----------DRIVSQIRYATSSVD-STSDQMGV----FLRQALRENSVDLGKIDGCGISSV 66 (258)
T ss_pred EEEEEeCCCceEEEEEEC----------CEEEEEEEEecCccc-cchHHHHH----HHHHHHHhcCCCccCCCeEEEEeC
Confidence 789999999999999985 355555554432222 34454444 445556656655556777777543
Q ss_pred CCCChhHHHHHHHHHHhhCCCCceEEEeCcH-----------------HHHHhccc--CCCCCeEEEEeCccceeeeecC
Q 019144 104 GVNHPTDQQRILNWLRDIFPGNVRLYVHNDA-----------------LAALASGT--MGKLHGCVLIAGTGTIAYGFTE 164 (345)
Q Consensus 104 G~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa-----------------~~a~~~~~--~g~~~~v~v~~GTG~~g~gi~~ 164 (345)
- |.-...+.+.+.+.|+. .|+++..+. -+++++++ ...++.+++-+||=+---.+..
T Consensus 67 v---P~l~~~l~~~~~~~~~~-~~~~v~~~~~~l~~~y~~p~~lG~DR~~~~vaA~~~~~~~~~iViD~GTA~T~d~v~~ 142 (258)
T PRK13324 67 V---PHLNYSLGSAVIKYFNI-KPFFISMDTTDLDMSAVEAHQVGADRIASCISAIADHPNKDLLIIDLGTATTFDLVTK 142 (258)
T ss_pred c---chhHHHHHHHHHHHhCC-CeEEEecCCccceeecCChhhccHHHHHHHHHHHHhcCCCCEEEEEcCCceEEEEEcC
Confidence 3 44334566666777752 354543222 12233332 2234688888999875555556
Q ss_pred CCCeE
Q 019144 165 DGRDA 169 (345)
Q Consensus 165 dG~~~ 169 (345)
+|+..
T Consensus 143 ~g~~~ 147 (258)
T PRK13324 143 DKKYL 147 (258)
T ss_pred CCeEE
Confidence 67665
No 89
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=95.04 E-value=0.095 Score=43.95 Aligned_cols=91 Identities=14% Similarity=0.185 Sum_probs=58.0
Q ss_pred EEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEee
Q 019144 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~ 102 (345)
.+||+|.|..+|=+++.|. .+.+ ++....-.+ .+.+..++.+.+++++. ++..|.||+
T Consensus 2 riL~lD~G~kriGiAvsd~---------~~~~-a~pl~~i~~---~~~~~~~~~l~~li~~~---------~i~~iVvGl 59 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDP---------LGII-ASPLETIPR---RNREKDIEELKKLIEEY---------QIDGIVVGL 59 (135)
T ss_dssp EEEEEEECSSEEEEEEEET---------TTSS-EEEEEEEEE---CCCCCCHHHHHHHHHHC---------CECEEEEEE
T ss_pred eEEEEEeCCCeEEEEEecC---------CCCe-EeeeEEEEC---CCCchHHHHHHHHHHHh---------CCCEEEEeC
Confidence 6899999999999999997 5443 322111111 11233455666555553 577888888
Q ss_pred cCC----CChh--HHHHHHHHHHhhC-CCCceEEEeCcHHHH
Q 019144 103 SGV----NHPT--DQQRILNWLRDIF-PGNVRLYVHNDALAA 137 (345)
Q Consensus 103 pG~----~~~~--~~~~l~~~L~~~~-~~~~pV~v~NDa~~a 137 (345)
|=- .++. ....+.+.|+++| + .||++-+.--..
T Consensus 60 P~~~~G~~~~~~~~v~~f~~~L~~~~~~--ipV~~~DEr~TT 99 (135)
T PF03652_consen 60 PLNMDGSESEQARRVRKFAEELKKRFPG--IPVILVDERLTT 99 (135)
T ss_dssp EBBCTSSC-CCHHHHHHHHHHHHHHH-T--SEEEEEECSCSH
T ss_pred CcccCCCccHHHHHHHHHHHHHHHhcCC--CcEEEECCChhH
Confidence 832 2222 2357888999998 5 899988776533
No 90
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=94.93 E-value=0.15 Score=44.85 Aligned_cols=74 Identities=23% Similarity=0.286 Sum_probs=50.5
Q ss_pred EEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCc---cccCHHHHHHHHHHHHHHHHHHcCCCccccceeEE
Q 019144 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNH---NSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL 100 (345)
Q Consensus 24 ~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~---~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igi 100 (345)
++|+|+|++++++++....+. ..-+++.....++... .=.+.+++.+.+.++++++-++++. ++..+.+
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~-----~~~~i~g~~~~~s~gi~~G~I~d~~~~~~~I~~ai~~ae~~~~~---~i~~V~v 72 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDED-----GEINVIGVGEVPSRGIRKGVIVDIEAAARAIREAVEEAERMAGV---KIDSVYV 72 (187)
T ss_pred CEEEEeccceEEEEEEEEcCC-----CCEEEEEEEEecCCCccCcEEECHHHHHHHHHHHHHHHHHHhCC---cccEEEE
Confidence 479999999999999875210 0236666665543211 1146777888888888888777675 3567888
Q ss_pred eecCC
Q 019144 101 AVSGV 105 (345)
Q Consensus 101 g~pG~ 105 (345)
++||.
T Consensus 73 ~i~g~ 77 (187)
T smart00842 73 GISGR 77 (187)
T ss_pred EEcCC
Confidence 99997
No 91
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=94.87 E-value=0.021 Score=57.39 Aligned_cols=71 Identities=14% Similarity=0.078 Sum_probs=48.0
Q ss_pred EEEecCccceeeEEEcCccCCCCCCCCCCee-EEEecCCC------CccccCHHHHHHHHHHHHHHHHHHcCCCccccce
Q 019144 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVL-ARAAAGCS------NHNSVGEDAARETIEKVMADALLKSGSNRSAVRA 97 (345)
Q Consensus 25 lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~-~~~~~~~~------~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~ 97 (345)
++||+|+|++|++++|.++ ..++++ .....+.+ ...+++++++++.+.++++++.+. ..+|.+
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~----~~~i~~ 70 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYEN------ECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDAE----GIAPDS 70 (454)
T ss_pred CcEeccCCchheEEEEEcC------CCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhcc----CCCceE
Confidence 5899999999999999821 015665 33322221 123467888999999999888653 235888
Q ss_pred eEEeecCC
Q 019144 98 VCLAVSGV 105 (345)
Q Consensus 98 Igig~pG~ 105 (345)
|+|+..|.
T Consensus 71 Igis~q~~ 78 (454)
T TIGR02627 71 IGIDTWGV 78 (454)
T ss_pred EEEeccce
Confidence 88877663
No 92
>PRK13326 pantothenate kinase; Reviewed
Probab=94.36 E-value=1.9 Score=40.23 Aligned_cols=122 Identities=15% Similarity=0.102 Sum_probs=70.1
Q ss_pred cEEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEe
Q 019144 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLA 101 (345)
Q Consensus 22 ~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig 101 (345)
.+.|.||+|-|++++++++- ++++...+.++... .+.+++...+.+ +.+. ++..+.++
T Consensus 6 ~~~L~IDiGNT~ik~glf~~----------~~l~~~~r~~t~~~--~t~de~~~~l~~---------~~~~-~i~~viis 63 (262)
T PRK13326 6 SSQLIIDIGNTSISFALYKD----------NKMQIFCKLKTKLD--LSFDELYSFLKE---------KFDF-KVNQVFVS 63 (262)
T ss_pred cEEEEEEeCCCeEEEEEEEC----------CEEEEEEEeccCCC--CCHHHHHHHHhc---------CCCC-CCCEEEEE
Confidence 47899999999999999985 45665444433222 456665544443 2233 46676666
Q ss_pred ecCCCChhHHHHHHHHHHhhCCCCceEEE------------eC--------cHHHHHhccc--CCCCCeEEEEeCcccee
Q 019144 102 VSGVNHPTDQQRILNWLRDIFPGNVRLYV------------HN--------DALAALASGT--MGKLHGCVLIAGTGTIA 159 (345)
Q Consensus 102 ~pG~~~~~~~~~l~~~L~~~~~~~~pV~v------------~N--------Da~~a~~~~~--~g~~~~v~v~~GTG~~g 159 (345)
.-. |.....+.+.+++.|+. .|+++ .| |--+++++++ .+.++.+++-+||=+--
T Consensus 64 SVv---p~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~y~~~~~~LGaDR~a~~vaA~~~~~~~~~iVID~GTA~T~ 139 (262)
T PRK13326 64 SVV---PVIDKVLINVIFSLYKV-KPLFIGFDLNYDLSFNPYNSNKFLLGSDVFANLVGAIEYYNINDALVVDLGTACTI 139 (262)
T ss_pred eCc---ccHHHHHHHHHHHHhCC-CcEEEecCCccCceeecCCCCcccccHHHHHHHHHHHHhcCCCCEEEEECCCceEE
Confidence 544 33334466666666642 23333 22 2223344432 23247888889998754
Q ss_pred eeecCCCCeE
Q 019144 160 YGFTEDGRDA 169 (345)
Q Consensus 160 ~gi~~dG~~~ 169 (345)
-.+..+|+..
T Consensus 140 D~V~~~g~~l 149 (262)
T PRK13326 140 FAVSRQDGIL 149 (262)
T ss_pred EEEcCCCcEE
Confidence 4444666654
No 93
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=94.24 E-value=2 Score=39.66 Aligned_cols=119 Identities=14% Similarity=0.012 Sum_probs=66.8
Q ss_pred EEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEeecC
Q 019144 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (345)
Q Consensus 25 lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~pG 104 (345)
|.+|+|-|++++++++- ++++...+.++. .. ...++....+...+.+ .+..+.++.-.
T Consensus 2 L~iDiGNT~i~~g~~~~----------~~~~~~~r~~t~-~~-~t~de~~~~l~~~~~~----------~i~~v~vsSVv 59 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSG----------NKVYQFWRLATN-LM-KTYDEHSEFLKELFGK----------SLNKAFISSVV 59 (243)
T ss_pred EEEEECCCcEEEEEEEC----------CEEEEEEEecCC-Cc-cChHHHHHHHHHHHHh----------hCCEEEEEEcc
Confidence 68999999999999985 456555454433 22 4566665555544433 24455554433
Q ss_pred CCChhHHHHHHHHHHhhCCCCceEEE------------------eCcHHHHHhcccC-CCCCeEEEEeCccceeeeecCC
Q 019144 105 VNHPTDQQRILNWLRDIFPGNVRLYV------------------HNDALAALASGTM-GKLHGCVLIAGTGTIAYGFTED 165 (345)
Q Consensus 105 ~~~~~~~~~l~~~L~~~~~~~~pV~v------------------~NDa~~a~~~~~~-g~~~~v~v~~GTG~~g~gi~~d 165 (345)
+ .....+++.+++.++. .|+.+ --|--+++++++. -.++.+++-+||=+---.+..+
T Consensus 60 p---~~~~~l~~~~~~~~~~-~~~~~~~~~~~gl~~~y~~p~~LG~DR~a~~~aA~~~~~~~~lViD~GTA~Tid~v~~~ 135 (243)
T TIGR00671 60 P---ELTEAVRNMIPKIKNI-KPEIFFPLVYDGLPNLYKSPKELGIDRVANALAAIKFYGFNVVVVDAGTALTIDLVDQE 135 (243)
T ss_pred C---ChHHHHHHHHHHHhCC-CcEEECCCccCCcccccCChhhccHHHHHHHHHHHHHcCCCEEEEEcCCceEEEEEcCC
Confidence 3 3223466667776652 23222 2222334444321 1246888889998755444446
Q ss_pred CCeE
Q 019144 166 GRDA 169 (345)
Q Consensus 166 G~~~ 169 (345)
|+..
T Consensus 136 g~~~ 139 (243)
T TIGR00671 136 GKFL 139 (243)
T ss_pred CeEE
Confidence 6665
No 94
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=94.24 E-value=8.1 Score=40.30 Aligned_cols=91 Identities=19% Similarity=0.103 Sum_probs=51.6
Q ss_pred cCHHHHHHHHHHHHHHHHHHcCCCccccceeEEeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhc-cc-CCC
Q 019144 68 VGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALAS-GT-MGK 145 (345)
Q Consensus 68 ~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~-~~-~g~ 145 (345)
..++++...+.+.+++-.+.. -...+..+.|++|...+...+..+++.-+ ..++ .++++-|+.-+|+++ +. ...
T Consensus 95 ~~~eeisa~~L~~lk~~ae~~--lg~~v~~~VItVPayF~d~qR~at~~A~~-iaGl-~vlrlinEPtAAAlayg~~~~~ 170 (579)
T COG0443 95 YTPEEISAMILTKLKEDAEAY--LGEKVTDAVITVPAYFNDAQRQATKDAAR-IAGL-NVLRLINEPTAAALAYGLDKGK 170 (579)
T ss_pred eCHHHHHHHHHHHHHHHHHHh--hCCCcceEEEEeCCCCCHHHHHHHHHHHH-HcCC-CeEEEecchHHHHHHhHhccCC
Confidence 456665555544444433322 23457889999999987655444443322 2343 578999999998775 22 222
Q ss_pred -CCeEEEEeCccceeeee
Q 019144 146 -LHGCVLIAGTGTIAYGF 162 (345)
Q Consensus 146 -~~~v~v~~GTG~~g~gi 162 (345)
...+++=.|.|.--..+
T Consensus 171 ~~~vlV~DlGGGTfDvSl 188 (579)
T COG0443 171 EKTVLVYDLGGGTFDVSL 188 (579)
T ss_pred CcEEEEEEcCCCCEEEEE
Confidence 22344446766544444
No 95
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=94.20 E-value=1.9 Score=41.85 Aligned_cols=75 Identities=15% Similarity=0.041 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhC-CCceeeC---CCC
Q 019144 252 DEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDY-PGAVPIR---PKV 327 (345)
Q Consensus 252 D~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~-~~~~i~~---~~~ 327 (345)
...|+.++.-.+..++..........+. .+||++|......+.. ...+...+.=+. ..++... ..+
T Consensus 261 ~Dia~sll~mv~~nIg~la~l~A~~~~~--------~~I~f~G~~~~~~~~~--~~~l~~a~~~~s~~~~~~~fl~h~gy 330 (341)
T PF03630_consen 261 EDIAKSLLNMVSNNIGQLAYLHAKIHGV--------KRIVFGGSFIRNNPIT--MRTLSYAINFWSKGELKALFLRHEGY 330 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT----------EEEEESGGGTSSCHH--HHHHHHHHHHHTTTS-EEEEETTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC--------CEEEEEeccccCCHHH--HHHHHHHHHHhccCCceEEEecCCch
Confidence 3567788888888888877777777774 8999999999876542 455544444332 2355443 457
Q ss_pred ChHHHHHHH
Q 019144 328 EPAVGAALL 336 (345)
Q Consensus 328 a~~~GAa~l 336 (345)
.+++||.+.
T Consensus 331 ~galGa~l~ 339 (341)
T PF03630_consen 331 LGALGAFLK 339 (341)
T ss_dssp HHHHHHHHT
T ss_pred hHHHHHHHh
Confidence 788888753
No 96
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=94.10 E-value=0.24 Score=47.51 Aligned_cols=125 Identities=16% Similarity=0.123 Sum_probs=78.1
Q ss_pred EEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEeecC
Q 019144 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (345)
Q Consensus 25 lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~pG 104 (345)
||+||||-|+|++++|. +|.+......+++-| ++++ .|.+++++++++.+. ...++|-+.|
T Consensus 1 ~G~DiGGA~~K~a~~~~---------~g~~~~v~~~~~plW--~~~~----~L~~~l~~~~~~~~~----~~~~avtMTg 61 (318)
T TIGR03123 1 LGIDIGGANTKAAELDE---------DGRIKEVHQLYCPLW--KGND----KLAETLKEISQDLSS----ADNVAVTMTG 61 (318)
T ss_pred CccccccceeeeEEecC---------CCceeEEEEecCccc--CCch----HHHHHHHHHHHhcCc----cceEEEEeeh
Confidence 68999999999999997 787776666666655 4555 444455555554422 2467888899
Q ss_pred C-----CChhH-HHHHHHHHHhhCCCCceE-EEeCcHHHH-------------H---hc-c-c--CCCCCeEEEEeCccc
Q 019144 105 V-----NHPTD-QQRILNWLRDIFPGNVRL-YVHNDALAA-------------L---AS-G-T--MGKLHGCVLIAGTGT 157 (345)
Q Consensus 105 ~-----~~~~~-~~~l~~~L~~~~~~~~pV-~v~NDa~~a-------------~---~~-~-~--~g~~~~v~v~~GTG~ 157 (345)
= .++.+ ...|.+.++++|+ .|+ ++.+|.... + .+ . + ...+|.+++=+|.-+
T Consensus 62 ELaD~f~~r~~GV~~i~~~~~~~~~--~~~~i~~s~GG~~s~~~a~~~pv~~~~Sg~~a~A~~la~~~~~~I~~DmGGTT 139 (318)
T TIGR03123 62 ELADCFEDKAEGVEFILAAVESAFG--SPVSVFASDGGFVSAEEALTNPLDVAAANWLATAQLIAKRIPECLFVDMGSTT 139 (318)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHhcC--CCeEEEecCCCCccHHHHHHhHHHHHHhhHHHHHHHHHhcCCCEEEEEcCccc
Confidence 5 23333 3578889999997 455 445554211 0 01 1 0 125677777677444
Q ss_pred eeeeecCCCCeEE
Q 019144 158 IAYGFTEDGRDAR 170 (345)
Q Consensus 158 ~g~gi~~dG~~~~ 170 (345)
.=...+.||++..
T Consensus 140 tDi~~i~~G~p~~ 152 (318)
T TIGR03123 140 TDIIPIIDGEVAA 152 (318)
T ss_pred eeeEEecCCEeee
Confidence 3455678888764
No 97
>CHL00094 dnaK heat shock protein 70
Probab=94.02 E-value=9.3 Score=40.17 Aligned_cols=90 Identities=14% Similarity=0.062 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHHHHHH-cCCCccccceeEEeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhcc-c-C-C
Q 019144 69 GEDAARETIEKVMADALLK-SGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASG-T-M-G 144 (345)
Q Consensus 69 ~~~~~~~~l~~~i~~~~~~-~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~-~-~-g 144 (345)
+++++...+.+.+.+..++ .+ ..+..+.|++|-..+......+.+..+. -++ ..+.+-|+..+|+++- . . .
T Consensus 111 s~eei~a~iL~~l~~~ae~~lg---~~v~~~VItVPa~f~~~qR~a~~~Aa~~-AGl-~v~~li~EptAAAlay~~~~~~ 185 (621)
T CHL00094 111 SPEEISAQVLRKLVEDASKYLG---ETVTQAVITVPAYFNDSQRQATKDAGKI-AGL-EVLRIINEPTAASLAYGLDKKN 185 (621)
T ss_pred cHHHHHHHHHHHHHHHHHHHhC---CCCCeEEEEECCCCCHHHHHHHHHHHHH-cCC-ceEEEeccHHHHHHHhccccCC
Confidence 4455555444444443322 22 2466788899998765554455554433 342 4688999999887742 1 1 1
Q ss_pred CCCeEEEEeCccceeeeec
Q 019144 145 KLHGCVLIAGTGTIAYGFT 163 (345)
Q Consensus 145 ~~~~v~v~~GTG~~g~gi~ 163 (345)
....+++=.|.|..-..++
T Consensus 186 ~~~vlV~DlGgGT~DvSv~ 204 (621)
T CHL00094 186 NETILVFDLGGGTFDVSIL 204 (621)
T ss_pred CCEEEEEEcCCCeEEEEEE
Confidence 2234555577776555554
No 98
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=94.00 E-value=0.5 Score=39.74 Aligned_cols=92 Identities=16% Similarity=0.198 Sum_probs=58.2
Q ss_pred EEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEee
Q 019144 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~ 102 (345)
.+||+|.|..+|=+++.|. .+.+ +....... . .+....++.|.+.+++. ++..|.||+
T Consensus 5 ~iLalD~G~kriGvAv~d~---------~~~~-a~pl~~i~-~--~~~~~~~~~l~~~i~~~---------~i~~iVvGl 62 (138)
T PRK00109 5 RILGLDVGTKRIGVAVSDP---------LGGT-AQPLETIK-R--NNGTPDWDRLEKLIKEW---------QPDGLVVGL 62 (138)
T ss_pred cEEEEEeCCCEEEEEEecC---------CCCE-EcCEEEEE-c--CCCchHHHHHHHHHHHh---------CCCEEEEec
Confidence 6999999999999999997 4443 33221111 1 11122355555554443 467899999
Q ss_pred cCC----CChhH--HHHHHHHHHhhCCCCceEEEeCcHHHHH
Q 019144 103 SGV----NHPTD--QQRILNWLRDIFPGNVRLYVHNDALAAL 138 (345)
Q Consensus 103 pG~----~~~~~--~~~l~~~L~~~~~~~~pV~v~NDa~~a~ 138 (345)
|=- .++.. ...+.+.|+++++ .||++-+.-....
T Consensus 63 P~~~~G~~~~~~~~v~~f~~~L~~~~~--~~v~~~DEr~TT~ 102 (138)
T PRK00109 63 PLNMDGTEGPRTERARKFANRLEGRFG--LPVVLVDERLSTV 102 (138)
T ss_pred cCCCCCCcCHHHHHHHHHHHHHHHHhC--CCEEEEcCCcCHH
Confidence 854 22211 2478888988886 8998888776443
No 99
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=93.68 E-value=1.5 Score=44.12 Aligned_cols=142 Identities=14% Similarity=0.173 Sum_probs=73.3
Q ss_pred EEEEEecCccceeeEEEcCc----cCCCCCCC----CCCeeEEEecCCCC---ccccCHHHHHHHHHHHHHHHHHHcCCC
Q 019144 23 VILGLDGGTTSTVCICMPVI----SMSDSLPD----PLPVLARAAAGCSN---HNSVGEDAARETIEKVMADALLKSGSN 91 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~----~~~~~~~~----~g~i~~~~~~~~~~---~~~~~~~~~~~~l~~~i~~~~~~~~~~ 91 (345)
..+|+|||+|.|.+.+-.+. .+..++|+ +-+++.|...-.++ ....+ .+.+.+.|++-.+++++.
T Consensus 7 ~SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~I~dkev~yrS~i~fTPl~~~~~ID----~~~i~~~V~~ey~~Agi~ 82 (475)
T PRK10719 7 LSVGIDIGTTTTQVIFSRLELENRASVFQVPRIEIIDKEIIYRSPIYFTPLLKQGEID----EAAIKELIEEEYQKAGIA 82 (475)
T ss_pred EEEEEeccCceEEEEEEEEEEecccccccCceEEEeeeEEEEecCceecCCCCCcccc----HHHHHHHHHHHHHHcCCC
Confidence 78999999999998876652 11111111 11223332221111 11122 356777888889999999
Q ss_pred ccccceeEEeecCCCChhHHHHHHHHHHhhCCC-CceE------EEeCc--HHHHHhccc-CCCC-CeEEEEeCccceee
Q 019144 92 RSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPG-NVRL------YVHND--ALAALASGT-MGKL-HGCVLIAGTGTIAY 160 (345)
Q Consensus 92 ~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~-~~pV------~v~ND--a~~a~~~~~-~g~~-~~v~v~~GTG~~g~ 160 (345)
+++|..=..=+.|.... ..++.+.+++.-.. ..-| -++.= ..++..+.. .+.+ ..+++=+|.|..-.
T Consensus 83 ~~die~~ahIITg~~~~--~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva~~ASg~avLseEke~gVa~IDIGgGTT~i 160 (475)
T PRK10719 83 PESIDSGAVIITGETAR--KENAREVVMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEERNTRVLNIDIGGGTANY 160 (475)
T ss_pred HHHccccEEEEEechhH--HHHHHHHHHHhcccccceeeeccCccHHHhhhHHHhhHHHhhhhccCceEEEEeCCCceEE
Confidence 99887544445565432 23455555541100 0011 00000 111111111 1222 34556688888788
Q ss_pred eecCCCCeEE
Q 019144 161 GFTEDGRDAR 170 (345)
Q Consensus 161 gi~~dG~~~~ 170 (345)
.+..+|++..
T Consensus 161 aVf~~G~l~~ 170 (475)
T PRK10719 161 ALFDAGKVID 170 (475)
T ss_pred EEEECCEEEE
Confidence 8889998865
No 100
>PLN02920 pantothenate kinase 1
Probab=93.34 E-value=9 Score=37.82 Aligned_cols=75 Identities=13% Similarity=0.051 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhh-CCCceeeC---CCC
Q 019144 252 DEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRD-YPGAVPIR---PKV 327 (345)
Q Consensus 252 D~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~-~~~~~i~~---~~~ 327 (345)
...|+.++.-....++.-........+. .+||++|......+. ..+.+...+.=+ .-.++... ..+
T Consensus 271 eDia~SLL~mVs~nIgqiA~L~A~~~~i--------k~Ivf~G~fir~~~~--tm~~ls~a~~fwS~g~~ka~FLrHeGY 340 (398)
T PLN02920 271 EDVARSLLRMISNNIGQISYLNALRFGL--------KRIFFGGFFIRGHSY--TMDTISVAVHFWSKGEAKAMFLRHEGF 340 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC--------CEEEEEeecccCcHH--HHHHHHHHHHHhccCceeEEEecCcch
Confidence 3566777777777777766666666664 789999997766543 244443333222 12344443 356
Q ss_pred ChHHHHHHH
Q 019144 328 EPAVGAALL 336 (345)
Q Consensus 328 a~~~GAa~l 336 (345)
.+++||.+.
T Consensus 341 lGAlGAfl~ 349 (398)
T PLN02920 341 LGALGAFMS 349 (398)
T ss_pred hHHHHHHHh
Confidence 788888743
No 101
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=93.26 E-value=0.44 Score=46.54 Aligned_cols=72 Identities=25% Similarity=0.356 Sum_probs=48.7
Q ss_pred EEEEecCccceeeEEEcCccCCCCCCCCC--CeeEEEecCCCCc---cccCHHHHHHHHHHHHHHHHHHcCCCcccccee
Q 019144 24 ILGLDGGTTSTVCICMPVISMSDSLPDPL--PVLARAAAGCSNH---NSVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (345)
Q Consensus 24 ~lgvDiG~t~~~~~l~d~~~~~~~~~~~g--~i~~~~~~~~~~~---~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~I 98 (345)
++|+|||++++++++....+ ++ +++.....++... .=.+.+.+.+.+.++++++-++++.+ +..+
T Consensus 2 ~~~lDIGs~~ik~vv~~~~~-------~~~~~i~~~~~~~~~gi~~G~I~d~~~~~~~i~~al~~~e~~~~~~---i~~v 71 (371)
T TIGR01174 2 IVGLDIGTSKICAIVAEVLE-------DGELNIIGVGTHPSRGIKKGVINDIEAAVGSIQRAIEAAELMAGCE---IRSV 71 (371)
T ss_pred EEEEEeccceEEEEEEEEcC-------CCCEEEEEEEEecCCCccCcEEEcHHHHHHHHHHHHHHHHHHhCCc---ccEE
Confidence 68999999999999986521 23 5566555543211 11456778888888888877667654 5567
Q ss_pred EEeecCC
Q 019144 99 CLAVSGV 105 (345)
Q Consensus 99 gig~pG~ 105 (345)
.+++||.
T Consensus 72 ~~~v~g~ 78 (371)
T TIGR01174 72 IVSISGA 78 (371)
T ss_pred EEEEccc
Confidence 7888874
No 102
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=93.23 E-value=0.56 Score=46.81 Aligned_cols=76 Identities=16% Similarity=0.296 Sum_probs=52.2
Q ss_pred cEEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCcc---ccCHHHHHHHHHHHHHHHHHHcCCCcccccee
Q 019144 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHN---SVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (345)
Q Consensus 22 ~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~---~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~I 98 (345)
..++|+|+|+|++++++....+. ..-+++.....++.... =.+.+++.+.|.++++++-..++. ++..+
T Consensus 8 ~~i~~lDIGsskv~~vv~~~~~~-----~~~~i~g~~~~~s~gi~~G~I~d~~~~~~aI~~av~~ae~~~g~---~i~~v 79 (420)
T PRK09472 8 KLVVGLEIGTAKVAALVGEVLPD-----GMVNIIGVGSCPSRGMDKGGVNDLESVVKCVQRAIDQAELMADC---QISSV 79 (420)
T ss_pred CEEEEEEcccceEEEEEEEEcCC-----CCEEEEEEEEccCCCccCCEEEcHHHHHHHHHHHHHHHHHHhCC---cccEE
Confidence 48999999999999988764210 03466666665543211 135777888888888887766665 46677
Q ss_pred EEeecCC
Q 019144 99 CLAVSGV 105 (345)
Q Consensus 99 gig~pG~ 105 (345)
.+++||.
T Consensus 80 ~v~i~g~ 86 (420)
T PRK09472 80 YLALSGK 86 (420)
T ss_pred EEEecCc
Confidence 8888886
No 103
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=92.76 E-value=0.99 Score=38.11 Aligned_cols=90 Identities=17% Similarity=0.190 Sum_probs=59.6
Q ss_pred EEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHH-HHHHHHHHHHHHHHHHcCCCccccceeEEe
Q 019144 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGED-AARETIEKVMADALLKSGSNRSAVRAVCLA 101 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~-~~~~~l~~~i~~~~~~~~~~~~~i~~Igig 101 (345)
.++|+|.|.-+|=+++.|. .+ .+++. ..+....... ..++.+.+++++. ++..|.||
T Consensus 3 ~ilalD~G~KrIGvA~sd~---------~~-~~A~p---l~~i~~~~~~~~~~~~l~~li~~~---------~~~~vVVG 60 (141)
T COG0816 3 RILALDVGTKRIGVAVSDI---------LG-SLASP---LETIKRKNGKPQDFNALLKLVKEY---------QVDTVVVG 60 (141)
T ss_pred eEEEEecCCceEEEEEecC---------CC-ccccc---hhhheeccccHhhHHHHHHHHHHh---------CCCEEEEe
Confidence 7999999999999999997 33 23332 2222222223 3566666666654 56788888
Q ss_pred ecCCC----ChhH--HHHHHHHHHhhCCCCceEEEeCcHHH
Q 019144 102 VSGVN----HPTD--QQRILNWLRDIFPGNVRLYVHNDALA 136 (345)
Q Consensus 102 ~pG~~----~~~~--~~~l~~~L~~~~~~~~pV~v~NDa~~ 136 (345)
+|=-. .+.. ...+.+.|+++|+ .||.+...-..
T Consensus 61 lP~~m~g~~~~~~~~~~~f~~~L~~r~~--lpv~l~DERlt 99 (141)
T COG0816 61 LPLNMDGTEGPRAELARKFAERLKKRFN--LPVVLWDERLS 99 (141)
T ss_pred cCcCCCCCcchhHHHHHHHHHHHHHhcC--CCEEEEcCccC
Confidence 88642 2222 3478899999998 89888776553
No 104
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=92.64 E-value=10 Score=36.47 Aligned_cols=72 Identities=13% Similarity=0.147 Sum_probs=47.4
Q ss_pred eeEEeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhcccC--C-CCCeEEEEeCccceeeeecCCCCeEE
Q 019144 97 AVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM--G-KLHGCVLIAGTGTIAYGFTEDGRDAR 170 (345)
Q Consensus 97 ~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~~~--g-~~~~v~v~~GTG~~g~gi~~dG~~~~ 170 (345)
.+.+++|-..+......+.+.++. ++. ..+.+-|+..+++++... . ....+++=+|.|..-..++..|.+..
T Consensus 97 ~~vitvP~~~~~~~r~~~~~a~~~-ag~-~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggttdvsvv~~g~~~~ 171 (336)
T PRK13928 97 RIMICIPTGITSVEKRAVREAAEQ-AGA-KKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLSLGGIVT 171 (336)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHH-cCC-CceEecccHHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEEeCCEEE
Confidence 467888887766555556666544 442 458899999988876321 1 23356677888876677777776654
No 105
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=92.41 E-value=0.52 Score=43.61 Aligned_cols=87 Identities=17% Similarity=0.198 Sum_probs=53.3
Q ss_pred ccEEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEE
Q 019144 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL 100 (345)
Q Consensus 21 ~~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igi 100 (345)
...++|+||||-+++++..|- +...+..... +.|. ..+ ++.+.+++...+ .....+|+
T Consensus 2 ~~kilGiDIGGAntk~a~~DG---------~~~~~d~~Yl--PMWk--~k~----rL~~~Lkei~~k-----~~~~~vgv 59 (330)
T COG1548 2 KMKILGIDIGGANTKIASSDG---------DNYKIDHIYL--PMWK--KKD----RLEETLKEIVHK-----DNVDYVGV 59 (330)
T ss_pred CceEEEeeccCccchhhhccC---------CeeeeeEEEe--cccc--chh----HHHHHHHHHhcc-----CCcceeEE
Confidence 347999999999999998654 2222233332 3332 233 444555555433 24567788
Q ss_pred eecCCC-----Ch-hHHHHHHHHHHhhCCCCceEEEe
Q 019144 101 AVSGVN-----HP-TDQQRILNWLRDIFPGNVRLYVH 131 (345)
Q Consensus 101 g~pG~~-----~~-~~~~~l~~~L~~~~~~~~pV~v~ 131 (345)
-+.|-. +. .....+.+..+..|+ .||++-
T Consensus 60 vMTaELaD~f~tk~eGVe~Ii~~v~~Af~--~pv~~v 94 (330)
T COG1548 60 VMTAELADAFKTKAEGVEDIIDTVEKAFN--CPVYVV 94 (330)
T ss_pred EeeHHHHHHhhhHHhHHHHHHHHHHHhcC--CceEEE
Confidence 788842 22 233578889999997 886654
No 106
>PRK10854 exopolyphosphatase; Provisional
Probab=92.25 E-value=2.7 Score=43.15 Aligned_cols=143 Identities=13% Similarity=0.111 Sum_probs=88.3
Q ss_pred cccCCccEEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCC--CC-ccccC--HHHHHHHHHHHHHHHHHHcC-
Q 019144 16 EESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGC--SN-HNSVG--EDAARETIEKVMADALLKSG- 89 (345)
Q Consensus 16 ~~~~~~~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~--~~-~~~~~--~~~~~~~l~~~i~~~~~~~~- 89 (345)
+.+|....+-.||+|+.++++.+++..+ ..-+++.+.+... .. ....+ .++.+++..+++++|.+...
T Consensus 5 ~~~~~~~~~A~IDIGSNSirL~I~e~~~------~~~~~i~~~k~~vrLg~g~~~~g~Ls~e~~~r~~~~L~~F~~~~~~ 78 (513)
T PRK10854 5 DKSPRPQEFAAVDLGSNSFHMVIARVVD------GAMQIIGRLKQRVHLADGLDSDNMLSEEAMERGLNCLSLFAERLQG 78 (513)
T ss_pred CCCCCCCEEEEEEeccchheEEEEEecC------CcEEEeeeeeEEEECCCCcCCCCCcCHHHHHHHHHHHHHHHHHHHh
Confidence 3455455899999999999999999721 0113333322211 11 11112 25677888888888766542
Q ss_pred CCccccceeEEeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHh---ccc--C-CCCCeEEEEeCccceeeeec
Q 019144 90 SNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALA---SGT--M-GKLHGCVLIAGTGTIAYGFT 163 (345)
Q Consensus 90 ~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~---~~~--~-g~~~~v~v~~GTG~~g~gi~ 163 (345)
...+++ ..++++-.=+......+.+.+++.++ .+|.|-+.-.=|-+ |.. . ..++.+++=+|.|+.-..+.
T Consensus 79 ~~v~~v--~~vATsAlReA~N~~~fl~~i~~~tG--l~i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~ 154 (513)
T PRK10854 79 FSPANV--CIVGTHTLRQALNATDFLKRAEKVIP--YPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIG 154 (513)
T ss_pred CCCCeE--EEEehHHHHcCcCHHHHHHHHHHHHC--CCeEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEe
Confidence 222234 35666666444445678899999998 89999998774422 221 1 12357888899998776666
Q ss_pred CCCCe
Q 019144 164 EDGRD 168 (345)
Q Consensus 164 ~dG~~ 168 (345)
.++++
T Consensus 155 ~~~~~ 159 (513)
T PRK10854 155 ENFEP 159 (513)
T ss_pred cCCCe
Confidence 66754
No 107
>PRK13322 pantothenate kinase; Reviewed
Probab=92.19 E-value=3.3 Score=38.30 Aligned_cols=118 Identities=15% Similarity=0.070 Sum_probs=65.3
Q ss_pred EEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEeec
Q 019144 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (345)
Q Consensus 24 ~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~p 103 (345)
+|.||+|-|++|+++++. .++++.+.+ . . .+.++....+. .+ +...+..+.++.-
T Consensus 2 ~L~IDiGNT~iK~~l~~~---------~~~~~~~~~---~-~--~t~~~~~~~l~----~~------~~~~i~~v~vsSV 56 (246)
T PRK13322 2 ILELDCGNSRLKWRVIDN---------GGQIIEHGA---H-L--DSPAELLLGLA----NL------ASLAPTRCRIVSV 56 (246)
T ss_pred EEEEEeCCCcEEEEEEcC---------CCchhhhcc---c-c--CCHHHHHHHHH----hC------CccCCCEEEEEeC
Confidence 789999999999999985 345443222 1 1 23454444332 11 2224667777655
Q ss_pred CCCChhHHHHHHHHHHhhCCCCceEEEeCcHH-------------------HHHhcccC-CCCCeEEEEeCccceeeeec
Q 019144 104 GVNHPTDQQRILNWLRDIFPGNVRLYVHNDAL-------------------AALASGTM-GKLHGCVLIAGTGTIAYGFT 163 (345)
Q Consensus 104 G~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~-------------------~a~~~~~~-g~~~~v~v~~GTG~~g~gi~ 163 (345)
.+. .....+.+.+++.|+. .|.++..+.. +++++++. -.+..+++-+||=+---.+.
T Consensus 57 ~p~--~~~~~l~~~l~~~~~~-~~~~v~~~~~~~gv~~~y~~p~~LG~DR~~~~~aA~~~~~~~~lViD~GTA~TiD~v~ 133 (246)
T PRK13322 57 LSE--EETARLVAILEKRLGI-PVVFAKVAAELAGVRNGYEDPEQLGIDRWLALLGAFHLAKNACLVIDCGTAVTIDLVD 133 (246)
T ss_pred CCH--HHHHHHHHHHHHHhCC-CeEEEecCCcCCCceecCCChhhccHHHHHHHHHHHHHcCCCEEEEEcCCeeEEEEEc
Confidence 442 2234577788777752 3445544433 22333321 12346778888887554444
Q ss_pred CCCCeE
Q 019144 164 EDGRDA 169 (345)
Q Consensus 164 ~dG~~~ 169 (345)
.+|+..
T Consensus 134 ~~g~~~ 139 (246)
T PRK13322 134 ADGQHL 139 (246)
T ss_pred CCCcEe
Confidence 567665
No 108
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=92.09 E-value=18 Score=38.24 Aligned_cols=91 Identities=13% Similarity=0.032 Sum_probs=55.0
Q ss_pred cCHHHHHHHHHHHHHHHHHHcCCCccccceeEEeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhcc-c-C--
Q 019144 68 VGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASG-T-M-- 143 (345)
Q Consensus 68 ~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~-~-~-- 143 (345)
.+|+++...+.+.+.+..++.- ...+..+.|++|-..+...+..+++..+. .++ ..+.+-|+..+|+++- . .
T Consensus 115 ~~peel~a~iL~~lk~~ae~~~--g~~v~~~VItVPa~f~~~qR~a~~~Aa~~-AGl-~v~~li~EptAAAl~y~~~~~~ 190 (653)
T PTZ00009 115 FHPEEISSMVLQKMKEIAEAYL--GKQVKDAVVTVPAYFNDSQRQATKDAGTI-AGL-NVLRIINEPTAAAIAYGLDKKG 190 (653)
T ss_pred ECHHHHHHHHHHHHHHHHHHHh--CCCcceeEEEeCCCCCHHHHHHHHHHHHH-cCC-ceeEEecchHHHHHHHhhhccC
Confidence 3566766666665555444321 13477889999999876655556555443 342 4578999999887642 1 1
Q ss_pred -CCCCeEEEEeCccceeeee
Q 019144 144 -GKLHGCVLIAGTGTIAYGF 162 (345)
Q Consensus 144 -g~~~~v~v~~GTG~~g~gi 162 (345)
.....+++=.|.|..-..+
T Consensus 191 ~~~~~vlv~D~GggT~dvsv 210 (653)
T PTZ00009 191 DGEKNVLIFDLGGGTFDVSL 210 (653)
T ss_pred CCCCEEEEEECCCCeEEEEE
Confidence 1233555667776544444
No 109
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=92.02 E-value=3.6 Score=40.03 Aligned_cols=93 Identities=20% Similarity=0.274 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHH-cCCCccccceeEEeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhcccCCCCCeEEEE
Q 019144 74 RETIEKVMADALLK-SGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLI 152 (345)
Q Consensus 74 ~~~l~~~i~~~~~~-~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~~~g~~~~v~v~ 152 (345)
++.+..+++.++.+ .+.++.. ..+.+..|-..++.....+.+.|-+.|+. ..+++.++..+++++ .+..++++|-
T Consensus 74 ~~~~e~i~~~~~~~~l~~~~~~-~~vll~~p~~~~~~~r~~~~e~lfE~~~~-~~v~~~~~~~~a~~~--~g~~~~lVVD 149 (373)
T smart00268 74 WDDMEKIWDYTFFNELRVEPEE-HPVLLTEPPMNPKSNREKILEIMFETFNF-PALYIAIQAVLSLYA--SGRTTGLVID 149 (373)
T ss_pred HHHHHHHHHHHHhhhcCCCCcc-CeeEEecCCCCCHHHHHHHHHHhhccCCC-CeEEEeccHHHHHHh--CCCCEEEEEe
Confidence 55666666666663 3444322 35677788777666667788888888873 458999999998886 3456788999
Q ss_pred eCccceeeeecCCCCeEE
Q 019144 153 AGTGTIAYGFTEDGRDAR 170 (345)
Q Consensus 153 ~GTG~~g~gi~~dG~~~~ 170 (345)
+|.+..-...+.||.+..
T Consensus 150 iG~~~t~v~pv~~G~~~~ 167 (373)
T smart00268 150 SGDGVTHVVPVVDGYVLP 167 (373)
T ss_pred cCCCcceEEEEECCEEch
Confidence 998875556678888763
No 110
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=92.01 E-value=12 Score=36.12 Aligned_cols=270 Identities=17% Similarity=0.174 Sum_probs=140.8
Q ss_pred EEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecC----CCCccccCHHH----HHHHHHHHHHHHHHHcCCCccc
Q 019144 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG----CSNHNSVGEDA----ARETIEKVMADALLKSGSNRSA 94 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~----~~~~~~~~~~~----~~~~l~~~i~~~~~~~~~~~~~ 94 (345)
.+|||+-.-+.|-+++++. +. +++-.... +......-|+. =.+.+..++++++.+++++.++
T Consensus 2 ~iLGIEtScDeT~vaIv~~---------~~-ilan~~~sq~~~h~~~GGVvPe~Asr~H~e~i~~li~~al~eA~~~~~d 71 (342)
T COG0533 2 IILGIETSCDETGVAIVDE---------EK-ILANVVASQIELHARYGGVVPELASRHHVENIPPLIEEALAEAGVSLED 71 (342)
T ss_pred eEEEEEcccccceeEEEec---------cC-hhheehhhcccccCCCCCcCccHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 6899999999999999996 33 55543321 11110112332 3677888899999999998888
Q ss_pred cceeEEe-ecCCCCh-hHHHHHHHHHHhhCCCCceEEEeCcHHHHHhccc--CC-CCCeEEEEeCccceeeeecCC-CCe
Q 019144 95 VRAVCLA-VSGVNHP-TDQQRILNWLRDIFPGNVRLYVHNDALAALASGT--MG-KLHGCVLIAGTGTIAYGFTED-GRD 168 (345)
Q Consensus 95 i~~Igig-~pG~~~~-~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~~--~g-~~~~v~v~~GTG~~g~gi~~d-G~~ 168 (345)
|.+|++. -||..-. --+....+.|.-.++ .|+.=.|.-.+=+++.. .+ ..+.+.+.+..|=--.-.+.+ |+.
T Consensus 72 ID~IA~T~gPGL~gaL~VG~~~Ak~LA~a~~--kPli~VnH~~gHi~a~~l~~~~~~p~v~LlVSGGHTqli~~~~~g~y 149 (342)
T COG0533 72 IDAIAVTAGPGLGGALLVGATAAKALALALN--KPLIPVNHLEGHIEAARLETGLAFPPVALLVSGGHTQLIAVRGIGRY 149 (342)
T ss_pred CCEEEEecCCCchhHHHHHHHHHHHHHHHhC--CCEeecchHHHHHHHHHhccCCCCCcEEEEEecCceEEEEEcCCCcE
Confidence 9988774 2555422 234567888888887 89888888875444322 12 335555444333111112233 554
Q ss_pred EEeccCCCCcCCcCcHHHHHHHHHHHHHHHhcCCC-CCChhHHHHHHHcCCCChhhHHHHhh----c---CCChHHHhcc
Q 019144 169 ARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRG-PDTMLTSNILSTLELSSPDELIGWTY----V---DPSWARIAAL 240 (345)
Q Consensus 169 ~~~Gg~G~~~gd~G~a~~iG~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~l~~~~~----~---~~~~~~~~~~ 240 (345)
-.-|+ +-|.. .++. ++.+-+. -|.. +..+. +++.....+... ....+ . +.+.+-+.
T Consensus 150 ~ilGe----TlDdA-~Gea----~DKvAR~-lGL~yPGGp~---Ie~lA~~G~~~~-~~fP~~~~~~~~~DfSFSGLk-- 213 (342)
T COG0533 150 EVLGE----TLDDA-AGEA----FDKVARL-LGLGYPGGPA---IEKLAKKGDPDA-FEFPRPMVKGKNLDFSFSGLK-- 213 (342)
T ss_pred EEEee----echhh-hhHH----HHHHHHH-hCCCCCCcHH---HHHHHhcCCCCc-eeCCccccCCCCcceehHhHH--
Confidence 33221 12222 2222 1111111 1111 12221 222111111111 11111 0 01111111
Q ss_pred hHHHHHHHHcCCH-----------HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHH
Q 019144 241 VPVVVSCAEAGDE-----------VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREV 309 (345)
Q Consensus 241 ~~~v~~~a~~gD~-----------~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~ 309 (345)
..+...++++.+ .|.+.=+.+...|.+-..-.+..+. ...++++||+..+.. |++.+
T Consensus 214 -Ta~~~~~~~~~~~~~~~~~d~~dia~sfQ~av~~~L~~kt~rAl~~~~--------~~~lvi~GGVaaN~~---LR~~l 281 (342)
T COG0533 214 -TAVLRLLKKLKQKEELNEEDKEDIAASFQEAVFDMLVEKTERALKHTG--------KKELVIAGGVAANSR---LREML 281 (342)
T ss_pred -HHHHHHHHhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCEEEEeccHHHhHH---HHHHH
Confidence 123333333322 5666666677777777777788888 478999999997642 46667
Q ss_pred HHHHHhhCCCceeeC------CCCChHHHHH
Q 019144 310 VKCILRDYPGAVPIR------PKVEPAVGAA 334 (345)
Q Consensus 310 ~~~l~~~~~~~~i~~------~~~a~~~GAa 334 (345)
++...++ ++++.. .+++.+++.+
T Consensus 282 ~~~~~~~--g~~~~~p~~~lCtDNaaMIA~a 310 (342)
T COG0533 282 EEMCKER--GAEVYIPPLELCTDNAAMIAYA 310 (342)
T ss_pred HHHHHhc--CCEEEcCChHhccchHHHHHHH
Confidence 6666533 334332 3566677654
No 111
>PLN02666 5-oxoprolinase
Probab=91.94 E-value=0.63 Score=52.53 Aligned_cols=55 Identities=18% Similarity=0.113 Sum_probs=35.6
Q ss_pred ccEEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHH
Q 019144 21 REVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADAL 85 (345)
Q Consensus 21 ~~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 85 (345)
..|.+|||+|||.|.++++|. ++.-+...+.+++++. ...+.+++-|.+++++++
T Consensus 8 ~~~rigIDvGGTFTD~v~~~~---------~~~~~~~~K~~sttp~-d~~~gv~~Gi~~~l~~~~ 62 (1275)
T PLN02666 8 RKFRFCIDRGGTFTDVYAEVP---------GGSDFRVLKLLSVDPA-NYDDAPREGIRRILEEVT 62 (1275)
T ss_pred CCEEEEEECCcCCEeEEEEec---------CCCeEEEEEeCCCCCC-ChhHHHHHHHHHHHHHHh
Confidence 359999999999999999987 4442333344442231 122457777777766654
No 112
>PRK13411 molecular chaperone DnaK; Provisional
Probab=91.89 E-value=19 Score=38.09 Aligned_cols=89 Identities=15% Similarity=0.004 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHHHHHHH-cCCCccccceeEEeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhcc-c-CC-
Q 019144 69 GEDAARETIEKVMADALLK-SGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASG-T-MG- 144 (345)
Q Consensus 69 ~~~~~~~~l~~~i~~~~~~-~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~-~-~g- 144 (345)
+|+++...+.+.+.+..++ .+ ..+..+.|++|-..+...+..+++.-+. -++ ..+.+-|+..+|+++- . ..
T Consensus 109 ~peei~a~iL~~lk~~ae~~lg---~~v~~~VITVPa~f~~~qR~a~~~Aa~~-AGl-~v~~li~EPtAAAl~y~~~~~~ 183 (653)
T PRK13411 109 TPQEISAMILQKLKQDAEAYLG---EPVTQAVITVPAYFTDAQRQATKDAGTI-AGL-EVLRIINEPTAAALAYGLDKQD 183 (653)
T ss_pred CHHHHHHHHHHHHHHHHHHHhC---CCcceEEEEECCCCCcHHHHHHHHHHHH-cCC-CeEEEecchHHHHHHhcccccC
Confidence 5666655554444443332 22 2477889999999876555555554433 332 4688999999887742 1 11
Q ss_pred -CCCeEEEEeCccceeeee
Q 019144 145 -KLHGCVLIAGTGTIAYGF 162 (345)
Q Consensus 145 -~~~~v~v~~GTG~~g~gi 162 (345)
....+++=+|.|..-..+
T Consensus 184 ~~~~vlV~DlGgGT~dvsi 202 (653)
T PRK13411 184 QEQLILVFDLGGGTFDVSI 202 (653)
T ss_pred CCCEEEEEEcCCCeEEEEE
Confidence 223455557766533333
No 113
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=91.51 E-value=1.2 Score=37.10 Aligned_cols=89 Identities=19% Similarity=0.212 Sum_probs=55.0
Q ss_pred EEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEeecC
Q 019144 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (345)
Q Consensus 25 lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~pG 104 (345)
||+|.|..+|=+++.|. .+.+ ++... + .........++.+.+.+++ . ++..|.||+|=
T Consensus 1 laiD~G~kriGvA~~d~---------~~~~-a~pl~-~--i~~~~~~~~~~~l~~~i~~----~-----~~~~iVvGlP~ 58 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDI---------TGWT-AQGIP-T--IKAQDGEPDWSRIEELLKE----W-----TPDKIVVGLPL 58 (130)
T ss_pred CeEccCCCeEEEEEECC---------CCCE-EeceE-E--EEecCCcHHHHHHHHHHHH----c-----CCCEEEEeccC
Confidence 58999999999999997 5543 32111 0 1001223344555554444 3 46788899885
Q ss_pred CC----ChhH--HHHHHHHHHhhCCCCceEEEeCcHHHH
Q 019144 105 VN----HPTD--QQRILNWLRDIFPGNVRLYVHNDALAA 137 (345)
Q Consensus 105 ~~----~~~~--~~~l~~~L~~~~~~~~pV~v~NDa~~a 137 (345)
-. ++.. ...+.+.|++.++ .||.+-+.-...
T Consensus 59 ~~dG~~~~~a~~v~~f~~~L~~~~~--~~v~~~DEr~TT 95 (130)
T TIGR00250 59 NMDGTEGPLTERAQKFANRLEGRFG--VPVVLWDERLST 95 (130)
T ss_pred CCCcCcCHHHHHHHHHHHHHHHHhC--CCEEEEcCCcCH
Confidence 43 2221 2478888988886 899888877644
No 114
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=90.31 E-value=5.2 Score=38.87 Aligned_cols=93 Identities=20% Similarity=0.257 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHc-CCCccccceeEEeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhcccCCCCCeEEEE
Q 019144 74 RETIEKVMADALLKS-GSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLI 152 (345)
Q Consensus 74 ~~~l~~~i~~~~~~~-~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~~~g~~~~v~v~ 152 (345)
++.+.+.++.++.+. ..++ .-..+.+..|...++.....+.+.|-+.++. ..|++.++..+++++ .+..++++|-
T Consensus 74 ~~~~e~~~~~~~~~~l~~~~-~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~-~~v~~~~~~~~a~~~--~g~~~~lVVD 149 (371)
T cd00012 74 WDDMEKIWDHLFFNELKVNP-EEHPVLLTEPPLNPKSNREKTTEIMFETFNV-PALYVAIQAVLSLYA--SGRTTGLVVD 149 (371)
T ss_pred HHHHHHHHHHHHHHhcCCCC-CCCceEEecCCCCCHHHHHHHHHHhhccCCC-CEEEEechHHHHHHh--cCCCeEEEEE
Confidence 455556666666543 2332 2346778888887766666788888888873 469999999999886 3456889999
Q ss_pred eCccceeeeecCCCCeEE
Q 019144 153 AGTGTIAYGFTEDGRDAR 170 (345)
Q Consensus 153 ~GTG~~g~gi~~dG~~~~ 170 (345)
+|.+..-...+.||.+..
T Consensus 150 iG~~~t~i~pv~~G~~~~ 167 (371)
T cd00012 150 SGDGVTHVVPVYDGYVLP 167 (371)
T ss_pred CCCCeeEEEEEECCEEch
Confidence 998875555678888753
No 115
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=90.05 E-value=6.3 Score=40.27 Aligned_cols=138 Identities=14% Similarity=0.088 Sum_probs=84.9
Q ss_pred cEEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCC---CccccC--HHHHHHHHHHHHHHHHHHcC-CCcccc
Q 019144 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS---NHNSVG--EDAARETIEKVMADALLKSG-SNRSAV 95 (345)
Q Consensus 22 ~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~---~~~~~~--~~~~~~~l~~~i~~~~~~~~-~~~~~i 95 (345)
.++-.||+|+.++++.+++..+. .-+++.+.+.... .....+ .++.++...+++++|.+... ...+++
T Consensus 6 ~~~A~IDIGSNSirL~I~~~~~~------~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~F~~~~~~~~v~~i 79 (496)
T PRK11031 6 SLYAAIDLGSNSFHMLVVREVAG------SIQTLARIKRKVRLAAGLDSDNALSNEAMERGWQCLRLFAERLQDIPPSQI 79 (496)
T ss_pred CEEEEEEccccceeEEEEEecCC------ceEEeecceeEEEccCCcCcCCCcCHHHHHHHHHHHHHHHHHHHhCCCCeE
Confidence 57899999999999999997210 1122222221110 010111 24677888888888776542 222334
Q ss_pred ceeEEeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHh---ccc--C-CCCCeEEEEeCccceeeeecCCCCeE
Q 019144 96 RAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALA---SGT--M-GKLHGCVLIAGTGTIAYGFTEDGRDA 169 (345)
Q Consensus 96 ~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~---~~~--~-g~~~~v~v~~GTG~~g~gi~~dG~~~ 169 (345)
. .++++-.=+......+.+.+++.++ .+|.|-+...=|-+ |.. . ..++.+++=+|.|+.-..+..++++.
T Consensus 80 ~--~vATsAvReA~N~~~fl~~i~~~tG--l~ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~ 155 (496)
T PRK11031 80 R--VVATATLRLAVNADEFLAKAQEILG--CPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQAT 155 (496)
T ss_pred E--EEEeHHHHcCcCHHHHHHHHHHHHC--CCeEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCcee
Confidence 3 5666666444445678899999998 89999998874422 221 1 22356788899898777666677654
No 116
>PRK13331 pantothenate kinase; Reviewed
Probab=89.44 E-value=16 Score=33.91 Aligned_cols=116 Identities=14% Similarity=-0.078 Sum_probs=66.9
Q ss_pred EEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEee
Q 019144 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~ 102 (345)
.+|.+|+|-|++++++++- .+++...+ +. .. ...+ +..++...++....|..+.++.
T Consensus 8 ~~L~iDiGNT~~~~g~f~~----------~~~~~~~r--t~-~~-~t~d---------~~~~l~~~~~~~~~i~~~iisS 64 (251)
T PRK13331 8 EWLALMIGNSRLHWGYFSG----------ETLVKTWD--TP-HL-DESI---------IQLLLPGQTLLIVAPNPLVIAS 64 (251)
T ss_pred cEEEEEeCCCcEEEEEEEC----------CEEEEEEE--cC-Cc-chHH---------HHHHHHHcCCCccccCEEEEEe
Confidence 7899999999999999985 35554333 22 21 2222 5666777777666787776665
Q ss_pred cCCCChhHHHHHHHHHHhhCCCCceE------------EEeCcHHHHHhcccC-CCCCeEEEEeCccceeeeecCCCCeE
Q 019144 103 SGVNHPTDQQRILNWLRDIFPGNVRL------------YVHNDALAALASGTM-GKLHGCVLIAGTGTIAYGFTEDGRDA 169 (345)
Q Consensus 103 pG~~~~~~~~~l~~~L~~~~~~~~pV------------~v~NDa~~a~~~~~~-g~~~~v~v~~GTG~~g~gi~~dG~~~ 169 (345)
.-+.... .+ ++.++. .|+ .+--|--+++++++. -..+.+++-+||=+---.+..+|+..
T Consensus 65 VVP~~~~---~~----~~~~~~-~~~~v~~~~l~~~yp~lG~DR~~~~vaA~~~~~~~~iVID~GTA~T~D~V~~~g~~~ 136 (251)
T PRK13331 65 VVPQQTE---LW----QTYPNV-RLITLDDIPLNNLYPTLGIDRALALWGAGQTYGFPCLVIDAGTALTFTGVDSDRTLV 136 (251)
T ss_pred cCccHHH---HH----HHhcCC-ceEEecCCCCccCCCCccHHHHHHHHHHHHHhCCCEEEEECCCceEEEEEcCCCcEE
Confidence 5332211 12 333331 222 333444444554321 13467888899987555455666665
No 117
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=89.05 E-value=9.3 Score=35.45 Aligned_cols=122 Identities=20% Similarity=0.146 Sum_probs=69.7
Q ss_pred EEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEeec
Q 019144 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (345)
Q Consensus 24 ~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~p 103 (345)
.|.+|+|-|++++++.+- +++....+..+... ...|++-..+. .++..+ ...++.++.|+..
T Consensus 2 ~L~iDiGNT~~~~a~~~~----------~~~~~~~r~~t~~~--~~~del~~~~~----~l~~~~--~~~~~~~~~issv 63 (251)
T COG1521 2 LLLIDIGNTRIVFALYEG----------GKVVQTWRLATEDL--LTEDELGLQLH----NLFDGN--SVRDIDGIVISSV 63 (251)
T ss_pred eEEEEeCCCeEEEEEecC----------CeEEEEEeeccccc--ccHHHHHHHHH----HHhccc--cccccccceeecc
Confidence 689999999999999983 67666666544322 34455544444 444333 3345667666433
Q ss_pred CCCChhHHHHHHHHHHhhCCCCceEEEeC-------------------cHHHHHhccc--CCCCCeEEEEeCccceeeee
Q 019144 104 GVNHPTDQQRILNWLRDIFPGNVRLYVHN-------------------DALAALASGT--MGKLHGCVLIAGTGTIAYGF 162 (345)
Q Consensus 104 G~~~~~~~~~l~~~L~~~~~~~~pV~v~N-------------------Da~~a~~~~~--~g~~~~v~v~~GTG~~g~gi 162 (345)
+ |.-...++..+++.|+. .|.++.+ |--+++++.. ++. ..++|-.||-+---.+
T Consensus 64 --v-p~~~~~~~~~~~~~f~~-~~~~~~~~~~~~g~~~~~~~p~elG~DR~~n~vaA~~~~~~-~~vVVD~GTA~Tid~v 138 (251)
T COG1521 64 --V-PPLGIFLEAVLKEYFKV-KPLVVISPKQLLGIRVLYDNPEELGADRIANAVAAYHKYGK-AVVVVDFGTATTIDLV 138 (251)
T ss_pred --C-ccHHHHHHHHHHHHhcc-CceeeechhhccCCcccCCChhhhcHHHHHHHHHHHHHcCC-cEEEEEcCCeEEEEEE
Confidence 3 44445677788888762 3432222 2222333332 233 3788889998754444
Q ss_pred cCCCCe
Q 019144 163 TEDGRD 168 (345)
Q Consensus 163 ~~dG~~ 168 (345)
..+|+.
T Consensus 139 ~~~~~~ 144 (251)
T COG1521 139 DEGGRY 144 (251)
T ss_pred cCCCcE
Confidence 444434
No 118
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=88.73 E-value=5.1 Score=34.17 Aligned_cols=99 Identities=13% Similarity=0.203 Sum_probs=45.0
Q ss_pred EEEEEecCcc----ceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCcccccee
Q 019144 23 VILGLDGGTT----STVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (345)
Q Consensus 23 ~~lgvDiG~t----~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~I 98 (345)
.++++-.|.. -+.++++|. +|+++...+...........++..+.+. +++.+.. ..-|
T Consensus 6 rVla~~~g~g~~~~~~~~v~ld~---------~G~v~d~~~~~~~~~~~~~~~~~~~~l~----~~i~~~k-----P~vI 67 (150)
T PF14639_consen 6 RVLALSWGSGDGDDAVFCVVLDE---------NGEVLDHLKLVYNERDRERKEEDMERLK----KFIEKHK-----PDVI 67 (150)
T ss_dssp -EEEEE-TT--TTS-EEEEEE-T---------TS-EEEEEEE-S-TT-SS-SHHHHHHHH----HHHHHH-------SEE
T ss_pred EEEEEEcCCCCCCCCEEEEEECC---------CCcEEEEEEEcCCccchHHHHHHHHHHH----HHHHHcC-----CeEE
Confidence 6777777744 588999999 9999998776221111122344455554 4444442 2344
Q ss_pred EEeecCCCChhHHHHHHHHHHhhC-----CCCceEEEeCcHHHHHhc
Q 019144 99 CLAVSGVNHPTDQQRILNWLRDIF-----PGNVRLYVHNDALAALAS 140 (345)
Q Consensus 99 gig~pG~~~~~~~~~l~~~L~~~~-----~~~~pV~v~NDa~~a~~~ 140 (345)
+||-.+.....-...+++.+++.- + .+||.+.||.-+-++.
T Consensus 68 ~v~g~~~~s~~l~~~v~~~v~~~~~~~~~~-~i~V~~v~~~~A~lY~ 113 (150)
T PF14639_consen 68 AVGGNSRESRKLYDDVRDIVEELDEDEQMP-PIPVVIVDDEVARLYS 113 (150)
T ss_dssp EE--SSTHHHHHHHHHHHHHHHTTB-TTS--B--EEE---TTHHHHH
T ss_pred EEcCCChhHHHHHHHHHHHHHHhhhcccCC-CceEEEECcHHHHHHh
Confidence 453222211112245666666543 2 2688888888777663
No 119
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=88.60 E-value=9.7 Score=36.08 Aligned_cols=136 Identities=17% Similarity=0.120 Sum_probs=81.5
Q ss_pred EEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCC---CccccC--HHHHHHHHHHHHHHHHHHcC-CCccccce
Q 019144 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS---NHNSVG--EDAARETIEKVMADALLKSG-SNRSAVRA 97 (345)
Q Consensus 24 ~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~---~~~~~~--~~~~~~~l~~~i~~~~~~~~-~~~~~i~~ 97 (345)
+-+||+|+.++++.+++..+ ...+++.+.+.+.. .....+ .++.++.+.++++++.+... ....++
T Consensus 2 ~AvIDiGSNsirl~I~~~~~------~~~~~l~~~~~~vrL~~~~~~~g~i~~e~i~~~~~~l~~f~~~~~~~~v~~i-- 73 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVE------GSLQVLFNEKEMVRLGEGLDSTGRLSEEAIERALEALKRFAELLRGFPVDEV-- 73 (300)
T ss_pred eEEEEecCCeeeEEEEEecC------CcEEEhhheeeeeecCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHhCCCCeE--
Confidence 45899999999999999721 01233333222111 010111 24567777788887776553 222233
Q ss_pred eEEeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHh---cc--cCCCCCeEEEEeCccceeeeecCCCCeE
Q 019144 98 VCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALA---SG--TMGKLHGCVLIAGTGTIAYGFTEDGRDA 169 (345)
Q Consensus 98 Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~---~~--~~g~~~~v~v~~GTG~~g~gi~~dG~~~ 169 (345)
..++++..=.......+.+.++++++ .++.|-+...=+.+ +. .....+.+++=+|.|+.-..+..++++.
T Consensus 74 ~~vaTsa~R~A~N~~~~~~~i~~~tg--i~i~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~ 148 (300)
T TIGR03706 74 RAVATAALRDAKNGPEFLREAEAILG--LPIEVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPG 148 (300)
T ss_pred EEEEcHHHHcCCCHHHHHHHHHHHHC--CCeEEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEe
Confidence 35677776433344568889999987 78888887763322 21 1223456788899998777666667664
No 120
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=87.97 E-value=3.2 Score=39.49 Aligned_cols=92 Identities=15% Similarity=0.180 Sum_probs=55.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCce
Q 019144 242 PVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAV 321 (345)
Q Consensus 242 ~~v~~~a~~gD~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~ 321 (345)
.++.+.+.. |+-|...++..+...++.++.+.-+ + .+ +..|+|.|.+.....+.++...+++.|. .++.
T Consensus 226 eE~~~~~~~-~e~~~lA~dal~~~vameIasLl~l-~-----~~-~~~IvLSGs~g~~r~~~~v~~~I~~~L~---~~V~ 294 (326)
T TIGR03281 226 EEILNNYNG-DEPGRLALDSLAMSVAMEIASLGLL-D-----CK-EAGVVLAGSGGTLREPINFSGKIKRVLS---CKVL 294 (326)
T ss_pred HHHHHHhcc-ChhHHHHHHHHHHHHHHHHHhheec-c-----CC-CCcEEEeCcchhccCchHHHHHHHHHhC---CCeE
Confidence 356677755 5557777788888888888776655 2 11 3479999993322222112444444443 2233
Q ss_pred eeCCCCChHHHHHHHHHHhhhccC
Q 019144 322 PIRPKVEPAVGAALLAWNSFMNAR 345 (345)
Q Consensus 322 i~~~~~a~~~GAa~la~~~~~~~~ 345 (345)
+.. ...++.|+|..|-.-+.+.|
T Consensus 295 ~L~-~ksAA~G~AiIA~dI~gGk~ 317 (326)
T TIGR03281 295 VLD-SESAAIGLALIAEDIFSGKR 317 (326)
T ss_pred Eec-chhhhhhHHHHHHHHhCCcc
Confidence 333 37888999999977665543
No 121
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=87.85 E-value=1.7 Score=46.02 Aligned_cols=50 Identities=16% Similarity=0.072 Sum_probs=34.9
Q ss_pred cEEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHH
Q 019144 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMAD 83 (345)
Q Consensus 22 ~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 83 (345)
.+.+|||.|||+|.++++|. ++.++...+.+++ ++ .+..+...+.+.+..
T Consensus 2 ~~~iGID~GGTfTDaV~~~~---------~~g~~~~~K~lTt-P~--~~~~~~~~~~~~~~~ 51 (674)
T COG0145 2 MLRIGIDVGGTFTDAVLLDE---------DGGVLATIKVLTT-PD--LPSGIVNAGIRLALE 51 (674)
T ss_pred ceEEEEEcCCCcEeEEEEeC---------CCCEEEEEEccCC-CC--chhhHHHHHHHHHhh
Confidence 48999999999999999998 5546777776665 43 444444444444443
No 122
>PLN02902 pantothenate kinase
Probab=87.82 E-value=46 Score=36.30 Aligned_cols=75 Identities=11% Similarity=-0.010 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCC-CceeeCC---CC
Q 019144 252 DEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYP-GAVPIRP---KV 327 (345)
Q Consensus 252 D~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~-~~~i~~~---~~ 327 (345)
...|+.++.-....+|..........+. .+||++|..+...+.- .+.+...+.=+.. ..+.... .+
T Consensus 320 eDiarSLL~mIs~NIGqiA~L~A~~~~i--------krIvF~G~fIr~h~~t--m~~ls~Ai~fwSkg~~~a~FlrHeGy 389 (876)
T PLN02902 320 EDISLSLLRMISYNIGQISYLNALRFGL--------KRIFFGGFFIRGHAYT--MDTISFAVHFWSKGEAQAMFLRHEGF 389 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC--------CEEEEecceecCCcch--HHHHHHHHHHhcCCceEEEEecccch
Confidence 4567788888888888777766777774 7899999999877653 6666666653222 2444443 46
Q ss_pred ChHHHHHHH
Q 019144 328 EPAVGAALL 336 (345)
Q Consensus 328 a~~~GAa~l 336 (345)
.+++||.+.
T Consensus 390 lGAlGafl~ 398 (876)
T PLN02902 390 LGALGAFMS 398 (876)
T ss_pred hHHHHHHhc
Confidence 677888643
No 123
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=87.55 E-value=16 Score=32.52 Aligned_cols=96 Identities=17% Similarity=0.125 Sum_probs=68.9
Q ss_pred EEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEeec
Q 019144 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (345)
Q Consensus 24 ~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~p 103 (345)
+|++|-.+..+.+++++. ++++....... ...--+.+...|++++++++.+..+|..|+++ -
T Consensus 1 iLaidTs~~~~sval~~~----------~~~~~~~~~~~-------~~~h~~~l~~~i~~~l~~~~~~~~~i~~iav~-~ 62 (202)
T TIGR03725 1 ILAIDTSTEALSVALLDD----------GEILAERSEEA-------GRNHSEILLPMIEELLAEAGLSLQDLDAIAVG-V 62 (202)
T ss_pred CEEEECCCcceEEEEEEC----------CEEEEEEeehh-------hHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEe-c
Confidence 478999999999999984 67776654321 12244677788889999999999999888775 4
Q ss_pred CCCChhH---HHHHHHHHHhhCCCCceEEEeCcHHHHHh
Q 019144 104 GVNHPTD---QQRILNWLRDIFPGNVRLYVHNDALAALA 139 (345)
Q Consensus 104 G~~~~~~---~~~l~~~L~~~~~~~~pV~v~NDa~~a~~ 139 (345)
||.+-+. ...+.+-|.-.++ .|++=-+--.+.+.
T Consensus 63 GPGSfTGlRig~~~akgla~~~~--~p~~~vssL~~lA~ 99 (202)
T TIGR03725 63 GPGSFTGLRIGLATAKGLALALG--IPLVGVSSLEALAA 99 (202)
T ss_pred CCChHHhHHHHHHHHHHHHHHhC--CCEEecCHHHHHHh
Confidence 6655433 3456777777776 89887777776554
No 124
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=87.40 E-value=3.1 Score=41.53 Aligned_cols=73 Identities=23% Similarity=0.303 Sum_probs=51.7
Q ss_pred EEEEEecCccceeeEEEcCccCCCCCCCCC--CeeEEEecCCCCc---cccCHHHHHHHHHHHHHHHHHHcCCCccccce
Q 019144 23 VILGLDGGTTSTVCICMPVISMSDSLPDPL--PVLARAAAGCSNH---NSVGEDAARETIEKVMADALLKSGSNRSAVRA 97 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g--~i~~~~~~~~~~~---~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~ 97 (345)
+++++|+|++++++.+.-+.+ ++ +++.....++... .=.+.+.+.+.+.++++++-..+|.+ +..
T Consensus 7 ~iv~LDIGTskV~~lVge~~~-------~g~i~iig~g~~~SrGik~G~I~di~~~~~sI~~av~~AE~mag~~---i~~ 76 (418)
T COG0849 7 LIVGLDIGTSKVKALVGELRP-------DGRLNIIGVGSHPSRGIKKGVIVDLDAAAQSIKKAVEAAERMAGCE---IKS 76 (418)
T ss_pred eEEEEEccCcEEEEEEEEEcC-------CCeEEEEeeecccCcccccceEEcHHHHHHHHHHHHHHHHHhcCCC---cce
Confidence 899999999999999977631 22 3333333222211 11467889999999999998888874 567
Q ss_pred eEEeecCC
Q 019144 98 VCLAVSGV 105 (345)
Q Consensus 98 Igig~pG~ 105 (345)
+.++++|-
T Consensus 77 v~vs~sG~ 84 (418)
T COG0849 77 VIVSLSGN 84 (418)
T ss_pred EEEEeccc
Confidence 88999993
No 125
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=87.08 E-value=16 Score=35.35 Aligned_cols=93 Identities=15% Similarity=0.148 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHcCCC-ccccceeEEeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhccc---CCCCCeEE
Q 019144 75 ETIEKVMADALLKSGSN-RSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGT---MGKLHGCV 150 (345)
Q Consensus 75 ~~l~~~i~~~~~~~~~~-~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~~---~g~~~~v~ 150 (345)
+....+++.++++.... ...--.+.+++|.-.+.-....+.+.+.+ .+ ...|++.-..-++++|.- ......++
T Consensus 72 ~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~~-aG-a~~V~li~ep~AaAiGaGl~i~~~~g~mi 149 (326)
T PF06723_consen 72 EAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAARQ-AG-ARKVYLIEEPIAAAIGAGLDIFEPRGSMI 149 (326)
T ss_dssp HHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHH-TT--SEEEEEEHHHHHHHHTT--TTSSS-EEE
T ss_pred HHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHH-cC-CCEEEEecchHHHHhcCCCCCCCCCceEE
Confidence 44455555555554322 11223578999999887777777777765 44 268999999999888742 22345677
Q ss_pred EEeCccceeeeecCCCCeE
Q 019144 151 LIAGTGTIAYGFTEDGRDA 169 (345)
Q Consensus 151 v~~GTG~~g~gi~~dG~~~ 169 (345)
|-+|.|..-.+++..|.+.
T Consensus 150 VDIG~GtTdiavislggiv 168 (326)
T PF06723_consen 150 VDIGGGTTDIAVISLGGIV 168 (326)
T ss_dssp EEE-SS-EEEEEEETTEEE
T ss_pred EEECCCeEEEEEEECCCEE
Confidence 7788887666777666664
No 126
>PF13941 MutL: MutL protein
Probab=86.93 E-value=2.4 Score=42.69 Aligned_cols=57 Identities=12% Similarity=0.137 Sum_probs=42.9
Q ss_pred EEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCC
Q 019144 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGS 90 (345)
Q Consensus 24 ~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 90 (345)
+|.+|+|+|.||+.++|.. .++.+++++...+++-. ++.+..-+.++++++.++.+.
T Consensus 2 ~L~~DiGST~Tk~~l~d~~------~~~~~~ig~a~apTTv~----~~Dv~~G~~~A~~~l~~~~~~ 58 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLV------DGEPRLIGQAEAPTTVE----PGDVTIGLNNALEQLEEQTPA 58 (457)
T ss_pred EEEEEeCCcceEEeEEecc------CCccEEEEEEeCCCCcC----cccHHHHHHHHHHHHHHhcCC
Confidence 6899999999999999931 12789999998877631 245777777777777776653
No 127
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=86.90 E-value=2.3 Score=39.35 Aligned_cols=92 Identities=16% Similarity=0.209 Sum_probs=64.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCce
Q 019144 242 PVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAV 321 (345)
Q Consensus 242 ~~v~~~a~~gD~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~ 321 (345)
+.+++.+.+|.. |+-.++..+...+..|+.+..+..- -..+++.|++...-.++++...++..+.+. +
T Consensus 232 EEli~~~~k~ek-arlaldtlal~vamEIagL~~~~~~-------~d~v~laGsvg~~~ep~dv~~ri~~~v~~k---~- 299 (332)
T COG4020 232 EELIQRYGKGEK-ARLALDTLALLVAMEIAGLLMVVYG-------CDGVVLAGSVGGDREPMDVLKRIKSKVFNK---V- 299 (332)
T ss_pred HHHHHHhcCChh-hhHHHHHHHHHHHHHHhhhhceecC-------CceEEEecccccccchhhHHHHHHHHHHHH---H-
Confidence 567777777766 8999999999999999987755542 356999999987755553455565555543 1
Q ss_pred eeCCCCChHHHHHHHHHHhhhccC
Q 019144 322 PIRPKVEPAVGAALLAWNSFMNAR 345 (345)
Q Consensus 322 i~~~~~a~~~GAa~la~~~~~~~~ 345 (345)
.+...+..++|-|.+|.+-..+.|
T Consensus 300 ~~l~~esaaiG~a~IA~DI~~Gkr 323 (332)
T COG4020 300 AVLPPESAAIGLALIARDIASGKR 323 (332)
T ss_pred hhcCchhhhhhhHHHHHHHHcCcc
Confidence 122345688999999987666554
No 128
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=84.85 E-value=4.5 Score=35.30 Aligned_cols=75 Identities=20% Similarity=0.191 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCChHHH
Q 019144 253 EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVG 332 (345)
Q Consensus 253 ~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~i~~~~~a~~~G 332 (345)
..++.+++-.+..+-..+..+-.... ..+..|++.||.... +.| .+.+-..+.. ++.+.....++++|
T Consensus 122 ~~~rAv~Egia~~~~~~~~~l~~~~~------~~~~~i~~~GG~~~n-~~~--~q~~Advl~~---~V~~~~~~e~~a~G 189 (198)
T PF02782_consen 122 DLARAVLEGIAFSLRQILEELEELTG------IPIRRIRVSGGGAKN-PLW--MQILADVLGR---PVVRPEVEEASALG 189 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT------SCESEEEEESGGGGS-HHH--HHHHHHHHTS---EEEEESSSTHHHHH
T ss_pred HHHHHHHHhHHHHHHHhhhhcccccc------ccceeeEeccccccC-hHH--HHHHHHHhCC---ceEeCCCCchHHHH
Confidence 44556666666666666655544422 136889999998843 433 4444444432 24444457889999
Q ss_pred HHHHHHH
Q 019144 333 AALLAWN 339 (345)
Q Consensus 333 Aa~la~~ 339 (345)
||++|.-
T Consensus 190 aA~~A~~ 196 (198)
T PF02782_consen 190 AALLAAV 196 (198)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999863
No 129
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=84.07 E-value=0.91 Score=36.96 Aligned_cols=93 Identities=15% Similarity=0.132 Sum_probs=42.1
Q ss_pred EEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCC-c-cccCHHHHH--HHHHHHHHHHHHHcCCC-cccccee
Q 019144 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN-H-NSVGEDAAR--ETIEKVMADALLKSGSN-RSAVRAV 98 (345)
Q Consensus 24 ~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~-~-~~~~~~~~~--~~l~~~i~~~~~~~~~~-~~~i~~I 98 (345)
+++||+|+++|+++++.. +....-...+... + .-.....+. +.+.+.++..++++-.. ..++..+
T Consensus 1 i~~iDiGs~~~~~~i~~~----------~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~a~~~AE~~~k~~i~~v 70 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAED----------GSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIKIAIEEAERLAKCEIGSV 70 (120)
T ss_dssp EEEEEE-SSSEEEEEEET----------TEEEEEEEES----------HHHHH--HHHHHHHT--HHHHHHH-HHHH--S
T ss_pred CEEEEcCCCcEEEEEEEe----------CCCCcEEEEEEecccccccCCCEEEEHHHHHHHHHHHHHHHHHHhCCeeeEE
Confidence 578999999999999986 2222222222110 0 001133344 44444444444443211 1234444
Q ss_pred EEeecCCCChhHHHHHHHHHHhhCCCCceEEEeC
Q 019144 99 CLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHN 132 (345)
Q Consensus 99 gig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~N 132 (345)
.+++++ .....|.+.+++.++ .|+.+.+
T Consensus 71 ~v~~g~----s~l~~i~~~~~~~~~--~~v~v~~ 98 (120)
T PF14450_consen 71 YVSIGG----SKLQNIEELIEKCGG--MPVRVAG 98 (120)
T ss_dssp --TTGG----GGSTTHHHHHHHHHT--S-EEE--
T ss_pred EecCch----hHHHhHHHHHHHhCC--CcEEEcc
Confidence 444411 122357888888887 7899988
No 130
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=83.98 E-value=41 Score=32.26 Aligned_cols=72 Identities=13% Similarity=0.149 Sum_probs=48.0
Q ss_pred eeEEeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhccc-C--CCCCeEEEEeCccceeeeecCCCCeEE
Q 019144 97 AVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGT-M--GKLHGCVLIAGTGTIAYGFTEDGRDAR 170 (345)
Q Consensus 97 ~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~~-~--g~~~~v~v~~GTG~~g~gi~~dG~~~~ 170 (345)
.+.|++|-..+...+..+.+..+. ++. ..+++.|+..+++++.. . .....+++-+|.|..-..++..|.+..
T Consensus 100 ~vvitvP~~~~~~~R~~l~~a~~~-ag~-~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~~ 174 (335)
T PRK13929 100 NVVVCTPSGSTAVERRAISDAVKN-CGA-KNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVVS 174 (335)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHH-cCC-CeeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCeEEEEEEEeCCEEE
Confidence 577899987776666667775544 442 46899999999887631 1 233467777888876666664555543
No 131
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=83.62 E-value=4.7 Score=36.23 Aligned_cols=132 Identities=17% Similarity=0.116 Sum_probs=70.6
Q ss_pred cEEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEec----CCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccce
Q 019144 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAA----GCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRA 97 (345)
Q Consensus 22 ~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~----~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~ 97 (345)
...+|+|+|+.++...++|- ++..++-... -..... .+.-+.++.+.++.+.+-++.|+.... +
T Consensus 29 k~~vGVDLGT~~iV~~vlD~---------d~~Pvag~~~~advVRDGiV-vdf~eaveiVrrlkd~lEk~lGi~~th--a 96 (277)
T COG4820 29 KLWVGVDLGTCDIVSMVLDR---------DGQPVAGCLDWADVVRDGIV-VDFFEAVEIVRRLKDTLEKQLGIRFTH--A 96 (277)
T ss_pred ceEEEeecccceEEEEEEcC---------CCCeEEEEehhhhhhccceE-EehhhHHHHHHHHHHHHHHhhCeEeee--c
Confidence 48999999999999999998 7776664321 011111 234455666666666655555543221 1
Q ss_pred eEEeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhcccCCCCCeEEEEeCccceeeeecCCCCeEE
Q 019144 98 VCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIAGTGTIAYGFTEDGRDAR 170 (345)
Q Consensus 98 Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~~~g~~~~v~v~~GTG~~g~gi~~dG~~~~ 170 (345)
-+-=-||....+-+ -....|+.. +. ...++-..-.+++. ..+-+|+.++=+|.|.-|..|+.+|++..
T Consensus 97 ~taiPPGt~~~~~r-i~iNViESA-Gl-evl~vlDEPTAaa~--vL~l~dg~VVDiGGGTTGIsi~kkGkViy 164 (277)
T COG4820 97 ATAIPPGTEQGDPR-ISINVIESA-GL-EVLHVLDEPTAAAD--VLQLDDGGVVDIGGGTTGISIVKKGKVIY 164 (277)
T ss_pred cccCCCCccCCCce-EEEEeeccc-Cc-eeeeecCCchhHHH--HhccCCCcEEEeCCCcceeEEEEcCcEEE
Confidence 11112344321111 112233332 10 12222222222221 12346788888888887888999999875
No 132
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=82.10 E-value=31 Score=33.54 Aligned_cols=93 Identities=17% Similarity=0.178 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHc-CCCccccceeEEeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhcccCCCCCeEEEE
Q 019144 74 RETIEKVMADALLKS-GSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLI 152 (345)
Q Consensus 74 ~~~l~~~i~~~~~~~-~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~~~g~~~~v~v~ 152 (345)
|+.+.++++.++.+. ..++ .-..+-+..|-...+.....+.+.|-+.|+. ..+++.+++.+++++ .+..++++|-
T Consensus 73 ~~~~e~i~~~~~~~~l~~~~-~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~-~~v~~~~~~~~a~~~--~g~~tglVVD 148 (393)
T PF00022_consen 73 WDALEEIWDYIFSNLLKVDP-SDHPVLLTEPPFNPRSQREKLAEILFEKFGV-PSVYFIPSPLLALYA--SGRTTGLVVD 148 (393)
T ss_dssp HHHHHHHHHHHHHTTT-SSG-GGSEEEEEESTT--HHHHHHHHHHHHHTS---SEEEEEEHHHHHHHH--TTBSSEEEEE
T ss_pred cccccccccccccccccccc-ccceeeeeccccCCchhhhhhhhhhhccccc-ceeeeeecccccccc--cccccccccc
Confidence 556666777777653 3333 2346777777776666667788899899973 459999999998886 3556899999
Q ss_pred eCccceeeeecCCCCeEE
Q 019144 153 AGTGTIAYGFTEDGRDAR 170 (345)
Q Consensus 153 ~GTG~~g~gi~~dG~~~~ 170 (345)
+|....-..-+.||.+..
T Consensus 149 ~G~~~t~v~pV~dG~~~~ 166 (393)
T PF00022_consen 149 IGYSSTSVVPVVDGYVLP 166 (393)
T ss_dssp ESSS-EEEEEEETTEE-G
T ss_pred cceeeeeeeeeeeccccc
Confidence 998864444578898753
No 133
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=81.76 E-value=49 Score=31.50 Aligned_cols=65 Identities=14% Similarity=0.127 Sum_probs=40.6
Q ss_pred eeEEeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhcccC---CCCCeEEEEeCccceeeeec
Q 019144 97 AVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---GKLHGCVLIAGTGTIAYGFT 163 (345)
Q Consensus 97 ~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~~~---g~~~~v~v~~GTG~~g~gi~ 163 (345)
.+.+++|-..+......+...++ .++. ..+++.|+..+++++... .....+++=+|.|..-..++
T Consensus 98 ~~vi~vP~~~~~~~r~~~~~a~~-~ag~-~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiGggttdvs~v 165 (334)
T PRK13927 98 RVVICVPSGITEVERRAVRESAL-GAGA-REVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEVAVI 165 (334)
T ss_pred cEEEEeCCCCCHHHHHHHHHHHH-HcCC-CeeccCCChHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEE
Confidence 57788896555444444554443 4442 468999999988875321 12335777788887655565
No 134
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=80.83 E-value=30 Score=30.75 Aligned_cols=120 Identities=19% Similarity=0.149 Sum_probs=61.1
Q ss_pred EEEEecCccceeeEEEcCccCCCCCCCCCCeeE-EEec--CCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEE
Q 019144 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLA-RAAA--GCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL 100 (345)
Q Consensus 24 ~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~-~~~~--~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igi 100 (345)
+|.||+|-|++|+++++. + +++. ..+. .+. .. ...+++. ..+.+.+++... ..+.+
T Consensus 1 ~L~iDiGNT~ik~~~~~~---------~-~~~~~~~~~~~~~~-~~-~~~~~~~----~~~~~~~~~~~~-----~~v~i 59 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDG---------D-KLIDPSGRISHSTA-LD-SSSDELL----ELLESLLPQPKI-----DAVII 59 (206)
T ss_dssp EEEEEE-SSEEEEEEEET---------T-EEEE-EEEE-EEEC-TT-SSHHHHH----HHHHHHHHCTTC-----GEEEE
T ss_pred CEEEEECCCeEEEEEEEC---------C-EEEeeeeEEEeccc-cc-ccHHHHH----HHHHHHhccccC-----CcEEE
Confidence 588999999999999986 3 4333 2222 111 11 2344443 334455554332 24444
Q ss_pred eecCCCChhHHHHHHHHHHhhCCCCceEEEeC-------------------cHHHHHhcccC-CCCCeEEEEeCccceee
Q 019144 101 AVSGVNHPTDQQRILNWLRDIFPGNVRLYVHN-------------------DALAALASGTM-GKLHGCVLIAGTGTIAY 160 (345)
Q Consensus 101 g~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~N-------------------Da~~a~~~~~~-g~~~~v~v~~GTG~~g~ 160 (345)
+...+ .....+.+.+.+.++ .|.++.+ |--++++++.. -.++.+++-+||=+.--
T Consensus 60 sSV~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~y~~p~~LG~DR~~~~~aa~~~~~~~~lViD~GTA~Tid 134 (206)
T PF03309_consen 60 SSVVP---EATEQLLEALLKRFG--RPHFVKSSASKLGLKNAYDNPSQLGVDRWAAAIAARKLYGQPCLVIDAGTATTID 134 (206)
T ss_dssp EESSG---HHHHHHHHHHHHHCS----EEES-TTSCCSSEESSSSGGGS-HHHHHHHHHHHHHHTSSEEEEEESSEEEEE
T ss_pred EEcCC---HHHHHHHHHHHHHhC--CCEEEEccccccCccccCCChhHhhHHHHHHHHHHHHhcCCCEEEEEcCCeEEEE
Confidence 43333 222344555555543 2333331 11233343321 14578999999998655
Q ss_pred eecCCCCeE
Q 019144 161 GFTEDGRDA 169 (345)
Q Consensus 161 gi~~dG~~~ 169 (345)
.+..+|+..
T Consensus 135 ~v~~~g~~~ 143 (206)
T PF03309_consen 135 VVDADGQHL 143 (206)
T ss_dssp EEETTSEEE
T ss_pred EEcCCCeEE
Confidence 555567654
No 135
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=80.09 E-value=30 Score=31.36 Aligned_cols=100 Identities=17% Similarity=0.086 Sum_probs=74.1
Q ss_pred EEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEee
Q 019144 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~ 102 (345)
++|++|-.+....+++++.+ +++++......... .--+++...+++++.+++....++.+|.++.
T Consensus 2 ~iLaiDTs~~~~s~ai~~~~--------~~~vl~~~~~~~~r-------~hse~l~~~i~~ll~~~~~~~~dld~iav~~ 66 (220)
T COG1214 2 KILAIDTSTSALSVALYLAD--------DGKVLAEHTEKLKR-------NHAERLMPMIDELLKEAGLSLQDLDAIAVAK 66 (220)
T ss_pred cEEEEEcChhhhhhheeecC--------CCcEEEEEEEeccc-------cHHHHHHHHHHHHHHHcCCCHHHCCEEEEcc
Confidence 68999999999998887753 68888887654321 1246788888999999998888898888874
Q ss_pred cCCCChh---HHHHHHHHHHhhCCCCceEEEeCcHHHHHhc
Q 019144 103 SGVNHPT---DQQRILNWLRDIFPGNVRLYVHNDALAALAS 140 (345)
Q Consensus 103 pG~~~~~---~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~ 140 (345)
||.+-+ -+..+.+-|.-.++ .|++--|--.+.+..
T Consensus 67 -GPGSFTGlRIG~~~AkgLA~~l~--iplvgvssL~~~A~~ 104 (220)
T COG1214 67 -GPGSFTGLRIGVAFAKGLALALN--IPLVGVSSLEALAQG 104 (220)
T ss_pred -CCCcccchhhHHHHHHHHHHHcC--CCEEEeCHHHHHHHh
Confidence 443322 24566777877777 899888888877664
No 136
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=79.30 E-value=59 Score=30.89 Aligned_cols=74 Identities=12% Similarity=0.117 Sum_probs=49.9
Q ss_pred cceeEEeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhcccC---CCCCeEEEEeCccceeeeecCCCCeEE
Q 019144 95 VRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM---GKLHGCVLIAGTGTIAYGFTEDGRDAR 170 (345)
Q Consensus 95 i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~~~---g~~~~v~v~~GTG~~g~gi~~dG~~~~ 170 (345)
...+.+++|-..+......+.+.++ .++. ..+++.|...+++++... ....++++-+|.|..-..++.+|.+..
T Consensus 100 ~~~vvit~P~~~~~~~r~~~~~~~e-~~g~-~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs~v~~g~~~~ 176 (335)
T PRK13930 100 KPRIVICVPSGITEVERRAVREAAE-HAGA-REVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGGIVY 176 (335)
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHH-HcCC-CeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEEEEEeCCEEe
Confidence 4567889998876655556666554 4552 468899999988775321 123467788888876666777777654
No 137
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=77.75 E-value=26 Score=35.81 Aligned_cols=136 Identities=15% Similarity=0.134 Sum_probs=80.7
Q ss_pred cEEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecC------CCCccccCHHHHHHHHHHHHHHHHHHcC-CCccc
Q 019144 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG------CSNHNSVGEDAARETIEKVMADALLKSG-SNRSA 94 (345)
Q Consensus 22 ~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~------~~~~~~~~~~~~~~~l~~~i~~~~~~~~-~~~~~ 94 (345)
..+.+||+|+.++++.+++..+ ..-+++.+.+.. ..+.... .++.+++..++++.+.+... .+..+
T Consensus 3 ~~~A~IDiGSNS~rlvV~~~~~------~~~~~l~~~k~~vrLgegl~~~g~L-~~eai~R~~~aL~~f~e~~~~~~~~~ 75 (492)
T COG0248 3 RRVAAIDLGSNSFRLVVAEITP------GSFQVLFREKRIVRLGEGLDATGNL-SEEAIERALSALKRFAELLDGFGAEE 75 (492)
T ss_pred ceEEEEEecCCeEEEEEEeccC------CccchhhhhhhheehhcCccccCCc-CHHHHHHHHHHHHHHHHHHhhCCCCE
Confidence 3788999999999999999621 022333322211 1111112 35577777777777766543 33334
Q ss_pred cceeEEeecCCCChhHHHHHHHHHHhhCCCCceEEEeC---cHHHHHhcc--cCC-CCCeEEEEeCccceeeeecCCCCe
Q 019144 95 VRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHN---DALAALASG--TMG-KLHGCVLIAGTGTIAYGFTEDGRD 168 (345)
Q Consensus 95 i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~N---Da~~a~~~~--~~g-~~~~v~v~~GTG~~g~gi~~dG~~ 168 (345)
|. .|+++-+=+......+....++.++ .|+.|-. .|....+|. ..+ ..+++++=+|.||--..+..+.++
T Consensus 76 v~--~vATsA~R~A~N~~eFl~rv~~~~G--~~ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~~~~~ 151 (492)
T COG0248 76 VR--VVATSALRDAPNGDEFLARVEKELG--LPIEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGDNFEI 151 (492)
T ss_pred EE--EehhHHHHcCCCHHHHHHHHHHHhC--CceEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEecCCcc
Confidence 43 4555555222233467888889998 7888744 444555543 233 668889999999876655444443
No 138
>PTZ00452 actin; Provisional
Probab=77.32 E-value=51 Score=32.27 Aligned_cols=92 Identities=21% Similarity=0.301 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHH-HcCCCccccceeEEeecCCCChhHHHHHHHHHHhhCCCCce-EEEeCcHHHHHhcccCCCCCeEEE
Q 019144 74 RETIEKVMADALL-KSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVR-LYVHNDALAALASGTMGKLHGCVL 151 (345)
Q Consensus 74 ~~~l~~~i~~~~~-~~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~p-V~v~NDa~~a~~~~~~g~~~~v~v 151 (345)
|+.+...++..+. +..+++.. ..+-+.-|-...+..+..+.+.|-|.|+ .| +++.+++.+++++ .|..++++|
T Consensus 79 wd~~e~iw~~~f~~~l~v~p~~-~pvlitE~~~~~~~~Re~l~eilFE~~~--vp~~~~~~~~~lslya--~g~~tglVV 153 (375)
T PTZ00452 79 WDDIEIIWHHAFYNELCMSPED-QPVFMTDAPMNSKFNRERMTQIMFETFN--TPCLYISNEAVLSLYT--SGKTIGLVV 153 (375)
T ss_pred HHHHHHHHHHHHHhhcCCCccc-CceeeecCCCCCHHHHHHHHHHHhhccC--CceEEEechHHHHHHH--CCCceeeee
Confidence 4555555555543 23444432 2444554545555566788889989997 54 8899999999886 355688999
Q ss_pred EeCccceeeeecCCCCeEE
Q 019144 152 IAGTGTIAYGFTEDGRDAR 170 (345)
Q Consensus 152 ~~GTG~~g~gi~~dG~~~~ 170 (345)
=+|.+..-..-+.||.+..
T Consensus 154 DiG~~~t~v~PV~dG~~l~ 172 (375)
T PTZ00452 154 DSGEGVTHCVPVFEGHQIP 172 (375)
T ss_pred cCCCCcceEEEEECCEEec
Confidence 9998864444467887653
No 139
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=76.35 E-value=9.9 Score=36.49 Aligned_cols=75 Identities=19% Similarity=0.230 Sum_probs=42.5
Q ss_pred cEEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCC-ccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEE
Q 019144 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSN-HNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL 100 (345)
Q Consensus 22 ~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~-~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igi 100 (345)
..++|||+|.++++++.+...+ ..-++......+.+. ....+.-.-.+.+.+.+++++++.+.+ ...+.+
T Consensus 3 ~~~vgiDIg~~~Ik~v~~~~~~------~~~~v~~~~~~~~p~~~i~~g~i~d~~~~~~~l~~~~~~~~~~---~k~v~~ 73 (348)
T TIGR01175 3 SLLVGIDIGSTSVKVAQLKRSG------DRYKLEHYAVEPLPAGIFTEGHIVEYQAVAEALKELLSELGIN---TKKAAT 73 (348)
T ss_pred CcEEEEEeccCeEEEEEEEecC------CceEEEEEEEEECCCCcccCCCccCHHHHHHHHHHHHHHcCCC---cceEEE
Confidence 4789999999999999987521 022333333333221 111111111345566677777776653 345677
Q ss_pred eecCC
Q 019144 101 AVSGV 105 (345)
Q Consensus 101 g~pG~ 105 (345)
++||.
T Consensus 74 alp~~ 78 (348)
T TIGR01175 74 AVPGS 78 (348)
T ss_pred EecCC
Confidence 88884
No 140
>PTZ00466 actin-like protein; Provisional
Probab=73.99 E-value=64 Score=31.70 Aligned_cols=93 Identities=20% Similarity=0.257 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHcCCCccccceeEEeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhcccCCCCCeEEEEe
Q 019144 74 RETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLIA 153 (345)
Q Consensus 74 ~~~l~~~i~~~~~~~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~~~g~~~~v~v~~ 153 (345)
|+.+..+.+.++++..+++.. ..|-+.-|-...+..+..+.+.|-|.|+. ..+++.+++.+++++ .|..++++|-+
T Consensus 86 wd~~e~iw~~~f~~l~v~~~~-~pvllte~~~~~~~~re~~~e~lFE~~~~-p~~~~~~~~~lsl~a--~g~~tglVVD~ 161 (380)
T PTZ00466 86 WNDMENIWIHVYNSMKINSEE-HPVLLTEAPLNPQKNKEKIAEVFFETFNV-PALFISIQAILSLYS--CGKTNGTVLDC 161 (380)
T ss_pred HHHHHHHHHHHHhhcccCCcc-CeEEEecCccccHHHHHHHHHHHhccCCC-CeEEEecchHHHHHh--cCCceEEEEeC
Confidence 445555555555545544432 23445445444444556788888888872 348999999999886 35568999999
Q ss_pred CccceeeeecCCCCeEE
Q 019144 154 GTGTIAYGFTEDGRDAR 170 (345)
Q Consensus 154 GTG~~g~gi~~dG~~~~ 170 (345)
|.+..-..-+.||.+..
T Consensus 162 G~~~t~v~PV~~G~~~~ 178 (380)
T PTZ00466 162 GDGVCHCVSIYEGYSIT 178 (380)
T ss_pred CCCceEEEEEECCEEee
Confidence 98864443467887763
No 141
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=73.92 E-value=93 Score=30.44 Aligned_cols=90 Identities=17% Similarity=0.166 Sum_probs=61.6
Q ss_pred EEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCC---------CccccCHHHHHHHHHHHHHHHHHHcCCCccc
Q 019144 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCS---------NHNSVGEDAARETIEKVMADALLKSGSNRSA 94 (345)
Q Consensus 24 ~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~---------~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~ 94 (345)
+|||+-.=+-|.++++|. .+++++......+ .+. .-.+.=.+.|..++++++..++..+.+
T Consensus 34 VLgIETSCDDTavaVVd~---------~~~~~~~~i~~~t~~~~~yGGI~P~-~a~~~Hr~ni~~~iqral~aa~~~p~d 103 (405)
T KOG2707|consen 34 VLGIETSCDDTAVAVVDE---------FSHVLSSEIYSRTEIHRQYGGIIPT-VAQLLHRENIPRLIQRALDAAGLSPKD 103 (405)
T ss_pred eeeEecccCcceeeeecc---------cccccchhhhhhhHHHHhhCCCCCh-HHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 999999999999999998 7887776332111 010 112334678889999999999999988
Q ss_pred cceeEEee-cCCC-ChhHHHHHHHHHHhhCC
Q 019144 95 VRAVCLAV-SGVN-HPTDQQRILNWLRDIFP 123 (345)
Q Consensus 95 i~~Igig~-pG~~-~~~~~~~l~~~L~~~~~ 123 (345)
+.+|++.. ||.. +-..+..+..-|...+.
T Consensus 104 ldaIAVT~gPGl~lsL~vGl~fA~glA~~l~ 134 (405)
T KOG2707|consen 104 LDAIAVTRGPGLPLSLKVGLSFAKGLAVKLQ 134 (405)
T ss_pred ceeEEEecCCCceeehhhhHHHHHHHHHhcc
Confidence 98887753 5553 22334455566666664
No 142
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=73.48 E-value=7.1 Score=37.55 Aligned_cols=71 Identities=20% Similarity=0.205 Sum_probs=42.8
Q ss_pred EEEEEecCccceeeEEEcCccCCCCCCCCCCeeE---EEecCC-CCccccCHHHHHHHHHHHHHHHHHHcCCCcccccee
Q 019144 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLA---RAAAGC-SNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAV 98 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~---~~~~~~-~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~I 98 (345)
..+|||||.+++|++-..- .|+-.. ....+. .+....+.-.=.+.+.+.+++++.+++++..+ +
T Consensus 11 ~~vGIdI~~~sVKvvqLs~---------~g~~~kLe~y~~~~lp~~iv~dg~ivd~~av~~~Lk~ala~~gi~~k~---a 78 (354)
T COG4972 11 AAVGIDIGSHSVKVVQLSR---------SGNRYKLEKYASEPLPENIVADGKIVDYDAVASALKRALAKLGIKSKN---A 78 (354)
T ss_pred ceeeEeeccceEEEEEEcc---------cCCceeeeeeeecccCccccccCCcccHHHHHHHHHHHHHhcCcchhh---h
Confidence 6899999999999888773 233222 222222 12211111112456777788888888876543 4
Q ss_pred EEeecCC
Q 019144 99 CLAVSGV 105 (345)
Q Consensus 99 gig~pG~ 105 (345)
..++||-
T Consensus 79 a~AVP~s 85 (354)
T COG4972 79 ATAVPGS 85 (354)
T ss_pred hhhcCcc
Confidence 5677885
No 143
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=72.62 E-value=82 Score=29.23 Aligned_cols=49 Identities=14% Similarity=0.096 Sum_probs=30.1
Q ss_pred EEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHH
Q 019144 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADAL 85 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~ 85 (345)
+-++||+|||-.|++--.. .-+-+.-....+ ...|.+++.+..++++--
T Consensus 19 ~~vaiDiGGtLaKvv~sp~---------~snrl~F~t~eT-----~kId~~ve~l~~li~~h~ 67 (342)
T COG5146 19 MKVAIDIGGTLAKVVQSPS---------QSNRLTFKTEET-----KKIDQVVEWLNNLIQQHE 67 (342)
T ss_pred EEEEEecCceeeeeeeCcc---------cccceeeehHhh-----hhHHHHHHHHHHHHHHHH
Confidence 6799999999999887554 222222222222 234667777776666643
No 144
>PTZ00004 actin-2; Provisional
Probab=70.52 E-value=88 Score=30.57 Aligned_cols=93 Identities=17% Similarity=0.219 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHH-HcCCCccccceeEEeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhcccCCCCCeEEEE
Q 019144 74 RETIEKVMADALL-KSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLI 152 (345)
Q Consensus 74 ~~~l~~~i~~~~~-~~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~~~g~~~~v~v~ 152 (345)
|+.+.++++..+. +...++. -..|-+.-|-...+..+..+.+.|-|.|+. ..+++.+++.+++++ .+..++++|-
T Consensus 80 ~d~~e~i~~~~~~~~l~v~~~-~~pvllte~~~~~~~~r~~~~e~lFE~~~~-~~~~~~~~~~ls~ya--~g~~tglVVD 155 (378)
T PTZ00004 80 WDDMEKIWHHTFYNELRVAPE-EHPVLLTEAPLNPKANREKMTQIMFETHNV-PAMYVAIQAVLSLYA--SGRTTGIVLD 155 (378)
T ss_pred HHHHHHHHHHHHHhhcccCCc-cCcceeecCCCCcHHHHHHHHHHHHhhcCC-ceEEeeccHHHHHHh--cCCceEEEEE
Confidence 4444444444332 2333332 234555555555555566788888888873 348899999999886 3456889999
Q ss_pred eCccceeeeecCCCCeEE
Q 019144 153 AGTGTIAYGFTEDGRDAR 170 (345)
Q Consensus 153 ~GTG~~g~gi~~dG~~~~ 170 (345)
+|.+..-..-+.||.+..
T Consensus 156 iG~~~t~v~pV~dG~~l~ 173 (378)
T PTZ00004 156 SGDGVSHTVPIYEGYSLP 173 (378)
T ss_pred CCCCcEEEEEEECCEEee
Confidence 998764444467888764
No 145
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=67.88 E-value=24 Score=29.61 Aligned_cols=54 Identities=24% Similarity=0.307 Sum_probs=36.7
Q ss_pred ccccccccCCccEEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHH
Q 019144 11 DFETAEESGGREVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEK 79 (345)
Q Consensus 11 ~~~~~~~~~~~~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~ 79 (345)
.|...........++|+|=|.| +-++++|+ +|+++.-...- + .+..++++.|.+
T Consensus 21 ~F~pl~~~~~~~lIVGiDPG~t-tgiAildL---------~G~~l~l~S~R--~---~~~~evi~~I~~ 74 (138)
T PF04312_consen 21 EFVPLSKRSRRYLIVGIDPGTT-TGIAILDL---------DGELLDLKSSR--N---MSRSEVIEWISE 74 (138)
T ss_pred eEccccccCCCCEEEEECCCce-eEEEEEec---------CCcEEEEEeec--C---CCHHHHHHHHHH
Confidence 4665544434569999998865 67888999 89998876532 2 355666665554
No 146
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=67.64 E-value=2.9 Score=39.17 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=29.2
Q ss_pred CccceeeeecCCCCeEEeccCCCCcCCc-CcHHHHHHHHHHH
Q 019144 154 GTGTIAYGFTEDGRDARAAGAGPILGDW-GSGYGIAAQALTA 194 (345)
Q Consensus 154 GTG~~g~gi~~dG~~~~~Gg~G~~~gd~-G~a~~iG~~~~~~ 194 (345)
|.|++--|-+..|.-..+|++||+..++ |..|.||++.|-+
T Consensus 134 G~giv~~G~~~~G~~g~AGEiGh~~v~~~g~~c~CG~~GclE 175 (291)
T PRK05082 134 GGGIVLNGKLLTGPGGLAGHIGHTLADPHGPVCGCGRRGCVE 175 (291)
T ss_pred ceEEEECCEEeeCCCCccccccceEecCCCCCCCCCCcCchh
Confidence 4444444555678888899999997754 5678888886543
No 147
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=65.94 E-value=17 Score=38.85 Aligned_cols=81 Identities=16% Similarity=0.126 Sum_probs=44.0
Q ss_pred HHHHHHcCCHH---HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCc
Q 019144 244 VVSCAEAGDEV---ANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGA 320 (345)
Q Consensus 244 v~~~a~~gD~~---a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~ 320 (345)
+++...+|.+. |..+.+..++.|...+..+....+ ...|+++||++++. + |.+.+.+.+.+. +.
T Consensus 621 ii~~l~~g~~~~~IAa~fh~tla~~L~~~a~~~~~~~g--------~~~VvLSGGVfqN~--~-L~~~L~~~L~~~--g~ 687 (711)
T TIGR00143 621 FLEDLLVGEDRSKIAHIAHKFVASGLVEIATAIAVPFG--------IHKIVISGGVFYNR--L-LLERLAKYLKGL--GF 687 (711)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CCeEEEeccHHHHH--H-HHHHHHHHHHhC--CC
Confidence 34444556522 333333333334444333333334 35799999999874 2 477788877653 23
Q ss_pred eeeC------CCCChHHHHHHHH
Q 019144 321 VPIR------PKVEPAVGAALLA 337 (345)
Q Consensus 321 ~i~~------~~~a~~~GAa~la 337 (345)
++.. .+.+.++|.+++|
T Consensus 688 ~v~~p~~~p~nDgGislGQa~~a 710 (711)
T TIGR00143 688 QFLFHRHLPPGDGGISLGQAVAA 710 (711)
T ss_pred EEEccCCCCCCHHHHHHHHHHHh
Confidence 3332 2344567876654
No 148
>PLN03184 chloroplast Hsp70; Provisional
Probab=62.67 E-value=2.2e+02 Score=30.39 Aligned_cols=89 Identities=15% Similarity=0.047 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHHHHHHH-cCCCccccceeEEeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhcc-c-C-C
Q 019144 69 GEDAARETIEKVMADALLK-SGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASG-T-M-G 144 (345)
Q Consensus 69 ~~~~~~~~l~~~i~~~~~~-~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~-~-~-g 144 (345)
+++++...+.+.+.+..++ .+ ..+..+.|++|-..+...+..+++..+.. ++ ..+.+-|+..+|+++- . . .
T Consensus 148 speei~a~iL~~lk~~ae~~lg---~~v~~~VITVPa~f~~~qR~a~~~Aa~~A-Gl-~v~~li~EPtAAAlayg~~~~~ 222 (673)
T PLN03184 148 AAEEISAQVLRKLVDDASKFLN---DKVTKAVITVPAYFNDSQRTATKDAGRIA-GL-EVLRIINEPTAASLAYGFEKKS 222 (673)
T ss_pred cHHHHHHHHHHHHHHHHHHHhC---CCCCeEEEEECCCCCHHHHHHHHHHHHHC-CC-CeEEEeCcHHHHHHHhhcccCC
Confidence 5666666555555544433 22 34778999999998765555555554433 32 4688999999887742 1 1 1
Q ss_pred CCCeEEEEeCccceeeee
Q 019144 145 KLHGCVLIAGTGTIAYGF 162 (345)
Q Consensus 145 ~~~~v~v~~GTG~~g~gi 162 (345)
.+..+++=+|.|..-..+
T Consensus 223 ~~~vlV~DlGgGT~DvSi 240 (673)
T PLN03184 223 NETILVFDLGGGTFDVSV 240 (673)
T ss_pred CCEEEEEECCCCeEEEEE
Confidence 223445556766543334
No 149
>PRK13410 molecular chaperone DnaK; Provisional
Probab=62.49 E-value=2.2e+02 Score=30.36 Aligned_cols=91 Identities=15% Similarity=0.034 Sum_probs=54.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHcCCCccccceeEEeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhcc-c-CC-
Q 019144 68 VGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASG-T-MG- 144 (345)
Q Consensus 68 ~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~-~-~g- 144 (345)
.+|+++...+.+.+.+..++.- ...|..+.|++|-..+......+++..+. -++ ..+.+-|+..+|+++- . ..
T Consensus 110 ~speel~a~iL~~lk~~ae~~l--g~~v~~~VITVPa~f~~~qR~a~~~Aa~~-AGl-~v~~li~EPtAAAlayg~~~~~ 185 (668)
T PRK13410 110 FAPEELSAMILRKLADDASRYL--GEPVTGAVITVPAYFNDSQRQATRDAGRI-AGL-EVERILNEPTAAALAYGLDRSS 185 (668)
T ss_pred EcHHHHHHHHHHHHHHHHHHHh--CCCcceEEEEECCCCCHHHHHHHHHHHHH-cCC-CeEEEecchHHHHHHhccccCC
Confidence 3577776666665555444321 13577899999999876655556555433 242 4578999999887742 1 11
Q ss_pred CCCeEEEEeCccceeeee
Q 019144 145 KLHGCVLIAGTGTIAYGF 162 (345)
Q Consensus 145 ~~~~v~v~~GTG~~g~gi 162 (345)
.+..+++=+|.|..-..+
T Consensus 186 ~~~vlV~DlGgGT~Dvsv 203 (668)
T PRK13410 186 SQTVLVFDLGGGTFDVSL 203 (668)
T ss_pred CCEEEEEECCCCeEEEEE
Confidence 223455557766533333
No 150
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=62.20 E-value=1.7e+02 Score=29.80 Aligned_cols=97 Identities=15% Similarity=0.277 Sum_probs=58.4
Q ss_pred EEEEEecCccceeeEEEcCc----cCCCCCCC----CCCeeEEEecCCCC---ccccCHHHHHHHHHHHHHHHHHHcCCC
Q 019144 23 VILGLDGGTTSTVCICMPVI----SMSDSLPD----PLPVLARAAAGCSN---HNSVGEDAARETIEKVMADALLKSGSN 91 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~----~~~~~~~~----~g~i~~~~~~~~~~---~~~~~~~~~~~~l~~~i~~~~~~~~~~ 91 (345)
..+|||+|+|.|.+++-.+. .+..+.|+ +-+++.+...-.++ ....+ .+.+.+.|++-.+++|+.
T Consensus 4 ~SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I~dkeViYrS~I~fTPl~~~~~ID----~~al~~iv~~eY~~Agi~ 79 (473)
T PF06277_consen 4 LSVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEIVDKEVIYRSPIYFTPLLSQTEID----AEALKEIVEEEYRKAGIT 79 (473)
T ss_pred EEEEEeecCCceeEEEEEeEEEeccCCCccceEEEeccEEEecCCccccCCCCCCccC----HHHHHHHHHHHHHHcCCC
Confidence 57899999999998887641 11111111 11222222211111 11122 356777888889999999
Q ss_pred ccccceeEEeecCCCChh-HHHHHHHHHHhhCC
Q 019144 92 RSAVRAVCLAVSGVNHPT-DQQRILNWLRDIFP 123 (345)
Q Consensus 92 ~~~i~~Igig~pG~~~~~-~~~~l~~~L~~~~~ 123 (345)
+++|.-=+|=+.|-.-.. .-..+.+.|++..+
T Consensus 80 p~~I~TGAVIITGETArKeNA~~v~~~Ls~~aG 112 (473)
T PF06277_consen 80 PEDIDTGAVIITGETARKENAREVLHALSGFAG 112 (473)
T ss_pred HHHCccccEEEecchhhhhhHHHHHHHHHHhcC
Confidence 999976566677765332 33467788888776
No 151
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=61.32 E-value=17 Score=34.90 Aligned_cols=71 Identities=21% Similarity=0.249 Sum_probs=34.1
Q ss_pred EEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCcc-ccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEeecC
Q 019144 26 GLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHN-SVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (345)
Q Consensus 26 gvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~-~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~pG 104 (345)
|||+|.+++|++.+.-.+. .-.+......+.+... ..+.-.-.+.+.+.+++++++.+... ..+.+++||
T Consensus 1 GiDiG~~siK~v~l~~~~~------~~~l~~~~~~~~p~~~i~~g~i~d~~~l~~~L~~~~~~~~~~~---k~v~~aip~ 71 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSKKGN------RFQLEAFASIPLPPGAISDGEIVDPEALAEALKELLKENKIKG---KKVVLAIPG 71 (340)
T ss_dssp EEEE-SSEEEEEEEETTTT--------EEEEEEEEE--TTSEETTEES-HHHHHHHHHHHHHHHT-------EEEEEE-G
T ss_pred CeecCCCeEEEEEEEEcCC------ccEEEEEEEEECCCCCccCCCcCCHHHHHHHHHHHHHHcCCCC---CeEEEEeCC
Confidence 8999999999998886210 1123333333332211 01111123456666777777776543 345567777
Q ss_pred C
Q 019144 105 V 105 (345)
Q Consensus 105 ~ 105 (345)
.
T Consensus 72 ~ 72 (340)
T PF11104_consen 72 S 72 (340)
T ss_dssp G
T ss_pred C
Confidence 4
No 152
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=60.93 E-value=2.1e+02 Score=29.56 Aligned_cols=90 Identities=18% Similarity=0.072 Sum_probs=52.8
Q ss_pred cCHHHHHHHHHHHHHHHHHHc-CCCccccceeEEeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhcc-c-CC
Q 019144 68 VGEDAARETIEKVMADALLKS-GSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASG-T-MG 144 (345)
Q Consensus 68 ~~~~~~~~~l~~~i~~~~~~~-~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~-~-~g 144 (345)
.+|+++...+.+.+.+..++. + ..+..+.|++|...+......+++..+.. ++ .++.+-|+..+|+++- . ..
T Consensus 110 ~~~~~~~~~~l~~l~~~a~~~~~---~~~~~~vitVPa~~~~~qr~~~~~Aa~~a-gl-~~~~li~Ep~Aaa~~y~~~~~ 184 (602)
T PF00012_consen 110 YSPEELSAMILKYLKEMAEKYLG---EKVTDVVITVPAYFTDEQRQALRDAAELA-GL-NVLRLINEPTAAALAYGLERS 184 (602)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHT---SBEEEEEEEE-TT--HHHHHHHHHHHHHT-T--EEEEEEEHHHHHHHHTTTTSS
T ss_pred eeeecccccchhhhcccchhhcc---cccccceeeechhhhhhhhhccccccccc-cc-ccceeeccccccccccccccc
Confidence 467777777666666655543 3 23678899999998776666677666543 32 4567899999887641 1 11
Q ss_pred C--CCeEEEEeCccceeeee
Q 019144 145 K--LHGCVLIAGTGTIAYGF 162 (345)
Q Consensus 145 ~--~~~v~v~~GTG~~g~gi 162 (345)
. +..+++=+|.|..-..+
T Consensus 185 ~~~~~vlv~D~Gggt~dvs~ 204 (602)
T PF00012_consen 185 DKGKTVLVVDFGGGTFDVSV 204 (602)
T ss_dssp SSEEEEEEEEEESSEEEEEE
T ss_pred ccccceeccccccceEeeee
Confidence 1 23445556766443334
No 153
>PRK11678 putative chaperone; Provisional
Probab=59.56 E-value=59 Score=32.80 Aligned_cols=48 Identities=17% Similarity=0.163 Sum_probs=35.5
Q ss_pred CccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeC--CCCChHHHHHHHHHHhh
Q 019144 287 SFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIR--PKVEPAVGAALLAWNSF 341 (345)
Q Consensus 287 p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~i~~--~~~a~~~GAa~la~~~~ 341 (345)
|+.|++.||... ++.+++.+.+.+|...+.. +..+.+.|++..|.+.|
T Consensus 400 ~d~VvLvGGsSr-------iP~V~~~l~~~fg~~~v~~g~~~~sVa~Gla~~a~~~~ 449 (450)
T PRK11678 400 PDVIYLTGGSAR-------SPLIRAALAQQLPGIPIVGGDDFGSVTAGLARWAQVVF 449 (450)
T ss_pred CCEEEEcCcccc-------hHHHHHHHHHHCCCCcEEeCCCcchHHHHHHHHHHhhc
Confidence 578999999773 5567777888777655554 35677889999987765
No 154
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=59.06 E-value=40 Score=34.28 Aligned_cols=77 Identities=16% Similarity=0.233 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCChHHH
Q 019144 253 EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVG 332 (345)
Q Consensus 253 ~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~i~~~~~a~~~G 332 (345)
..++.+++-.+..+...+-.+...... ..+.|+++||...+ +.| .+ ++.-+... ++++.....++++|
T Consensus 374 ~l~rAvlEgia~~~~~~~~~~~~~~g~------~~~~i~~~GGga~s-~~w--~Q-i~Adv~g~--pv~~~~~~e~~a~G 441 (505)
T TIGR01314 374 HMIRAALEGVIYNLYTVALALVEVMGD------PLNMIQATGGFASS-EVW--RQ-MMSDIFEQ--EIVVPESYESSCLG 441 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC------CCcEEEEecCcccC-HHH--HH-HHHHHcCC--eeEecCCCCcchHH
Confidence 456677777777766666555443331 24678888886643 433 33 33333221 23444455688999
Q ss_pred HHHHHHHhh
Q 019144 333 AALLAWNSF 341 (345)
Q Consensus 333 Aa~la~~~~ 341 (345)
||+++...+
T Consensus 442 aA~la~~~~ 450 (505)
T TIGR01314 442 ACILGLKAL 450 (505)
T ss_pred HHHHHHHhc
Confidence 999987543
No 155
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=58.52 E-value=2.3e+02 Score=29.32 Aligned_cols=74 Identities=18% Similarity=0.158 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCChHHHHHH
Q 019144 256 NKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGAAL 335 (345)
Q Consensus 256 ~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~i~~~~~a~~~GAa~ 335 (345)
..+.......++-+..+++..|.- ++=.-+.|.++||+ ..++.+ ++.+-.... ..+++..+++++++|+|.
T Consensus 404 ~~lY~a~l~a~A~GtR~Iie~~~~---~g~~Id~l~~sGG~-~KN~ll--mql~aDvtg---~~v~i~~s~~a~llGsAm 474 (544)
T COG1069 404 ALLYRALLEATAFGTRAIIETFED---QGIAIDTLFASGGI-RKNPLL--MQLYADVTG---RPVVIPASDQAVLLGAAM 474 (544)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH---cCCeeeEEEecCCc-ccCHHH--HHHHHHhcC---CeEEeecccchhhhHHHH
Confidence 367788889999999999988872 22223579999999 444432 333322221 235555678899999998
Q ss_pred HHH
Q 019144 336 LAW 338 (345)
Q Consensus 336 la~ 338 (345)
++.
T Consensus 475 ~~a 477 (544)
T COG1069 475 FAA 477 (544)
T ss_pred HHH
Confidence 865
No 156
>PRK04123 ribulokinase; Provisional
Probab=58.35 E-value=35 Score=35.13 Aligned_cols=74 Identities=15% Similarity=0.170 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCChHHHH
Q 019144 254 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGA 333 (345)
Q Consensus 254 ~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~i~~~~~a~~~GA 333 (345)
.++.+++-.+-.+...+-.+-.. +..+..|++.||....++.| .+.+ .-+... ++.+.....++++||
T Consensus 413 l~RAvlEgia~~~~~~~e~l~~~-------g~~~~~i~~~GGg~s~s~~w--~Qi~-ADv~g~--pV~~~~~~e~~alGa 480 (548)
T PRK04123 413 IYRALIEATAFGTRAIMECFEDQ-------GVPVEEVIAAGGIARKNPVL--MQIY-ADVLNR--PIQVVASDQCPALGA 480 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc-------CCCcceEEEeCCCcccCHHH--HHHH-HHhcCC--ceEecCccccchHHH
Confidence 44555555554444444433221 12256788889873344444 3333 222221 233334566789999
Q ss_pred HHHHHH
Q 019144 334 ALLAWN 339 (345)
Q Consensus 334 a~la~~ 339 (345)
|++|..
T Consensus 481 A~lA~~ 486 (548)
T PRK04123 481 AIFAAV 486 (548)
T ss_pred HHHHHH
Confidence 999864
No 157
>PTZ00281 actin; Provisional
Probab=57.91 E-value=1.9e+02 Score=28.20 Aligned_cols=93 Identities=17% Similarity=0.252 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHH-HcCCCccccceeEEeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhcccCCCCCeEEEE
Q 019144 74 RETIEKVMADALL-KSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTMGKLHGCVLI 152 (345)
Q Consensus 74 ~~~l~~~i~~~~~-~~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~~~g~~~~v~v~ 152 (345)
|+.+.++++..+. ...+++.. ..+-+.-|-...+..+..+.+.|=|.|+. ..+++.+++.+++++ .|..++++|=
T Consensus 80 wd~~e~l~~~~f~~~l~v~p~~-~pvllte~~~~~~~~re~l~e~lFE~~~v-p~~~~~~~~~ls~ya--~g~~tglVVD 155 (376)
T PTZ00281 80 WDDMEKIWHHTFYNELRVAPEE-HPVLLTEAPLNPKANREKMTQIMFETFNT-PAMYVAIQAVLSLYA--SGRTTGIVMD 155 (376)
T ss_pred HHHHHHHHHHHHHhhccCCCcc-CeEEEecCCCCcHHHHHHHHHHHhcccCC-ceeEeeccHHHHHHh--cCCceEEEEE
Confidence 5555555555543 33444432 34555555555555667788888888873 348999999999885 3556889999
Q ss_pred eCccceeeeecCCCCeEE
Q 019144 153 AGTGTIAYGFTEDGRDAR 170 (345)
Q Consensus 153 ~GTG~~g~gi~~dG~~~~ 170 (345)
+|.+..-.-=+.||.+..
T Consensus 156 iG~~~t~v~PV~dG~~~~ 173 (376)
T PTZ00281 156 SGDGVSHTVPIYEGYALP 173 (376)
T ss_pred CCCceEEEEEEEecccch
Confidence 998864333367887753
No 158
>PHA03033 hypothetical protein; Provisional
Probab=57.90 E-value=3.8 Score=33.62 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=20.9
Q ss_pred ccccccccccccccccCCccEEEEEecC
Q 019144 3 RYRNGEIWDFETAEESGGREVILGLDGG 30 (345)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~lgvDiG 30 (345)
+|-||.||||-|+..+---...++.|..
T Consensus 4 ~eIng~~~DLFS~p~~~sLaHCIsAD~~ 31 (142)
T PHA03033 4 EYINENIWDFLSDDDNINIISFISADFI 31 (142)
T ss_pred EEecCcchhhhcCCCcceEeeeehhhhh
Confidence 6889999999998776643466777743
No 159
>PLN02669 xylulokinase
Probab=57.46 E-value=33 Score=35.62 Aligned_cols=75 Identities=13% Similarity=0.166 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCChHHHH
Q 019144 254 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGA 333 (345)
Q Consensus 254 ~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~i~~~~~a~~~GA 333 (345)
.++.+++-.+-.+-..+..+ .. ...|.+|++.||-. .++.| .+.+-..+. . ++.......++++||
T Consensus 421 ~~RAvlEg~a~~~r~~~~~l----~~----~~~~~~i~~~GGgs-~s~~w--~Qi~ADVlg-~--pV~~~~~~ea~alGA 486 (556)
T PLN02669 421 EVRAIIEGQFLSMRAHAERF----GM----PVPPKRIIATGGAS-ANQSI--LKLIASIFG-C--DVYTVQRPDSASLGA 486 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHH----hC----CCCCcEEEEEcChh-cCHHH--HHHHHHHcC-C--CeEecCCCCchHHHH
Confidence 45566665555554444333 21 12257899999965 44443 333333332 2 344444456789999
Q ss_pred HHHHHHhhh
Q 019144 334 ALLAWNSFM 342 (345)
Q Consensus 334 a~la~~~~~ 342 (345)
|++|.-.+.
T Consensus 487 A~~A~~~~~ 495 (556)
T PLN02669 487 ALRAAHGWL 495 (556)
T ss_pred HHHHHHHHh
Confidence 999976554
No 160
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=57.22 E-value=2e+02 Score=28.26 Aligned_cols=57 Identities=11% Similarity=0.186 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHcCCCccccceeEEeecCCC---ChhHHHH--H--HHHHHhhCCCCceEEEeCcH
Q 019144 74 RETIEKVMADALLKSGSNRSAVRAVCLAVSGVN---HPTDQQR--I--LNWLRDIFPGNVRLYVHNDA 134 (345)
Q Consensus 74 ~~~l~~~i~~~~~~~~~~~~~i~~Igig~pG~~---~~~~~~~--l--~~~L~~~~~~~~pV~v~NDa 134 (345)
=+...++++++++++++++++|..| |.+|.. .|..... | ...|.+.++ .||.-+--+
T Consensus 70 g~~~a~av~~~~~~~~l~~~~id~I--gsHGQTv~H~P~~~~TlQiG~~~~iA~~tg--i~VV~DFR~ 133 (365)
T PRK09585 70 GRLFAEAVNALLAEAGLSPEDIDAI--GSHGQTVRHRPGEGFTLQIGDGALIAELTG--ITVVADFRR 133 (365)
T ss_pred HHHHHHHHHHHHHHcCCCccCccEE--EeCCcccccCCCCCCeEEcCCHHHHHHHHC--cCEEecChH
Confidence 3455667888899999988888765 558862 2221111 1 356667776 665544433
No 161
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=56.70 E-value=63 Score=32.22 Aligned_cols=85 Identities=14% Similarity=0.119 Sum_probs=44.9
Q ss_pred ccEEEEEecCccceeeEEEcCc-cCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeE
Q 019144 21 REVILGLDGGTTSTVCICMPVI-SMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVC 99 (345)
Q Consensus 21 ~~~~lgvDiG~t~~~~~l~d~~-~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Ig 99 (345)
+.|.+-+|.|.|-+|+-++-++ .+....+.-..-+.....|-......+|++..+.|..+++.+.+.....--+..-|+
T Consensus 66 ~~Y~iiiDAGSTGsRvHvY~F~~~~~~~~p~le~E~F~~~kPGLSsfaddp~~aA~Sl~~LLd~A~~~vP~~~~~kTPi~ 145 (453)
T KOG1385|consen 66 RQYAIIIDAGSTGTRVHVYKFDQCLPGMPPELEHELFKEVKPGLSSFADDPEEAANSLRPLLDVAEAFVPREHWKKTPIV 145 (453)
T ss_pred eEEEEEEecCCCcceEEEEEeccCCCCCCchhHHHHHhhcCCcccccCCChHHHHHhHHHHHHHHHhhCCHhHhccCceE
Confidence 4699999999999999998773 111011110001111111211122357788888888777777665432211222333
Q ss_pred E-eecCC
Q 019144 100 L-AVSGV 105 (345)
Q Consensus 100 i-g~pG~ 105 (345)
+ +++|.
T Consensus 146 lkATAGL 152 (453)
T KOG1385|consen 146 LKATAGL 152 (453)
T ss_pred EEeeccc
Confidence 3 56776
No 162
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=54.44 E-value=25 Score=35.57 Aligned_cols=51 Identities=20% Similarity=0.042 Sum_probs=33.5
Q ss_pred EecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHH-HHHHHHHHHHHcC
Q 019144 27 LDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARET-IEKVMADALLKSG 89 (345)
Q Consensus 27 vDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~-l~~~i~~~~~~~~ 89 (345)
+|+|+|.||+.++|++ +.++....+..++. ..+.+..- +.++++++.++.+
T Consensus 1 ~DiGST~Tk~~a~~~~--------~~~~~~~~~~~tpT----t~~dv~~G~~~~a~~~l~~~~~ 52 (463)
T TIGR01319 1 LDFGSTWTKAAAFDIE--------GDAILATAHDITPI----ESDHLAGGFFNKANEKLNEDLA 52 (463)
T ss_pred CCccccceEEEEEecC--------CCcEEEEEeccCcc----chhhhhcchHHHHHHHHHHhcC
Confidence 5999999999999983 46666666554421 12344444 6667777666644
No 163
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=54.40 E-value=2.1 Score=40.55 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=29.6
Q ss_pred eCccceeeeecCCCCeEEeccCCCCcCCcCcHHHHHHHHHHH
Q 019144 153 AGTGTIAYGFTEDGRDARAAGAGPILGDWGSGYGIAAQALTA 194 (345)
Q Consensus 153 ~GTG~~g~gi~~dG~~~~~Gg~G~~~gd~G~a~~iG~~~~~~ 194 (345)
+|.|++--|-+..|.-..+|++|||..+..+.|.||+..|.+
T Consensus 144 IG~giv~~g~l~~G~~g~age~Gh~~v~~~g~c~cG~~GclE 185 (314)
T COG1940 144 IGGGIIVNGKLLRGANGNAGEIGHMVVDPDGECGCGRRGCLE 185 (314)
T ss_pred eeEEEEECCEEeecCCCccccccceEECCCCccCCCCCCchH
Confidence 344444445556788888999999987664448888887654
No 164
>PRK15027 xylulokinase; Provisional
Probab=54.20 E-value=47 Score=33.57 Aligned_cols=75 Identities=23% Similarity=0.220 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeC-CCCChHH
Q 019144 253 EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIR-PKVEPAV 331 (345)
Q Consensus 253 ~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~i~~-~~~a~~~ 331 (345)
..++.+++-.+..+...+-.+-.. . ..+..|++.||.. .++.| .+.+-..+.. ++.+.. .+.++++
T Consensus 360 ~l~rAvlEgia~~~~~~~~~l~~~-g------~~~~~i~~~GGga-~s~~w--~Qi~Adv~g~---pv~~~~~~~~~~a~ 426 (484)
T PRK15027 360 ELARAVLEGVGYALADGMDVVHAC-G------IKPQSVTLIGGGA-RSEYW--RQMLADISGQ---QLDYRTGGDVGPAL 426 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc-C------CCccEEEEeCccc-CCHHH--HHHHHHHhCC---eEEeecCCCcchHH
Confidence 445566666666655555444321 1 1246788888854 33433 3333222221 132222 3447899
Q ss_pred HHHHHHHHh
Q 019144 332 GAALLAWNS 340 (345)
Q Consensus 332 GAa~la~~~ 340 (345)
|||++|...
T Consensus 427 GaA~lA~~~ 435 (484)
T PRK15027 427 GAARLAQIA 435 (484)
T ss_pred HHHHHHHHh
Confidence 999998754
No 165
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=53.76 E-value=64 Score=27.83 Aligned_cols=57 Identities=16% Similarity=0.109 Sum_probs=37.4
Q ss_pred EEEEEecCccceeeEEEcCccCCCCCCCCCC---eeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCC
Q 019144 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLP---VLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGS 90 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~---i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 90 (345)
.+||||-|.+++=+++++. +++ ++......++.. .+..+-+..|.+-+.+++++..+
T Consensus 3 ~iLGIDPgl~~tG~avi~~---------~~~~~~~~~~G~i~t~~~--~~~~~Rl~~I~~~l~~~i~~~~P 62 (164)
T PRK00039 3 RILGIDPGLRRTGYGVIEV---------EGRRLSYVASGVIRTPSD--LDLPERLKQIYDGLSELIDEYQP 62 (164)
T ss_pred EEEEEccccCceeEEEEEe---------cCCeEEEEEeeEEECCCC--CCHHHHHHHHHHHHHHHHHHhCC
Confidence 7999999999999999998 444 233333222211 23345567777777777777643
No 166
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=53.41 E-value=60 Score=32.57 Aligned_cols=77 Identities=17% Similarity=0.198 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCChHHH
Q 019144 253 EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVG 332 (345)
Q Consensus 253 ~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~i~~~~~a~~~G 332 (345)
..++.+++-.+..+...+..+-..-. ..+..|++.||..+. +.| .+.+...+.. ++.......++++|
T Consensus 363 ~l~railEgia~~~~~~~~~l~~~~~------~~~~~i~~~GG~s~s-~~~--~Q~~Adv~g~---pv~~~~~~e~~a~G 430 (481)
T TIGR01312 363 DLTRAVLEGVTFALRDSLDILREAGG------IPIQSIRLIGGGAKS-PAW--RQMLADIFGT---PVDVPEGEEGPALG 430 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC------CCcceEEEeccccCC-HHH--HHHHHHHhCC---ceeecCCCcchHHH
Confidence 35566666666666666554433211 124678888887643 433 4333333321 23333455788999
Q ss_pred HHHHHHHhh
Q 019144 333 AALLAWNSF 341 (345)
Q Consensus 333 Aa~la~~~~ 341 (345)
||+++...+
T Consensus 431 aA~~a~~~~ 439 (481)
T TIGR01312 431 AAILAAWAL 439 (481)
T ss_pred HHHHHHHhc
Confidence 999987543
No 167
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=53.29 E-value=28 Score=28.60 Aligned_cols=29 Identities=14% Similarity=0.072 Sum_probs=24.2
Q ss_pred EEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecC
Q 019144 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG 61 (345)
Q Consensus 24 ~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~ 61 (345)
++|||++-.+..++++|. .+.+.......
T Consensus 1 ~vGiDv~k~~~~v~v~~~---------~~~~~~~~~~~ 29 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDP---------NGEKLRRFKFE 29 (144)
T ss_pred eEEEEcccCeEEEEEEcC---------CCcEEEEEEEe
Confidence 689999999999999998 77666666653
No 168
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=53.06 E-value=33 Score=29.05 Aligned_cols=60 Identities=15% Similarity=0.148 Sum_probs=35.0
Q ss_pred EEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCC
Q 019144 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSN 91 (345)
Q Consensus 24 ~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~ 91 (345)
+||||-|.+++-+++++..+. .-+.+......+... .+..+-+..|.+.+.+++++..++
T Consensus 1 ILGIDPgl~~tG~avi~~~~~------~~~~i~~G~I~t~~~--~~~~~Rl~~I~~~l~~li~~~~P~ 60 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGG------KLRLIDYGTIKTSSK--DSLPERLKEIYEELEELIEEYNPD 60 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETT------EEEEEEEEEEE---S----HHHHHHHHHHHHHHHHHHH--S
T ss_pred CEEECCCCCCeeEEEEEeeCC------EEEEEEeCeEECCCC--CCHHHHHHHHHHHHHHHHHhhCCC
Confidence 699999999999999998311 123344433333221 345667777888888888877543
No 169
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=52.72 E-value=51 Score=33.88 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCChHHHH
Q 019144 254 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGA 333 (345)
Q Consensus 254 ~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~i~~~~~a~~~GA 333 (345)
.++.+++-.+..+... +..+.- .+..++.|++.||.+..++.| .+ +..-+... ++++.....++++||
T Consensus 410 ~~RAvlEgia~~~~~~----l~~l~~---~g~~~~~i~~~GGg~a~s~~w--~Q-i~Adv~g~--pV~~~~~~e~~a~Ga 477 (536)
T TIGR01234 410 LYRALIEATAFGTRMI----METFTD---SGVPVEELMAAGGIARKNPVI--MQ-IYADVTNR--PLQIVASDQAPALGA 477 (536)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHh---cCCCcceEEEeCCccccCHHH--HH-HHHHhhCC--eeEeccCCcchhHHH
Confidence 4455555544444444 333321 122357798999984344544 43 33333221 233334456789999
Q ss_pred HHHHHHh
Q 019144 334 ALLAWNS 340 (345)
Q Consensus 334 a~la~~~ 340 (345)
|++|...
T Consensus 478 A~lA~~~ 484 (536)
T TIGR01234 478 AIFAAVA 484 (536)
T ss_pred HHHHHHH
Confidence 9998744
No 170
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=52.58 E-value=58 Score=33.18 Aligned_cols=75 Identities=16% Similarity=0.090 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCChHHHH
Q 019144 254 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGA 333 (345)
Q Consensus 254 ~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~i~~~~~a~~~GA 333 (345)
.++.+++-.+..+...+..+-.... ..++.|++.||..++ +.| .+.+...+.. ++.+.....++++||
T Consensus 380 i~rAvlEgia~~~r~~~~~l~~~~g------~~~~~i~~~GG~a~s-~~w--~Qi~Adv~g~---pV~~~~~~e~~alGa 447 (504)
T PTZ00294 380 IVRAALEAIALQTNDVIESMEKDAG------IELNSLRVDGGLTKN-KLL--MQFQADILGK---DIVVPEMAETTALGA 447 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC------CCcceEEEecccccC-HHH--HHHHHHHhCC---ceEecCcccchHHHH
Confidence 4556666666655555544432212 124678888887754 333 3333332221 234344556789999
Q ss_pred HHHHHHh
Q 019144 334 ALLAWNS 340 (345)
Q Consensus 334 a~la~~~ 340 (345)
|+++...
T Consensus 448 Al~aa~a 454 (504)
T PTZ00294 448 ALLAGLA 454 (504)
T ss_pred HHHHHhh
Confidence 9998643
No 171
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=52.30 E-value=33 Score=34.97 Aligned_cols=31 Identities=16% Similarity=0.085 Sum_probs=26.9
Q ss_pred cEEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEec
Q 019144 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAA 60 (345)
Q Consensus 22 ~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~ 60 (345)
.|-+++|+|+|.+++.++|+. +|+++.....
T Consensus 164 ~YGvAvDlGTS~i~aqlVDL~--------sgevv~t~~T 194 (614)
T COG3894 164 AYGVAVDLGTSGIRAQLVDLK--------SGEVVATVIT 194 (614)
T ss_pred eeeeEEecccceeeeEEEecc--------CCcEEEeeec
Confidence 399999999999999999994 7998887653
No 172
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=51.26 E-value=68 Score=27.16 Aligned_cols=59 Identities=20% Similarity=0.146 Sum_probs=36.8
Q ss_pred EEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCC
Q 019144 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGS 90 (345)
Q Consensus 24 ~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 90 (345)
+||||-|.+++-+++++..+. .-+++......+... .+..+-+..+.+.+.+++.+..+
T Consensus 2 ILGIDPGl~~~G~av~~~~~~------~~~~~~~g~i~t~~~--~~~~~rl~~I~~~l~~~i~~~~P 60 (154)
T cd00529 2 ILGIDPGSRNTGYGVIEQEGR------KLIYLASGVIRTSSD--APLPSRLKTIYDGLNEVIDQFQP 60 (154)
T ss_pred EEEEccCcCceEEEEEEeeCC------eEEEEEeeEEECCCC--CCHHHHHHHHHHHHHHHHHHhCC
Confidence 799999999999999987210 122233333322211 24455567777788888876643
No 173
>PRK10331 L-fuculokinase; Provisional
Probab=51.16 E-value=57 Score=32.86 Aligned_cols=75 Identities=16% Similarity=0.220 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCChHHH
Q 019144 253 EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVG 332 (345)
Q Consensus 253 ~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~i~~~~~a~~~G 332 (345)
..++.+++-.+..+...+-.+-..-. ..+..|++.||..+ ++.| .+.+...+. . ++++.....++++|
T Consensus 362 ~l~rAvlEgia~~~~~~~~~l~~~~~------~~~~~i~~~GGga~-s~~w--~Qi~Advlg-~--pV~~~~~~e~~a~G 429 (470)
T PRK10331 362 HFYRAALEGLTAQLKRNLQVLEKIGH------FKASELLLVGGGSR-NALW--NQIKANMLD-I--PIKVLDDAETTVAG 429 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC------CCCceEEEEccccc-CHHH--HHHHHHhcC-C--eeEecCcccchHHH
Confidence 35566666666666666555443211 11467888888653 3433 333322222 1 23333445678999
Q ss_pred HHHHHHH
Q 019144 333 AALLAWN 339 (345)
Q Consensus 333 Aa~la~~ 339 (345)
||+++..
T Consensus 430 aA~la~~ 436 (470)
T PRK10331 430 AAMFGWY 436 (470)
T ss_pred HHHHHHH
Confidence 9999864
No 174
>PRK00047 glpK glycerol kinase; Provisional
Probab=50.64 E-value=66 Score=32.66 Aligned_cols=75 Identities=17% Similarity=0.018 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCChHHHH
Q 019144 254 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGA 333 (345)
Q Consensus 254 ~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~i~~~~~a~~~GA 333 (345)
.++.+++-.+..+...+-.+-.... ..+..|+++||.. .++.| .+.+...+.. +++......++++||
T Consensus 377 l~rAvlEgia~~~r~~~e~l~~~~g------~~~~~i~~~GGga-~s~~w--~Qi~ADvlg~---pV~~~~~~e~~a~Ga 444 (498)
T PRK00047 377 IIRATLESIAYQTRDVLDAMQADSG------IRLKELRVDGGAV-ANNFL--MQFQADILGV---PVERPVVAETTALGA 444 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC------CCCceEEEecCcc-cCHHH--HHHHHHhhCC---eeEecCcccchHHHH
Confidence 4556666666666665544432211 1246788888855 33443 3333333221 233334456789999
Q ss_pred HHHHHHh
Q 019144 334 ALLAWNS 340 (345)
Q Consensus 334 a~la~~~ 340 (345)
|++|...
T Consensus 445 A~~A~~~ 451 (498)
T PRK00047 445 AYLAGLA 451 (498)
T ss_pred HHHHhhh
Confidence 9998644
No 175
>PTZ00280 Actin-related protein 3; Provisional
Probab=50.62 E-value=1.4e+02 Score=29.44 Aligned_cols=95 Identities=20% Similarity=0.223 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHH-HHcCCCccccceeEEeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhcccC--------C
Q 019144 74 RETIEKVMADAL-LKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGTM--------G 144 (345)
Q Consensus 74 ~~~l~~~i~~~~-~~~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~~~--------g 144 (345)
|+.+..+++.++ ++...++.. ..+-+.-|-...+..+..+.+.|-|.|+. ..+++.+++.+++++.+. +
T Consensus 81 wd~~e~l~~~~~~~~L~~~p~~-~~vllte~~~~~~~~Re~l~e~lFE~~~~-p~i~~~~~~~lslya~~~~~~~~~~~g 158 (414)
T PTZ00280 81 WDLMEKFWEQCIFKYLRCEPEE-HYFILTEPPMNPPENREYTAEIMFETFNV-KGLYIAVQAVLALRASWTSKKAKELGG 158 (414)
T ss_pred HHHHHHHHHHHHHHhhccCCCC-CceEEeeCCCCcHHHHHHHHHHHhhccCC-CeEEEecCHHHhHhhhcccccccccCC
Confidence 344444444433 222333322 24556666666555667788889898873 348999999999886421 5
Q ss_pred CCCeEEEEeCccceeeeecCCCCeEE
Q 019144 145 KLHGCVLIAGTGTIAYGFTEDGRDAR 170 (345)
Q Consensus 145 ~~~~v~v~~GTG~~g~gi~~dG~~~~ 170 (345)
..++++|-+|.+..-..-+.+|.+..
T Consensus 159 ~~tglVVDiG~~~T~i~PV~~G~~l~ 184 (414)
T PTZ00280 159 TLTGTVIDSGDGVTHVIPVVDGYVIG 184 (414)
T ss_pred ceeEEEEECCCCceEEEEEECCEEcc
Confidence 56789999998864444467787753
No 176
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=49.17 E-value=36 Score=27.78 Aligned_cols=39 Identities=8% Similarity=0.118 Sum_probs=32.1
Q ss_pred cCHHHHHHHHHHHHHHHHHHcCCCccccceeEEeecCCC
Q 019144 68 VGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVN 106 (345)
Q Consensus 68 ~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~pG~~ 106 (345)
-+++++++...+++.+++++.++.+++|..|-+.+.-=.
T Consensus 13 n~~e~I~~at~eLl~~i~~~N~l~~~dIvSi~FT~T~DL 51 (118)
T PF07736_consen 13 NTPEEILEATRELLEEILERNELSPEDIVSIIFTVTPDL 51 (118)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTT--GGGEEEEEEEE-TT-
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeCCCc
Confidence 368999999999999999999999999999999887654
No 177
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=48.56 E-value=49 Score=31.33 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=32.2
Q ss_pred EEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcC
Q 019144 25 LGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSG 89 (345)
Q Consensus 25 lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~ 89 (345)
+|||-|+.++.+.-+|. +.|+++.+...++... ..+|.-+ .+++++.-.+++
T Consensus 1 ~GIDpGT~smdvfgfdD--------Esg~vi~~~~I~rdeV-tk~p~ii----v~ii~e~~~e~g 52 (374)
T COG2441 1 IGIDPGTGSMDVFGFDD--------ESGNVIVDVAIPRDEV-TKSPRII----VDIIEEVQAEVG 52 (374)
T ss_pred CCcCCCCCceeEEEEec--------CCCCEEEEEecCHHHh-ccCchHH----HHHHHHHhhhhc
Confidence 47899997777655553 2799999988765433 3455533 444455544443
No 178
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=48.46 E-value=66 Score=32.39 Aligned_cols=75 Identities=17% Similarity=0.223 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCChHHHH
Q 019144 254 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGA 333 (345)
Q Consensus 254 ~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~i~~~~~a~~~GA 333 (345)
..+.+++-.+..+...+..+-..-. ..+..|++.||-.+ ++.| .+.+ .-+... ++++.....++++||
T Consensus 367 l~rAvlEgia~~~r~~~e~l~~~~~------~~~~~i~~~GGga~-s~~w--~Qi~-Adv~g~--pV~~~~~~e~~~lGa 434 (465)
T TIGR02628 367 IYRAALEGLTAQLKRNLQMLEQIGQ------FKASELLLVGGGSK-NTLW--NQIR-ANMLDI--PVKVVDDAETTVAGA 434 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC------CCcceEEEecCccC-CHHH--HHHh-hhhcCC--eeEeccCCcchHHHH
Confidence 4555666555555555544432201 12467888888653 3433 3322 222221 233334456789999
Q ss_pred HHHHHHh
Q 019144 334 ALLAWNS 340 (345)
Q Consensus 334 a~la~~~ 340 (345)
|+++...
T Consensus 435 A~~a~~a 441 (465)
T TIGR02628 435 AMFGFYG 441 (465)
T ss_pred HHHHHHh
Confidence 9998754
No 179
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=48.15 E-value=2.3e+02 Score=26.29 Aligned_cols=209 Identities=15% Similarity=0.122 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHHHcCCCccccceeEEeecCCCChhH---HHHHHHHHHhhCCCCceEEEeCcHHHHHhcccCCC----
Q 019144 73 ARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTD---QQRILNWLRDIFPGNVRLYVHNDALAALASGTMGK---- 145 (345)
Q Consensus 73 ~~~~l~~~i~~~~~~~~~~~~~i~~Igig~pG~~~~~~---~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~~~g~---- 145 (345)
=.+.|..++++++++++++..+|.+|+++. ||.+... +..+.+.|.-.++ .|++=.|--.+-++......
T Consensus 29 H~~~L~~~i~~~l~~~~~~~~did~iavt~-GPGsftgLrvG~~~Ak~La~~~~--~Pli~v~~l~a~a~~~~~~~~~~~ 105 (268)
T PF00814_consen 29 HSENLPPLIEELLKEAGISLSDIDAIAVTR-GPGSFTGLRVGLSFAKGLALALN--IPLIGVSHLEAHALSARLSEGLKF 105 (268)
T ss_dssp HHHHHHHHHHHHHHHHTS-GGGESEEEEEE-ESS-HHHHHHHHHHHHHHHHHTT----EEEEEHHHHHHHHHHHHHTEES
T ss_pred HHHHHHHHHHHHHHHcCCCHHHCCEEEEec-CCCcccccHHHHHHHHHHHHHhC--CCeEeeccHHHHHHhHhhhccccC
Confidence 367788889999999999999999888764 5544332 3567888888887 89888887776544332111
Q ss_pred CCeEEEEeCccceeeeecCCCCeEE-eccCCCCcCCcCcHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHHcCCCChhhH
Q 019144 146 LHGCVLIAGTGTIAYGFTEDGRDAR-AAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLTSNILSTLELSSPDEL 224 (345)
Q Consensus 146 ~~~v~v~~GTG~~g~gi~~dG~~~~-~Gg~G~~~gd~G~a~~iG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l 224 (345)
.-.+++..|++-+- ...+ ..+. .|+- .|. ..++. ++...+. -+.. .+-...+++.... . +.
T Consensus 106 P~~~~isa~~~~vy--~~~~-~~~~~~~~t----~d~-~~ge~----~dk~~~~-l~l~--~~~g~~le~la~~-~-~~- 167 (268)
T PF00814_consen 106 PLVLLISAGHTEVY--LAEG-GDYEILGET----LDD-AIGEA----FDKVARL-LGLP--YPGGPALEKLASE-G-EA- 167 (268)
T ss_dssp EEEEEEECSTCEEE--EEET-TEEEEECCB----SSS-CHHHH----HHHHHHH-TT----SSHHHHHHHHHCT---S--
T ss_pred ceEEEEECCCccEE--EEEe-eEEEeeccc----ccc-ccHHH----HhhHHHH-hccc--cccCcHHHHHHHh-C-Cc-
Confidence 11233444555422 2222 3333 1111 121 12221 1111111 1110 0001122222210 1 10
Q ss_pred HHHhhc--CCChHHHhcchHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCccc
Q 019144 225 IGWTYV--DPSWARIAALVPVVVSCAEAGDEVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRR 302 (345)
Q Consensus 225 ~~~~~~--~~~~~~~~~~~~~v~~~a~~gD~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~ 302 (345)
.+.... +.+. .+......+....++ ...|..+-+...+.|...+...++... ...++++||++.+.
T Consensus 168 ~~~p~~~~~~~~-sFsG~~t~~~~~i~~-~~iA~s~q~~~~~~l~~~~~~a~~~~~--------~~~lv~~GGVaaN~-- 235 (268)
T PF00814_consen 168 FKFPRPLKNCDF-SFSGLKTAVYRLIEK-ADIAASFQEAIADHLAKKAPRALEKPR--------AKSLVVSGGVAANK-- 235 (268)
T ss_dssp -----SEETTEE-EEHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHT--------CSEEEEESGGGGHH--
T ss_pred ceeccceeeeeE-EEEcccHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHhhc--------ccccchHHHHHHHH--
Confidence 000000 0000 000011122333222 667777777778888888888888877 48999999999753
Q ss_pred ccchHHHHHHHHh
Q 019144 303 WDIGREVVKCILR 315 (345)
Q Consensus 303 ~~l~~~~~~~l~~ 315 (345)
+ |++.+++...+
T Consensus 236 ~-lr~~l~~~~~~ 247 (268)
T PF00814_consen 236 Y-LREGLRKLCSE 247 (268)
T ss_dssp H-HHHHHHHHHHH
T ss_pred H-HHHHHHHHHHc
Confidence 2 46666665555
No 180
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=47.89 E-value=78 Score=32.36 Aligned_cols=75 Identities=15% Similarity=0.145 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCChHHHH
Q 019144 254 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGA 333 (345)
Q Consensus 254 ~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~i~~~~~a~~~GA 333 (345)
.++.+++-.+..+...+-.+-.... ..++.|++.||..+ ++.| .+ ++.-+... +++......++++||
T Consensus 383 ~~RAvlEgia~~~~~~l~~l~~~~g------~~~~~i~~~GGga~-s~~w--~Q-i~ADvlg~--pV~~~~~~e~~alGa 450 (520)
T PRK10939 383 LFRALEENAAIVSACNLQQIAAFSG------VFPSSLVFAGGGSK-GKLW--SQ-ILADVTGL--PVKVPVVKEATALGC 450 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC------CCCcEEEEeCCccc-CHHH--HH-HHHHhcCC--eeEEecccCchHHHH
Confidence 4566666666555555444432212 12467888888553 3433 33 33322221 233334456789999
Q ss_pred HHHHHHh
Q 019144 334 ALLAWNS 340 (345)
Q Consensus 334 a~la~~~ 340 (345)
|++|...
T Consensus 451 A~lA~~~ 457 (520)
T PRK10939 451 AIAAGVG 457 (520)
T ss_pred HHHHHHH
Confidence 9998643
No 181
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=47.86 E-value=3.7 Score=38.69 Aligned_cols=41 Identities=17% Similarity=0.155 Sum_probs=28.4
Q ss_pred CccceeeeecCCCCeEEeccCCCCcCCcC-----------cHHHHHHHHHHH
Q 019144 154 GTGTIAYGFTEDGRDARAAGAGPILGDWG-----------SGYGIAAQALTA 194 (345)
Q Consensus 154 GTG~~g~gi~~dG~~~~~Gg~G~~~gd~G-----------~a~~iG~~~~~~ 194 (345)
|.|++--|-+..|.-..+|++||+..+.. ..|.||++.|.+
T Consensus 135 G~giv~~G~l~~G~~g~aGEiGH~~v~~~~~~~~g~~~~~~~C~CG~~gclE 186 (303)
T PRK13310 135 GGGLVFNGKPISGRSYITGEFGHMRLPVDALTLLGWDAPLRRCGCGQKGCIE 186 (303)
T ss_pred EEEEEECCEEeeCCCCccccccceeecccccccccccCCCccCCCCCcchHH
Confidence 44555555666788788999999976542 367888876644
No 182
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=47.43 E-value=3.8e+02 Score=28.52 Aligned_cols=91 Identities=13% Similarity=-0.011 Sum_probs=55.2
Q ss_pred cCHHHHHHHHHHHHHHHHHHcCCCccccceeEEeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhccc--C-C
Q 019144 68 VGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGT--M-G 144 (345)
Q Consensus 68 ~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~~--~-g 144 (345)
.+|+++...+.+.+.+..++.- ...+..+.|++|-..+...+..+++..+.. ++ ..+.+-|+..+|+++-. . .
T Consensus 149 ~speel~a~iL~~lk~~ae~~l--g~~v~~~VITVPa~f~~~qR~a~~~Aa~~A-Gl-~v~~li~EptAAAlay~~~~~~ 224 (663)
T PTZ00400 149 YSPSQIGAFVLEKMKETAESYL--GRKVKQAVITVPAYFNDSQRQATKDAGKIA-GL-DVLRIINEPTAAALAFGMDKND 224 (663)
T ss_pred ECHHHHHHHHHHHHHHHHHHHh--CCCCceEEEEECCCCCHHHHHHHHHHHHHc-CC-ceEEEeCchHHHHHHhccccCC
Confidence 3577776666666655544321 135778999999998766555555544433 42 46899999998877521 1 1
Q ss_pred CCCeEEEEeCccceeeee
Q 019144 145 KLHGCVLIAGTGTIAYGF 162 (345)
Q Consensus 145 ~~~~v~v~~GTG~~g~gi 162 (345)
.+..+++=.|.|..-..+
T Consensus 225 ~~~vlV~DlGgGT~DvSv 242 (663)
T PTZ00400 225 GKTIAVYDLGGGTFDISI 242 (663)
T ss_pred CcEEEEEeCCCCeEEEEE
Confidence 223455557766544444
No 183
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=46.17 E-value=80 Score=31.99 Aligned_cols=76 Identities=16% Similarity=0.039 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCChHHH
Q 019144 253 EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVG 332 (345)
Q Consensus 253 ~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~i~~~~~a~~~G 332 (345)
..++.+++-.+..+-..+..+-.... ..++.|++.||..++ +.| .+.+...+.. ++++.....++++|
T Consensus 372 ~l~rAvlEgia~~~~~~~~~l~~~~g------~~~~~i~~~GGga~s-~~w--~Qi~ADv~g~---pv~~~~~~e~~alG 439 (493)
T TIGR01311 372 HIARAALEAIAFQTRDVLEAMEKDAG------VEITKLRVDGGMTNN-NLL--MQFQADILGV---PVVRPKVTETTALG 439 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC------CCCceEEEecccccC-HHH--HHHHHHhcCC---eeEecCCCcchHHH
Confidence 45556666666555555544432111 124678888886643 433 3333322221 23333445778999
Q ss_pred HHHHHHHh
Q 019144 333 AALLAWNS 340 (345)
Q Consensus 333 Aa~la~~~ 340 (345)
||+++...
T Consensus 440 aA~~a~~~ 447 (493)
T TIGR01311 440 AAYAAGLA 447 (493)
T ss_pred HHHHHHhh
Confidence 99998743
No 184
>COG2183 Tex Transcriptional accessory protein [Transcription]
Probab=46.00 E-value=57 Score=35.07 Aligned_cols=99 Identities=18% Similarity=0.137 Sum_probs=59.1
Q ss_pred cEEEEEecCccc-eeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEE
Q 019144 22 EVILGLDGGTTS-TVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCL 100 (345)
Q Consensus 22 ~~~lgvDiG~t~-~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igi 100 (345)
..++|+|=|.-. ++++++|- +|+.+.....-+.++. ...+... +.+..++.+.++. +.+||.
T Consensus 330 ~~~lglDPg~rtG~k~Avvd~---------tGk~l~~~~Iyp~~p~-~~~~~~~----~~l~~l~~~~~Ve---~iaIGn 392 (780)
T COG2183 330 KATLGLDPGFRTGCKVAVVDD---------TGKLLDTATIYPHPPV-NQSDKAE----ATLKDLIRKYKVE---LIAIGN 392 (780)
T ss_pred cceeecCCccccccEEEEEcC---------CCceeceeEEEcCCCc-cchHHHH----HHHHHHHHHhCce---EEEEec
Confidence 389999988544 89999998 9999988766443332 1234333 4444444555442 346666
Q ss_pred eecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhc
Q 019144 101 AVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALAS 140 (345)
Q Consensus 101 g~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~ 140 (345)
|++-.. .+ .-+.+.|++.-+...+..|-|++-+..+.
T Consensus 393 gTaSre--te-~fv~~vl~~~~~~~~~~viVsEagAsvYs 429 (780)
T COG2183 393 GTASRE--TE-KFVADVLKELPKEKVLKVIVSEAGASVYS 429 (780)
T ss_pred CCcchh--HH-HHHHHHHHhccCCCCcEEEEcccccchhc
Confidence 555433 22 23445566641112678888998876553
No 185
>PRK09698 D-allose kinase; Provisional
Probab=45.17 E-value=6.3 Score=37.07 Aligned_cols=38 Identities=16% Similarity=0.045 Sum_probs=25.6
Q ss_pred cceeeeecCCCCeEEeccCCCCcCC-cCcHHHHHHHHHH
Q 019144 156 GTIAYGFTEDGRDARAAGAGPILGD-WGSGYGIAAQALT 193 (345)
Q Consensus 156 G~~g~gi~~dG~~~~~Gg~G~~~gd-~G~a~~iG~~~~~ 193 (345)
|++--|-+..|.-..+|++||+..+ .+.-|.||+..|-
T Consensus 144 giv~~G~~~~G~~g~agEiGh~~v~~~~~~C~CG~~gcl 182 (302)
T PRK09698 144 AVWMNGAPWTGAHGVAGELGHIPLGDMTQHCGCGNPGCL 182 (302)
T ss_pred EEEECCEEeeCCCCCccccCceEeeCCCcccCCCCccch
Confidence 3333344456777789999999764 4567888877653
No 186
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=44.72 E-value=35 Score=32.28 Aligned_cols=31 Identities=23% Similarity=0.153 Sum_probs=27.4
Q ss_pred cEEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecC
Q 019144 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG 61 (345)
Q Consensus 22 ~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~ 61 (345)
.+++.+|-|+|++|+-+++. +|+++.+.+..
T Consensus 5 ~~~i~iDWGTT~~R~wL~~~---------dg~~l~~r~~~ 35 (306)
T COG3734 5 PAYIAIDWGTTNLRAWLVRG---------DGAVLAERRSE 35 (306)
T ss_pred ceEEEEecCCccEEEEEEcC---------Ccceeeeeccc
Confidence 38999999999999999998 89998887653
No 187
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=44.59 E-value=46 Score=27.13 Aligned_cols=38 Identities=8% Similarity=0.177 Sum_probs=33.7
Q ss_pred cCHHHHHHHHHHHHHHHHHHcCCCccccceeEEeecCC
Q 019144 68 VGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGV 105 (345)
Q Consensus 68 ~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~pG~ 105 (345)
-+.+++++...+++.+++++.++.+++|..|-+++.==
T Consensus 13 nt~e~I~~at~eLl~~ii~~N~l~~edivSv~FT~T~D 50 (117)
T TIGR01796 13 NEAEEIGEAVAELLTELMERNELTPEDLISVIFTVTED 50 (117)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEecCc
Confidence 46899999999999999999999999999999877643
No 188
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=44.45 E-value=39 Score=34.78 Aligned_cols=75 Identities=21% Similarity=0.184 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeC--CCCChHH
Q 019144 254 VANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIR--PKVEPAV 331 (345)
Q Consensus 254 ~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~i~~--~~~a~~~ 331 (345)
.||..+++....++..+..-.. . ..+.+.||+..+...= ...+++.+. .++-|-+ .+...++
T Consensus 264 saQ~~lE~l~l~~~~~~~~~~g--~---------~~L~~AGGVAlNv~~N--~~~l~~~~f---~dlfV~Pa~gD~G~Av 327 (555)
T COG2192 264 SAQAYLEELVLEMLRYLREETG--E---------DNLALAGGVALNVKAN--GKLLRRGLF---EDLFVQPAMGDAGLAV 327 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC--c---------cceEEccceeeeeeeh--HhHhhcccC---ceeEecCCCCCcchHH
Confidence 3467777777777777665433 1 5799999999875421 112222222 1222333 3566789
Q ss_pred HHHHHHHHhhhcc
Q 019144 332 GAALLAWNSFMNA 344 (345)
Q Consensus 332 GAa~la~~~~~~~ 344 (345)
|||+.+...+.++
T Consensus 328 GAAl~~~~~~~~~ 340 (555)
T COG2192 328 GAALAVKRELGGA 340 (555)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999877654
No 189
>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids. In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.
Probab=44.17 E-value=47 Score=27.06 Aligned_cols=37 Identities=8% Similarity=0.183 Sum_probs=33.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHcCCCccccceeEEeecC
Q 019144 68 VGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSG 104 (345)
Q Consensus 68 ~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~pG 104 (345)
-+.+++++...+++.+++++.++.+++|..|-+++.=
T Consensus 13 nt~e~I~~at~eLl~~i~~~N~l~~edivSv~FT~T~ 49 (117)
T cd02185 13 NTAEEILEATRELLEEIIERNNIKPEDIISVIFTVTP 49 (117)
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEeCC
Confidence 4689999999999999999999999999999887754
No 190
>PRK09557 fructokinase; Reviewed
Probab=42.51 E-value=3.2 Score=39.14 Aligned_cols=39 Identities=18% Similarity=0.000 Sum_probs=26.5
Q ss_pred CccceeeeecCCCCeEEeccCCCCcCC----------cCcHHHHHHHHH
Q 019144 154 GTGTIAYGFTEDGRDARAAGAGPILGD----------WGSGYGIAAQAL 192 (345)
Q Consensus 154 GTG~~g~gi~~dG~~~~~Gg~G~~~gd----------~G~a~~iG~~~~ 192 (345)
|.|++--|.+..|.-..+|++||+..+ +|..|.||++.|
T Consensus 135 G~giv~~G~l~~G~~g~aGEiGH~~v~~~~~~~~~~~~g~~c~cG~~Gc 183 (301)
T PRK09557 135 GAGVAINGRVHIGGNGIAGEWGHNPLPWMDEDELRYRNEVPCYCGKQGC 183 (301)
T ss_pred EEEEEECCEEEecCCCCCcccCceecccccccccccCCCCcCCCCCCCE
Confidence 444444455567887789999998763 355678887654
No 191
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=42.05 E-value=1.5e+02 Score=29.07 Aligned_cols=236 Identities=17% Similarity=0.150 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHcCCCccccceeEEeecCCC---ChhH--HHH----HHHHHHhhCCCCceEEEeCcHHHHHhccc--
Q 019144 74 RETIEKVMADALLKSGSNRSAVRAVCLAVSGVN---HPTD--QQR----ILNWLRDIFPGNVRLYVHNDALAALASGT-- 142 (345)
Q Consensus 74 ~~~l~~~i~~~~~~~~~~~~~i~~Igig~pG~~---~~~~--~~~----l~~~L~~~~~~~~pV~v~NDa~~a~~~~~-- 142 (345)
=+...+++.+++.++++++++|..| |.+|-. .|.. ... =...|.++++ +||.-+=-..=.++++.
T Consensus 67 g~~~a~av~~~l~~~~i~~~~I~~I--gsHGQTv~H~P~~~~~~TlQiG~~~~iA~~tg--i~vV~DFR~~Dia~GGqGA 142 (364)
T PF03702_consen 67 GELFADAVNQFLKKNGISPSDIDLI--GSHGQTVFHRPEGQHPFTLQIGDPAVIAERTG--ITVVSDFRSADIAAGGQGA 142 (364)
T ss_dssp HHHHHHHHHHHHHHCT--GGGEEEE--EE--EEEEEECCCTTTEEEEES-HHHHHHHHS--S-EEE--CHHHHHTTS-S-
T ss_pred HHHHHHHHHHHHHHcCCCcccccEE--EeCCcceecCcCCCCCceEecCCHHHHHHHHC--cCEEeechHHHHhccCCCC
Confidence 3446677888999999988888876 558852 1221 000 0356677787 77666555542233210
Q ss_pred ------------CCCCCeEEEEeCccceeeeecCC-CCeEEeccCCCCcCCcCcHHHHHHHHHHHHHHHhcCCCCCChhH
Q 019144 143 ------------MGKLHGCVLIAGTGTIAYGFTED-GRDARAAGAGPILGDWGSGYGIAAQALTAVIRAYDGRGPDTMLT 209 (345)
Q Consensus 143 ------------~g~~~~v~v~~GTG~~g~gi~~d-G~~~~~Gg~G~~~gd~G~a~~iG~~~~~~~~~~~~g~~~~~~~~ 209 (345)
.....-+++.+| |+.=.-++.. +.++- -|.|.+ ...++......-+.. ... .
T Consensus 143 PLvP~~~~~lf~~~~~~~~~lNIG-GIaNiT~l~~~~~~~~--------fDtGPG----N~liD~~~~~~~~~~-yD~-~ 207 (364)
T PF03702_consen 143 PLVPFFHQLLFRHPKKPRAVLNIG-GIANITFLPPGGDVIG--------FDTGPG----NMLIDAWIQRHTGLP-YDK-D 207 (364)
T ss_dssp --CHHHHHHHH--TTS-EEEEEES-SEEEEEEE-TTS--EE--------EEEEES----SHHHHHHHHHHCS-S-S-G-G
T ss_pred CcccHHHHHHhCCCCCCEEEEecC-CceEEEEecCCCCcee--------eccCcH----HHHHHHHHHHHhCCC-cCc-C
Confidence 112346788887 5533333333 33321 133332 222332222111110 000 0
Q ss_pred HHHHHHcCCCChhhHHHHhh------cCCChHHHh-cchHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 019144 210 SNILSTLELSSPDELIGWTY------VDPSWARIA-ALVPVVVSCA-EAGDEVANKILQDSVEELALSVKAVVQRLSLSG 281 (345)
Q Consensus 210 ~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~-~~~~~v~~~a-~~gD~~a~~il~~~~~~Lg~~l~~lv~~ld~~~ 281 (345)
+.+ +.-+. --+.+++.+. +.++++--. .|....++.. .+.......++....+.-+..|+..++.+.+
T Consensus 208 G~~-A~~G~-v~~~ll~~ll~~pyf~~~pPKStGrE~F~~~~l~~~l~~~~~~~~D~~aTlt~~TA~sI~~~i~~~~~-- 283 (364)
T PF03702_consen 208 GEW-AASGK-VNEELLDRLLSHPYFKRPPPKSTGREDFGLEWLQQILDKFSLSPEDILATLTEFTAQSIADAIRRFPP-- 283 (364)
T ss_dssp GHH-HHCS----HHHHHHHHTSHHHHS-SS----TTTSSHHHHHHHCTTSTT-HHHHHHHHHHHHHHHHHHHHHHH-T--
T ss_pred cHh-hCcCC-CCHHHHHHHhcCccccCCCCCcCCccccCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhcCC--
Confidence 011 11111 1122332221 112222111 1322233222 2222145677888888888888888888763
Q ss_pred CCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeC-------CCCChHHHHHHHHHHhhhc
Q 019144 282 EDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIR-------PKVEPAVGAALLAWNSFMN 343 (345)
Q Consensus 282 ~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~i~~-------~~~a~~~GAa~la~~~~~~ 343 (345)
.+..|+|+||=..+ + + |++.+++.+ |.++|.. ++.--++.=|+||.+.+.+
T Consensus 284 ----~~~~v~v~GGGa~N-~-~-L~~~L~~~l----~~~~v~~~~~~gi~~~~~EA~aFA~La~~~~~g 341 (364)
T PF03702_consen 284 ----QPDEVYVCGGGARN-P-F-LMERLQERL----PGIPVKTTDELGIPPDAKEAMAFAWLAYRRLNG 341 (364)
T ss_dssp ----T-EEEEEESGGGG--H-H-HHHHHHHH-----TTCEEEEGGGGTS-CCCHHHHHHHHHHHHHHCT
T ss_pred ----CCceEEEECCCcCC-H-H-HHHHHHhhC----CCCEEecHHHcCCCHHHHHHHHHHHHHHHHHcC
Confidence 24567777775543 2 2 355555554 4444432 2333567778888877754
No 192
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=41.64 E-value=94 Score=30.40 Aligned_cols=71 Identities=25% Similarity=0.392 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcc-EEEEcCcccCcccccchHHHHHHHHhh--CCCceeeC--CCCCh
Q 019144 255 ANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFP-LVMVGGVLEANRRWDIGREVVKCILRD--YPGAVPIR--PKVEP 329 (345)
Q Consensus 255 a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~-IVlgGgl~~~~~~~~l~~~~~~~l~~~--~~~~~i~~--~~~a~ 329 (345)
+|+.+++....+.+. ++..... .. |+++||++.+.. .-..|.+. +.++-|-+ .+...
T Consensus 142 ~Q~~~E~~v~~~~~~---~~~~~g~--------~~~L~laGGvaLN~~-------~N~~l~~~~~~~~v~V~Pa~gD~G~ 203 (360)
T PF02543_consen 142 AQKVLEEIVLHLVRH---LLERTGI--------DNNLCLAGGVALNCK-------ANGRLLEEPGFDNVFVPPAAGDAGL 203 (360)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHT----------SEEEEESGGGG-HH-------HHHHHHTSTT-SEEE--TTTSGGGH
T ss_pred HHHHHHHHHHHHHHH---HHHHhCC--------CCeEEEechHHHHHH-------HHHHHHhcCCCCeEEECCCCCCcch
Confidence 466677766666544 4444552 55 999999997643 23334443 22233333 24456
Q ss_pred HHHHHHHHHHhhhc
Q 019144 330 AVGAALLAWNSFMN 343 (345)
Q Consensus 330 ~~GAa~la~~~~~~ 343 (345)
++|||+.++..+.+
T Consensus 204 aiGaA~~~~~~~~~ 217 (360)
T PF02543_consen 204 AIGAALYAWHELGG 217 (360)
T ss_dssp HHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHhcC
Confidence 89999999866543
No 193
>PRK13328 pantothenate kinase; Reviewed
Probab=39.38 E-value=3.1e+02 Score=25.30 Aligned_cols=118 Identities=22% Similarity=0.176 Sum_probs=61.1
Q ss_pred EEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEee
Q 019144 23 VILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAV 102 (345)
Q Consensus 23 ~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~ 102 (345)
++|-||+|-|++|+++++- .++++........ ...+... ++ .+. ..+..+.++.
T Consensus 2 M~LliDiGNTriKwa~~~~---------~~~~~~~~~~~~~-----~~~~~~~-------~~-~~~----~~~~~i~vsS 55 (255)
T PRK13328 2 MILLIDAGNSRIKWAWADA---------GRPWVHSGAFAHG-----LDAALAP-------DW-SAL----PAPRGAWISN 55 (255)
T ss_pred cEEEEEeCccceeEEEEcC---------CCceeecchhccc-----chHHHHH-------HH-HhC----CCCCeEEEEe
Confidence 3899999999999999996 4455544322110 0111111 11 111 1234444432
Q ss_pred cCCCChhHHHHHHHHHHhhCC-CCceEEEe-CcH------------------HHHHhccc--CCCCCeEEEEeCccceee
Q 019144 103 SGVNHPTDQQRILNWLRDIFP-GNVRLYVH-NDA------------------LAALASGT--MGKLHGCVLIAGTGTIAY 160 (345)
Q Consensus 103 pG~~~~~~~~~l~~~L~~~~~-~~~pV~v~-NDa------------------~~a~~~~~--~g~~~~v~v~~GTG~~g~ 160 (345)
- ..|.....+.+.++++|+ . .|.++. .+. -+++++++ ...++.++|-+||=+---
T Consensus 56 V--~~p~~~~~l~~~l~~~~~~~-~~~~v~~~~~~~gl~~~Y~~p~~LG~DR~~a~vaA~~~~~~~~~lViD~GTA~TiD 132 (255)
T PRK13328 56 V--AGPAVAARLDALLAARWPGL-PVTWVRSRAAQCGVRNGYREPAQLGSDRWAGLIGARAAFPGEHLLIATFGTATTLD 132 (255)
T ss_pred c--CChhHHHHHHHHHHHHhCCC-CeEEEecCccCCCceeCCCChhhccHHHHHHHHHHHHhcCCCCEEEEEcCCceEEE
Confidence 2 334334467788888774 2 344443 111 12233332 223467888899887554
Q ss_pred eecCCCCeE
Q 019144 161 GFTEDGRDA 169 (345)
Q Consensus 161 gi~~dG~~~ 169 (345)
.+..+|+..
T Consensus 133 ~v~~~g~~l 141 (255)
T PRK13328 133 ALRADGRFA 141 (255)
T ss_pred EEcCCCcEe
Confidence 444566665
No 194
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=39.33 E-value=4.6e+02 Score=27.25 Aligned_cols=90 Identities=13% Similarity=-0.025 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCccccceeEEeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhcc-c-C-C-
Q 019144 69 GEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASG-T-M-G- 144 (345)
Q Consensus 69 ~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~-~-~-g- 144 (345)
+|+++...+.+.+.+..++.- ...+..+.|++|-..+...+..+++..+. .++ ..+.+-|+..+|+++- . . .
T Consensus 106 ~peel~a~~L~~l~~~a~~~~--~~~v~~~VItVPa~f~~~qR~a~~~Aa~~-AGl-~v~~li~EptAAAl~y~~~~~~~ 181 (595)
T TIGR02350 106 TPQEISAMILQKLKKDAEAYL--GEKVTEAVITVPAYFNDAQRQATKDAGKI-AGL-EVLRIINEPTAAALAYGLDKSKK 181 (595)
T ss_pred cHHHHHHHHHHHHHHHHHHHh--CCCCCeEEEEECCCCCHHHHHHHHHHHHH-cCC-ceEEEecchHHHHHHHhhcccCC
Confidence 567666666655555444321 12467789999999876655555554433 342 4578999999887741 1 1 1
Q ss_pred CCCeEEEEeCccceeeee
Q 019144 145 KLHGCVLIAGTGTIAYGF 162 (345)
Q Consensus 145 ~~~~v~v~~GTG~~g~gi 162 (345)
.+..+++=.|.|..-..+
T Consensus 182 ~~~vlV~D~Gggt~dvsv 199 (595)
T TIGR02350 182 DEKILVFDLGGGTFDVSI 199 (595)
T ss_pred CcEEEEEECCCCeEEEEE
Confidence 223445556766533333
No 195
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=36.99 E-value=1.3e+02 Score=30.56 Aligned_cols=74 Identities=20% Similarity=0.157 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCChHHH
Q 019144 253 EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVG 332 (345)
Q Consensus 253 ~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~i~~~~~a~~~G 332 (345)
..++.+++-.+-.+...+..+...... .+..|++.||-.+. +.| .+.+-..+.. ++.+.....+++.|
T Consensus 374 ~l~ravlEgva~~l~~~~~~l~~~~g~------~~~~i~~~GGgars-~~w--~Qi~Ad~~g~---~v~~~~~~e~~a~g 441 (502)
T COG1070 374 HLARAVLEGVAFALADGLEALEELGGK------PPSRVRVVGGGARS-PLW--LQILADALGL---PVVVPEVEEAGALG 441 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC------CccEEEEECCcccC-HHH--HHHHHHHcCC---eeEecCcccchHHH
Confidence 678899999999999998888877553 25578888887755 333 3333222221 12222334566565
Q ss_pred HHHHHH
Q 019144 333 AALLAW 338 (345)
Q Consensus 333 Aa~la~ 338 (345)
+|.++.
T Consensus 442 ~A~~~~ 447 (502)
T COG1070 442 GAALAA 447 (502)
T ss_pred HHHHHH
Confidence 555544
No 196
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=36.95 E-value=1.2e+02 Score=26.00 Aligned_cols=58 Identities=16% Similarity=0.122 Sum_probs=36.6
Q ss_pred EEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCC
Q 019144 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGS 90 (345)
Q Consensus 24 ~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 90 (345)
+||||=|...+=+++++..+. .-+.+......++ . .+..+-+..|.+.+.+++++..+
T Consensus 1 ILGIDPGl~~tG~gvi~~~~~------~~~~v~~G~I~t~-~--~~~~~RL~~I~~~l~~~i~~y~P 58 (156)
T TIGR00228 1 ILGIDPGSRVTGYGVIRQVGR------QLSYLGSGCIRTK-V--DDLPSRLKLIYAGVTEIITQFQP 58 (156)
T ss_pred CEeECcccccccEEEEEecCC------eEEEEEeeEEECC-C--CCHHHHHHHHHHHHHHHHHHhCC
Confidence 589999999999999997211 1222333333222 1 24556677777777777776654
No 197
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=35.26 E-value=3e+02 Score=26.13 Aligned_cols=28 Identities=18% Similarity=-0.012 Sum_probs=22.4
Q ss_pred EEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecC
Q 019144 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAG 61 (345)
Q Consensus 24 ~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~ 61 (345)
++-||+|+..|.+.++.- |.++.....+
T Consensus 190 ~~lvdiG~~~t~l~i~~~----------g~~~~~r~i~ 217 (348)
T TIGR01175 190 AALVDIGATSSTLNLLHP----------GRMLFTREVP 217 (348)
T ss_pred EEEEEECCCcEEEEEEEC----------CeEEEEEEee
Confidence 889999999999999974 6766655443
No 198
>PF05035 DGOK: 2-keto-3-deoxy-galactonokinase; InterPro: IPR007729 2-keto-3-deoxy-galactonokinase 2.7.1.58 from EC is a bacterial transferase that catalyses the second step in D-galactonate degradation. ATP + 2-dehydro-3-deoxy-D-galactonate = ADP + 2-dehydro-3-deoxy-D-galactonate 6-phosphate D-Galactonate is catabolized in saprophytic mycobacteria to give pyruvate and glyceraldehyde-3-phosphate by a pathway that involves galactonate dehydratase, 2-keto-3-deoxy-galactonate kinase, and 6-phospho-2-keto-3-deoxy-galactonate aldolase [].; PDB: 3R1X_D 3T69_B.
Probab=34.43 E-value=22 Score=33.71 Aligned_cols=127 Identities=17% Similarity=0.184 Sum_probs=59.0
Q ss_pred ecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccceeEEeecCCCC
Q 019144 28 DGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNH 107 (345)
Q Consensus 28 DiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~pG~~~ 107 (345)
|.|+|++|+-++|. +|+++.+.+.+.- ......+.+-+.+.+++.+.+.. . .+--|.-|+.|-..
T Consensus 1 DWGTSnlR~~l~~~---------~g~vl~~~~~~~G-i~~~~~~~f~~~l~~~~~~w~~~---~--~~pvi~~GMigS~~ 65 (287)
T PF05035_consen 1 DWGTSNLRAWLMDE---------DGQVLAERSSPVG-ILNLAPDGFEAVLRELLGDWLAA---P--PLPVIASGMIGSRQ 65 (287)
T ss_dssp EE-SS-EEEEEE-C---------TTEEEEEEEES---CCHHCCH-HCHHHHHHCCCTT-S---T--T--EEEECGGGSTT
T ss_pred CCchhhhhhheecC---------CCcEEeeecCCcC-hhhcCcccHHHHHHHHHHHHhhc---C--CCeEEEeCCccccc
Confidence 78999999999998 8999998875322 11123334555555555555543 1 12223344444321
Q ss_pred ----------hhHHHHHHHHHHhhCCCCceEEEeC---------cH----HHHHhccc--CCCCCeEEEEeCccceeeee
Q 019144 108 ----------PTDQQRILNWLRDIFPGNVRLYVHN---------DA----LAALASGT--MGKLHGCVLIAGTGTIAYGF 162 (345)
Q Consensus 108 ----------~~~~~~l~~~L~~~~~~~~pV~v~N---------Da----~~a~~~~~--~g~~~~v~v~~GTG~~g~gi 162 (345)
|..-..+.+.+...-....||++-= |+ ..-++|.. ....+.+++.-||-+ =-..
T Consensus 66 Gw~Eapy~~~Pa~l~~la~~~~~~~~~~~~v~ivPGl~~~~~~~DVMRGEEtqi~G~l~~~~~~~~~i~LPGTHs-KWv~ 144 (287)
T PF05035_consen 66 GWQEAPYLPCPAGLADLAAALVRVADPGRPVHIVPGLKQRQGSPDVMRGEETQIAGALSLNPDGDGLICLPGTHS-KWVR 144 (287)
T ss_dssp SSS---EEESSEECCHCHHC-EEECSSSTTEEE--EEEEETTCCEEESSHHHHHHHHHCCCHSSECEEEE-STTE-EEEE
T ss_pred ccccCCccCCCCChhHHHhhcEEecCCCceEEEEcCcCcCCCCccccccHHHHHHHHHhcCCCCCeEEEccCCCc-eEEE
Confidence 1110123333332211012333221 11 12222211 335678999999997 4456
Q ss_pred cCCCCeEE
Q 019144 163 TEDGRDAR 170 (345)
Q Consensus 163 ~~dG~~~~ 170 (345)
+.+|++..
T Consensus 145 v~~g~I~~ 152 (287)
T PF05035_consen 145 VEDGRIVS 152 (287)
T ss_dssp EETTEEEE
T ss_pred ECCCcEEE
Confidence 67898864
No 199
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=34.30 E-value=5.7e+02 Score=26.83 Aligned_cols=91 Identities=14% Similarity=-0.004 Sum_probs=54.4
Q ss_pred cCHHHHHHHHHHHHHHHHHHcCCCccccceeEEeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhcc-c-C-C
Q 019144 68 VGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASG-T-M-G 144 (345)
Q Consensus 68 ~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~-~-~-g 144 (345)
..|+++...+.+.+.+..++.- ...+..+.|++|-..+...+..+++..+. .++ ..+.+-|+..+|+++- . . .
T Consensus 108 ~~peel~a~iL~~lk~~ae~~~--g~~v~~~VItVPa~f~~~qR~a~~~Aa~~-AGl-~v~~li~EptAAAl~y~~~~~~ 183 (627)
T PRK00290 108 YTPQEISAMILQKLKKDAEDYL--GEKVTEAVITVPAYFNDAQRQATKDAGKI-AGL-EVLRIINEPTAAALAYGLDKKG 183 (627)
T ss_pred EcHHHHHHHHHHHHHHHHHHHh--CCCCceEEEEECCCCCHHHHHHHHHHHHH-cCC-ceEEEecchHHHHHHhhhccCC
Confidence 3577776666666655544321 13477889999999876655555554433 342 4578999999887742 1 1 1
Q ss_pred CCCeEEEEeCccceeeee
Q 019144 145 KLHGCVLIAGTGTIAYGF 162 (345)
Q Consensus 145 ~~~~v~v~~GTG~~g~gi 162 (345)
.+..+++=+|.|..-..+
T Consensus 184 ~~~vlV~D~GggT~dvsv 201 (627)
T PRK00290 184 DEKILVYDLGGGTFDVSI 201 (627)
T ss_pred CCEEEEEECCCCeEEEEE
Confidence 233455556766544334
No 200
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=33.87 E-value=1.2e+02 Score=31.31 Aligned_cols=47 Identities=15% Similarity=0.000 Sum_probs=27.2
Q ss_pred CccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCChHHHHHHHHHH
Q 019144 287 SFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVGAALLAWN 339 (345)
Q Consensus 287 p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~i~~~~~a~~~GAa~la~~ 339 (345)
++.|.+.||..+. +.| .+.+ .-+... +++......++++|||++|..
T Consensus 444 ~~~i~~~GGga~s-~~w--~Qi~-ADvlg~--pV~~~~~~e~~alGaA~lA~~ 490 (541)
T TIGR01315 444 IKSIFMSGGQCQN-PLL--MQLI-ADACDM--PVLIPYVNEAVLHGAAMLGAK 490 (541)
T ss_pred ccEEEEecCcccC-HHH--HHHH-HHHHCC--eeEecChhHHHHHHHHHHHHH
Confidence 4678899986643 433 3333 333321 233333456789999999864
No 201
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=33.84 E-value=31 Score=37.55 Aligned_cols=20 Identities=40% Similarity=0.370 Sum_probs=18.7
Q ss_pred cEEEEEecCccceeeEEEcC
Q 019144 22 EVILGLDGGTTSTVCICMPV 41 (345)
Q Consensus 22 ~~~lgvDiG~t~~~~~l~d~ 41 (345)
.|+||+|||++++=++++|.
T Consensus 1 ~y~LGLDiGt~SvGWAVv~~ 20 (805)
T TIGR01865 1 EYILGLDIGIASVGWAIVED 20 (805)
T ss_pred CceeEEeecccceeEEEEec
Confidence 38999999999999999998
No 202
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=33.32 E-value=1.6e+02 Score=29.80 Aligned_cols=74 Identities=15% Similarity=0.036 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCC-CCChHH
Q 019144 253 EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRP-KVEPAV 331 (345)
Q Consensus 253 ~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~i~~~-~~a~~~ 331 (345)
..++.+++-.+..+...+-.+-.... ..++.|.+.||...+ +.| .+.+...+. ..|... ..++++
T Consensus 348 ~l~RAvlEgva~~~r~~l~~l~~~~g------~~~~~i~~~GGga~s-~~w--~Qi~ADvlg-----~pV~~~~~ea~al 413 (471)
T PRK10640 348 ELARCIFDSLALLYADVLHELAQLRG------EPFSQLHIVGGGCQN-ALL--NQLCADACG-----IRVIAGPVEASTL 413 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC------CCcceEEEECChhhh-HHH--HHHHHHHhC-----CCeeeCChhHHHH
Confidence 46677777777777777666544312 124678888886543 333 333332222 222322 347789
Q ss_pred HHHHHHHHh
Q 019144 332 GAALLAWNS 340 (345)
Q Consensus 332 GAa~la~~~ 340 (345)
|||+++...
T Consensus 414 Gaa~~a~~a 422 (471)
T PRK10640 414 GNIGIQLMT 422 (471)
T ss_pred HHHHHHHHH
Confidence 999998754
No 203
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=33.19 E-value=10 Score=35.88 Aligned_cols=34 Identities=21% Similarity=0.082 Sum_probs=24.7
Q ss_pred eecCCCCeEEeccCCCCcCCc-C-cHHHHHHHHHHH
Q 019144 161 GFTEDGRDARAAGAGPILGDW-G-SGYGIAAQALTA 194 (345)
Q Consensus 161 gi~~dG~~~~~Gg~G~~~gd~-G-~a~~iG~~~~~~ 194 (345)
|-...|.-..+|++||+..++ | ..|.||++.|.+
T Consensus 143 G~~~~G~~g~agEiGh~~v~~~g~~~C~cG~~gclE 178 (318)
T TIGR00744 143 GEIRHGHNGVGAEIGHIRMVPDGRLLCNCGKQGCIE 178 (318)
T ss_pred CEEeecCCCCCcccCceEeCCCCCcccCCCCcchHH
Confidence 444568878899999997654 5 568888876644
No 204
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=31.20 E-value=1.6e+02 Score=29.28 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=44.6
Q ss_pred EEEec-CccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCccccc-----ee
Q 019144 25 LGLDG-GTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRSAVR-----AV 98 (345)
Q Consensus 25 lgvDi-G~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~-----~I 98 (345)
+|+|+ ||+++.+-+-+. ++-.+.-...... .-.++.+++..+.+++=+.+.|.....|. .|
T Consensus 1 lGlDl~GG~~~~~~~~~~---------~~~~~~~~~~~~~----~~~~~~~~~~~~ii~~Rv~~~Gv~e~~i~~~G~~~I 67 (397)
T TIGR01129 1 LGLDLRGGARVLLEVDMS---------TAVVLKLSEAEVN----AIRKDALEQVITILRNRVNALGVSEPVVQRQGKDRI 67 (397)
T ss_pred CcccCCCCeEEEEEEcCC---------cccccccchhccc----cccHHHHHHHHHHHHHHHhhcCCCCcEEEEeCCceE
Confidence 47898 888888876543 3211111111111 11245777778888887887776654442 57
Q ss_pred EEeecCCCChhH
Q 019144 99 CLAVSGVNHPTD 110 (345)
Q Consensus 99 gig~pG~~~~~~ 110 (345)
-|-+||..+++.
T Consensus 68 ~V~lPg~~d~~~ 79 (397)
T TIGR01129 68 VVELPGVTDTSR 79 (397)
T ss_pred EEECCCCCCHHH
Confidence 899999887754
No 205
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=30.74 E-value=1.8e+02 Score=29.03 Aligned_cols=75 Identities=15% Similarity=0.072 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeCCCCChHHH
Q 019144 253 EVANKILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIRPKVEPAVG 332 (345)
Q Consensus 253 ~~a~~il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~i~~~~~a~~~G 332 (345)
..++.+++-.+..+...+-.+-..-. ..+..|++.||... ++.| .+.+-..+.. ++. .....++++|
T Consensus 360 ~l~RAv~Egva~~~r~~~e~l~~~~~------~~~~~i~~~GGga~-s~~w--~Qi~ADvlg~---pV~-~~~~e~~a~G 426 (454)
T TIGR02627 360 ELARCIFDSLALLYRQVLLELAELRG------KPISQLHIVGGGSQ-NAFL--NQLCADACGI---RVI-AGPVEASTLG 426 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC------CCcCEEEEECChhh-hHHH--HHHHHHHhCC---ceE-cCCchHHHHH
Confidence 45566666666666555555433211 12567888888653 3433 3333333321 122 1234578999
Q ss_pred HHHHHHHh
Q 019144 333 AALLAWNS 340 (345)
Q Consensus 333 Aa~la~~~ 340 (345)
||+++...
T Consensus 427 aA~~a~~~ 434 (454)
T TIGR02627 427 NIGVQLMA 434 (454)
T ss_pred HHHHHHHh
Confidence 99998753
No 206
>PRK13410 molecular chaperone DnaK; Provisional
Probab=30.20 E-value=40 Score=35.86 Aligned_cols=47 Identities=28% Similarity=0.226 Sum_probs=29.0
Q ss_pred CCccEEEEcCcccCcccccchHHHHHHHHhhCCC--ceeeCCCCChHHHHHHHHHH
Q 019144 286 HSFPLVMVGGVLEANRRWDIGREVVKCILRDYPG--AVPIRPKVEPAVGAALLAWN 339 (345)
Q Consensus 286 ~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~--~~i~~~~~a~~~GAa~la~~ 339 (345)
+...|+|.||-.. ++.+++.+.+.++. ..-+.++.+.++|||+.|..
T Consensus 328 dId~VvLVGGssR-------iP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~ 376 (668)
T PRK13410 328 DIDEVVLVGGSTR-------MPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGI 376 (668)
T ss_pred hCcEEEEECCccc-------cHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHh
Confidence 3467889998764 33445555554421 22234567889999988753
No 207
>PLN02295 glycerol kinase
Probab=29.84 E-value=1.5e+02 Score=30.31 Aligned_cols=31 Identities=23% Similarity=0.141 Sum_probs=20.9
Q ss_pred ceEEE-eCcHHHHHhcccCCCCCeEEEEeCccc
Q 019144 126 VRLYV-HNDALAALASGTMGKLHGCVLIAGTGT 157 (345)
Q Consensus 126 ~pV~v-~NDa~~a~~~~~~g~~~~v~v~~GTG~ 157 (345)
.||.. ..|..++++|.-. ...-+++++||+.
T Consensus 241 ~pV~~g~~D~~aa~~G~G~-~~g~~~~~~GTs~ 272 (512)
T PLN02295 241 VPIAGCLGDQHAAMLGQRC-RPGEAKSTYGTGC 272 (512)
T ss_pred CcEEEEechHHHHHhhCcC-CCCCeEEEEcccc
Confidence 66554 6788888776322 3355788999985
No 208
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=29.46 E-value=41 Score=35.38 Aligned_cols=20 Identities=35% Similarity=0.463 Sum_probs=17.8
Q ss_pred cEEEEEecCccceeeEEEcC
Q 019144 22 EVILGLDGGTTSTVCICMPV 41 (345)
Q Consensus 22 ~~~lgvDiG~t~~~~~l~d~ 41 (345)
..++|||+|+|++++++++.
T Consensus 2 ~~viGIDlGTt~s~va~~~~ 21 (627)
T PRK00290 2 GKIIGIDLGTTNSCVAVMEG 21 (627)
T ss_pred CcEEEEEeCcccEEEEEEEC
Confidence 36899999999999999874
No 209
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=28.41 E-value=8.1e+02 Score=26.74 Aligned_cols=92 Identities=13% Similarity=0.093 Sum_probs=57.2
Q ss_pred cCHHHHHHHHHHHHHHHHHHcCCCccccceeEEeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhc-c-c---
Q 019144 68 VGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALAS-G-T--- 142 (345)
Q Consensus 68 ~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~-~-~--- 142 (345)
++.++++.-+......+.+..-. ..|.-+.|.+|.+.+...+..|.+. .+..+. .-+.+-||--++++- + .
T Consensus 133 ysvEellAMil~~a~~~ae~~a~--~~Ikd~ViTVP~~F~qaeR~all~A-a~iagl-~vLqLind~~a~Al~ygv~rRk 208 (902)
T KOG0104|consen 133 YSVEELLAMILQYAKSLAEEYAK--QPIKDMVITVPPFFNQAERRALLQA-AQIAGL-NVLQLINDGTAVALNYGVFRRK 208 (902)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHh--cchhheEEeCCcccCHHHHHHHHHH-HHhcCc-hhhhhhccchHHHhhhhhhccc
Confidence 45677666666555555444322 2478889999999887665444332 122231 357788998877652 1 1
Q ss_pred ---CCCCCeEEEEeCccceeeeec
Q 019144 143 ---MGKLHGCVLIAGTGTIAYGFT 163 (345)
Q Consensus 143 ---~g~~~~v~v~~GTG~~g~gi~ 163 (345)
...++.+++=+|.|+.-+.|+
T Consensus 209 ~i~~~~q~~i~YDMGs~sT~Ativ 232 (902)
T KOG0104|consen 209 EINETPQHYIFYDMGSGSTSATIV 232 (902)
T ss_pred cCCCCceEEEEEecCCCceeEEEE
Confidence 124567888899998777665
No 210
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=28.15 E-value=5.4 Score=34.18 Aligned_cols=40 Identities=23% Similarity=0.194 Sum_probs=25.4
Q ss_pred CccceeeeecCCCCeEEeccCCCCcCCc-CcHHHHHHHHHH
Q 019144 154 GTGTIAYGFTEDGRDARAAGAGPILGDW-GSGYGIAAQALT 193 (345)
Q Consensus 154 GTG~~g~gi~~dG~~~~~Gg~G~~~gd~-G~a~~iG~~~~~ 193 (345)
|.|++--|-+..|.-..+|++||+..++ +-.|.||++.|-
T Consensus 130 G~~ii~~g~i~~G~~~~aGeigh~~~~~~~~~c~cG~~GCl 170 (179)
T PF00480_consen 130 GAGIIINGKIYRGSNGFAGEIGHMPVDPNGEPCYCGNRGCL 170 (179)
T ss_dssp EEEEEETTEEETTTTS-TTGGGGSBSSTTSSB-TTSSBSBH
T ss_pred CcceecccccccCCCccccceeeeeccCCCCcCCCCCcCcH
Confidence 3333333455678777899999998765 556888877443
No 211
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=27.50 E-value=4.4e+02 Score=25.66 Aligned_cols=96 Identities=14% Similarity=0.089 Sum_probs=61.3
Q ss_pred EEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCc---------------------------ccc-------C
Q 019144 24 ILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNH---------------------------NSV-------G 69 (345)
Q Consensus 24 ~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~---------------------------~~~-------~ 69 (345)
++-+|||.|++.+.++- +|+++.....+.... ... -
T Consensus 195 vav~~Igat~s~l~vi~----------~gk~ly~r~~~~g~~Qlt~~i~r~~~L~~~~a~~~k~~~~~P~~y~~~vl~~f 264 (354)
T COG4972 195 VAVFDIGATSSELLVIQ----------DGKILYTREVPVGTDQLTQEIQRAYSLTEEKAEEIKRGGTLPTDYGSEVLRPF 264 (354)
T ss_pred heeeeecccceEEEEEE----------CCeeeeEeeccCcHHHHHHHHHHHhCCChhHhHHHHhCCCCCCchhHHHHHHH
Confidence 67788999999988775 588888876643210 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCccccceeEEeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHH
Q 019144 70 EDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAA 137 (345)
Q Consensus 70 ~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a 137 (345)
.+++...|.+.|.=++.+++. -+|..|.++=+|..- ..|.+.+.++++ .|+.+.|-...+
T Consensus 265 ~~~l~~ei~Rslqfy~~~s~~--~~id~i~LaGggA~l----~gL~~~i~qrl~--~~t~vanPf~~~ 324 (354)
T COG4972 265 LGELTQEIRRSLQFYLSQSEM--VDIDQILLAGGGASL----EGLAAAIQQRLS--IPTEVANPFAYM 324 (354)
T ss_pred HHHHHHHHHHHHHHHHhcccc--ceeeEEEEecCCcch----hhHHHHHHHHhC--CCeEeeCHHHHH
Confidence 123344444444444444432 357788886666543 247888899997 899999985544
No 212
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=26.77 E-value=6e+02 Score=24.70 Aligned_cols=90 Identities=18% Similarity=0.157 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHcCCCcc--ccceeEEeecCCCChhHHHHHHHHHHhhCCCCceEEEeCcHHHHHhccc---CCCCCeE
Q 019144 75 ETIEKVMADALLKSGSNRS--AVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLYVHNDALAALASGT---MGKLHGC 149 (345)
Q Consensus 75 ~~l~~~i~~~~~~~~~~~~--~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~v~NDa~~a~~~~~---~g~~~~v 149 (345)
+....+++-|+++...+.. ..-.|.+++|.-...-.+..+++..++.-. ..|++....-+|+.+.. ...+..+
T Consensus 79 ~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~~~aGa--~~V~lieEp~aAAIGaglpi~ep~G~m 156 (342)
T COG1077 79 EVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAESAGA--REVYLIEEPMAAAIGAGLPIMEPTGSM 156 (342)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHHHhccC--ceEEEeccHHHHHhcCCCcccCCCCCE
Confidence 4444555555554432221 122588999999877676778887777654 78999999999988742 2333355
Q ss_pred EEEeCccceeeeecCCC
Q 019144 150 VLIAGTGTIAYGFTEDG 166 (345)
Q Consensus 150 ~v~~GTG~~g~gi~~dG 166 (345)
++=+|.|..-.+++..|
T Consensus 157 vvDIGgGTTevaVISlg 173 (342)
T COG1077 157 VVDIGGGTTEVAVISLG 173 (342)
T ss_pred EEEeCCCceeEEEEEec
Confidence 55566565444444333
No 213
>COG4401 AroH Chorismate mutase [Amino acid transport and metabolism]
Probab=25.54 E-value=1.8e+02 Score=23.49 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=30.9
Q ss_pred cCHHHHHHHHHHHHHHHHHHcCCCccccceeEEeec
Q 019144 68 VGEDAARETIEKVMADALLKSGSNRSAVRAVCLAVS 103 (345)
Q Consensus 68 ~~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~p 103 (345)
.+++++++...+++++..++.-.+++++..+-+++.
T Consensus 15 nt~eeI~~at~eLl~~i~~~N~~~pedv~sv~~svT 50 (125)
T COG4401 15 NTEEEILDATKELLEEIEEENITDPEDVVSVILSVT 50 (125)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCChhheeeEEEEec
Confidence 478999999999999999998888888888777654
No 214
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.19 E-value=2.7e+02 Score=26.11 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=19.5
Q ss_pred CccEEEEEecCccceeeEEEcC
Q 019144 20 GREVILGLDGGTTSTVCICMPV 41 (345)
Q Consensus 20 ~~~~~lgvDiG~t~~~~~l~d~ 41 (345)
|...++|+|-|+|-+++++.|-
T Consensus 1 ~~m~fVGiDHGTsgi~~ai~d~ 22 (332)
T COG4020 1 MTMMFVGIDHGTSGIKFAIYDG 22 (332)
T ss_pred CceEEEeecCCCcceEEEEEcC
Confidence 3448999999999999999996
No 215
>PRK11678 putative chaperone; Provisional
Probab=25.16 E-value=46 Score=33.57 Aligned_cols=67 Identities=12% Similarity=0.023 Sum_probs=37.0
Q ss_pred ccceeEEeecCCCC-----hhHHHH---HHHHHHhhCCCCceEEEeCcHHHHHhc-cc-CC-CCCeEEEEeCccceeeee
Q 019144 94 AVRAVCLAVSGVNH-----PTDQQR---ILNWLRDIFPGNVRLYVHNDALAALAS-GT-MG-KLHGCVLIAGTGTIAYGF 162 (345)
Q Consensus 94 ~i~~Igig~pG~~~-----~~~~~~---l~~~L~~~~~~~~pV~v~NDa~~a~~~-~~-~g-~~~~v~v~~GTG~~g~gi 162 (345)
.+..+.|++|-..+ ...... +.+.-+ .-++ ..+.+.|+..+|+++ +. .. .+..+++=.|.|..-..+
T Consensus 148 ~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~-~AG~-~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Sv 225 (450)
T PRK11678 148 AITQAVIGRPVNFQGLGGEEANRQAEGILERAAK-RAGF-KDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSM 225 (450)
T ss_pred CCCcEEEEECCccccCCcchhHHHHHHHHHHHHH-HcCC-CEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEE
Confidence 46778899998754 222211 233222 2343 468999999988774 21 11 223455557766543444
No 216
>PHA02533 17 large terminase protein; Provisional
Probab=23.89 E-value=6e+02 Score=26.30 Aligned_cols=75 Identities=12% Similarity=0.070 Sum_probs=47.4
Q ss_pred ccEEEEEecC----ccceeeEEEcCccCCCCCCCC---CCeeEEEecCCCCccccCHHHHHHHHHHHHHHHHHHcCCCcc
Q 019144 21 REVILGLDGG----TTSTVCICMPVISMSDSLPDP---LPVLARAAAGCSNHNSVGEDAARETIEKVMADALLKSGSNRS 93 (345)
Q Consensus 21 ~~~~lgvDiG----~t~~~~~l~d~~~~~~~~~~~---g~i~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~ 93 (345)
..|++|+|.+ +++..+.++|. + ++++.+.+.-. .++.+..+.|. ++....
T Consensus 314 ~~y~ig~D~a~G~~~D~s~~~V~~~---------~~~~~r~v~~~~~~~-----~~~~~~a~~I~----~l~~~Y----- 370 (534)
T PHA02533 314 HKYIATLDVSEGRGQDYSALHIIDI---------TEYPYKQVAVYHNNT-----ISPLILPDIIV----DYLMEY----- 370 (534)
T ss_pred ceEEEEEECCCCCCCceeEEEEEcc---------CCCCcEEEEEEecCC-----CCHHHHHHHHH----HHHHHh-----
Confidence 3599999987 67888899997 5 77777765321 24444444444 444433
Q ss_pred ccceeEEeecCCCChhHHHHHHHHHHhhCC
Q 019144 94 AVRAVCLAVSGVNHPTDQQRILNWLRDIFP 123 (345)
Q Consensus 94 ~i~~Igig~pG~~~~~~~~~l~~~L~~~~~ 123 (345)
.+..|+|=..|.. ..+.+.|+..++
T Consensus 371 n~a~i~id~tg~G-----~~V~e~L~~~~~ 395 (534)
T PHA02533 371 NEAPVYIELNSTG-----VSVAKSLYYDLE 395 (534)
T ss_pred CceEEEEecCCCc-----HHHHHHHHHhcc
Confidence 3445777555544 347777777765
No 217
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=23.18 E-value=1.6e+02 Score=26.95 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHHHHHHHHHcCCCccccceeEEeecCCCChhHHHHHHHHHHhhCCCCceEE
Q 019144 69 GEDAARETIEKVMADALLKSGSNRSAVRAVCLAVSGVNHPTDQQRILNWLRDIFPGNVRLY 129 (345)
Q Consensus 69 ~~~~~~~~l~~~i~~~~~~~~~~~~~i~~Igig~pG~~~~~~~~~l~~~L~~~~~~~~pV~ 129 (345)
+++++-..+...+++.+++-+ ...|.+|.+|+.+ +.+.|++.|+ .||.
T Consensus 154 ~~~~~~~~l~~~~~~a~~edg-----AeaIiLGCAGms~------la~~Lq~~~g--vPVI 201 (230)
T COG4126 154 PPEEAEALLVIEAAEALKEDG-----AEAIILGCAGMSD------LADQLQKAFG--VPVI 201 (230)
T ss_pred ChHHHHHHHHHHHHHHhhhcC-----CCEEEEcCccHHH------HHHHHHHHhC--CCcc
Confidence 456666666776777766543 4578999999874 6888899997 7864
No 218
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=23.10 E-value=57 Score=34.03 Aligned_cols=47 Identities=19% Similarity=0.219 Sum_probs=28.6
Q ss_pred CCccEEEEcCcccCcccccchHHHHHHHHhhCC--CceeeCCCCChHHHHHHHHHH
Q 019144 286 HSFPLVMVGGVLEANRRWDIGREVVKCILRDYP--GAVPIRPKVEPAVGAALLAWN 339 (345)
Q Consensus 286 ~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~--~~~i~~~~~a~~~GAa~la~~ 339 (345)
+...|+|.||.... +.+++.+.+.++ ...-..++.+.+.|||+.|..
T Consensus 324 ~i~~V~LvGGssri-------P~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~ 372 (595)
T TIGR02350 324 DIDEVILVGGSTRI-------PAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGV 372 (595)
T ss_pred HCcEEEEECCcccC-------hHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHH
Confidence 34578999997753 234444444432 122234567889999998764
No 219
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=22.59 E-value=3.7e+02 Score=28.86 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCccEEEEcCcccCcccccchHHHHHHHHhhCCCceee-----C-CCCChHH
Q 019144 258 ILQDSVEELALSVKAVVQRLSLSGEDGKHSFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPI-----R-PKVEPAV 331 (345)
Q Consensus 258 il~~~~~~Lg~~l~~lv~~ld~~~~~~~~p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~i~-----~-~~~a~~~ 331 (345)
+-..+-.+|+.+++.++-.+.- ...=.+|+++||++.+. + |.+.+.+.+++.. .++. + .+..-.+
T Consensus 669 iA~~fh~~la~~~~e~~~~~a~----~~gi~~V~lsGGVf~N~--~-l~~~~~~~l~~~~--f~~~~~~~~P~~DggIsl 739 (750)
T COG0068 669 IATKFHNALAEGFAELAVELAK----KYGINKVVLSGGVFQNR--L-LLERLAKYLKKEG--FRFLFHQEVPAGDGGISL 739 (750)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----hcCccEEEeeCCeeecH--H-HHHHHHHHHHhcC--ceEeeecccCCCCCceeH
Confidence 3344445555555444444431 01125799999999763 3 4788888888751 2222 2 2344567
Q ss_pred HHHHHH
Q 019144 332 GAALLA 337 (345)
Q Consensus 332 GAa~la 337 (345)
|=+..+
T Consensus 740 GQ~v~~ 745 (750)
T COG0068 740 GQAVAA 745 (750)
T ss_pred HHHHHH
Confidence 777665
No 220
>COG2428 Uncharacterized conserved protein [Function unknown]
Probab=22.17 E-value=1.2e+02 Score=26.60 Aligned_cols=49 Identities=22% Similarity=0.207 Sum_probs=30.0
Q ss_pred CccEEEEcCcccCcccccchHHHHHHHHhhCCCceeeC--CCCChHHHHHHHHH
Q 019144 287 SFPLVMVGGVLEANRRWDIGREVVKCILRDYPGAVPIR--PKVEPAVGAALLAW 338 (345)
Q Consensus 287 p~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~~~i~~--~~~a~~~GAa~la~ 338 (345)
+..+|+.||++...++ +...++.+...++.+.+.. +..-..-||...|.
T Consensus 84 ~~~~ivvGGIlGD~pp---rgRT~~l~T~~~~~~~~R~lG~~q~SiDgA~rta~ 134 (196)
T COG2428 84 EDTYIVVGGILGDHPP---RGRTKELITSKMEGVKVRHLGPKQFSIDGASRTAK 134 (196)
T ss_pred cccEEEECccccCCCC---CCcchhhhccccccccccccCccceeccHHHHHHH
Confidence 5568999999987776 5566666665555555543 33334455554443
No 221
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=21.34 E-value=14 Score=34.04 Aligned_cols=33 Identities=18% Similarity=0.110 Sum_probs=22.9
Q ss_pred eecCCCCeEEeccCCCCcC--C---------cCcHHHHHHHHHH
Q 019144 161 GFTEDGRDARAAGAGPILG--D---------WGSGYGIAAQALT 193 (345)
Q Consensus 161 gi~~dG~~~~~Gg~G~~~g--d---------~G~a~~iG~~~~~ 193 (345)
|-+..|.-..+|++||+.. + .+..|.||+..|-
T Consensus 142 G~l~~G~~g~AGEiGh~~v~~~~~~~~~~~~~~~~c~cG~~Gcl 185 (256)
T PRK13311 142 GSIVSGRNHITGEFGHFRLPVDALDILGADIPRVPCGCGHRGCI 185 (256)
T ss_pred CEEecCCCCCCccceeEEeccCcccccccCCCCCcCCCCCccch
Confidence 4445677778999999864 3 2557888877653
No 222
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=20.64 E-value=2.3e+02 Score=27.41 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=33.3
Q ss_pred ccEEEEcCcccCcccccchHHHHHHHHhhCC---CceeeC----CCCChHHHHHHHHH
Q 019144 288 FPLVMVGGVLEANRRWDIGREVVKCILRDYP---GAVPIR----PKVEPAVGAALLAW 338 (345)
Q Consensus 288 ~~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~---~~~i~~----~~~a~~~GAa~la~ 338 (345)
..|||.||.... +-| .+.++++|.+..| .+++.. ...++.+||+.++-
T Consensus 312 ~nIvl~GG~S~i-~G~--~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilas 366 (393)
T PF00022_consen 312 SNIVLTGGSSLI-PGF--KERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILAS 366 (393)
T ss_dssp TTEEEESGGGGS-TTH--HHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHT
T ss_pred cceEEecccccc-cch--HHHHHHHhhhhhhccccceeccCchhhhhcccccceeeec
Confidence 368999997655 344 8889999988643 355553 24568899998874
No 223
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=20.45 E-value=3.1e+02 Score=25.51 Aligned_cols=46 Identities=13% Similarity=0.116 Sum_probs=33.6
Q ss_pred cEEEEEecCccceeeEEEcCccCCCCCCCCCCeeEEEecCCCCccccCHHHHHHHHHHH
Q 019144 22 EVILGLDGGTTSTVCICMPVISMSDSLPDPLPVLARAAAGCSNHNSVGEDAARETIEKV 80 (345)
Q Consensus 22 ~~~lgvDiG~t~~~~~l~d~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~~ 80 (345)
.-++.||+|-++|.++++. +++|.+--+--+.. .+++.+.+.|.+.
T Consensus 167 ~~~~~vniGN~HTlaa~v~----------~~rI~GvfEHHT~~---l~~~kL~~~l~~l 212 (254)
T PF08735_consen 167 EGIIVVNIGNGHTLAALVK----------DGRIYGVFEHHTGM---LTPEKLEEYLERL 212 (254)
T ss_pred CCeEEEEeCCccEEEEEEe----------CCEEEEEEecccCC---CCHHHHHHHHHHH
Confidence 4689999999999999995 58888876543332 4677666665554
No 224
>PTZ00452 actin; Provisional
Probab=20.06 E-value=1.1e+02 Score=30.05 Aligned_cols=46 Identities=13% Similarity=0.216 Sum_probs=32.4
Q ss_pred cEEEEcCcccCcccccchHHHHHHHHhhCCC---ceeeCC---CCChHHHHHHHH
Q 019144 289 PLVMVGGVLEANRRWDIGREVVKCILRDYPG---AVPIRP---KVEPAVGAALLA 337 (345)
Q Consensus 289 ~IVlgGgl~~~~~~~~l~~~~~~~l~~~~~~---~~i~~~---~~a~~~GAa~la 337 (345)
.|||.||.... +-| .+.++.+|.+..|. +++... ..++.+|++.++
T Consensus 296 nIvL~GG~Sl~-~Gf--~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSila 347 (375)
T PTZ00452 296 NIVLSGGTTLF-PGI--ANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQC 347 (375)
T ss_pred cEEEecccccc-cCH--HHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhc
Confidence 69999996654 344 88899999888653 444432 456778888775
Done!