Query 019145
Match_columns 345
No_of_seqs 294 out of 3128
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 07:04:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019145.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019145hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0989 Replication factor C, 100.0 1.3E-47 2.9E-52 318.1 28.1 280 47-328 22-302 (346)
2 PRK14956 DNA polymerase III su 100.0 7E-44 1.5E-48 321.6 32.2 276 46-331 3-298 (484)
3 PLN03025 replication factor C 100.0 3.3E-43 7.1E-48 312.2 31.8 271 49-328 1-271 (319)
4 KOG0991 Replication factor C, 100.0 6.6E-44 1.4E-48 284.6 24.2 279 47-334 13-291 (333)
5 PRK14958 DNA polymerase III su 100.0 3E-43 6.6E-48 326.3 31.9 274 47-330 2-294 (509)
6 PRK06645 DNA polymerase III su 100.0 5.5E-42 1.2E-46 315.6 33.7 275 46-330 6-306 (507)
7 PRK07003 DNA polymerase III su 100.0 4E-42 8.7E-47 320.7 33.0 275 47-331 2-295 (830)
8 PRK14964 DNA polymerase III su 100.0 4.5E-42 9.8E-47 313.5 32.4 270 50-330 2-290 (491)
9 PRK14952 DNA polymerase III su 100.0 1.1E-41 2.3E-46 318.2 34.0 273 50-332 2-296 (584)
10 PRK14951 DNA polymerase III su 100.0 1.6E-41 3.4E-46 318.0 32.7 274 47-330 2-299 (618)
11 PRK14961 DNA polymerase III su 100.0 5.8E-41 1.3E-45 302.1 33.7 275 47-331 2-295 (363)
12 PRK14960 DNA polymerase III su 100.0 3E-41 6.6E-46 311.9 32.2 273 48-330 2-293 (702)
13 PRK14962 DNA polymerase III su 100.0 5.9E-41 1.3E-45 308.0 33.7 270 50-329 3-291 (472)
14 PRK14965 DNA polymerase III su 100.0 3.5E-41 7.6E-46 318.2 32.4 276 47-332 2-296 (576)
15 PRK05896 DNA polymerase III su 100.0 6.1E-41 1.3E-45 310.1 32.7 274 47-330 2-294 (605)
16 PRK14949 DNA polymerase III su 100.0 7.7E-41 1.7E-45 317.8 33.4 275 47-331 2-295 (944)
17 PRK08691 DNA polymerase III su 100.0 6.1E-41 1.3E-45 312.8 32.0 275 47-331 2-295 (709)
18 PRK05563 DNA polymerase III su 100.0 1.3E-40 2.8E-45 312.9 34.0 275 47-331 2-295 (559)
19 PRK06305 DNA polymerase III su 100.0 2.2E-40 4.8E-45 304.0 34.6 275 47-331 3-297 (451)
20 PRK14953 DNA polymerase III su 100.0 1.7E-40 3.7E-45 306.4 33.6 276 47-332 2-296 (486)
21 PRK12323 DNA polymerase III su 100.0 7.4E-41 1.6E-45 308.6 30.9 274 47-330 2-299 (700)
22 PRK09111 DNA polymerase III su 100.0 1.5E-40 3.3E-45 312.2 33.4 275 46-330 9-307 (598)
23 PRK14954 DNA polymerase III su 100.0 2.2E-40 4.7E-45 311.4 33.3 274 47-330 2-307 (620)
24 PRK14963 DNA polymerase III su 100.0 3E-40 6.5E-45 305.6 33.4 270 51-331 4-291 (504)
25 PRK07764 DNA polymerase III su 100.0 2.7E-40 5.8E-45 319.8 33.2 271 50-330 4-296 (824)
26 PRK14971 DNA polymerase III su 100.0 3.8E-40 8.3E-45 311.7 33.4 274 47-330 3-296 (614)
27 PRK06647 DNA polymerase III su 100.0 5.8E-40 1.3E-44 307.1 33.2 274 47-330 2-294 (563)
28 PRK14955 DNA polymerase III su 100.0 4.5E-40 9.7E-45 299.5 31.7 273 48-330 3-307 (397)
29 PRK07133 DNA polymerase III su 100.0 5.7E-40 1.2E-44 309.3 33.2 275 46-330 3-293 (725)
30 PRK07994 DNA polymerase III su 100.0 7.4E-40 1.6E-44 307.2 33.2 274 47-330 2-294 (647)
31 PRK08451 DNA polymerase III su 100.0 9E-40 2E-44 300.9 33.0 272 49-332 2-292 (535)
32 PRK14957 DNA polymerase III su 100.0 1.3E-39 2.7E-44 301.6 33.6 273 47-329 2-293 (546)
33 PRK14959 DNA polymerase III su 100.0 1.3E-39 2.7E-44 302.9 32.5 275 47-331 2-295 (624)
34 COG2812 DnaX DNA polymerase II 100.0 2.5E-40 5.4E-45 300.7 25.6 273 47-329 2-293 (515)
35 TIGR02397 dnaX_nterm DNA polym 100.0 4E-39 8.7E-44 292.0 33.1 274 48-331 1-293 (355)
36 PRK14969 DNA polymerase III su 100.0 2.6E-39 5.7E-44 302.1 32.0 276 47-332 2-296 (527)
37 PRK14970 DNA polymerase III su 100.0 7.4E-39 1.6E-43 290.5 33.6 276 47-332 3-285 (367)
38 COG2256 MGS1 ATPase related to 100.0 2.1E-39 4.5E-44 279.2 27.1 261 49-328 12-296 (436)
39 PRK14950 DNA polymerase III su 100.0 3.6E-38 7.8E-43 299.3 33.2 275 47-331 2-296 (585)
40 PRK14948 DNA polymerase III su 100.0 2.7E-37 5.9E-42 292.3 33.9 275 47-332 2-297 (620)
41 PRK00440 rfc replication facto 100.0 1.9E-36 4.1E-41 270.8 34.1 268 47-324 3-271 (319)
42 PRK12402 replication factor C 100.0 4.1E-35 8.9E-40 264.1 33.6 266 49-325 3-296 (337)
43 PRK13342 recombination factor 100.0 3.8E-33 8.3E-38 255.8 30.4 259 50-328 1-277 (413)
44 KOG2028 ATPase related to the 100.0 8.6E-34 1.9E-38 240.7 22.7 268 46-328 123-426 (554)
45 PRK13341 recombination factor 100.0 4.4E-33 9.5E-38 266.8 28.8 263 47-327 14-304 (725)
46 PRK04195 replication factor C 100.0 7.7E-32 1.7E-36 251.8 27.6 259 49-327 2-270 (482)
47 PHA02544 44 clamp loader, smal 100.0 3.5E-30 7.6E-35 229.6 31.9 258 46-328 6-272 (316)
48 KOG2035 Replication factor C, 100.0 2.6E-30 5.6E-35 211.9 24.5 265 50-327 2-301 (351)
49 KOG0990 Replication factor C, 100.0 1.1E-30 2.3E-35 218.7 19.9 284 45-332 25-313 (360)
50 PF05496 RuvB_N: Holliday junc 100.0 6.3E-30 1.4E-34 207.2 17.8 197 46-264 9-229 (233)
51 PRK04132 replication factor C 100.0 2.6E-28 5.5E-33 235.0 29.2 234 85-328 567-803 (846)
52 PRK05564 DNA polymerase III su 100.0 1.1E-26 2.4E-31 206.0 27.7 242 59-330 2-248 (313)
53 PRK00080 ruvB Holliday junctio 99.9 1.9E-25 4.1E-30 199.4 24.9 210 47-278 11-248 (328)
54 PRK09112 DNA polymerase III su 99.9 1.6E-24 3.5E-29 192.6 26.1 195 53-259 15-243 (351)
55 COG2255 RuvB Holliday junction 99.9 1.6E-24 3.4E-29 179.1 19.7 205 52-278 17-249 (332)
56 TIGR02902 spore_lonB ATP-depen 99.9 1.2E-24 2.6E-29 204.4 21.6 246 34-281 39-333 (531)
57 TIGR00635 ruvB Holliday juncti 99.9 4.6E-24 1E-28 189.3 23.8 200 58-279 1-228 (305)
58 PRK07940 DNA polymerase III su 99.9 3.3E-23 7.2E-28 186.6 28.7 184 59-257 3-214 (394)
59 KOG1969 DNA replication checkp 99.9 5E-24 1.1E-28 195.8 23.5 215 50-276 260-533 (877)
60 PRK07399 DNA polymerase III su 99.9 7E-23 1.5E-27 179.8 29.1 249 59-326 2-291 (314)
61 PRK07471 DNA polymerase III su 99.9 2.4E-23 5.3E-28 186.1 24.9 191 54-258 12-240 (365)
62 PRK08058 DNA polymerase III su 99.9 1.6E-22 3.4E-27 179.8 23.7 183 59-258 3-206 (329)
63 TIGR00678 holB DNA polymerase 99.9 7.1E-23 1.5E-27 168.5 17.3 166 71-253 2-188 (188)
64 COG0470 HolB ATPase involved i 99.9 5.4E-22 1.2E-26 177.9 22.0 185 62-263 2-206 (325)
65 PRK08084 DNA replication initi 99.9 4.4E-22 9.5E-27 168.9 19.5 199 59-278 20-234 (235)
66 PRK05629 hypothetical protein; 99.9 2.6E-21 5.7E-26 171.9 24.6 232 83-329 7-241 (318)
67 PRK07993 DNA polymerase III su 99.9 6.7E-21 1.5E-25 168.6 25.0 178 66-258 7-206 (334)
68 PRK06893 DNA replication initi 99.9 1E-21 2.2E-26 166.1 18.5 203 55-278 10-228 (229)
69 PRK07452 DNA polymerase III su 99.9 6.4E-21 1.4E-25 170.6 24.3 235 83-331 2-249 (326)
70 PRK07914 hypothetical protein; 99.9 7E-21 1.5E-25 169.3 24.2 234 83-331 6-245 (320)
71 PRK05707 DNA polymerase III su 99.9 7.1E-21 1.5E-25 168.0 23.5 171 74-258 13-205 (328)
72 PF03215 Rad17: Rad17 cell cyc 99.9 2.3E-21 4.9E-26 179.8 20.2 211 46-262 4-269 (519)
73 PRK06871 DNA polymerase III su 99.9 4.1E-20 8.8E-25 161.9 26.6 178 66-258 7-205 (325)
74 PRK05907 hypothetical protein; 99.9 6.3E-20 1.4E-24 160.5 27.2 232 70-325 7-249 (311)
75 PRK08727 hypothetical protein; 99.9 1E-20 2.2E-25 160.3 20.8 200 59-279 17-230 (233)
76 PTZ00112 origin recognition co 99.9 1.7E-20 3.7E-25 177.3 23.5 274 50-330 747-1055(1164)
77 KOG1970 Checkpoint RAD17-RFC c 99.9 2.5E-20 5.4E-25 166.9 23.2 210 46-261 67-320 (634)
78 TIGR00602 rad24 checkpoint pro 99.9 3.5E-21 7.5E-26 181.7 18.4 205 46-262 69-329 (637)
79 PRK08769 DNA polymerase III su 99.9 8.9E-20 1.9E-24 159.5 25.5 178 65-258 8-210 (319)
80 PRK06585 holA DNA polymerase I 99.9 1.2E-19 2.6E-24 163.5 27.1 235 81-330 19-260 (343)
81 COG1222 RPT1 ATP-dependent 26S 99.9 7.5E-21 1.6E-25 162.3 17.8 201 57-278 147-390 (406)
82 COG1223 Predicted ATPase (AAA+ 99.9 1.2E-20 2.6E-25 154.1 17.3 205 53-278 113-353 (368)
83 PRK08903 DnaA regulatory inact 99.9 4.3E-20 9.3E-25 156.7 21.3 200 55-279 12-225 (227)
84 TIGR02881 spore_V_K stage V sp 99.9 2.8E-20 6.1E-25 160.8 19.8 191 60-263 5-237 (261)
85 TIGR02928 orc1/cdc6 family rep 99.9 5.3E-19 1.1E-23 161.0 29.2 273 49-330 6-322 (365)
86 PRK06090 DNA polymerase III su 99.9 8.4E-20 1.8E-24 159.5 22.1 175 66-258 8-203 (319)
87 PF13177 DNA_pol3_delta2: DNA 99.9 1.3E-20 2.8E-25 150.3 15.7 141 65-215 1-162 (162)
88 TIGR02903 spore_lon_C ATP-depe 99.9 1.3E-19 2.9E-24 172.9 24.4 232 49-281 142-431 (615)
89 TIGR03420 DnaA_homol_Hda DnaA 99.9 4.3E-20 9.4E-25 156.8 18.5 201 56-277 10-225 (226)
90 PRK08487 DNA polymerase III su 99.9 6.5E-19 1.4E-23 157.1 26.2 237 72-329 5-247 (328)
91 PRK06620 hypothetical protein; 99.8 2.6E-19 5.6E-24 149.2 20.3 190 50-277 8-213 (214)
92 PRK06964 DNA polymerase III su 99.8 7.7E-19 1.7E-23 154.9 24.1 172 66-257 6-226 (342)
93 PRK05642 DNA replication initi 99.8 4.8E-19 1E-23 150.1 20.3 200 58-278 16-233 (234)
94 TIGR01128 holA DNA polymerase 99.8 1.4E-18 3E-23 154.2 24.1 218 99-330 4-228 (302)
95 PRK05574 holA DNA polymerase I 99.8 4.9E-18 1.1E-22 153.2 26.8 245 72-331 7-264 (340)
96 CHL00181 cbbX CbbX; Provisiona 99.8 9.4E-19 2E-23 152.1 20.5 190 61-263 23-253 (287)
97 PRK09087 hypothetical protein; 99.8 4.8E-19 1E-23 148.8 17.0 189 59-279 19-221 (226)
98 PRK00411 cdc6 cell division co 99.8 7.5E-18 1.6E-22 155.0 26.2 230 47-280 19-282 (394)
99 CHL00195 ycf46 Ycf46; Provisio 99.8 2.3E-18 5E-23 159.0 20.2 206 57-282 224-465 (489)
100 PRK07132 DNA polymerase III su 99.8 3.3E-17 7.2E-22 142.3 25.8 175 68-258 3-186 (299)
101 PRK05917 DNA polymerase III su 99.8 4.1E-18 8.8E-23 146.0 19.2 160 67-251 3-176 (290)
102 TIGR02639 ClpA ATP-dependent C 99.8 2.3E-18 4.9E-23 168.7 19.9 218 48-277 169-426 (731)
103 COG1474 CDC6 Cdc6-related prot 99.8 1.7E-17 3.6E-22 148.4 23.4 231 53-288 12-273 (366)
104 TIGR02880 cbbX_cfxQ probable R 99.8 4.7E-18 1E-22 147.9 18.8 186 62-264 23-253 (284)
105 PRK14087 dnaA chromosomal repl 99.8 3.6E-17 7.8E-22 150.8 24.6 212 56-279 110-347 (450)
106 TIGR01241 FtsH_fam ATP-depende 99.8 8.2E-18 1.8E-22 158.2 20.7 204 54-278 48-293 (495)
107 PRK14086 dnaA chromosomal repl 99.8 2.1E-17 4.4E-22 154.3 22.9 208 58-278 285-513 (617)
108 PRK08699 DNA polymerase III su 99.8 8.4E-17 1.8E-21 142.0 25.1 148 66-225 6-183 (325)
109 PRK12422 chromosomal replicati 99.8 9E-18 1.9E-22 154.3 18.7 207 58-278 108-341 (445)
110 KOG0730 AAA+-type ATPase [Post 99.8 1.6E-17 3.4E-22 152.3 19.9 188 55-264 428-652 (693)
111 PRK14088 dnaA chromosomal repl 99.8 1.4E-17 3E-22 153.4 19.4 207 58-278 102-330 (440)
112 PRK03992 proteasome-activating 99.8 2.7E-17 5.9E-22 149.6 20.3 202 57-279 127-371 (389)
113 PF00308 Bac_DnaA: Bacterial d 99.8 2.8E-17 6E-22 137.7 17.8 192 58-264 5-216 (219)
114 TIGR00362 DnaA chromosomal rep 99.8 2.5E-17 5.3E-22 151.5 19.1 207 59-279 108-336 (405)
115 PTZ00361 26 proteosome regulat 99.8 2.8E-17 6.1E-22 149.6 18.9 207 51-279 173-423 (438)
116 KOG0733 Nuclear AAA ATPase (VC 99.8 2.3E-17 4.9E-22 149.6 17.7 182 59-261 188-407 (802)
117 CHL00176 ftsH cell division pr 99.8 5.6E-17 1.2E-21 154.5 21.4 201 57-278 179-421 (638)
118 PRK00149 dnaA chromosomal repl 99.8 1.6E-17 3.5E-22 154.5 17.4 206 59-279 120-348 (450)
119 PRK07276 DNA polymerase III su 99.8 7.3E-17 1.6E-21 138.9 19.7 173 65-257 6-198 (290)
120 PTZ00454 26S protease regulato 99.8 8.8E-17 1.9E-21 145.5 20.9 202 56-278 140-384 (398)
121 TIGR03345 VI_ClpV1 type VI sec 99.8 7E-17 1.5E-21 159.3 21.8 204 49-263 175-409 (852)
122 COG1466 HolA DNA polymerase II 99.8 5.5E-16 1.2E-20 138.5 25.1 242 73-329 6-256 (334)
123 COG1224 TIP49 DNA helicase TIP 99.7 3E-16 6.4E-21 134.0 20.4 122 156-278 292-430 (450)
124 PRK05818 DNA polymerase III su 99.7 5E-16 1.1E-20 130.2 20.5 188 85-290 10-224 (261)
125 KOG0733 Nuclear AAA ATPase (VC 99.7 8E-17 1.7E-21 146.1 16.5 181 58-258 508-730 (802)
126 COG0593 DnaA ATPase involved i 99.7 1.3E-16 2.8E-21 142.1 17.7 206 59-279 85-312 (408)
127 PRK14700 recombination factor 99.7 2.4E-16 5.2E-21 133.6 16.8 144 185-328 8-173 (300)
128 KOG0738 AAA+-type ATPase [Post 99.7 4.1E-16 8.9E-21 134.5 16.7 180 58-259 209-426 (491)
129 KOG0734 AAA+-type ATPase conta 99.7 3.4E-16 7.3E-21 140.0 16.6 200 54-275 297-536 (752)
130 PRK06526 transposase; Provisio 99.7 5.5E-18 1.2E-22 144.5 5.0 202 1-217 17-237 (254)
131 TIGR00763 lon ATP-dependent pr 99.7 3.8E-17 8.3E-22 160.9 11.4 201 62-280 321-586 (775)
132 COG0466 Lon ATP-dependent Lon 99.7 1.7E-16 3.6E-21 147.1 14.4 247 28-281 282-585 (782)
133 TIGR01242 26Sp45 26S proteasom 99.7 1.3E-15 2.7E-20 138.2 19.9 206 56-278 117-361 (364)
134 PF06068 TIP49: TIP49 C-termin 99.7 5E-16 1.1E-20 134.7 16.3 105 156-261 279-396 (398)
135 PRK10787 DNA-binding ATP-depen 99.7 4.3E-16 9.3E-21 152.1 16.6 242 32-282 285-584 (784)
136 KOG0731 AAA+-type ATPase conta 99.7 2.3E-15 4.9E-20 142.2 19.2 205 54-278 304-551 (774)
137 TIGR03689 pup_AAA proteasome A 99.7 1.4E-15 3.1E-20 140.4 17.1 174 53-237 174-387 (512)
138 TIGR01243 CDC48 AAA family ATP 99.7 2.2E-15 4.7E-20 148.3 18.1 174 57-252 449-659 (733)
139 TIGR02640 gas_vesic_GvpN gas v 99.7 1.9E-14 4.2E-19 124.2 21.6 198 67-277 8-254 (262)
140 TIGR03346 chaperone_ClpB ATP-d 99.7 7.2E-15 1.6E-19 146.2 20.4 205 49-264 161-396 (852)
141 COG2204 AtoC Response regulato 99.7 2.1E-14 4.6E-19 130.0 21.4 213 58-274 138-385 (464)
142 TIGR03015 pepcterm_ATPase puta 99.7 3.4E-14 7.4E-19 123.9 22.2 227 48-279 10-265 (269)
143 KOG2004 Mitochondrial ATP-depe 99.7 5.1E-16 1.1E-20 143.3 10.9 223 31-261 373-642 (906)
144 PRK13407 bchI magnesium chelat 99.7 1.1E-14 2.3E-19 128.5 18.9 222 56-277 3-303 (334)
145 PRK11034 clpA ATP-dependent Cl 99.7 1.2E-14 2.6E-19 141.0 21.0 216 50-277 175-430 (758)
146 KOG0727 26S proteasome regulat 99.7 5.5E-15 1.2E-19 120.8 15.5 155 59-233 153-345 (408)
147 TIGR03345 VI_ClpV1 type VI sec 99.7 1.2E-15 2.7E-20 150.5 13.9 194 61-261 566-827 (852)
148 TIGR01817 nifA Nif-specific re 99.7 8.1E-15 1.7E-19 139.5 18.9 217 54-274 189-439 (534)
149 PLN00020 ribulose bisphosphate 99.7 2.6E-15 5.7E-20 130.6 13.9 148 84-249 150-331 (413)
150 PRK08181 transposase; Validate 99.6 8.5E-17 1.8E-21 137.8 4.3 198 1-215 24-243 (269)
151 COG0542 clpA ATP-binding subun 99.6 5.6E-15 1.2E-19 140.6 16.2 191 61-258 491-748 (786)
152 PRK11034 clpA ATP-dependent Cl 99.6 7E-15 1.5E-19 142.6 17.2 175 62-246 459-694 (758)
153 KOG0728 26S proteasome regulat 99.6 1.1E-14 2.4E-19 118.9 15.6 207 49-276 135-384 (404)
154 PRK10865 protein disaggregatio 99.6 1.2E-14 2.7E-19 143.9 18.8 200 49-263 166-400 (857)
155 KOG0736 Peroxisome assembly fa 99.6 7.6E-15 1.7E-19 136.6 16.1 184 51-255 662-889 (953)
156 PRK10733 hflB ATP-dependent me 99.6 1.5E-14 3.2E-19 139.5 18.4 204 53-277 144-389 (644)
157 PRK11608 pspF phage shock prot 99.6 1.6E-13 3.5E-18 122.1 23.3 210 59-272 4-249 (326)
158 TIGR02329 propionate_PrpR prop 99.6 1.3E-13 2.7E-18 129.2 23.6 216 57-276 208-466 (526)
159 KOG0743 AAA+-type ATPase [Post 99.6 1.8E-14 3.9E-19 127.6 16.6 198 55-294 195-433 (457)
160 PRK15424 propionate catabolism 99.6 1.4E-13 3E-18 128.8 23.5 216 58-274 216-479 (538)
161 TIGR02974 phageshock_pspF psp 99.6 2.8E-14 6.1E-19 126.8 17.9 206 63-272 1-242 (329)
162 KOG1514 Origin recognition com 99.6 6.5E-14 1.4E-18 129.5 20.6 265 65-331 400-705 (767)
163 COG0464 SpoVK ATPases of the A 99.6 3.4E-14 7.4E-19 134.2 19.4 203 57-279 238-482 (494)
164 KOG0737 AAA+-type ATPase [Post 99.6 1.1E-14 2.4E-19 125.4 14.3 191 56-263 87-309 (386)
165 PF05673 DUF815: Protein of un 99.6 6.2E-14 1.3E-18 115.9 18.1 191 52-261 18-246 (249)
166 KOG1942 DNA helicase, TBP-inte 99.6 2.7E-14 5.8E-19 119.1 15.8 121 156-277 297-435 (456)
167 CHL00206 ycf2 Ycf2; Provisiona 99.6 2.7E-14 5.8E-19 144.9 18.4 177 82-278 1630-1875(2281)
168 CHL00095 clpC Clp protease ATP 99.6 2.5E-14 5.5E-19 141.9 18.0 203 50-264 168-401 (821)
169 CHL00081 chlI Mg-protoporyphyr 99.6 7.9E-14 1.7E-18 123.2 19.1 221 57-278 13-320 (350)
170 TIGR02639 ClpA ATP-dependent C 99.6 3.1E-14 6.7E-19 139.7 18.3 192 61-259 454-706 (731)
171 PRK11388 DNA-binding transcrip 99.6 1.7E-13 3.6E-18 133.4 22.3 214 57-276 321-567 (638)
172 PF00004 AAA: ATPase family as 99.6 1E-14 2.2E-19 112.8 11.3 109 85-212 1-131 (132)
173 KOG0652 26S proteasome regulat 99.6 2.2E-14 4.8E-19 117.8 13.5 168 59-247 169-374 (424)
174 PRK10820 DNA-binding transcrip 99.6 2E-13 4.4E-18 128.8 22.1 214 56-273 199-447 (520)
175 KOG0739 AAA+-type ATPase [Post 99.6 3.8E-15 8.2E-20 124.4 8.3 225 59-299 131-386 (439)
176 TIGR03346 chaperone_ClpB ATP-d 99.6 1E-13 2.2E-18 138.1 19.7 194 61-261 565-822 (852)
177 COG1221 PspF Transcriptional r 99.6 6.5E-14 1.4E-18 124.6 16.2 207 56-264 73-309 (403)
178 PRK05022 anaerobic nitric oxid 99.6 5.3E-13 1.2E-17 126.0 23.4 203 59-265 185-421 (509)
179 CHL00095 clpC Clp protease ATP 99.6 8.7E-14 1.9E-18 138.1 18.9 179 61-246 509-760 (821)
180 PRK10865 protein disaggregatio 99.6 1.8E-13 4E-18 135.7 20.7 195 59-260 566-824 (857)
181 TIGR02030 BchI-ChlI magnesium 99.6 3.3E-13 7.1E-18 119.4 19.9 220 59-278 2-307 (337)
182 COG3829 RocR Transcriptional r 99.6 1.2E-13 2.5E-18 125.2 17.3 217 54-274 238-491 (560)
183 KOG0726 26S proteasome regulat 99.6 2E-14 4.4E-19 119.7 11.0 202 53-276 177-422 (440)
184 TIGR01243 CDC48 AAA family ATP 99.6 1.4E-13 3E-18 135.6 18.8 180 56-257 173-388 (733)
185 PRK05342 clpX ATP-dependent pr 99.6 7.2E-14 1.6E-18 126.9 14.9 173 62-246 72-357 (412)
186 KOG1968 Replication factor C, 99.6 2.2E-14 4.8E-19 139.4 11.5 207 48-262 307-537 (871)
187 PRK09183 transposase/IS protei 99.5 1.9E-15 4.1E-20 129.8 3.3 181 1-195 21-206 (259)
188 KOG0740 AAA+-type ATPase [Post 99.5 1.7E-13 3.6E-18 122.4 14.7 176 53-248 145-354 (428)
189 PRK15429 formate hydrogenlyase 99.5 1.1E-12 2.4E-17 128.4 21.6 217 50-270 363-616 (686)
190 KOG0729 26S proteasome regulat 99.5 1E-13 2.3E-18 114.2 11.9 178 58-257 174-394 (435)
191 KOG2680 DNA helicase TIP49, TB 99.5 2.1E-12 4.5E-17 108.3 19.7 122 156-278 289-427 (454)
192 PRK13531 regulatory ATPase Rav 99.5 3.1E-12 6.7E-17 116.4 22.5 204 62-274 21-278 (498)
193 COG0465 HflB ATP-dependent Zn 99.5 2.4E-13 5.1E-18 126.4 15.5 199 57-277 146-387 (596)
194 PRK06581 DNA polymerase III su 99.5 2.1E-12 4.5E-17 106.1 19.0 179 70-261 2-192 (263)
195 COG3604 FhlA Transcriptional r 99.5 9.1E-13 2E-17 117.9 17.9 210 59-272 221-464 (550)
196 KOG0735 AAA+-type ATPase [Post 99.5 7.4E-13 1.6E-17 122.6 17.5 174 58-252 664-872 (952)
197 KOG0742 AAA+-type ATPase [Post 99.5 6.9E-13 1.5E-17 115.6 14.1 156 59-230 353-531 (630)
198 TIGR02915 PEP_resp_reg putativ 99.5 8.4E-12 1.8E-16 116.8 22.1 211 59-273 137-382 (445)
199 TIGR00382 clpX endopeptidase C 99.5 2.2E-12 4.7E-17 116.6 17.2 173 62-246 78-363 (413)
200 cd00009 AAA The AAA+ (ATPases 99.5 1.6E-12 3.4E-17 102.3 14.6 137 65-212 2-150 (151)
201 TIGR02442 Cob-chelat-sub cobal 99.5 4.3E-12 9.4E-17 122.4 20.4 216 59-277 2-301 (633)
202 KOG2227 Pre-initiation complex 99.5 1.8E-12 3.9E-17 115.0 14.7 203 61-264 150-379 (529)
203 PRK10923 glnG nitrogen regulat 99.5 2E-11 4.4E-16 114.9 22.9 212 59-274 136-382 (469)
204 COG2607 Predicted ATPase (AAA+ 99.5 1.1E-11 2.3E-16 101.0 17.6 194 51-263 50-280 (287)
205 KOG0730 AAA+-type ATPase [Post 99.5 4.8E-12 1E-16 116.7 17.5 201 61-282 184-418 (693)
206 PF01637 Arch_ATPase: Archaeal 99.4 1.4E-12 3.1E-17 111.0 12.9 188 63-254 1-232 (234)
207 TIGR01650 PD_CobS cobaltochela 99.4 3.4E-11 7.3E-16 105.0 20.3 180 54-244 38-250 (327)
208 PF01078 Mg_chelatase: Magnesi 99.4 4.5E-13 9.7E-18 108.7 6.7 117 59-182 1-133 (206)
209 PRK11361 acetoacetate metaboli 99.4 4.5E-11 9.7E-16 112.3 21.3 212 60-275 142-388 (457)
210 PRK15115 response regulator Gl 99.4 9.1E-11 2E-15 109.8 22.5 212 62-277 135-381 (444)
211 TIGR00368 Mg chelatase-related 99.4 3.5E-11 7.5E-16 112.1 18.7 157 57-217 188-394 (499)
212 TIGR00390 hslU ATP-dependent p 99.4 1.5E-11 3.2E-16 109.8 15.4 108 154-261 246-401 (441)
213 TIGR01818 ntrC nitrogen regula 99.4 1.5E-10 3.2E-15 109.0 22.9 211 61-275 134-379 (463)
214 PF07728 AAA_5: AAA domain (dy 99.4 5.2E-13 1.1E-17 104.2 5.1 116 84-206 1-139 (139)
215 TIGR00764 lon_rel lon-related 99.4 6.1E-11 1.3E-15 113.4 19.8 126 154-279 216-390 (608)
216 KOG0651 26S proteasome regulat 99.4 6.8E-12 1.5E-16 105.8 11.1 174 54-248 125-339 (388)
217 PHA02244 ATPase-like protein 99.4 2.5E-11 5.3E-16 106.9 15.0 129 71-216 110-263 (383)
218 PRK08485 DNA polymerase III su 99.4 1.7E-11 3.8E-16 97.9 12.4 133 117-263 29-174 (206)
219 KOG0744 AAA+-type ATPase [Post 99.3 1.4E-11 3E-16 104.5 12.0 135 85-228 180-341 (423)
220 COG0714 MoxR-like ATPases [Gen 99.3 4.3E-11 9.3E-16 107.1 16.1 152 62-221 25-196 (329)
221 PF05621 TniB: Bacterial TniB 99.3 1.1E-10 2.4E-15 99.9 17.7 214 63-276 36-285 (302)
222 KOG0732 AAA+-type ATPase conta 99.3 4.4E-11 9.5E-16 116.7 16.8 193 56-263 260-487 (1080)
223 PRK05201 hslU ATP-dependent pr 99.3 6.7E-11 1.5E-15 105.8 16.4 107 155-261 249-403 (443)
224 PF01695 IstB_IS21: IstB-like 99.3 4.4E-13 9.4E-18 108.5 2.1 138 36-195 3-150 (178)
225 TIGR02031 BchD-ChlD magnesium 99.3 1.3E-10 2.8E-15 111.1 18.8 193 79-277 13-255 (589)
226 COG0542 clpA ATP-binding subun 99.3 1.3E-10 2.8E-15 111.3 17.6 198 51-264 160-393 (786)
227 smart00350 MCM minichromosome 99.3 1E-10 2.2E-15 110.4 16.8 166 53-227 195-400 (509)
228 PRK13765 ATP-dependent proteas 99.3 3.2E-10 7E-15 108.2 20.2 125 153-277 224-397 (637)
229 PF00158 Sigma54_activat: Sigm 99.3 7.9E-12 1.7E-16 100.0 7.8 129 63-195 1-144 (168)
230 COG3283 TyrR Transcriptional r 99.3 1.7E-09 3.7E-14 93.2 21.9 210 57-273 200-442 (511)
231 KOG0735 AAA+-type ATPase [Post 99.3 8.9E-10 1.9E-14 102.6 20.2 191 82-284 431-652 (952)
232 COG1484 DnaC DNA replication p 99.3 3.8E-12 8.2E-17 108.8 3.9 170 10-196 31-210 (254)
233 PRK11331 5-methylcytosine-spec 99.2 8.6E-11 1.9E-15 106.3 12.5 154 60-223 174-368 (459)
234 PRK12377 putative replication 99.2 6.1E-11 1.3E-15 100.6 10.0 133 52-195 65-206 (248)
235 PRK10365 transcriptional regul 99.2 2.7E-09 5.8E-14 99.9 21.7 210 62-275 140-384 (441)
236 PF07726 AAA_3: ATPase family 99.2 1.4E-11 3E-16 91.7 4.7 111 84-206 1-129 (131)
237 PF07724 AAA_2: AAA domain (Cd 99.2 1.1E-11 2.3E-16 99.6 3.8 106 83-196 4-131 (171)
238 COG3267 ExeA Type II secretory 99.2 1.2E-09 2.6E-14 90.3 15.3 217 39-261 9-249 (269)
239 PF06144 DNA_pol3_delta: DNA p 99.2 8.3E-11 1.8E-15 95.3 7.9 163 85-261 1-171 (172)
240 PTZ00111 DNA replication licen 99.2 1.3E-09 2.8E-14 106.1 16.5 147 61-216 450-646 (915)
241 COG1239 ChlI Mg-chelatase subu 99.2 4.3E-09 9.4E-14 93.3 18.2 170 58-227 14-232 (423)
242 PRK09862 putative ATP-dependen 99.1 4.1E-09 8.9E-14 97.9 18.5 218 58-279 188-491 (506)
243 KOG0741 AAA+-type ATPase [Post 99.1 9.3E-10 2E-14 99.3 13.1 152 83-246 257-436 (744)
244 PRK08116 hypothetical protein; 99.1 5.8E-10 1.3E-14 96.3 11.4 156 52-216 76-251 (268)
245 PF14532 Sigma54_activ_2: Sigm 99.1 5.9E-10 1.3E-14 86.7 10.1 125 64-213 1-137 (138)
246 COG0606 Predicted ATPase with 99.1 8.1E-11 1.8E-15 105.6 5.8 122 57-182 175-310 (490)
247 smart00763 AAA_PrkA PrkA AAA d 99.1 2.1E-09 4.5E-14 94.9 14.2 94 152-245 233-348 (361)
248 COG1219 ClpX ATP-dependent pro 99.1 4.3E-09 9.2E-14 89.5 14.4 153 82-246 97-346 (408)
249 PRK07952 DNA replication prote 99.1 1.2E-09 2.6E-14 92.5 11.3 154 52-215 63-235 (244)
250 PF00931 NB-ARC: NB-ARC domain 99.1 7.9E-10 1.7E-14 97.3 10.6 190 67-260 2-206 (287)
251 KOG2170 ATPase of the AAA+ sup 99.1 4.3E-09 9.2E-14 88.8 14.1 175 63-246 84-319 (344)
252 COG3284 AcoR Transcriptional a 99.1 7.8E-09 1.7E-13 95.9 17.0 228 84-322 338-600 (606)
253 PF13173 AAA_14: AAA domain 99.1 2.8E-09 6E-14 81.8 11.2 120 83-219 3-127 (128)
254 PRK08939 primosomal protein Dn 99.0 5.8E-10 1.3E-14 97.9 7.6 136 46-195 114-261 (306)
255 PRK06921 hypothetical protein; 99.0 2.7E-09 5.8E-14 92.1 11.0 102 81-195 116-225 (266)
256 PRK13406 bchD magnesium chelat 99.0 4.4E-08 9.5E-13 93.1 18.8 206 66-277 8-247 (584)
257 PRK06835 DNA replication prote 99.0 3.6E-09 7.8E-14 93.7 10.8 123 83-215 184-318 (329)
258 smart00382 AAA ATPases associa 99.0 1.6E-08 3.4E-13 78.7 12.3 95 83-194 3-125 (148)
259 COG1220 HslU ATP-dependent pro 98.9 2.6E-08 5.7E-13 85.4 13.3 106 156-261 251-404 (444)
260 PF05729 NACHT: NACHT domain 98.9 9.5E-09 2.1E-13 82.5 9.6 144 85-228 3-164 (166)
261 KOG1051 Chaperone HSP104 and r 98.9 1.1E-08 2.5E-13 99.5 11.5 119 61-196 562-712 (898)
262 PF12774 AAA_6: Hydrolytic ATP 98.9 1.2E-07 2.6E-12 79.7 16.2 139 69-233 21-183 (231)
263 PF12775 AAA_7: P-loop contain 98.9 9.4E-09 2E-13 88.9 9.5 148 73-229 26-195 (272)
264 KOG0482 DNA replication licens 98.9 2.6E-07 5.7E-12 83.3 18.1 215 50-277 331-635 (721)
265 KOG0745 Putative ATP-dependent 98.9 9.6E-08 2.1E-12 84.6 14.6 214 82-311 226-490 (564)
266 PHA00729 NTP-binding motif con 98.8 2E-08 4.4E-13 83.2 9.3 126 73-225 8-138 (226)
267 KOG0736 Peroxisome assembly fa 98.8 1E-07 2.2E-12 90.0 14.8 166 65-248 405-596 (953)
268 TIGR02688 conserved hypothetic 98.8 2.7E-07 5.9E-12 82.8 16.4 114 55-196 185-314 (449)
269 KOG0478 DNA replication licens 98.8 4.6E-08 1E-12 91.0 11.3 144 62-217 430-616 (804)
270 PF13401 AAA_22: AAA domain; P 98.8 3.4E-09 7.4E-14 81.7 3.0 110 83-194 5-125 (131)
271 COG1241 MCM2 Predicted ATPase 98.8 3.9E-08 8.5E-13 93.6 10.1 145 52-209 277-463 (682)
272 PRK04841 transcriptional regul 98.8 6.8E-07 1.5E-11 91.3 19.9 188 56-254 9-223 (903)
273 KOG0480 DNA replication licens 98.8 8.2E-08 1.8E-12 88.7 11.6 214 54-279 338-642 (764)
274 COG1618 Predicted nucleotide k 98.8 3.8E-07 8.2E-12 70.2 13.0 128 84-225 7-173 (179)
275 COG4650 RtcR Sigma54-dependent 98.7 7.6E-07 1.6E-11 75.3 14.5 195 83-277 209-440 (531)
276 PLN03210 Resistant to P. syrin 98.7 2.6E-06 5.5E-11 88.7 21.1 190 57-254 180-393 (1153)
277 KOG0741 AAA+-type ATPase [Post 98.6 1.6E-06 3.5E-11 78.9 15.4 137 84-245 540-699 (744)
278 PF00493 MCM: MCM2/3/5 family 98.6 2.8E-09 6.1E-14 95.1 -2.1 135 62-209 25-201 (331)
279 PF14516 AAA_35: AAA-like doma 98.6 4.7E-05 1E-09 68.2 23.9 235 63-311 13-292 (331)
280 KOG0477 DNA replication licens 98.6 1.1E-06 2.5E-11 81.1 13.3 151 62-224 450-646 (854)
281 PRK15455 PrkA family serine pr 98.6 8.8E-06 1.9E-10 76.0 18.6 50 57-106 72-127 (644)
282 PRK10536 hypothetical protein; 98.5 1.2E-06 2.6E-11 74.0 11.4 59 46-106 39-98 (262)
283 PF13191 AAA_16: AAA ATPase do 98.5 1.4E-07 3E-12 77.2 5.8 48 62-109 1-51 (185)
284 COG1373 Predicted ATPase (AAA+ 98.5 4E-05 8.6E-10 70.3 22.0 203 70-293 26-262 (398)
285 PHA02774 E1; Provisional 98.5 1.1E-06 2.3E-11 81.9 11.7 137 68-233 419-587 (613)
286 PF03266 NTPase_1: NTPase; In 98.5 1.9E-07 4.1E-12 74.8 5.9 65 155-222 95-166 (168)
287 PF13604 AAA_30: AAA domain; P 98.5 9.6E-07 2.1E-11 72.9 10.2 120 69-196 6-132 (196)
288 PRK04132 replication factor C 98.5 1E-07 2.2E-12 93.5 4.3 52 47-98 5-56 (846)
289 KOG2543 Origin recognition com 98.5 2.2E-05 4.8E-10 69.0 17.8 198 61-272 6-247 (438)
290 PF00910 RNA_helicase: RNA hel 98.5 2.6E-07 5.6E-12 68.3 4.9 74 85-182 1-80 (107)
291 KOG2228 Origin recognition com 98.5 3.3E-06 7.2E-11 72.8 12.0 164 63-227 26-219 (408)
292 KOG0481 DNA replication licens 98.4 1.1E-06 2.4E-11 79.5 9.3 136 62-209 332-508 (729)
293 COG2909 MalT ATP-dependent tra 98.4 2.9E-05 6.2E-10 74.9 18.5 191 54-252 12-229 (894)
294 PF03969 AFG1_ATPase: AFG1-lik 98.4 1.2E-06 2.6E-11 78.7 8.3 119 81-214 61-201 (362)
295 PRK10875 recD exonuclease V su 98.4 3.5E-06 7.7E-11 80.8 11.3 110 84-196 169-303 (615)
296 TIGR01448 recD_rel helicase, p 98.3 8.1E-06 1.8E-10 80.3 12.2 122 66-195 325-453 (720)
297 COG5271 MDN1 AAA ATPase contai 98.3 3.9E-06 8.4E-11 85.5 9.8 149 84-246 890-1061(4600)
298 PF12780 AAA_8: P-loop contain 98.3 4.9E-05 1.1E-09 65.5 15.5 151 63-229 10-212 (268)
299 TIGR01447 recD exodeoxyribonuc 98.3 1E-05 2.3E-10 77.4 12.4 121 69-195 150-296 (586)
300 KOG3347 Predicted nucleotide k 98.3 2.3E-06 4.9E-11 65.0 5.9 27 80-106 5-31 (176)
301 PHA02624 large T antigen; Prov 98.3 8E-06 1.7E-10 76.6 10.8 116 71-213 419-561 (647)
302 PF10443 RNA12: RNA12 protein; 98.3 0.0002 4.3E-09 64.7 19.1 106 155-261 148-283 (431)
303 PF06309 Torsin: Torsin; Inte 98.2 1.1E-05 2.4E-10 60.2 8.8 52 62-113 26-84 (127)
304 COG5271 MDN1 AAA ATPase contai 98.2 4.9E-05 1.1E-09 77.9 14.6 132 83-226 1544-1702(4600)
305 COG1419 FlhF Flagellar GTP-bin 98.1 8.9E-05 1.9E-09 66.4 14.2 144 82-229 203-363 (407)
306 PF05970 PIF1: PIF1-like helic 98.1 1.3E-05 2.8E-10 72.8 9.2 124 66-193 6-149 (364)
307 PF07693 KAP_NTPase: KAP famil 98.1 0.001 2.2E-08 59.6 21.3 75 155-229 172-265 (325)
308 PRK12723 flagellar biosynthesi 98.1 1.3E-05 2.8E-10 72.6 8.9 147 83-233 175-341 (388)
309 PRK04296 thymidine kinase; Pro 98.1 2.7E-05 5.9E-10 63.9 9.9 91 85-192 5-113 (190)
310 PF04665 Pox_A32: Poxvirus A32 98.1 0.00023 4.9E-09 60.0 15.1 138 84-225 15-168 (241)
311 PTZ00202 tuzin; Provisional 98.1 0.0002 4.3E-09 64.9 15.2 51 56-106 257-310 (550)
312 cd00561 CobA_CobO_BtuR ATP:cor 98.1 4.3E-05 9.3E-10 60.1 9.7 51 154-207 94-147 (159)
313 PRK13695 putative NTPase; Prov 98.0 4.5E-05 9.8E-10 61.7 9.9 70 155-227 96-172 (174)
314 PRK05703 flhF flagellar biosyn 98.0 0.00013 2.9E-09 67.3 13.6 146 84-233 223-386 (424)
315 TIGR02768 TraA_Ti Ti-type conj 98.0 4.3E-05 9.3E-10 75.6 10.6 117 66-195 354-477 (744)
316 PF10236 DAP3: Mitochondrial r 98.0 0.00073 1.6E-08 59.9 17.3 48 208-255 258-308 (309)
317 cd01120 RecA-like_NTPases RecA 98.0 6E-05 1.3E-09 60.0 9.6 23 85-107 2-24 (165)
318 PF12169 DNA_pol3_gamma3: DNA 98.0 4E-05 8.8E-10 59.9 8.3 65 268-332 1-65 (143)
319 PF00448 SRP54: SRP54-type pro 98.0 6.7E-05 1.4E-09 61.8 9.6 147 84-232 3-168 (196)
320 PF09848 DUF2075: Uncharacteri 98.0 4E-05 8.8E-10 69.4 8.8 95 84-181 3-117 (352)
321 KOG4658 Apoptotic ATPase [Sign 97.9 0.00011 2.3E-09 73.7 12.5 191 64-258 161-363 (889)
322 PF04851 ResIII: Type III rest 97.9 6E-05 1.3E-09 61.3 9.0 43 65-107 7-50 (184)
323 PF02562 PhoH: PhoH-like prote 97.9 1.8E-05 3.8E-10 65.1 5.2 36 156-194 120-155 (205)
324 COG4088 Predicted nucleotide k 97.9 0.00016 3.4E-09 58.4 10.2 25 84-108 3-27 (261)
325 PRK14722 flhF flagellar biosyn 97.9 8.7E-05 1.9E-09 66.8 9.5 24 83-106 138-161 (374)
326 PRK13889 conjugal transfer rel 97.9 0.00012 2.7E-09 73.7 11.5 117 66-195 348-471 (988)
327 TIGR00708 cobA cob(I)alamin ad 97.9 0.00026 5.6E-09 56.4 11.0 51 154-207 96-149 (173)
328 cd00046 DEXDc DEAD-like helica 97.9 8.2E-05 1.8E-09 57.3 8.2 25 84-108 2-26 (144)
329 COG1485 Predicted ATPase [Gene 97.9 0.00027 5.9E-09 61.9 11.9 120 83-214 66-204 (367)
330 PF13671 AAA_33: AAA domain; P 97.9 7.1E-05 1.5E-09 58.3 7.9 22 85-106 2-23 (143)
331 PRK12727 flagellar biosynthesi 97.9 0.00082 1.8E-08 62.8 15.6 24 83-106 351-374 (559)
332 PF13207 AAA_17: AAA domain; P 97.9 1.6E-05 3.5E-10 60.1 3.8 22 85-106 2-23 (121)
333 PRK14532 adenylate kinase; Pro 97.9 0.0006 1.3E-08 55.9 13.4 23 84-106 2-24 (188)
334 KOG0479 DNA replication licens 97.8 0.00016 3.4E-09 67.0 10.4 143 62-216 302-487 (818)
335 PRK05986 cob(I)alamin adenolsy 97.8 0.00014 3.1E-09 58.8 8.8 51 154-207 114-167 (191)
336 PF05272 VirE: Virulence-assoc 97.8 0.00043 9.2E-09 57.0 11.7 99 85-213 55-169 (198)
337 PRK08118 topology modulation p 97.8 0.0004 8.6E-09 55.7 11.2 23 84-106 3-25 (167)
338 PRK14974 cell division protein 97.8 0.00017 3.7E-09 64.2 9.9 24 84-107 142-165 (336)
339 TIGR01359 UMP_CMP_kin_fam UMP- 97.8 0.00075 1.6E-08 55.0 13.1 22 85-106 2-23 (183)
340 PRK11889 flhF flagellar biosyn 97.8 0.00044 9.6E-09 62.2 11.7 25 83-107 242-266 (436)
341 COG3854 SpoIIIAA ncharacterize 97.7 0.0004 8.8E-09 57.1 10.4 35 73-107 128-162 (308)
342 PRK13826 Dtr system oriT relax 97.7 0.00018 3.9E-09 73.0 10.0 102 83-195 398-506 (1102)
343 TIGR01618 phage_P_loop phage n 97.7 4.2E-05 9.2E-10 63.7 4.5 22 83-104 13-34 (220)
344 PRK14528 adenylate kinase; Pro 97.7 0.0015 3.3E-08 53.4 13.4 24 83-106 2-25 (186)
345 PF01745 IPT: Isopentenyl tran 97.7 0.00037 8.1E-09 56.8 9.3 142 85-245 4-159 (233)
346 COG3899 Predicted ATPase [Gene 97.7 0.0046 1E-07 62.3 18.9 106 156-262 155-266 (849)
347 PF00519 PPV_E1_C: Papillomavi 97.6 0.00017 3.7E-09 64.0 7.4 132 70-229 249-411 (432)
348 TIGR02858 spore_III_AA stage I 97.6 0.00045 9.8E-09 59.7 9.9 29 78-106 107-135 (270)
349 PF13245 AAA_19: Part of AAA d 97.6 0.00018 3.9E-09 49.3 6.0 24 84-107 12-35 (76)
350 PRK07261 topology modulation p 97.6 0.0012 2.5E-08 53.3 11.5 23 84-106 2-24 (171)
351 PF00437 T2SE: Type II/IV secr 97.6 0.00069 1.5E-08 59.0 11.0 52 56-107 99-152 (270)
352 COG2842 Uncharacterized ATPase 97.6 0.00094 2E-08 57.2 10.9 191 59-264 70-279 (297)
353 smart00487 DEXDc DEAD-like hel 97.6 0.00046 9.9E-09 56.5 8.7 24 83-106 25-49 (201)
354 PRK12724 flagellar biosynthesi 97.6 0.00092 2E-08 60.8 10.9 145 85-233 226-388 (432)
355 PRK06762 hypothetical protein; 97.5 0.0018 3.8E-08 51.9 11.5 23 84-106 4-26 (166)
356 TIGR03574 selen_PSTK L-seryl-t 97.5 0.0016 3.4E-08 56.1 11.8 22 85-106 2-23 (249)
357 PRK00131 aroK shikimate kinase 97.5 0.00012 2.6E-09 59.1 4.7 25 82-106 4-28 (175)
358 cd01428 ADK Adenylate kinase ( 97.5 0.0012 2.7E-08 54.3 10.7 22 85-106 2-23 (194)
359 PF01443 Viral_helicase1: Vira 97.5 0.00016 3.5E-09 61.4 5.6 21 85-105 1-21 (234)
360 PRK00771 signal recognition pa 97.5 0.00068 1.5E-08 62.6 9.7 24 84-107 97-120 (437)
361 PRK14712 conjugal transfer nic 97.5 0.00086 1.9E-08 70.5 11.4 125 66-195 837-968 (1623)
362 PRK13900 type IV secretion sys 97.5 0.0078 1.7E-07 53.8 16.0 36 69-106 149-184 (332)
363 PRK00625 shikimate kinase; Pro 97.5 0.00013 2.7E-09 58.8 4.2 31 84-120 2-32 (173)
364 KOG1051 Chaperone HSP104 and r 97.5 0.0025 5.4E-08 63.1 13.5 173 61-244 186-384 (898)
365 KOG1808 AAA ATPase containing 97.5 0.00038 8.1E-09 73.2 8.1 147 71-227 430-599 (1856)
366 PRK13947 shikimate kinase; Pro 97.4 0.00016 3.5E-09 58.3 4.4 30 84-119 3-32 (171)
367 PRK03839 putative kinase; Prov 97.4 0.00014 3.1E-09 59.1 4.1 23 84-106 2-24 (180)
368 cd02020 CMPK Cytidine monophos 97.4 0.006 1.3E-07 47.6 13.2 22 85-106 2-23 (147)
369 COG1936 Predicted nucleotide k 97.4 0.00013 2.9E-09 57.2 3.5 22 84-106 2-23 (180)
370 PRK13709 conjugal transfer nic 97.4 0.0011 2.5E-08 70.4 11.4 125 66-195 969-1100(1747)
371 COG2804 PulE Type II secretory 97.4 0.00091 2E-08 61.6 9.4 53 56-109 233-285 (500)
372 PF13086 AAA_11: AAA domain; P 97.4 0.00015 3.3E-09 61.4 4.2 38 67-106 4-41 (236)
373 PRK09376 rho transcription ter 97.4 0.00011 2.5E-09 65.8 3.4 30 80-109 167-196 (416)
374 cd01131 PilT Pilus retraction 97.4 0.0016 3.5E-08 53.8 10.0 24 84-107 3-26 (198)
375 COG2884 FtsE Predicted ATPase 97.4 0.00069 1.5E-08 54.1 7.3 57 154-210 154-211 (223)
376 PRK06547 hypothetical protein; 97.4 0.00033 7.3E-09 56.3 5.7 31 76-106 9-39 (172)
377 cd01128 rho_factor Transcripti 97.4 0.0017 3.7E-08 55.4 10.2 29 80-108 14-42 (249)
378 PRK14527 adenylate kinase; Pro 97.4 0.0034 7.3E-08 51.6 11.7 24 83-106 7-30 (191)
379 cd01129 PulE-GspE PulE/GspE Th 97.4 0.0039 8.5E-08 53.9 12.4 50 57-107 56-105 (264)
380 PRK12726 flagellar biosynthesi 97.4 0.00062 1.3E-08 61.0 7.5 23 84-106 208-230 (407)
381 PRK05800 cobU adenosylcobinami 97.4 0.0015 3.3E-08 52.5 9.1 23 84-106 3-25 (170)
382 TIGR00150 HI0065_YjeE ATPase, 97.4 0.00069 1.5E-08 51.7 6.7 25 84-108 24-48 (133)
383 PHA02530 pseT polynucleotide k 97.4 0.0051 1.1E-07 54.4 13.4 23 84-106 4-26 (300)
384 PRK14721 flhF flagellar biosyn 97.4 0.0032 7E-08 57.7 12.2 23 84-106 193-215 (420)
385 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.4 0.0019 4.1E-08 50.4 9.3 94 83-195 27-127 (144)
386 cd03216 ABC_Carb_Monos_I This 97.4 0.0021 4.5E-08 51.4 9.8 100 83-195 27-142 (163)
387 cd00464 SK Shikimate kinase (S 97.4 0.00024 5.2E-09 56.1 4.3 23 84-106 1-23 (154)
388 KOG0922 DEAH-box RNA helicase 97.4 0.0029 6.2E-08 59.8 11.8 41 152-192 160-202 (674)
389 PRK13808 adenylate kinase; Pro 97.4 0.0047 1E-07 54.8 12.6 23 84-106 2-24 (333)
390 TIGR00767 rho transcription te 97.4 0.00086 1.9E-08 60.5 8.1 29 80-108 166-194 (415)
391 TIGR02782 TrbB_P P-type conjug 97.4 0.0047 1E-07 54.4 12.7 48 57-106 105-156 (299)
392 TIGR02788 VirB11 P-type DNA tr 97.3 0.005 1.1E-07 54.7 12.8 24 83-106 145-168 (308)
393 PRK02496 adk adenylate kinase; 97.3 0.0025 5.5E-08 52.0 10.1 23 84-106 3-25 (184)
394 PF05707 Zot: Zonular occluden 97.3 0.0007 1.5E-08 55.7 6.8 57 155-212 79-144 (193)
395 PF13238 AAA_18: AAA domain; P 97.3 0.00019 4.2E-09 54.6 3.2 22 85-106 1-22 (129)
396 PRK10867 signal recognition pa 97.3 0.027 5.8E-07 52.1 17.5 23 85-107 103-125 (433)
397 TIGR02237 recomb_radB DNA repa 97.3 0.0025 5.3E-08 53.2 10.0 44 85-132 15-58 (209)
398 TIGR01420 pilT_fam pilus retra 97.3 0.0036 7.8E-08 56.5 11.7 25 83-107 123-147 (343)
399 cd00267 ABC_ATPase ABC (ATP-bi 97.3 0.0022 4.8E-08 50.8 9.3 98 83-196 26-141 (157)
400 PRK13949 shikimate kinase; Pro 97.3 0.00028 6E-09 56.7 4.1 23 84-106 3-25 (169)
401 COG0703 AroK Shikimate kinase 97.3 0.00026 5.7E-09 56.1 3.8 32 83-120 3-34 (172)
402 TIGR03499 FlhF flagellar biosy 97.3 0.00058 1.3E-08 59.7 6.3 24 84-107 196-219 (282)
403 KOG3928 Mitochondrial ribosome 97.3 0.012 2.7E-07 52.6 14.4 49 206-254 403-454 (461)
404 TIGR02760 TraI_TIGR conjugativ 97.3 0.0021 4.5E-08 70.1 11.6 123 65-194 430-566 (1960)
405 PF08303 tRNA_lig_kinase: tRNA 97.3 0.0065 1.4E-07 47.6 11.3 122 88-229 5-145 (168)
406 cd02019 NK Nucleoside/nucleoti 97.3 0.00031 6.8E-09 47.2 3.5 22 85-106 2-23 (69)
407 PF13337 Lon_2: Putative ATP-d 97.3 0.0024 5.2E-08 58.3 9.9 92 83-196 209-312 (457)
408 PF08433 KTI12: Chromatin asso 97.3 0.0026 5.6E-08 55.1 9.8 93 84-191 3-105 (270)
409 cd03115 SRP The signal recogni 97.3 0.0011 2.4E-08 53.5 7.2 23 85-107 3-25 (173)
410 PRK06217 hypothetical protein; 97.3 0.00034 7.3E-09 57.1 4.2 23 84-106 3-25 (183)
411 PF13479 AAA_24: AAA domain 97.3 0.00025 5.3E-09 59.4 3.4 20 84-103 5-24 (213)
412 cd02021 GntK Gluconate kinase 97.2 0.00033 7.2E-09 55.1 4.0 22 85-106 2-23 (150)
413 TIGR00064 ftsY signal recognit 97.2 0.0015 3.2E-08 56.7 8.1 23 85-107 75-97 (272)
414 cd03228 ABCC_MRP_Like The MRP 97.2 0.0049 1.1E-07 49.6 10.6 43 155-197 114-157 (171)
415 PRK14530 adenylate kinase; Pro 97.2 0.00042 9.1E-09 58.1 4.5 24 83-106 4-27 (215)
416 PRK00091 miaA tRNA delta(2)-is 97.2 0.0016 3.5E-08 57.3 8.2 23 84-106 6-28 (307)
417 PF00406 ADK: Adenylate kinase 97.2 0.0044 9.6E-08 48.8 9.9 20 87-106 1-20 (151)
418 PRK00279 adk adenylate kinase; 97.2 0.0052 1.1E-07 51.5 10.8 22 85-106 3-24 (215)
419 PRK06995 flhF flagellar biosyn 97.2 0.0026 5.6E-08 59.3 9.6 23 84-106 258-280 (484)
420 TIGR00959 ffh signal recogniti 97.2 0.038 8.2E-07 51.1 17.1 145 85-233 102-268 (428)
421 cd03222 ABC_RNaseL_inhibitor T 97.2 0.0048 1.1E-07 49.9 10.0 25 82-106 25-49 (177)
422 cd01878 HflX HflX subfamily. 97.2 0.022 4.7E-07 47.2 14.4 24 82-105 41-64 (204)
423 PLN02674 adenylate kinase 97.2 0.0084 1.8E-07 50.9 11.8 25 82-106 31-55 (244)
424 TIGR01313 therm_gnt_kin carboh 97.2 0.00039 8.6E-09 55.5 3.7 22 85-106 1-22 (163)
425 PRK06696 uridine kinase; Valid 97.2 0.00079 1.7E-08 56.8 5.6 42 66-107 3-47 (223)
426 PRK06067 flagellar accessory p 97.1 0.0029 6.2E-08 53.9 8.9 22 85-106 28-49 (234)
427 TIGR00174 miaA tRNA isopenteny 97.1 0.0053 1.1E-07 53.4 10.5 22 85-106 2-23 (287)
428 cd03247 ABCC_cytochrome_bd The 97.1 0.0064 1.4E-07 49.3 10.5 44 154-197 115-159 (178)
429 COG1102 Cmk Cytidylate kinase 97.1 0.00047 1E-08 53.5 3.6 22 85-106 3-24 (179)
430 COG4178 ABC-type uncharacteriz 97.1 0.0022 4.7E-08 60.9 8.6 41 154-194 532-573 (604)
431 PRK14531 adenylate kinase; Pro 97.1 0.00059 1.3E-08 55.7 4.4 23 84-106 4-26 (183)
432 PRK13948 shikimate kinase; Pro 97.1 0.00073 1.6E-08 54.8 4.8 33 82-120 10-42 (182)
433 PRK06731 flhF flagellar biosyn 97.1 0.008 1.7E-07 51.9 11.4 25 83-107 76-100 (270)
434 PRK10416 signal recognition pa 97.1 0.0032 6.8E-08 55.9 9.0 23 85-107 117-139 (318)
435 cd03214 ABC_Iron-Siderophores_ 97.1 0.0048 1E-07 50.2 9.5 43 154-196 114-159 (180)
436 cd01121 Sms Sms (bacterial rad 97.1 0.0046 1E-07 56.1 10.2 49 71-122 69-119 (372)
437 TIGR01360 aden_kin_iso1 adenyl 97.1 0.00068 1.5E-08 55.5 4.5 24 83-106 4-27 (188)
438 TIGR01613 primase_Cterm phage/ 97.1 0.002 4.4E-08 57.1 7.7 132 61-213 48-203 (304)
439 KOG2383 Predicted ATPase [Gene 97.1 0.0044 9.5E-08 55.3 9.5 25 82-106 114-138 (467)
440 cd00227 CPT Chloramphenicol (C 97.1 0.00062 1.4E-08 55.1 4.1 23 84-106 4-26 (175)
441 cd01394 radB RadB. The archaea 97.1 0.0094 2E-07 50.1 11.4 35 85-122 22-56 (218)
442 cd03246 ABCC_Protease_Secretio 97.1 0.0084 1.8E-07 48.4 10.6 42 155-196 114-157 (173)
443 cd03238 ABC_UvrA The excision 97.1 0.0036 7.7E-08 50.6 8.3 41 156-196 108-150 (176)
444 PRK12608 transcription termina 97.1 0.00099 2.1E-08 59.7 5.5 29 80-108 131-159 (380)
445 cd03213 ABCG_EPDR ABCG transpo 97.1 0.0019 4.1E-08 53.3 6.8 24 83-106 36-59 (194)
446 COG1061 SSL2 DNA or RNA helica 97.1 0.0058 1.2E-07 57.1 10.8 42 66-107 38-80 (442)
447 TIGR01967 DEAH_box_HrpA ATP-de 97.1 0.0069 1.5E-07 62.8 12.1 38 67-106 69-106 (1283)
448 PRK05057 aroK shikimate kinase 97.1 0.00082 1.8E-08 54.2 4.5 24 83-106 5-28 (172)
449 COG2805 PilT Tfp pilus assembl 97.1 0.049 1.1E-06 47.1 15.1 37 84-122 127-163 (353)
450 PRK05973 replicative DNA helic 97.1 0.003 6.5E-08 53.4 8.0 22 85-106 67-88 (237)
451 PTZ00088 adenylate kinase 1; P 97.0 0.00075 1.6E-08 56.9 4.3 23 84-106 8-30 (229)
452 COG0563 Adk Adenylate kinase a 97.0 0.00076 1.7E-08 54.5 4.1 23 84-106 2-24 (178)
453 PRK03731 aroL shikimate kinase 97.0 0.0009 1.9E-08 53.9 4.5 31 83-119 3-33 (171)
454 TIGR00643 recG ATP-dependent D 97.0 0.0049 1.1E-07 60.3 10.3 36 65-100 239-274 (630)
455 PF10923 DUF2791: P-loop Domai 97.0 0.059 1.3E-06 49.4 16.3 90 157-246 241-371 (416)
456 PRK13946 shikimate kinase; Pro 97.0 0.00088 1.9E-08 54.7 4.3 24 83-106 11-34 (184)
457 KOG0923 mRNA splicing factor A 97.0 0.0065 1.4E-07 57.4 10.2 42 151-192 374-417 (902)
458 COG1643 HrpA HrpA-like helicas 97.0 0.0078 1.7E-07 59.8 11.4 38 67-106 52-89 (845)
459 PRK11823 DNA repair protein Ra 97.0 0.0063 1.4E-07 56.8 10.3 49 71-122 67-117 (446)
460 TIGR02533 type_II_gspE general 97.0 0.0058 1.3E-07 57.6 10.0 50 57-107 218-267 (486)
461 PF00270 DEAD: DEAD/DEAH box h 97.0 0.0047 1E-07 49.4 8.3 22 83-104 15-36 (169)
462 PRK10436 hypothetical protein; 97.0 0.0066 1.4E-07 56.6 10.1 50 58-108 195-244 (462)
463 cd00544 CobU Adenosylcobinamid 97.0 0.0087 1.9E-07 48.0 9.5 21 85-105 2-22 (169)
464 PRK13833 conjugal transfer pro 97.0 0.0016 3.5E-08 57.7 5.8 38 67-106 131-168 (323)
465 TIGR02525 plasmid_TraJ plasmid 97.0 0.014 3E-07 52.9 11.8 25 83-107 150-174 (372)
466 COG1066 Sms Predicted ATP-depe 97.0 0.016 3.5E-07 52.1 11.8 49 71-123 80-130 (456)
467 COG1100 GTPase SAR1 and relate 96.9 0.0098 2.1E-07 49.9 10.3 103 84-199 7-125 (219)
468 PF08298 AAA_PrkA: PrkA AAA do 96.9 0.0021 4.5E-08 56.9 6.2 48 59-106 58-112 (358)
469 cd03283 ABC_MutS-like MutS-lik 96.9 0.01 2.2E-07 49.0 10.1 24 83-106 26-49 (199)
470 TIGR01663 PNK-3'Pase polynucle 96.9 0.0055 1.2E-07 57.9 9.4 22 85-106 372-393 (526)
471 cd04124 RabL2 RabL2 subfamily. 96.9 0.0069 1.5E-07 48.1 8.8 22 85-106 3-24 (161)
472 cd01130 VirB11-like_ATPase Typ 96.9 0.0017 3.7E-08 53.1 5.4 38 67-106 12-49 (186)
473 CHL00195 ycf46 Ycf46; Provisio 96.9 0.02 4.4E-07 53.8 13.0 118 156-275 82-203 (489)
474 TIGR03878 thermo_KaiC_2 KaiC d 96.9 0.0052 1.1E-07 53.1 8.5 22 85-106 39-60 (259)
475 PF09439 SRPRB: Signal recogni 96.9 0.0032 7E-08 50.7 6.6 25 82-106 3-27 (181)
476 PRK05541 adenylylsulfate kinas 96.9 0.0012 2.5E-08 53.6 3.9 24 84-107 9-32 (176)
477 KOG3354 Gluconate kinase [Carb 96.9 0.012 2.6E-07 45.5 8.9 23 84-106 14-36 (191)
478 TIGR00376 DNA helicase, putati 96.9 0.0038 8.3E-08 60.9 7.9 40 66-107 159-198 (637)
479 TIGR01425 SRP54_euk signal rec 96.9 0.006 1.3E-07 56.1 8.7 23 85-107 103-125 (429)
480 cd03281 ABC_MSH5_euk MutS5 hom 96.9 0.0085 1.8E-07 50.1 9.1 22 83-104 30-51 (213)
481 PRK08233 hypothetical protein; 96.9 0.00093 2E-08 54.3 3.3 23 84-106 5-27 (182)
482 TIGR02538 type_IV_pilB type IV 96.9 0.0076 1.6E-07 58.1 9.9 49 58-107 293-341 (564)
483 cd03223 ABCD_peroxisomal_ALDP 96.8 0.018 4E-07 46.0 10.6 110 84-195 29-148 (166)
484 cd03243 ABC_MutS_homologs The 96.8 0.0091 2E-07 49.5 9.2 21 84-104 31-51 (202)
485 PRK04040 adenylate kinase; Pro 96.8 0.001 2.2E-08 54.4 3.3 23 84-106 4-26 (188)
486 PLN02200 adenylate kinase fami 96.8 0.0015 3.2E-08 55.5 4.4 23 84-106 45-67 (234)
487 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 96.8 0.021 4.5E-07 45.5 10.9 22 84-105 4-25 (166)
488 TIGR01351 adk adenylate kinase 96.8 0.0013 2.9E-08 54.9 4.0 22 85-106 2-23 (210)
489 PF13521 AAA_28: AAA domain; P 96.8 0.0008 1.7E-08 53.8 2.5 21 85-105 2-22 (163)
490 cd03230 ABC_DR_subfamily_A Thi 96.8 0.015 3.2E-07 46.9 9.9 41 155-195 113-155 (173)
491 cd03280 ABC_MutS2 MutS2 homolo 96.8 0.0073 1.6E-07 50.0 8.3 20 84-103 30-49 (200)
492 TIGR02322 phosphon_PhnN phosph 96.8 0.0012 2.7E-08 53.6 3.4 23 84-106 3-25 (179)
493 COG1119 ModF ABC-type molybden 96.8 0.018 3.8E-07 48.3 10.0 52 155-206 189-244 (257)
494 TIGR00603 rad25 DNA repair hel 96.8 0.018 3.9E-07 56.4 11.7 42 65-106 256-297 (732)
495 COG1067 LonB Predicted ATP-dep 96.8 0.017 3.7E-07 55.8 11.4 227 53-279 96-398 (647)
496 PRK08154 anaerobic benzoate ca 96.8 0.0026 5.6E-08 56.5 5.5 31 83-119 134-164 (309)
497 TIGR02760 TraI_TIGR conjugativ 96.8 0.01 2.2E-07 64.9 10.9 121 66-196 1021-1151(1960)
498 COG0572 Udk Uridine kinase [Nu 96.8 0.0062 1.3E-07 50.3 7.2 24 85-108 11-34 (218)
499 cd04106 Rab23_lke Rab23-like s 96.7 0.029 6.2E-07 44.4 11.1 21 85-105 3-23 (162)
500 PF05872 DUF853: Bacterial pro 96.7 0.0061 1.3E-07 55.5 7.7 55 153-207 253-312 (502)
No 1
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=100.00 E-value=1.3e-47 Score=318.11 Aligned_cols=280 Identities=53% Similarity=0.829 Sum_probs=257.7
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (345)
..+.|++||+|++|++++||+.+++.|.+.+.....|++|||||||||||++|.+++++++|++.....+.+.++++.++
T Consensus 22 ~~~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderG 101 (346)
T KOG0989|consen 22 KHRSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERG 101 (346)
T ss_pred CccchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccc
Confidence 34459999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccc
Q 019145 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206 (345)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~ 206 (345)
...++..++.+........ ...+....+++|+|+||+|.++.+.|+.|++.+|+++.+++||++||...++++.+.+||
T Consensus 102 isvvr~Kik~fakl~~~~~-~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC 180 (346)
T KOG0989|consen 102 ISVVREKIKNFAKLTVLLK-RSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRC 180 (346)
T ss_pred ccchhhhhcCHHHHhhccc-cccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhH
Confidence 9999999988887755433 333445567899999999999999999999999999999999999999999999999999
Q ss_pred eeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHhhCCCCHHHH
Q 019145 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT-SKDLISVSGVIPPEVV 285 (345)
Q Consensus 207 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it-~~~v~~~~~~~~~~~~ 285 (345)
..+.|+++..+++...|+.+|.++|+.++++++..|++.|+||+|+|+..||.++. .|++|| ...++.+.|..+++.+
T Consensus 181 ~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~-~gk~It~~~~~e~~~GvVp~~~l 259 (346)
T KOG0989|consen 181 QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSL-LGKRITTSLVNEELAGVVPDEKL 259 (346)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhc-cCcccchHHHHHHHhccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999997 578899 4555666668999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 019145 286 EGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVL 328 (345)
Q Consensus 286 ~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~ 328 (345)
.++++.+..+|..+..+..+++.+.|++|.+++++|...+...
T Consensus 260 ~~lle~a~S~d~~~~v~~~Rei~~sg~~~~~lmsQLa~vi~~~ 302 (346)
T KOG0989|consen 260 LDLLELALSADTPNTVKRVREIMRSGYSPLQLMSQLAEVIMDI 302 (346)
T ss_pred HHHHHHHHccChHHHHHHHHHHHHhccCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999888887766
No 2
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=7e-44 Score=321.58 Aligned_cols=276 Identities=25% Similarity=0.385 Sum_probs=249.3
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-------------
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------- 111 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~------------- 111 (345)
...++|++||||.+|++++||++++..|..++..++.++ +||+||+|||||++|+.+++.++|...
T Consensus 3 ~~~~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~ 82 (484)
T PRK14956 3 GTHEVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCL 82 (484)
T ss_pred CCcchhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHH
Confidence 467899999999999999999999999999999999887 799999999999999999999987532
Q ss_pred -----CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCce
Q 019145 112 -----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVT 186 (345)
Q Consensus 112 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~ 186 (345)
...+++++++....+.+.+++........+. .++++|+||||+|.++...++.|++.+|+++.++
T Consensus 83 ~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~----------~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~v 152 (484)
T PRK14956 83 EITKGISSDVLEIDAASNRGIENIRELRDNVKFAPM----------GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHI 152 (484)
T ss_pred HHHccCCccceeechhhcccHHHHHHHHHHHHhhhh----------cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCce
Confidence 2336778887766777888777666543221 2367899999999999999999999999999999
Q ss_pred EEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCC
Q 019145 187 RFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266 (345)
Q Consensus 187 ~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~ 266 (345)
.||++|+...++.+++++||..+.|.+++.+++.+++++++..+|+.++++++..|++.++|++|.+++.|+.+..+.++
T Consensus 153 iFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~~~ 232 (484)
T PRK14956 153 VFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDS 232 (484)
T ss_pred EEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988777667
Q ss_pred CCCHHHHHHhhCCCCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 019145 267 SITSKDLISVSGVIPPEVVEGLFAVCRSGDF-DLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQ 331 (345)
Q Consensus 267 ~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~-~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~ 331 (345)
.||.+.|.++++..+++.++++++++.+++. .+++.++.+|++.|+||..++..|...+|.+++-
T Consensus 233 ~it~~~V~~~lg~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~~~l~~~~r~l~~~ 298 (484)
T PRK14956 233 KLTGVKIRKMIGYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFLWDSIEFTHTLNLI 298 (484)
T ss_pred CcCHHHHHHHhCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999875 6899999999999999999999999999998753
No 3
>PLN03025 replication factor C subunit; Provisional
Probab=100.00 E-value=3.3e-43 Score=312.22 Aligned_cols=271 Identities=42% Similarity=0.659 Sum_probs=243.6
Q ss_pred chhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchH
Q 019145 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN 128 (345)
Q Consensus 49 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 128 (345)
.||++||||.+|++++|+++++..|..++..+..++++|+||||||||++|+++++++.+... ...++++++++..+.+
T Consensus 1 ~~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~-~~~~~eln~sd~~~~~ 79 (319)
T PLN03025 1 LPWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNY-KEAVLELNASDDRGID 79 (319)
T ss_pred CChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccC-ccceeeecccccccHH
Confidence 489999999999999999999999999999999999999999999999999999999977543 3468889998888888
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhcccee
Q 019145 129 VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAK 208 (345)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~~ 208 (345)
.+++.+..+...... ...+++++++|||+|.++...++.|+++++.++..+.+|++||...++.+++++||..
T Consensus 80 ~vr~~i~~~~~~~~~-------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~ 152 (319)
T PLN03025 80 VVRNKIKMFAQKKVT-------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAI 152 (319)
T ss_pred HHHHHHHHHHhcccc-------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhc
Confidence 888777765443211 1123578999999999999999999999999888899999999999999999999999
Q ss_pred EEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhhCCCCHHHHHHH
Q 019145 209 FRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGL 288 (345)
Q Consensus 209 i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~~~~~~~~~l 288 (345)
+.|++++.+++..++..+++++|+.+++++++.+++.++||+|.+++.|+.+... .+.||.++|.++.+...++.++.+
T Consensus 153 i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~~-~~~i~~~~v~~~~~~~~~~~i~~~ 231 (319)
T PLN03025 153 VRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSG-FGFVNQENVFKVCDQPHPLHVKNI 231 (319)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCHHHHHHHcCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999965532 457999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 019145 289 FAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVL 328 (345)
Q Consensus 289 ~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~ 328 (345)
++++..++.+.++..+.+|+..|++|..|+..|.+.+...
T Consensus 232 i~~~~~~~~~~a~~~l~~ll~~g~~~~~Il~~l~~~~~~~ 271 (319)
T PLN03025 232 VRNCLKGKFDDACDGLKQLYDLGYSPTDIITTLFRVVKNY 271 (319)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999998777644
No 4
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=100.00 E-value=6.6e-44 Score=284.58 Aligned_cols=279 Identities=40% Similarity=0.637 Sum_probs=258.2
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (345)
-..||++||||..+.|++|+++.+..+.-..+.+..||++|.|||||||||.+.++|+++.++.. ...+.++|+++.++
T Consensus 13 ~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~-ke~vLELNASdeRG 91 (333)
T KOG0991|consen 13 YQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSY-KEAVLELNASDERG 91 (333)
T ss_pred ccchHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhh-hhHhhhccCccccc
Confidence 34579999999999999999999999999999999999999999999999999999999976543 34688999999999
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccc
Q 019145 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206 (345)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~ 206 (345)
++.++..++.|++.... .+.++.+++|+||+|.++...|.+|.+.+|-++..++|.++||...++.+++.|||
T Consensus 92 IDvVRn~IK~FAQ~kv~-------lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~KIiEPIQSRC 164 (333)
T KOG0991|consen 92 IDVVRNKIKMFAQKKVT-------LPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSEKIIEPIQSRC 164 (333)
T ss_pred cHHHHHHHHHHHHhhcc-------CCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcchhhhhhhHHhhh
Confidence 99999999999877544 23457789999999999999999999999999999999999999999999999999
Q ss_pred eeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhhCCCCHHHHH
Q 019145 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286 (345)
Q Consensus 207 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~~~~~~~~ 286 (345)
.++.|..+++.++...+..+++.+++.++++.++.++.-+.||+|.++|+||...... +.|+.+.|-.+.+..++..+.
T Consensus 165 AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~-g~Vn~enVfKv~d~PhP~~v~ 243 (333)
T KOG0991|consen 165 AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGF-GLVNQENVFKVCDEPHPLLVK 243 (333)
T ss_pred HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhccc-cccchhhhhhccCCCChHHHH
Confidence 9999999999999999999999999999999999999999999999999999887544 459999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhh
Q 019145 287 GLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQHSR 334 (345)
Q Consensus 287 ~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~ 334 (345)
+++.++..++++.|.+++..+.+.|++|.+|+..++|..+++-++++.
T Consensus 244 ~ml~~~~~~~~~~A~~il~~lw~lgysp~Dii~~~FRv~K~~~~~E~~ 291 (333)
T KOG0991|consen 244 KMLQACLKRNIDEALKILAELWKLGYSPEDIITTLFRVVKNMDVAESL 291 (333)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccHHHHH
Confidence 999999999999999999999999999999999999999888555543
No 5
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3e-43 Score=326.34 Aligned_cols=274 Identities=22% Similarity=0.336 Sum_probs=251.8
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~-------------- 111 (345)
++++|++||||.+|++++||+++++.|.+++..++.+| +||+||+|||||++|+.+++.++|...
T Consensus 2 ~y~~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~ 81 (509)
T PRK14958 2 AHQVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCRE 81 (509)
T ss_pred CchhHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHH
Confidence 57899999999999999999999999999999999998 599999999999999999999988532
Q ss_pred ----CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceE
Q 019145 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (345)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ 187 (345)
...+++++++....+.+.+++.+......+ ..++++|+||||+|+++...++.|++++|+++.++.
T Consensus 82 i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p----------~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~ 151 (509)
T PRK14958 82 IDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAP----------TKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVK 151 (509)
T ss_pred HhcCCCceEEEEcccccCCHHHHHHHHHHHhhcc----------ccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeE
Confidence 223578888877788888888777654332 234788999999999999999999999999999999
Q ss_pred EEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Q 019145 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~ 267 (345)
||++|+.+.++++.+.+||..++|.+++.+++..++..+++++|+.++++++..|++.++|++|.+++.++++..+.++.
T Consensus 152 fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia~~~~~ 231 (509)
T PRK14958 152 FILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGK 231 (509)
T ss_pred EEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988776678
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
||.++|.++++...+..+|++++++..++.+.++..++.|...|+++..++..|...++++++
T Consensus 232 It~~~V~~~lg~~~~~~i~~ll~al~~~d~~~~l~~~~~l~~~g~~~~~il~~l~~~~~~~~~ 294 (509)
T PRK14958 232 VLIADVKTMLGTIEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIAI 294 (509)
T ss_pred cCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998865
No 6
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=5.5e-42 Score=315.58 Aligned_cols=275 Identities=24% Similarity=0.348 Sum_probs=250.3
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-------------
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------- 111 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~------------- 111 (345)
+.+.||+++|||.+|++++||++++..|...+..++.++ +||+||+|||||++|+++++.++|...
T Consensus 6 ~~y~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C 85 (507)
T PRK06645 6 NQYIPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC 85 (507)
T ss_pred ccccchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC
Confidence 678899999999999999999999999999998888765 799999999999999999999987431
Q ss_pred ---------CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc
Q 019145 112 ---------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (345)
Q Consensus 112 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~ 182 (345)
...+++++++....+.+.+++.++.....+ ..++++|+||||+|.++...++.|+++++++
T Consensus 86 ~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P----------~~~~~KVvIIDEa~~Ls~~a~naLLk~LEep 155 (507)
T PRK06645 86 TNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKP----------LQGKHKIFIIDEVHMLSKGAFNALLKTLEEP 155 (507)
T ss_pred hHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhcc----------ccCCcEEEEEEChhhcCHHHHHHHHHHHhhc
Confidence 234677888877778888888877654332 2357889999999999999999999999999
Q ss_pred CCceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019145 183 SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (345)
Q Consensus 183 ~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~ 262 (345)
+.++.+|++++...++++++.+||..+.|.+++.+++..++..+++++|+.++++++..|++.++||+|.+++.|++++.
T Consensus 156 p~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai~ 235 (507)
T PRK06645 156 PPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAAS 235 (507)
T ss_pred CCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HhC---CCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 263 LFG---SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 263 ~~~---~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
+++ +.||.++|.++++...+..+|++++++..++...|+..+++|+..|++|..++..|..+++.++.
T Consensus 236 ~~~~~~~~It~~~V~~llg~~~~~~if~L~~ai~~~d~~~Al~~l~~L~~~g~~~~~~l~~l~~~~~~l~~ 306 (507)
T PRK06645 236 MSAKSDNIISPQVINQMLGLVDSSVIIEFVEYIIHRETEKAINLINKLYGSSVNLEIFIESVSDFIAYLNK 306 (507)
T ss_pred hhccCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 764 36999999999999999999999999999999999999999999999999999999999997764
No 7
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=4e-42 Score=320.69 Aligned_cols=275 Identities=24% Similarity=0.332 Sum_probs=250.6
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcE-EEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~l-ll~G~~G~GKT~la~~la~~l~~~~~-------------- 111 (345)
+++.|.+||||++|++++||+++++.|.+++..++.+|. ||+||+|||||++++.+++.++|...
T Consensus 2 sY~vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~ 81 (830)
T PRK07003 2 TYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACRE 81 (830)
T ss_pred ccHhHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHH
Confidence 577899999999999999999999999999999998885 99999999999999999999987532
Q ss_pred ----CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceE
Q 019145 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (345)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ 187 (345)
...++++++..+..+.+.+++.++...... ..++++|+||||+|+|+...++.|++.||+++.++.
T Consensus 82 I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P----------~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~ 151 (830)
T PRK07003 82 IDEGRFVDYVEMDAASNRGVDEMAALLERAVYAP----------VDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVK 151 (830)
T ss_pred HhcCCCceEEEecccccccHHHHHHHHHHHHhcc----------ccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeE
Confidence 123578888887778888888776654322 224678999999999999999999999999999999
Q ss_pred EEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Q 019145 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~ 267 (345)
||++||...++.+.|+|||..+.|.+++.+++.++|.++++.+++.++++++..|++.++||+|++++.++.+..+.++.
T Consensus 152 FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~~~~~ 231 (830)
T PRK07003 152 FILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANE 231 (830)
T ss_pred EEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888777778
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQ 331 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~ 331 (345)
|+.+.|..+++......++.+++++..++...++..+++|...|.+...++..|...+++++..
T Consensus 232 It~~~V~~~LG~~d~~~i~~ll~aL~~~d~~~~l~~~~~l~~~g~~~~~~l~dLl~~l~~~~~~ 295 (830)
T PRK07003 232 VTETAVSGMLGALDQTYMVRLLDALAAGDGPEILAVADEMALRSLSFSTALQDLASLLHRIAWA 295 (830)
T ss_pred cCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999987653
No 8
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4.5e-42 Score=313.53 Aligned_cols=270 Identities=23% Similarity=0.401 Sum_probs=248.3
Q ss_pred hhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-----------------
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL----------------- 111 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~----------------- 111 (345)
.|++||||.+|++++||+++++.|.+++..++.++ +||+||+|+||||+|+.+|+.++|...
T Consensus 2 ~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~ 81 (491)
T PRK14964 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKN 81 (491)
T ss_pred ChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhc
Confidence 37899999999999999999999999999999886 899999999999999999999987432
Q ss_pred -CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEE
Q 019145 112 -YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFF 190 (345)
Q Consensus 112 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~ 190 (345)
...+++++++.+..+.+.+++.+......+ ..++++++||||+|.++...++.|++++|++++++.+|+
T Consensus 82 ~~~~Dv~eidaas~~~vddIR~Iie~~~~~P----------~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIl 151 (491)
T PRK14964 82 SNHPDVIEIDAASNTSVDDIKVILENSCYLP----------ISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFIL 151 (491)
T ss_pred cCCCCEEEEecccCCCHHHHHHHHHHHHhcc----------ccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 356789999988888999988887755432 235789999999999999999999999999999999999
Q ss_pred ecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCH
Q 019145 191 ICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITS 270 (345)
Q Consensus 191 ~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~ 270 (345)
+++...++.+++++||..+.|.+++.+++..++..+++++|+.++++++..|++.++|++|.+++.++++..+.++.||.
T Consensus 152 atte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli~y~~~~It~ 231 (491)
T PRK14964 152 ATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISE 231 (491)
T ss_pred EeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 271 KDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 271 ~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
++|.++++......+|++++++.+++..+++..+.+|+..| +|..++..|...++.+..
T Consensus 232 e~V~~llg~~~~~~If~L~~aI~~~d~~~Al~~l~~Ll~~g-~~~~i~~~l~~~~~~~~~ 290 (491)
T PRK14964 232 KSVRDLLGCVDKHILEDLVEAILLGDAQSALNVFRELCNTS-NPVIILEGMLQIIYEICY 290 (491)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999976 788999999999887754
No 9
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.1e-41 Score=318.18 Aligned_cols=273 Identities=22% Similarity=0.330 Sum_probs=248.9
Q ss_pred hhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-----------------
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL----------------- 111 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~----------------- 111 (345)
.|.+||||.+|++++||+++++.|.+++..++.+| +||+||+|||||++|+++++.++|...
T Consensus 2 al~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~ 81 (584)
T PRK14952 2 ALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAP 81 (584)
T ss_pred cHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhc
Confidence 47799999999999999999999999999999999 599999999999999999999987431
Q ss_pred ---CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEE
Q 019145 112 ---YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (345)
Q Consensus 112 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~i 188 (345)
...+++++++....+++.+++........+ ..++++|+||||+|.++.+.++.|++++|+++.++.|
T Consensus 82 ~~~~~~dvieidaas~~gvd~iRel~~~~~~~P----------~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~f 151 (584)
T PRK14952 82 NGPGSIDVVELDAASHGGVDDTRELRDRAFYAP----------AQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIF 151 (584)
T ss_pred ccCCCceEEEeccccccCHHHHHHHHHHHHhhh----------hcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEE
Confidence 235677888877678888887765544332 2246789999999999999999999999999999999
Q ss_pred EEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh-CCC
Q 019145 189 FFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSS 267 (345)
Q Consensus 189 i~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~-~~~ 267 (345)
|++|+...++.+++++||..+.|.+++.+++.+++.++++++|+.++++++..+++.++||+|.++++|++++.+. ++.
T Consensus 152 IL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~~~~~~~ 231 (584)
T PRK14952 152 IFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTH 231 (584)
T ss_pred EEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998876 567
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhh
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQH 332 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~ 332 (345)
||.++|.++++......++++++++..++...++..+.+++..|.++..++..|.+++|+++.-+
T Consensus 232 It~~~v~~llg~~~~~~i~~lv~al~~~d~~~al~~l~~l~~~g~d~~~~l~~L~~~~RdLll~k 296 (584)
T PRK14952 232 VTYQRALGLLGATDVALIDDAVDALAADDAAALFGAIESVIDAGHDPRRFATDLLERFRDLIVLQ 296 (584)
T ss_pred cCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999997543
No 10
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.6e-41 Score=318.01 Aligned_cols=274 Identities=23% Similarity=0.350 Sum_probs=250.8
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcE-EEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~l-ll~G~~G~GKT~la~~la~~l~~~~~-------------- 111 (345)
+++.|++||||.+|++++||++++..|.+++..++.+|. ||+||+|+|||++++.+++.++|...
T Consensus 2 sy~vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C 81 (618)
T PRK14951 2 SYLVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC 81 (618)
T ss_pred chHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc
Confidence 578899999999999999999999999999999999885 99999999999999999999987421
Q ss_pred ---------CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc
Q 019145 112 ---------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (345)
Q Consensus 112 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~ 182 (345)
...+++++++....+++.+++.++.....+ ..++++|+||||+|+++...++.|++.+|++
T Consensus 82 ~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p----------~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEP 151 (618)
T PRK14951 82 QACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKP----------VQGRFKVFMIDEVHMLTNTAFNAMLKTLEEP 151 (618)
T ss_pred HHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCc----------ccCCceEEEEEChhhCCHHHHHHHHHhcccC
Confidence 223677888877778888888876643322 2346889999999999999999999999999
Q ss_pred CCceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019145 183 SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (345)
Q Consensus 183 ~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~ 262 (345)
+.++.||++|+.+.++...+++||..++|.+++.+++..++++++.++|+.++++++..|++.++||+|.+++.++++..
T Consensus 152 P~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ia 231 (618)
T PRK14951 152 PEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIA 231 (618)
T ss_pred CCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999888999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HhCCCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 263 LFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 263 ~~~~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
+.++.||.++|.++++......+|++++++..++...++..+.+|...|+++..++..|...++++++
T Consensus 232 ~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~~d~~~al~~l~~l~~~G~~~~~il~~l~~~~~~~~~ 299 (618)
T PRK14951 232 FGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQGDGRTVVETADELRLNGLSAASTLEEMAAVLQRMAV 299 (618)
T ss_pred hcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 77778999999999999999999999999999999999999999999999999999999999998874
No 11
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5.8e-41 Score=302.08 Aligned_cols=275 Identities=23% Similarity=0.306 Sum_probs=244.0
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC-------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------- 112 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~~------------- 112 (345)
++++|++||||.+|++++||+++++.+.+.+..++.+| ++|+||+|+|||++|+++++.+.|....
T Consensus 2 ~~~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~ 81 (363)
T PRK14961 2 NYQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKE 81 (363)
T ss_pred CcHHHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 56799999999999999999999999999999998888 4999999999999999999999764321
Q ss_pred -----CCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceE
Q 019145 113 -----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (345)
Q Consensus 113 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ 187 (345)
..+++++++......+.++..+...... +..++++++||||+|.++...++.|++.+++++.++.
T Consensus 82 ~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~----------p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~ 151 (363)
T PRK14961 82 IEKGLCLDLIEIDAASRTKVEEMREILDNIYYS----------PSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIK 151 (363)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhcC----------cccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 1245556655445556666555543321 1234678999999999999999999999999999999
Q ss_pred EEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Q 019145 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~ 267 (345)
+|++|+...++.+++.+||..++|.|++.+++.+++..+++.+|+.+++++++.+++.++||+|.+++.+++++.+..+.
T Consensus 152 fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~~~~~~~ 231 (363)
T PRK14961 152 FILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGN 231 (363)
T ss_pred EEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 99999888899999999999999999999999999999999999999999999999999999999999999998876678
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQ 331 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~ 331 (345)
||.++|.++++...+..+|++++++..++...++..+.++...|++|..++..|...++.++.-
T Consensus 232 It~~~v~~~l~~~~~~~i~~l~~ai~~~~~~~~~~~~~~l~~~g~~~~~il~~l~~~~~d~l~~ 295 (363)
T PRK14961 232 INIKNVTDMLGLLNEKQSFLLTDALLKKDSKKTMLLLNKISSIGIEWENILIEMLRFLHHISMS 295 (363)
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988753
No 12
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3e-41 Score=311.93 Aligned_cols=273 Identities=23% Similarity=0.349 Sum_probs=248.1
Q ss_pred cchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC---------------
Q 019145 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL--------------- 111 (345)
Q Consensus 48 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~--------------- 111 (345)
+++|++||||.+|++++||+++.+.|.+++..++.++ +||+||+|+|||++|+++|+.++|...
T Consensus 2 Y~~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I 81 (702)
T PRK14960 2 YQVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAV 81 (702)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHH
Confidence 5689999999999999999999999999999998887 599999999999999999999987431
Q ss_pred ---CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEE
Q 019145 112 ---YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (345)
Q Consensus 112 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~i 188 (345)
...+++++++.+..+.+.+++.+......+ ..++++|+||||+|+++...++.|++.+++++.++.|
T Consensus 82 ~~g~hpDviEIDAAs~~~VddIReli~~~~y~P----------~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~F 151 (702)
T PRK14960 82 NEGRFIDLIEIDAASRTKVEDTRELLDNVPYAP----------TQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKF 151 (702)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhhhh----------hcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEE
Confidence 233678888887778888888776654332 1246789999999999999999999999999999999
Q ss_pred EEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCC
Q 019145 189 FFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSI 268 (345)
Q Consensus 189 i~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~i 268 (345)
|++|+.+.++...+++||..+.|.+++.+++.+++.++++++|+.++++++..|++.++||+|.+++.++++..+.++.|
T Consensus 152 ILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIayg~g~I 231 (702)
T PRK14960 152 LFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAV 231 (702)
T ss_pred EEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998887767789
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 269 TSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 269 t~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
|.++|.++++......+|++++++..++...++..+.++...|.++..++..|...++.++.
T Consensus 232 T~edV~~lLG~~d~e~IfdLldAI~k~d~~~al~~L~el~~~g~d~~~~l~~Ll~~lrdlll 293 (702)
T PRK14960 232 HHQDVKEMLGLIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQLISTLHELAL 293 (702)
T ss_pred CHHHHHHHhccCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998764
No 13
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5.9e-41 Score=307.97 Aligned_cols=270 Identities=29% Similarity=0.437 Sum_probs=242.5
Q ss_pred hhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-----------------
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL----------------- 111 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~----------------- 111 (345)
.|.++|||.+|++++||+++...|...+..+..++ ++|+|||||||||+|+++++.+.|...
T Consensus 3 ~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~ 82 (472)
T PRK14962 3 ALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDE 82 (472)
T ss_pred hhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhc
Confidence 58999999999999999999999999999999877 799999999999999999999976432
Q ss_pred -CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEE
Q 019145 112 -YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFF 190 (345)
Q Consensus 112 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~ 190 (345)
....++++++....+.+.++.........+ ..+++++|||||+|.++...++.|++.+++++..+.+|+
T Consensus 83 g~~~dv~el~aa~~~gid~iR~i~~~~~~~p----------~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Il 152 (472)
T PRK14962 83 GTFMDVIELDAASNRGIDEIRKIRDAVGYRP----------MEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVL 152 (472)
T ss_pred CCCCccEEEeCcccCCHHHHHHHHHHHhhCh----------hcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 123678888876677777776554433221 224678999999999999999999999999988999998
Q ss_pred ecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCH
Q 019145 191 ICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITS 270 (345)
Q Consensus 191 ~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~ 270 (345)
+++.+.++.+++.+||..+.|.+++.+++..+++.+++.+|+.++++++..|++.++||+|.+++.|+.++.+.++.||.
T Consensus 153 attn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~ 232 (472)
T PRK14962 153 ATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITL 232 (472)
T ss_pred EeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCH
Confidence 88878899999999999999999999999999999999999999999999999999999999999999988877767999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 019145 271 KDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLM 329 (345)
Q Consensus 271 ~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~ 329 (345)
++|.++++....+.++++++++.+++.++|+.++.+|+..|++|..|++.|.......+
T Consensus 233 e~V~~~l~~~~~~~i~~li~si~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi 291 (472)
T PRK14962 233 ETVHEALGLIPIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDL 291 (472)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999888665
No 14
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3.5e-41 Score=318.18 Aligned_cols=276 Identities=25% Similarity=0.402 Sum_probs=252.7
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC-------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------- 112 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~~------------- 112 (345)
+++.|++||||.+|++++||+++++.|.+++..+..+| +||+||+|+|||++++++++.++|....
T Consensus 2 sy~~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~ 81 (576)
T PRK14965 2 SYLVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVE 81 (576)
T ss_pred CcHHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHH
Confidence 56789999999999999999999999999999999888 5999999999999999999999876432
Q ss_pred -----CCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceE
Q 019145 113 -----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (345)
Q Consensus 113 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ 187 (345)
..+++++++....+.+.+++.+......+ ..++++|+||||+|.++...++.|++++|+++.++.
T Consensus 82 i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p----------~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~ 151 (576)
T PRK14965 82 ITEGRSVDVFEIDGASNTGVDDIRELRENVKYLP----------SRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVK 151 (576)
T ss_pred HhcCCCCCeeeeeccCccCHHHHHHHHHHHHhcc----------ccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeE
Confidence 44677888777677888877766654322 235789999999999999999999999999999999
Q ss_pred EEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Q 019145 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~ 267 (345)
||++|+.+.++++++++||..+.|.+++.+++..++..+++++|+.++++++..+++.++||+|.+++.|+++..+.++.
T Consensus 152 fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqliay~g~~ 231 (576)
T PRK14965 152 FIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDA 231 (576)
T ss_pred EEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhh
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQH 332 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~ 332 (345)
||.++|.++++....+.++++++++..++...++..+.++...|.++..++..|.++||+++.-+
T Consensus 232 It~edV~~llG~~~~~~l~~ll~al~~~d~~~al~~l~~l~~~G~~~~~~l~~Ll~~~RdLl~~k 296 (576)
T PRK14965 232 VGDDDVAELLGVVDRRLLLDISAAVFGRDTRALLEIVERVDEFGYNMRQFCQELIDHLRNLVVLR 296 (576)
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999997433
No 15
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=6.1e-41 Score=310.09 Aligned_cols=274 Identities=24% Similarity=0.420 Sum_probs=248.4
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC-------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------- 112 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~~------------- 112 (345)
+..+|+++|||.+|++++||+.++..|.+++..++.++ +||+||+|+|||++|+++++.+.|....
T Consensus 2 ~~~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~ 81 (605)
T PRK05896 2 SEITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCES 81 (605)
T ss_pred cchhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 45789999999999999999999999999999988877 7899999999999999999999875422
Q ss_pred -----CCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceE
Q 019145 113 -----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (345)
Q Consensus 113 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ 187 (345)
..+++++++....+.+.++..+..+...+. .++++|+||||+|.++...++.|++++++++..+.
T Consensus 82 i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~----------~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tv 151 (605)
T PRK05896 82 INTNQSVDIVELDAASNNGVDEIRNIIDNINYLPT----------TFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVV 151 (605)
T ss_pred HHcCCCCceEEeccccccCHHHHHHHHHHHHhchh----------hCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEE
Confidence 235677777665677778877766544322 24578999999999999999999999999999999
Q ss_pred EEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Q 019145 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~ 267 (345)
+|++|+.+.++.+++++||..+.|.+++.+++..++..++.++|+.++++++..+++.++||+|.+++.++.++.+.+..
T Consensus 152 fIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y~~~~ 231 (605)
T PRK05896 152 FIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSE 231 (605)
T ss_pred EEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
|+.++|.++++......+|.+++++..++...++.++.+|...|++|..++..|...+|.++.
T Consensus 232 It~e~V~ellg~~~~~~Vf~Ll~AI~~kd~~~al~~l~~Ll~~ge~~~~il~~L~~~~RDlL~ 294 (605)
T PRK05896 232 IDIEDINKTFGLVDNNKKINLIELIQKNDIEELRNLINELESKGINFEAFCRDLINLLIDLLV 294 (605)
T ss_pred CCHHHHHHHhccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999889899999999999999999999999999999999999999999998874
No 16
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=7.7e-41 Score=317.76 Aligned_cols=275 Identities=24% Similarity=0.360 Sum_probs=247.7
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcE-EEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~l-ll~G~~G~GKT~la~~la~~l~~~~~-------------- 111 (345)
++++|++||||.+|++++||++++..|++++..++.+|. ||+||+|||||++|+++++.++|...
T Consensus 2 sY~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~ 81 (944)
T PRK14949 2 SYQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVE 81 (944)
T ss_pred CchhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHH
Confidence 578999999999999999999999999999999999996 89999999999999999999988532
Q ss_pred ----CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceE
Q 019145 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (345)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ 187 (345)
....++++++.+..+.+.++.++..+...+ ..++++|+||||+|+|+...++.|++.||+++.+++
T Consensus 82 i~~g~~~DviEidAas~~kVDdIReLie~v~~~P----------~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vr 151 (944)
T PRK14949 82 IAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRP----------SRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVK 151 (944)
T ss_pred HhcCCCceEEEeccccccCHHHHHHHHHHHHhhh----------hcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeE
Confidence 122356677665567777887776654332 124678999999999999999999999999999999
Q ss_pred EEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Q 019145 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~ 267 (345)
||++|+...++.+.|++||..+.|.+++.+++..+|.+++..+++.++++++..|++.++|++|.+++.++.+..+.++.
T Consensus 152 FILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQala~~~~~ 231 (944)
T PRK14949 152 FLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGGGQ 231 (944)
T ss_pred EEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877666678
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQ 331 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~ 331 (345)
++.+.|.++++......+..+++++.+++...++..+..|+..|.++..|++.|...+|.+++-
T Consensus 232 It~~~V~~llG~iD~~~V~~llksI~~~D~~aaL~~l~~Ll~~G~D~~~ILr~Ll~~lRDill~ 295 (944)
T PRK14949 232 VMLTQVQTMLGSIDEQHVIALLKALTDADIGVLMQTCAQVLAFGADAQEVLRSLLELLHQITLT 295 (944)
T ss_pred ccHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888899999999999999999999999999999999999999999988753
No 17
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=6.1e-41 Score=312.79 Aligned_cols=275 Identities=24% Similarity=0.361 Sum_probs=249.5
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC-------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------- 112 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~~------------- 112 (345)
++++|.+||||.+|++++||+++++.|.+++..++.++ +||+||+|+|||++|+++++.++|....
T Consensus 2 sy~vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~ 81 (709)
T PRK08691 2 AYQVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQ 81 (709)
T ss_pred cchhHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHH
Confidence 57789999999999999999999999999999998887 6999999999999999999999875321
Q ss_pred -----CCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceE
Q 019145 113 -----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (345)
Q Consensus 113 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ 187 (345)
..+++++++....+.+.+++.+......+ ..++++|+||||+|.++...++.|++.+++++.++.
T Consensus 82 i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P----------~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~ 151 (709)
T PRK08691 82 IDAGRYVDLLEIDAASNTGIDNIREVLENAQYAP----------TAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (709)
T ss_pred HhccCccceEEEeccccCCHHHHHHHHHHHHhhh----------hhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcE
Confidence 23567778777778888888776543332 124678999999999999999999999999999999
Q ss_pred EEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Q 019145 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~ 267 (345)
||++|+...++...+++||..+.|.+++.+++..+|.++++++|+.++++++..|++.++||+|.+++.|+++..+.++.
T Consensus 152 fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~g~g~ 231 (709)
T PRK08691 152 FILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGK 231 (709)
T ss_pred EEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988776677
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQ 331 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~ 331 (345)
|+.++|..+++......+|++++++..++...++..+.+|...|.++..++..|...++++++-
T Consensus 232 It~e~V~~lLG~~d~~~If~LldAL~~~d~~~al~~l~~L~~~G~d~~~~l~~L~~~l~~l~~~ 295 (709)
T PRK08691 232 VAENDVRQMIGAVDKQYLYELLTGIINQDGAALLAKAQEMAACAVGFDNALGELAILLQQLALI 295 (709)
T ss_pred cCHHHHHHHHcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999998653
No 18
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.3e-40 Score=312.93 Aligned_cols=275 Identities=27% Similarity=0.427 Sum_probs=251.8
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCC---------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPE--------------- 110 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~--------------- 110 (345)
+++.|.++|||.+|++++||+++++.|.+++..++.+| +||+||+|||||++|+.+++.++|..
T Consensus 2 ~y~al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~ 81 (559)
T PRK05563 2 MYQALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKA 81 (559)
T ss_pred CcHHHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHH
Confidence 46789999999999999999999999999999998888 58999999999999999999998754
Q ss_pred ---CCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceE
Q 019145 111 ---LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (345)
Q Consensus 111 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ 187 (345)
+...+++++++....+.+.++.........+ ..++++|+||||+|.++...++.|++.+++++.++.
T Consensus 82 i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p----------~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~i 151 (559)
T PRK05563 82 ITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAP----------SEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVI 151 (559)
T ss_pred HhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCc----------ccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeE
Confidence 2345788888877777887877766644322 235789999999999999999999999999999999
Q ss_pred EEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Q 019145 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~ 267 (345)
+|++|+.+.++++++++||..+.|.+++.+++..++..+++++|+.++++++..+++.++|++|.+++.|+++..+.++.
T Consensus 152 fIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ldq~~~~~~~~ 231 (559)
T PRK05563 152 FILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGK 231 (559)
T ss_pred EEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887778
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQ 331 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~ 331 (345)
||.++|.++++....+.++++++++..++...++..+..+...|.++..++..|.+++|.++.-
T Consensus 232 It~~~V~~vlg~~~~~~i~~l~~al~~~d~~~al~~l~~l~~~g~d~~~~l~~L~~~~Rdll~~ 295 (559)
T PRK05563 232 VTYEDALEVTGSVSQEALDDLVDAIVEGDVAKALKILEELLDEGKDPNRFIEDLIYYLRDLLLV 295 (559)
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998643
No 19
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=2.2e-40 Score=304.03 Aligned_cols=275 Identities=29% Similarity=0.427 Sum_probs=247.3
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~-------------- 111 (345)
.+++|+++|||.+|++++||+.++..|.+++..+..++ +||+||+|+|||++|+.+++.+.|...
T Consensus 3 ~~~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~ 82 (451)
T PRK06305 3 SYQVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCK 82 (451)
T ss_pred chHHHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHH
Confidence 57889999999999999999999999999999998877 699999999999999999999987531
Q ss_pred -----CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCce
Q 019145 112 -----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVT 186 (345)
Q Consensus 112 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~ 186 (345)
...+++++++....+.+.++.........+ ..++++++||||+|.++.+.++.|++++++++..+
T Consensus 83 ~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~----------~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~ 152 (451)
T PRK06305 83 EISSGTSLDVLEIDGASHRGIEDIRQINETVLFTP----------SKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHV 152 (451)
T ss_pred HHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhh----------hcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCc
Confidence 234677777665566777766554433222 12467899999999999999999999999999999
Q ss_pred EEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCC
Q 019145 187 RFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266 (345)
Q Consensus 187 ~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~ 266 (345)
.+|++++...++.+++++||..+.|.+++.+++..|+..+++++|+.++++++..|++.++||+|.+++.+++++.+.++
T Consensus 153 ~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~~~~~ 232 (451)
T PRK06305 153 KFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPK 232 (451)
T ss_pred eEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 99999998999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred CCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 019145 267 SITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQ 331 (345)
Q Consensus 267 ~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~ 331 (345)
.|+.++|.++++...++++|++++++..++...++..+..|...|++|..++..|.++||.++.-
T Consensus 233 ~It~~~V~~l~~~~~~~~vf~L~~ai~~~d~~~al~~l~~L~~~g~~~~~iL~~L~~~fR~ll~v 297 (451)
T PRK06305 233 SLDPDSVAKALGLLSQDSLYTLDEAITTQNYAQALEPVTDAMNSGVAPAHFLHDLTLFFRNILLK 297 (451)
T ss_pred CcCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999998743
No 20
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.7e-40 Score=306.36 Aligned_cols=276 Identities=30% Similarity=0.431 Sum_probs=247.5
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcE-EEeCCCCCCHHHHHHHHHHHhcCCCCC-------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFGPELY------------- 112 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~l-ll~G~~G~GKT~la~~la~~l~~~~~~------------- 112 (345)
++.||+++|||.+|++++||++++..|.+++..+..+|. ||+||+|+|||++|+.+++.++|....
T Consensus 2 ~y~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~ 81 (486)
T PRK14953 2 MYIPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVE 81 (486)
T ss_pred CchHHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHH
Confidence 567999999999999999999999999999999988885 899999999999999999999863211
Q ss_pred -----CCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceE
Q 019145 113 -----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (345)
Q Consensus 113 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ 187 (345)
..+++++++....+.+.++.........+ ..++++|+||||+|.++.+.++.|++++++++..+.
T Consensus 82 i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P----------~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 82 IDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTP----------IKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred HhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCc----------ccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 12466676666667777766555443322 235778999999999999999999999999999999
Q ss_pred EEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Q 019145 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~ 267 (345)
+|++++...++.+++.+||..+.|.+++.+++..|+..+++.+|+.+++++++.+++.++||+|.+++.|++++.+.++.
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ldkl~~~~~~~ 231 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGK 231 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 99999888899999999999999999999999999999999999999999999999999999999999999998887778
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhh
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQH 332 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~ 332 (345)
||.++|.++++......+|++++++..++...++.++..|...|+++..+++.|.+++++++.-+
T Consensus 232 It~~~V~~~lg~~~~~~vf~Li~ai~~~d~~~al~~l~~L~~~g~~~~~iL~~L~~~~rdll~~k 296 (486)
T PRK14953 232 VTIKVVEEFLGIVSQESVRKFLNLLLESDVDEAIKFLRTLEEKGYNLNKFWKQLEEEIRNILLNK 296 (486)
T ss_pred cCHHHHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999987543
No 21
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=7.4e-41 Score=308.64 Aligned_cols=274 Identities=24% Similarity=0.342 Sum_probs=249.3
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcE-EEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~l-ll~G~~G~GKT~la~~la~~l~~~~~-------------- 111 (345)
++++|.+||||.+|++++||+++++.|.+++..++.+|. ||+||+|+|||++++.+++.++|...
T Consensus 2 sy~vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C 81 (700)
T PRK12323 2 SYQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQC 81 (700)
T ss_pred cchhHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCccc
Confidence 578999999999999999999999999999999999984 99999999999999999999988321
Q ss_pred ---------CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc
Q 019145 112 ---------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (345)
Q Consensus 112 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~ 182 (345)
...+++++++.+..+++.+++.++...... ..++++|+||||+|+|+...+|.|++.||++
T Consensus 82 ~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P----------~~gr~KViIIDEah~Ls~~AaNALLKTLEEP 151 (700)
T PRK12323 82 RACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAP----------TAGRFKVYMIDEVHMLTNHAFNAMLKTLEEP 151 (700)
T ss_pred HHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhch----------hcCCceEEEEEChHhcCHHHHHHHHHhhccC
Confidence 123678888887788888888877654332 2246789999999999999999999999999
Q ss_pred CCceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019145 183 SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (345)
Q Consensus 183 ~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~ 262 (345)
+.++.||++|+...++.++|+|||..+.|.+++.+++.+++++++..+|+.++++++..|++.++|++|.+++.++.+..
T Consensus 152 P~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQaia 231 (700)
T PRK12323 152 PEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIA 231 (700)
T ss_pred CCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred HhCCCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 263 LFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 263 ~~~~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
+.++.|+.++|.++++......++.+++.+..++...++..+..+...|.++..++..|...++++.+
T Consensus 232 ~~~~~It~~~V~~~LG~~d~~~i~~Ll~aL~~~d~~~~l~l~~~l~~~G~d~~~~L~dLl~~l~~l~l 299 (700)
T PRK12323 232 YSAGNVSEEAVRGMLGAIDQSYLVRLLDALAAEDGAALLAIADEMAGRSLSFAGALQDLASLLQKIAL 299 (700)
T ss_pred hccCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 77778999999999999999999999999999999999999999999999999999999999888754
No 22
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.5e-40 Score=312.15 Aligned_cols=275 Identities=26% Similarity=0.410 Sum_probs=251.0
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-------------
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------- 111 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~------------- 111 (345)
..+++|++||||.+|++++||+.+++.|.+++..++.++ +||+||+|+|||++|+.+++.++|...
T Consensus 9 ~~y~~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~ 88 (598)
T PRK09111 9 TPYRVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV 88 (598)
T ss_pred ccchhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc
Confidence 567899999999999999999999999999999999887 899999999999999999999987532
Q ss_pred ----------CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhh
Q 019145 112 ----------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMET 181 (345)
Q Consensus 112 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~ 181 (345)
.+.+++++++....+++.+++.+......+ ..++++|+||||+|.++...++.|++++|+
T Consensus 89 c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P----------~~a~~KVvIIDEad~Ls~~a~naLLKtLEe 158 (598)
T PRK09111 89 GEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRP----------VSARYKVYIIDEVHMLSTAAFNALLKTLEE 158 (598)
T ss_pred cHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhch----------hcCCcEEEEEEChHhCCHHHHHHHHHHHHh
Confidence 123567777776678888888776654332 235788999999999999999999999999
Q ss_pred cCCceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019145 182 YSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261 (345)
Q Consensus 182 ~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~ 261 (345)
++.++.||++++...++.+.+++||..+.|.+++.+++..|+.++++++|+.++++++..|++.++|++|.+++.++++.
T Consensus 159 Pp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldkli 238 (598)
T PRK09111 159 PPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAI 238 (598)
T ss_pred CCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999988899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHhCCCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 262 RLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 262 ~~~~~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
.+..+.||.++|.++++......+|++++++..++...++..+..++..|++|..+++.|.++++.++.
T Consensus 239 ~~g~g~It~e~V~~llg~~~~~~if~L~~ai~~gd~~~Al~~l~~l~~~G~~p~~il~~L~~~~r~L~~ 307 (598)
T PRK09111 239 AHGAGEVTAEAVRDMLGLADRARVIDLFEALMRGDVAAALAEFRAQYDAGADPVVVLTDLAEFTHLVTR 307 (598)
T ss_pred hhcCCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 776678999999999999999999999999999999999999999999999999999999999998864
No 23
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.2e-40 Score=311.41 Aligned_cols=274 Identities=24% Similarity=0.369 Sum_probs=248.5
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~-------------- 111 (345)
+++.++++|||.+|++++||+.++..|++++..++.+| +||+||+|||||++|+.+++.++|...
T Consensus 2 ~~~~l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~C 81 (620)
T PRK14954 2 SYQVIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPC 81 (620)
T ss_pred CcHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCC
Confidence 46678999999999999999999999999999999888 799999999999999999999988431
Q ss_pred ------------CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHH
Q 019145 112 ------------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTM 179 (345)
Q Consensus 112 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~l 179 (345)
.+.++.++++....+.+.+++....+...+ ..++++|+||||+|.++...++.|++++
T Consensus 82 g~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P----------~~~~~KVvIIdEad~Lt~~a~naLLK~L 151 (620)
T PRK14954 82 GECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGP----------QKGRYRVYIIDEVHMLSTAAFNAFLKTL 151 (620)
T ss_pred ccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhh----------hcCCCEEEEEeChhhcCHHHHHHHHHHH
Confidence 234666777655566778877766654332 2357789999999999999999999999
Q ss_pred hhcCCceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 019145 180 ETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259 (345)
Q Consensus 180 e~~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~ 259 (345)
++++..+.+|++++...++.+++.+||..++|.+++.+++..|+.++++.+|+.+++++++.|++.++||+|.+++++++
T Consensus 152 EePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLeK 231 (620)
T PRK14954 152 EEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQ 231 (620)
T ss_pred hCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-----CCCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 260 AARLF-----GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 260 ~~~~~-----~~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
+..+. ++.||.++|.++++...++.+|++++++..++...++..+..|...|++|..|+..|.++||+++.
T Consensus 232 L~~y~~~~~~~~~It~~~V~~lv~~~~e~~iF~L~dai~~~d~~~al~~l~~Ll~~ge~p~~iL~lL~~~fRdLL~ 307 (620)
T PRK14954 232 VIAFSVGSEAEKVIAYQGVAELLNYIDDEQFFDVTDAIAENDAVKMLEVARFVIDNGYDEQDFLEKLIEHFRNFLV 307 (620)
T ss_pred HHHhccccccCCccCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 99887 467999999999999999999999999999999999999999999999999999999999999864
No 24
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3e-40 Score=305.63 Aligned_cols=270 Identities=28% Similarity=0.380 Sum_probs=243.3
Q ss_pred hhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcE-EEeCCCCCCHHHHHHHHHHHhcCCC-----------------CC
Q 019145 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFGPE-----------------LY 112 (345)
Q Consensus 51 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~l-ll~G~~G~GKT~la~~la~~l~~~~-----------------~~ 112 (345)
+.+||||.+|++++||++++..|..++..+..+|. ||+||||||||++|+++++.+.|.+ ..
T Consensus 4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~ 83 (504)
T PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGA 83 (504)
T ss_pred HHHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCC
Confidence 45999999999999999999999999999998886 9999999999999999999997643 22
Q ss_pred CCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEec
Q 019145 113 KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~ 192 (345)
..+++++++.+..+.+.+++........+ ..+++++|||||++.++...++.|++.+++++..+.+|+++
T Consensus 84 h~dv~el~~~~~~~vd~iR~l~~~~~~~p----------~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t 153 (504)
T PRK14963 84 HPDVLEIDAASNNSVEDVRDLREKVLLAP----------LRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILAT 153 (504)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhcc----------ccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEc
Confidence 34678888876677777777654443321 22467899999999999999999999999998899999999
Q ss_pred CcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHH
Q 019145 193 NYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKD 272 (345)
Q Consensus 193 n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~ 272 (345)
+.+.++.+.+.+||..+.|.+++.+++..++.++++++|+.++++++..|++.++||+|.+++.|+++..+ ++.||.++
T Consensus 154 ~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~-~~~It~~~ 232 (504)
T PRK14963 154 TEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLAL-GTPVTRKQ 232 (504)
T ss_pred CChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCHHH
Confidence 98899999999999999999999999999999999999999999999999999999999999999998765 66799999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 019145 273 LISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQ 331 (345)
Q Consensus 273 v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~ 331 (345)
|.++++....+++|++++++..++...|+..+.+|+..|++|..|++.|.+++++++..
T Consensus 233 V~~~l~~~~~~~if~Li~al~~~d~~~Al~~l~~Ll~~G~~~~~Il~~L~~~~r~ll~~ 291 (504)
T PRK14963 233 VEEALGLPPQERLRGIAAALAQGDAAEALSGAAQLYRDGFAARTLVEGLLEAFRAALYA 291 (504)
T ss_pred HHHHHCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999977653
No 25
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=2.7e-40 Score=319.77 Aligned_cols=271 Identities=25% Similarity=0.366 Sum_probs=246.4
Q ss_pred hhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-----------------
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL----------------- 111 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~----------------- 111 (345)
.|.+||||.+|++++||+++++.|.+++..++.+| +||+||+|||||++++.|++.++|...
T Consensus 4 ~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~ 83 (824)
T PRK07764 4 ALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAP 83 (824)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHc
Confidence 47899999999999999999999999999999988 699999999999999999999987532
Q ss_pred ---CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEE
Q 019145 112 ---YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (345)
Q Consensus 112 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~i 188 (345)
...+++++++....+++.++++........ ..++++|+||||+|+|+...++.|+++||+++.++.|
T Consensus 84 g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p----------~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~f 153 (824)
T PRK07764 84 GGPGSLDVTEIDAASHGGVDDARELRERAFFAP----------AESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKF 153 (824)
T ss_pred CCCCCCcEEEecccccCCHHHHHHHHHHHHhch----------hcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 235677888766677888887665543222 2246889999999999999999999999999999999
Q ss_pred EEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhC-CC
Q 019145 189 FFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG-SS 267 (345)
Q Consensus 189 i~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~-~~ 267 (345)
||+++..+++.+.|++||..+.|.+++.+++.+||.++++.+|+.++++++..|++.++||+|.++++|++++.+.+ +.
T Consensus 154 Il~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLia~~~~~~ 233 (824)
T PRK07764 154 IFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAGAGPEG 233 (824)
T ss_pred EEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCC
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999987754 56
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
||.++|.++++......++++++++..++...++..+.+|+..|+++..++..|.++|+++++
T Consensus 234 IT~e~V~allg~~~~~~I~~lidAL~~~D~a~al~~l~~Li~~G~dp~~~L~~LL~~fRDLL~ 296 (824)
T PRK07764 234 VTYERAVALLGVTDSALIDEAVDALAAGDGAALFGTVDRVIEAGHDPRRFAEDLLERLRDLIV 296 (824)
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999864
No 26
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3.8e-40 Score=311.69 Aligned_cols=274 Identities=24% Similarity=0.373 Sum_probs=251.3
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCC---------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPE--------------- 110 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~--------------- 110 (345)
....|++||||.+|++++||+++...|..++..++.++ +||+||+|+|||++|+.+++.+.|..
T Consensus 3 ~~~~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~ 82 (614)
T PRK14971 3 NYIVSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCV 82 (614)
T ss_pred hhHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHH
Confidence 46689999999999999999999999999999999988 69999999999999999999998642
Q ss_pred ----CCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCce
Q 019145 111 ----LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVT 186 (345)
Q Consensus 111 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~ 186 (345)
..+.++.++++.+..+.+.++..+..+...+ ..++++|+||||+|.++...++.|++++|+++.++
T Consensus 83 ~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P----------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~t 152 (614)
T PRK14971 83 AFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPP----------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYA 152 (614)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHhhCc----------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCe
Confidence 2346788888876666777877776654332 23578999999999999999999999999999999
Q ss_pred EEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCC
Q 019145 187 RFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266 (345)
Q Consensus 187 ~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~ 266 (345)
.+|++++...++.+++++||.++.|.+++.+++..|+.+++.++|+.+++++++.|++.++||+|.+++++++++.+.++
T Consensus 153 ifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl~~y~~~ 232 (614)
T PRK14971 153 IFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGG 232 (614)
T ss_pred EEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred CCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 267 SITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 267 ~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
.|+.++|.+.+.....+++|++++++..++...++..+.+|+..|++|..|+..|.++||+++.
T Consensus 233 ~It~~~V~~~l~~~~~~~iF~L~dai~~~~~~~al~ll~~Ll~~g~~~~~iL~~L~~~fRdlL~ 296 (614)
T PRK14971 233 NITYKSVIENLNILDYDYYFRLTDALLAGKVSDSLLLFDEILNKGFDGSHFITGLASHFRDLLV 296 (614)
T ss_pred CccHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999976
No 27
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=5.8e-40 Score=307.13 Aligned_cols=274 Identities=24% Similarity=0.348 Sum_probs=248.1
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCC---------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPE--------------- 110 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~--------------- 110 (345)
++..+++||||.+|++++||++++..|..++..++.++ +||+||+|+|||++|+++++.+.|..
T Consensus 2 ~y~~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~ 81 (563)
T PRK06647 2 SYRGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKS 81 (563)
T ss_pred CcHHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHH
Confidence 46678999999999999999999999999999999888 69999999999999999999998752
Q ss_pred ---CCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceE
Q 019145 111 ---LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (345)
Q Consensus 111 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ 187 (345)
....+++++++....+.+.++.........+ ..++++++||||+|.++...++.|++.+++++..+.
T Consensus 82 i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p----------~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~v 151 (563)
T PRK06647 82 IDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPP----------ASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIV 151 (563)
T ss_pred HHcCCCCCeEEecCcccCCHHHHHHHHHHHHhch----------hcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEE
Confidence 1234677777665566677776655443322 235778999999999999999999999999999999
Q ss_pred EEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Q 019145 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~ 267 (345)
+|++++...++.+++++||..++|.+++.+++.+++...++.+|+.++++++..|++.++||+|.+++.+++++.+.++.
T Consensus 152 fI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdklis~~~~~ 231 (563)
T PRK06647 152 FIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSD 231 (563)
T ss_pred EEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCC
Confidence 99999888999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
||.++|.++++......++++++++..++...++..+..+...|+++..++..+.++||+++.
T Consensus 232 It~e~V~~llg~~~~~~if~LidaI~~~D~~~al~~l~~Ll~~G~d~~~iL~~Ll~~fRdLL~ 294 (563)
T PRK06647 232 ITLEQIRSKMGLTGDEFLEKLASSILNEDAKELLCVLDSVFLSGVSVEQFLLDCIEFFRELLF 294 (563)
T ss_pred CCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999874
No 28
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4.5e-40 Score=299.49 Aligned_cols=273 Identities=26% Similarity=0.384 Sum_probs=245.4
Q ss_pred cchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC---------------
Q 019145 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL--------------- 111 (345)
Q Consensus 48 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~--------------- 111 (345)
...++++|||.+|++++||+.++..|.+++..++.+| +||+||||+|||++|+++++.+.|...
T Consensus 3 ~~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~ 82 (397)
T PRK14955 3 YQVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCG 82 (397)
T ss_pred cHHHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCC
Confidence 4578999999999999999999999999999999888 799999999999999999999988431
Q ss_pred -----------CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHh
Q 019145 112 -----------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTME 180 (345)
Q Consensus 112 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le 180 (345)
.+.+++++++....+.+.+++....+...+ ..++++++||||+|.++...++.|+++++
T Consensus 83 ~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p----------~~~~~kvvIIdea~~l~~~~~~~LLk~LE 152 (397)
T PRK14955 83 ECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGP----------QKGRYRVYIIDEVHMLSIAAFNAFLKTLE 152 (397)
T ss_pred CCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhch----------hcCCeEEEEEeChhhCCHHHHHHHHHHHh
Confidence 123566677655566777777665554332 23577899999999999999999999999
Q ss_pred hcCCceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 019145 181 TYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260 (345)
Q Consensus 181 ~~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~ 260 (345)
++++.+.+|++++...++.+++.+||..++|.+++.+++..|+...++.+|+.+++++++.+++.++||+|.+++.++++
T Consensus 153 ep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl 232 (397)
T PRK14955 153 EPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQV 232 (397)
T ss_pred cCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh-----CCCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 261 ARLF-----GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 261 ~~~~-----~~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
..++ ++.||.++|.++++...++++|++++++..++...++.++..|...|++|..|+..|.++||+++.
T Consensus 233 ~~~~~~~~~~~~It~~~v~~~v~~~~~~~vf~l~~ai~~~~~~~al~~~~~l~~~~~~~~~iL~ll~~~~R~ll~ 307 (397)
T PRK14955 233 IAFSVESEGEGSIRYDKVAELLNYIDDEHFFAVTDAVADGDAVAMLDVAQFVIRNGYDEQDFLEKLIEHLRNFLV 307 (397)
T ss_pred HHhccccCCCCccCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 8875 347999999999999999999999999999999999999999999999999999999999999864
No 29
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=5.7e-40 Score=309.32 Aligned_cols=275 Identities=27% Similarity=0.433 Sum_probs=248.7
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcE-EEeCCCCCCHHHHHHHHHHHhcCCCC-------------
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFGPEL------------- 111 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~l-ll~G~~G~GKT~la~~la~~l~~~~~------------- 111 (345)
+++.+|+++|||.+|++++||+.+++.|..++..++.+|. ||+||+|+|||++|+++|+.+.|...
T Consensus 3 m~y~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~ 82 (725)
T PRK07133 3 MKYKALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIEN 82 (725)
T ss_pred cchhhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHh
Confidence 6788999999999999999999999999999999988885 89999999999999999999988542
Q ss_pred --CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEE
Q 019145 112 --YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189 (345)
Q Consensus 112 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii 189 (345)
.+..++++++....+.+.++..+......+ ..++++|+||||+|.++...++.|++.+|+++..+.+|
T Consensus 83 ~~~~~Dvieidaasn~~vd~IReLie~~~~~P----------~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifI 152 (725)
T PRK07133 83 VNNSLDIIEMDAASNNGVDEIRELIENVKNLP----------TQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFI 152 (725)
T ss_pred hcCCCcEEEEeccccCCHHHHHHHHHHHHhch----------hcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEE
Confidence 123456666655566777777776654432 23577899999999999999999999999999999999
Q ss_pred EecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCC
Q 019145 190 FICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269 (345)
Q Consensus 190 ~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it 269 (345)
++|+.+.++++++++||..+.|.+++.+++..++..++.++|+.++++++..+++.++|++|.+++.+++++.+.++.|+
T Consensus 153 LaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLekl~~y~~~~It 232 (725)
T PRK07133 153 LATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKIT 232 (725)
T ss_pred EEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887766799
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 270 SKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 270 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
.++|.++++....+.++.+++++..++...++..+..|...|++|..++..|...+|.+++
T Consensus 233 ~e~V~ellg~~~~e~If~Ll~aI~~kd~~~aL~~l~~L~~~ged~~~iL~~Ll~~~RDlLl 293 (725)
T PRK07133 233 LKNVEELFGLVSNENLINLLNLLYSKDIKEVLNILNQIKEQGIDPELLLISLINLVKEFII 293 (725)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998864
No 30
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=7.4e-40 Score=307.21 Aligned_cols=274 Identities=24% Similarity=0.345 Sum_probs=247.8
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcE-EEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~l-ll~G~~G~GKT~la~~la~~l~~~~~-------------- 111 (345)
++++|++||||.+|++++||++++..|.+.+..++.+|. ||+||+|+|||++|+.+++.++|...
T Consensus 2 sy~~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~ 81 (647)
T PRK07994 2 SYQVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCRE 81 (647)
T ss_pred CchhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHH
Confidence 578999999999999999999999999999999999885 89999999999999999999988532
Q ss_pred ----CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceE
Q 019145 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (345)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ 187 (345)
...+++++++....+.+.+++.+..+...+. .++++|+||||+|+|+...++.|++.+|+++.++.
T Consensus 82 i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~----------~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~ 151 (647)
T PRK07994 82 IEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPA----------RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK 151 (647)
T ss_pred HHcCCCCCceeecccccCCHHHHHHHHHHHHhhhh----------cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeE
Confidence 1225677777665677888877766543321 24678999999999999999999999999999999
Q ss_pred EEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Q 019145 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~ 267 (345)
||++|+.+.++.+.++|||..++|.+++.+++..+|.+++..+++.++++++..|+..++|++|.+++.++.+..+.++.
T Consensus 152 FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqaia~~~~~ 231 (647)
T PRK07994 152 FLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIASGNGQ 231 (647)
T ss_pred EEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877666677
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
|+.++|..+.+....+.++++++++..++...++..+..|...|.++..++..|...+++++.
T Consensus 232 it~~~v~~~lg~~d~~~~~~ll~al~~~d~~~~l~~~~~l~~~g~d~~~~L~~l~~~lrdil~ 294 (647)
T PRK07994 232 VTTDDVSAMLGTLDDDQALSLLEALVEGDGERVMALINQLAERGPDWEGLLVELLELLHRIAM 294 (647)
T ss_pred cCHHHHHHHHccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 999999999998888889999999999999999999999999999999999999999998864
No 31
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=9e-40 Score=300.92 Aligned_cols=272 Identities=28% Similarity=0.434 Sum_probs=244.4
Q ss_pred chhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcE-EEeCCCCCCHHHHHHHHHHHhcCCCC----------------
Q 019145 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFGPEL---------------- 111 (345)
Q Consensus 49 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~l-ll~G~~G~GKT~la~~la~~l~~~~~---------------- 111 (345)
++|++||||.+|++++||+++++.|..++..+..+|+ ||+||+|+|||++|+++++.+.|...
T Consensus 2 ~~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~ 81 (535)
T PRK08451 2 QALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSAL 81 (535)
T ss_pred ccHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 4699999999999999999999999999999999885 89999999999999999999987543
Q ss_pred --CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEE
Q 019145 112 --YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF 189 (345)
Q Consensus 112 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii 189 (345)
.+..++++++.+..+.+.+++.+...... +..++++|+||||+|.++.+.++.|++.+|+++.++.||
T Consensus 82 ~~~h~dv~eldaas~~gId~IRelie~~~~~----------P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FI 151 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYK----------PSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFI 151 (535)
T ss_pred hcCCCeEEEeccccccCHHHHHHHHHHHhhC----------cccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEE
Confidence 23467778777666788888877653322 123578899999999999999999999999999999999
Q ss_pred EecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCC
Q 019145 190 FICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT 269 (345)
Q Consensus 190 ~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it 269 (345)
++|+.+.++.+++++||..++|.+++.+++..++..+++.+|+.++++++..|++.++||+|.+++.|+++..++++.||
T Consensus 152 L~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai~~~~~~It 231 (535)
T PRK08451 152 LATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAIT 231 (535)
T ss_pred EEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCCCC
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999988877899
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhh
Q 019145 270 SKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQH 332 (345)
Q Consensus 270 ~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~ 332 (345)
.++|.++++......++.+++++..++...++..+..+ .|.++..++..|...++..++.+
T Consensus 232 ~~~V~~~lg~~~~~~I~~li~ai~~~d~~~a~~~l~~L--~g~~~~~~l~~l~~~l~~~~~~~ 292 (535)
T PRK08451 232 ESKVADMLGLLDPSKLEDFFQAILNQDKEKLFELLKEL--EDYEAEMVLDEMMLFLKEKFLSK 292 (535)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999 47888899988888888665433
No 32
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.3e-39 Score=301.61 Aligned_cols=273 Identities=23% Similarity=0.370 Sum_probs=244.3
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~-------------- 111 (345)
++++|++||||.+|++++||++++..|..++..++.++ +||+||+|+|||++|+.+++.++|...
T Consensus 2 ~y~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~ 81 (546)
T PRK14957 2 SYQALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVA 81 (546)
T ss_pred CchhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH
Confidence 57899999999999999999999999999999998888 689999999999999999999987422
Q ss_pred ----CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceE
Q 019145 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (345)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ 187 (345)
...+++++++....+.+.++..+..+...+ ..++++|+||||+|.++...++.|++++|+++..+.
T Consensus 82 i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p----------~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~ 151 (546)
T PRK14957 82 INNNSFIDLIEIDAASRTGVEETKEILDNIQYMP----------SQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVK 151 (546)
T ss_pred HhcCCCCceEEeecccccCHHHHHHHHHHHHhhh----------hcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCce
Confidence 123566677656667777777776654332 224678999999999999999999999999999999
Q ss_pred EEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Q 019145 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~ 267 (345)
+|++|+...++.+++++||..++|.+++.+++..++..+++++|+.++++++..|++.++||+|.+++.+++++.+.++.
T Consensus 152 fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i~~~~~~ 231 (546)
T PRK14957 152 FILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGE 231 (546)
T ss_pred EEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC
Confidence 99999989999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLM 329 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~ 329 (345)
|+.++|.++++....+.++++++++..++...++..+..+...|.+...++..|.+.+.+++
T Consensus 232 It~~~V~~~l~~~~~~~v~~ll~Al~~~d~~~~l~~~~~l~~~~~~~~~~l~~l~~~~~r~~ 293 (546)
T PRK14957 232 LKQAQIKQMLGIIDSEEVYSIINAIIDNDPKAILPAIKNLALTESSADAVLDRIAEIWFACC 293 (546)
T ss_pred CCHHHHHHHHccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 99999999999998889999999999999999999999999999999999999985555443
No 33
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.3e-39 Score=302.91 Aligned_cols=275 Identities=24% Similarity=0.350 Sum_probs=244.8
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~-------------- 111 (345)
+.++|++||||.+|++++||++++..|.+++..++..+ +||+||+|||||++|+.+++.++|...
T Consensus 2 s~~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~ 81 (624)
T PRK14959 2 SHASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRK 81 (624)
T ss_pred CcchHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHH
Confidence 56799999999999999999999999999999987555 789999999999999999999987521
Q ss_pred ----CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceE
Q 019145 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (345)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ 187 (345)
...+++++++....+++.++.+.+.+.... ..++++||||||+|.++...++.|++++|+++..+.
T Consensus 82 i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p----------~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~i 151 (624)
T PRK14959 82 VTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAP----------MEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVT 151 (624)
T ss_pred HhcCCCCceEEEecccccCHHHHHHHHHHHHhhh----------hcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEE
Confidence 234577787766667777776554443322 224678999999999999999999999999888999
Q ss_pred EEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Q 019145 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~ 267 (345)
+|++|+...++.+.+++||..++|.+++.+++..+|..+++.+++.++++++..|++.++||+|.+++.|++++...++.
T Consensus 152 fILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll~~g~~~ 231 (624)
T PRK14959 152 FVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESR 231 (624)
T ss_pred EEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999886544567
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQ 331 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~ 331 (345)
||.++|.++++....+.++++++++..++...++.++..|+..|+++..++..|...|++++.-
T Consensus 232 It~d~V~~~lg~~~~e~vfeLl~AL~~~D~~aal~~l~~Ll~~g~d~~~iL~~Ll~~~RdLLl~ 295 (624)
T PRK14959 232 LTIDGARGVLGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFML 295 (624)
T ss_pred cCHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999998753
No 34
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.5e-40 Score=300.70 Aligned_cols=273 Identities=31% Similarity=0.452 Sum_probs=254.9
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~-------------- 111 (345)
.++++..||||++|++++||+++...|.+.+..++..| .+|+||.|||||++|+.+|+.++|.+.
T Consensus 2 ~yq~L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~ 81 (515)
T COG2812 2 SYQVLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKE 81 (515)
T ss_pred chHHHHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHh
Confidence 45678999999999999999999999999999999988 599999999999999999999998642
Q ss_pred ----CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceE
Q 019145 112 ----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (345)
Q Consensus 112 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ 187 (345)
...+++++++....+++++++..+..... +..++++|+||||+|+|++..+++|++.+|++|.++.
T Consensus 82 I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~----------P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~ 151 (515)
T COG2812 82 INEGSLIDVIEIDAASNTGVDDIREIIEKVNYA----------PSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVK 151 (515)
T ss_pred hhcCCcccchhhhhhhccChHHHHHHHHHhccC----------CccccceEEEEecHHhhhHHHHHHHhcccccCccCeE
Confidence 23577888888888999999888875443 3346889999999999999999999999999999999
Q ss_pred EEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Q 019145 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~ 267 (345)
||++|+.+.+++..++|||+.+.|..++.+++...|..++.++++.++++++..+++.++|.+|+++..|+.+..+.++.
T Consensus 152 FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~~~ 231 (515)
T COG2812 152 FILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGEGE 231 (515)
T ss_pred EEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887778
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLM 329 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~ 329 (345)
||.+.|.++++......+..+++++..+|...++..++++.+.|.++..++..+..+++.++
T Consensus 232 It~~~v~~~lG~~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~G~~~~~~l~dl~~~~~~~l 293 (515)
T COG2812 232 ITLESVRDMLGLTDIEKLLSLLEAILKGDAKEALRLINELIEEGKDPEAFLEDLLNFLRDLL 293 (515)
T ss_pred ccHHHHHHHhCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998843
No 35
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=100.00 E-value=4e-39 Score=292.02 Aligned_cols=274 Identities=28% Similarity=0.424 Sum_probs=245.1
Q ss_pred cchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC---------------
Q 019145 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL--------------- 111 (345)
Q Consensus 48 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~--------------- 111 (345)
++||+++|+|.+|++++|+++.+..+..++..+..++ +||+||||+|||++++.+++.+.|...
T Consensus 1 ~~~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~ 80 (355)
T TIGR02397 1 YQVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEI 80 (355)
T ss_pred CccHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 3699999999999999999999999999999998887 699999999999999999999976532
Q ss_pred ---CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEE
Q 019145 112 ---YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRF 188 (345)
Q Consensus 112 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~i 188 (345)
...+++++++....+.+.++..+...... +..+++++|+|||++.++...++.|++.+++++..+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~l 150 (355)
T TIGR02397 81 NSGSSLDVIEIDAASNNGVDDIREILDNVKYA----------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVF 150 (355)
T ss_pred hcCCCCCEEEeeccccCCHHHHHHHHHHHhcC----------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeE
Confidence 13467777776555555666666554322 22356789999999999999999999999998889999
Q ss_pred EEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCC
Q 019145 189 FFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSI 268 (345)
Q Consensus 189 i~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~i 268 (345)
|++++...++.+++.+||..+.|.+++.+++..|+..+++++|+.++++++..+++.++||+|.+.+.+++++.+.++.|
T Consensus 151 Il~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~~~~~~~i 230 (355)
T TIGR02397 151 ILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGNI 230 (355)
T ss_pred EEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCC
Confidence 99998888899999999999999999999999999999999999999999999999999999999999999998887789
Q ss_pred CHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 019145 269 TSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQ 331 (345)
Q Consensus 269 t~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~ 331 (345)
|.++|+++++......++++++++..++...++..+..+...|++|..+++.|.+++++++.-
T Consensus 231 t~~~v~~~~~~~~~~~i~~l~~ai~~~~~~~a~~~~~~l~~~~~~~~~il~~l~~~~r~l~~~ 293 (355)
T TIGR02397 231 TYEDVNELLGLVDDEKLIELLEAILNKDTAEALKILDEILESGVDPEKFLEDLIEILRDLLLI 293 (355)
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998643
No 36
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.6e-39 Score=302.09 Aligned_cols=276 Identities=25% Similarity=0.366 Sum_probs=248.7
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC-------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------- 112 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~~------------- 112 (345)
++++|++||||.+|++++||+++++.|.+++..++.+| +||+||+|+|||++|+.+++.++|....
T Consensus 2 ~~~~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~ 81 (527)
T PRK14969 2 SYQVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLE 81 (527)
T ss_pred CcHHHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 57789999999999999999999999999999999888 5899999999999999999999875321
Q ss_pred -----CCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceE
Q 019145 113 -----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (345)
Q Consensus 113 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ 187 (345)
..+++++++....+.+.+++.+...... +..++++|+||||+|.++...++.|++.+|+++.++.
T Consensus 82 i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~----------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~ 151 (527)
T PRK14969 82 IDSGRFVDLIEVDAASNTQVDAMRELLDNAQYA----------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (527)
T ss_pred HhcCCCCceeEeeccccCCHHHHHHHHHHHhhC----------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEE
Confidence 2256677766666777787776654322 2235788999999999999999999999999999999
Q ss_pred EEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Q 019145 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~ 267 (345)
+|++|+.+.++.+.+++||..++|.+++.+++.+++.++++++|+.++++++..|++.++||+|.+++.++++..+.++.
T Consensus 152 fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai~~~~~~ 231 (527)
T PRK14969 152 FILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGT 231 (527)
T ss_pred EEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC
Confidence 99999988899989999999999999999999999999999999999999999999999999999999999998887788
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhh
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQH 332 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~ 332 (345)
|+.++|.++++....+.+|++++++..++...++..+.+|...|+++..++..|...+++++.-+
T Consensus 232 I~~~~v~~~~~~~~~~~i~~ll~al~~~~~~~~l~~~~~l~~~~~~~~~~l~~l~~~~rd~~~~~ 296 (527)
T PRK14969 232 VNESEVRAMLGAIDQDYLFALLEALLAQDGAALLAIADAMEERSLSFDAALQDLAALLHRLAIAQ 296 (527)
T ss_pred cCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999998899999999999999999999999999999999999999999999887543
No 37
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=7.4e-39 Score=290.52 Aligned_cols=276 Identities=24% Similarity=0.391 Sum_probs=244.9
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC------CCCceeee
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------YKSRVLEL 119 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~------~~~~~~~~ 119 (345)
.+.+|++||||.+|++++||+.+++.+.+++..+..++ ++||||||+|||++++++++.+.+... .+..++++
T Consensus 3 ~~~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l 82 (367)
T PRK14970 3 NFVVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL 82 (367)
T ss_pred chHHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe
Confidence 46789999999999999999999999999999987764 799999999999999999999876321 24455666
Q ss_pred ecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccc
Q 019145 120 NASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199 (345)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~ 199 (345)
++....+.+.++..+...... +..+++++|+|||++.++...++.|++.+++++..+.+|++++...++.
T Consensus 83 ~~~~~~~~~~i~~l~~~~~~~----------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~ 152 (367)
T PRK14970 83 DAASNNSVDDIRNLIDQVRIP----------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKII 152 (367)
T ss_pred ccccCCCHHHHHHHHHHHhhc----------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCC
Confidence 665545556666666554322 1234678999999999999999999999999888888999998889999
Q ss_pred hhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhhCC
Q 019145 200 EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGV 279 (345)
Q Consensus 200 ~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~ 279 (345)
+++.+||..++|.+++.+++..++...+.++|+.+++++++.+++.++||+|.+++.+++++.+.++.||.++|.++++.
T Consensus 153 ~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~~~~it~~~v~~~~~~ 232 (367)
T PRK14970 153 PTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTENLNI 232 (367)
T ss_pred HHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988777999999999999
Q ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhh
Q 019145 280 IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQH 332 (345)
Q Consensus 280 ~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~ 332 (345)
...+.+|++++++..++...++..++.+...|++|..|+..|.++|++++.-+
T Consensus 233 ~~~~~if~l~~ai~~~~~~~a~~~~~~l~~~~~~~~~il~~l~~~fr~ll~~k 285 (367)
T PRK14970 233 LDYDTYINVTDLILENKIPELLLAFNEILRKGFDGHHFIAGLASHFRDLMVSK 285 (367)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999987533
No 38
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.1e-39 Score=279.18 Aligned_cols=261 Identities=28% Similarity=0.338 Sum_probs=227.2
Q ss_pred chhhhhhCCCCCccccccHHHH---HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc
Q 019145 49 QPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (345)
Q Consensus 49 ~~~~~~~~p~~~~~~~g~~~~~---~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (345)
.|++++.||+++++++||++++ ..|.+.+..+..++++|||||||||||+|+.++... +..|..+++.. .
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~------~~~f~~~sAv~-~ 84 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT------NAAFEALSAVT-S 84 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh------CCceEEecccc-c
Confidence 4899999999999999999999 789999999999999999999999999999999998 78899999877 6
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEec--Ccccccchhhh
Q 019145 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC--NYISRIIEPLA 203 (345)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~--n~~~~l~~~l~ 203 (345)
+..+++..++........ +++.||||||+|.|++.+|+.|+..+|+ +.+.+|-+| |+.+.+.++|+
T Consensus 85 gvkdlr~i~e~a~~~~~~----------gr~tiLflDEIHRfnK~QQD~lLp~vE~--G~iilIGATTENPsF~ln~ALl 152 (436)
T COG2256 85 GVKDLREIIEEARKNRLL----------GRRTILFLDEIHRFNKAQQDALLPHVEN--GTIILIGATTENPSFELNPALL 152 (436)
T ss_pred cHHHHHHHHHHHHHHHhc----------CCceEEEEehhhhcChhhhhhhhhhhcC--CeEEEEeccCCCCCeeecHHHh
Confidence 788888888887554321 3567999999999999999999999997 344444443 78889999999
Q ss_pred ccceeEEecCCCHHHHHHHHHHHHH--HhCCC-----CCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCC--CCCHHHHH
Q 019145 204 SRCAKFRFKPLSEEVMSSRVLHICN--EEGLN-----LDAEALSTLSSISQGDLRRAITYLQGAARLFGS--SITSKDLI 274 (345)
Q Consensus 204 ~r~~~i~~~~~~~~~~~~~l~~~~~--~~~~~-----i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~--~it~~~v~ 274 (345)
|||.++.|+|++.+++...+++.+. ..|+. +++++.+.++..++||.|.++|.|+.++..+.. .++.+.++
T Consensus 153 SR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~ 232 (436)
T COG2256 153 SRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLE 232 (436)
T ss_pred hhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHH
Confidence 9999999999999999999999544 34554 789999999999999999999999999977633 34577777
Q ss_pred Hhh----------CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 019145 275 SVS----------GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVL 328 (345)
Q Consensus 275 ~~~----------~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~ 328 (345)
+.+ ++.+++.++.++++++++|.++|+.++.+|++.|+||..|.+.|.+.-..-
T Consensus 233 ~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsED 296 (436)
T COG2256 233 EILQRRSARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASED 296 (436)
T ss_pred HHHhhhhhccCCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 665 456788999999999999999999999999999999999999998876644
No 39
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3.6e-38 Score=299.33 Aligned_cols=275 Identities=26% Similarity=0.389 Sum_probs=246.0
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~-------------- 111 (345)
+.+.|.+||||.+|++++||++++..|..++..++.++ +||+||+|+|||++++.+++.++|...
T Consensus 2 ~~~~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~ 81 (585)
T PRK14950 2 TVQVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCR 81 (585)
T ss_pred ccHHHHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHH
Confidence 35568999999999999999999999999999988877 599999999999999999999976432
Q ss_pred -----CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCce
Q 019145 112 -----YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVT 186 (345)
Q Consensus 112 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~ 186 (345)
.+.+++++++....+.+.+++.+...... +..++++||||||+|.++.+.++.|++++++++..+
T Consensus 82 ~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~----------p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~t 151 (585)
T PRK14950 82 AIAEGSAVDVIEMDAASHTSVDDAREIIERVQFR----------PALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHA 151 (585)
T ss_pred HHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhC----------cccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCe
Confidence 12356677766556677777666543322 223567899999999999999999999999999999
Q ss_pred EEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCC
Q 019145 187 RFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS 266 (345)
Q Consensus 187 ~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~ 266 (345)
.||++++..+++.+.+.+||..+.|.+++..++..++..++.++|+.++++++..|++.++||+|.+++.|++++.+.++
T Consensus 152 v~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~y~~~ 231 (585)
T PRK14950 152 IFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGG 231 (585)
T ss_pred EEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence 99999998889999999999999999999999999999999999999999999999999999999999999999988778
Q ss_pred CCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 019145 267 SITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQ 331 (345)
Q Consensus 267 ~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~ 331 (345)
.||.++|.++++...+..+|++++++..++...++..+..|...|+++..+++.|.++|++++.-
T Consensus 232 ~It~e~V~~ll~~s~~~~vf~Lidal~~~d~~~al~~l~~L~~~g~~~~~il~~L~~~lR~Ll~l 296 (585)
T PRK14950 232 EISLSQVQSLLGISGDEEVKALAEALLAKDLKAALRTLNAVAADGADLRQFTRDLVEYLRQVMLL 296 (585)
T ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999998643
No 40
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.7e-37 Score=292.26 Aligned_cols=275 Identities=25% Similarity=0.403 Sum_probs=245.8
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCC--------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCP-HMLFYGPPGTGKTTTALAIAHQLFGPEL-------------- 111 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~-~lll~G~~G~GKT~la~~la~~l~~~~~-------------- 111 (345)
.+.||.++|+|.+|++++|+++++..|..++..++.. .+||+||+|+|||++|+++++.+.|...
T Consensus 2 ~~~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C 81 (620)
T PRK14948 2 AYEPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELC 81 (620)
T ss_pred CcchHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHH
Confidence 4679999999999999999999999999999998764 5899999999999999999999987432
Q ss_pred ------CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCc
Q 019145 112 ------YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKV 185 (345)
Q Consensus 112 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~ 185 (345)
...++++++.....+.+.+++.+......+ ..++++|+||||+|.|+...++.|++++|+++..
T Consensus 82 ~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p----------~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~ 151 (620)
T PRK14948 82 RAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAP----------VQARWKVYVIDECHMLSTAAFNALLKTLEEPPPR 151 (620)
T ss_pred HHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhCh----------hcCCceEEEEECccccCHHHHHHHHHHHhcCCcC
Confidence 123566777665567778888776654332 2246789999999999999999999999999999
Q ss_pred eEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Q 019145 186 TRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG 265 (345)
Q Consensus 186 ~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~ 265 (345)
+.||++++.+.++.+++++||..+.|.+++.+++..++.+++.++|+.++++++..+++.++|++|.+++++++++.+.
T Consensus 152 tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLeklsL~~- 230 (620)
T PRK14948 152 VVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLLP- 230 (620)
T ss_pred eEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcc-
Confidence 9999999988899999999999999999999999999999999999999999999999999999999999999988775
Q ss_pred CCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhh
Q 019145 266 SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQH 332 (345)
Q Consensus 266 ~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~ 332 (345)
+.||.++|+++++...+..++++++++..++...++..+..|...|+++..++..|.++++.++.-+
T Consensus 231 ~~It~e~V~~lvg~~~e~~i~~Ll~ai~~~d~~~al~~~~~Ll~~g~~p~~iL~~L~~~~RDLL~~K 297 (620)
T PRK14948 231 GPITPEAVWDLLGAVPEQDLLNLLKALASNDPESLLDSCRQLLDRGREPLAILQGLAAFYRDLLLAK 297 (620)
T ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999999999999999999999999999999987543
No 41
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=100.00 E-value=1.9e-36 Score=270.77 Aligned_cols=268 Identities=44% Similarity=0.776 Sum_probs=234.8
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (345)
...+|.++|+|.+|++++|+++++..+..++..+..++++|+||||||||++++.+++++.+... ...++++++++..+
T Consensus 3 ~~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~-~~~~i~~~~~~~~~ 81 (319)
T PRK00440 3 MEEIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDW-RENFLELNASDERG 81 (319)
T ss_pred ccCccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc-ccceEEeccccccc
Confidence 45689999999999999999999999999999988888999999999999999999999866543 45677777766555
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccc
Q 019145 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206 (345)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~ 206 (345)
...+...+..+....+. ....+++|+|||++.++.+.++.|+++++.++..+.+|+++|...++.+++.+||
T Consensus 82 ~~~~~~~i~~~~~~~~~--------~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 82 IDVIRNKIKEFARTAPV--------GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred hHHHHHHHHHHHhcCCC--------CCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 55554555444332211 1134679999999999999999999999998888999999998889999999999
Q ss_pred eeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhhCCCCHHHHH
Q 019145 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286 (345)
Q Consensus 207 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~~~~~~~~ 286 (345)
..++|.+++.+++..+++.++.++|+.+++++++.+++.++||+|.+++.++.++.+ ++.||.++|.++++...+.++|
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~-~~~it~~~v~~~~~~~~~~~i~ 232 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAAT-GKEVTEEAVYKITGTARPEEIR 232 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHhCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999988865 5679999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH-cCCCHHHHHHHHHHH
Q 019145 287 GLFAVCRSGDFDLANKEVNNIIA-EGYPASLLLSQVTLL 324 (345)
Q Consensus 287 ~l~~~~~~~~~~~a~~~l~~l~~-~g~~~~~i~~~l~~~ 324 (345)
++++++..++...++..+.+|+. .|.++..|+..+...
T Consensus 233 ~l~~~~~~~~~~~a~~~l~~ll~~~g~~~~~i~~~l~~~ 271 (319)
T PRK00440 233 EMIELALNGDFTEAREKLRDLMIDYGLSGEDIIKQIHRE 271 (319)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999999999999999984 899999998888653
No 42
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=100.00 E-value=4.1e-35 Score=264.06 Aligned_cols=266 Identities=34% Similarity=0.569 Sum_probs=222.5
Q ss_pred chhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc--
Q 019145 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG-- 126 (345)
Q Consensus 49 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~-- 126 (345)
.+|.+||+|.+|++++|++.++..+..++..+..++++|+||||||||++|+++++++.+... ...++.+++.+...
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~-~~~~~~i~~~~~~~~~ 81 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPW-ENNFTEFNVADFFDQG 81 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCccc-ccceEEechhhhhhcc
Confidence 479999999999999999999999999999988888999999999999999999999865431 23455666543210
Q ss_pred ------------------------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc
Q 019145 127 ------------------------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (345)
Q Consensus 127 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~ 182 (345)
...++..+...... .+..+.+++|||||++.++.+.++.|..+++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~ 152 (337)
T PRK12402 82 KKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASY---------RPLSADYKTILLDNAEALREDAQQALRRIMEQY 152 (337)
T ss_pred hhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhc---------CCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhc
Confidence 01111111111111 012245679999999999999999999999988
Q ss_pred CCceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019145 183 SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (345)
Q Consensus 183 ~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~ 262 (345)
+..+.+|++++.+..+.+.+.+||..+.|.|++.+++..++...+.++|+.+++++++.+++.++||+|.+++.+++++.
T Consensus 153 ~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~~~~~ 232 (337)
T PRK12402 153 SRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAAL 232 (337)
T ss_pred cCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 88888999988888888999999999999999999999999999999999999999999999999999999999998773
Q ss_pred HhCCCCCHHHHHHhhCC-CCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHH
Q 019145 263 LFGSSITSKDLISVSGV-IPPEVVEGLFAVCRSGDFDLANKEVNNII-AEGYPASLLLSQVTLLL 325 (345)
Q Consensus 263 ~~~~~it~~~v~~~~~~-~~~~~~~~l~~~~~~~~~~~a~~~l~~l~-~~g~~~~~i~~~l~~~~ 325 (345)
.++.||.++|.++++. ..+.++|++++++..++...++..+.+|+ ++|.++..|+..|....
T Consensus 233 -~~~~It~~~v~~~~~~~~~~~~i~~l~~ai~~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~ 296 (337)
T PRK12402 233 -AAGEITMEAAYEALGDVGTDEVIESLLDAAEAGDFTDARKTLDDLLIDEGLSGGEVLEELLRVA 296 (337)
T ss_pred -cCCCCCHHHHHHHhCCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3457999999999987 55889999999999999999999999997 79999999999886543
No 43
>PRK13342 recombination factor protein RarA; Reviewed
Probab=100.00 E-value=3.8e-33 Score=255.81 Aligned_cols=259 Identities=28% Similarity=0.354 Sum_probs=217.2
Q ss_pred hhhhhhCCCCCccccccHHHHHH---HHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRV---LTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~---l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (345)
||+++|||.+|++++|+++.+.. +..++..+..++++|+||||||||++|+.+++.. +..++.+++.. .+
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~------~~~~~~l~a~~-~~ 73 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT------DAPFEALSAVT-SG 73 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh------CCCEEEEeccc-cc
Confidence 79999999999999999999766 9999999988899999999999999999999987 56788888765 34
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEec--Ccccccchhhhc
Q 019145 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC--NYISRIIEPLAS 204 (345)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~--n~~~~l~~~l~~ 204 (345)
...++..+........ .+...+|+|||+|.++...++.|+..+++ ..+.+|.++ |....+.+++.+
T Consensus 74 ~~~ir~ii~~~~~~~~----------~g~~~vL~IDEi~~l~~~~q~~LL~~le~--~~iilI~att~n~~~~l~~aL~S 141 (413)
T PRK13342 74 VKDLREVIEEARQRRS----------AGRRTILFIDEIHRFNKAQQDALLPHVED--GTITLIGATTENPSFEVNPALLS 141 (413)
T ss_pred HHHHHHHHHHHHHhhh----------cCCceEEEEechhhhCHHHHHHHHHHhhc--CcEEEEEeCCCChhhhccHHHhc
Confidence 5555555555433211 12457999999999999999999999986 334445443 445678899999
Q ss_pred cceeEEecCCCHHHHHHHHHHHHHHh--CC-CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhhCC--
Q 019145 205 RCAKFRFKPLSEEVMSSRVLHICNEE--GL-NLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGV-- 279 (345)
Q Consensus 205 r~~~i~~~~~~~~~~~~~l~~~~~~~--~~-~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~-- 279 (345)
||.++.|.+++.+++..++.+.+... ++ .+++++++.+++.++||+|.+++.++.++.. +..|+.+++.++++.
T Consensus 142 R~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~-~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 142 RAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALG-VDSITLELLEEALQKRA 220 (413)
T ss_pred cceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cCCCCHHHHHHHHhhhh
Confidence 99999999999999999999987653 54 8999999999999999999999999998866 667999999988764
Q ss_pred --------CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 019145 280 --------IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVL 328 (345)
Q Consensus 280 --------~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~ 328 (345)
...+.+..+++++.+++.++++..+..|++.|+||..|++.|......-
T Consensus 221 ~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 221 ARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred hccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 2355677888889999999999999999999999999999998877543
No 44
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=100.00 E-value=8.6e-34 Score=240.66 Aligned_cols=268 Identities=22% Similarity=0.287 Sum_probs=224.7
Q ss_pred cCcchhhhhhCCCCCccccccHHHH---HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~---~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
...+|+.++.||++++|.+||++++ ..|+..+++++.++++||||||||||++|+.++...... ...|+++++.
T Consensus 123 ~qh~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~---SyrfvelSAt 199 (554)
T KOG2028|consen 123 LQHKPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKH---SYRFVELSAT 199 (554)
T ss_pred hccCChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCC---ceEEEEEecc
Confidence 4677999999999999999999988 578889999999999999999999999999999886332 3678888887
Q ss_pred CccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEec--Ccccccch
Q 019145 123 DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC--NYISRIIE 200 (345)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~--n~~~~l~~ 200 (345)
. .+..+++..++........ ..++.|+||||+|.+.+.+|+.|+..+|.. .+.+|-+| |+.+.+..
T Consensus 200 ~-a~t~dvR~ife~aq~~~~l---------~krkTilFiDEiHRFNksQQD~fLP~VE~G--~I~lIGATTENPSFqln~ 267 (554)
T KOG2028|consen 200 N-AKTNDVRDIFEQAQNEKSL---------TKRKTILFIDEIHRFNKSQQDTFLPHVENG--DITLIGATTENPSFQLNA 267 (554)
T ss_pred c-cchHHHHHHHHHHHHHHhh---------hcceeEEEeHHhhhhhhhhhhcccceeccC--ceEEEecccCCCccchhH
Confidence 6 4667788888876655322 235679999999999999999999999873 33344433 77788999
Q ss_pred hhhccceeEEecCCCHHHHHHHHHHHHH------Hh--C-----CCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh---
Q 019145 201 PLASRCAKFRFKPLSEEVMSSRVLHICN------EE--G-----LNLDAEALSTLSSISQGDLRRAITYLQGAARLF--- 264 (345)
Q Consensus 201 ~l~~r~~~i~~~~~~~~~~~~~l~~~~~------~~--~-----~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~--- 264 (345)
++.+||.++.+.+++.+.+..+|.+... +. + +.+++.+++.++..|.||.|.++|.|+......
T Consensus 268 aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr 347 (554)
T KOG2028|consen 268 ALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTR 347 (554)
T ss_pred HHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999988543 11 1 236788999999999999999999999774332
Q ss_pred -C----CCCCHHHHHHhh----------CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 019145 265 -G----SSITSKDLISVS----------GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVL 328 (345)
Q Consensus 265 -~----~~it~~~v~~~~----------~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~ 328 (345)
| ..++.+||++.+ +..+++.++.+.++++++|..+++.+|.+|++.|+||+.+.+.|.+.-..-
T Consensus 348 ~g~~~~~~lSidDvke~lq~s~~~YDr~Ge~HYntISA~HKSmRG~D~nAslY~LaRMLegGEdPLYVARRlvR~ASED 426 (554)
T KOG2028|consen 348 SGQSSRVLLSIDDVKEGLQRSHILYDRAGEEHYNTISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASED 426 (554)
T ss_pred cCCcccceecHHHHHHHHhhccceecccchhHHHHHHHHHHhhcCCccchHHHHHHHHHccCCCcHHHHHHHHHHhhcc
Confidence 2 248999998775 567789999999999999999999999999999999999999999887644
No 45
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=100.00 E-value=4.4e-33 Score=266.83 Aligned_cols=263 Identities=22% Similarity=0.319 Sum_probs=214.5
Q ss_pred CcchhhhhhCCCCCccccccHHHH---HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~---~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (345)
...||+++|||.+|++++|+++.+ ..+.+.+..+..++++|+|||||||||+|+++++.. ...++.+++..
T Consensus 14 ~~~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~------~~~f~~lna~~ 87 (725)
T PRK13341 14 SEAPLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT------RAHFSSLNAVL 87 (725)
T ss_pred ccCChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh------cCcceeehhhh
Confidence 445999999999999999999988 478888999988999999999999999999999987 45666777654
Q ss_pred ccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEec--Ccccccchh
Q 019145 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC--NYISRIIEP 201 (345)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~--n~~~~l~~~ 201 (345)
.+...++..+........ ....+.+|||||+|.+++..++.|+..+++ ..+.+|.++ |....+.++
T Consensus 88 -~~i~dir~~i~~a~~~l~---------~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~--g~IiLI~aTTenp~~~l~~a 155 (725)
T PRK13341 88 -AGVKDLRAEVDRAKERLE---------RHGKRTILFIDEVHRFNKAQQDALLPWVEN--GTITLIGATTENPYFEVNKA 155 (725)
T ss_pred -hhhHHHHHHHHHHHHHhh---------hcCCceEEEEeChhhCCHHHHHHHHHHhcC--ceEEEEEecCCChHhhhhhH
Confidence 344444444444322111 112456999999999999999999999986 234444433 444578899
Q ss_pred hhccceeEEecCCCHHHHHHHHHHHHH-------HhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhC----C--CC
Q 019145 202 LASRCAKFRFKPLSEEVMSSRVLHICN-------EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG----S--SI 268 (345)
Q Consensus 202 l~~r~~~i~~~~~~~~~~~~~l~~~~~-------~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~----~--~i 268 (345)
+.+||.++.|+|++.+++..++++.+. .+++.+++++++.|++.++||+|.+++.|+.++.... . .|
T Consensus 156 L~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le~a~~~~~~~~~~~i~I 235 (725)
T PRK13341 156 LVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELAVESTPPDEDGLIDI 235 (725)
T ss_pred hhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccCCCCceec
Confidence 999999999999999999999999887 4568899999999999999999999999998775431 1 27
Q ss_pred CHHHHHHhh----------CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 019145 269 TSKDLISVS----------GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFV 327 (345)
Q Consensus 269 t~~~v~~~~----------~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~ 327 (345)
|.+.+.+.+ +..+++.++.+++++.++|+++|+.++..|++.|+||..|++.|......
T Consensus 236 t~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asE 304 (725)
T PRK13341 236 TLAIAEESIQQRAVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASE 304 (725)
T ss_pred cHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 777776654 45788999999999999999999999999999999999999999888774
No 46
>PRK04195 replication factor C large subunit; Provisional
Probab=100.00 E-value=7.7e-32 Score=251.75 Aligned_cols=259 Identities=29% Similarity=0.360 Sum_probs=210.8
Q ss_pred chhhhhhCCCCCccccccHHHHHHHHHHHHcC---C-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc
Q 019145 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA---N-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (345)
Q Consensus 49 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~---~-~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (345)
.+|++||+|.++++++|+++.+..+..|+... . .++++|+||||||||++|+++++++ +..++++++++.
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el------~~~~ielnasd~ 75 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY------GWEVIELNASDQ 75 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc------CCCEEEEccccc
Confidence 47999999999999999999999999998642 2 4568999999999999999999998 678999999887
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH----HHHHHHHHHHhhcCCceEEEEecCcccccch
Q 019145 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE----DAQNALRRTMETYSKVTRFFFICNYISRIIE 200 (345)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~----~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~ 200 (345)
.....+...+......... ...++++|||||+|.++. ..++.|+++++. ....+|+++|....+..
T Consensus 76 r~~~~i~~~i~~~~~~~sl--------~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~ 145 (482)
T PRK04195 76 RTADVIERVAGEAATSGSL--------FGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSL 145 (482)
T ss_pred ccHHHHHHHHHHhhccCcc--------cCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccch
Confidence 7666666555543322110 012568999999999975 567888999885 34567888888877766
Q ss_pred -hhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhhCC
Q 019145 201 -PLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGV 279 (345)
Q Consensus 201 -~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~ 279 (345)
.++++|..+.|++++.+++..++..++..+|+.+++++++.|++.++||+|.+++.|+.++. ..+.|+.+++..+...
T Consensus 146 k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~-~~~~it~~~v~~~~~~ 224 (482)
T PRK04195 146 RELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAE-GYGKLTLEDVKTLGRR 224 (482)
T ss_pred hhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhc-CCCCCcHHHHHHhhcC
Confidence 89999999999999999999999999999999999999999999999999999999998542 2356999999998877
Q ss_pred CCHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 019145 280 IPPEVVEGLFAVCRS-GDFDLANKEVNNIIAEGYPASLLLSQVTLLLFV 327 (345)
Q Consensus 280 ~~~~~~~~l~~~~~~-~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~ 327 (345)
.....+|++++++.. ++...++..+.. ..++|..++..|...+..
T Consensus 225 d~~~~if~~l~~i~~~k~~~~a~~~~~~---~~~~~~~i~~~l~en~~~ 270 (482)
T PRK04195 225 DREESIFDALDAVFKARNADQALEASYD---VDEDPDDLIEWIDENIPK 270 (482)
T ss_pred CCCCCHHHHHHHHHCCCCHHHHHHHHHc---ccCCHHHHHHHHHhcccc
Confidence 778889999998886 777777665443 456777766666555543
No 47
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=100.00 E-value=3.5e-30 Score=229.61 Aligned_cols=258 Identities=29% Similarity=0.397 Sum_probs=207.7
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcE-EEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~l-ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (345)
....+|.+||||.+|++++|+++....+..++..+..+++ +|+||||+|||++++++++++ +.++.++++.+
T Consensus 6 ~~~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~------~~~~~~i~~~~- 78 (316)
T PHA02544 6 PNEFMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV------GAEVLFVNGSD- 78 (316)
T ss_pred CCCCcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh------CccceEeccCc-
Confidence 4567899999999999999999999999999999888886 559999999999999999987 45677788776
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCC-CHHHHHHHHHHHhhcCCceEEEEecCcccccchhhh
Q 019145 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM-TEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203 (345)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l-~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~ 203 (345)
...+.++..+..+..... ..+.+++|+|||+|.+ ....++.|..+++.++..+.+|+++|....+.++++
T Consensus 79 ~~~~~i~~~l~~~~~~~~---------~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~ 149 (316)
T PHA02544 79 CRIDFVRNRLTRFASTVS---------LTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLR 149 (316)
T ss_pred ccHHHHHHHHHHHHHhhc---------ccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHH
Confidence 234444444444332211 1135679999999999 667788888999998889999999999999999999
Q ss_pred ccceeEEecCCCHHHHHHHHH-------HHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHh
Q 019145 204 SRCAKFRFKPLSEEVMSSRVL-------HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISV 276 (345)
Q Consensus 204 ~r~~~i~~~~~~~~~~~~~l~-------~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~ 276 (345)
+||..+.|++|+.++...++. ..+..+|++++++++..+++.+.||.|.+++.++..+ .+..++.+++...
T Consensus 150 sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l~~l~~~~--~~~~i~~~~l~~~ 227 (316)
T PHA02544 150 SRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQRYA--STGKIDAGILSEV 227 (316)
T ss_pred hhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH--ccCCCCHHHHHHh
Confidence 999999999999888775544 3455689999999999999999999999999999766 3467998888775
Q ss_pred hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 019145 277 SGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVL 328 (345)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~ 328 (345)
. ...++.+++++...+...+.. .... -+.++..++..+...+...
T Consensus 228 ~----~~~~~~l~~~l~~~d~~~~~~-~~~~--~~~~~~~~l~~~~~~~~~~ 272 (316)
T PHA02544 228 T----NSDIDDVVEALKAKDFKAVRA-LAPN--YANDYASFVGKLYDELYPQ 272 (316)
T ss_pred h----HHHHHHHHHHHHcCCHHHHHH-HHHH--hccCHHHHHHHHHHHHHHh
Confidence 5 567889999999998887776 3332 2778888888876555443
No 48
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.98 E-value=2.6e-30 Score=211.88 Aligned_cols=265 Identities=31% Similarity=0.521 Sum_probs=212.9
Q ss_pred hhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC------------------
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL------------------ 111 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~------------------ 111 (345)
.|.++|+|++++.+.++++....+......+..||+++|||+|+||.|.+.++.+++.+.+-
T Consensus 2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kkl 81 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKL 81 (351)
T ss_pred cchhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceE
Confidence 59999999999999999999999999888888999999999999999999999999976321
Q ss_pred -----CCCceeeeecCCccchH--HHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCC
Q 019145 112 -----YKSRVLELNASDDRGIN--VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK 184 (345)
Q Consensus 112 -----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~ 184 (345)
.+...++++++|....+ .+.+.++..++...-.. .....+++++|.|+|.++++.|.+|.+.+|.+..
T Consensus 82 EistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~-----~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 82 EISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIET-----QGQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred EEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhh-----ccccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 13356677777654333 45666776655432111 1223789999999999999999999999999999
Q ss_pred ceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 019145 185 VTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264 (345)
Q Consensus 185 ~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~ 264 (345)
++++|++||+..++.+++++||-.+.++.|+++|+...+...++++|+.++.+.+..|++.|+||+|+++-+++.+....
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n 236 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNN 236 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887442
Q ss_pred C------CCCCHHHHHHhhCCCCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 019145 265 G------SSITSKDLISVSGVIPPEVVEGLFAVCRS----GDFDLANKEVNNIIAEGYPASLLLSQVTLLLFV 327 (345)
Q Consensus 265 ~------~~it~~~v~~~~~~~~~~~~~~l~~~~~~----~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~ 327 (345)
. ..|...|- +..+.++.+.+.. ...-+.+..|.+|+.++++|.-|+..|.+.+..
T Consensus 237 ~~~~a~~~~i~~~dW--------e~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL~~CIPP~~Ilk~Ll~~Ll~ 301 (351)
T KOG2035|consen 237 EPFTANSQVIPKPDW--------EIYIQEIARVILKEQSPAKLLEVRGRLYELLSHCIPPNTILKELLEELLL 301 (351)
T ss_pred ccccccCCCCCCccH--------HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Confidence 1 11211111 1223333333322 233445778899999999999999988877654
No 49
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.97 E-value=1.1e-30 Score=218.72 Aligned_cols=284 Identities=35% Similarity=0.506 Sum_probs=249.1
Q ss_pred ccCcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc
Q 019145 45 LQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (345)
Q Consensus 45 ~~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (345)
....+||.++|+|..+.+++++++++..+.+....++.+|+|+|||||+|||+.+.+.++.+.++......+.++++++.
T Consensus 25 ~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~ 104 (360)
T KOG0990|consen 25 PQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDD 104 (360)
T ss_pred cccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCc
Confidence 36778999999999999999999999999999999999999999999999999999999999887666667889999999
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhc
Q 019145 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204 (345)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~ 204 (345)
++.+.++..+..+........ ......++++|+||+|.++.+.|++|.+.++.+..+++|++++|.+.++.+++.+
T Consensus 105 rgid~vr~qi~~fast~~~~~----fst~~~fKlvILDEADaMT~~AQnALRRviek~t~n~rF~ii~n~~~ki~pa~qs 180 (360)
T KOG0990|consen 105 RGIDPVRQQIHLFASTQQPTT----YSTHAAFKLVILDEADAMTRDAQNALRRVIEKYTANTRFATISNPPQKIHPAQQS 180 (360)
T ss_pred cCCcchHHHHHHHHhhcccee----ccccCceeEEEecchhHhhHHHHHHHHHHHHHhccceEEEEeccChhhcCchhhc
Confidence 999999988888766532100 0112467899999999999999999999999999999999999999999999999
Q ss_pred cceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhC----CCCCHHHHHHhhCCC
Q 019145 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG----SSITSKDLISVSGVI 280 (345)
Q Consensus 205 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~----~~it~~~v~~~~~~~ 280 (345)
||..+.|.|++..+....+..+++.+....+++....++..+.||+|.++|.|+..+...+ ..++.++|..-.+..
T Consensus 181 Rctrfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~~~~~~e~~~~~~~vy~c~g~p 260 (360)
T KOG0990|consen 181 RCTRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSILKKVMERKELNNPNDLVYQCKGAP 260 (360)
T ss_pred ccccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCCCCchhhHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999999999887763 236667788888888
Q ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHhhh
Q 019145 281 PPEVVEGLFAVCRSGDFDLANKEVNNIIA-EGYPASLLLSQVTLLLFVLMVQH 332 (345)
Q Consensus 281 ~~~~~~~l~~~~~~~~~~~a~~~l~~l~~-~g~~~~~i~~~l~~~~~~~~~~~ 332 (345)
...++..+++.+..+....++.-+..+.. .|.+..+++..+...+..+..+.
T Consensus 261 ~~~dI~~I~~~il~~~~~~~~~~is~lk~~~gla~~d~i~~l~~~~~~~~~~~ 313 (360)
T KOG0990|consen 261 QPSDIRQIIEKRMNGEDIELMLDDSELKKPKGLARQDRRAELEQRFAIVISKT 313 (360)
T ss_pred ChhHHHHHHHHHhcCchHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHhcch
Confidence 88899999999999998777777777765 68888888888888887776555
No 50
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.97 E-value=6.3e-30 Score=207.20 Aligned_cols=197 Identities=24% Similarity=0.309 Sum_probs=143.8
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHHc-----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeee
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 120 (345)
....++.+++||.+|+|++||++++..+.-.++. ...+|++||||||+||||+|+.+|+++ +.++..++
T Consensus 9 ~~~~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~------~~~~~~~s 82 (233)
T PF05496_consen 9 EEEAPLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL------GVNFKITS 82 (233)
T ss_dssp ---S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC------T--EEEEE
T ss_pred CcchhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc------CCCeEecc
Confidence 3456789999999999999999999887665542 346789999999999999999999998 67777788
Q ss_pred cCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------------
Q 019145 121 ASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS----------------- 183 (345)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~----------------- 183 (345)
++......++...+..+ .+..||||||+|.+++.+++.|+..+|+..
T Consensus 83 g~~i~k~~dl~~il~~l----------------~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~ 146 (233)
T PF05496_consen 83 GPAIEKAGDLAAILTNL----------------KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRIN 146 (233)
T ss_dssp CCC--SCHHHHHHHHT------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE
T ss_pred chhhhhHHHHHHHHHhc----------------CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeecc
Confidence 76544444444444332 134699999999999999999999999643
Q ss_pred -CceEEEEecCcccccchhhhcccee-EEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019145 184 -KVTRFFFICNYISRIIEPLASRCAK-FRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261 (345)
Q Consensus 184 -~~~~ii~~~n~~~~l~~~l~~r~~~-i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~ 261 (345)
+...+|-+|+....+..++++||.+ .++..++.+++.+++.+.+...++.++++++..|+.+|.|.+|-|.+.|..+.
T Consensus 147 l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 147 LPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp ----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred CCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 1234555667778899999999996 47999999999999999999999999999999999999999999999998876
Q ss_pred HHh
Q 019145 262 RLF 264 (345)
Q Consensus 262 ~~~ 264 (345)
.++
T Consensus 227 D~a 229 (233)
T PF05496_consen 227 DFA 229 (233)
T ss_dssp CCC
T ss_pred HHH
Confidence 543
No 51
>PRK04132 replication factor C small subunit; Provisional
Probab=99.97 E-value=2.6e-28 Score=235.00 Aligned_cols=234 Identities=44% Similarity=0.686 Sum_probs=210.5
Q ss_pred EEEeC--CCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEc
Q 019145 85 MLFYG--PPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (345)
Q Consensus 85 lll~G--~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiD 162 (345)
-+..| |.+.||||+|+++++++++. ..+.+++++|+++..+.+.++..++.+....... ..+++|+|||
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~-~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~--------~~~~KVvIID 637 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGE-NWRHNFLELNASDERGINVIREKVKEFARTKPIG--------GASFKIIFLD 637 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcc-cccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcC--------CCCCEEEEEE
Confidence 36678 99999999999999998764 3457899999999889999999888776443211 1256899999
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 019145 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTL 242 (345)
Q Consensus 163 E~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l 242 (345)
|+|.++.+.++.|++.+|+++.++.||++||.+.++.++++|||..+.|.+++.+++...+..+++++|+.++++++..|
T Consensus 638 EaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~I 717 (846)
T PRK04132 638 EADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAI 717 (846)
T ss_pred CcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHH
Q 019145 243 SSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNII-AEGYPASLLLSQV 321 (345)
Q Consensus 243 ~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~-~~g~~~~~i~~~l 321 (345)
+..++||+|.++|.|+.++.. ...||.++|..+.+....+.++++++.+..++...++..+.+++ ..|.++..++..+
T Consensus 718 a~~s~GDlR~AIn~Lq~~~~~-~~~It~~~V~~~~~~~~~~~I~~il~~~l~~~~~~ar~~l~ell~~~G~~~~~iL~~l 796 (846)
T PRK04132 718 LYIAEGDMRRAINILQAAAAL-DDKITDENVFLVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQM 796 (846)
T ss_pred HHHcCCCHHHHHHHHHHHHHh-cCCCCHHHHHHHhCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999999988754 45699999999999999999999999999999999999999987 7899999999999
Q ss_pred HHHHHHH
Q 019145 322 TLLLFVL 328 (345)
Q Consensus 322 ~~~~~~~ 328 (345)
...+...
T Consensus 797 ~~~l~~~ 803 (846)
T PRK04132 797 HREVFNL 803 (846)
T ss_pred HHHHHhc
Confidence 9888654
No 52
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=1.1e-26 Score=206.01 Aligned_cols=242 Identities=19% Similarity=0.280 Sum_probs=199.6
Q ss_pred CCccccccHHHHHHHHHHHHcCCCCcE-EEeCCCCCCHHHHHHHHHHHhcCCCC--CCCceeeeec--CCccchHHHHHH
Q 019145 59 QVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFGPEL--YKSRVLELNA--SDDRGINVVRTK 133 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~l-ll~G~~G~GKT~la~~la~~l~~~~~--~~~~~~~~~~--~~~~~~~~~~~~ 133 (345)
+|++++||+++++.+..++..++.+|+ +|+||+|+|||++|+.+++.+.|... ...++..+.. ....+.+.+++.
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~ 81 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNI 81 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHH
Confidence 688999999999999999999998885 89999999999999999999987532 2334545543 233456667776
Q ss_pred HHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccceeEEecC
Q 019145 134 IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKP 213 (345)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~ 213 (345)
...+... +..++++|+|||++|.++...++.|++.+|++|+++.+|++|+.++++.++++|||..+.|.+
T Consensus 82 ~~~~~~~----------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~ 151 (313)
T PRK05564 82 IEEVNKK----------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNR 151 (313)
T ss_pred HHHHhcC----------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCC
Confidence 6554332 233578899999999999999999999999999999999999989999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhhCCCCHHHHHHHHHHHH
Q 019145 214 LSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVCR 293 (345)
Q Consensus 214 ~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~~~~~~~~~l~~~~~ 293 (345)
++.+++..|+...+. .++++.+..++..++|++..+........ .. ...+.++.+++++.
T Consensus 152 ~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~~a~~~~~~~~--------~~--------~~~~~~~~~~~~l~ 211 (313)
T PRK05564 152 LSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPGKVEKFIEDDS--------LK--------NIRNMSLEILKDIK 211 (313)
T ss_pred cCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHHHHHhcccH--------HH--------HHHHHHHHHHHHHH
Confidence 999999999976542 46788899999999999888765542211 00 11346788999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 294 SGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 294 ~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
.++...++..+..+...+.++..++..|.+.+++++.
T Consensus 212 ~~~~~~~l~~~~~l~~~~~~~~~~l~~l~~~~rdll~ 248 (313)
T PRK05564 212 KSNINILLKYENFLIKYKENWEEILTCILSYIRDSLL 248 (313)
T ss_pred cCCHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998874
No 53
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.95 E-value=1.9e-25 Score=199.40 Aligned_cols=210 Identities=20% Similarity=0.246 Sum_probs=166.4
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHc-----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeec
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 121 (345)
....|..+|||.+|++++|+++.+..+..++.. ...++++|+||||||||++|+++++++ +..+...++
T Consensus 11 ~~~~~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l------~~~~~~~~~ 84 (328)
T PRK00080 11 EEDEIERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM------GVNIRITSG 84 (328)
T ss_pred ccchhhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh------CCCeEEEec
Confidence 334677899999999999999999888877753 334579999999999999999999998 344444444
Q ss_pred CCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC------------------
Q 019145 122 SDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------------------ 183 (345)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~------------------ 183 (345)
+.......+...+... ....+|+|||+|.++....+.++..+++..
T Consensus 85 ~~~~~~~~l~~~l~~l----------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l 148 (328)
T PRK00080 85 PALEKPGDLAAILTNL----------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDL 148 (328)
T ss_pred ccccChHHHHHHHHhc----------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecC
Confidence 3322222222222211 134699999999999888888888887542
Q ss_pred CceEEEEecCcccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019145 184 KVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (345)
Q Consensus 184 ~~~~ii~~~n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~ 262 (345)
+...+|.+++....+.+++++||. .+.|.+++.+++.+++++.+...++.++++++..|++.|+|++|.+.+.++.+..
T Consensus 149 ~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~ 228 (328)
T PRK00080 149 PPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVRD 228 (328)
T ss_pred CCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 235677788888889999999985 7899999999999999999999999999999999999999999999999988765
Q ss_pred Hh----CCCCCHHHHHHhhC
Q 019145 263 LF----GSSITSKDLISVSG 278 (345)
Q Consensus 263 ~~----~~~it~~~v~~~~~ 278 (345)
++ ...|+.+++.....
T Consensus 229 ~a~~~~~~~I~~~~v~~~l~ 248 (328)
T PRK00080 229 FAQVKGDGVITKEIADKALD 248 (328)
T ss_pred HHHHcCCCCCCHHHHHHHHH
Confidence 54 35699988887764
No 54
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.94 E-value=1.6e-24 Score=192.60 Aligned_cols=195 Identities=24% Similarity=0.409 Sum_probs=157.9
Q ss_pred hhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-----C--------------
Q 019145 53 EKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-----Y-------------- 112 (345)
Q Consensus 53 ~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~-----~-------------- 112 (345)
..++|..+.+++||+++...|...+..++.+| +||+||+|+|||++|+.+++.+.|... .
T Consensus 15 ~~~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~ 94 (351)
T PRK09112 15 GVPSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQ 94 (351)
T ss_pred CCCCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHH
Confidence 35799999999999999999999999999888 799999999999999999999987310 0
Q ss_pred -----CCceeeeecC---------CccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHH
Q 019145 113 -----KSRVLELNAS---------DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRT 178 (345)
Q Consensus 113 -----~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~ 178 (345)
..++..+..+ ...+++.++.....+...+ ..+.++|+||||+|.++...++.|++.
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~----------~~g~~rVviIDeAd~l~~~aanaLLk~ 164 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTS----------GDGNWRIVIIDPADDMNRNAANAILKT 164 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhcc----------ccCCceEEEEEchhhcCHHHHHHHHHH
Confidence 0112223211 1123455554444333221 234678999999999999999999999
Q ss_pred HhhcCCceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 019145 179 METYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258 (345)
Q Consensus 179 le~~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~ 258 (345)
+|+++.++.+|++++.+..+.+++++||..+.|.|++.+++..++...+...+ ++++++..+++.++|++|.+++.++
T Consensus 165 LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s~G~pr~Al~ll~ 242 (351)
T PRK09112 165 LEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRSKGSVRKALLLLN 242 (351)
T ss_pred HhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHcCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999988554333 7799999999999999999999885
Q ss_pred H
Q 019145 259 G 259 (345)
Q Consensus 259 ~ 259 (345)
.
T Consensus 243 ~ 243 (351)
T PRK09112 243 Y 243 (351)
T ss_pred c
Confidence 4
No 55
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.93 E-value=1.6e-24 Score=179.06 Aligned_cols=205 Identities=20% Similarity=0.255 Sum_probs=166.7
Q ss_pred hhhhCCCCCccccccHHHHHHHHHHHHc-----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc
Q 019145 52 VEKYRPKQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (345)
Q Consensus 52 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (345)
....||+.|++++||++++..+.-.++. ....|+||+||||.||||+|+.+|+++ +.++-..+++....
T Consensus 17 e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em------gvn~k~tsGp~leK 90 (332)
T COG2255 17 ERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL------GVNLKITSGPALEK 90 (332)
T ss_pred hcccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh------cCCeEecccccccC
Confidence 3568999999999999999888777654 345679999999999999999999999 55666555554444
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC------------------CceEE
Q 019145 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------------------KVTRF 188 (345)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~------------------~~~~i 188 (345)
..++...+..+ .+.+|+||||+|.+++..-+.|+..||++. +..-+
T Consensus 91 ~gDlaaiLt~L----------------e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 91 PGDLAAILTNL----------------EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred hhhHHHHHhcC----------------CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 44444444432 255799999999999999999999999653 23335
Q ss_pred EEecCcccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh---
Q 019145 189 FFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF--- 264 (345)
Q Consensus 189 i~~~n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~--- 264 (345)
|-+|+....+..++++||. +.++..++.+|+..++.+.+..-++.+++++...|+++|.|.+|-+.+.|..+..++
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDfa~V~ 234 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRVRDFAQVK 234 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHHHHHHHHHHHh
Confidence 5566777889999999998 678999999999999999999999999999999999999999999999998887665
Q ss_pred -CCCCCHHHHHHhhC
Q 019145 265 -GSSITSKDLISVSG 278 (345)
Q Consensus 265 -~~~it~~~v~~~~~ 278 (345)
...|+.+.+.+++.
T Consensus 235 ~~~~I~~~ia~~aL~ 249 (332)
T COG2255 235 GDGDIDRDIADKALK 249 (332)
T ss_pred cCCcccHHHHHHHHH
Confidence 35577776666553
No 56
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.93 E-value=1.2e-24 Score=204.36 Aligned_cols=246 Identities=24% Similarity=0.326 Sum_probs=181.3
Q ss_pred hHHHhhhccccccCcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC---C
Q 019145 34 EDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP---E 110 (345)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~---~ 110 (345)
+.+.-++++.. .-..||.++|||.+|++++|++..++.++..+......+++|+||||||||++|+++++..... .
T Consensus 39 ~~~~~~~~~~~-~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~ 117 (531)
T TIGR02902 39 ELEKLNKMRAI-RLTEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASP 117 (531)
T ss_pred HHHHHHHhhhh-hhcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCC
Confidence 33334444421 3367999999999999999999999999988877777889999999999999999998765321 1
Q ss_pred C-CCCceeeeecCCcc-chHHHH-HHHHHH----HH-h---hhcC--CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHH
Q 019145 111 L-YKSRVLELNASDDR-GINVVR-TKIKTF----AA-V---AVGS--GQRRGGYPCPPYKIIILDEADSMTEDAQNALRR 177 (345)
Q Consensus 111 ~-~~~~~~~~~~~~~~-~~~~~~-~~~~~~----~~-~---~~~~--~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~ 177 (345)
+ .+..+++++|.... ....+. ..+... .. . .... ..+.+....+..++|+|||++.++...++.|++
T Consensus 118 ~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~ 197 (531)
T TIGR02902 118 FKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLK 197 (531)
T ss_pred cCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHH
Confidence 1 24678888875311 110010 111100 00 0 0000 011222334567899999999999999999999
Q ss_pred HHhhc----------------------------CCceEEEEe-cCcccccchhhhccceeEEecCCCHHHHHHHHHHHHH
Q 019145 178 TMETY----------------------------SKVTRFFFI-CNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN 228 (345)
Q Consensus 178 ~le~~----------------------------~~~~~ii~~-~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~ 228 (345)
.+++. +.++++|++ ++.+..+++++++||..+.|++++.+++..+++..++
T Consensus 198 ~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~ 277 (531)
T TIGR02902 198 VLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAE 277 (531)
T ss_pred HHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHH
Confidence 99752 123455554 4677889999999999999999999999999999999
Q ss_pred HhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhC----CCCCHHHHHHhhCCCC
Q 019145 229 EEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG----SSITSKDLISVSGVIP 281 (345)
Q Consensus 229 ~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~----~~it~~~v~~~~~~~~ 281 (345)
+.++.+++++++.|..++. |.|.+.|.++.++..+. ..|+.+|+..++....
T Consensus 278 k~~i~is~~al~~I~~y~~-n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~~~ 333 (531)
T TIGR02902 278 KIGINLEKHALELIVKYAS-NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAENGN 333 (531)
T ss_pred HcCCCcCHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCCcc
Confidence 9999999999999988776 89999999998876552 3599999999987543
No 57
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.93 E-value=4.6e-24 Score=189.28 Aligned_cols=200 Identities=20% Similarity=0.245 Sum_probs=156.7
Q ss_pred CCCccccccHHHHHHHHHHHHc-----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHH
Q 019145 58 KQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (345)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-----~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (345)
++|++++|+++.+..+..++.. +..++++|+||||||||++++++++++ +..+...+++.......+..
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~------~~~~~~~~~~~~~~~~~l~~ 74 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM------GVNLKITSGPALEKPGDLAA 74 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh------CCCEEEeccchhcCchhHHH
Confidence 4788999999999999988863 445679999999999999999999998 33444444332222222322
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC------------------CceEEEEecCc
Q 019145 133 KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------------------KVTRFFFICNY 194 (345)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~------------------~~~~ii~~~n~ 194 (345)
.+... ....+++|||++.++.+.++.|+.++++.. +...+|.+++.
T Consensus 75 ~l~~~----------------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~ 138 (305)
T TIGR00635 75 ILTNL----------------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTR 138 (305)
T ss_pred HHHhc----------------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCC
Confidence 22221 123599999999999998888988886433 22556777788
Q ss_pred ccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh----CCCCC
Q 019145 195 ISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF----GSSIT 269 (345)
Q Consensus 195 ~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~----~~~it 269 (345)
...+.+++.+||. .+.|.+++.+++.+++.+.+...++.+++++++.|++.++|++|.+.+.+..++.++ ...|+
T Consensus 139 ~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it 218 (305)
T TIGR00635 139 AGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIIN 218 (305)
T ss_pred ccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcC
Confidence 8889999999996 679999999999999999999999999999999999999999999999998876553 34589
Q ss_pred HHHHHHhhCC
Q 019145 270 SKDLISVSGV 279 (345)
Q Consensus 270 ~~~v~~~~~~ 279 (345)
.+.+.+.+..
T Consensus 219 ~~~v~~~l~~ 228 (305)
T TIGR00635 219 RDIALKALEM 228 (305)
T ss_pred HHHHHHHHHH
Confidence 8888877643
No 58
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.93 E-value=3.3e-23 Score=186.59 Aligned_cols=184 Identities=26% Similarity=0.390 Sum_probs=150.0
Q ss_pred CCccccccHHHHHHHHHHHHcCC---------CCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-----------------
Q 019145 59 QVKDVAHQEEVVRVLTNTLETAN---------CPH-MLFYGPPGTGKTTTALAIAHQLFGPEL----------------- 111 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~---------~~~-lll~G~~G~GKT~la~~la~~l~~~~~----------------- 111 (345)
.|++++||+++++.|++++..+. .++ +||+||+|+|||++|+.+++.++|...
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 57899999999999999999875 555 799999999999999999999988631
Q ss_pred CCCceeeeecC-CccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEE
Q 019145 112 YKSRVLELNAS-DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFF 190 (345)
Q Consensus 112 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~ 190 (345)
...++..+.+. ...+++.++..+......+ ..++++|+||||+|.++...++.|++.+|+++.++.+|+
T Consensus 83 ~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p----------~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL 152 (394)
T PRK07940 83 THPDVRVVAPEGLSIGVDEVRELVTIAARRP----------STGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLL 152 (394)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHHhCc----------ccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEE
Confidence 11223333222 2345666776665554332 224678999999999999999999999999999999999
Q ss_pred ecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHH
Q 019145 191 ICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYL 257 (345)
Q Consensus 191 ~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l 257 (345)
+|+.+..+.++++|||..+.|++|+.+++..++.. ..+ ++++.+..++..++|+++.++..+
T Consensus 153 ~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~---~~~--~~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 153 CAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVR---RDG--VDPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred EECChHHChHHHHhhCeEEECCCCCHHHHHHHHHH---hcC--CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 99999999999999999999999999999999863 224 678889999999999999887765
No 59
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.93 E-value=5e-24 Score=195.77 Aligned_cols=215 Identities=30% Similarity=0.431 Sum_probs=175.4
Q ss_pred hhhhhhCCCCCccccccHHHHHHHHHHHHc--------------------------------CCCC--cEEEeCCCCCCH
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLET--------------------------------ANCP--HMLFYGPPGTGK 95 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~--------------------------------~~~~--~lll~G~~G~GK 95 (345)
.|+++|+|+.|.|++|.+..-+.+..|++. ++++ .+||+||||.||
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 799999999999999999998888888853 1111 279999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHH
Q 019145 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNAL 175 (345)
Q Consensus 96 T~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l 175 (345)
||+|+.+|++. ++.++++|++|.++...+.+.+..........+ ...++.+|||||||.-++...+.+
T Consensus 340 TTLAHViAkqa------GYsVvEINASDeRt~~~v~~kI~~avq~~s~l~------adsrP~CLViDEIDGa~~~~Vdvi 407 (877)
T KOG1969|consen 340 TTLAHVIAKQA------GYSVVEINASDERTAPMVKEKIENAVQNHSVLD------ADSRPVCLVIDEIDGAPRAAVDVI 407 (877)
T ss_pred hHHHHHHHHhc------CceEEEecccccccHHHHHHHHHHHHhhccccc------cCCCcceEEEecccCCcHHHHHHH
Confidence 99999999998 999999999999999999988888665432210 124567999999999998888888
Q ss_pred HHHHhh------cC---------------CceEEEEecCcccc-cchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCC
Q 019145 176 RRTMET------YS---------------KVTRFFFICNYISR-IIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLN 233 (345)
Q Consensus 176 ~~~le~------~~---------------~~~~ii~~~n~~~~-l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 233 (345)
+.++.. ++ -...||++||.... -...|+..+.++.|.+++..-+.+.|+.+|..+|+.
T Consensus 408 lslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr 487 (877)
T KOG1969|consen 408 LSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMR 487 (877)
T ss_pred HHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCC
Confidence 888861 11 12458888987543 245566678899999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHh
Q 019145 234 LDAEALSTLSSISQGDLRRAITYLQGAARLFGSS---ITSKDLISV 276 (345)
Q Consensus 234 i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~---it~~~v~~~ 276 (345)
.+..++..|++.+.+|+|.++|.||.++...... +...++.+.
T Consensus 488 ~d~~aL~~L~el~~~DIRsCINtLQfLa~~~~r~ds~i~~~~i~a~ 533 (877)
T KOG1969|consen 488 ADSKALNALCELTQNDIRSCINTLQFLASNVDRRDSSISVKLICAK 533 (877)
T ss_pred CCHHHHHHHHHHhcchHHHHHHHHHHHHHhcccccccchhhhhhhh
Confidence 9999999999999999999999999999765432 555555433
No 60
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.93 E-value=7e-23 Score=179.80 Aligned_cols=249 Identities=20% Similarity=0.257 Sum_probs=172.3
Q ss_pred CCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC------------CCCceeeeecCC--
Q 019145 59 QVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------YKSRVLELNASD-- 123 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~------------~~~~~~~~~~~~-- 123 (345)
.|++++||++++..+...+..++.++ +||+||+|+||+++|.++++.+.|... ...++..+.+..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 47899999999999999999998766 799999999999999999999987641 122223332210
Q ss_pred ---------------------ccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc
Q 019145 124 ---------------------DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (345)
Q Consensus 124 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~ 182 (345)
...++.+++....+... +..+.++|+|||++|.++...++.|++.+|++
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~----------p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEP 151 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRP----------PLEAPRKVVVIEDAETMNEAAANALLKTLEEP 151 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccC----------cccCCceEEEEEchhhcCHHHHHHHHHHHhCC
Confidence 11233444443333222 23357899999999999999999999999998
Q ss_pred CCceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019145 183 SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (345)
Q Consensus 183 ~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~ 262 (345)
+ ++.+|++++.+.++.++++|||..+.|.+++.+++.+++......++.. .....++..++|+++.+++.++....
T Consensus 152 p-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~---~~~~~l~~~a~Gs~~~al~~l~~~~~ 227 (314)
T PRK07399 152 G-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILN---INFPELLALAQGSPGAAIANIEQLQS 227 (314)
T ss_pred C-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccch---hHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 8 7889999999999999999999999999999999999998765433222 23578899999999999998875432
Q ss_pred HhCCCCCHHHHHHhhC-CCCHHHHHHHHHHHH-cCCHHH---HHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 019145 263 LFGSSITSKDLISVSG-VIPPEVVEGLFAVCR-SGDFDL---ANKEVNNIIAEGYPASLLLSQVTLLLF 326 (345)
Q Consensus 263 ~~~~~it~~~v~~~~~-~~~~~~~~~l~~~~~-~~~~~~---a~~~l~~l~~~g~~~~~i~~~l~~~~~ 326 (345)
+..+.+..... ......+..+.+.+. ..+... .+.++..+..+......++..+...-+
T Consensus 228 -----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~e~Q~~~l~~~~~~~~~~~~~~~~~~~l~~a~~ 291 (314)
T PRK07399 228 -----IPPELLQKLEQPPKSPLEALELAKDISEELDIEQQLWLIDYLQQHYWQKTKNRQLLKQLEKLRK 291 (314)
T ss_pred -----HHHHHHHHHHhcccCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 12222222221 112334445555555 445444 344444444433333444444444433
No 61
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.93 E-value=2.4e-23 Score=186.06 Aligned_cols=191 Identities=24% Similarity=0.396 Sum_probs=154.8
Q ss_pred hhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCC-------------------
Q 019145 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYK------------------- 113 (345)
Q Consensus 54 ~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~~~------------------- 113 (345)
..+|.++.+++||+++++.|.+.+..++.+| +||+||+|+||+++|..+++.++|.....
T Consensus 12 ~~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~ 91 (365)
T PRK07471 12 APHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPV 91 (365)
T ss_pred CCCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChH
Confidence 3799999999999999999999999999998 79999999999999999999998754211
Q ss_pred ---------CceeeeecC---------CccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHH
Q 019145 114 ---------SRVLELNAS---------DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNAL 175 (345)
Q Consensus 114 ---------~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l 175 (345)
.++..+... ....++.++.....+... ...+.++|+||||+|.++...++.|
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~----------~~~~~~kVviIDead~m~~~aanaL 161 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLT----------AAEGGWRVVIVDTADEMNANAANAL 161 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcC----------cccCCCEEEEEechHhcCHHHHHHH
Confidence 122333221 112345555554443322 1234678999999999999999999
Q ss_pred HHHHhhcCCceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHH
Q 019145 176 RRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAIT 255 (345)
Q Consensus 176 ~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~ 255 (345)
++.+++++..+.+|++|+.+..+.+.+++||..+.|.+++.+++..++... +...+++.+..++..++|+++.++.
T Consensus 162 LK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~----~~~~~~~~~~~l~~~s~Gsp~~Al~ 237 (365)
T PRK07471 162 LKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAA----GPDLPDDPRAALAALAEGSVGRALR 237 (365)
T ss_pred HHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHh----cccCCHHHHHHHHHHcCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999653 3445566668899999999999998
Q ss_pred HHH
Q 019145 256 YLQ 258 (345)
Q Consensus 256 ~l~ 258 (345)
.++
T Consensus 238 ll~ 240 (365)
T PRK07471 238 LAG 240 (365)
T ss_pred Hhc
Confidence 875
No 62
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.91 E-value=1.6e-22 Score=179.79 Aligned_cols=183 Identities=27% Similarity=0.393 Sum_probs=145.8
Q ss_pred CCccccc-cHHHHHHHHHHHHcCCCCcE-EEeCCCCCCHHHHHHHHHHHhcCCCCC------------------CCceee
Q 019145 59 QVKDVAH-QEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFGPELY------------------KSRVLE 118 (345)
Q Consensus 59 ~~~~~~g-~~~~~~~l~~~l~~~~~~~l-ll~G~~G~GKT~la~~la~~l~~~~~~------------------~~~~~~ 118 (345)
.|+.++| |+.+++.|...+..++.+|. ||+||+|+||+++|+.+++.+.|.... ..++..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~ 82 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHL 82 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEE
Confidence 4667888 89999999999999999995 999999999999999999999876421 112322
Q ss_pred eec-CCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccc
Q 019145 119 LNA-SDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR 197 (345)
Q Consensus 119 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~ 197 (345)
+.. ....+.+.+++....+...+ ..+.++|+||||++.++...++.|++.+|+++.++.+|++++.+.+
T Consensus 83 i~~~~~~i~id~ir~l~~~~~~~~----------~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ 152 (329)
T PRK08058 83 VAPDGQSIKKDQIRYLKEEFSKSG----------VESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQ 152 (329)
T ss_pred eccccccCCHHHHHHHHHHHhhCC----------cccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHh
Confidence 222 12244566776666554332 2346789999999999999999999999999999999999999999
Q ss_pred cchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 019145 198 IIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258 (345)
Q Consensus 198 l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~ 258 (345)
+.++++|||..++|.+++.+++..++. ++| ++++....++..+ |+++.++..++
T Consensus 153 ll~TIrSRc~~i~~~~~~~~~~~~~L~----~~g--i~~~~~~~l~~~~-g~~~~A~~l~~ 206 (329)
T PRK08058 153 ILPTILSRCQVVEFRPLPPESLIQRLQ----EEG--ISESLATLLAGLT-NSVEEALALSE 206 (329)
T ss_pred CcHHHHhhceeeeCCCCCHHHHHHHHH----HcC--CChHHHHHHHHHc-CCHHHHHHHhc
Confidence 999999999999999999999988884 345 5566666666664 68988887664
No 63
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.91 E-value=7.1e-23 Score=168.52 Aligned_cols=166 Identities=29% Similarity=0.443 Sum_probs=133.3
Q ss_pred HHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCC--------------------CCCCceeeeecCCccchHH
Q 019145 71 RVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPE--------------------LYKSRVLELNASDDRGINV 129 (345)
Q Consensus 71 ~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~--------------------~~~~~~~~~~~~~~~~~~~ 129 (345)
+.|.+.+..+..++ +||+||+|+|||++++.+++.+.+.. ..++.++..+.. ..+.+.
T Consensus 2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~-~~~~~~ 80 (188)
T TIGR00678 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQ-SIKVDQ 80 (188)
T ss_pred hHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccC-cCCHHH
Confidence 45677888888876 79999999999999999999997751 111222222222 244566
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccceeE
Q 019145 130 VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKF 209 (345)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~~i 209 (345)
++..+..+...+ ..+.++++||||+|.++.+.++.|++++++++..+.+|++++...++.+++++||..+
T Consensus 81 i~~i~~~~~~~~----------~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~ 150 (188)
T TIGR00678 81 VRELVEFLSRTP----------QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVL 150 (188)
T ss_pred HHHHHHHHccCc----------ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEe
Confidence 666555543322 2356789999999999999999999999999999999999988889999999999999
Q ss_pred EecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHH
Q 019145 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRA 253 (345)
Q Consensus 210 ~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~ 253 (345)
.|.|++.+++..|+... | ++++++..+++.++||+|.+
T Consensus 151 ~~~~~~~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~~r~~ 188 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ----G--ISEEAAELLLALAGGSPGAA 188 (188)
T ss_pred eCCCCCHHHHHHHHHHc----C--CCHHHHHHHHHHcCCCcccC
Confidence 99999999999999765 4 78999999999999999864
No 64
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.90 E-value=5.4e-22 Score=177.87 Aligned_cols=185 Identities=39% Similarity=0.594 Sum_probs=151.9
Q ss_pred cccccHHHHHHHHHHHH-cCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC------------------CCCceeeeec
Q 019145 62 DVAHQEEVVRVLTNTLE-TANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------------YKSRVLELNA 121 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~-~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~------------------~~~~~~~~~~ 121 (345)
++++++.....+..+.. .+..++ +||+||||+|||++|.++++.+.|... ...+++++++
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 57788888888888887 566888 999999999999999999999987543 3468999999
Q ss_pred CCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchh
Q 019145 122 SDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEP 201 (345)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~ 201 (345)
++....+...+.+..+.......+ ..+++++++|||+|.++.+.++.+++.+|+++.++.+|++||.+.++.++
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~t 155 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESP------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPT 155 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCC------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccch
Confidence 987775444455555444432211 13567899999999999999999999999999999999999999999999
Q ss_pred hhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 019145 202 LASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263 (345)
Q Consensus 202 l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~ 263 (345)
+++||..+.|.|++......+.. ++++..+++.+.||+|.+++.++..+..
T Consensus 156 I~SRc~~i~f~~~~~~~~i~~~e-----------~~~l~~i~~~~~gd~r~~i~~lq~~~~~ 206 (325)
T COG0470 156 IRSRCQRIRFKPPSRLEAIAWLE-----------DQGLEEIAAVAEGDARKAINPLQALAAL 206 (325)
T ss_pred hhhcceeeecCCchHHHHHHHhh-----------ccchhHHHHHHHHHHHcCCCHHHHHHHh
Confidence 99999999999955544444442 7788999999999999999999998865
No 65
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.90 E-value=4.4e-22 Score=168.87 Aligned_cols=199 Identities=15% Similarity=0.155 Sum_probs=146.1
Q ss_pred CCcccc-c-cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHH
Q 019145 59 QVKDVA-H-QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (345)
Q Consensus 59 ~~~~~~-g-~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (345)
+|++++ | +..++..+..+......++++|+||+||||||+++++++++... .....++.++.... ...+..+.
T Consensus 20 ~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~-~~~v~y~~~~~~~~----~~~~~~~~ 94 (235)
T PRK08084 20 TFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR-GRAVGYVPLDKRAW----FVPEVLEG 94 (235)
T ss_pred CccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEEHHHHhh----hhHHHHHH
Confidence 677776 3 67788888888877776789999999999999999999987432 12222333322110 11111111
Q ss_pred HHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC--HHHHHHHHHHHhhcC--CceEEEEecCcc-cc---cchhhhccc--
Q 019145 137 FAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYS--KVTRFFFICNYI-SR---IIEPLASRC-- 206 (345)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~--~~~~~~l~~~le~~~--~~~~ii~~~n~~-~~---l~~~l~~r~-- 206 (345)
+ ...++|+|||++.+. +..+..|+.++.... ++..+|++++.+ .. +.+.+++|+
T Consensus 95 ~----------------~~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~ 158 (235)
T PRK08084 95 M----------------EQLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDW 158 (235)
T ss_pred h----------------hhCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhC
Confidence 1 123599999999985 344555666665432 334677777644 33 579999999
Q ss_pred -eeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHH---hCCCCCHHHHHHhhC
Q 019145 207 -AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL---FGSSITSKDLISVSG 278 (345)
Q Consensus 207 -~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~---~~~~it~~~v~~~~~ 278 (345)
.++.+.+|+.+++..++++.+...|+.+++++++.|+++++||+|.+++.++.+... .++.||.+.++++++
T Consensus 159 g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it~~~~k~~l~ 234 (235)
T PRK08084 159 GQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILK 234 (235)
T ss_pred CceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHc
Confidence 599999999999999999989889999999999999999999999999999887533 257799999988764
No 66
>PRK05629 hypothetical protein; Validated
Probab=99.90 E-value=2.6e-21 Score=171.92 Aligned_cols=232 Identities=11% Similarity=0.064 Sum_probs=193.4
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEc
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiD 162 (345)
+..+|||+.-.-.......+.+.+......++++..+++.+.. ...+.+ .... +..+++++|+|+
T Consensus 7 ~vyL~~G~e~~l~~~~~~~i~~~~~~~~~~~~n~~~~d~~e~~-~~~l~~----~~t~----------slF~~~rlV~v~ 71 (318)
T PRK05629 7 PVHLVLGDDEFLAERARLNIVHDIRSSMADSLQVTTLKASEVS-QGELLD----ALSP----------SLFGEDRVIVLT 71 (318)
T ss_pred ceEEEEeCHHHHHHHHHHHHHHHHhccCCCCCceEEeecccCC-HHHHHH----hhCc----------CccCCceEEEEe
Confidence 3469999987666667676777765666667889999877632 232222 1111 344677899999
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCceEEEEecCc---ccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHH
Q 019145 163 EADSMTEDAQNALRRTMETYSKVTRFFFICNY---ISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEAL 239 (345)
Q Consensus 163 E~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~---~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~ 239 (345)
+.+...+...+.+..++.++++.+.+|+++.. ..++.+.+...+.++.|.+++..++..|+..+++..|+.++++++
T Consensus 72 ~~~~~~~~~~~~l~~~l~~~~~~~~Lil~~~~~~~~kk~~K~l~k~~~~ve~~~~~~~~l~~wi~~~~~~~g~~i~~~A~ 151 (318)
T PRK05629 72 NMEQAGKEPTDLALSAAVDPSPGIYLIIMHSGGGRTKSMVPKLEKIAVVHEAAKLKPRERPGWVTQEFKNHGVRPTPDVV 151 (318)
T ss_pred ChHhcChhHHHHHHHHHhCCCCCeEEEEEcCCcchhhHHHHHHHhcceEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 98877666778889999988888777777642 233556788888899999999999999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHH
Q 019145 240 STLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLS 319 (345)
Q Consensus 240 ~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~ 319 (345)
+.+++.+++|+..+.+++++++.+.+++||.++|++++....+.++|+++|++..++...|+.++..|+..|++|..|++
T Consensus 152 ~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~iF~l~dAv~~g~~~~Al~~l~~l~~~g~~pi~il~ 231 (318)
T PRK05629 152 HALLEGVGSDLRELASAISQLVEDTQGNVTVEKVRAYYVGVAEVSGFDIADLACAGQVSKAVASTRRALQLGVSPVALAA 231 (318)
T ss_pred HHHHHHHCccHHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCccchHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Confidence 99999999999999999999987777889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 019145 320 QVTLLLFVLM 329 (345)
Q Consensus 320 ~l~~~~~~~~ 329 (345)
.|.++++++.
T Consensus 232 ~l~~~~r~l~ 241 (318)
T PRK05629 232 ALSMKVGQIA 241 (318)
T ss_pred HHHHHHHHHH
Confidence 9998876653
No 67
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.89 E-value=6.7e-21 Score=168.56 Aligned_cols=178 Identities=23% Similarity=0.328 Sum_probs=148.5
Q ss_pred cHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC------------------CCCceeeeecC---C
Q 019145 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------------YKSRVLELNAS---D 123 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~------------------~~~~~~~~~~~---~ 123 (345)
+....+.+.+.+..++.+| +||+||+|+||+++|.++|+.+.|... ...++..+.+. .
T Consensus 7 l~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (334)
T PRK07993 7 LRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKS 86 (334)
T ss_pred ChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccc
Confidence 5677888999999999888 589999999999999999999988532 22344445433 2
Q ss_pred ccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhh
Q 019145 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203 (345)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~ 203 (345)
..+++.+++..+.+...+ ..+.++|+|||++|.++....|.|++.+|++++++.||++|+.+..+.++++
T Consensus 87 ~I~idqiR~l~~~~~~~~----------~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 87 SLGVDAVREVTEKLYEHA----------RLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLR 156 (334)
T ss_pred cCCHHHHHHHHHHHhhcc----------ccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 356778888777665543 2357899999999999999999999999999999999999999999999999
Q ss_pred ccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 019145 204 SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258 (345)
Q Consensus 204 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~ 258 (345)
|||..+.|++++.+++..|+... ..++++.+..++..++|++..++..++
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~-----~~~~~~~a~~~~~la~G~~~~Al~l~~ 206 (334)
T PRK07993 157 SRCRLHYLAPPPEQYALTWLSRE-----VTMSQDALLAALRLSAGAPGAALALLQ 206 (334)
T ss_pred hccccccCCCCCHHHHHHHHHHc-----cCCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 99999999999999999999532 236677788889999999999988764
No 68
>PRK06893 DNA replication initiation factor; Validated
Probab=99.89 E-value=1e-21 Score=166.08 Aligned_cols=203 Identities=13% Similarity=0.178 Sum_probs=141.4
Q ss_pred hCCCCCccccccHHH--HHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHH
Q 019145 55 YRPKQVKDVAHQEEV--VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (345)
Q Consensus 55 ~~p~~~~~~~g~~~~--~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (345)
..+.+|+++++++.. ...+.........+.++|+|||||||||+++++++++... .....++..+...... ..
T Consensus 10 ~~~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~-~~~~~y~~~~~~~~~~----~~ 84 (229)
T PRK06893 10 IDDETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN-QRTAIYIPLSKSQYFS----PA 84 (229)
T ss_pred CCcccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEeeHHHhhhhh----HH
Confidence 456699999965433 2333333333344558999999999999999999997432 2233333332111111 11
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC--HHHHHHHHHHHhhcCC--ceEEEEecCc-ccc---cchhhhc
Q 019145 133 KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSK--VTRFFFICNY-ISR---IIEPLAS 204 (345)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~--~~~~~~l~~~le~~~~--~~~ii~~~n~-~~~---l~~~l~~ 204 (345)
.+..+ .+.++|+|||++.+. ......|+.+++.... ...+|++++. +.. ..+.+.+
T Consensus 85 ~~~~~----------------~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~s 148 (229)
T PRK06893 85 VLENL----------------EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLAS 148 (229)
T ss_pred HHhhc----------------ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHH
Confidence 11111 234699999999874 3344567777765433 3344566654 332 3488999
Q ss_pred cce---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHH--h-CCCCCHHHHHHhhC
Q 019145 205 RCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL--F-GSSITSKDLISVSG 278 (345)
Q Consensus 205 r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~--~-~~~it~~~v~~~~~ 278 (345)
|+. .+.+++|+.++...++++.+...++.++++++++|+++++||+|.+.+.++.+... . ++.||.+.|+++++
T Consensus 149 Rl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it~~~v~~~L~ 228 (229)
T PRK06893 149 RLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDLLDKASLQAQRKLTIPFVKEILG 228 (229)
T ss_pred HHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhc
Confidence 986 89999999999999999999999999999999999999999999999999877532 2 56799999988764
No 69
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=99.89 E-value=6.4e-21 Score=170.61 Aligned_cols=235 Identities=15% Similarity=0.152 Sum_probs=190.7
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEc
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiD 162 (345)
+.++|||+....+...++.+.+.+..+....+++..+++.+... +...+...... +..+++++|+|+
T Consensus 2 ~~yll~G~e~~l~~~~~~~l~~~~~~~~~~~fn~~~~d~~~~~~---~~~~~~~~~t~----------pff~~~rlVvv~ 68 (326)
T PRK07452 2 PIYLYWGEDDFALNQAIEKLIDQVVDPEWKSFNYSRLDGDDADQ---AIQALNEAMTP----------PFGSGGRLVWLK 68 (326)
T ss_pred CEEEEEcChHHHHHHHHHHHHHHhCCchhhhcchhhcCCccchH---HHHHHHHhcCC----------CCCCCceEEEEe
Confidence 45799999999999999999888766555567777777665322 22333332211 234577899999
Q ss_pred CCCCC---CHHHHHHHHHHHhhcCCceEEEEec-Ccc---cccchhhhccceeEEecCC---CHHHHHHHHHHHHHHhCC
Q 019145 163 EADSM---TEDAQNALRRTMETYSKVTRFFFIC-NYI---SRIIEPLASRCAKFRFKPL---SEEVMSSRVLHICNEEGL 232 (345)
Q Consensus 163 E~~~l---~~~~~~~l~~~le~~~~~~~ii~~~-n~~---~~l~~~l~~r~~~i~~~~~---~~~~~~~~l~~~~~~~~~ 232 (345)
+++.+ +++..+.|..+++++++.+.+|+++ +.. .+..+.+.+.+.+..|.++ +.+++..|++.++++.|+
T Consensus 69 ~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~g~ 148 (326)
T PRK07452 69 NSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLIPPWDTEGLKQLVERTAQELGV 148 (326)
T ss_pred CchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEecCCCcccHHHHHHHHHHHHHHcCC
Confidence 98655 5677889999999988888888764 322 3455667777778887665 467799999999999999
Q ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh---CCCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 019145 233 NLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIA 309 (345)
Q Consensus 233 ~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~---~~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~ 309 (345)
.+++++++.|++.+++|++.+.+++++++.++ +++||.++|.++++.. ..++|++++++..++...|+..++.|..
T Consensus 149 ~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~~-~~~if~l~dai~~~~~~~A~~~l~~L~~ 227 (326)
T PRK07452 149 KLTPEAAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALVSNT-TQNSLQLADALLQGNTGKALALLDDLLD 227 (326)
T ss_pred CCCHHHHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhccC-cCcHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999984 3469999999999876 5789999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHhh
Q 019145 310 EGYPASLLLSQVTLLLFVLMVQ 331 (345)
Q Consensus 310 ~g~~~~~i~~~l~~~~~~~~~~ 331 (345)
.|++|..|++.|.++++.++.-
T Consensus 228 ~g~~p~~il~~l~~~~r~l~~~ 249 (326)
T PRK07452 228 ANEPALRIVATLTGQFRTWLWV 249 (326)
T ss_pred CCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988643
No 70
>PRK07914 hypothetical protein; Reviewed
Probab=99.89 E-value=7e-21 Score=169.26 Aligned_cols=234 Identities=11% Similarity=0.066 Sum_probs=196.0
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcC-CCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEE
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFG-PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilii 161 (345)
+..+|+|+.-.........+.+.+.. +++.++++..+++.+... . . +...... +..+++++|+|
T Consensus 6 ~iYll~G~E~~l~~~~~~~i~~~~~~~~~~~~~n~~~~d~~~~~~-~---~-i~~~~t~----------plF~~rRlV~v 70 (320)
T PRK07914 6 PLHLVLGDEELLVERAVAAVLRSARQRAGTADVPVSRMRAGDVST-Y---E-LAELLSP----------SLFAEERVVVL 70 (320)
T ss_pred ceEEEEecHHHHHHHHHHHHHHHHhcCcCCCCCceEEeccccCCH-H---H-HHHhcCC----------CCCCCceEEEE
Confidence 34699999999999888998887754 356678888888866422 2 2 2222211 34567899999
Q ss_pred cCCCCCCHHHHHHHHHHHhhcCCceEEEEecCc---ccccchhhhccc-eeEEecCC-CHHHHHHHHHHHHHHhCCCCCH
Q 019145 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNY---ISRIIEPLASRC-AKFRFKPL-SEEVMSSRVLHICNEEGLNLDA 236 (345)
Q Consensus 162 DE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~---~~~l~~~l~~r~-~~i~~~~~-~~~~~~~~l~~~~~~~~~~i~~ 236 (345)
++...+.++..+.|..+++++++.+.+|++++. ..++.+.+.+.. .++.|.++ +..++..|+..+++..|+.+++
T Consensus 71 ~~~~~~~~~~~~~l~~~l~~~~~~t~lil~~~~~~~~kk~~K~L~k~g~~~v~~~~~~~~~~l~~wi~~~a~~~g~~i~~ 150 (320)
T PRK07914 71 EAAAEAGKDAAALILSAAADLPPGTVLVVVHSGGGRAKALANQLRKLGAEVHPCARITKAAERADFVRKEFRSLRVKVDD 150 (320)
T ss_pred eChHhccHHHHHHHHHHHhCCCCCeEEEEEecCCcchhHHHHHHHHCCCEEEecCCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 998777777778899999998887777776532 223456777665 48899998 9999999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHH
Q 019145 237 EALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASL 316 (345)
Q Consensus 237 ~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~ 316 (345)
++++.|++.++||+..+.+++++++.+.++.||.++|.++++...+.++|+++|++..++...|+..+..|...|++|..
T Consensus 151 ~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~vf~L~dAi~~g~~~~A~~~l~~L~~~ge~p~~ 230 (320)
T PRK07914 151 DTVTALLDAVGSDLRELASACSQLVADTGGAVDAAAVRRYHSGKAEVKGFDIADKAVAGDVAGAAEALRWAMMRGEPHVV 230 (320)
T ss_pred HHHHHHHHHHCccHHHHHHHHHHHhcCCCCCcCHHHHHHHcCCCeechHHHHHHHHHCCCHHHHHHHHHHHHHCCCchHH
Confidence 99999999999999999999999987667889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 019145 317 LLSQVTLLLFVLMVQ 331 (345)
Q Consensus 317 i~~~l~~~~~~~~~~ 331 (345)
|++.|.++|+++..-
T Consensus 231 il~~l~~~~r~L~~~ 245 (320)
T PRK07914 231 LADALAEAVHTIARV 245 (320)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998643
No 71
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.89 E-value=7.1e-21 Score=167.99 Aligned_cols=171 Identities=22% Similarity=0.287 Sum_probs=137.9
Q ss_pred HHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC------------------CCceeeeecC---CccchHHHH
Q 019145 74 TNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------------KSRVLELNAS---DDRGINVVR 131 (345)
Q Consensus 74 ~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~~------------------~~~~~~~~~~---~~~~~~~~~ 131 (345)
.+++..++.+| +||+||+|+|||++|+.+|+.+.|.... +.++..+... ...+++.++
T Consensus 13 ~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR 92 (328)
T PRK05707 13 QQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVR 92 (328)
T ss_pred HHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHH
Confidence 33455577777 7899999999999999999999885321 2244555432 335678888
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccceeEEe
Q 019145 132 TKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRF 211 (345)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~ 211 (345)
+....+...+. .+.++|+|||++|.++...++.|++.+|++++++.||++|+.+..+.++++|||..+.|
T Consensus 93 ~l~~~~~~~~~----------~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~ 162 (328)
T PRK05707 93 ELVSFVVQTAQ----------LGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQAC 162 (328)
T ss_pred HHHHHHhhccc----------cCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeC
Confidence 87766554432 24678999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 019145 212 KPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258 (345)
Q Consensus 212 ~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~ 258 (345)
.+++.+++..++.... ...+++.+..++..++|++..++..++
T Consensus 163 ~~~~~~~~~~~L~~~~----~~~~~~~~~~~l~la~Gsp~~A~~l~~ 205 (328)
T PRK05707 163 PLPSNEESLQWLQQAL----PESDERERIELLTLAGGSPLRALQLHE 205 (328)
T ss_pred CCcCHHHHHHHHHHhc----ccCChHHHHHHHHHcCCCHHHHHHHHC
Confidence 9999999999996543 134567777888999999999887654
No 72
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.88 E-value=2.3e-21 Score=179.83 Aligned_cols=211 Identities=24% Similarity=0.367 Sum_probs=143.9
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHHcCC-----CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeee
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN-----CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~-----~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 120 (345)
....||+++|+|.+.+|++.+++.+..++.|+.... ...++|+||+||||||+++.+++++ +..+.++.
T Consensus 4 ~~~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el------g~~v~Ew~ 77 (519)
T PF03215_consen 4 DESEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL------GFEVQEWI 77 (519)
T ss_pred cccCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh------CCeeEEec
Confidence 467799999999999999999999999999998632 1237999999999999999999998 45555543
Q ss_pred cCCc-----------c----chHHHHHHHHHHHHhhhcCCCC-----CCCCCCCCeEEEEEcCCCCCCH----HHHHHHH
Q 019145 121 ASDD-----------R----GINVVRTKIKTFAAVAVGSGQR-----RGGYPCPPYKIIILDEADSMTE----DAQNALR 176 (345)
Q Consensus 121 ~~~~-----------~----~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~iliiDE~~~l~~----~~~~~l~ 176 (345)
.+.. . ...........+..+....... .+.....+.+||+|+|+..... ...+.|.
T Consensus 78 np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~ 157 (519)
T PF03215_consen 78 NPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALR 157 (519)
T ss_pred CCCCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHH
Confidence 2211 0 0001112222333221111111 1112235678999999998643 2344555
Q ss_pred HHHhhcCC-ceEEEEec-------Ccc--------cccchhhhcc--ceeEEecCCCHHHHHHHHHHHHHHh-----CC-
Q 019145 177 RTMETYSK-VTRFFFIC-------NYI--------SRIIEPLASR--CAKFRFKPLSEEVMSSRVLHICNEE-----GL- 232 (345)
Q Consensus 177 ~~le~~~~-~~~ii~~~-------n~~--------~~l~~~l~~r--~~~i~~~~~~~~~~~~~l~~~~~~~-----~~- 232 (345)
+++..... .++||++- +.. ..+.+.+... +..|.|+|.+..-+++.|.+++..+ +.
T Consensus 158 ~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~ 237 (519)
T PF03215_consen 158 QYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGKN 237 (519)
T ss_pred HHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCc
Confidence 66654433 44455541 111 1355666664 4589999999999999999999987 32
Q ss_pred CC--CHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019145 233 NL--DAEALSTLSSISQGDLRRAITYLQGAAR 262 (345)
Q Consensus 233 ~i--~~~~~~~l~~~s~g~~r~~~~~l~~~~~ 262 (345)
.. ..++++.|++.++||+|.|++.||+++.
T Consensus 238 ~~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 238 KVPDKQSVLDSIAESSNGDIRSAINNLQFWCL 269 (519)
T ss_pred cCCChHHHHHHHHHhcCchHHHHHHHHHHHhc
Confidence 22 2456999999999999999999999996
No 73
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.88 E-value=4.1e-20 Score=161.86 Aligned_cols=178 Identities=21% Similarity=0.289 Sum_probs=145.4
Q ss_pred cHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC------------------CCCceeeeec--CCc
Q 019145 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------------YKSRVLELNA--SDD 124 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~------------------~~~~~~~~~~--~~~ 124 (345)
+....+.+.+.+..++.+| +||+||+|+||+++|..+++.+.|... .+.++..+.+ ...
T Consensus 7 ~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (325)
T PRK06871 7 LQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKD 86 (325)
T ss_pred hHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCC
Confidence 5677788999999999888 589999999999999999999988542 1224444543 234
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhc
Q 019145 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204 (345)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~ 204 (345)
.+++.+++..+.+...+ ..++++|+|||++|.++...+|+|++.+|++++++.+|++|+.+..+.++++|
T Consensus 87 I~id~iR~l~~~~~~~~----------~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S 156 (325)
T PRK06871 87 IGVDQVREINEKVSQHA----------QQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS 156 (325)
T ss_pred CCHHHHHHHHHHHhhcc----------ccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh
Confidence 56778887766655443 23567899999999999999999999999999999999999999999999999
Q ss_pred cceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 019145 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258 (345)
Q Consensus 205 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~ 258 (345)
||..+.|.+++.+++.++|.... ..++..+..++..++|.+..++..++
T Consensus 157 RC~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~~~~l~~g~p~~A~~~~~ 205 (325)
T PRK06871 157 RCQTWLIHPPEEQQALDWLQAQS-----SAEISEILTALRINYGRPLLALTFLE 205 (325)
T ss_pred hceEEeCCCCCHHHHHHHHHHHh-----ccChHHHHHHHHHcCCCHHHHHHHhh
Confidence 99999999999999999997643 23454567778899999988877664
No 74
>PRK05907 hypothetical protein; Provisional
Probab=99.88 E-value=6.3e-20 Score=160.47 Aligned_cols=232 Identities=13% Similarity=0.091 Sum_probs=182.5
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCC
Q 019145 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149 (345)
Q Consensus 70 ~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (345)
...+.+.++.+. +..+++|..- ....+.+.+.+..++. ..+++.+ .+.+. .+......
T Consensus 7 ~~~~~~~~~~~~-~~y~~~g~~~---~~~~~~l~~~~~~~~~-----~~fdg~~-~~~~~---ii~~aetl--------- 64 (311)
T PRK05907 7 FKDFSQYYEEKR-PAVIVIGSSS---EEDKDIFIELLVSGRK-----SEFDGQG-LLQQE---LLSWTEHF--------- 64 (311)
T ss_pred HHHHHHHHhcCC-ceEEEecCCc---HHHHHHHHHHhCCCcc-----ceecCCC-CCHHH---HHHHHhcC---------
Confidence 345556677777 7789999887 6566667666543322 2244443 23333 33333322
Q ss_pred CCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEE-EecC--cccccchhhhccceeE----EecCCCHHHHHHH
Q 019145 150 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFF-FICN--YISRIIEPLASRCAKF----RFKPLSEEVMSSR 222 (345)
Q Consensus 150 ~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii-~~~n--~~~~l~~~l~~r~~~i----~~~~~~~~~~~~~ 222 (345)
+..+.+++|++.+.+.++....+.|..+++++++.+.+| ++.+ ...++.+.+.. +..+ .|.++...++..|
T Consensus 65 -PfFaerRlV~v~~~~~~~~~~~~~L~~Yl~np~~~~~liv~~~~~d~~kkl~K~i~k-~~~v~~~~e~~~l~e~~L~~W 142 (311)
T PRK05907 65 -GLFASQETIGIYQAEKMSSSTQEFLIRYARNPNPHLTLFLFTTKQECFSSLSKKLSS-ALCLSLFGEWFADRDKRIAQL 142 (311)
T ss_pred -CcccCeEEEEEecccccccccHHHHHHHHhCCCCCeEEEEEEecccHHHHHHHHHhh-cceeccccccCCCCHHHHHHH
Confidence 345678899998887777667889999999988865555 4442 11223344443 4444 8999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhC--CCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHH
Q 019145 223 VLHICNEEGLNLDAEALSTLSSIS-QGDLRRAITYLQGAARLFG--SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDL 299 (345)
Q Consensus 223 l~~~~~~~~~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~~--~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~ 299 (345)
+..++++.|+.+++++++.+++.+ +||+..+.+++++++.+.+ +.||.++|++++..+.+.++|+++|++..++...
T Consensus 143 i~~~~~~~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g~~~~It~e~V~~lv~~s~e~nIF~L~dai~~~~~~~ 222 (311)
T PRK05907 143 LIQRAKELGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKESLEASDIQSFVVKKEAASLWKLRDALLRRDRVE 222 (311)
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCCCCeECHHHHHHHhcCcccccHHHHHHHHHccCHHH
Confidence 999999999999999999999999 6999999999999999864 5699999999999999999999999999999999
Q ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHH
Q 019145 300 ANKEVNNIIAE-GYPASLLLSQVTLLL 325 (345)
Q Consensus 300 a~~~l~~l~~~-g~~~~~i~~~l~~~~ 325 (345)
|++++..|..+ |++|..|++.|.+||
T Consensus 223 Al~il~~Ll~~~ge~p~~ILall~rQf 249 (311)
T PRK05907 223 GHSLLRSLLSDMGEDPLGIIAFLRSQC 249 (311)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 99999999999 999999999999999
No 75
>PRK08727 hypothetical protein; Validated
Probab=99.88 E-value=1e-20 Score=160.35 Aligned_cols=200 Identities=18% Similarity=0.226 Sum_probs=142.7
Q ss_pred CCccccc-cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHH
Q 019145 59 QVKDVAH-QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTF 137 (345)
Q Consensus 59 ~~~~~~g-~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (345)
+|+++++ .......+...........++|+||+||||||+++++++++... +..+..++..+. ...+...+..+
T Consensus 17 ~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~---~~~~~y~~~~~~--~~~~~~~~~~l 91 (233)
T PRK08727 17 RFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA---GRSSAYLPLQAA--AGRLRDALEAL 91 (233)
T ss_pred ChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEeHHHh--hhhHHHHHHHH
Confidence 7887775 44455555544433333458999999999999999999987432 223333332211 11111222221
Q ss_pred HHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC--HHHHHHHHHHHhhcCC-ceEEEEecCccc----ccchhhhcc---ce
Q 019145 138 AAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSK-VTRFFFICNYIS----RIIEPLASR---CA 207 (345)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~--~~~~~~l~~~le~~~~-~~~ii~~~n~~~----~l~~~l~~r---~~ 207 (345)
....+|+|||++.+. ...+..++.+++.... ...+|++++.+. .+.+.+.+| +.
T Consensus 92 ----------------~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~ 155 (233)
T PRK08727 92 ----------------EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCI 155 (233)
T ss_pred ----------------hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCc
Confidence 134599999999985 3455677777765432 345788876443 246899999 66
Q ss_pred eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH---HhCCCCCHHHHHHhhCC
Q 019145 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR---LFGSSITSKDLISVSGV 279 (345)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~---~~~~~it~~~v~~~~~~ 279 (345)
.+.|++|+.+++..++++++...++.+++++++.|++.++||+|.+++.++.+.. ..++.||.+.+++++..
T Consensus 156 ~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~~~~~~~~~~it~~~~~~~l~~ 230 (233)
T PRK08727 156 RIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGLVALLDRLDRESLAAKRRVTVPFLRRVLEE 230 (233)
T ss_pred eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999998887753 33667999988887654
No 76
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.87 E-value=1.7e-20 Score=177.31 Aligned_cols=274 Identities=18% Similarity=0.143 Sum_probs=176.6
Q ss_pred hhhhhhCCCCCccccccHHHHHHHHHHH----HcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcC----CCCCCCceeeee
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTL----ETANCPH-MLFYGPPGTGKTTTALAIAHQLFG----PELYKSRVLELN 120 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l----~~~~~~~-lll~G~~G~GKT~la~~la~~l~~----~~~~~~~~~~~~ 120 (345)
.+...|.| +.+.|++..+..|...+ ......+ ++|+|+||||||++++.+.+++.. .....+.+++++
T Consensus 747 vL~~DYVP---D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN 823 (1164)
T PTZ00112 747 MMQLDVVP---KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN 823 (1164)
T ss_pred HcCcccCC---CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe
Confidence 34445555 46778877776665554 4344444 479999999999999999988742 122236788999
Q ss_pred cCCccchHHHHHHHH-HHHHhhhcCCCC--------CC--CCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc---CCce
Q 019145 121 ASDDRGINVVRTKIK-TFAAVAVGSGQR--------RG--GYPCPPYKIIILDEADSMTEDAQNALRRTMETY---SKVT 186 (345)
Q Consensus 121 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~--------~~--~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~---~~~~ 186 (345)
|........+...+. .+....+..+.. .. ........||||||+|.|....++.|+.+++.. ...+
T Consensus 824 Cm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKL 903 (1164)
T PTZ00112 824 GMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKL 903 (1164)
T ss_pred CCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeE
Confidence 966444433322222 111110000000 00 001123459999999999876777777777643 2345
Q ss_pred EEEEecCc---ccccchhhhccce--eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH---hcCCCHHHHHHHHH
Q 019145 187 RFFFICNY---ISRIIEPLASRCA--KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSS---ISQGDLRRAITYLQ 258 (345)
Q Consensus 187 ~ii~~~n~---~~~l~~~l~~r~~--~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~---~s~g~~r~~~~~l~ 258 (345)
.+|.++|. +..+.+.+.+|+. .+.|+|++.+++.++|..++......+++++++.+++ ..+||+|.|++.|.
T Consensus 904 iLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILR 983 (1164)
T PTZ00112 904 VLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICR 983 (1164)
T ss_pred EEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHH
Confidence 66777765 4456788888886 5899999999999999999986544589999999998 67899999999999
Q ss_pred HHHHHh-CCCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHH--HHHHHc-CCCHHHHHHHHHHHHHHHHh
Q 019145 259 GAARLF-GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEV--NNIIAE-GYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 259 ~~~~~~-~~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l--~~l~~~-g~~~~~i~~~l~~~~~~~~~ 330 (345)
.++... +..|+.++|.++...... ..+.+++..-....-+-++ -.+... |..+ .-+..+...++.++.
T Consensus 984 rAgEikegskVT~eHVrkAleeiE~---srI~e~IktLPlHqKLVLlALIlLlk~tg~~~-i~TGEVYerYk~Lce 1055 (1164)
T PTZ00112 984 KAFENKRGQKIVPRDITEATNQLFD---SPLTNAINYLPWPFKMFLTCLIVELRMLNDFI-IPYKKVLNRYKVLVE 1055 (1164)
T ss_pred HHHhhcCCCccCHHHHHHHHHHHHh---hhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCc-eeHHHHHHHHHHHHH
Confidence 888665 346999999988764433 3355556555555433322 222233 3323 334555555555543
No 77
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.87 E-value=2.5e-20 Score=166.89 Aligned_cols=210 Identities=21% Similarity=0.304 Sum_probs=144.6
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHH-----cCCCCc--EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceee
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLE-----TANCPH--MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE 118 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~-----~~~~~~--lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~ 118 (345)
....+|.++|+|.+.+++..+++.+.+++.|+. ....++ +||+||+||||||+++.+++++ +..+.+
T Consensus 67 d~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel------g~~~~E 140 (634)
T KOG1970|consen 67 DEFELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL------GYQLIE 140 (634)
T ss_pred cccchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh------Cceeee
Confidence 567799999999999999999999999999998 444443 7999999999999999999998 555555
Q ss_pred eecCCc-------------cc--hHHHHHHHHHHHHhhhc--CCCCCCCCCCCCeEEEEEcCCCCCCHH-H----HHHHH
Q 019145 119 LNASDD-------------RG--INVVRTKIKTFAAVAVG--SGQRRGGYPCPPYKIIILDEADSMTED-A----QNALR 176 (345)
Q Consensus 119 ~~~~~~-------------~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~iliiDE~~~l~~~-~----~~~l~ 176 (345)
...+.. .. ...-...++.|...... .-...+.......++|+|||+...... . ++.|.
T Consensus 141 w~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL~ 220 (634)
T KOG1970|consen 141 WSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVLR 220 (634)
T ss_pred ecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhHHHHHHHHH
Confidence 542110 00 11112233334443322 112233344456679999999876432 2 33334
Q ss_pred HHHhhcCCceEEEEec-------Ccccccchhhhc--cceeEEecCCCHHHHHHHHHHHHHHhCCCCC------HHHHHH
Q 019145 177 RTMETYSKVTRFFFIC-------NYISRIIEPLAS--RCAKFRFKPLSEEVMSSRVLHICNEEGLNLD------AEALST 241 (345)
Q Consensus 177 ~~le~~~~~~~ii~~~-------n~~~~l~~~l~~--r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~------~~~~~~ 241 (345)
.+...+...+++|+|- |......+.+.. |...+.|+|....-+++.|..+|..++...+ ...++.
T Consensus 221 ~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~ 300 (634)
T KOG1970|consen 221 LYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVEL 300 (634)
T ss_pred HHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHH
Confidence 3333322233333331 112223344433 4558999999999999999999999887776 677999
Q ss_pred HHHhcCCCHHHHHHHHHHHH
Q 019145 242 LSSISQGDLRRAITYLQGAA 261 (345)
Q Consensus 242 l~~~s~g~~r~~~~~l~~~~ 261 (345)
++..++||+|.|++.||..+
T Consensus 301 i~~~s~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 301 ICQGSGGDIRSAINSLQLSS 320 (634)
T ss_pred HHHhcCccHHHHHhHhhhhc
Confidence 99999999999999999886
No 78
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.87 E-value=3.5e-21 Score=181.67 Aligned_cols=205 Identities=22% Similarity=0.335 Sum_probs=136.4
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-----EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeee-
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-----MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL- 119 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-----lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~- 119 (345)
....||++||+|..+++++|+++.+..+..|+.....+. ++|+||||+|||++++.+++.+. ..+.++
T Consensus 69 ~~~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~------~~~~Ew~ 142 (637)
T TIGR00602 69 DGNEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG------IQVQEWS 142 (637)
T ss_pred cccCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh------hHHHHHh
Confidence 455799999999999999999999999999998654322 89999999999999999999872 222111
Q ss_pred ec---C---C---------------ccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHH---HHHHH
Q 019145 120 NA---S---D---------------DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED---AQNAL 175 (345)
Q Consensus 120 ~~---~---~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~---~~~~l 175 (345)
++ . . ......+...+.... ......+.....+..||+|||++.+... .+..+
T Consensus 143 npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~----~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~l 218 (637)
T TIGR00602 143 NPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRAT----NKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEI 218 (637)
T ss_pred hhhhhcccccccccchhhhhccccccchHHHHHHHHHHHH----hhhcccccccCCceeEEEeecchhhchhhHHHHHHH
Confidence 00 0 0 001111222222211 0000001111246679999999776432 23333
Q ss_pred HH--HHhhcCCceEEEEecCcc-c--------c------cchhhhc--cceeEEecCCCHHHHHHHHHHHHHHhCCC---
Q 019145 176 RR--TMETYSKVTRFFFICNYI-S--------R------IIEPLAS--RCAKFRFKPLSEEVMSSRVLHICNEEGLN--- 233 (345)
Q Consensus 176 ~~--~le~~~~~~~ii~~~n~~-~--------~------l~~~l~~--r~~~i~~~~~~~~~~~~~l~~~~~~~~~~--- 233 (345)
+. +.+. ..+.+|++++.. . . +.+++++ ++.+|.|+|++..++.+.|.++++.++..
T Consensus 219 Lr~~~~e~--~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~ 296 (637)
T TIGR00602 219 LRWKYVSI--GRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGE 296 (637)
T ss_pred HHHHhhcC--CCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhcccc
Confidence 33 3332 344455554321 1 1 2368877 55689999999999999999999876432
Q ss_pred ---C-CHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019145 234 ---L-DAEALSTLSSISQGDLRRAITYLQGAAR 262 (345)
Q Consensus 234 ---i-~~~~~~~l~~~s~g~~r~~~~~l~~~~~ 262 (345)
+ +++++..|+..++||+|.|++.|+.++.
T Consensus 297 ~~~~p~~~~l~~I~~~s~GDiRsAIn~LQf~~~ 329 (637)
T TIGR00602 297 KIKVPKKTSVELLCQGCSGDIRSAINSLQFSSS 329 (637)
T ss_pred ccccCCHHHHHHHHHhCCChHHHHHHHHHHHHh
Confidence 2 5689999999999999999999999864
No 79
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.87 E-value=8.9e-20 Score=159.50 Aligned_cols=178 Identities=23% Similarity=0.333 Sum_probs=142.7
Q ss_pred ccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC---------------CCceeeee--cCC---
Q 019145 65 HQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY---------------KSRVLELN--ASD--- 123 (345)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~~---------------~~~~~~~~--~~~--- 123 (345)
-+...++.+...+..++.+| +||+||+|+||+++|.++++.+.|.... ..++..+. +.+
T Consensus 8 W~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~ 87 (319)
T PRK08769 8 WQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGD 87 (319)
T ss_pred cHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccc
Confidence 36778889999999999998 7999999999999999999999885421 12344342 211
Q ss_pred ----ccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccc
Q 019145 124 ----DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199 (345)
Q Consensus 124 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~ 199 (345)
...++.+++..+.+...+ ..++++|+|||++|.++....|+|++.+|++++++.||++++.+..+.
T Consensus 88 k~~~~I~idqIR~l~~~~~~~p----------~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lL 157 (319)
T PRK08769 88 KLRTEIVIEQVREISQKLALTP----------QYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLP 157 (319)
T ss_pred cccccccHHHHHHHHHHHhhCc----------ccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCc
Confidence 123556665555443332 234678999999999999999999999999999999999999999999
Q ss_pred hhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 019145 200 EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258 (345)
Q Consensus 200 ~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~ 258 (345)
++++|||..+.|.+++.+++..||.. .+ ++++.+..++..++|++..++..++
T Consensus 158 pTIrSRCq~i~~~~~~~~~~~~~L~~----~~--~~~~~a~~~~~l~~G~p~~A~~~~~ 210 (319)
T PRK08769 158 ATIRSRCQRLEFKLPPAHEALAWLLA----QG--VSERAAQEALDAARGHPGLAAQWLR 210 (319)
T ss_pred hHHHhhheEeeCCCcCHHHHHHHHHH----cC--CChHHHHHHHHHcCCCHHHHHHHhc
Confidence 99999999999999999999999953 34 4566677789999999998887663
No 80
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=99.87 E-value=1.2e-19 Score=163.52 Aligned_cols=235 Identities=16% Similarity=0.141 Sum_probs=187.2
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEE
Q 019145 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160 (345)
Q Consensus 81 ~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ili 160 (345)
..+.++|||+........+..+.+.+......++++..+++.+... .....+...... +..+++++|+
T Consensus 19 ~~~~yll~G~e~~li~~~~~~l~~~~~~~~~~~fn~~~~~~~e~~~--~~~~~~~~~~t~----------slF~~~rlVi 86 (343)
T PRK06585 19 KIRAVLLYGPDRGLVRERARRLAKSVVPDLDDPFAVVRLDGDDLDA--DPARLEDEANAI----------SLFGGRRLIW 86 (343)
T ss_pred CCeEEEEeCCchHHHHHHHHHHHHHhcCCCCCCcceeeccHHHhhc--CHHHHHHHHhCC----------CCCCCceEEE
Confidence 4455799999999999999999988755444456667666543210 122333333222 3345778999
Q ss_pred EcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcc---cccchhhh--ccceeEEecCCCHHHHHHHHHHHHHHhCCCCC
Q 019145 161 LDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI---SRIIEPLA--SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLD 235 (345)
Q Consensus 161 iDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~---~~l~~~l~--~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~ 235 (345)
|.+.+ +...+.|..+++.+++.+.+|+.+... .++.+.+. ..+..+.|.+++..++..|+..+++..|+.++
T Consensus 87 v~~~~---~~~~~~L~~~l~~~~~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~ 163 (343)
T PRK06585 87 VRAGS---KNLAAALKALLESPPGDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPCYADDERDLARLIDDELAEAGLRIT 163 (343)
T ss_pred EECCc---hhHHHHHHHHHcCCCCCcEEEEEcCCCCcccHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHHHHCCCCCC
Confidence 99653 345567888888877777777765432 22334332 23447889999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 019145 236 AEALSTLSSISQGDLRRAITYLQGAARLFG--SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYP 313 (345)
Q Consensus 236 ~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~--~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~ 313 (345)
+++++.+++.++||++.+.+++++++.+++ +.||.++|.++++...+.++|++++++..++...|+..+..|+.+|++
T Consensus 164 ~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~~~e~~if~l~dai~~~~~~~a~~~l~~ll~~g~~ 243 (343)
T PRK06585 164 PDARALLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASALSLDDAADAALAGDLAAFERALDRALAEGTA 243 (343)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCcccccHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999999974 469999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 019145 314 ASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 314 ~~~i~~~l~~~~~~~~~ 330 (345)
|..|++.|.+++++++.
T Consensus 244 p~~il~~L~~~~r~L~~ 260 (343)
T PRK06585 244 PVLILRAALRHFQRLHI 260 (343)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999853
No 81
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=7.5e-21 Score=162.29 Aligned_cols=201 Identities=21% Similarity=0.277 Sum_probs=146.9
Q ss_pred CCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (345)
.-+++++-|-++.++.+++.+.- ..+..+|||||||||||.+|+++|++. +..|+.+.++.
T Consensus 147 dvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T------~AtFIrvvgSE 220 (406)
T COG1222 147 DVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT------DATFIRVVGSE 220 (406)
T ss_pred CCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc------CceEEEeccHH
Confidence 34788999999999999998854 234459999999999999999999998 78899888764
Q ss_pred c------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHhh-----
Q 019145 124 D------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMET----- 181 (345)
Q Consensus 124 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le~----- 181 (345)
. .+...+++.+.-.... .+.||||||+|.+. .++|-.+++++.+
T Consensus 221 lVqKYiGEGaRlVRelF~lArek--------------aPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD 286 (406)
T COG1222 221 LVQKYIGEGARLVRELFELAREK--------------APSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD 286 (406)
T ss_pred HHHHHhccchHHHHHHHHHHhhc--------------CCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC
Confidence 2 3334455555443332 34699999999873 3567778877764
Q ss_pred cCCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHH-
Q 019145 182 YSKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYL- 257 (345)
Q Consensus 182 ~~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l- 257 (345)
+..++.+|++||.++-++|+|++ |++ .|+|+.|+.+...++++-..++..+. ++-.++.|++.+.|--..-+..+
T Consensus 287 ~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~dvd~e~la~~~~g~sGAdlkaic 365 (406)
T COG1222 287 PRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DDVDLELLARLTEGFSGADLKAIC 365 (406)
T ss_pred CCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cCcCHHHHHHhcCCCchHHHHHHH
Confidence 34689999999999999999998 555 89999999999999998888765542 22337778877755333333333
Q ss_pred HHHHHHh----CCCCCHHHHHHhhC
Q 019145 258 QGAARLF----GSSITSKDLISVSG 278 (345)
Q Consensus 258 ~~~~~~~----~~~it~~~v~~~~~ 278 (345)
..+..++ ...||.+|..+++.
T Consensus 366 tEAGm~AiR~~R~~Vt~~DF~~Av~ 390 (406)
T COG1222 366 TEAGMFAIRERRDEVTMEDFLKAVE 390 (406)
T ss_pred HHHhHHHHHhccCeecHHHHHHHHH
Confidence 3333333 34588888776654
No 82
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.87 E-value=1.2e-20 Score=154.09 Aligned_cols=205 Identities=24% Similarity=0.258 Sum_probs=145.1
Q ss_pred hhhCCCCCccccccHHHHH---HHHHHHHc------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC
Q 019145 53 EKYRPKQVKDVAHQEEVVR---VLTNTLET------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (345)
Q Consensus 53 ~~~~p~~~~~~~g~~~~~~---~l~~~l~~------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (345)
+-....+|+|++||+.++. -+.+.++. -.+.|+|||||||||||++|+++++++ +.+++.+.+..
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~------kvp~l~vkat~ 186 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA------KVPLLLVKATE 186 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc------CCceEEechHH
Confidence 4556668999999988874 34445544 246689999999999999999999998 77788777765
Q ss_pred ccch------HHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC------------HHHHHHHHHHHhhcC--
Q 019145 124 DRGI------NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT------------EDAQNALRRTMETYS-- 183 (345)
Q Consensus 124 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~------------~~~~~~l~~~le~~~-- 183 (345)
..+. ..+.+........ .+.|++|||+|.+. .+..|+|+.-++...
T Consensus 187 liGehVGdgar~Ihely~rA~~~--------------aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~en 252 (368)
T COG1223 187 LIGEHVGDGARRIHELYERARKA--------------APCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKEN 252 (368)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhc--------------CCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccC
Confidence 3332 2233333333222 34699999999873 235677777776443
Q ss_pred CceEEEEecCcccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Q 019145 184 KVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYLQGAA 261 (345)
Q Consensus 184 ~~~~ii~~~n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g-~~r~~~~~l~~~~ 261 (345)
..++.|.+||.+..+++++++|+. .++|..|+.++...++...+++.-++++.. ++.+++.++| +-|.+..-.-+.+
T Consensus 253 eGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g~SgRdikekvlK~a 331 (368)
T COG1223 253 EGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKGMSGRDIKEKVLKTA 331 (368)
T ss_pred CceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCCCCchhHHHHHHHHH
Confidence 457788899999999999999998 899999999999999999999877777665 7888877755 3333333332222
Q ss_pred HH-----hCCCCCHHHHHHhhC
Q 019145 262 RL-----FGSSITSKDLISVSG 278 (345)
Q Consensus 262 ~~-----~~~~it~~~v~~~~~ 278 (345)
.. ..+.|+.+|++.++.
T Consensus 332 Lh~Ai~ed~e~v~~edie~al~ 353 (368)
T COG1223 332 LHRAIAEDREKVEREDIEKALK 353 (368)
T ss_pred HHHHHHhchhhhhHHHHHHHHH
Confidence 11 123466666665544
No 83
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.87 E-value=4.3e-20 Score=156.69 Aligned_cols=200 Identities=17% Similarity=0.176 Sum_probs=149.7
Q ss_pred hCCCCCcccc--ccHHHHHHHHHHHHc-CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHH
Q 019145 55 YRPKQVKDVA--HQEEVVRVLTNTLET-ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (345)
Q Consensus 55 ~~p~~~~~~~--g~~~~~~~l~~~l~~-~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (345)
-+|.+|++++ ++......+..+... ....+++|+||+||||||+++++++++... +..++.+++.....
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~---~~~~~~i~~~~~~~----- 83 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG---GRNARYLDAASPLL----- 83 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEEehHHhHH-----
Confidence 3456888887 346777888887763 334569999999999999999999987332 34555555543211
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCC--ceEEEEecCccc---ccchhhhccc
Q 019145 132 TKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK--VTRFFFICNYIS---RIIEPLASRC 206 (345)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~--~~~ii~~~n~~~---~l~~~l~~r~ 206 (345)
.+. .....++|+|||++.++...+..|+.+++.... ...++++++... .+.+.+.+|+
T Consensus 84 -~~~----------------~~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~ 146 (227)
T PRK08903 84 -AFD----------------FDPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRL 146 (227)
T ss_pred -HHh----------------hcccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHH
Confidence 010 011346999999999998888889888875432 223555554332 2457777786
Q ss_pred ---eeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh---CCCCCHHHHHHhhCC
Q 019145 207 ---AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISVSGV 279 (345)
Q Consensus 207 ---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~---~~~it~~~v~~~~~~ 279 (345)
..+.++|++.++...++...+...++.+++++++.|++.+.||+|.+.+.++.+..++ +..||.+.++++++.
T Consensus 147 ~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~~~~~~~~~~i~~~~~~~~l~~ 225 (227)
T PRK08903 147 GWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRPVTLPLLREMLAQ 225 (227)
T ss_pred hcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhc
Confidence 5899999999999999999998999999999999999999999999999998876544 677999999998764
No 84
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.86 E-value=2.8e-20 Score=160.76 Aligned_cols=191 Identities=21% Similarity=0.239 Sum_probs=135.3
Q ss_pred CccccccHHHHHHHHHHHHc---------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC-CCCceeeeecCC
Q 019145 60 VKDVAHQEEVVRVLTNTLET---------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL-YKSRVLELNASD 123 (345)
Q Consensus 60 ~~~~~g~~~~~~~l~~~l~~---------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~-~~~~~~~~~~~~ 123 (345)
+++++|.+.+++.+.+.... +...+++|+||||||||++|+.+++.+..... ....++++++.+
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 56788988888666543211 23456899999999999999999998743221 233566665544
Q ss_pred ccchHH--HHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC--------HHHHHHHHHHHhhcCCceEEEEecC
Q 019145 124 DRGINV--VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------EDAQNALRRTMETYSKVTRFFFICN 193 (345)
Q Consensus 124 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~--------~~~~~~l~~~le~~~~~~~ii~~~n 193 (345)
..+... ....+...... +..+||||||+|.+. .+.++.|++.+++......+|+++.
T Consensus 85 l~~~~~g~~~~~~~~~~~~-------------a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~ 151 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKK-------------ALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGY 151 (261)
T ss_pred hhhhhccchHHHHHHHHHh-------------ccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCC
Confidence 221100 01111111111 123599999999875 4567889999998777777777764
Q ss_pred cc-----cccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh----------cCCCHHHHHHHH
Q 019145 194 YI-----SRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI----------SQGDLRRAITYL 257 (345)
Q Consensus 194 ~~-----~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~----------s~g~~r~~~~~l 257 (345)
.. ..+.+++.+|+. .+.|++++.+++.+++++++...+..++++++..+.+. +.||.|.+.|.+
T Consensus 152 ~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~ 231 (261)
T TIGR02881 152 SDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNII 231 (261)
T ss_pred cchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHH
Confidence 32 246789999995 79999999999999999999998999999999888543 369999999999
Q ss_pred HHHHHH
Q 019145 258 QGAARL 263 (345)
Q Consensus 258 ~~~~~~ 263 (345)
+.+...
T Consensus 232 e~a~~~ 237 (261)
T TIGR02881 232 EKAIRR 237 (261)
T ss_pred HHHHHH
Confidence 887643
No 85
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.86 E-value=5.3e-19 Score=161.00 Aligned_cols=273 Identities=18% Similarity=0.201 Sum_probs=176.8
Q ss_pred chhhhhhCCCCCccccccHHHHHHHHHHHHc----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC---CCCCceeeeec
Q 019145 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLET----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPE---LYKSRVLELNA 121 (345)
Q Consensus 49 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~----~~~~~lll~G~~G~GKT~la~~la~~l~~~~---~~~~~~~~~~~ 121 (345)
..+...|.|. +++|++..++.|..++.. +..++++|+||||||||++++.+++++.... .....++.++|
T Consensus 6 ~~l~~~~~p~---~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 6 DLLEPDYVPD---RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred hhCCCCCCCC---CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 3456778886 578998888877777653 4556799999999999999999999873211 11256788888
Q ss_pred CCccchH-HHHHHHHHHHHhhhcCCCCCCC--------------CCCCCeEEEEEcCCCCCCHH---HHHHHHHH--Hhh
Q 019145 122 SDDRGIN-VVRTKIKTFAAVAVGSGQRRGG--------------YPCPPYKIIILDEADSMTED---AQNALRRT--MET 181 (345)
Q Consensus 122 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~iliiDE~~~l~~~---~~~~l~~~--le~ 181 (345)
....+.. .+......+... +...+..+ ....+..+|+|||+|.+... ....|+++ ...
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~ 160 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGS--GEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGD 160 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhc--CCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccC
Confidence 6644432 233333332110 00000000 01234568999999999532 23344444 122
Q ss_pred cC-CceEEEEecCccc---ccchhhhccce--eEEecCCCHHHHHHHHHHHHHH--hCCCCCHHHHHHHHH---hcCCCH
Q 019145 182 YS-KVTRFFFICNYIS---RIIEPLASRCA--KFRFKPLSEEVMSSRVLHICNE--EGLNLDAEALSTLSS---ISQGDL 250 (345)
Q Consensus 182 ~~-~~~~ii~~~n~~~---~l~~~l~~r~~--~i~~~~~~~~~~~~~l~~~~~~--~~~~i~~~~~~~l~~---~s~g~~ 250 (345)
.+ .++.+|+++|.+. .+.+.+.+|+. .+.|+|++.+++..+++.+++. ....+++++++.+++ .++||+
T Consensus 161 ~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~ 240 (365)
T TIGR02928 161 LDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDA 240 (365)
T ss_pred CCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCH
Confidence 22 4577888887764 46777888874 7999999999999999999863 223478888777654 557999
Q ss_pred HHHHHHHHHHHHHh----CCCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHH--HHHHHHHHHcCCCHHHHHHHHHHH
Q 019145 251 RRAITYLQGAARLF----GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLA--NKEVNNIIAEGYPASLLLSQVTLL 324 (345)
Q Consensus 251 r~~~~~l~~~~~~~----~~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a--~~~l~~l~~~g~~~~~i~~~l~~~ 324 (345)
|.+++.+..++..+ ...||.++|.++..... .....+.+.+-+.... +..+..+...+.. ......+...
T Consensus 241 R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~---~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~-~~~~~~~~~~ 316 (365)
T TIGR02928 241 RKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIE---KDRLLELIRGLPTHSKLVLLAIANLAANDED-PFRTGEVYEV 316 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCC-CccHHHHHHH
Confidence 99999999887655 24599999998876542 2334556666555554 5555555554433 3455666666
Q ss_pred HHHHHh
Q 019145 325 LFVLMV 330 (345)
Q Consensus 325 ~~~~~~ 330 (345)
+..+..
T Consensus 317 y~~~~~ 322 (365)
T TIGR02928 317 YKEVCE 322 (365)
T ss_pred HHHHHH
Confidence 666543
No 86
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.86 E-value=8.4e-20 Score=159.45 Aligned_cols=175 Identities=16% Similarity=0.283 Sum_probs=141.7
Q ss_pred cHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-----------------CCCceeeeecC---Cc
Q 019145 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-----------------YKSRVLELNAS---DD 124 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~-----------------~~~~~~~~~~~---~~ 124 (345)
+....+.+.+.+..++.+| +||+||.|+||+++|..+++.+.|... ...++..+.+. ..
T Consensus 8 l~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~ 87 (319)
T PRK06090 8 LVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKS 87 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCc
Confidence 5677888899999999888 699999999999999999999988542 12345555442 23
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhc
Q 019145 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204 (345)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~ 204 (345)
.+++.+++........+ ..+.++|+|||++|.++....|+|++.+|++++++.+|++|+.+..+.++++|
T Consensus 88 I~vdqiR~l~~~~~~~~----------~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 88 ITVEQIRQCNRLAQESS----------QLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred CCHHHHHHHHHHHhhCc----------ccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 56677776554443322 23467899999999999999999999999999999999999999999999999
Q ss_pred cceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 019145 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258 (345)
Q Consensus 205 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~ 258 (345)
||..+.|++++.+++.+|+.. .|+. ....++..++|++..++..++
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~----~~~~----~~~~~l~l~~G~p~~A~~~~~ 203 (319)
T PRK06090 158 RCQQWVVTPPSTAQAMQWLKG----QGIT----VPAYALKLNMGSPLKTLAMMK 203 (319)
T ss_pred cceeEeCCCCCHHHHHHHHHH----cCCc----hHHHHHHHcCCCHHHHHHHhC
Confidence 999999999999999999953 4543 235667889999999887763
No 87
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.86 E-value=1.3e-20 Score=150.26 Aligned_cols=141 Identities=38% Similarity=0.615 Sum_probs=110.3
Q ss_pred ccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC-----------------CCceeeeecCCc--
Q 019145 65 HQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY-----------------KSRVLELNASDD-- 124 (345)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~~-----------------~~~~~~~~~~~~-- 124 (345)
||+.+++.|.+.+..++.++ +||+||+|+||+++|..+++.+.|.... ..++..++....
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 78999999999999999998 6999999999999999999999886543 456666666543
Q ss_pred -cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhh
Q 019145 125 -RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203 (345)
Q Consensus 125 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~ 203 (345)
...+.+++....+...+ ..+.++|+||||+|.++.+.+++|++.+|+++.++.+|++|+....+.++++
T Consensus 81 ~i~i~~ir~i~~~~~~~~----------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~ 150 (162)
T PF13177_consen 81 SIKIDQIREIIEFLSLSP----------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIR 150 (162)
T ss_dssp SBSHHHHHHHHHHCTSS-----------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHH
T ss_pred hhhHHHHHHHHHHHHHHH----------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHH
Confidence 56677776655543332 2256899999999999999999999999999999999999999999999999
Q ss_pred ccceeEEecCCC
Q 019145 204 SRCAKFRFKPLS 215 (345)
Q Consensus 204 ~r~~~i~~~~~~ 215 (345)
|||..+.|.+++
T Consensus 151 SRc~~i~~~~ls 162 (162)
T PF13177_consen 151 SRCQVIRFRPLS 162 (162)
T ss_dssp TTSEEEEE----
T ss_pred hhceEEecCCCC
Confidence 999999998874
No 88
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.86 E-value=1.3e-19 Score=172.88 Aligned_cols=232 Identities=21% Similarity=0.265 Sum_probs=166.5
Q ss_pred chhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC----CCCceeeeecCCc
Q 019145 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSRVLELNASDD 124 (345)
Q Consensus 49 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~----~~~~~~~~~~~~~ 124 (345)
.+..+.+||.+|++++|+...+..+...+......+++|+||||||||++|+.+++....... .+..++.+++...
T Consensus 142 ~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l 221 (615)
T TIGR02903 142 KSAQSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL 221 (615)
T ss_pred hHHhhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc
Confidence 467888999999999999999998888887777778999999999999999999877632111 2456788887542
Q ss_pred cc-hHHHHH-HH--------HHHHH--hhhc-CCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC--------
Q 019145 125 RG-INVVRT-KI--------KTFAA--VAVG-SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------- 183 (345)
Q Consensus 125 ~~-~~~~~~-~~--------~~~~~--~~~~-~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-------- 183 (345)
.. ...+.. .+ ..... ...+ .....+.......++||+||++.++...++.|++++++..
T Consensus 222 ~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~ 301 (615)
T TIGR02903 222 RWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYY 301 (615)
T ss_pred cCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeeccee
Confidence 10 111100 00 00000 0000 0011111222345699999999999999999999997531
Q ss_pred ------------------Cc--eEEEEe-cCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 019145 184 ------------------KV--TRFFFI-CNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTL 242 (345)
Q Consensus 184 ------------------~~--~~ii~~-~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l 242 (345)
.. +.+|.+ ++.+..+.+++++||..+.|.|++.+++..++++.+.+.++.+++++++.|
T Consensus 302 ~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L 381 (615)
T TIGR02903 302 DPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELI 381 (615)
T ss_pred ccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 11 233332 345667889999999999999999999999999999988888999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHh--------C----CCCCHHHHHHhhCCCC
Q 019145 243 SSISQGDLRRAITYLQGAARLF--------G----SSITSKDLISVSGVIP 281 (345)
Q Consensus 243 ~~~s~g~~r~~~~~l~~~~~~~--------~----~~it~~~v~~~~~~~~ 281 (345)
.+++. +.|++++.|+.+..+. + ..|+.++|.++++...
T Consensus 382 ~~ys~-~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 382 ARYTI-EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHCCC-cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCCc
Confidence 99876 6799999997665432 1 1488999999988654
No 89
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.86 E-value=4.3e-20 Score=156.79 Aligned_cols=201 Identities=16% Similarity=0.195 Sum_probs=147.8
Q ss_pred CCCCCcccc--ccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHH
Q 019145 56 RPKQVKDVA--HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (345)
Q Consensus 56 ~p~~~~~~~--g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (345)
.+.+|++++ ++...+..+..++......+++|+||+|||||++++.+++.+... +..++.+++...... ....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~---~~~~~~i~~~~~~~~--~~~~ 84 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER---GKSAIYLPLAELAQA--DPEV 84 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc---CCcEEEEeHHHHHHh--HHHH
Confidence 455777777 367788999999877777789999999999999999999987422 234555555432111 0111
Q ss_pred HHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHH--HHHHHHHHhhcC-CceEEEEecCccc-c--c-chhhhccc
Q 019145 134 IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA--QNALRRTMETYS-KVTRFFFICNYIS-R--I-IEPLASRC 206 (345)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~--~~~l~~~le~~~-~~~~ii~~~n~~~-~--l-~~~l~~r~ 206 (345)
+... ...++|+|||++.++... ++.|..+++... ....+|++++... . . .+.+.+|+
T Consensus 85 ~~~~----------------~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 85 LEGL----------------EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred Hhhc----------------ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 1110 123599999999997633 777887776532 2346777776432 2 2 26777776
Q ss_pred e---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH---HhCCCCCHHHHHHhh
Q 019145 207 A---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR---LFGSSITSKDLISVS 277 (345)
Q Consensus 207 ~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~---~~~~~it~~~v~~~~ 277 (345)
. .+.+++++.++...+++..+.+.++.+++++++.|++.++||+|.+.+.++.+.. ..++.||.+.+.+++
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~~~~~~~~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITIPFVKEVL 225 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHh
Confidence 3 7999999999999999999888899999999999999999999999999876654 336779999888764
No 90
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=99.85 E-value=6.5e-19 Score=157.11 Aligned_cols=237 Identities=18% Similarity=0.172 Sum_probs=185.9
Q ss_pred HHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCC
Q 019145 72 VLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150 (345)
Q Consensus 72 ~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (345)
.+...++.+..++ .+|+|..-.-....+..+.+.+..++. ..+ +..+. .+ +.+.+......
T Consensus 5 ~l~~~lk~~~l~~vyll~GeE~yli~~~~~~i~~~~~~~~~-~~~-~~~~~---~~---~~~i~~~~~t~---------- 66 (328)
T PRK08487 5 ELDTLLKQNKLPNAFLLYGEDEFQIELYAKKISEKFKPENE-LKT-LYFDE---YD---FEQAKDFLSQS---------- 66 (328)
T ss_pred HHHHHHhcCCCCceEEEecCchhHHHHHHHHHHHHhcCchH-hhh-hchhh---cc---HHHHHHHHhcc----------
Confidence 5566677776655 599999999999999999887643322 111 22221 22 23333333322
Q ss_pred CCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCccc---ccchhhhcc--ceeEEecCCCHHHHHHHHHH
Q 019145 151 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS---RIIEPLASR--CAKFRFKPLSEEVMSSRVLH 225 (345)
Q Consensus 151 ~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~---~l~~~l~~r--~~~i~~~~~~~~~~~~~l~~ 225 (345)
+..+++++|+|.+...+.....+.|..+++++++.+.+|++.+... ++.+.+... +..+.|.+++..++..|+..
T Consensus 67 plF~~~rlViv~~~~~~~~~~~~~L~~~l~~~~~~~~lv~~~~~~~k~kkl~k~~~~~k~~~~v~~~~~~~~~l~~~i~~ 146 (328)
T PRK08487 67 SLFGGKNLLIIKLDKKIPKKELKLLIELCEKNSDNYFIIELYGADSKTKDIEKLFQKKDEAVFVRFFKPNAREALELLQE 146 (328)
T ss_pred cccCCceEEEEecccccCHHHHHHHHHHHhcCCCCEEEEEecCCcchhHHHHHHhccCCCceEEEeeCCCHHHHHHHHHH
Confidence 3446778999998877776677889999998777666665443332 222333322 45789999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHH
Q 019145 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVN 305 (345)
Q Consensus 226 ~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~ 305 (345)
++++.|+.+++++++.+++.+++|+..+.+++++++.+.+ .||.++|.+++....+.++|++++++..++ .+...+.
T Consensus 147 ~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~~-~It~edV~~~v~~~~e~~vF~l~dai~~g~--~a~~~l~ 223 (328)
T PRK08487 147 RAKELGLDIDQNALNHLYFIHNEDLALAANELEKLAILNE-PITLKDIQELVFGLGSVSFEDFFEKLLNKK--DIKDDLE 223 (328)
T ss_pred HHHHhCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHhcC-CCCHHHHHHHhcccccccHHHHHHHHHCCC--cHHHHHH
Confidence 9999999999999999999999999999999999999865 799999999999999999999999999999 5788999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHH
Q 019145 306 NIIAEGYPASLLLSQVTLLLFVLM 329 (345)
Q Consensus 306 ~l~~~g~~~~~i~~~l~~~~~~~~ 329 (345)
.|..+|++|..|++.|.++|+++.
T Consensus 224 ~L~~~g~~pi~Il~~L~r~~~~L~ 247 (328)
T PRK08487 224 KLLEEGFNEIALLNSLERFFYQLF 247 (328)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999985
No 91
>PRK06620 hypothetical protein; Validated
Probab=99.85 E-value=2.6e-19 Score=149.16 Aligned_cols=190 Identities=13% Similarity=0.153 Sum_probs=131.8
Q ss_pred hhhhhhCCCCCcccc-c--cHHHHHHHHHHHHcCC--C--CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 50 PWVEKYRPKQVKDVA-H--QEEVVRVLTNTLETAN--C--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~-g--~~~~~~~l~~~l~~~~--~--~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
++..+| +|++++ | +..+...+..|..... + +.++||||||+||||+++++++.. +..++ ...
T Consensus 8 ~~~~~~---tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~------~~~~~--~~~ 76 (214)
T PRK06620 8 TTSSKY---HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLS------NAYII--KDI 76 (214)
T ss_pred CCCCCC---CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhcc------CCEEc--chh
Confidence 344444 556555 4 4566777777775321 2 458999999999999999988775 22111 110
Q ss_pred CccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCccc---ccc
Q 019145 123 DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS---RII 199 (345)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~---~l~ 199 (345)
. .. .... ...++++|||+|.+.....-.+++.+.+. + ..++++++.+. .+
T Consensus 77 ~-~~--------~~~~---------------~~~d~lliDdi~~~~~~~lf~l~N~~~e~-g-~~ilits~~~p~~l~l- 129 (214)
T PRK06620 77 F-FN--------EEIL---------------EKYNAFIIEDIENWQEPALLHIFNIINEK-Q-KYLLLTSSDKSRNFTL- 129 (214)
T ss_pred h-hc--------hhHH---------------hcCCEEEEeccccchHHHHHHHHHHHHhc-C-CEEEEEcCCCccccch-
Confidence 0 00 0000 12359999999977533333333333332 2 24556654222 24
Q ss_pred hhhhccce---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHH---hCCCCCHHHH
Q 019145 200 EPLASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL---FGSSITSKDL 273 (345)
Q Consensus 200 ~~l~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~---~~~~it~~~v 273 (345)
+.+++|+. ++.+++|+.+++..++++.+...++.+++++++.|+++++||+|.+++.++.+... .++.||.+.+
T Consensus 130 ~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it~~~~ 209 (214)
T PRK06620 130 PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKITISLV 209 (214)
T ss_pred HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 89999998 89999999999999999999989999999999999999999999999999887543 2556999988
Q ss_pred HHhh
Q 019145 274 ISVS 277 (345)
Q Consensus 274 ~~~~ 277 (345)
++++
T Consensus 210 ~~~l 213 (214)
T PRK06620 210 KEVL 213 (214)
T ss_pred HHHh
Confidence 8764
No 92
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.84 E-value=7.7e-19 Score=154.91 Aligned_cols=172 Identities=22% Similarity=0.279 Sum_probs=129.7
Q ss_pred cHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC-------------------CCceeeeecC---
Q 019145 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY-------------------KSRVLELNAS--- 122 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~~-------------------~~~~~~~~~~--- 122 (345)
+...++.+... .++.+| +||+||+|+||+++|..+++.++|.... ..++..+...
T Consensus 6 ~~~~~~~l~~~--~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~ 83 (342)
T PRK06964 6 QTDDWNRLQAL--RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALA 83 (342)
T ss_pred cHHHHHHHHHh--cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccc
Confidence 34455555553 346666 6899999999999999999999885421 1233333221
Q ss_pred --------------------------CccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHH
Q 019145 123 --------------------------DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALR 176 (345)
Q Consensus 123 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~ 176 (345)
...+++.+++........ +..++++|+|||++|.++....|.|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~----------~~~~~~kV~iI~~ae~m~~~AaNaLL 153 (342)
T PRK06964 84 AEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVG----------THRGGARVVVLYPAEALNVAAANALL 153 (342)
T ss_pred ccccccccccccchhhcccccccccccccCHHHHHHHHHHhccC----------CccCCceEEEEechhhcCHHHHHHHH
Confidence 123445666555443322 22356789999999999999999999
Q ss_pred HHHhhcCCceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHH
Q 019145 177 RTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITY 256 (345)
Q Consensus 177 ~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~ 256 (345)
+.+|++++++.||++|+.+..+.++++|||..+.|.+++.+++.+++... ++ ++. ..++..++|++..++..
T Consensus 154 KtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~----~~--~~~--~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 154 KTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ----GV--ADA--DALLAEAGGAPLAALAL 225 (342)
T ss_pred HHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc----CC--ChH--HHHHHHcCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999542 43 232 33567789999988876
Q ss_pred H
Q 019145 257 L 257 (345)
Q Consensus 257 l 257 (345)
+
T Consensus 226 ~ 226 (342)
T PRK06964 226 A 226 (342)
T ss_pred H
Confidence 5
No 93
>PRK05642 DNA replication initiation factor; Validated
Probab=99.84 E-value=4.8e-19 Score=150.11 Aligned_cols=200 Identities=15% Similarity=0.159 Sum_probs=141.0
Q ss_pred CCCcccc-cc-HHHHHHHHHHHHcC---CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHH
Q 019145 58 KQVKDVA-HQ-EEVVRVLTNTLETA---NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (345)
Q Consensus 58 ~~~~~~~-g~-~~~~~~l~~~l~~~---~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (345)
.+|++++ |. ..++..+..+.... ..++++|+||+|+||||+++++++++... +..++.++..+... ....
T Consensus 16 ~tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~---~~~v~y~~~~~~~~--~~~~ 90 (234)
T PRK05642 16 ATFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQR---GEPAVYLPLAELLD--RGPE 90 (234)
T ss_pred ccccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEeeHHHHHh--hhHH
Confidence 3788777 43 33444555554331 12458999999999999999999987322 23444444432111 0111
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC--HHHHHHHHHHHhhcCC-ceEEEEecCccc----ccchhhhcc
Q 019145 133 KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSK-VTRFFFICNYIS----RIIEPLASR 205 (345)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~--~~~~~~l~~~le~~~~-~~~ii~~~n~~~----~l~~~l~~r 205 (345)
.++.+ .+.++|+|||++.+. ...+..|+.+++.... ...+|++++... ...+.+.+|
T Consensus 91 ~~~~~----------------~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SR 154 (234)
T PRK05642 91 LLDNL----------------EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSR 154 (234)
T ss_pred HHHhh----------------hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHH
Confidence 11111 123599999999875 3446678888876543 456777775422 236899999
Q ss_pred c---eeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh---CCCCCHHHHHHhhC
Q 019145 206 C---AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISVSG 278 (345)
Q Consensus 206 ~---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~---~~~it~~~v~~~~~ 278 (345)
+ .++.+.+|+.++...+++..+...++.+++++++.|++.++||+|.+.+.++.+...+ +++||.+.++++++
T Consensus 155 l~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it~~~~~~~L~ 233 (234)
T PRK05642 155 LTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLERLDQASLQAQRKLTIPFLKETLG 233 (234)
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHhc
Confidence 8 5899999999999999998888889999999999999999999999999998775432 57799999988764
No 94
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=99.84 E-value=1.4e-18 Score=154.17 Aligned_cols=218 Identities=16% Similarity=0.154 Sum_probs=179.6
Q ss_pred HHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-HHHHHHHHH
Q 019145 99 ALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-EDAQNALRR 177 (345)
Q Consensus 99 a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-~~~~~~l~~ 177 (345)
+..+.+.+..+.+.+.+++.+++.+. ..+.+.+.+.. . +..+++++++|++++.+. +...+.|..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~~l~~~~~~---~----------slf~~~kliii~~~~~~~~~~~~~~L~~ 69 (302)
T TIGR01128 4 ADAIRAAALAQGFDEFNVFRIDGEEF-DWNQLLEEAQT---L----------PLFSERRLVELRNPEGKPGAKGLKALEE 69 (302)
T ss_pred HHHHHHHHHhCCCchheeeeeccCCC-CHHHHHHHhhc---c----------CcccCCeEEEEECCCCCCCHHHHHHHHH
Confidence 45555555555566778888887753 33333222222 1 223466899999999986 466789999
Q ss_pred HHhhcCCceEEEEecCcccc---cchhhh--ccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHH
Q 019145 178 TMETYSKVTRFFFICNYISR---IIEPLA--SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRR 252 (345)
Q Consensus 178 ~le~~~~~~~ii~~~n~~~~---l~~~l~--~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~ 252 (345)
+++++++++.+|++++..+. +.+.+. ++|.++.|.+++..++..++...++..|+.+++++++.+++.++||++.
T Consensus 70 ~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~d~~~ 149 (302)
T TIGR01128 70 YLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKTPKEQELPRWIQARLKKLGLRIDPDAVQLLAELVEGNLLA 149 (302)
T ss_pred HHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCcHHHH
Confidence 99998888888888764332 223343 3899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 253 AITYLQGAARLFG-SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 253 ~~~~l~~~~~~~~-~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
+.+++++++.+.+ +.||.++|...+....+..+|++++++..++...++..++.|...|++|..|++.|.+++++++.
T Consensus 150 l~~el~KL~~~~~~~~It~e~I~~~~~~~~~~~if~l~dal~~~~~~~a~~~l~~l~~~~~~~~~il~~l~~~~~~L~~ 228 (302)
T TIGR01128 150 IAQELEKLALYAPDGKITLEDVEEAVSDSARFNVFDLTDALLEGKAARALRILKGLLGEGEEPLILLALLQRQLRLLLQ 228 (302)
T ss_pred HHHHHHHHHhhCCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999998863 57999999999999999999999999999999999999999999999999999999999998864
No 95
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=99.83 E-value=4.9e-18 Score=153.19 Aligned_cols=245 Identities=18% Similarity=0.162 Sum_probs=189.9
Q ss_pred HHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCC
Q 019145 72 VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGY 151 (345)
Q Consensus 72 ~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (345)
.+...++.+-.+.++|+|+.-.-+...+..+.+.+..+...+.++..+++.+. +...+.+.+.. . +
T Consensus 7 ~~~~~~~~~~~~~~li~G~d~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~-~~~~l~~~~~t---~----------~ 72 (340)
T PRK05574 7 QLEKQLKKGLAPLYLLYGDEPLLLQEAKDAIRAAARAQGFDERNVFTFDGSET-DWDDVLEACQS---L----------P 72 (340)
T ss_pred HHHHHHhCCCCceEEEEcCcHHHHHHHHHHHHHHHHcCCCceeeEEEeecCCC-CHHHHHHHhhc---c----------C
Confidence 44455665533446999998777777778887766444555667777777643 33333222222 2 2
Q ss_pred CCCCeEEEEEcCCCCCCHH----HHHHHHHHHhhcCC--ceEEEEecCcc---ccc---chhhhccceeEEecCCCHHHH
Q 019145 152 PCPPYKIIILDEADSMTED----AQNALRRTMETYSK--VTRFFFICNYI---SRI---IEPLASRCAKFRFKPLSEEVM 219 (345)
Q Consensus 152 ~~~~~~iliiDE~~~l~~~----~~~~l~~~le~~~~--~~~ii~~~n~~---~~l---~~~l~~r~~~i~~~~~~~~~~ 219 (345)
..+++++|+|++++.+... ....+..++ ++++ ...+++.++.. .++ .+.+.+++..+.|.+++..++
T Consensus 73 lF~~~klvii~~~~~l~~~~~~~~l~~l~~~l-~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~~~~~~~~~~~~~~~~~ 151 (340)
T PRK05574 73 LFSDRKLVELRLPEFLTGAKGEKALKRLEAYL-NPLPHPDLLLIVRLPKLDKAKKKSAWFKALKKKAVVVEAQPPKEAEL 151 (340)
T ss_pred ccccCeEEEEECCCCCCchhHHHHHHHHHHhc-cCCCCCcEEEEEECCcCCHHHHhhHHHHHHHhCceEEEcCCCCHHHH
Confidence 3356789999999998654 333444555 3333 34445554432 223 567778889999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhC-CCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHH
Q 019145 220 SSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG-SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFD 298 (345)
Q Consensus 220 ~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~-~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~ 298 (345)
..|+...++..|+.+++++++.|++.++||++.+.+++++++.+++ +.||.++|.++++...+.++|++++++..++..
T Consensus 152 ~~~i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~~~~~~~f~l~dai~~~~~~ 231 (340)
T PRK05574 152 PQWIQQRLKQQGLQIDAAALQLLAERVEGNLLALAQELEKLALLYPDGKITLEDVEEAVPDSARFDVFDLVDAILAGKIK 231 (340)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHH
Confidence 9999999999999999999999999999999999999999999873 449999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 019145 299 LANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQ 331 (345)
Q Consensus 299 ~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~ 331 (345)
.++..+..|..+|++|..|++.|.+++++++.-
T Consensus 232 ~a~~~l~~l~~~~~~~~~il~~l~~~~~~l~~~ 264 (340)
T PRK05574 232 RALRILDGLRLEGEEPIKLLAALQREFRLLLQL 264 (340)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988643
No 96
>CHL00181 cbbX CbbX; Provisional
Probab=99.83 E-value=9.4e-19 Score=152.14 Aligned_cols=190 Identities=23% Similarity=0.217 Sum_probs=133.8
Q ss_pred ccccccHHHHHHHHHHHHc---------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCC-CCceeeeecCCc
Q 019145 61 KDVAHQEEVVRVLTNTLET---------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELY-KSRVLELNASDD 124 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~---------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~-~~~~~~~~~~~~ 124 (345)
++++|.+.+++.+.+++.. ....+++|+||||||||++|+++++.+...... ...+++++..+.
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 4688988888766555311 123458999999999999999999987432221 224666654321
Q ss_pred cchHH--HHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCC---------CHHHHHHHHHHHhhcCCceEEEEecC
Q 019145 125 RGINV--VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM---------TEDAQNALRRTMETYSKVTRFFFICN 193 (345)
Q Consensus 125 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l---------~~~~~~~l~~~le~~~~~~~ii~~~n 193 (345)
.+... ........... +..++|||||++.+ ..+.++.|+..+++....+++|++++
T Consensus 103 ~~~~~g~~~~~~~~~l~~-------------a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~ 169 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKK-------------AMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGY 169 (287)
T ss_pred HHHHhccchHHHHHHHHH-------------ccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 11000 00000111110 12359999999986 45678899999998777788888775
Q ss_pred ccc-----ccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh--------cCCCHHHHHHHHHH
Q 019145 194 YIS-----RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI--------SQGDLRRAITYLQG 259 (345)
Q Consensus 194 ~~~-----~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~--------s~g~~r~~~~~l~~ 259 (345)
... ...|.+.+|+. .+.|++++.+++..++..++++.+..+++++...+.++ ..||.|.+.+.++.
T Consensus 170 ~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~ 249 (287)
T CHL00181 170 KDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDR 249 (287)
T ss_pred cHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 321 23589999998 89999999999999999999999999999988777664 24899999999988
Q ss_pred HHHH
Q 019145 260 AARL 263 (345)
Q Consensus 260 ~~~~ 263 (345)
+...
T Consensus 250 ~~~~ 253 (287)
T CHL00181 250 ARMR 253 (287)
T ss_pred HHHH
Confidence 7754
No 97
>PRK09087 hypothetical protein; Validated
Probab=99.82 E-value=4.8e-19 Score=148.82 Aligned_cols=189 Identities=16% Similarity=0.174 Sum_probs=135.5
Q ss_pred CCccccc---cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHH
Q 019145 59 QVKDVAH---QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (345)
Q Consensus 59 ~~~~~~g---~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (345)
+|++++. +..+...+.++. ....+.++|+||+|+||||+++++++.. ...+ ++... ...+ .+.
T Consensus 19 ~~~~Fi~~~~N~~a~~~l~~~~-~~~~~~l~l~G~~GsGKThLl~~~~~~~------~~~~--i~~~~-~~~~----~~~ 84 (226)
T PRK09087 19 GRDDLLVTESNRAAVSLVDHWP-NWPSPVVVLAGPVGSGKTHLASIWREKS------DALL--IHPNE-IGSD----AAN 84 (226)
T ss_pred ChhceeecCchHHHHHHHHhcc-cCCCCeEEEECCCCCCHHHHHHHHHHhc------CCEE--ecHHH-cchH----HHH
Confidence 7887773 445566665554 2233448999999999999999998765 2222 22211 1111 111
Q ss_pred HHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCC-ceEEEEecCccc----ccchhhhccc---e
Q 019145 136 TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK-VTRFFFICNYIS----RIIEPLASRC---A 207 (345)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~-~~~ii~~~n~~~----~l~~~l~~r~---~ 207 (345)
.. ..++|+|||++.+.. .+..|+.+++.... ...+|++++... ...+.+++|+ .
T Consensus 85 ~~-----------------~~~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl 146 (226)
T PRK09087 85 AA-----------------AEGPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAAT 146 (226)
T ss_pred hh-----------------hcCeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCc
Confidence 10 113899999998753 34567777765433 455777775432 2468899998 5
Q ss_pred eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH---HhCCCCCHHHHHHhhCC
Q 019145 208 KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR---LFGSSITSKDLISVSGV 279 (345)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~---~~~~~it~~~v~~~~~~ 279 (345)
++.+.+|+.+++..++++.++..++.+++++++.|++.+.|+++.++..+..+.. ..+..||.+.+++++..
T Consensus 147 ~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~~ 221 (226)
T PRK09087 147 VVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRALAAEVLNE 221 (226)
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999986665543 34778999999888754
No 98
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.82 E-value=7.5e-18 Score=154.96 Aligned_cols=230 Identities=22% Similarity=0.260 Sum_probs=154.8
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHH----HcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL----ETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l----~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
...++...|.| +.++|++..+..|...+ ..+..++++|+||||+|||++++.+++.+.... ....++.+++.
T Consensus 19 ~~~~l~~~~~P---~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-~~~~~v~in~~ 94 (394)
T PRK00411 19 DEEVLEPDYVP---ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-VKVVYVYINCQ 94 (394)
T ss_pred ChhhCCCCCcC---CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-CCcEEEEEECC
Confidence 34455556655 35778888877776665 334556799999999999999999999874322 24677888886
Q ss_pred CccchHH-HHHHHHHHHHhh-hcCCCCCC---------CCCCCCeEEEEEcCCCCCC----HHHHHHHHHHHhhcCC-ce
Q 019145 123 DDRGINV-VRTKIKTFAAVA-VGSGQRRG---------GYPCPPYKIIILDEADSMT----EDAQNALRRTMETYSK-VT 186 (345)
Q Consensus 123 ~~~~~~~-~~~~~~~~~~~~-~~~~~~~~---------~~~~~~~~iliiDE~~~l~----~~~~~~l~~~le~~~~-~~ 186 (345)
...+... +......+.... ...+.... ......+.+|+|||+|.+. .+....|+++++..+. ++
T Consensus 95 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v 174 (394)
T PRK00411 95 IDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARI 174 (394)
T ss_pred cCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeE
Confidence 5444322 222222221100 00000000 0012345689999999986 3455566666654433 56
Q ss_pred EEEEecCccc---ccchhhhccce--eEEecCCCHHHHHHHHHHHHHHh--CCCCCHHHHHHHHHhc---CCCHHHHHHH
Q 019145 187 RFFFICNYIS---RIIEPLASRCA--KFRFKPLSEEVMSSRVLHICNEE--GLNLDAEALSTLSSIS---QGDLRRAITY 256 (345)
Q Consensus 187 ~ii~~~n~~~---~l~~~l~~r~~--~i~~~~~~~~~~~~~l~~~~~~~--~~~i~~~~~~~l~~~s---~g~~r~~~~~ 256 (345)
.+|+++|... .+.+.+.+++. .+.|+|++.+++.++++.+++.. ...+++++++.+++.+ .||+|.+++.
T Consensus 175 ~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~l 254 (394)
T PRK00411 175 GVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDL 254 (394)
T ss_pred EEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHH
Confidence 7888887653 45677777764 78999999999999999988653 2358999999998887 8999999999
Q ss_pred HHHHHHHh----CCCCCHHHHHHhhCCC
Q 019145 257 LQGAARLF----GSSITSKDLISVSGVI 280 (345)
Q Consensus 257 l~~~~~~~----~~~it~~~v~~~~~~~ 280 (345)
|..++..+ ...|+.++|.++....
T Consensus 255 l~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 255 LRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 98876554 2459999999887765
No 99
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.81 E-value=2.3e-18 Score=158.96 Aligned_cols=206 Identities=17% Similarity=0.139 Sum_probs=144.5
Q ss_pred CCCCccccccHHHHHHHHHHHHc----------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc--
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLET----------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD-- 124 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~----------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~-- 124 (345)
+.+|+++.|.+.++..+...... ..+..+||+||||||||.+|+++++++ +.+++.++++..
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~------~~~~~~l~~~~l~~ 297 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW------QLPLLRLDVGKLFG 297 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh------CCCEEEEEhHHhcc
Confidence 34788999988877666543211 223459999999999999999999998 677888876432
Q ss_pred ----cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH------------HHHHHHHHHHhhcCCceEE
Q 019145 125 ----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE------------DAQNALRRTMETYSKVTRF 188 (345)
Q Consensus 125 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~------------~~~~~l~~~le~~~~~~~i 188 (345)
.+...++..+...... .+.||+|||+|.+.. .....++.++++....+.+
T Consensus 298 ~~vGese~~l~~~f~~A~~~--------------~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~v 363 (489)
T CHL00195 298 GIVGESESRMRQMIRIAEAL--------------SPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFV 363 (489)
T ss_pred cccChHHHHHHHHHHHHHhc--------------CCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEE
Confidence 1223344444332221 235999999997632 2345677777776667778
Q ss_pred EEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHhcCC----CHHHHHHHHHHH
Q 019145 189 FFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLN-LDAEALSTLSSISQG----DLRRAITYLQGA 260 (345)
Q Consensus 189 i~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~-i~~~~~~~l~~~s~g----~~r~~~~~l~~~ 260 (345)
|.+||.++.+++++.+ |++ .+.++.|+.++..++++..+.+.+.. .++..++.+++.+.| |++.++......
T Consensus 364 IaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~ 443 (489)
T CHL00195 364 VATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYI 443 (489)
T ss_pred EEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence 8899999999999987 776 78999999999999999998875533 335557788877644 555555544444
Q ss_pred HHHhCCCCCHHHHHHhhCCCCH
Q 019145 261 ARLFGSSITSKDLISVSGVIPP 282 (345)
Q Consensus 261 ~~~~~~~it~~~v~~~~~~~~~ 282 (345)
+...+..++.+++..++....+
T Consensus 444 A~~~~~~lt~~dl~~a~~~~~P 465 (489)
T CHL00195 444 AFYEKREFTTDDILLALKQFIP 465 (489)
T ss_pred HHHcCCCcCHHHHHHHHHhcCC
Confidence 4444677999998887755433
No 100
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=99.81 E-value=3.3e-17 Score=142.28 Aligned_cols=175 Identities=17% Similarity=0.246 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHcCCCCcE-EEeCCCCCCHHHHHHHHHHHhcCCCC-------CCCceeeeec-CCccchHHHHHHHHHHH
Q 019145 68 EVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFGPEL-------YKSRVLELNA-SDDRGINVVRTKIKTFA 138 (345)
Q Consensus 68 ~~~~~l~~~l~~~~~~~l-ll~G~~G~GKT~la~~la~~l~~~~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 138 (345)
.+++.+.+.++.+..+|+ ||+|++|+||+.++..+++.+.|... ...++..++. ....+.+.+++..+.+.
T Consensus 3 ~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~ 82 (299)
T PRK07132 3 NWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLY 82 (299)
T ss_pred hHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhc
Confidence 467788999999988886 79999999999999999999977431 1124444541 23355667776666654
Q ss_pred HhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccceeEEecCCCHHH
Q 019145 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEV 218 (345)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~ 218 (345)
..+.. .++++|+|||+++.++...++.|++++|++|+++.+|++++.+.++.++++|||.++.|.+++.++
T Consensus 83 ~~~~~---------~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~ 153 (299)
T PRK07132 83 FSSFV---------QSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQK 153 (299)
T ss_pred cCCcc---------cCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHH
Confidence 33211 137789999999999999999999999999999999999988899999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 019145 219 MSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258 (345)
Q Consensus 219 ~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~ 258 (345)
+.+++... + ++++....++..++| +..++..+.
T Consensus 154 l~~~l~~~----~--~~~~~a~~~a~~~~~-~~~a~~~~~ 186 (299)
T PRK07132 154 ILAKLLSK----N--KEKEYNWFYAYIFSN-FEQAEKYIN 186 (299)
T ss_pred HHHHHHHc----C--CChhHHHHHHHHcCC-HHHHHHHHh
Confidence 99998532 3 667777777777775 888887653
No 101
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.81 E-value=4.1e-18 Score=145.96 Aligned_cols=160 Identities=19% Similarity=0.218 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCC----------CCCCceeeeecCC---ccchHHHHH
Q 019145 67 EEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPE----------LYKSRVLELNASD---DRGINVVRT 132 (345)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~----------~~~~~~~~~~~~~---~~~~~~~~~ 132 (345)
...++.+...+..++.+| +||+||+|+||+++|..+++.+.|.. ..+.++..+.+.. ..+++.+++
T Consensus 3 ~~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~ 82 (290)
T PRK05917 3 SAAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRA 82 (290)
T ss_pred cHHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHH
Confidence 346788899999999888 58999999999999999999999853 2234455453322 245777777
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccceeEEec
Q 019145 133 KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFK 212 (345)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~ 212 (345)
....+...+ ..++++|+|||++|.++.+.+++|++.+|++|+++.+|++|+.+..+.++++|||..+.|+
T Consensus 83 l~~~~~~~p----------~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~ 152 (290)
T PRK05917 83 IKKQIWIHP----------YESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIP 152 (290)
T ss_pred HHHHHhhCc----------cCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEcc
Confidence 666655443 2357889999999999999999999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHH
Q 019145 213 PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLR 251 (345)
Q Consensus 213 ~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r 251 (345)
++. ...++++.+..++..++|+++
T Consensus 153 ~~~---------------~~~i~~~~~~~l~~~~~g~~~ 176 (290)
T PRK05917 153 MEE---------------KTLVSKEDIAYLIGYAQGKES 176 (290)
T ss_pred chh---------------ccCCCHHHHHHHHHHhCCChh
Confidence 862 123678888888888888875
No 102
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.80 E-value=2.3e-18 Score=168.68 Aligned_cols=218 Identities=19% Similarity=0.221 Sum_probs=161.3
Q ss_pred cchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCceeeeecCC
Q 019145 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNASD 123 (345)
Q Consensus 48 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~----~~~~~~~~~~~~~ 123 (345)
..+++++.+|..+++++|+++.+..+...+.....+|++|+||||||||++++.+++.+.... ..+..++.++...
T Consensus 169 ~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~ 248 (731)
T TIGR02639 169 TVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGS 248 (731)
T ss_pred hhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHH
Confidence 347889999999999999999999999999888889999999999999999999999974322 2355666666432
Q ss_pred cc----chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC---------HHHHHHHHHHHhhcCCceEEEE
Q 019145 124 DR----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT---------EDAQNALRRTMETYSKVTRFFF 190 (345)
Q Consensus 124 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~---------~~~~~~l~~~le~~~~~~~ii~ 190 (345)
.. ....+.+.++........ ....||||||+|.+. .+..+.|...+++ +...+|.
T Consensus 249 l~a~~~~~g~~e~~l~~i~~~~~~----------~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~Ig 316 (731)
T TIGR02639 249 LLAGTKYRGDFEERLKAVVSEIEK----------EPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIG 316 (731)
T ss_pred HhhhccccchHHHHHHHHHHHHhc----------cCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEE
Confidence 11 111222333332222111 123599999999884 3456778888875 4567777
Q ss_pred ecCc-----ccccchhhhccceeEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhcCC------CHHHHHH
Q 019145 191 ICNY-----ISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSISQG------DLRRAIT 255 (345)
Q Consensus 191 ~~n~-----~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~s~g------~~r~~~~ 255 (345)
+||. ....++++.+||..+.+++|+.++...+++..... +++.++++++..+++.+.. -+++++.
T Consensus 317 aTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~ 396 (731)
T TIGR02639 317 STTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAID 396 (731)
T ss_pred ecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHH
Confidence 7764 23568999999999999999999999999976653 4578999999999988854 3888999
Q ss_pred HHHHHHHHh--------CCCCCHHHHHHhh
Q 019145 256 YLQGAARLF--------GSSITSKDLISVS 277 (345)
Q Consensus 256 ~l~~~~~~~--------~~~it~~~v~~~~ 277 (345)
.++.++... ...|+.++|.+++
T Consensus 397 lld~a~a~~~~~~~~~~~~~v~~~~i~~~i 426 (731)
T TIGR02639 397 VIDEAGASFRLRPKAKKKANVSVKDIENVV 426 (731)
T ss_pred HHHHhhhhhhcCcccccccccCHHHHHHHH
Confidence 998776532 1238888887764
No 103
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.7e-17 Score=148.36 Aligned_cols=231 Identities=21% Similarity=0.308 Sum_probs=156.1
Q ss_pred hhhCCCCCccccccHHHHH----HHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchH
Q 019145 53 EKYRPKQVKDVAHQEEVVR----VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN 128 (345)
Q Consensus 53 ~~~~p~~~~~~~g~~~~~~----~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 128 (345)
+.|.|.. +.+++..+. .+..++.++.+.|++++|+||||||++++.+.+++..... ...++.+||....+..
T Consensus 12 ~~~iP~~---l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~-~~~~~yINc~~~~t~~ 87 (366)
T COG1474 12 EDYIPEE---LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSA-NVEVVYINCLELRTPY 87 (366)
T ss_pred CCCCccc---ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhc-cCceEEEeeeeCCCHH
Confidence 4455555 556555554 4556667788888999999999999999999999854322 2237889997765554
Q ss_pred HHHH-HHHHHHHhhhcCCCCCC---------CCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhh---cCCceEEEEecCcc
Q 019145 129 VVRT-KIKTFAAVAVGSGQRRG---------GYPCPPYKIIILDEADSMTEDAQNALRRTMET---YSKVTRFFFICNYI 195 (345)
Q Consensus 129 ~~~~-~~~~~~~~~~~~~~~~~---------~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~---~~~~~~ii~~~n~~ 195 (345)
.+.. .+..+...+. .+.... .......-+|++||+|.|.....+.|..++.. ....+.+|+++|..
T Consensus 88 ~i~~~i~~~~~~~p~-~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~ 166 (366)
T COG1474 88 QVLSKILNKLGKVPL-TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDD 166 (366)
T ss_pred HHHHHHHHHcCCCCC-CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccH
Confidence 4333 3332221111 110000 01124567999999999976644555555543 32335567777765
Q ss_pred ---cccchhhhccce--eEEecCCCHHHHHHHHHHHHHHh--CCCCCHHHHHHHHH---hcCCCHHHHHHHHHHHHHHhC
Q 019145 196 ---SRIIEPLASRCA--KFRFKPLSEEVMSSRVLHICNEE--GLNLDAEALSTLSS---ISQGDLRRAITYLQGAARLFG 265 (345)
Q Consensus 196 ---~~l~~~l~~r~~--~i~~~~~~~~~~~~~l~~~~~~~--~~~i~~~~~~~l~~---~s~g~~r~~~~~l~~~~~~~~ 265 (345)
..+.+.+.++.. .+.|+|++.+|+..+|..+++.. .-.+++++++.++. ..+||.|.++..|..++..+.
T Consensus 167 ~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe 246 (366)
T COG1474 167 KFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAE 246 (366)
T ss_pred HHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence 357788888765 68899999999999999998753 23388999888875 458899999999999988773
Q ss_pred ----CCCCHHHHHHhhCCCCHHHHHHH
Q 019145 266 ----SSITSKDLISVSGVIPPEVVEGL 288 (345)
Q Consensus 266 ----~~it~~~v~~~~~~~~~~~~~~l 288 (345)
..++.++|..+..........+.
T Consensus 247 ~~~~~~v~~~~v~~a~~~~~~~~~~~~ 273 (366)
T COG1474 247 REGSRKVSEDHVREAQEEIERDVLEEV 273 (366)
T ss_pred hhCCCCcCHHHHHHHHHHhhHHHHHHH
Confidence 56999999998554444443333
No 104
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.80 E-value=4.7e-18 Score=147.93 Aligned_cols=186 Identities=21% Similarity=0.198 Sum_probs=134.9
Q ss_pred cccccHHHHHHHHHHHHc----------C-----CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCC-CCceeeeecCCcc
Q 019145 62 DVAHQEEVVRVLTNTLET----------A-----NCPHMLFYGPPGTGKTTTALAIAHQLFGPELY-KSRVLELNASDDR 125 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~----------~-----~~~~lll~G~~G~GKT~la~~la~~l~~~~~~-~~~~~~~~~~~~~ 125 (345)
+++|.+++++.+.+++.. + ...+++|+||||||||++|+++++.+...... ...++.+++.+..
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 578988887766554321 1 12369999999999999999999987432221 2356666653211
Q ss_pred c------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCC---------CHHHHHHHHHHHhhcCCceEEEE
Q 019145 126 G------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM---------TEDAQNALRRTMETYSKVTRFFF 190 (345)
Q Consensus 126 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l---------~~~~~~~l~~~le~~~~~~~ii~ 190 (345)
+ .......+.. ...++|||||++.+ +...++.|++.+++....+++|+
T Consensus 103 ~~~~g~~~~~~~~~~~~-----------------a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~ 165 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKR-----------------AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVIL 165 (284)
T ss_pred HhhcccchHHHHHHHHH-----------------ccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1 0011111111 12359999999977 34567899999998777888888
Q ss_pred ecCcc--c---ccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh--------cCCCHHHHHHH
Q 019145 191 ICNYI--S---RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI--------SQGDLRRAITY 256 (345)
Q Consensus 191 ~~n~~--~---~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~--------s~g~~r~~~~~ 256 (345)
+++.. . .+.+++.+|+. .++|++++.+++..++..++++.+..++++++..+.++ ..||.|.+.|.
T Consensus 166 a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ 245 (284)
T TIGR02880 166 AGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNA 245 (284)
T ss_pred eCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 76532 2 24689999997 89999999999999999999999999999999988775 36999999999
Q ss_pred HHHHHHHh
Q 019145 257 LQGAARLF 264 (345)
Q Consensus 257 l~~~~~~~ 264 (345)
++.+....
T Consensus 246 ve~~~~~~ 253 (284)
T TIGR02880 246 IDRARLRQ 253 (284)
T ss_pred HHHHHHHH
Confidence 98887553
No 105
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.79 E-value=3.6e-17 Score=150.83 Aligned_cols=212 Identities=11% Similarity=0.168 Sum_probs=146.5
Q ss_pred CCCCCcccc-cc--HHHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHH
Q 019145 56 RPKQVKDVA-HQ--EEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVV 130 (345)
Q Consensus 56 ~p~~~~~~~-g~--~~~~~~l~~~l~~~~--~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~ 130 (345)
.+.+|+.++ |. ..+......+....+ .++++|+|++|+|||||++++++++... ..+..++.+++.+.. ..+
T Consensus 110 ~~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~-~~~~~v~yv~~~~f~--~~~ 186 (450)
T PRK14087 110 NENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESN-FSDLKVSYMSGDEFA--RKA 186 (450)
T ss_pred cccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHh-CCCCeEEEEEHHHHH--HHH
Confidence 356888777 43 324455555554322 2459999999999999999999987321 123455555543211 111
Q ss_pred HHHHHH----HHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC--HHHHHHHHHHHhhcCC-ceEEEEecCccc----ccc
Q 019145 131 RTKIKT----FAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSK-VTRFFFICNYIS----RII 199 (345)
Q Consensus 131 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~--~~~~~~l~~~le~~~~-~~~ii~~~n~~~----~l~ 199 (345)
...+.. ..... ......++|+|||++.+. ...++.|+.+++.... ...+|++++... .+.
T Consensus 187 ~~~l~~~~~~~~~~~---------~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~ 257 (450)
T PRK14087 187 VDILQKTHKEIEQFK---------NEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFD 257 (450)
T ss_pred HHHHHHhhhHHHHHH---------HHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhcc
Confidence 111110 00000 011245699999999986 5667788888775433 235778876543 356
Q ss_pred hhhhccce---eEEecCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh-----CCCCC
Q 019145 200 EPLASRCA---KFRFKPLSEEVMSSRVLHICNEEGL--NLDAEALSTLSSISQGDLRRAITYLQGAARLF-----GSSIT 269 (345)
Q Consensus 200 ~~l~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~--~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~-----~~~it 269 (345)
+.+.+|+. .+.+.+|+.+++.++|++.++..|+ .+++++++.|++.++||+|.+.+.|..+..++ +..||
T Consensus 258 ~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it 337 (450)
T PRK14087 258 NRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIIT 337 (450)
T ss_pred HHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCC
Confidence 88899886 8999999999999999999998885 69999999999999999999999998876443 25799
Q ss_pred HHHHHHhhCC
Q 019145 270 SKDLISVSGV 279 (345)
Q Consensus 270 ~~~v~~~~~~ 279 (345)
.+.+.+++..
T Consensus 338 ~~~v~~~l~~ 347 (450)
T PRK14087 338 IEIVSDLFRD 347 (450)
T ss_pred HHHHHHHHhh
Confidence 9999888753
No 106
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.79 E-value=8.2e-18 Score=158.18 Aligned_cols=204 Identities=21% Similarity=0.184 Sum_probs=137.6
Q ss_pred hhCCCCCccccccHHHHHHHHHHHH------------cCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeec
Q 019145 54 KYRPKQVKDVAHQEEVVRVLTNTLE------------TANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (345)
Q Consensus 54 ~~~p~~~~~~~g~~~~~~~l~~~l~------------~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 121 (345)
.....+|++++|.++.+..+.+++. ...+.++||+||||||||++++++++++ +.+++.+++
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~------~~~~~~i~~ 121 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA------GVPFFSISG 121 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc------CCCeeeccH
Confidence 3445689999999888877766553 1233459999999999999999999997 667777766
Q ss_pred CCcc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------------HHHHHHHHHHhh
Q 019145 122 SDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMET 181 (345)
Q Consensus 122 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------------~~~~~l~~~le~ 181 (345)
++.. +...++..+...... .+.||+|||+|.+.. ...+.|+..++.
T Consensus 122 ~~~~~~~~g~~~~~l~~~f~~a~~~--------------~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~ 187 (495)
T TIGR01241 122 SDFVEMFVGVGASRVRDLFEQAKKN--------------APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG 187 (495)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhc--------------CCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcc
Confidence 4321 122333333332211 235999999998742 233455555654
Q ss_pred cC--CceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC----CHHH
Q 019145 182 YS--KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG----DLRR 252 (345)
Q Consensus 182 ~~--~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g----~~r~ 252 (345)
.. ..+.+|.+||.++.+++++.+ |++ .++++.|+.++..++++..+...... ++..+..+++.+.| |++.
T Consensus 188 ~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgadl~~ 266 (495)
T TIGR01241 188 FGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGADLAN 266 (495)
T ss_pred ccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHHHHHH
Confidence 32 356788889999999999987 565 79999999999999999888654443 34456778877654 4444
Q ss_pred HHHHHHHHHHHh-CCCCCHHHHHHhhC
Q 019145 253 AITYLQGAARLF-GSSITSKDLISVSG 278 (345)
Q Consensus 253 ~~~~l~~~~~~~-~~~it~~~v~~~~~ 278 (345)
+++.....+... ...|+.+++.+++.
T Consensus 267 l~~eA~~~a~~~~~~~i~~~~l~~a~~ 293 (495)
T TIGR01241 267 LLNEAALLAARKNKTEITMNDIEEAID 293 (495)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 444332222222 34599999987664
No 107
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.79 E-value=2.1e-17 Score=154.25 Aligned_cols=208 Identities=17% Similarity=0.156 Sum_probs=144.0
Q ss_pred CCCcccc-cc-HH-HHHHHHHHHHc-CC-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccch--HHH
Q 019145 58 KQVKDVA-HQ-EE-VVRVLTNTLET-AN-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI--NVV 130 (345)
Q Consensus 58 ~~~~~~~-g~-~~-~~~~l~~~l~~-~~-~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~--~~~ 130 (345)
.+|++|+ |. .. .......+... +. .+.++|||++|+|||||++++++++.. ...+..++.+++.+.... ..+
T Consensus 285 ~TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~-~~~g~~V~Yitaeef~~el~~al 363 (617)
T PRK14086 285 YTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARR-LYPGTRVRYVSSEEFTNEFINSI 363 (617)
T ss_pred CCHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEeeHHHHHHHHHHHH
Confidence 4888777 43 22 33344444443 22 234899999999999999999999732 112345555554331100 000
Q ss_pred HH-HHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--HHHHHHHHHHhhcCC-ceEEEEecCcc----cccchhh
Q 019145 131 RT-KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYSK-VTRFFFICNYI----SRIIEPL 202 (345)
Q Consensus 131 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--~~~~~l~~~le~~~~-~~~ii~~~n~~----~~l~~~l 202 (345)
.. ....+.. .....++|+|||++.+.. ..++.|+.+++.... ...+|++++.. ..+.+.|
T Consensus 364 ~~~~~~~f~~------------~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL 431 (617)
T PRK14086 364 RDGKGDSFRR------------RYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRL 431 (617)
T ss_pred HhccHHHHHH------------HhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHH
Confidence 00 0111111 112457999999999843 346777788876544 34577788754 2467889
Q ss_pred hccce---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh---CCCCCHHHHHHh
Q 019145 203 ASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISV 276 (345)
Q Consensus 203 ~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~---~~~it~~~v~~~ 276 (345)
.+|+. ++.+.+|+.+...++|++.++..++.++++++++|++...+|+|.+...|..+..++ +..||.+.++++
T Consensus 432 ~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~~itl~la~~v 511 (617)
T PRK14086 432 RNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIV 511 (617)
T ss_pred HhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHH
Confidence 99986 899999999999999999999999999999999999999999999999888776554 667888888776
Q ss_pred hC
Q 019145 277 SG 278 (345)
Q Consensus 277 ~~ 278 (345)
+.
T Consensus 512 L~ 513 (617)
T PRK14086 512 LR 513 (617)
T ss_pred HH
Confidence 64
No 108
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.79 E-value=8.4e-17 Score=142.03 Aligned_cols=148 Identities=22% Similarity=0.306 Sum_probs=116.4
Q ss_pred cHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC-------------------CCCceeeeecCC--
Q 019145 66 QEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL-------------------YKSRVLELNASD-- 123 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~-------------------~~~~~~~~~~~~-- 123 (345)
+....+.+... .++.+| +||+||+|+|||++|+.+++.+.|... .+.+++.+.+..
T Consensus 6 ~~~~w~~l~~~--~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~ 83 (325)
T PRK08699 6 HQEQWRQIAEH--WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE 83 (325)
T ss_pred cHHHHHHHHHh--cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc
Confidence 34445555544 356666 799999999999999999999987432 124566665521
Q ss_pred --------ccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcc
Q 019145 124 --------DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (345)
Q Consensus 124 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~ 195 (345)
..+++.+++........+ ..+.++|+++|+++.++...++.|++.+++++..+.+|++|..+
T Consensus 84 ~~~g~~~~~I~id~iR~l~~~~~~~p----------~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~ 153 (325)
T PRK08699 84 PENGRKLLQIKIDAVREIIDNVYLTS----------VRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAA 153 (325)
T ss_pred ccccccCCCcCHHHHHHHHHHHhhCc----------ccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCCh
Confidence 235677777665544332 22467899999999999999999999999988888899999999
Q ss_pred cccchhhhccceeEEecCCCHHHHHHHHHH
Q 019145 196 SRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225 (345)
Q Consensus 196 ~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~ 225 (345)
..+.+.+.+||..+.|.+++.+++..||..
T Consensus 154 ~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 154 DKVLPTIKSRCRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HhChHHHHHHhhhhcCCCCCHHHHHHHHHh
Confidence 999999999999999999999999999953
No 109
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.79 E-value=9e-18 Score=154.26 Aligned_cols=207 Identities=14% Similarity=0.186 Sum_probs=143.7
Q ss_pred CCCcccc-cc--HHHHHHHHHHHHc-----C-CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchH
Q 019145 58 KQVKDVA-HQ--EEVVRVLTNTLET-----A-NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN 128 (345)
Q Consensus 58 ~~~~~~~-g~--~~~~~~l~~~l~~-----~-~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 128 (345)
.+|++++ |. ..+......+... + ..++++||||+|+||||+++++++++... +..++.+++.... .
T Consensus 108 ~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~---~~~v~yi~~~~f~--~ 182 (445)
T PRK12422 108 MTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRES---GGKILYVRSELFT--E 182 (445)
T ss_pred ccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEeeHHHHH--H
Confidence 3888777 53 3233455555432 1 22459999999999999999999998432 3445555443210 1
Q ss_pred HHHHHHHH--HHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--HHHHHHHHHHhhcC-CceEEEEecCcc----cccc
Q 019145 129 VVRTKIKT--FAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYS-KVTRFFFICNYI----SRII 199 (345)
Q Consensus 129 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--~~~~~l~~~le~~~-~~~~ii~~~n~~----~~l~ 199 (345)
.+...+.. ..... ......++|+|||++.+.. ..++.++.+++... ....+|++++.. ..+.
T Consensus 183 ~~~~~l~~~~~~~f~---------~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~ 253 (445)
T PRK12422 183 HLVSAIRSGEMQRFR---------QFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAME 253 (445)
T ss_pred HHHHHHhcchHHHHH---------HHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhH
Confidence 11111110 00000 0112457999999999853 45667777765432 345677777653 3467
Q ss_pred hhhhccce---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH---HHh---CCCCCH
Q 019145 200 EPLASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA---RLF---GSSITS 270 (345)
Q Consensus 200 ~~l~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~---~~~---~~~it~ 270 (345)
+++.+|+. .+.+.+|+.+++..+|++.++..++.+++++++.|+....+|+|.+.+.+..++ .++ +..||.
T Consensus 254 ~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~l~~~~a~~~~~~~~i~~ 333 (445)
T PRK12422 254 ERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLAKRVAYKKLSHQLLYV 333 (445)
T ss_pred HHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhCCCCCH
Confidence 89999984 899999999999999999999999999999999999999999999999999884 333 567999
Q ss_pred HHHHHhhC
Q 019145 271 KDLISVSG 278 (345)
Q Consensus 271 ~~v~~~~~ 278 (345)
+.+++++.
T Consensus 334 ~~~~~~l~ 341 (445)
T PRK12422 334 DDIKALLH 341 (445)
T ss_pred HHHHHHHH
Confidence 98887765
No 110
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=1.6e-17 Score=152.32 Aligned_cols=188 Identities=22% Similarity=0.250 Sum_probs=140.5
Q ss_pred hCCCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeec
Q 019145 55 YRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (345)
Q Consensus 55 ~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 121 (345)
....+|+++-|+++++..|+..+.- ..+..+|||||||||||++|+++|++. ..+|+.+.+
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~------~~nFlsvkg 501 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA------GMNFLSVKG 501 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh------cCCeeeccC
Confidence 3445899999999999999877633 234459999999999999999999998 778888766
Q ss_pred CC------ccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH-----------HHHHHHHHHHhhcC-
Q 019145 122 SD------DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTMETYS- 183 (345)
Q Consensus 122 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~-----------~~~~~l~~~le~~~- 183 (345)
+. ..+...++..+......++ .|+|+||+|.+.. .+.+.|+.-|+...
T Consensus 502 pEL~sk~vGeSEr~ir~iF~kAR~~aP--------------~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~ 567 (693)
T KOG0730|consen 502 PELFSKYVGESERAIREVFRKARQVAP--------------CIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEA 567 (693)
T ss_pred HHHHHHhcCchHHHHHHHHHHHhhcCC--------------eEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccc
Confidence 43 3445566777766655432 5999999998843 34567777776433
Q ss_pred -CceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcCC-CHHHHHHHH
Q 019145 184 -KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQG-DLRRAITYL 257 (345)
Q Consensus 184 -~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~~~s~g-~~r~~~~~l 257 (345)
.++.+|.+||.++.+++++.+ |++ ++++++|+.+-..++++..+++ .+++++ .++.|++.+.| +-..+.+.+
T Consensus 568 ~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk--mp~~~~vdl~~La~~T~g~SGAel~~lC 645 (693)
T KOG0730|consen 568 LKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK--MPFSEDVDLEELAQATEGYSGAEIVAVC 645 (693)
T ss_pred cCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc--CCCCccccHHHHHHHhccCChHHHHHHH
Confidence 467778889999999999999 777 8899999999999999888764 556666 58888887654 334445555
Q ss_pred HHHHHHh
Q 019145 258 QGAARLF 264 (345)
Q Consensus 258 ~~~~~~~ 264 (345)
+.++.++
T Consensus 646 q~A~~~a 652 (693)
T KOG0730|consen 646 QEAALLA 652 (693)
T ss_pred HHHHHHH
Confidence 5555544
No 111
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.78 E-value=1.4e-17 Score=153.44 Aligned_cols=207 Identities=15% Similarity=0.180 Sum_probs=141.2
Q ss_pred CCCcccc-cc--HHHHHHHHHHHHcCC-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHH
Q 019145 58 KQVKDVA-HQ--EEVVRVLTNTLETAN-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (345)
Q Consensus 58 ~~~~~~~-g~--~~~~~~l~~~l~~~~-~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (345)
.+|++++ |. ..+......+..... .++++||||+|+||||+++++++++.... .+..++.+++.+. ...+...
T Consensus 102 ~tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~-~~~~v~yi~~~~f--~~~~~~~ 178 (440)
T PRK14088 102 YTFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE-PDLRVMYITSEKF--LNDLVDS 178 (440)
T ss_pred CcccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEEHHHH--HHHHHHH
Confidence 3788777 53 333345555554332 34599999999999999999999874321 2345555554321 0111111
Q ss_pred H-----HHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC--HHHHHHHHHHHhhcCC-ceEEEEecCc-cc---ccchh
Q 019145 134 I-----KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSK-VTRFFFICNY-IS---RIIEP 201 (345)
Q Consensus 134 ~-----~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~--~~~~~~l~~~le~~~~-~~~ii~~~n~-~~---~l~~~ 201 (345)
+ ..+.... ....++|+|||++.+. ...+..|+..++.... ...+|++++. +. .+.+.
T Consensus 179 ~~~~~~~~f~~~~-----------~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~r 247 (440)
T PRK14088 179 MKEGKLNEFREKY-----------RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_pred HhcccHHHHHHHH-----------HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHH
Confidence 1 1111100 0134699999999874 2345566666654332 2356666653 22 35678
Q ss_pred hhccce---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh---CCCCCHHHHHH
Q 019145 202 LASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLIS 275 (345)
Q Consensus 202 l~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~---~~~it~~~v~~ 275 (345)
+.+|+. ++.+.+|+.+.+..++++.++..++.+++++++.|++.+.||+|.+...+..+..++ +.+||.+.+.+
T Consensus 248 L~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~ 327 (440)
T PRK14088 248 LVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAIL 327 (440)
T ss_pred HhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 889887 899999999999999999999999999999999999999999999999888776544 67799988877
Q ss_pred hhC
Q 019145 276 VSG 278 (345)
Q Consensus 276 ~~~ 278 (345)
++.
T Consensus 328 ~L~ 330 (440)
T PRK14088 328 LLK 330 (440)
T ss_pred HHH
Confidence 664
No 112
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.78 E-value=2.7e-17 Score=149.57 Aligned_cols=202 Identities=21% Similarity=0.254 Sum_probs=133.9
Q ss_pred CCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (345)
..+|+++.|.+..++.+...+.. ..+.+++|+||||||||++|+++++++ +..++.++++.
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~------~~~~i~v~~~~ 200 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET------NATFIRVVGSE 200 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh------CCCEEEeehHH
Confidence 34778899999999888887632 234459999999999999999999998 56677777654
Q ss_pred ccc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHhhc----
Q 019145 124 DRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETY---- 182 (345)
Q Consensus 124 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le~~---- 182 (345)
... ...++..+..... ..+.+|+|||+|.+. ...+..+..++...
T Consensus 201 l~~~~~g~~~~~i~~~f~~a~~--------------~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 201 LVQKFIGEGARLVRELFELARE--------------KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred HhHhhccchHHHHHHHHHHHHh--------------cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 211 1122222222111 134699999999873 33444555555322
Q ss_pred -CCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC-HHHHHHHH
Q 019145 183 -SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD-LRRAITYL 257 (345)
Q Consensus 183 -~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~-~r~~~~~l 257 (345)
..++.+|++||.++.+++++.+ |+. .+.|++|+.++..++++..++...+. .+..+..+++.+.|- .+.+...+
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~~~~la~~t~g~sgadl~~l~ 345 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVDLEELAELTEGASGADLKAIC 345 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCCHHHHHHHcCCCCHHHHHHHH
Confidence 2467889999999999999986 665 79999999999999999887654432 123367777766442 23333333
Q ss_pred HHHHHHh----CCCCCHHHHHHhhCC
Q 019145 258 QGAARLF----GSSITSKDLISVSGV 279 (345)
Q Consensus 258 ~~~~~~~----~~~it~~~v~~~~~~ 279 (345)
..++..+ ...|+.+|+.+++..
T Consensus 346 ~eA~~~a~~~~~~~i~~~d~~~A~~~ 371 (389)
T PRK03992 346 TEAGMFAIRDDRTEVTMEDFLKAIEK 371 (389)
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 3333322 245888888776543
No 113
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.77 E-value=2.8e-17 Score=137.72 Aligned_cols=192 Identities=19% Similarity=0.225 Sum_probs=125.9
Q ss_pred CCCcccc-c--cHHHHHHHHHHHHcCCC--CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHH
Q 019145 58 KQVKDVA-H--QEEVVRVLTNTLETANC--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (345)
Q Consensus 58 ~~~~~~~-g--~~~~~~~l~~~l~~~~~--~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (345)
.+|+.++ | ++.+............. ..++||||+|+|||||++++++++.... .+..++.+++.+... .+..
T Consensus 5 ~tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~-~~~~v~y~~~~~f~~--~~~~ 81 (219)
T PF00308_consen 5 YTFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQH-PGKRVVYLSAEEFIR--EFAD 81 (219)
T ss_dssp -SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHC-TTS-EEEEEHHHHHH--HHHH
T ss_pred CccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhcc-ccccceeecHHHHHH--HHHH
Confidence 3788776 5 34445555555444332 3489999999999999999999874311 134555555432110 0111
Q ss_pred H-----HHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHH--HHHHHHHHHhhcC-CceEEEEecCcc----cccch
Q 019145 133 K-----IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--AQNALRRTMETYS-KVTRFFFICNYI----SRIIE 200 (345)
Q Consensus 133 ~-----~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~--~~~~l~~~le~~~-~~~~ii~~~n~~----~~l~~ 200 (345)
. +..+... ....++|+||+++.+... .++.|+.+++... ....+|++++.. ..+.+
T Consensus 82 ~~~~~~~~~~~~~------------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~ 149 (219)
T PF00308_consen 82 ALRDGEIEEFKDR------------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLP 149 (219)
T ss_dssp HHHTTSHHHHHHH------------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-H
T ss_pred HHHcccchhhhhh------------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccCh
Confidence 1 1111111 124569999999999754 4778888877542 234577777433 23578
Q ss_pred hhhccce---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 019145 201 PLASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264 (345)
Q Consensus 201 ~l~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~ 264 (345)
.+.+|+. .+.+.+|+.++...++++.+...|+.+++++++.|++...+|+|.+...+..+..++
T Consensus 150 ~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 150 DLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGALNRLDAYA 216 (219)
T ss_dssp HHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHHHHHHHh
Confidence 8989875 899999999999999999999999999999999999999999999999999887653
No 114
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.77 E-value=2.5e-17 Score=151.53 Aligned_cols=207 Identities=16% Similarity=0.196 Sum_probs=141.1
Q ss_pred CCcccc-ccH--HHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHH
Q 019145 59 QVKDVA-HQE--EVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (345)
Q Consensus 59 ~~~~~~-g~~--~~~~~l~~~l~~~~--~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (345)
+|++++ |.. .+......+..... .+.++|+||+|+||||+++++++++... ..+..++.+++.+... ......
T Consensus 108 tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~-~~~~~v~yi~~~~~~~-~~~~~~ 185 (405)
T TIGR00362 108 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILEN-NPNAKVVYVSSEKFTN-DFVNAL 185 (405)
T ss_pred cccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCCcEEEEEHHHHHH-HHHHHH
Confidence 677754 532 23445555554422 2348999999999999999999998432 1234556665533110 000000
Q ss_pred ----HHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--HHHHHHHHHHhhcC-CceEEEEecCcc----cccchhh
Q 019145 134 ----IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYS-KVTRFFFICNYI----SRIIEPL 202 (345)
Q Consensus 134 ----~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--~~~~~l~~~le~~~-~~~~ii~~~n~~----~~l~~~l 202 (345)
...+... ....++|+|||++.+.. ..++.|+.+++... ....+|++++.. ..+.+.+
T Consensus 186 ~~~~~~~~~~~------------~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l 253 (405)
T TIGR00362 186 RNNKMEEFKEK------------YRSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERL 253 (405)
T ss_pred HcCCHHHHHHH------------HHhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhh
Confidence 0011110 01246999999998853 34566777776542 234567777643 2356788
Q ss_pred hccce---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh---CCCCCHHHHHHh
Q 019145 203 ASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISV 276 (345)
Q Consensus 203 ~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~---~~~it~~~v~~~ 276 (345)
.+|+. .+.|++|+.+++..+++..++..++.+++++++.|++.+.||+|.+...+..+..++ +..||.+.+.++
T Consensus 254 ~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~ 333 (405)
T TIGR00362 254 RSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEA 333 (405)
T ss_pred hhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 89885 799999999999999999999999999999999999999999999777776665443 677999888887
Q ss_pred hCC
Q 019145 277 SGV 279 (345)
Q Consensus 277 ~~~ 279 (345)
+..
T Consensus 334 L~~ 336 (405)
T TIGR00362 334 LKD 336 (405)
T ss_pred HHH
Confidence 653
No 115
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.77 E-value=2.8e-17 Score=149.61 Aligned_cols=207 Identities=19% Similarity=0.224 Sum_probs=136.1
Q ss_pred hhhhhCCCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcee
Q 019145 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (345)
Q Consensus 51 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 117 (345)
+.++..+.+|+++.|.+..++.+.+++.. ..+.+++|+||||||||++|+++++++ ...++
T Consensus 173 ~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el------~~~fi 246 (438)
T PTZ00361 173 KVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET------SATFL 246 (438)
T ss_pred ccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCCEE
Confidence 34566667999999999999888887742 123459999999999999999999998 55677
Q ss_pred eeecCCccc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHH-
Q 019145 118 ELNASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTM- 179 (345)
Q Consensus 118 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~l- 179 (345)
.+.+++... ...++..+..... ..+.+|+|||+|.+. ...+..++.++
T Consensus 247 ~V~~seL~~k~~Ge~~~~vr~lF~~A~~--------------~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~ 312 (438)
T PTZ00361 247 RVVGSELIQKYLGDGPKLVRELFRVAEE--------------NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLN 312 (438)
T ss_pred EEecchhhhhhcchHHHHHHHHHHHHHh--------------CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHH
Confidence 776554211 1112222222111 134599999998763 12233344444
Q ss_pred --hh--cCCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhc----C
Q 019145 180 --ET--YSKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSIS----Q 247 (345)
Q Consensus 180 --e~--~~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~~~s----~ 247 (345)
+. ....+.+|++||..+.+++++.+ |++ .+.|++|+.++...+++....+..+ +++ .+..++..+ +
T Consensus 313 ~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l--~~dvdl~~la~~t~g~sg 390 (438)
T PTZ00361 313 QLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTL--AEDVDLEEFIMAKDELSG 390 (438)
T ss_pred HHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCC--CcCcCHHHHHHhcCCCCH
Confidence 32 13467889999999999999875 665 8999999999999999988765543 332 345555444 3
Q ss_pred CCHHHHHHHHHHHHHHhC-CCCCHHHHHHhhCC
Q 019145 248 GDLRRAITYLQGAARLFG-SSITSKDLISVSGV 279 (345)
Q Consensus 248 g~~r~~~~~l~~~~~~~~-~~it~~~v~~~~~~ 279 (345)
.|++.++......|...+ ..|+.+|+.+++..
T Consensus 391 AdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~ 423 (438)
T PTZ00361 391 ADIKAICTEAGLLALRERRMKVTQADFRKAKEK 423 (438)
T ss_pred HHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHH
Confidence 444444333333332223 45899988876543
No 116
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.3e-17 Score=149.57 Aligned_cols=182 Identities=21% Similarity=0.227 Sum_probs=137.8
Q ss_pred CCccccccHHHHHHHHHHHHc----------C--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc--
Q 019145 59 QVKDVAHQEEVVRVLTNTLET----------A--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD-- 124 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~----------~--~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~-- 124 (345)
.|.++-|.+..+..+...+-. | .+..+||+||||||||.+|+++|.++ +.+|+.++++..
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel------~vPf~~isApeivS 261 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL------GVPFLSISAPEIVS 261 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc------CCceEeecchhhhc
Confidence 488999999988888776632 1 22349999999999999999999999 889998887542
Q ss_pred ----cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHH-----------HHHHHHHHHhhcC------
Q 019145 125 ----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED-----------AQNALRRTMETYS------ 183 (345)
Q Consensus 125 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~-----------~~~~l~~~le~~~------ 183 (345)
.+...+++.+....... +.|+||||+|.+.+. ....|+..|++..
T Consensus 262 GvSGESEkkiRelF~~A~~~a--------------PcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g 327 (802)
T KOG0733|consen 262 GVSGESEKKIRELFDQAKSNA--------------PCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKG 327 (802)
T ss_pred ccCcccHHHHHHHHHHHhccC--------------CeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCC
Confidence 34556777777755443 359999999998642 3456788887643
Q ss_pred CceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 019145 184 KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260 (345)
Q Consensus 184 ~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~ 260 (345)
..+.+|-+||.++.++++|++ |++ .|.+.-|+.....++|+.+|+...+.- +-....|++.+.|-+..-+..|...
T Consensus 328 ~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTPGfVGADL~AL~~~ 406 (802)
T KOG0733|consen 328 DPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAKLTPGFVGADLMALCRE 406 (802)
T ss_pred CCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCCCccchhHHHHHHH
Confidence 346778889999999999998 555 799999999999999999997544432 2237888999888776655555444
Q ss_pred H
Q 019145 261 A 261 (345)
Q Consensus 261 ~ 261 (345)
|
T Consensus 407 A 407 (802)
T KOG0733|consen 407 A 407 (802)
T ss_pred H
Confidence 4
No 117
>CHL00176 ftsH cell division protein; Validated
Probab=99.77 E-value=5.6e-17 Score=154.48 Aligned_cols=201 Identities=21% Similarity=0.214 Sum_probs=137.5
Q ss_pred CCCCccccccHHHHHHHHHHH---Hc---------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc
Q 019145 57 PKQVKDVAHQEEVVRVLTNTL---ET---------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l---~~---------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (345)
..+|+++.|.++.+..+...+ +. ..+.++||+||||||||++|++++.++ +.+++.+++++.
T Consensus 179 ~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~------~~p~i~is~s~f 252 (638)
T CHL00176 179 GITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA------EVPFFSISGSEF 252 (638)
T ss_pred CCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh------CCCeeeccHHHH
Confidence 358899999888887766654 21 123459999999999999999999987 667777776542
Q ss_pred cc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH-----------H---HHHHHHHHHhhc--
Q 019145 125 RG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------D---AQNALRRTMETY-- 182 (345)
Q Consensus 125 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~-----------~---~~~~l~~~le~~-- 182 (345)
.. ...++..+..... ..+.||+|||+|.+.. . ..+.|+..++..
T Consensus 253 ~~~~~g~~~~~vr~lF~~A~~--------------~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 253 VEMFVGVGAARVRDLFKKAKE--------------NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred HHHhhhhhHHHHHHHHHHHhc--------------CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence 11 1122222222211 2345999999998832 2 234444444432
Q ss_pred CCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHHHHH
Q 019145 183 SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYLQ 258 (345)
Q Consensus 183 ~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g-~~r~~~~~l~ 258 (345)
...+.+|.+||.++.+++++.+ |++ .+.|.+|+.++...+++..++.... .++..+..+++.+.| +.+++.+.+.
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t~G~sgaDL~~lvn 397 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRTPGFSGADLANLLN 397 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcCCCCCHHHHHHHHH
Confidence 2456788889999999999987 454 7999999999999999998876433 345568889988876 5555555555
Q ss_pred HHHHHh----CCCCCHHHHHHhhC
Q 019145 259 GAARLF----GSSITSKDLISVSG 278 (345)
Q Consensus 259 ~~~~~~----~~~it~~~v~~~~~ 278 (345)
.++..+ ...||.+++.+++.
T Consensus 398 eAal~a~r~~~~~It~~dl~~Ai~ 421 (638)
T CHL00176 398 EAAILTARRKKATITMKEIDTAID 421 (638)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHH
Confidence 444322 34599999987764
No 118
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.77 E-value=1.6e-17 Score=154.54 Aligned_cols=206 Identities=16% Similarity=0.191 Sum_probs=143.8
Q ss_pred CCcccc-c--cHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHH
Q 019145 59 QVKDVA-H--QEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (345)
Q Consensus 59 ~~~~~~-g--~~~~~~~l~~~l~~~--~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (345)
+|++++ | +..+......+.... ..++++|+||+|+||||+++++++++.... .+..++.+++.+.. ..+...
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~-~~~~v~yi~~~~~~--~~~~~~ 196 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKN-PNAKVVYVTSEKFT--NDFVNA 196 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEEEHHHHH--HHHHHH
Confidence 777765 4 344556666665542 224589999999999999999999984321 23455555554311 111111
Q ss_pred HH-----HHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--HHHHHHHHHHhhcCC-ceEEEEecCccc----ccchh
Q 019145 134 IK-----TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYSK-VTRFFFICNYIS----RIIEP 201 (345)
Q Consensus 134 ~~-----~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--~~~~~l~~~le~~~~-~~~ii~~~n~~~----~l~~~ 201 (345)
+. .+... ....++|+|||++.+.. ..++.|+.+++.... ...+|++++.+. .+.+.
T Consensus 197 ~~~~~~~~~~~~------------~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~ 264 (450)
T PRK00149 197 LRNNTMEEFKEK------------YRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEER 264 (450)
T ss_pred HHcCcHHHHHHH------------HhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHH
Confidence 11 11110 11346999999998853 345667776664332 234666766432 26688
Q ss_pred hhccce---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh---CCCCCHHHHHH
Q 019145 202 LASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLIS 275 (345)
Q Consensus 202 l~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~---~~~it~~~v~~ 275 (345)
+.+|+. .+.|.+|+.+++..+++..+...++.+++++++.|++.++||+|.+...|..+..++ +..||.+.+++
T Consensus 265 l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~ 344 (450)
T PRK00149 265 LRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKE 344 (450)
T ss_pred HHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHH
Confidence 999985 799999999999999999999999999999999999999999999888887776543 67799999888
Q ss_pred hhCC
Q 019145 276 VSGV 279 (345)
Q Consensus 276 ~~~~ 279 (345)
++..
T Consensus 345 ~l~~ 348 (450)
T PRK00149 345 ALKD 348 (450)
T ss_pred HHHH
Confidence 8764
No 119
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.77 E-value=7.3e-17 Score=138.85 Aligned_cols=173 Identities=21% Similarity=0.288 Sum_probs=135.3
Q ss_pred ccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCC------------------CCCceeeeecC-Cc
Q 019145 65 HQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPEL------------------YKSRVLELNAS-DD 124 (345)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~------------------~~~~~~~~~~~-~~ 124 (345)
.|+.+++.+...+..++.+| +||+|| +||+++|..+++.+.|... ...++..+.+. ..
T Consensus 6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~ 83 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQV 83 (290)
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCc
Confidence 47888999999999999988 599996 6899999999999987542 12344444332 22
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhc
Q 019145 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLAS 204 (345)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~ 204 (345)
..++.+++....+...+. .++++|+|||++|.++....|+|++.+|++++++.+|++|+.+..+.++++|
T Consensus 84 I~idqIR~l~~~~~~~p~----------~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~S 153 (290)
T PRK07276 84 IKTDTIRELVKNFSQSGY----------EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKS 153 (290)
T ss_pred CCHHHHHHHHHHHhhCcc----------cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHH
Confidence 456778877777655432 2467899999999999999999999999999999999999999999999999
Q ss_pred cceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHH
Q 019145 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYL 257 (345)
Q Consensus 205 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l 257 (345)
||..+.|++ +.+++.+++. .+|+ +.+....++..+ |++..++..+
T Consensus 154 Rcq~i~f~~-~~~~~~~~L~----~~g~--~~~~a~~la~~~-~s~~~A~~l~ 198 (290)
T PRK07276 154 RTQIFHFPK-NEAYLIQLLE----QKGL--LKTQAELLAKLA-QSTSEAEKLA 198 (290)
T ss_pred cceeeeCCC-cHHHHHHHHH----HcCC--ChHHHHHHHHHC-CCHHHHHHHh
Confidence 999999976 7777777773 4564 344445555554 5788888776
No 120
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.76 E-value=8.8e-17 Score=145.49 Aligned_cols=202 Identities=21% Similarity=0.247 Sum_probs=133.6
Q ss_pred CCCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 56 RPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
.+.+|+++.|.+..++.+.+.+.. ..+.+++|+||||||||++++++++.+ +..++.+.++
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l------~~~fi~i~~s 213 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT------TATFIRVVGS 213 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehH
Confidence 345889999999999888877642 123459999999999999999999987 5566666553
Q ss_pred Ccc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHH---HHHHhhc
Q 019145 123 DDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNAL---RRTMETY 182 (345)
Q Consensus 123 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l---~~~le~~ 182 (345)
... +...++..+..... ..+.+|+|||+|.+. ...+..+ +..++..
T Consensus 214 ~l~~k~~ge~~~~lr~lf~~A~~--------------~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~ 279 (398)
T PTZ00454 214 EFVQKYLGEGPRMVRDVFRLARE--------------NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF 279 (398)
T ss_pred HHHHHhcchhHHHHHHHHHHHHh--------------cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc
Confidence 211 11122222222111 234699999999763 1223333 4444432
Q ss_pred --CCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHHH
Q 019145 183 --SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITY 256 (345)
Q Consensus 183 --~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g-~~r~~~~~ 256 (345)
..++.+|++||.++.+++++.+ |++ .++|++|+.++...+++..+...++. ++-.+..++..+.| +...+.+.
T Consensus 280 ~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dvd~~~la~~t~g~sgaDI~~l 358 (398)
T PTZ00454 280 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEVDLEDFVSRPEKISAADIAAI 358 (398)
T ss_pred CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-cccCHHHHHHHcCCCCHHHHHHH
Confidence 2467789999999999999987 665 79999999999999999888765543 22236677776644 44444444
Q ss_pred HHHHHHHh---C-CCCCHHHHHHhhC
Q 019145 257 LQGAARLF---G-SSITSKDLISVSG 278 (345)
Q Consensus 257 l~~~~~~~---~-~~it~~~v~~~~~ 278 (345)
+..++..+ + ..|+.+|+.+++.
T Consensus 359 ~~eA~~~A~r~~~~~i~~~df~~A~~ 384 (398)
T PTZ00454 359 CQEAGMQAVRKNRYVILPKDFEKGYK 384 (398)
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 44444333 2 3588888776643
No 121
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.76 E-value=7e-17 Score=159.29 Aligned_cols=204 Identities=18% Similarity=0.212 Sum_probs=150.0
Q ss_pred chhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC----CCCCCceeeeecCCc
Q 019145 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP----ELYKSRVLELNASDD 124 (345)
Q Consensus 49 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~----~~~~~~~~~~~~~~~ 124 (345)
.+++++.+|..++.++|+++.+..+..++..+..+|++|+||||||||++++.+++.+... ...+..++.++.+..
T Consensus 175 ~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l 254 (852)
T TIGR03345 175 TDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL 254 (852)
T ss_pred hhHHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh
Confidence 4788889999999999999999999999999999999999999999999999999987422 123345555544321
Q ss_pred ----cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------HHHHHHHHHHhhcCCceEEEEec
Q 019145 125 ----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------DAQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 125 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------~~~~~l~~~le~~~~~~~ii~~~ 192 (345)
.....+.+.++......... ....||||||+|.+.. +..+.|...+++ +...+|.+|
T Consensus 255 ~ag~~~~ge~e~~lk~ii~e~~~~---------~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~IgaT 323 (852)
T TIGR03345 255 QAGASVKGEFENRLKSVIDEVKAS---------PQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAAT 323 (852)
T ss_pred hcccccchHHHHHHHHHHHHHHhc---------CCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEec
Confidence 11212222333222221110 1346999999999853 233467777765 456677777
Q ss_pred Cc-----ccccchhhhccceeEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhcCC------CHHHHHHHH
Q 019145 193 NY-----ISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSISQG------DLRRAITYL 257 (345)
Q Consensus 193 n~-----~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~s~g------~~r~~~~~l 257 (345)
+. ....+++|.+||..+.+++|+.++...+|+..... +++.++++++..+++.|.+ -+.+++..+
T Consensus 324 T~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdll 403 (852)
T TIGR03345 324 TWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLL 403 (852)
T ss_pred CHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHH
Confidence 54 34578999999999999999999999997665542 5688999999999999854 477899999
Q ss_pred HHHHHH
Q 019145 258 QGAARL 263 (345)
Q Consensus 258 ~~~~~~ 263 (345)
+.++..
T Consensus 404 dea~a~ 409 (852)
T TIGR03345 404 DTACAR 409 (852)
T ss_pred HHHHHH
Confidence 887654
No 122
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=99.76 E-value=5.5e-16 Score=138.48 Aligned_cols=242 Identities=19% Similarity=0.218 Sum_probs=181.8
Q ss_pred HHHHHHcCCC-CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCC
Q 019145 73 LTNTLETANC-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGY 151 (345)
Q Consensus 73 l~~~l~~~~~-~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (345)
+...+..+.. +..++||+.-.-....+..+.+... .++........+..+ .... ..+...... +
T Consensus 6 ~~~~l~~~~~~~v~ll~G~d~~l~~e~~~~i~~~~~-~~~~~~~~~~~~~~~-~~~~---~~~~~~~s~----------~ 70 (334)
T COG1466 6 LAKHLKKKNLMPVYLLYGEDEGLLEEAADAILKRAL-ADGFDENYSFFDDSE-LDWA---DLLSELESP----------S 70 (334)
T ss_pred HHHHHhcCCCccEEEEecCChhHHHHHHHHHHHHHh-ccchhhHHhhccccc-CCHH---HHHHHhhcc----------c
Confidence 3444555433 4469999998888888888888774 222222222222222 1222 222222222 2
Q ss_pred CCCCeEEEEEcCCCCCC-HHHHHHHHHHHhhcC-CceEEEEecCcccc---cchhhhcc--ceeEEecCCCHHHHHHHHH
Q 019145 152 PCPPYKIIILDEADSMT-EDAQNALRRTMETYS-KVTRFFFICNYISR---IIEPLASR--CAKFRFKPLSEEVMSSRVL 224 (345)
Q Consensus 152 ~~~~~~iliiDE~~~l~-~~~~~~l~~~le~~~-~~~~ii~~~n~~~~---l~~~l~~r--~~~i~~~~~~~~~~~~~l~ 224 (345)
..++.++++|...+..+ .+....+.......+ ..+.+++.++..++ ..+.+..- +.++.+.+++..++.+|+.
T Consensus 71 lF~~~~~v~l~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~~i~ 150 (334)
T COG1466 71 LFGEKRLVVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVVVECKPLDEAELPQWIK 150 (334)
T ss_pred cccCCeeEEEECCCCCcCchhHHHHHHHHcCCCCCCEEEEEecCCcchHHHHHHHHHHhccCceEecCCCCHHHHHHHHH
Confidence 23455799999888875 555566666666666 55555655644332 22333332 5589999999999999999
Q ss_pred HHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-CCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHH
Q 019145 225 HICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS-SITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKE 303 (345)
Q Consensus 225 ~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~-~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~ 303 (345)
.++++.|+.+++++++.++...+||++.+.+++++++.+.++ .||.++|..++......+.|++.+++.+++...|...
T Consensus 151 ~~~~~~~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~g~~~~a~~~ 230 (334)
T COG1466 151 KRAKELGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLKGDVKKALRL 230 (334)
T ss_pred HHHHHcCCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999999999999999999999999854 7999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHH
Q 019145 304 VNNIIAEGYPASLLLSQVTLLLFVLM 329 (345)
Q Consensus 304 l~~l~~~g~~~~~i~~~l~~~~~~~~ 329 (345)
++.+..+|++|..|++.+.++|+++.
T Consensus 231 l~~L~~~ge~p~~il~~l~~~f~~~~ 256 (334)
T COG1466 231 LRDLLLEGEEPLKLLAALTRQFRLLL 256 (334)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999664
No 123
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.75 E-value=3e-16 Score=134.05 Aligned_cols=122 Identities=20% Similarity=0.254 Sum_probs=104.2
Q ss_pred eEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecC------------cccccchhhhccceeEEecCCCHHHHHHHH
Q 019145 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN------------YISRIIEPLASRCAKFRFKPLSEEVMSSRV 223 (345)
Q Consensus 156 ~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n------------~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l 223 (345)
++|+||||+|+|.-+.+.+|.+.+|+. -...+|++|| .|+.++..|++|.-++...|++.++++.+|
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse-~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi 370 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESE-LAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREII 370 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhcc-cCcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHH
Confidence 469999999999999999999999974 3345667765 356689999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHh----CCCCCHHHHHHhhC
Q 019145 224 LHICNEEGLNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF----GSSITSKDLISVSG 278 (345)
Q Consensus 224 ~~~~~~~~~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~----~~~it~~~v~~~~~ 278 (345)
+.+++.+++.+++++++.+++.. ..++|.++++|.-+...+ +..|..+||+++..
T Consensus 371 ~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~ 430 (450)
T COG1224 371 RIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKE 430 (450)
T ss_pred HHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHH
Confidence 99999999999999999999986 678999999997554444 45799999988743
No 124
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=99.74 E-value=5e-16 Score=130.17 Aligned_cols=188 Identities=12% Similarity=0.127 Sum_probs=131.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCC----------------CCceeeeecC-CccchHHHHHHHHHHHHhhhcCCCC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELY----------------KSRVLELNAS-DDRGINVVRTKIKTFAAVAVGSGQR 147 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~----------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (345)
+||+||+|+||..+|.++++.+.|.... ..++..+.+. ...+.+.+++....+...+..
T Consensus 10 ~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e---- 85 (261)
T PRK05818 10 LLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVE---- 85 (261)
T ss_pred eeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchh----
Confidence 7999999999999999999999876421 1233333222 234566677666665432211
Q ss_pred CCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccceeEEecCC----------CHH
Q 019145 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL----------SEE 217 (345)
Q Consensus 148 ~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~----------~~~ 217 (345)
.+.++|+||+++|.++....++|++.+|++|+++.+|++|+.+..+.++++|||..+.|+++ ++.
T Consensus 86 -----~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~~~~~~ 160 (261)
T PRK05818 86 -----SNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEKKVPFKVESNDR 160 (261)
T ss_pred -----cCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCChhhhcccccccChH
Confidence 13578999999999999999999999999999999999999999999999999999999888 555
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhhCCCCHHHHHHHHH
Q 019145 218 VMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFA 290 (345)
Q Consensus 218 ~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~~~~~~~~~l~~ 290 (345)
++.+.+.... + +++ .++..++|++.++...++.+......-++..++..............++.
T Consensus 161 ~i~~~L~~~~---~--~d~----~i~~~a~g~~~~a~~l~~~l~n~~~~~~~v~kl~~~~~~~~~q~~~~~l~ 224 (261)
T PRK05818 161 YFQYILLSFY---S--VDE----QLQAYNNGSFSKLKNIIETLINKKNKLIQIHKAWILFKTFSYYEIAQLLN 224 (261)
T ss_pred HHHHHHHHcc---C--ccH----HHHHHcCCCHHHHHHHHHHHHcccccHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 5555543222 2 344 66778899999999988854211111233344444444444444433433
No 125
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=8e-17 Score=146.05 Aligned_cols=181 Identities=19% Similarity=0.197 Sum_probs=133.5
Q ss_pred CCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc
Q 019145 58 KQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (345)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (345)
.+|+++-+.+++..+|...+-. ..+..+|||||||||||.+|+++|++. +.+|+.+-++.-
T Consensus 508 VtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa------g~NFisVKGPEL 581 (802)
T KOG0733|consen 508 VTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA------GANFISVKGPEL 581 (802)
T ss_pred CChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc------cCceEeecCHHH
Confidence 3788888888888877776643 234459999999999999999999998 788988877542
Q ss_pred c------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHhhcC--Cc
Q 019145 125 R------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETYS--KV 185 (345)
Q Consensus 125 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le~~~--~~ 185 (345)
. +...++..+...... .+.|||+||+|.|. ....+.|+.-++... ..
T Consensus 582 lNkYVGESErAVR~vFqRAR~s--------------aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~g 647 (802)
T KOG0733|consen 582 LNKYVGESERAVRQVFQRARAS--------------APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRG 647 (802)
T ss_pred HHHHhhhHHHHHHHHHHHhhcC--------------CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccc
Confidence 2 223344555444333 34699999999983 245677887777543 45
Q ss_pred eEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhc------CCCHHHHHH
Q 019145 186 TRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSIS------QGDLRRAIT 255 (345)
Q Consensus 186 ~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~s------~g~~r~~~~ 255 (345)
+.+|.+||.++.+++++++ |++ .+.+.+|+.++...+|+...+..+.++++++ ++.|+... |-|+-.++.
T Consensus 648 V~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvr 727 (802)
T KOG0733|consen 648 VYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVR 727 (802)
T ss_pred eEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHH
Confidence 6778889999999999998 555 6788899999999999999987777777776 78887643 345544444
Q ss_pred HHH
Q 019145 256 YLQ 258 (345)
Q Consensus 256 ~l~ 258 (345)
...
T Consensus 728 eAs 730 (802)
T KOG0733|consen 728 EAS 730 (802)
T ss_pred HHH
Confidence 433
No 126
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.74 E-value=1.3e-16 Score=142.13 Aligned_cols=206 Identities=15% Similarity=0.208 Sum_probs=145.6
Q ss_pred CCcccc-c--cHHHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHH-
Q 019145 59 QVKDVA-H--QEEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT- 132 (345)
Q Consensus 59 ~~~~~~-g--~~~~~~~l~~~l~~~~--~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~- 132 (345)
+|++++ | +.-+......+-...+ .+.++||||+|.|||||++++++.+... ..+..++.+...+. ..+.+..
T Consensus 85 tFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~-~~~a~v~y~~se~f-~~~~v~a~ 162 (408)
T COG0593 85 TFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALAN-GPNARVVYLTSEDF-TNDFVKAL 162 (408)
T ss_pred chhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhh-CCCceEEeccHHHH-HHHHHHHH
Confidence 677666 4 3444455555555432 4559999999999999999999998432 22334554444331 1111111
Q ss_pred ---HHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--HHHHHHHHHHhhcCCce-EEEEecCccc----ccchhh
Q 019145 133 ---KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYSKVT-RFFFICNYIS----RIIEPL 202 (345)
Q Consensus 133 ---~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--~~~~~l~~~le~~~~~~-~ii~~~n~~~----~l~~~l 202 (345)
.+..+.. .. ..++++|||++.+.. ..++.++..++...... .+|++++.+. .+.+.|
T Consensus 163 ~~~~~~~Fk~------------~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL 229 (408)
T COG0593 163 RDNEMEKFKE------------KY-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRL 229 (408)
T ss_pred HhhhHHHHHH------------hh-ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHH
Confidence 1111211 12 346999999999864 45777777777554332 5777775443 356899
Q ss_pred hccce---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh---CCCCCHHHHHHh
Q 019145 203 ASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSKDLISV 276 (345)
Q Consensus 203 ~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~---~~~it~~~v~~~ 276 (345)
+||+. ++.+.||+.+....+|++.++..++.++++++..++.....|+|.+...+.++..++ +..||.+.|.++
T Consensus 230 ~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~ 309 (408)
T COG0593 230 RSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEI 309 (408)
T ss_pred HHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHH
Confidence 99986 899999999999999999999999999999999999999999999999888777665 567999988887
Q ss_pred hCC
Q 019145 277 SGV 279 (345)
Q Consensus 277 ~~~ 279 (345)
+..
T Consensus 310 L~~ 312 (408)
T COG0593 310 LKD 312 (408)
T ss_pred HHH
Confidence 643
No 127
>PRK14700 recombination factor protein RarA; Provisional
Probab=99.73 E-value=2.4e-16 Score=133.65 Aligned_cols=144 Identities=14% Similarity=0.108 Sum_probs=124.1
Q ss_pred ceEEEEec--CcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHh------CCCCCHHHHHHHHHhcCCCHHHHHHH
Q 019145 185 VTRFFFIC--NYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEE------GLNLDAEALSTLSSISQGDLRRAITY 256 (345)
Q Consensus 185 ~~~ii~~~--n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~------~~~i~~~~~~~l~~~s~g~~r~~~~~ 256 (345)
.+.+|-+| |+.+.+.++|+|||.++.|.+++.+++..++++.+... .+.+++++++.|++.++||.|.++|.
T Consensus 8 ~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDaR~aLN~ 87 (300)
T PRK14700 8 KIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDCRKILNL 87 (300)
T ss_pred cEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHHHHHHHH
Confidence 34445444 77889999999999999999999999999999988742 36799999999999999999999999
Q ss_pred HHHHHHHh-C-C--CCCHHHHHHhh----------CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 019145 257 LQGAARLF-G-S--SITSKDLISVS----------GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVT 322 (345)
Q Consensus 257 l~~~~~~~-~-~--~it~~~v~~~~----------~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~ 322 (345)
|+.+.... + . .||.+.|++.+ +..+++.++.++++++++|+++|+.+|..|++.|+||..|.+.|.
T Consensus 88 LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLi 167 (300)
T PRK14700 88 LERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRML 167 (300)
T ss_pred HHHHHhhccccCCCccCHHHHHHHHhHHHhcccCCcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99976533 2 1 28999998776 456889999999999999999999999999999999999999998
Q ss_pred HHHHHH
Q 019145 323 LLLFVL 328 (345)
Q Consensus 323 ~~~~~~ 328 (345)
..-..-
T Consensus 168 i~AsED 173 (300)
T PRK14700 168 CIASED 173 (300)
T ss_pred HHHHhh
Confidence 876644
No 128
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=4.1e-16 Score=134.54 Aligned_cols=180 Identities=23% Similarity=0.255 Sum_probs=122.3
Q ss_pred CCCccccccHHHHHHHHHHHHc---------CC---CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc
Q 019145 58 KQVKDVAHQEEVVRVLTNTLET---------AN---CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (345)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~---------~~---~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (345)
..|+|+.|..++++-|++++-. +- -..+|++||||||||.+|+++|.+. +..|+.++.+.-.
T Consensus 209 ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc------~tTFFNVSsstlt 282 (491)
T KOG0738|consen 209 IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC------GTTFFNVSSSTLT 282 (491)
T ss_pred cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh------cCeEEEechhhhh
Confidence 4788999999998888877632 11 2349999999999999999999998 6778888775432
Q ss_pred c------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC------------HHHHHHHHHHHhhcC----
Q 019145 126 G------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT------------EDAQNALRRTMETYS---- 183 (345)
Q Consensus 126 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~------------~~~~~~l~~~le~~~---- 183 (345)
+ ...++-+++.....++ .+|||||||.+- ..+-+.|+..++...
T Consensus 283 SKwRGeSEKlvRlLFemARfyAP--------------StIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e 348 (491)
T KOG0738|consen 283 SKWRGESEKLVRLLFEMARFYAP--------------STIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLE 348 (491)
T ss_pred hhhccchHHHHHHHHHHHHHhCC--------------ceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccc
Confidence 2 2334434444333332 499999999882 234456666665322
Q ss_pred -Cc-eEEEEecCcccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHhcCCCHHHHHHHHHH
Q 019145 184 -KV-TRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNL-DAEALSTLSSISQGDLRRAITYLQG 259 (345)
Q Consensus 184 -~~-~~ii~~~n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i-~~~~~~~l~~~s~g~~r~~~~~l~~ 259 (345)
.. +-++.+||-+..++.++++|++ .|.++.|+.+.....|+..+. ++.. ++-.++.|++.+.|.-..-+.++++
T Consensus 349 ~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~--~~~~~~~~~~~~lae~~eGySGaDI~nvCr 426 (491)
T KOG0738|consen 349 NSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLR--SVELDDPVNLEDLAERSEGYSGADITNVCR 426 (491)
T ss_pred cceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhc--cccCCCCccHHHHHHHhcCCChHHHHHHHH
Confidence 12 3344457999999999999998 778888888888877766553 3333 3444788888776654444444433
No 129
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=3.4e-16 Score=140.00 Aligned_cols=200 Identities=21% Similarity=0.199 Sum_probs=138.1
Q ss_pred hhCCCCCccccccHHHHHHHHHHH---Hc--------CC-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeec
Q 019145 54 KYRPKQVKDVAHQEEVVRVLTNTL---ET--------AN-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (345)
Q Consensus 54 ~~~p~~~~~~~g~~~~~~~l~~~l---~~--------~~-~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 121 (345)
...-.+|+|+-|-++++++|.+.+ +. |+ +..+||+||||||||.+|+++|-+. +.+|+...+
T Consensus 297 ~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA------~VPFF~~sG 370 (752)
T KOG0734|consen 297 QMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA------GVPFFYASG 370 (752)
T ss_pred hhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc------CCCeEeccc
Confidence 334457999999888887776655 32 22 3459999999999999999999998 778877776
Q ss_pred CCc------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHhhcCC
Q 019145 122 SDD------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETYSK 184 (345)
Q Consensus 122 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le~~~~ 184 (345)
+.. .+...+++.+......+ +.||||||+|... +...+.|+--++....
T Consensus 371 SEFdEm~VGvGArRVRdLF~aAk~~A--------------PcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~q 436 (752)
T KOG0734|consen 371 SEFDEMFVGVGARRVRDLFAAAKARA--------------PCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQ 436 (752)
T ss_pred cchhhhhhcccHHHHHHHHHHHHhcC--------------CeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCc
Confidence 542 23345566655544333 3599999999873 2345666666665443
Q ss_pred --ceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhcCC-CHHHHHHHH
Q 019145 185 --VTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQG-DLRRAITYL 257 (345)
Q Consensus 185 --~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~s~g-~~r~~~~~l 257 (345)
.+++|.+||.++.++++|.+ ||+ .+..+.|+..-..+++..+..+ +.+++++ ...|++-+.| +--++.|++
T Consensus 437 NeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~k--i~~~~~VD~~iiARGT~GFsGAdLaNlV 514 (752)
T KOG0734|consen 437 NEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSK--IPLDEDVDPKIIARGTPGFSGADLANLV 514 (752)
T ss_pred CCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhc--CCcccCCCHhHhccCCCCCchHHHHHHH
Confidence 45566678999999999988 666 7889999999999999888853 5555444 5667776654 233344555
Q ss_pred HHHHHHh----CCCCCHHHHHH
Q 019145 258 QGAARLF----GSSITSKDLIS 275 (345)
Q Consensus 258 ~~~~~~~----~~~it~~~v~~ 275 (345)
..++.++ ...+|+.+++-
T Consensus 515 NqAAlkAa~dga~~VtM~~LE~ 536 (752)
T KOG0734|consen 515 NQAALKAAVDGAEMVTMKHLEF 536 (752)
T ss_pred HHHHHHHHhcCcccccHHHHhh
Confidence 5555444 24588887753
No 130
>PRK06526 transposase; Provisional
Probab=99.71 E-value=5.5e-18 Score=144.45 Aligned_cols=202 Identities=14% Similarity=0.173 Sum_probs=130.9
Q ss_pred CcccccccccCCCCCCCCccccCCc--cccCCCCchHHHhhhccccccCcchhhhhhCCCCCccccc-cHHHHHHHHHHH
Q 019145 1 MRANFGKIHKSGKNKSPNFTQKFST--TQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAH-QEEVVRVLTNTL 77 (345)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g-~~~~~~~l~~~l 77 (345)
|+++|+++...+....+++.+++.. +.|...+.++.+.++++ .+.+|+...+...+|+...+ ....+..+...-
T Consensus 17 ~~~~~~~~~~~a~~~~~~~~e~l~~ll~~E~~~R~~~~~~~~lk---~a~~p~~~~le~fd~~~~~~~~~~~~~~l~~~~ 93 (254)
T PRK06526 17 LAGAVERLAERARAESWSHEEFLAACLQREVAARESHGGEGRIR---AARFPARKSLEEFDFDHQRSLKRDTIAHLGTLD 93 (254)
T ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCCCCCChhhccCccCCCcchHHHHHHhcCc
Confidence 5677888888889999999999887 67888999999999998 78889887777777776555 344444443322
Q ss_pred HcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeE
Q 019145 78 ETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157 (345)
Q Consensus 78 ~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (345)
......+++|+||||||||+++.+++.++... +.. +...+. .. .+....................+.+
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~-g~~--v~f~t~------~~---l~~~l~~~~~~~~~~~~l~~l~~~d 161 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIGLGIRACQA-GHR--VLFATA------AQ---WVARLAAAHHAGRLQAELVKLGRYP 161 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHHHHHHHHHC-CCc--hhhhhH------HH---HHHHHHHHHhcCcHHHHHHHhccCC
Confidence 22345689999999999999999999987322 111 111111 11 1111111000000000001123457
Q ss_pred EEEEcCCCCCC--HHHHHHHHHHHhhcCCceEEEEecCcccc--------------cchhhhccceeEEecCCCHH
Q 019145 158 IIILDEADSMT--EDAQNALRRTMETYSKVTRFFFICNYISR--------------IIEPLASRCAKFRFKPLSEE 217 (345)
Q Consensus 158 iliiDE~~~l~--~~~~~~l~~~le~~~~~~~ii~~~n~~~~--------------l~~~l~~r~~~i~~~~~~~~ 217 (345)
+|||||++.++ ....+.|+++++.......+|+++|.+.. +.+.+..++.++.|...+..
T Consensus 162 lLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~w~~~~~d~~~a~ai~dRl~~~~~~i~~~g~s~R 237 (254)
T PRK06526 162 LLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVISLKGDSYR 237 (254)
T ss_pred EEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHHHHHHcCChHHHHHHHHHHhcCceEEeecCCCcc
Confidence 99999999874 66677889998876656678888876532 23445555667777776543
No 131
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.71 E-value=3.8e-17 Score=160.88 Aligned_cols=201 Identities=22% Similarity=0.292 Sum_probs=136.5
Q ss_pred cccccHHHHHHHHHHHHc------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHH---
Q 019145 62 DVAHQEEVVRVLTNTLET------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT--- 132 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--- 132 (345)
++.|++.+++.+.+++.. ...++++|+||||||||++|+++++.+ +..++.++.........+..
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l------~~~~~~i~~~~~~~~~~i~g~~~ 394 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL------NRKFVRFSLGGVRDEAEIRGHRR 394 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh------cCCeEEEeCCCcccHHHHcCCCC
Confidence 577899999888876642 134568999999999999999999998 56677676543222211110
Q ss_pred ---------HHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHH----HHHHHHHHHhhc---------------CC
Q 019145 133 ---------KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED----AQNALRRTMETY---------------SK 184 (345)
Q Consensus 133 ---------~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~----~~~~l~~~le~~---------------~~ 184 (345)
....+... .....||+|||+|.+.++ ..+.|+++++.. ..
T Consensus 395 ~~~g~~~g~i~~~l~~~------------~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s 462 (775)
T TIGR00763 395 TYVGAMPGRIIQGLKKA------------KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLS 462 (775)
T ss_pred ceeCCCCchHHHHHHHh------------CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccC
Confidence 01111100 112349999999999653 346788887631 03
Q ss_pred ceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHH-----HHhC-----CCCCHHHHHHHHHhcC--CCHHH
Q 019145 185 VTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC-----NEEG-----LNLDAEALSTLSSISQ--GDLRR 252 (345)
Q Consensus 185 ~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~-----~~~~-----~~i~~~~~~~l~~~s~--g~~r~ 252 (345)
++.+|+|+|....+++++++||.++.|++++.++...+++..+ +..| +.++++++..|++... ...|.
T Consensus 463 ~v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~ 542 (775)
T TIGR00763 463 KVIFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRN 542 (775)
T ss_pred CEEEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChH
Confidence 5678899999999999999999999999999999999887754 2233 5689999999987542 23444
Q ss_pred HHHHHHHHHH---H--h--C---------CCCCHHHHHHhhCCC
Q 019145 253 AITYLQGAAR---L--F--G---------SSITSKDLISVSGVI 280 (345)
Q Consensus 253 ~~~~l~~~~~---~--~--~---------~~it~~~v~~~~~~~ 280 (345)
+...++.++. . . + -.|+.+++.++++..
T Consensus 543 l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg~~ 586 (775)
T TIGR00763 543 LERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLGKP 586 (775)
T ss_pred HHHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcCcc
Confidence 4444333321 1 1 1 257888888887754
No 132
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.7e-16 Score=147.07 Aligned_cols=247 Identities=23% Similarity=0.288 Sum_probs=167.9
Q ss_pred cCCCCchHHHhhhccccccCcchhhhhhCCC-C-------C-ccccccHHHHHHHHHHHHc------CCCCcEEEeCCCC
Q 019145 28 SSPEKSEDEVKRKMAPVLQSSQPWVEKYRPK-Q-------V-KDVAHQEEVVRVLTNTLET------ANCPHMLFYGPPG 92 (345)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~-------~-~~~~g~~~~~~~l~~~l~~------~~~~~lll~G~~G 92 (345)
.++.+.+..+-|++-.| .-..||.++-... + + .+-.|-+++++.+.+.+.. -..+.++|+||||
T Consensus 282 m~~~SaE~~ViRnYlDw-ll~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPG 360 (782)
T COG0466 282 MSPMSAEATVIRNYLDW-LLDLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPG 360 (782)
T ss_pred CCCCCchHHHHHHHHHH-HHhCCCccccchhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCC
Confidence 45666666676766555 4566887654322 1 1 2456778888877776643 2345589999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH---
Q 019145 93 TGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--- 169 (345)
Q Consensus 93 ~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--- 169 (345)
+|||++++.+|+.+ +..|+.++-+..+....++..-..+....++.-............++++||+|.++.
T Consensus 361 VGKTSLgkSIA~al------~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~r 434 (782)
T COG0466 361 VGKTSLGKSIAKAL------GRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFR 434 (782)
T ss_pred CCchhHHHHHHHHh------CCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCC
Confidence 99999999999999 788999988776666666544444333322211000001112345999999999965
Q ss_pred -HHHHHHHHHHhhc-------------C--CceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHH-----H
Q 019145 170 -DAQNALRRTMETY-------------S--KVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC-----N 228 (345)
Q Consensus 170 -~~~~~l~~~le~~-------------~--~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~-----~ 228 (345)
+...+|+.+++-- . ..+.||+|+|..+.++.+|++|.+++++..++.+|-.++.++++ +
T Consensus 435 GDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~ 514 (782)
T COG0466 435 GDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLK 514 (782)
T ss_pred CChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHH
Confidence 3456788777521 1 36778899999999999999999999999999999988877643 4
Q ss_pred HhC-----CCCCHHHHHHHHHhc--CCCHHHHHHHHHHHHHHh------C---C--CCCHHHHHHhhCCCC
Q 019145 229 EEG-----LNLDAEALSTLSSIS--QGDLRRAITYLQGAARLF------G---S--SITSKDLISVSGVIP 281 (345)
Q Consensus 229 ~~~-----~~i~~~~~~~l~~~s--~g~~r~~~~~l~~~~~~~------~---~--~it~~~v~~~~~~~~ 281 (345)
.+| +.++++++..|+++. ..-+|.+-..+.+++.-+ + . .|+..++.++++...
T Consensus 515 ~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~~~ 585 (782)
T COG0466 515 EHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGVPV 585 (782)
T ss_pred HcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhCCcc
Confidence 445 458999999998764 222666666665555332 1 1 377778888877643
No 133
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.71 E-value=1.3e-15 Score=138.15 Aligned_cols=206 Identities=20% Similarity=0.219 Sum_probs=130.6
Q ss_pred CCCCCccccccHHHHHHHHHHHHcC-------------CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 56 RPKQVKDVAHQEEVVRVLTNTLETA-------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
...+|+++.|.+..++.+...+... .+.+++|+||||||||++|+++++.+ ...++.+.+.
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l------~~~~~~v~~~ 190 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET------NATFIRVVGS 190 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC------CCCEEecchH
Confidence 3447789999999998888877431 23459999999999999999999998 4456655543
Q ss_pred Cccch--HHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHhh---c--CC
Q 019145 123 DDRGI--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMET---Y--SK 184 (345)
Q Consensus 123 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le~---~--~~ 184 (345)
..... ......+........ ...+.+|+|||+|.+. ...+..+.+++.. . ..
T Consensus 191 ~l~~~~~g~~~~~i~~~f~~a~----------~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 260 (364)
T TIGR01242 191 ELVRKYIGEGARLVREIFELAK----------EKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRG 260 (364)
T ss_pred HHHHHhhhHHHHHHHHHHHHHH----------hcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 21110 000011111111110 0133599999999873 2334445555432 1 34
Q ss_pred ceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC----CHHHHHHHH
Q 019145 185 VTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG----DLRRAITYL 257 (345)
Q Consensus 185 ~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g----~~r~~~~~l 257 (345)
++.+|++||.++.+++++.+ |+. .+.|++|+.++..++++.......+. ++..+..+++.+.| |++.+++..
T Consensus 261 ~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~~~la~~t~g~sg~dl~~l~~~A 339 (364)
T TIGR01242 261 NVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDLEAIAKMTEGASGADLKAICTEA 339 (364)
T ss_pred CEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 67889999999999999986 555 79999999999999998877544332 11236677777654 444433333
Q ss_pred HHHHHHh-CCCCCHHHHHHhhC
Q 019145 258 QGAARLF-GSSITSKDLISVSG 278 (345)
Q Consensus 258 ~~~~~~~-~~~it~~~v~~~~~ 278 (345)
...+... ...|+.+|+.+++.
T Consensus 340 ~~~a~~~~~~~i~~~d~~~a~~ 361 (364)
T TIGR01242 340 GMFAIREERDYVTMDDFIKAVE 361 (364)
T ss_pred HHHHHHhCCCccCHHHHHHHHH
Confidence 2222222 34588888887754
No 134
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.71 E-value=5e-16 Score=134.75 Aligned_cols=105 Identities=25% Similarity=0.296 Sum_probs=80.4
Q ss_pred eEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecC------------cccccchhhhccceeEEecCCCHHHHHHHH
Q 019145 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN------------YISRIIEPLASRCAKFRFKPLSEEVMSSRV 223 (345)
Q Consensus 156 ~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n------------~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l 223 (345)
++|+||||+|+|+-+....|.+.+|.. -...+|++|| .++.++..+++||-++...|++.+++++++
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs~-~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il 357 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALESE-LSPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQIL 357 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTST-T--EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHH
T ss_pred cceEEecchhhccHHHHHHHHHHhcCC-CCcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHH
Confidence 469999999999999999999999974 3445677776 345578899999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHH
Q 019145 224 LHICNEEGLNLDAEALSTLSSIS-QGDLRRAITYLQGAA 261 (345)
Q Consensus 224 ~~~~~~~~~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~ 261 (345)
.-+|+.+++.+++++++.+.+.. ...+|.+++++.-+.
T Consensus 358 ~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a~ 396 (398)
T PF06068_consen 358 KIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPAS 396 (398)
T ss_dssp HHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHHH
T ss_pred HhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhhh
Confidence 99999999999999999999875 678999999886543
No 135
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.70 E-value=4.3e-16 Score=152.13 Aligned_cols=242 Identities=20% Similarity=0.234 Sum_probs=153.2
Q ss_pred CchHHHhhhccccccCcchhhhhhCCCCC----------ccccccHHHHHHHHHHHHc------CCCCcEEEeCCCCCCH
Q 019145 32 KSEDEVKRKMAPVLQSSQPWVEKYRPKQV----------KDVAHQEEVVRVLTNTLET------ANCPHMLFYGPPGTGK 95 (345)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----------~~~~g~~~~~~~l~~~l~~------~~~~~lll~G~~G~GK 95 (345)
..+-.+-|.+-++ --.+||... .+..+ ++..|.+++++.+.+++.. ...+.++|+||||+||
T Consensus 285 ~~e~~~~~~yl~~-~~~~pw~~~-~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GK 362 (784)
T PRK10787 285 SAEATVVRGYIDW-MVQVPWNAR-SKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGK 362 (784)
T ss_pred CchHHHHHHHHHH-HHhCCCCCC-CcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCH
Confidence 3334444444333 345788553 33332 3577889999888877753 2345689999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHH----
Q 019145 96 TTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA---- 171 (345)
Q Consensus 96 T~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~---- 171 (345)
|++++.+++.+ +.+++.++.+.......+......+.....+..............|+++||+|.++++.
T Consensus 363 Ttl~~~ia~~l------~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~ 436 (784)
T PRK10787 363 TSLGQSIAKAT------GRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDP 436 (784)
T ss_pred HHHHHHHHHHh------CCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCH
Confidence 99999999988 56677776655433333322111111000000000000001133599999999998764
Q ss_pred HHHHHHHHhhcC---------------CceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHH-----Hh-
Q 019145 172 QNALRRTMETYS---------------KVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN-----EE- 230 (345)
Q Consensus 172 ~~~l~~~le~~~---------------~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~-----~~- 230 (345)
.+.|+++++... .++.+|+|+|.. .+++++++|+.++.|.+++.++..+++++... +.
T Consensus 437 ~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~ 515 (784)
T PRK10787 437 ASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNA 515 (784)
T ss_pred HHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhC
Confidence 589999987411 456777778776 59999999999999999999999999887763 11
Q ss_pred ----CCCCCHHHHHHHHHhcC--CCHHHHHHHHHHHHHH------hC-----CCCCHHHHHHhhCCCCH
Q 019145 231 ----GLNLDAEALSTLSSISQ--GDLRRAITYLQGAARL------FG-----SSITSKDLISVSGVIPP 282 (345)
Q Consensus 231 ----~~~i~~~~~~~l~~~s~--g~~r~~~~~l~~~~~~------~~-----~~it~~~v~~~~~~~~~ 282 (345)
.+.++++++..|++.+. --.|.+-+.+++.+.. .+ -.|+.+++.++++....
T Consensus 516 l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg~~~~ 584 (784)
T PRK10787 516 LKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQRF 584 (784)
T ss_pred CCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhCCCcc
Confidence 24589999999997542 1133333333333211 12 14899999999987544
No 136
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.3e-15 Score=142.22 Aligned_cols=205 Identities=25% Similarity=0.215 Sum_probs=145.6
Q ss_pred hhCCCCCccccccHHHHHHHHHHHH---c---------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeec
Q 019145 54 KYRPKQVKDVAHQEEVVRVLTNTLE---T---------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (345)
Q Consensus 54 ~~~p~~~~~~~g~~~~~~~l~~~l~---~---------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 121 (345)
.-.+-.|.|+.|-++++..|.+.+. + .-+..+||+||||||||.||+++|.+. +.+|+.+++
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA------gVPF~svSG 377 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA------GVPFFSVSG 377 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc------CCceeeech
Confidence 3345689999999999887777653 2 223459999999999999999999998 889998888
Q ss_pred CCc------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH---------------HHHHHHHHHHh
Q 019145 122 SDD------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE---------------DAQNALRRTME 180 (345)
Q Consensus 122 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~---------------~~~~~l~~~le 180 (345)
++. .+...+++++...... .+.+++|||+|.+.. ..++.|+--++
T Consensus 378 SEFvE~~~g~~asrvr~lf~~ar~~--------------aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emD 443 (774)
T KOG0731|consen 378 SEFVEMFVGVGASRVRDLFPLARKN--------------APSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMD 443 (774)
T ss_pred HHHHHHhcccchHHHHHHHHHhhcc--------------CCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhc
Confidence 652 2233344444443322 345999999998742 23445555555
Q ss_pred hc--CCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHH
Q 019145 181 TY--SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAIT 255 (345)
Q Consensus 181 ~~--~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~ 255 (345)
.. ...+.++.+||.++.+++++++ |++ .+.+..|+......++...++.-....++..+..++..+.|....-+.
T Consensus 444 gf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~ 523 (774)
T KOG0731|consen 444 GFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLA 523 (774)
T ss_pred CCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHH
Confidence 32 3456777789999999999998 555 789999999999999999887766665666677799998776665444
Q ss_pred HH-HHHHHHh----CCCCCHHHHHHhhC
Q 019145 256 YL-QGAARLF----GSSITSKDLISVSG 278 (345)
Q Consensus 256 ~l-~~~~~~~----~~~it~~~v~~~~~ 278 (345)
++ ..++..+ ...|+..++..++.
T Consensus 524 n~~neaa~~a~r~~~~~i~~~~~~~a~~ 551 (774)
T KOG0731|consen 524 NLCNEAALLAARKGLREIGTKDLEYAIE 551 (774)
T ss_pred hhhhHHHHHHHHhccCccchhhHHHHHH
Confidence 44 3333333 34577777766654
No 137
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.68 E-value=1.4e-15 Score=140.36 Aligned_cols=174 Identities=21% Similarity=0.221 Sum_probs=116.8
Q ss_pred hhhCCCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCc
Q 019145 53 EKYRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSR 115 (345)
Q Consensus 53 ~~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~----~~~~~ 115 (345)
+.+.+.+|+++.|.+..++.++..+.. ..+.++|||||||||||++++++++++.... .....
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 455667999999999999888887642 2344599999999999999999999984321 11223
Q ss_pred eeeeecCCc------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH------------HHHHHHHH
Q 019145 116 VLELNASDD------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE------------DAQNALRR 177 (345)
Q Consensus 116 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~------------~~~~~l~~ 177 (345)
++.+..+.. .....++..+....... ....+.||||||+|.+.. ...+.|+.
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a----------~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~ 323 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKA----------SDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLS 323 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHh----------hcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHH
Confidence 333333221 11122233333222211 012346999999998732 12356777
Q ss_pred HHhhcC--CceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH
Q 019145 178 TMETYS--KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE 237 (345)
Q Consensus 178 ~le~~~--~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~ 237 (345)
.++... .++.+|.+||.++.+++++.+ |++ .|+|++|+.++...+++.++.. .++++++
T Consensus 324 ~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~-~l~l~~~ 387 (512)
T TIGR03689 324 ELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD-SLPLDAD 387 (512)
T ss_pred HhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc-cCCchHH
Confidence 776433 467788899999999999998 776 6999999999999999988754 4555433
No 138
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.67 E-value=2.2e-15 Score=148.26 Aligned_cols=174 Identities=21% Similarity=0.248 Sum_probs=125.4
Q ss_pred CCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (345)
..+|+++.|.+.+++.+.+.+.. ..+..+||+||||||||++|+++++++ +.+++.+.+++
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~------~~~fi~v~~~~ 522 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES------GANFIAVRGPE 522 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHH
Confidence 34788999999999888877642 123348999999999999999999998 67788887654
Q ss_pred c------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH------------HHHHHHHHHHhh--cC
Q 019145 124 D------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE------------DAQNALRRTMET--YS 183 (345)
Q Consensus 124 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~------------~~~~~l~~~le~--~~ 183 (345)
. .+...++..+...... .+.+|+|||+|.+.. ...+.|+..++. ..
T Consensus 523 l~~~~vGese~~i~~~f~~A~~~--------------~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~ 588 (733)
T TIGR01243 523 ILSKWVGESEKAIREIFRKARQA--------------APAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL 588 (733)
T ss_pred HhhcccCcHHHHHHHHHHHHHhc--------------CCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence 2 1222344444433222 346999999998731 245667777763 23
Q ss_pred CceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcCCCHHH
Q 019145 184 KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQGDLRR 252 (345)
Q Consensus 184 ~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~~~s~g~~r~ 252 (345)
.++.+|.+||.++.+++++.+ ||+ .+.|++|+.++..++++...+ +..++++ .+..+++.+.|-...
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~--~~~~~~~~~l~~la~~t~g~sga 659 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTR--SMPLAEDVDLEELAEMTEGYTGA 659 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhc--CCCCCccCCHHHHHHHcCCCCHH
Confidence 567788899999999999986 887 789999999999999986654 3444433 478888887664433
No 139
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.67 E-value=1.9e-14 Score=124.22 Aligned_cols=198 Identities=16% Similarity=0.180 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHH---------HHHHH
Q 019145 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT---------KIKTF 137 (345)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 137 (345)
..+.+.+..++..+. +++|+||||||||++|+++++.+ +.+++.+++........+.. ....+
T Consensus 8 ~~l~~~~l~~l~~g~--~vLL~G~~GtGKT~lA~~la~~l------g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~ 79 (262)
T TIGR02640 8 KRVTSRALRYLKSGY--PVHLRGPAGTGKTTLAMHVARKR------DRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQF 79 (262)
T ss_pred HHHHHHHHHHHhcCC--eEEEEcCCCCCHHHHHHHHHHHh------CCCEEEEeCCccCCHHHHhhhhcccchhhHHHHH
Confidence 344566666666554 69999999999999999999977 66777777755333222111 01111
Q ss_pred HHhhhc----CCC--CCCCC--CCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC----------------CceEEEEecC
Q 019145 138 AAVAVG----SGQ--RRGGY--PCPPYKIIILDEADSMTEDAQNALRRTMETYS----------------KVTRFFFICN 193 (345)
Q Consensus 138 ~~~~~~----~~~--~~~~~--~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~----------------~~~~ii~~~n 193 (345)
...... ... ..+.. ......++++||++.++++.++.|+.++++.. +..++|+|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN 159 (262)
T TIGR02640 80 IHNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSN 159 (262)
T ss_pred HHHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeC
Confidence 000000 000 00000 01233599999999999999999999997532 3567888888
Q ss_pred cc-----cccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc----------CCCHHHHHHHHH
Q 019145 194 YI-----SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSIS----------QGDLRRAITYLQ 258 (345)
Q Consensus 194 ~~-----~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s----------~g~~r~~~~~l~ 258 (345)
+. ..+.+++.+||..+.+..|+.++..+++...+ .++++.++.+++.. .-.+|.++...+
T Consensus 160 ~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~-----~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~ 234 (262)
T TIGR02640 160 PVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT-----DVAEDSAATIVRLVREFRASGDEITSGLRASLMIAE 234 (262)
T ss_pred CccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHH
Confidence 65 24688999999999999999999999987654 35667766665432 112788887777
Q ss_pred HHHHHhC-CCCCHHHHHHhh
Q 019145 259 GAARLFG-SSITSKDLISVS 277 (345)
Q Consensus 259 ~~~~~~~-~~it~~~v~~~~ 277 (345)
.++.... ..++.+++.++.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~ 254 (262)
T TIGR02640 235 VATQQDIPVDVDDEDFVDLC 254 (262)
T ss_pred HHHHcCCCCCCCcHHHHHHH
Confidence 7776542 336666666553
No 140
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.66 E-value=7.2e-15 Score=146.16 Aligned_cols=205 Identities=18% Similarity=0.193 Sum_probs=148.2
Q ss_pred chhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC----CCCCCceeeeecCCc
Q 019145 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP----ELYKSRVLELNASDD 124 (345)
Q Consensus 49 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~----~~~~~~~~~~~~~~~ 124 (345)
.+++++.+|..++.++|+++.+..+...+.....++++|+||||||||++++.+++.+... ...+..++.++....
T Consensus 161 ~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l 240 (852)
T TIGR03346 161 RDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGAL 240 (852)
T ss_pred hhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHH
Confidence 3788999999999999999999999999988888899999999999999999999987321 122445555543221
Q ss_pred c----chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------HHHHHHHHHHhhcCCceEEEEec
Q 019145 125 R----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------DAQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 125 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------~~~~~l~~~le~~~~~~~ii~~~ 192 (345)
. ........+......... .....||||||+|.+.. +..+.|...++. ....+|.+|
T Consensus 241 ~a~~~~~g~~e~~l~~~l~~~~~---------~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~--g~i~~IgaT 309 (852)
T TIGR03346 241 IAGAKYRGEFEERLKAVLNEVTK---------SEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR--GELHCIGAT 309 (852)
T ss_pred hhcchhhhhHHHHHHHHHHHHHh---------cCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc--CceEEEEeC
Confidence 0 111122222222221110 01346999999998852 345666666654 456677777
Q ss_pred Ccc-----cccchhhhccceeEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhcCC------CHHHHHHHH
Q 019145 193 NYI-----SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSISQG------DLRRAITYL 257 (345)
Q Consensus 193 n~~-----~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~s~g------~~r~~~~~l 257 (345)
+.. ...++++.+||..+.+++|+.++...+++..... +++.++++++..++..+.+ -+.+++..+
T Consensus 310 t~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidll 389 (852)
T TIGR03346 310 TLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLI 389 (852)
T ss_pred cHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHH
Confidence 644 3468999999999999999999999999876553 5677899999999988753 388899999
Q ss_pred HHHHHHh
Q 019145 258 QGAARLF 264 (345)
Q Consensus 258 ~~~~~~~ 264 (345)
+.++...
T Consensus 390 d~a~a~~ 396 (852)
T TIGR03346 390 DEAAARI 396 (852)
T ss_pred HHHHHHH
Confidence 9887653
No 141
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.66 E-value=2.1e-14 Score=129.96 Aligned_cols=213 Identities=21% Similarity=0.213 Sum_probs=151.0
Q ss_pred CCCccccccHHHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHH
Q 019145 58 KQVKDVAHQEEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (345)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (345)
....+++|+...++.+...+..-. ..+++|+|++||||..+|++|++.- ...+.+|+.+||... +.+.+.+.+-
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S---~R~~~PFVavNcaAi-p~~l~ESELF 213 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQAS---PRAKGPFIAVNCAAI-PENLLESELF 213 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhC---cccCCCceeeecccC-CHHHHHHHhh
Confidence 356789999999998888886533 3359999999999999999998763 334679999999873 4444433222
Q ss_pred HHHH-hhhcCCC-CCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCcc-------
Q 019145 136 TFAA-VAVGSGQ-RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI------- 195 (345)
Q Consensus 136 ~~~~-~~~~~~~-~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~------- 195 (345)
.... ...+... ..+....++.+.||+||+..++-+.|..|++++++.. -+++||.+||..
T Consensus 214 GhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~ 293 (464)
T COG2204 214 GHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAA 293 (464)
T ss_pred cccccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHHc
Confidence 2111 1111111 2334456778899999999999999999999998532 357788888653
Q ss_pred cccchhhhccceeEEecCCCH----HHHH----HHHHHHHHHhCC---CCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHH
Q 019145 196 SRIIEPLASRCAKFRFKPLSE----EVMS----SRVLHICNEEGL---NLDAEALSTLSSIS-QGDLRRAITYLQGAARL 263 (345)
Q Consensus 196 ~~l~~~l~~r~~~i~~~~~~~----~~~~----~~l~~~~~~~~~---~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~ 263 (345)
..+-+.|..|..++.+.-|+- +++. .++++.++..|. .++++++..+..+. .||+|.+.|.++.++..
T Consensus 294 G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il 373 (464)
T COG2204 294 GRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVIL 373 (464)
T ss_pred CCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhc
Confidence 236677788888655544442 4443 344555555544 48999999998875 89999999999999877
Q ss_pred h-CCCCCHHHHH
Q 019145 264 F-GSSITSKDLI 274 (345)
Q Consensus 264 ~-~~~it~~~v~ 274 (345)
+ +..|+.+++.
T Consensus 374 ~~~~~i~~~~l~ 385 (464)
T COG2204 374 SEGPEIEVEDLP 385 (464)
T ss_pred CCccccchhhcc
Confidence 7 4457776644
No 142
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.66 E-value=3.4e-14 Score=123.87 Aligned_cols=227 Identities=16% Similarity=0.181 Sum_probs=136.3
Q ss_pred cchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccch
Q 019145 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI 127 (345)
Q Consensus 48 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 127 (345)
..||.....|..|-.-.++..+...+...+..+ .+.++|+||+|+|||++++.+++.+.... ..+..+........
T Consensus 10 ~~pF~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~l~G~~G~GKTtl~~~l~~~l~~~~---~~~~~~~~~~~~~~ 85 (269)
T TIGR03015 10 TKPFQLLPDPDFFYPSKGHKRAMAYLEYGLSQR-EGFILITGEVGAGKTTLIRNLLKRLDQER---VVAAKLVNTRVDAE 85 (269)
T ss_pred CCCCCCCCCHHHhCCCHHHHHHHHHHHHHHhcC-CCEEEEEcCCCCCHHHHHHHHHHhcCCCC---eEEeeeeCCCCCHH
Confidence 345655555554433334566666666555433 34589999999999999999999874221 11111111111111
Q ss_pred HHHHHHHHHHHHhhhcCCCC-----------CCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc---CCceEEEEecC
Q 019145 128 NVVRTKIKTFAAVAVGSGQR-----------RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY---SKVTRFFFICN 193 (345)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~---~~~~~ii~~~n 193 (345)
+.+......+ ......... ......+...+++|||++.++....+.+..+.+.. ...+.+++++.
T Consensus 86 ~~l~~i~~~l-G~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~ 164 (269)
T TIGR03015 86 DLLRMVAADF-GLETEGRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQ 164 (269)
T ss_pred HHHHHHHHHc-CCCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCC
Confidence 1111111110 000000000 00001234569999999999988777766554421 22344566654
Q ss_pred ccc--c----cchhhhccce-eEEecCCCHHHHHHHHHHHHHHhC----CCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019145 194 YIS--R----IIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEG----LNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (345)
Q Consensus 194 ~~~--~----l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~----~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~ 262 (345)
... . -...+.+|.. .+++++++.+++..++..++...| ..+++++++.|++.|+|++|.+...+..+..
T Consensus 165 ~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~ 244 (269)
T TIGR03015 165 PEFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLL 244 (269)
T ss_pred HHHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 321 1 1234666644 789999999999999999988665 3689999999999999999996666665544
Q ss_pred Hh----CCCCCHHHHHHhhCC
Q 019145 263 LF----GSSITSKDLISVSGV 279 (345)
Q Consensus 263 ~~----~~~it~~~v~~~~~~ 279 (345)
.+ .+.|+.++|..++..
T Consensus 245 ~a~~~~~~~i~~~~v~~~~~~ 265 (269)
T TIGR03015 245 SAFLEEKREIGGEEVREVIAE 265 (269)
T ss_pred HHHHcCCCCCCHHHHHHHHHH
Confidence 33 356999999887654
No 143
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=5.1e-16 Score=143.25 Aligned_cols=223 Identities=20% Similarity=0.276 Sum_probs=146.2
Q ss_pred CCchHHHhhhccccccCcchhhhhhCCCCC----------ccccccHHHHHHHHHHHHcCC------CCcEEEeCCCCCC
Q 019145 31 EKSEDEVKRKMAPVLQSSQPWVEKYRPKQV----------KDVAHQEEVVRVLTNTLETAN------CPHMLFYGPPGTG 94 (345)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----------~~~~g~~~~~~~l~~~l~~~~------~~~lll~G~~G~G 94 (345)
+.++=++.|++-++ ...+||... .+..| ++-.|-+++++.+.+.+..+. .+.++|+||||+|
T Consensus 373 ~~sEfnvtrNYLdw-lt~LPWgk~-S~En~dl~~Ak~iLdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVG 450 (906)
T KOG2004|consen 373 SSSEFNVTRNYLDW-LTSLPWGKS-STENLDLARAKEILDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVG 450 (906)
T ss_pred cccchhHHHHHHHH-HHhCCCCCC-ChhhhhHHHHHHhhcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCC
Confidence 33344444554444 456777542 22232 355677888888888876543 2347999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH----H
Q 019145 95 KTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE----D 170 (345)
Q Consensus 95 KT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~----~ 170 (345)
||++++.+|+.+ +..|+.++-+.-....+++..-..+....++.-..........+.+++|||+|++.. +
T Consensus 451 KTSI~kSIA~AL------nRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGD 524 (906)
T KOG2004|consen 451 KTSIAKSIARAL------NRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGD 524 (906)
T ss_pred cccHHHHHHHHh------CCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCC
Confidence 999999999999 777888877655555444433322222211100000000112345999999999864 3
Q ss_pred HHHHHHHHHhhc------------C---CceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHH-----HHh
Q 019145 171 AQNALRRTMETY------------S---KVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC-----NEE 230 (345)
Q Consensus 171 ~~~~l~~~le~~------------~---~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~-----~~~ 230 (345)
...+|+++++.- + ..+.||+|+|..+.++++|++|.++|++..|..+|-.++..+++ +.+
T Consensus 525 PasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~ 604 (906)
T KOG2004|consen 525 PASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDC 604 (906)
T ss_pred hHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHc
Confidence 456777777521 1 35678889999999999999999999999999999988877754 344
Q ss_pred C-----CCCCHHHHHHHHHhc--CCCHHHHHHHHHHHH
Q 019145 231 G-----LNLDAEALSTLSSIS--QGDLRRAITYLQGAA 261 (345)
Q Consensus 231 ~-----~~i~~~~~~~l~~~s--~g~~r~~~~~l~~~~ 261 (345)
| +.++++++..|+++. ..-+|.+...+++++
T Consensus 605 gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iekI~ 642 (906)
T KOG2004|consen 605 GLKPEQVKISDDALLALIERYCREAGVRNLQKQIEKIC 642 (906)
T ss_pred CCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4 558999988887653 223666666665554
No 144
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.66 E-value=1.1e-14 Score=128.50 Aligned_cols=222 Identities=17% Similarity=0.151 Sum_probs=133.3
Q ss_pred CCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCC---CceeeeecC-C--------
Q 019145 56 RPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYK---SRVLELNAS-D-------- 123 (345)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~---~~~~~~~~~-~-------- 123 (345)
.|..|.+++|+++++..+.-.+-..+..++||+|+||||||++++++++.+.+..... ..+..+.+. +
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 82 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTT 82 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCc
Confidence 4788999999999998887655434456799999999999999999999983211100 011000000 0
Q ss_pred -------------ccchHHHHHHHHHHHHhhhcC-CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC------
Q 019145 124 -------------DRGINVVRTKIKTFAAVAVGS-GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------ 183 (345)
Q Consensus 124 -------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~------ 183 (345)
..+.+.+...+.-......+. ...++....+..++|++||++.++.+.++.|++.+++..
T Consensus 83 ~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~r~ 162 (334)
T PRK13407 83 MIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVERE 162 (334)
T ss_pred ccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCeEEEEC
Confidence 000000000000000000000 011222233556799999999999999999999998642
Q ss_pred -------CceEEEEecCccc-ccchhhhccce-eEEecCCCH-HHHHHHHHHHHH-------------------------
Q 019145 184 -------KVTRFFFICNYIS-RIIEPLASRCA-KFRFKPLSE-EVMSSRVLHICN------------------------- 228 (345)
Q Consensus 184 -------~~~~ii~~~n~~~-~l~~~l~~r~~-~i~~~~~~~-~~~~~~l~~~~~------------------------- 228 (345)
..+.++.++|... .+.+++..||. .+.+.++.. ++..+++.+...
T Consensus 163 G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 242 (334)
T PRK13407 163 GLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILG 242 (334)
T ss_pred CeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHH
Confidence 2334444556533 57889999987 566666655 555555554211
Q ss_pred ----HhCCCCCHHHHHHHHHhc---C-CCHHHHHHHHHHHHHHh---C-CCCCHHHHHHhh
Q 019145 229 ----EEGLNLDAEALSTLSSIS---Q-GDLRRAITYLQGAARLF---G-SSITSKDLISVS 277 (345)
Q Consensus 229 ----~~~~~i~~~~~~~l~~~s---~-g~~r~~~~~l~~~~~~~---~-~~it~~~v~~~~ 277 (345)
-..+.++++.++++++.+ + ..+|..+..+..+...+ | ..|+.+||.++.
T Consensus 243 a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~ 303 (334)
T PRK13407 243 ARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEGAEAVGRSHLRSVA 303 (334)
T ss_pred HHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcCCCeeCHHHHHHHH
Confidence 123568898888887654 2 35777666555444333 4 459999998775
No 145
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.66 E-value=1.2e-14 Score=141.01 Aligned_cols=216 Identities=16% Similarity=0.152 Sum_probs=148.5
Q ss_pred hhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCceeeeecCCcc
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNASDDR 125 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~----~~~~~~~~~~~~~~~ 125 (345)
.+++.-+...++.++|++..+..+...+.....+|++|+||||||||++++.+++.+.... ..+..++.++.....
T Consensus 175 ~l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~ll 254 (758)
T PRK11034 175 NLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL 254 (758)
T ss_pred hHHHHHHcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHh
Confidence 3555557778889999999999999999888888999999999999999999998863221 123334433321100
Q ss_pred ----chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC---------HHHHHHHHHHHhhcCCceEEEEec
Q 019145 126 ----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT---------EDAQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 126 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~---------~~~~~~l~~~le~~~~~~~ii~~~ 192 (345)
........+......... ....+|||||+|.+. .+..+.|..++.. ....+|.+|
T Consensus 255 aG~~~~Ge~e~rl~~l~~~l~~----------~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~vIgAT 322 (758)
T PRK11034 255 AGTKYRGDFEKRFKALLKQLEQ----------DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIGST 322 (758)
T ss_pred cccchhhhHHHHHHHHHHHHHh----------cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEEEecC
Confidence 011122222222111100 123599999999872 2334556666654 456777777
Q ss_pred Cccc-----ccchhhhccceeEEecCCCHHHHHHHHHHHHH----HhCCCCCHHHHHHHHHhcC------CCHHHHHHHH
Q 019145 193 NYIS-----RIIEPLASRCAKFRFKPLSEEVMSSRVLHICN----EEGLNLDAEALSTLSSISQ------GDLRRAITYL 257 (345)
Q Consensus 193 n~~~-----~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~----~~~~~i~~~~~~~l~~~s~------g~~r~~~~~l 257 (345)
+... ..++++.+||+.+.+++|+.++...+|+.... .+++.++++++..+++.+. .-+.+++..+
T Consensus 323 t~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidll 402 (758)
T PRK11034 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVI 402 (758)
T ss_pred ChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHH
Confidence 6542 46899999999999999999999999987554 4678899999999887663 2467899999
Q ss_pred HHHHHHh--------CCCCCHHHHHHhh
Q 019145 258 QGAARLF--------GSSITSKDLISVS 277 (345)
Q Consensus 258 ~~~~~~~--------~~~it~~~v~~~~ 277 (345)
+.++... ...|+.++|.+++
T Consensus 403 dea~a~~~~~~~~~~~~~v~~~~i~~v~ 430 (758)
T PRK11034 403 DEAGARARLMPVSKRKKTVNVADIESVV 430 (758)
T ss_pred HHHHHhhccCcccccccccChhhHHHHH
Confidence 8887533 1237777776664
No 146
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=5.5e-15 Score=120.75 Aligned_cols=155 Identities=21% Similarity=0.275 Sum_probs=112.9
Q ss_pred CCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc-
Q 019145 59 QVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD- 124 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~- 124 (345)
++.++-|-+-.++.+++.+.- ..+..+|+|||||||||.+++++|+.. ...|+.+.++..
T Consensus 153 sy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t------~a~firvvgsefv 226 (408)
T KOG0727|consen 153 SYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT------TAAFIRVVGSEFV 226 (408)
T ss_pred cccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc------chheeeeccHHHH
Confidence 667787776666666666543 344569999999999999999999987 667787776542
Q ss_pred -----cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHhh-----cC
Q 019145 125 -----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMET-----YS 183 (345)
Q Consensus 125 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le~-----~~ 183 (345)
.+...++..+...... ...++||||+|.+. .+++..|+.++.. ..
T Consensus 227 qkylgegprmvrdvfrlaken--------------apsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~ 292 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKEN--------------APSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT 292 (408)
T ss_pred HHHhccCcHHHHHHHHHHhcc--------------CCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc
Confidence 2233344444433222 33599999999873 3456666666653 23
Q ss_pred CceEEEEecCcccccchhhhccce---eEEecCCCHHHHHHHHHHHHHHhCCC
Q 019145 184 KVTRFFFICNYISRIIEPLASRCA---KFRFKPLSEEVMSSRVLHICNEEGLN 233 (345)
Q Consensus 184 ~~~~ii~~~n~~~~l~~~l~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~ 233 (345)
.++.+|+++|..+.++|++.+-+. .++|+-++..+.+-++..++.+.++.
T Consensus 293 ~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls 345 (408)
T KOG0727|consen 293 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS 345 (408)
T ss_pred cceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC
Confidence 578999999999999999998443 79999999999888888888776654
No 147
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.65 E-value=1.2e-15 Score=150.53 Aligned_cols=194 Identities=21% Similarity=0.321 Sum_probs=136.9
Q ss_pred ccccccHHHHHHHHHHHHcC-------CCC--cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHH
Q 019145 61 KDVAHQEEVVRVLTNTLETA-------NCP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~-------~~~--~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (345)
..++||+.++..+.+.+... ..| .++|+||+|||||.+|+++++.+++. ...++.++++.......+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~---~~~~~~~dmse~~~~~~~~ 642 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG---EQNLITINMSEFQEAHTVS 642 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC---CcceEEEeHHHhhhhhhhc
Confidence 46789999999888887541 112 37999999999999999999998543 2356666654422221111
Q ss_pred HHHHHHHHhhhcC------CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCc
Q 019145 132 TKIKTFAAVAVGS------GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNY 194 (345)
Q Consensus 132 ~~~~~~~~~~~~~------~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~ 194 (345)
..+ ..+++. +.........++.||++||++.++++.++.|++++++.. .++.+|+|+|.
T Consensus 643 ~l~----g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 643 RLK----GSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred ccc----CCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence 111 000000 000000112467899999999999999999999999765 67888999863
Q ss_pred c-----------------------------cccchhhhccceeEEecCCCHHHHHHHHHHHHHH-------h-CC--CCC
Q 019145 195 I-----------------------------SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE-------E-GL--NLD 235 (345)
Q Consensus 195 ~-----------------------------~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~-------~-~~--~i~ 235 (345)
. ..+.|++.+|+.++.|.|++.+++.+++...+.. . |+ .++
T Consensus 719 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~ 798 (852)
T TIGR03345 719 GSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYS 798 (852)
T ss_pred chHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEEC
Confidence 1 0156788899999999999999999998876543 1 43 589
Q ss_pred HHHHHHHHHhcCC---CHHHHHHHHHHHH
Q 019145 236 AEALSTLSSISQG---DLRRAITYLQGAA 261 (345)
Q Consensus 236 ~~~~~~l~~~s~g---~~r~~~~~l~~~~ 261 (345)
+++++.|++.+.+ ..|.+.+.++...
T Consensus 799 d~a~~~La~~g~~~~~GAR~L~r~Ie~~i 827 (852)
T TIGR03345 799 EALVEHIVARCTEVESGARNIDAILNQTL 827 (852)
T ss_pred HHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 9999999999876 7888888887643
No 148
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.65 E-value=8.1e-15 Score=139.49 Aligned_cols=217 Identities=20% Similarity=0.244 Sum_probs=150.0
Q ss_pred hhCCCCCccccccHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHH
Q 019145 54 KYRPKQVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (345)
Q Consensus 54 ~~~p~~~~~~~g~~~~~~~l~~~l~~~--~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (345)
+.+..+++.++|+...++.+.+.++.- ...+++|+|++||||+++|+.+++... ....+|+.++|..... ..+.
T Consensus 189 ~~~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~---r~~~pfv~i~c~~~~~-~~~~ 264 (534)
T TIGR01817 189 RRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP---RAKRPFVKVNCAALSE-TLLE 264 (534)
T ss_pred ccccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC---CCCCCeEEeecCCCCH-HHHH
Confidence 455568899999988888877776543 334699999999999999999998742 2356899999986422 2222
Q ss_pred HHHHHHHHhhh-cC-CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCcc---
Q 019145 132 TKIKTFAAVAV-GS-GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI--- 195 (345)
Q Consensus 132 ~~~~~~~~~~~-~~-~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~--- 195 (345)
..+-....... +. ....+....+..+.|+|||++.++...|..|++++++.. .++++|++++..
T Consensus 265 ~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~ 344 (534)
T TIGR01817 265 SELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEE 344 (534)
T ss_pred HHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHH
Confidence 11100000000 00 011222334566799999999999999999999998632 146788887543
Q ss_pred ----cccchhhhccce--eEEecCCC--HHHHHHHHHHHHHH----hC--CCCCHHHHHHHHHhc-CCCHHHHHHHHHHH
Q 019145 196 ----SRIIEPLASRCA--KFRFKPLS--EEVMSSRVLHICNE----EG--LNLDAEALSTLSSIS-QGDLRRAITYLQGA 260 (345)
Q Consensus 196 ----~~l~~~l~~r~~--~i~~~~~~--~~~~~~~l~~~~~~----~~--~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~ 260 (345)
..+.+.+..|+. .+.++|+. .+++..++..++.+ .+ +.+++++++.|..+. .||+|.+.+.++.+
T Consensus 345 ~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a 424 (534)
T TIGR01817 345 AVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERT 424 (534)
T ss_pred HHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 234556667765 56777776 46776666665543 22 568999999999985 99999999999998
Q ss_pred HHHh-CCCCCHHHHH
Q 019145 261 ARLF-GSSITSKDLI 274 (345)
Q Consensus 261 ~~~~-~~~it~~~v~ 274 (345)
+..+ +..|+.+++.
T Consensus 425 ~~~~~~~~I~~~~l~ 439 (534)
T TIGR01817 425 ATLSRSGTITRSDFS 439 (534)
T ss_pred HHhCCCCcccHHHCc
Confidence 8765 4568888764
No 149
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.65 E-value=2.6e-15 Score=130.65 Aligned_cols=148 Identities=16% Similarity=0.213 Sum_probs=109.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeE
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (345)
.++||||||||||.+++++++++ +.+++.+++++. .+...+++.+......... .....
T Consensus 150 gllL~GPPGcGKTllAraiA~el------g~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~---------~~aPc 214 (413)
T PLN00020 150 ILGIWGGKGQGKSFQCELVFKKM------GIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKK---------KGKMS 214 (413)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHc------CCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhc---------cCCCe
Confidence 37999999999999999999999 778888877542 3344566666554432200 12456
Q ss_pred EEEEcCCCCCCHH-----------H-HHHHHHHHhh--------------cCCceEEEEecCcccccchhhhc--cceeE
Q 019145 158 IIILDEADSMTED-----------A-QNALRRTMET--------------YSKVTRFFFICNYISRIIEPLAS--RCAKF 209 (345)
Q Consensus 158 iliiDE~~~l~~~-----------~-~~~l~~~le~--------------~~~~~~ii~~~n~~~~l~~~l~~--r~~~i 209 (345)
||+|||+|.+... . ...|+..++. ....+.+|++||.++.++++|++ |++.+
T Consensus 215 VLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~ 294 (413)
T PLN00020 215 CLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKF 294 (413)
T ss_pred EEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCce
Confidence 9999999976321 1 2456666653 23457789999999999999999 88764
Q ss_pred EecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC
Q 019145 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD 249 (345)
Q Consensus 210 ~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~ 249 (345)
|..|+.++..++++..++..+ ++...+..|++...|-
T Consensus 295 -i~lPd~e~R~eIL~~~~r~~~--l~~~dv~~Lv~~f~gq 331 (413)
T PLN00020 295 -YWAPTREDRIGVVHGIFRDDG--VSREDVVKLVDTFPGQ 331 (413)
T ss_pred -eCCCCHHHHHHHHHHHhccCC--CCHHHHHHHHHcCCCC
Confidence 458999999999999888765 4578888999888764
No 150
>PRK08181 transposase; Validated
Probab=99.65 E-value=8.5e-17 Score=137.75 Aligned_cols=198 Identities=16% Similarity=0.234 Sum_probs=124.2
Q ss_pred CcccccccccCCCCCCCCccccCCc--cccCCCCchHHHhhhccccccCcchhhhhhCCCCCccccc-cHHHHHHHH---
Q 019145 1 MRANFGKIHKSGKNKSPNFTQKFST--TQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAH-QEEVVRVLT--- 74 (345)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g-~~~~~~~l~--- 74 (345)
|+.+|+++...+....+++.+++.. +.|...+.++..+++++ .+.+|....+....|+...+ .+.....+.
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~e~L~~ll~~E~~~R~~~~~~r~lk---~A~~p~~~tle~fd~~~~~~~~~~~~~~L~~~~ 100 (269)
T PRK08181 24 IKTLWPQFAEQADKEGWPAARFLAAIAEHELAERARRRIERHLA---EAHLPPGKTLDSFDFEAVPMVSKAQVMAIAAGD 100 (269)
T ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCCCCHhhCCccCCCCCCHHHHHHHHHHH
Confidence 4567788888888899999999887 67888888888888888 67777654455545544333 234444443
Q ss_pred HHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCC
Q 019145 75 NTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCP 154 (345)
Q Consensus 75 ~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (345)
.|+.. ..+++|+|||||||||++.++++++... +..++.++..+ +...+..... ............
T Consensus 101 ~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~~~---g~~v~f~~~~~------L~~~l~~a~~---~~~~~~~l~~l~ 166 (269)
T PRK08181 101 SWLAK--GANLLLFGPPGGGKSHLAAAIGLALIEN---GWRVLFTRTTD------LVQKLQVARR---ELQLESAIAKLD 166 (269)
T ss_pred HHHhc--CceEEEEecCCCcHHHHHHHHHHHHHHc---CCceeeeeHHH------HHHHHHHHHh---CCcHHHHHHHHh
Confidence 56653 4579999999999999999999987332 22333333211 1111111000 000000000112
Q ss_pred CeEEEEEcCCCCCC--HHHHHHHHHHHhhcCCceEEEEecCcccc--------------cchhhhccceeEEecCCC
Q 019145 155 PYKIIILDEADSMT--EDAQNALRRTMETYSKVTRFFFICNYISR--------------IIEPLASRCAKFRFKPLS 215 (345)
Q Consensus 155 ~~~iliiDE~~~l~--~~~~~~l~~~le~~~~~~~ii~~~n~~~~--------------l~~~l~~r~~~i~~~~~~ 215 (345)
+.++|||||++..+ ......|+++++.......+|+++|.+.. +.+.|..+|.++.|...+
T Consensus 167 ~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~s 243 (269)
T PRK08181 167 KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVES 243 (269)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEecCCcc
Confidence 45699999998874 45567899999877666778999875422 224444455677776654
No 151
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=5.6e-15 Score=140.60 Aligned_cols=191 Identities=29% Similarity=0.375 Sum_probs=138.1
Q ss_pred ccccccHHHHHHHHHHHHcCC---------CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHH
Q 019145 61 KDVAHQEEVVRVLTNTLETAN---------CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~---------~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (345)
..++||++++..+.+.++..+ ..+.+|.||+|+|||.+|+++|..+++. ...++.++++.....+.+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~---e~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD---EQALIRIDMSEYMEKHSVS 567 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC---CccceeechHHHHHHHHHH
Confidence 357899999999999886521 1247999999999999999999999654 3577888887755554443
Q ss_pred HHHHHHHHhhhcC------CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCc
Q 019145 132 TKIKTFAAVAVGS------GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNY 194 (345)
Q Consensus 132 ~~~~~~~~~~~~~------~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~ 194 (345)
..+ ..++++ +..+......++.||++||+++.+++.++.|++++++.. .++.||+|+|-
T Consensus 568 rLI----GaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~ 643 (786)
T COG0542 568 RLI----GAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNA 643 (786)
T ss_pred HHh----CCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEeccc
Confidence 332 223321 112222345678999999999999999999999999643 47888999852
Q ss_pred cc----------------------------ccchhhhccce-eEEecCCCHHHHHHHHHHHHH-------HhCC--CCCH
Q 019145 195 IS----------------------------RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICN-------EEGL--NLDA 236 (345)
Q Consensus 195 ~~----------------------------~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~-------~~~~--~i~~ 236 (345)
-. .+.|+++.|.+ ++.|.+++.+.+.+++..... ..++ .+++
T Consensus 644 Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~ 723 (786)
T COG0542 644 GSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSD 723 (786)
T ss_pred chHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECH
Confidence 10 14577778887 999999999999888877554 3344 4799
Q ss_pred HHHHHHHHhcC---CCHHHHHHHHH
Q 019145 237 EALSTLSSISQ---GDLRRAITYLQ 258 (345)
Q Consensus 237 ~~~~~l~~~s~---g~~r~~~~~l~ 258 (345)
++...|++.+. .-.|-+.+.++
T Consensus 724 ~a~~~l~~~gyd~~~GARpL~R~Iq 748 (786)
T COG0542 724 EAKDFLAEKGYDPEYGARPLRRAIQ 748 (786)
T ss_pred HHHHHHHHhccCCCcCchHHHHHHH
Confidence 99999998763 22444444444
No 152
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.64 E-value=7e-15 Score=142.65 Aligned_cols=175 Identities=22% Similarity=0.291 Sum_probs=123.7
Q ss_pred cccccHHHHHHHHHHHHcC--------C-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHH
Q 019145 62 DVAHQEEVVRVLTNTLETA--------N-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~--------~-~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (345)
.++||++++..+...+... + ..+++|+||||||||.+|+.+++.+ +.+++.++++.......+..
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l------~~~~i~id~se~~~~~~~~~ 532 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL------GIELLRFDMSEYMERHTVSR 532 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh------CCCcEEeechhhcccccHHH
Confidence 5789999999998888731 1 2348999999999999999999998 45777787765433222221
Q ss_pred HHHHHHHhhhcCC-CCCC-----CCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCcc
Q 019145 133 KIKTFAAVAVGSG-QRRG-----GYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI 195 (345)
Q Consensus 133 ~~~~~~~~~~~~~-~~~~-----~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~ 195 (345)
.+. .+.+.. ...+ .....+++||++||++.++++.++.|++++++.. .++.+|+++|..
T Consensus 533 LiG----~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g 608 (758)
T PRK11034 533 LIG----APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAG 608 (758)
T ss_pred HcC----CCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcC
Confidence 111 110000 0000 0112356799999999999999999999998642 356688888722
Q ss_pred -------------------------cccchhhhccce-eEEecCCCHHHHHHHHHHHHH-------HhCC--CCCHHHHH
Q 019145 196 -------------------------SRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICN-------EEGL--NLDAEALS 240 (345)
Q Consensus 196 -------------------------~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~-------~~~~--~i~~~~~~ 240 (345)
..+.|.+..|++ ++.|.|++.+++..++...+. ..|+ .+++++++
T Consensus 609 ~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~ 688 (758)
T PRK11034 609 VRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARD 688 (758)
T ss_pred HHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHH
Confidence 125588888987 899999999999998876553 2344 47999999
Q ss_pred HHHHhc
Q 019145 241 TLSSIS 246 (345)
Q Consensus 241 ~l~~~s 246 (345)
.|++..
T Consensus 689 ~l~~~~ 694 (758)
T PRK11034 689 WLAEKG 694 (758)
T ss_pred HHHHhC
Confidence 999765
No 153
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.1e-14 Score=118.86 Aligned_cols=207 Identities=22% Similarity=0.270 Sum_probs=134.7
Q ss_pred chhhhhhCCCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCc
Q 019145 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSR 115 (345)
Q Consensus 49 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~ 115 (345)
+..+++....+++-+-|.+..++.+++.+.- ..+..+|||||||||||.+|+++++.. ...
T Consensus 135 LMmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht------~c~ 208 (404)
T KOG0728|consen 135 LMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT------DCT 208 (404)
T ss_pred HHhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc------ceE
Confidence 3455565444555444578888888887754 234569999999999999999999987 667
Q ss_pred eeeeecCCc------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHH
Q 019145 116 VLELNASDD------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRT 178 (345)
Q Consensus 116 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~ 178 (345)
|+.++++.. .+...+++.+-.....+ +.++|.||+|.+. .+++..++.+
T Consensus 209 firvsgselvqk~igegsrmvrelfvmareha--------------psiifmdeidsigs~r~e~~~ggdsevqrtmlel 274 (404)
T KOG0728|consen 209 FIRVSGSELVQKYIGEGSRMVRELFVMAREHA--------------PSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLEL 274 (404)
T ss_pred EEEechHHHHHHHhhhhHHHHHHHHHHHHhcC--------------CceEeeecccccccccccCCCCccHHHHHHHHHH
Confidence 888877542 22223334333333222 3599999999883 3566677777
Q ss_pred Hhhc-----CCceEEEEecCcccccchhhhccce---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCH
Q 019145 179 METY-----SKVTRFFFICNYISRIIEPLASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDL 250 (345)
Q Consensus 179 le~~-----~~~~~ii~~~n~~~~l~~~l~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~ 250 (345)
+... ..+..+|++||..+-+++++.+-.. .++|+||+.+...++++-..++.++. -.-.+..|++.-.|-.
T Consensus 275 lnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~-rgi~l~kiaekm~gas 353 (404)
T KOG0728|consen 275 LNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT-RGINLRKIAEKMPGAS 353 (404)
T ss_pred HHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchh-cccCHHHHHHhCCCCc
Confidence 6643 3578899999999999999998554 79999999999999988776654432 1112455665543322
Q ss_pred H-HHHHHHHHHHHHh----CCCCCHHHHHHh
Q 019145 251 R-RAITYLQGAARLF----GSSITSKDLISV 276 (345)
Q Consensus 251 r-~~~~~l~~~~~~~----~~~it~~~v~~~ 276 (345)
. .....+..+..++ .-.+|.+|.+-+
T Consensus 354 gaevk~vcteagm~alrerrvhvtqedfema 384 (404)
T KOG0728|consen 354 GAEVKGVCTEAGMYALRERRVHVTQEDFEMA 384 (404)
T ss_pred cchhhhhhhhhhHHHHHHhhccccHHHHHHH
Confidence 2 2222333333333 123666665444
No 154
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.64 E-value=1.2e-14 Score=143.93 Aligned_cols=200 Identities=19% Similarity=0.195 Sum_probs=146.5
Q ss_pred chhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCceeeeecCCc
Q 019145 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNASDD 124 (345)
Q Consensus 49 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~----~~~~~~~~~~~~~~ 124 (345)
.+++++.+|..++.++|+++.+..+...+.....++++|+||||||||++++.++..+.... ..+..++.++....
T Consensus 166 ~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l 245 (857)
T PRK10865 166 IDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL 245 (857)
T ss_pred hhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhh
Confidence 47888999999999999999999999999998888999999999999999999999984311 22456666554331
Q ss_pred c----chH----HHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------HHHHHHHHHHhhcCCceEE
Q 019145 125 R----GIN----VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------DAQNALRRTMETYSKVTRF 188 (345)
Q Consensus 125 ~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------~~~~~l~~~le~~~~~~~i 188 (345)
. ... .+...+...... ....||||||+|.+.. +..+.|...+++ +...+
T Consensus 246 ~ag~~~~g~~e~~lk~~~~~~~~~-------------~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~--g~l~~ 310 (857)
T PRK10865 246 VAGAKYRGEFEERLKGVLNDLAKQ-------------EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHC 310 (857)
T ss_pred hhccchhhhhHHHHHHHHHHHHHc-------------CCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc--CCCeE
Confidence 1 111 223333322111 1345999999999853 356777777765 46677
Q ss_pred EEecCccc-----ccchhhhccceeEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhcC------CCHHHH
Q 019145 189 FFICNYIS-----RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSISQ------GDLRRA 253 (345)
Q Consensus 189 i~~~n~~~-----~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~s~------g~~r~~ 253 (345)
|.+|+... ..++++.+||+.+.+..|+.++...+++..... +++.++++++...+..+. --+.++
T Consensus 311 IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkA 390 (857)
T PRK10865 311 VGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKA 390 (857)
T ss_pred EEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHH
Confidence 77776543 478999999998999999999999988776543 467788999888766653 346677
Q ss_pred HHHHHHHHHH
Q 019145 254 ITYLQGAARL 263 (345)
Q Consensus 254 ~~~l~~~~~~ 263 (345)
+..++.++..
T Consensus 391 i~LiD~aaa~ 400 (857)
T PRK10865 391 IDLIDEAASS 400 (857)
T ss_pred HHHHHHHhcc
Confidence 8877777654
No 155
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=7.6e-15 Score=136.61 Aligned_cols=184 Identities=23% Similarity=0.262 Sum_probs=129.7
Q ss_pred hhhhhCCCCCccccccHHHHHHHHHHHHc----------C--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceee
Q 019145 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLET----------A--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE 118 (345)
Q Consensus 51 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~----------~--~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~ 118 (345)
.+.|.---+|+|+-|-++++..+.+.|.. + ....+|||||||||||.+|+++|.++ +.+|+.
T Consensus 662 GAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc------sL~FlS 735 (953)
T KOG0736|consen 662 GAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC------SLNFLS 735 (953)
T ss_pred CCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc------eeeEEe
Confidence 34444445999999999999999887754 1 12349999999999999999999998 777777
Q ss_pred eecCC------ccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH-------------HHHHHHHHHH
Q 019145 119 LNASD------DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-------------DAQNALRRTM 179 (345)
Q Consensus 119 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~-------------~~~~~l~~~l 179 (345)
+.++. ..+...+++.++..... .+.|||+||+|.+.+ .....|+.-+
T Consensus 736 VKGPELLNMYVGqSE~NVR~VFerAR~A--------------~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAEL 801 (953)
T KOG0736|consen 736 VKGPELLNMYVGQSEENVREVFERARSA--------------APCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAEL 801 (953)
T ss_pred ecCHHHHHHHhcchHHHHHHHHHHhhcc--------------CCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHh
Confidence 76543 34556777777776554 446999999999953 2345566666
Q ss_pred hhcC----CceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhc-----
Q 019145 180 ETYS----KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSIS----- 246 (345)
Q Consensus 180 e~~~----~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~s----- 246 (345)
+..+ ..+.+|-+||+++.+++++.+ ||+ .++..+.+.++-+..+.+... ..+.+++++ +..|++.|
T Consensus 802 Dgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlT-rkFkLdedVdL~eiAk~cp~~~T 880 (953)
T KOG0736|consen 802 DGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALT-RKFKLDEDVDLVEIAKKCPPNMT 880 (953)
T ss_pred hcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHH-HHccCCCCcCHHHHHhhCCcCCc
Confidence 5433 456677789999999999998 677 566777665555544444332 234566665 77888776
Q ss_pred CCCHHHHHH
Q 019145 247 QGDLRRAIT 255 (345)
Q Consensus 247 ~g~~r~~~~ 255 (345)
|-|+..++.
T Consensus 881 GADlYsLCS 889 (953)
T KOG0736|consen 881 GADLYSLCS 889 (953)
T ss_pred hhHHHHHHH
Confidence 456655443
No 156
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.63 E-value=1.5e-14 Score=139.52 Aligned_cols=204 Identities=20% Similarity=0.149 Sum_probs=138.0
Q ss_pred hhhCCCCCccccccHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeee
Q 019145 53 EKYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (345)
Q Consensus 53 ~~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 120 (345)
+.....+|.++.|....+..+.+.+.- ..+++++|+||||||||++++++++++ +.+++.++
T Consensus 144 ~~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~------~~~f~~is 217 (644)
T PRK10733 144 EDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA------KVPFFTIS 217 (644)
T ss_pred chhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc------CCCEEEEe
Confidence 334456788888887777666554421 123459999999999999999999998 66777777
Q ss_pred cCCcc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------------HHHHHHHHHHh
Q 019145 121 ASDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTME 180 (345)
Q Consensus 121 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------------~~~~~l~~~le 180 (345)
+.+.. +...++..+..... ..+.+|||||+|.+.. ...+.++..++
T Consensus 218 ~~~~~~~~~g~~~~~~~~~f~~a~~--------------~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~md 283 (644)
T PRK10733 218 GSDFVEMFVGVGASRVRDMFEQAKK--------------AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMD 283 (644)
T ss_pred hHHhHHhhhcccHHHHHHHHHHHHh--------------cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhh
Confidence 65421 22233333333211 1335999999998832 13455555565
Q ss_pred hcC--CceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC----CHH
Q 019145 181 TYS--KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG----DLR 251 (345)
Q Consensus 181 ~~~--~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g----~~r 251 (345)
... ..+.+|.+||.++.+++++.+ |++ .+.|+.|+.++..++++..+....+. .+..+..+++.+.| |+.
T Consensus 284 g~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~-~~~d~~~la~~t~G~sgadl~ 362 (644)
T PRK10733 284 GFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLA 362 (644)
T ss_pred cccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCC-CcCCHHHHHhhCCCCCHHHHH
Confidence 433 356777889999999999986 776 78999999999999999888654332 12235678887766 666
Q ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHhh
Q 019145 252 RAITYLQGAARLFG-SSITSKDLISVS 277 (345)
Q Consensus 252 ~~~~~l~~~~~~~~-~~it~~~v~~~~ 277 (345)
.+++.....+...+ ..|+..++.++.
T Consensus 363 ~l~~eAa~~a~r~~~~~i~~~d~~~a~ 389 (644)
T PRK10733 363 NLVNEAALFAARGNKRVVSMVEFEKAK 389 (644)
T ss_pred HHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 66666555444333 458898887654
No 157
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.63 E-value=1.6e-13 Score=122.07 Aligned_cols=210 Identities=19% Similarity=0.200 Sum_probs=140.0
Q ss_pred CCccccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHH
Q 019145 59 QVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (345)
.+++++|....+..+.+.+.. ....+++|+|++||||+++|+++.... .....+|+.++|.... ...+...+-.
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s---~r~~~pfv~v~c~~~~-~~~~~~~lfg 79 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLS---SRWQGPFISLNCAALN-ENLLDSELFG 79 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhC---CccCCCeEEEeCCCCC-HHHHHHHHcc
Confidence 456789988887777666654 233459999999999999999998653 2235689999998742 2222222111
Q ss_pred HHHhh-hcC-CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCcc-------c
Q 019145 137 FAAVA-VGS-GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------S 196 (345)
Q Consensus 137 ~~~~~-~~~-~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~-------~ 196 (345)
..... .+. ....+....+..+.|+|||++.++...|..|+.++++.. .++++|++++.. .
T Consensus 80 ~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g 159 (326)
T PRK11608 80 HEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEG 159 (326)
T ss_pred ccccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcC
Confidence 00000 000 001122234556799999999999999999999997532 246788877543 2
Q ss_pred ccchhhhccce--eEEecCCCH--HHHHHHHHHH----HHHhC----CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHH
Q 019145 197 RIIEPLASRCA--KFRFKPLSE--EVMSSRVLHI----CNEEG----LNLDAEALSTLSSIS-QGDLRRAITYLQGAARL 263 (345)
Q Consensus 197 ~l~~~l~~r~~--~i~~~~~~~--~~~~~~l~~~----~~~~~----~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~ 263 (345)
.+.+.+..++. .+.++|+.. +|+..++..+ +.+.+ ..+++++++.|..+. .||+|.+.+.++.++..
T Consensus 160 ~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 160 KFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred CchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 45577777875 677777754 5666555554 33333 248999999999876 89999999999998866
Q ss_pred h-CCCCCHHH
Q 019145 264 F-GSSITSKD 272 (345)
Q Consensus 264 ~-~~~it~~~ 272 (345)
+ +..++.++
T Consensus 240 ~~~~~~~~~~ 249 (326)
T PRK11608 240 HGTSEYPLDN 249 (326)
T ss_pred cCCCCCchhh
Confidence 5 33454443
No 158
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.63 E-value=1.3e-13 Score=129.17 Aligned_cols=216 Identities=17% Similarity=0.165 Sum_probs=146.1
Q ss_pred CCCCccccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHH
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI 134 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (345)
..+|++++|....++.+.+.+.. ....+++|+|++||||+++|+.+++.- ...+.+|+.+||..... ..+...+
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S---~r~~~pfv~inC~~l~e-~lleseL 283 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLS---GRRDFPFVAINCGAIAE-SLLEAEL 283 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhc---CcCCCCEEEeccccCCh-hHHHHHh
Confidence 35788999999888888877753 334569999999999999999998763 23467899999986422 2222211
Q ss_pred HHHHHhhhcCC---CCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCccc----
Q 019145 135 KTFAAVAVGSG---QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS---- 196 (345)
Q Consensus 135 ~~~~~~~~~~~---~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~~---- 196 (345)
-.......... ...+....+..+.||+||++.++...|..|++++++.. .++++|++++...
T Consensus 284 FG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v 363 (526)
T TIGR02329 284 FGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAV 363 (526)
T ss_pred cCCcccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHh
Confidence 11100000000 01111223556799999999999999999999998642 2347888875432
Q ss_pred ---ccchhhhccce--eEEecCCCH--HHHHHHHHHHHH----HhCCCCCHHHHHH-------HHHhc-CCCHHHHHHHH
Q 019145 197 ---RIIEPLASRCA--KFRFKPLSE--EVMSSRVLHICN----EEGLNLDAEALST-------LSSIS-QGDLRRAITYL 257 (345)
Q Consensus 197 ---~l~~~l~~r~~--~i~~~~~~~--~~~~~~l~~~~~----~~~~~i~~~~~~~-------l~~~s-~g~~r~~~~~l 257 (345)
.+.+.+..|+. .+.++|+.+ +|+..++..++. ..++.+++++++. |..+. .||+|.+.|.+
T Consensus 364 ~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvi 443 (526)
T TIGR02329 364 QQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLV 443 (526)
T ss_pred hhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHH
Confidence 24445666665 677777754 566655555443 4466799999887 76654 89999999999
Q ss_pred HHHHHHh----CCCCCHHHHHHh
Q 019145 258 QGAARLF----GSSITSKDLISV 276 (345)
Q Consensus 258 ~~~~~~~----~~~it~~~v~~~ 276 (345)
+.++... +..|+.+++...
T Consensus 444 er~~i~~~~~~~~~I~~~~l~~~ 466 (526)
T TIGR02329 444 ERLALELSAMPAGALTPDVLRAL 466 (526)
T ss_pred HHHHHhcccCCCCccCHHHhhhh
Confidence 9988764 346888886543
No 159
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.8e-14 Score=127.60 Aligned_cols=198 Identities=15% Similarity=0.198 Sum_probs=133.8
Q ss_pred hCCCCCccccccHHHHHHH----HHHHHcC-------C--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeec
Q 019145 55 YRPKQVKDVAHQEEVVRVL----TNTLETA-------N--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (345)
Q Consensus 55 ~~p~~~~~~~g~~~~~~~l----~~~l~~~-------~--~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 121 (345)
.+|.+|+-++-.++.++.| ...++.. . ....|||||||||||+++.|+|+.+ +++++.++-
T Consensus 195 ~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L------~ydIydLeL 268 (457)
T KOG0743|consen 195 PHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYL------NYDIYDLEL 268 (457)
T ss_pred CCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhc------CCceEEeee
Confidence 4677888888666655544 4444331 1 2349999999999999999999999 888888887
Q ss_pred CCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-------H-----------HHHHHHHHHHhhcC
Q 019145 122 SDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-------E-----------DAQNALRRTMETYS 183 (345)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-------~-----------~~~~~l~~~le~~~ 183 (345)
+......+++.++... .+..||+|+|+|.-. + -....|++.++..-
T Consensus 269 t~v~~n~dLr~LL~~t----------------~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlw 332 (457)
T KOG0743|consen 269 TEVKLDSDLRHLLLAT----------------PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLW 332 (457)
T ss_pred ccccCcHHHHHHHHhC----------------CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhcccc
Confidence 6655555566665543 244699999998751 0 12456888888543
Q ss_pred ----CceEEEEecCcccccchhhhccce---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHH
Q 019145 184 ----KVTRFFFICNYISRIIEPLASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITY 256 (345)
Q Consensus 184 ----~~~~ii~~~n~~~~l~~~l~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~ 256 (345)
...++|+|||..++++|+|.+++. .+++.-.+.+..+....++..... +......|.+
T Consensus 333 Sscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~---~h~L~~eie~------------ 397 (457)
T KOG0743|consen 333 SSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE---DHRLFDEIER------------ 397 (457)
T ss_pred ccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC---CcchhHHHHH------------
Confidence 245789999999999999999554 688888899999988887763322 2333333322
Q ss_pred HHHHHHHhCCCCCHHHHHHhhCCC---CHHHHHHHHHHHHc
Q 019145 257 LQGAARLFGSSITSKDLISVSGVI---PPEVVEGLFAVCRS 294 (345)
Q Consensus 257 l~~~~~~~~~~it~~~v~~~~~~~---~~~~~~~l~~~~~~ 294 (345)
...+..+|+++|.+.+-.. .+..+..+++++..
T Consensus 398 -----l~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~ 433 (457)
T KOG0743|consen 398 -----LIEETEVTPAQVAEELMKNKNDADVALKGLVEALES 433 (457)
T ss_pred -----HhhcCccCHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence 1124558888887665332 23344555554443
No 160
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.62 E-value=1.4e-13 Score=128.78 Aligned_cols=216 Identities=18% Similarity=0.191 Sum_probs=143.5
Q ss_pred CCCccccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcC-----CCCCCCceeeeecCCccchHHH
Q 019145 58 KQVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFG-----PELYKSRVLELNASDDRGINVV 130 (345)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~-----~~~~~~~~~~~~~~~~~~~~~~ 130 (345)
..|++++|+...+..+...+.. ....+++|+|++||||+.+|+.+.+.+.. ....+.+|+.+||.... ...+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~-e~ll 294 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIA-ESLL 294 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCC-hhhH
Confidence 4688999999888888877754 33446999999999999999999987320 12346789999998642 2222
Q ss_pred HHHHHHHHHhhhcCC---CCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCccc
Q 019145 131 RTKIKTFAAVAVGSG---QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS 196 (345)
Q Consensus 131 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~~ 196 (345)
...+-.......... .+.+....+..+.|||||++.++...|..|++++++.. .++++|++++..-
T Consensus 295 eseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L 374 (538)
T PRK15424 295 EAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDL 374 (538)
T ss_pred HHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCCH
Confidence 222111111000000 11222234567799999999999999999999998632 2457888876432
Q ss_pred -------ccchhhhccce--eEEecCCCH--HHHHHHHHHHHHH----hCCCCCHHHH-------HHHHHh-cCCCHHHH
Q 019145 197 -------RIIEPLASRCA--KFRFKPLSE--EVMSSRVLHICNE----EGLNLDAEAL-------STLSSI-SQGDLRRA 253 (345)
Q Consensus 197 -------~l~~~l~~r~~--~i~~~~~~~--~~~~~~l~~~~~~----~~~~i~~~~~-------~~l~~~-s~g~~r~~ 253 (345)
.+.+.+..|+. .+.++|+.+ +|+..++..++.+ .+.+++++++ +.|..+ ..||+|.+
T Consensus 375 ~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL 454 (538)
T PRK15424 375 EEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVREL 454 (538)
T ss_pred HHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHH
Confidence 23345666665 566777654 5676666665543 5667888776 445554 48999999
Q ss_pred HHHHHHHHHHhC----CCCCHHHHH
Q 019145 254 ITYLQGAARLFG----SSITSKDLI 274 (345)
Q Consensus 254 ~~~l~~~~~~~~----~~it~~~v~ 274 (345)
.|.++.++.+.. ..|+.+++.
T Consensus 455 ~nvier~~i~~~~~~~~~i~~~~l~ 479 (538)
T PRK15424 455 RNLMERLALFLSVEPTPDLTPQFLQ 479 (538)
T ss_pred HHHHHHHHHhcCCCCcCccCHHHhh
Confidence 999999887653 346766654
No 161
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.62 E-value=2.8e-14 Score=126.76 Aligned_cols=206 Identities=18% Similarity=0.200 Sum_probs=137.8
Q ss_pred ccccHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHh
Q 019145 63 VAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140 (345)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~--~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (345)
++|+...++.+.+.+..- ...+++|+|++||||+++|++++... .....+|+.++|.... ...+...+-.....
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s---~r~~~pfv~vnc~~~~-~~~l~~~lfG~~~g 76 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS---KRWQGPLVKLNCAALS-ENLLDSELFGHEAG 76 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc---CccCCCeEEEeCCCCC-hHHHHHHHhccccc
Confidence 356666666655555442 23459999999999999999998764 2235689999998632 22222211110000
Q ss_pred hh-c-CCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCcc-------cccch
Q 019145 141 AV-G-SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------SRIIE 200 (345)
Q Consensus 141 ~~-~-~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~-------~~l~~ 200 (345)
.. + .....+....+..+.|+|||++.++...|..|+.++++.. .++++|++++.. ..+.+
T Consensus 77 ~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~ 156 (329)
T TIGR02974 77 AFTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRA 156 (329)
T ss_pred cccCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHH
Confidence 00 0 0011222334567899999999999999999999998643 346788887643 23557
Q ss_pred hhhccce--eEEecCCC--HHHHHHHHHHHHH----HhC----CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhC-C
Q 019145 201 PLASRCA--KFRFKPLS--EEVMSSRVLHICN----EEG----LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLFG-S 266 (345)
Q Consensus 201 ~l~~r~~--~i~~~~~~--~~~~~~~l~~~~~----~~~----~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~~-~ 266 (345)
.|..|+. .+.++|+. .+|+..++..++. +.+ ..+++++++.|..+. .||+|.+.|.++.++..+. .
T Consensus 157 dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~~~~ 236 (329)
T TIGR02974 157 DLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRHGLE 236 (329)
T ss_pred HHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCC
Confidence 7778875 57777776 4667666655443 333 358999999999987 9999999999999887763 4
Q ss_pred CCCHHH
Q 019145 267 SITSKD 272 (345)
Q Consensus 267 ~it~~~ 272 (345)
.++.++
T Consensus 237 ~~~~~~ 242 (329)
T TIGR02974 237 EAPIDE 242 (329)
T ss_pred ccchhh
Confidence 455554
No 162
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.62 E-value=6.5e-14 Score=129.54 Aligned_cols=265 Identities=17% Similarity=0.161 Sum_probs=166.2
Q ss_pred ccHHHHHHHHHHHHc-----CCCCcEEEeCCCCCCHHHHHHHHHHHhc----CCCCCCCceeeeecCCccchHHHHHHHH
Q 019145 65 HQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLF----GPELYKSRVLELNASDDRGINVVRTKIK 135 (345)
Q Consensus 65 g~~~~~~~l~~~l~~-----~~~~~lll~G~~G~GKT~la~~la~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (345)
+++.....|...++. +....++++|-||||||++++.+.+.+. ......+.++++|+-.-.+...+...+-
T Consensus 400 cRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~ 479 (767)
T KOG1514|consen 400 CRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIW 479 (767)
T ss_pred chhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHH
Confidence 444444555444433 2223479999999999999999999875 2345678999999977666555544443
Q ss_pred HHHHh-hhcCCC--------CCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC---CceEEEEecCcccc----cc
Q 019145 136 TFAAV-AVGSGQ--------RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS---KVTRFFFICNYISR----II 199 (345)
Q Consensus 136 ~~~~~-~~~~~~--------~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~---~~~~ii~~~n~~~~----l~ 199 (345)
..... ...... ........+..||+|||+|.|-...|+.|.++++++. ....+|.++|..+. +.
T Consensus 480 ~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~ 559 (767)
T KOG1514|consen 480 EALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLM 559 (767)
T ss_pred HhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHHHHhc
Confidence 21111 000000 0011233456799999999998888888888888765 35566777776653 23
Q ss_pred hhhhccce--eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCC--------
Q 019145 200 EPLASRCA--KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSIS---QGDLRRAITYLQGAARLFGS-------- 266 (345)
Q Consensus 200 ~~l~~r~~--~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s---~g~~r~~~~~l~~~~~~~~~-------- 266 (345)
..+.+|.. .+.|.|++.+++.+++..+++.- ..+++++++.+++.. .||.|+++..++.++..++.
T Consensus 560 nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~ 638 (767)
T KOG1514|consen 560 NRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLA 638 (767)
T ss_pred cchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhccccccc
Confidence 34445544 89999999999999999888654 347899999998754 89999999999999877632
Q ss_pred ---CCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhh
Q 019145 267 ---SITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQ 331 (345)
Q Consensus 267 ---~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~ 331 (345)
.|+..+|.+++...........+.-+.--..--...+...+...|. ....+..+..++..++..
T Consensus 639 ~~q~v~~~~v~~Ai~em~~~~~~~~i~glS~~~k~fl~ai~~e~~~~g~-~e~~~~~v~~~~~~i~~~ 705 (767)
T KOG1514|consen 639 VSQLVGILHVMEAINEMLASPYIKALKGLSFLQKIFLTAIVAETEGTGL-EEATLDEVYSEVVTICRK 705 (767)
T ss_pred ccceeehHHHHHHHHHHhhhhHHHHhcchHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHHHh
Confidence 2566777776655444333333221111111111122233333332 335555566666666543
No 163
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.4e-14 Score=134.18 Aligned_cols=203 Identities=21% Similarity=0.217 Sum_probs=140.0
Q ss_pred CCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (345)
..+|.++.|.......+...+.. .....+||+||||||||++|++++++. +.+|+.+..++
T Consensus 238 ~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~------~~~fi~v~~~~ 311 (494)
T COG0464 238 DVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES------RSRFISVKGSE 311 (494)
T ss_pred CcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC------CCeEEEeeCHH
Confidence 34777888877777666655522 122348999999999999999999987 77888888764
Q ss_pred ccc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHh--hcCC
Q 019145 124 DRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTME--TYSK 184 (345)
Q Consensus 124 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le--~~~~ 184 (345)
..+ ...++..+...... ...+|++||+|.+. ....+.++..++ +...
T Consensus 312 l~sk~vGesek~ir~~F~~A~~~--------------~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~ 377 (494)
T COG0464 312 LLSKWVGESEKNIRELFEKARKL--------------APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAE 377 (494)
T ss_pred HhccccchHHHHHHHHHHHHHcC--------------CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccC
Confidence 322 23344444443322 34599999999883 245667777775 3345
Q ss_pred ceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHhcCCCHHH-HHHHHHH
Q 019145 185 VTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNL-DAEALSTLSSISQGDLRR-AITYLQG 259 (345)
Q Consensus 185 ~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i-~~~~~~~l~~~s~g~~r~-~~~~l~~ 259 (345)
++.+|.+||.++.+++++.+ |++ .+.|++|+.++..++++.........+ ++-.++.+++.+.|.... +...++.
T Consensus 378 ~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~e 457 (494)
T COG0464 378 GVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVRE 457 (494)
T ss_pred ceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHH
Confidence 56678889999999999999 887 899999999999999999987666543 445577788766553333 3333333
Q ss_pred HHHHh-----CCCCCHHHHHHhhCC
Q 019145 260 AARLF-----GSSITSKDLISVSGV 279 (345)
Q Consensus 260 ~~~~~-----~~~it~~~v~~~~~~ 279 (345)
++..+ ...||.++..+++..
T Consensus 458 a~~~~~~~~~~~~~~~~~~~~a~~~ 482 (494)
T COG0464 458 AALEALREARRREVTLDDFLDALKK 482 (494)
T ss_pred HHHHHHHHhccCCccHHHHHHHHHh
Confidence 33322 235777777666554
No 164
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1.1e-14 Score=125.42 Aligned_cols=191 Identities=24% Similarity=0.249 Sum_probs=130.5
Q ss_pred CCCCCccccccHHHHHHHHHHHHc--------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeec
Q 019145 56 RPKQVKDVAHQEEVVRVLTNTLET--------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (345)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 121 (345)
...+|+|+-|-+.+++.+.+.+.- ....++||+||||||||.+|++++++. +.+|+.+..
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea------ga~fInv~~ 160 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA------GANFINVSV 160 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc------CCCcceeec
Confidence 345788998999999988887632 123459999999999999999999998 677777777
Q ss_pred CCccchH--HHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH-------HH----HHHHHHHHhhc----CC
Q 019145 122 SDDRGIN--VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-------DA----QNALRRTMETY----SK 184 (345)
Q Consensus 122 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~-------~~----~~~l~~~le~~----~~ 184 (345)
+...+.- .-...+......+. .=.+.+|+|||++.+-. +. -+.+....+.. ..
T Consensus 161 s~lt~KWfgE~eKlv~AvFslAs----------Kl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~ 230 (386)
T KOG0737|consen 161 SNLTSKWFGEAQKLVKAVFSLAS----------KLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSE 230 (386)
T ss_pred cccchhhHHHHHHHHHHHHhhhh----------hcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCc
Confidence 6543311 11111111111110 11345999999998731 11 12233233321 12
Q ss_pred ceEEEEecCcccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 019145 185 VTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263 (345)
Q Consensus 185 ~~~ii~~~n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~ 263 (345)
.+.+..+||.+..++.++.+|+. .++++-|+..+..++++-+.+.+.++ ++-.+..++..+.|.-..-+.+++..|.+
T Consensus 231 rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLkelC~~Aa~ 309 (386)
T KOG0737|consen 231 RVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLKELCRLAAL 309 (386)
T ss_pred eEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHHHHHHHHHHhH
Confidence 34444568999999999999976 89999999999999999999888775 34448888998888776666666666655
No 165
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.62 E-value=6.2e-14 Score=115.94 Aligned_cols=191 Identities=21% Similarity=0.268 Sum_probs=134.5
Q ss_pred hhhhCCCCCccccccHHHHHHHHH----HHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccch
Q 019145 52 VEKYRPKQVKDVAHQEEVVRVLTN----TLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI 127 (345)
Q Consensus 52 ~~~~~p~~~~~~~g~~~~~~~l~~----~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 127 (345)
...+.|..+++++|-+..++.|.+ .+......|+||+|+.|||||++++++.+++... +..++++...+....
T Consensus 18 i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~---GLRlIev~k~~L~~l 94 (249)
T PF05673_consen 18 IKHPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ---GLRLIEVSKEDLGDL 94 (249)
T ss_pred cCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc---CceEEEECHHHhccH
Confidence 456778899999997777655544 4455566679999999999999999999998443 467888877665555
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-HHHHHHHHHHHh----hcCCceEEEEecCcccccch--
Q 019145 128 NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-EDAQNALRRTME----TYSKVTRFFFICNYISRIIE-- 200 (345)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-~~~~~~l~~~le----~~~~~~~ii~~~n~~~~l~~-- 200 (345)
..+.+.+.. . ..+-||++||+..=. ......|..++| ..|.++.+.+|+|..+.+..
T Consensus 95 ~~l~~~l~~---~-------------~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~ 158 (249)
T PF05673_consen 95 PELLDLLRD---R-------------PYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESF 158 (249)
T ss_pred HHHHHHHhc---C-------------CCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhh
Confidence 444444332 1 133499999975332 233455555654 56788888888876544332
Q ss_pred ---------------------hhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-----HHHHHHHhcCCCHHHH
Q 019145 201 ---------------------PLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-----ALSTLSSISQGDLRRA 253 (345)
Q Consensus 201 ---------------------~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-----~~~~l~~~s~g~~r~~ 253 (345)
+|..||. .+.|.+++.++-.+++...+++.|+.++++ +++.-..+.+.+.|.|
T Consensus 159 ~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RSGRtA 238 (249)
T PF05673_consen 159 SDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGRSGRTA 238 (249)
T ss_pred hhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCCHHHH
Confidence 2344665 789999999999999999999999999853 3444445556688887
Q ss_pred HHHHHHHH
Q 019145 254 ITYLQGAA 261 (345)
Q Consensus 254 ~~~l~~~~ 261 (345)
..-++.++
T Consensus 239 ~QF~~~l~ 246 (249)
T PF05673_consen 239 RQFIDDLA 246 (249)
T ss_pred HHHHHHHh
Confidence 76665543
No 166
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.62 E-value=2.7e-14 Score=119.14 Aligned_cols=121 Identities=25% Similarity=0.321 Sum_probs=101.6
Q ss_pred eEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecC-------------cccccchhhhccceeEEecCCCHHHHHHH
Q 019145 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN-------------YISRIIEPLASRCAKFRFKPLSEEVMSSR 222 (345)
Q Consensus 156 ~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n-------------~~~~l~~~l~~r~~~i~~~~~~~~~~~~~ 222 (345)
++++||||+|+|.-+.+..|.+.+|.+- ...+||++| .++.+++.+++|.-++...+++.++++++
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES~i-aPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~I 375 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALESPI-APIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQI 375 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcCCC-CceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHHH
Confidence 4699999999999999999999999854 345677765 34568899999999999999999999999
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHH---HHhC-CCCCHHHHHHhh
Q 019145 223 VLHICNEEGLNLDAEALSTLSSIS-QGDLRRAITYLQGAA---RLFG-SSITSKDLISVS 277 (345)
Q Consensus 223 l~~~~~~~~~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~---~~~~-~~it~~~v~~~~ 277 (345)
++.+++.+++.++++++..+++.. ...+|.++..|.-+. ...| +.|..++|+++.
T Consensus 376 i~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~ 435 (456)
T KOG1942|consen 376 IKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVT 435 (456)
T ss_pred HHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHH
Confidence 999999999999999999999865 678999999986333 3334 468888888764
No 167
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.61 E-value=2.7e-14 Score=144.95 Aligned_cols=177 Identities=12% Similarity=0.139 Sum_probs=117.9
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccch----------------------------------
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI---------------------------------- 127 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~---------------------------------- 127 (345)
+..+||+||||||||.+|+++|.+. ..+++.+++++-...
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es------~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e 1703 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNS------YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLT 1703 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhc------CCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhh
Confidence 3459999999999999999999998 566666655332100
Q ss_pred -------------H--HHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHH-----HHHHHHHHHhhc-----
Q 019145 128 -------------N--VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED-----AQNALRRTMETY----- 182 (345)
Q Consensus 128 -------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~-----~~~~l~~~le~~----- 182 (345)
. .++..++.+.. ..+.||+|||+|.+... ..+.|+..++..
T Consensus 1704 ~~n~~~~~m~~~e~~~rIr~lFelARk--------------~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s 1769 (2281)
T CHL00206 1704 MMNALTMDMMPKIDRFYITLQFELAKA--------------MSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCS 1769 (2281)
T ss_pred hcchhhhhhhhhhhHHHHHHHHHHHHH--------------CCCeEEEEEchhhcCCCccceehHHHHHHHhccccccCC
Confidence 0 01111222111 23469999999999643 256677777632
Q ss_pred CCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH--HHHHHHHhcCC-CHHHHHHH
Q 019145 183 SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE--ALSTLSSISQG-DLRRAITY 256 (345)
Q Consensus 183 ~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~--~~~~l~~~s~g-~~r~~~~~ 256 (345)
...+.+|.+||.++.++|++++ |++ .+.+..|+..+..+++.......|+.++++ .++.+++.+.| ..+++.+.
T Consensus 1770 ~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanL 1849 (2281)
T CHL00206 1770 TRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVAL 1849 (2281)
T ss_pred CCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHH
Confidence 3457788889999999999998 776 788888888777777765555556666543 36888888755 33444444
Q ss_pred HHHHHHHh---C-CCCCHHHHHHhhC
Q 019145 257 LQGAARLF---G-SSITSKDLISVSG 278 (345)
Q Consensus 257 l~~~~~~~---~-~~it~~~v~~~~~ 278 (345)
+..++..+ + ..|+.+++..++.
T Consensus 1850 vNEAaliAirq~ks~Id~~~I~~Al~ 1875 (2281)
T CHL00206 1850 TNEALSISITQKKSIIDTNTIRSALH 1875 (2281)
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 44444333 3 4488888877654
No 168
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.61 E-value=2.5e-14 Score=141.91 Aligned_cols=203 Identities=17% Similarity=0.164 Sum_probs=146.7
Q ss_pred hhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC----CCCCCceeeeecCCc-
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP----ELYKSRVLELNASDD- 124 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~----~~~~~~~~~~~~~~~- 124 (345)
.++++-+...++.++|++..+..+..++.....+|++|+||||||||++++.++..+... ...+..++.++....
T Consensus 168 ~l~~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ 247 (821)
T CHL00095 168 NLTKEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLL 247 (821)
T ss_pred HHHHHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHh
Confidence 455566777899999999999999999999888999999999999999999999987422 223567777775321
Q ss_pred ---cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------HHHHHHHHHHhhcCCceEEEEecC
Q 019145 125 ---RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------DAQNALRRTMETYSKVTRFFFICN 193 (345)
Q Consensus 125 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------~~~~~l~~~le~~~~~~~ii~~~n 193 (345)
.......+.+......... ....||||||+|.+.. +..+.|...+.. +...+|.+|+
T Consensus 248 ag~~~~ge~e~rl~~i~~~~~~----------~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~IgaTt 315 (821)
T CHL00095 248 AGTKYRGEFEERLKRIFDEIQE----------NNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIGATT 315 (821)
T ss_pred ccCCCccHHHHHHHHHHHHHHh----------cCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEEeCC
Confidence 1112222333332222111 1235999999997742 345667777764 4566777776
Q ss_pred cc-----cccchhhhccceeEEecCCCHHHHHHHHHHHHH----HhCCCCCHHHHHHHHHhcCC------CHHHHHHHHH
Q 019145 194 YI-----SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN----EEGLNLDAEALSTLSSISQG------DLRRAITYLQ 258 (345)
Q Consensus 194 ~~-----~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~----~~~~~i~~~~~~~l~~~s~g------~~r~~~~~l~ 258 (345)
.. ....+.+.+||..+.+.+++.++...+++.... ..++.++++++..+++.+.+ -+++++..++
T Consensus 316 ~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld 395 (821)
T CHL00095 316 LDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLD 395 (821)
T ss_pred HHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHH
Confidence 43 246789999999999999999998888876543 35677999999999998865 3788999998
Q ss_pred HHHHHh
Q 019145 259 GAARLF 264 (345)
Q Consensus 259 ~~~~~~ 264 (345)
.++...
T Consensus 396 ~a~a~~ 401 (821)
T CHL00095 396 EAGSRV 401 (821)
T ss_pred HHHHHH
Confidence 877543
No 169
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.61 E-value=7.9e-14 Score=123.20 Aligned_cols=221 Identities=20% Similarity=0.158 Sum_probs=137.3
Q ss_pred CCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCC-CceeeeecCCc-----------
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYK-SRVLELNASDD----------- 124 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~-~~~~~~~~~~~----------- 124 (345)
...|.+++||++.+..|...+......+++|+|++|||||++++.+++.+....... .+|. .++...
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~~p~~~~~~~~~~~ 91 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPSDPELMSDEVREAI 91 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCCChhhhchhhhhhh
Confidence 348889999999999999998888888899999999999999999988874322111 1111 111000
Q ss_pred ---------------------cchHHHHHHHHHHHHhhhcCC-CCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc
Q 019145 125 ---------------------RGINVVRTKIKTFAAVAVGSG-QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (345)
Q Consensus 125 ---------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~ 182 (345)
.+.+.+...+.-......+.. ..++....+..++|++||++.++...+..|++.+++.
T Consensus 92 ~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLeam~e~ 171 (350)
T CHL00081 92 QNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDSAASG 171 (350)
T ss_pred cccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHHHHHHhC
Confidence 000000000000000000000 0122233456789999999999999999999999762
Q ss_pred C-------------CceEEEEecCccc-ccchhhhccce-eEEecCCC-HHHHHHHHHHHHH------------------
Q 019145 183 S-------------KVTRFFFICNYIS-RIIEPLASRCA-KFRFKPLS-EEVMSSRVLHICN------------------ 228 (345)
Q Consensus 183 ~-------------~~~~ii~~~n~~~-~l~~~l~~r~~-~i~~~~~~-~~~~~~~l~~~~~------------------ 228 (345)
. ..+.+|.+.|... .+.+.+..|+. .+.+..++ .++..+++++...
T Consensus 172 ~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~ 251 (350)
T CHL00081 172 WNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEE 251 (350)
T ss_pred CeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhcccccc
Confidence 1 2223333345433 58889999988 67777776 3555555544211
Q ss_pred -----------HhCCCCCHHHHHHHHHhc---C-CCHHHHHHHHHHHHHH---hC-CCCCHHHHHHhhC
Q 019145 229 -----------EEGLNLDAEALSTLSSIS---Q-GDLRRAITYLQGAARL---FG-SSITSKDLISVSG 278 (345)
Q Consensus 229 -----------~~~~~i~~~~~~~l~~~s---~-g~~r~~~~~l~~~~~~---~~-~~it~~~v~~~~~ 278 (345)
-..+.++++.++++++.+ + -.+|..+..+..+... .| ..|+.+||..+..
T Consensus 252 ~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~ 320 (350)
T CHL00081 252 LRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVIT 320 (350)
T ss_pred CHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 124668899988887765 2 2578877766544433 34 4599999988754
No 170
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.61 E-value=3.1e-14 Score=139.73 Aligned_cols=192 Identities=23% Similarity=0.296 Sum_probs=128.9
Q ss_pred ccccccHHHHHHHHHHHHcC--------CC-CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHH
Q 019145 61 KDVAHQEEVVRVLTNTLETA--------NC-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~--------~~-~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (345)
+.++||+++++.+.+.+... ++ .+++|+||+|||||++|+++++.+ ...++.++++.......+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l------~~~~~~~d~se~~~~~~~~ 527 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL------GVHLERFDMSEYMEKHTVS 527 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh------cCCeEEEeCchhhhcccHH
Confidence 46789999999988888642 12 247999999999999999999998 4566777765432222221
Q ss_pred HHHHHHHHhhhcC---CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCccc-
Q 019145 132 TKIKTFAAVAVGS---GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS- 196 (345)
Q Consensus 132 ~~~~~~~~~~~~~---~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~~- 196 (345)
..+...... .+. +.........+++||++||++.++++.++.|++++++.. .++.+|+|+|...
T Consensus 528 ~lig~~~gy-vg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~ 606 (731)
T TIGR02639 528 RLIGAPPGY-VGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGAS 606 (731)
T ss_pred HHhcCCCCC-cccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchh
Confidence 111110000 000 000000112356899999999999999999999998641 3566888886421
Q ss_pred ------------------------ccchhhhccce-eEEecCCCHHHHHHHHHHHHHH-------hC--CCCCHHHHHHH
Q 019145 197 ------------------------RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNE-------EG--LNLDAEALSTL 242 (345)
Q Consensus 197 ------------------------~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~-------~~--~~i~~~~~~~l 242 (345)
.+.|.+..|++ ++.|.|++.+++..++...++. .| +.+++++++.|
T Consensus 607 ~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~L 686 (731)
T TIGR02639 607 EMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYL 686 (731)
T ss_pred hhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHH
Confidence 14677888886 8999999999999999887652 22 56899999999
Q ss_pred HHhc---CCCHHHHHHHHHH
Q 019145 243 SSIS---QGDLRRAITYLQG 259 (345)
Q Consensus 243 ~~~s---~g~~r~~~~~l~~ 259 (345)
++.+ ....|.+-+.++.
T Consensus 687 a~~~~~~~~GaR~l~r~i~~ 706 (731)
T TIGR02639 687 AEKGYDEEFGARPLARVIQE 706 (731)
T ss_pred HHhCCCcccCchHHHHHHHH
Confidence 9864 2234544444443
No 171
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.60 E-value=1.7e-13 Score=133.39 Aligned_cols=214 Identities=17% Similarity=0.142 Sum_probs=143.9
Q ss_pred CCCCccccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHH-H
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT-K 133 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 133 (345)
..+|++++|....+..+...+.. ....+++|+|++||||+++|+++++.. .....+|+.+||..... +.+.. .
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s---~r~~~pfv~vnc~~~~~-~~~~~el 396 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNES---ERAAGPYIAVNCQLYPD-EALAEEF 396 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhC---CccCCCeEEEECCCCCh-HHHHHHh
Confidence 34789999988777766665543 233459999999999999999998874 22356899999987432 22211 1
Q ss_pred HHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCcc-------
Q 019145 134 IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI------- 195 (345)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~------- 195 (345)
+... . ........+....+..+.|+|||++.++...|..|++++++.. ..+++|++++..
T Consensus 397 fg~~-~-~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~ 474 (638)
T PRK11388 397 LGSD-R-TDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQ 474 (638)
T ss_pred cCCC-C-cCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHhc
Confidence 1110 0 0000001112223566799999999999999999999998642 146788877643
Q ss_pred cccchhhhccce--eEEecCCCH--HHHHHHHHHHHHH----h--CCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHh
Q 019145 196 SRIIEPLASRCA--KFRFKPLSE--EVMSSRVLHICNE----E--GLNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF 264 (345)
Q Consensus 196 ~~l~~~l~~r~~--~i~~~~~~~--~~~~~~l~~~~~~----~--~~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~ 264 (345)
..+.+.+..|.. .+.++|+.+ +|+..++..++.+ . .+.+++++++.|..+. .||+|.+.|.++.++..+
T Consensus 475 ~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~~ 554 (638)
T PRK11388 475 NRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSS 554 (638)
T ss_pred CCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHhC
Confidence 234455556655 566777754 4666666555443 2 2468999999999987 999999999999988665
Q ss_pred -CCCCCHHHHHHh
Q 019145 265 -GSSITSKDLISV 276 (345)
Q Consensus 265 -~~~it~~~v~~~ 276 (345)
+..|+.+++...
T Consensus 555 ~~~~i~~~~lp~~ 567 (638)
T PRK11388 555 DNGRIRLSDLPEH 567 (638)
T ss_pred CCCeecHHHCchh
Confidence 446887776543
No 172
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.60 E-value=1e-14 Score=112.82 Aligned_cols=109 Identities=28% Similarity=0.341 Sum_probs=81.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEE
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKI 158 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (345)
++|+||||||||++++.+++.+ +.+++.+++.... ....+...+....... .+.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l------~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------------~~~v 61 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL------GFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSA-------------KPCV 61 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT------TSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTS-------------TSEE
T ss_pred CEEECcCCCCeeHHHHHHHhhc------ccccccccccccccccccccccccccccccccccc-------------ccee
Confidence 6899999999999999999998 6788888886543 1222333333322111 2469
Q ss_pred EEEcCCCCCCHHH-----------HHHHHHHHhhcCC---ceEEEEecCcccccchhhh-ccce-eEEec
Q 019145 159 IILDEADSMTEDA-----------QNALRRTMETYSK---VTRFFFICNYISRIIEPLA-SRCA-KFRFK 212 (345)
Q Consensus 159 liiDE~~~l~~~~-----------~~~l~~~le~~~~---~~~ii~~~n~~~~l~~~l~-~r~~-~i~~~ 212 (345)
|+|||+|.+.... .+.|+..++.... .+.+|++||..+.+++++. +||. .++|+
T Consensus 62 l~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 62 LFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp EEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-
T ss_pred eeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcC
Confidence 9999999997654 7788888887665 4788999999999999999 8988 55553
No 173
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.2e-14 Score=117.79 Aligned_cols=168 Identities=21% Similarity=0.302 Sum_probs=115.9
Q ss_pred CCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC--
Q 019145 59 QVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD-- 123 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~-- 123 (345)
.++++-|-++.++.+.+.+-- ..+..+|+|||||||||.+|+++|.+. +..|..+.++.
T Consensus 169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT------~aTFLKLAgPQLV 242 (424)
T KOG0652|consen 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT------NATFLKLAGPQLV 242 (424)
T ss_pred cccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc------cchHHHhcchHHH
Confidence 567888888888888777622 233459999999999999999999987 44444444332
Q ss_pred ----ccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHhhc-----C
Q 019145 124 ----DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETY-----S 183 (345)
Q Consensus 124 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le~~-----~ 183 (345)
..+...++..+.-... ..+.+|||||+|.+. .+++..++.++... .
T Consensus 243 QMfIGdGAkLVRDAFaLAKE--------------kaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~ 308 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFALAKE--------------KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSD 308 (424)
T ss_pred hhhhcchHHHHHHHHHHhhc--------------cCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCc
Confidence 1233333333332221 234699999999873 34566666666543 2
Q ss_pred CceEEEEecCcccccchhhhccce---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcC
Q 019145 184 KVTRFFFICNYISRIIEPLASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQ 247 (345)
Q Consensus 184 ~~~~ii~~~n~~~~l~~~l~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~ 247 (345)
..+.+|.++|..+-++|++.+.+. .++|+.|+.+-...+++-..++.++. ++-..+.+++.+.
T Consensus 309 ~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~-~DvNfeELaRsTd 374 (424)
T KOG0652|consen 309 DRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVS-DDVNFEELARSTD 374 (424)
T ss_pred cceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCC-CCCCHHHHhhccc
Confidence 467889999999999999988554 79999999888888887776665543 2333777877764
No 174
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.60 E-value=2e-13 Score=128.84 Aligned_cols=214 Identities=20% Similarity=0.219 Sum_probs=142.9
Q ss_pred CCCCCccccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHH
Q 019145 56 RPKQVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (345)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (345)
....|++++|....+..+...++. ....+++|+|++||||+++|+++.... .....+|+.++|.... .+.+...
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s---~r~~~pfv~inca~~~-~~~~e~e 274 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRS---PRGKKPFLALNCASIP-DDVVESE 274 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhC---CCCCCCeEEeccccCC-HHHHHHH
Confidence 456899999988877666665543 233459999999999999999987653 2235688999997643 2222211
Q ss_pred HHHHHHhhhcC--CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCccc----
Q 019145 134 IKTFAAVAVGS--GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS---- 196 (345)
Q Consensus 134 ~~~~~~~~~~~--~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~~---- 196 (345)
+-......... ....+....+..+.|+|||++.++...|..|++++++.. .++++|++++..-
T Consensus 275 lFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~ 354 (520)
T PRK10820 275 LFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELV 354 (520)
T ss_pred hcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHH
Confidence 11100000000 001111223456799999999999999999999998632 2457888775431
Q ss_pred ---ccchhhhccce--eEEecCCCH--HHHHHH----HHHHHHHhCC---CCCHHHHHHHHHh-cCCCHHHHHHHHHHHH
Q 019145 197 ---RIIEPLASRCA--KFRFKPLSE--EVMSSR----VLHICNEEGL---NLDAEALSTLSSI-SQGDLRRAITYLQGAA 261 (345)
Q Consensus 197 ---~l~~~l~~r~~--~i~~~~~~~--~~~~~~----l~~~~~~~~~---~i~~~~~~~l~~~-s~g~~r~~~~~l~~~~ 261 (345)
.+.+.+..|.. .+.++|+.+ +++..+ +...+.+.|. .+++++++.|..+ ..||+|.+.|.+..++
T Consensus 355 ~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~ 434 (520)
T PRK10820 355 QKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRAL 434 (520)
T ss_pred HcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 24466777765 577777754 455544 4444445543 5899999999988 6999999999999888
Q ss_pred HHh-CCCCCHHHH
Q 019145 262 RLF-GSSITSKDL 273 (345)
Q Consensus 262 ~~~-~~~it~~~v 273 (345)
..+ +..|+.+++
T Consensus 435 ~~~~~~~i~~~~~ 447 (520)
T PRK10820 435 TQLEGYELRPQDI 447 (520)
T ss_pred HhCCCCcccHHHc
Confidence 765 446888875
No 175
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=3.8e-15 Score=124.43 Aligned_cols=225 Identities=21% Similarity=0.222 Sum_probs=132.7
Q ss_pred CCccccccHHHHHHHHHHHH---------cCC---CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc
Q 019145 59 QVKDVAHQEEVVRVLTNTLE---------TAN---CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~---------~~~---~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (345)
.|+++.|.+.++++|++.+- .+. -..+||||||||||+.+|+++|.+. +..|+.++.++..+
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA------nSTFFSvSSSDLvS 204 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA------NSTFFSVSSSDLVS 204 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc------CCceEEeehHHHHH
Confidence 78899999999999988762 222 2238999999999999999999998 67788887776432
Q ss_pred h--HHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH-------HH-----HHHHHHHHh--hcCCceEEEE
Q 019145 127 I--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-------DA-----QNALRRTME--TYSKVTRFFF 190 (345)
Q Consensus 127 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~-------~~-----~~~l~~~le--~~~~~~~ii~ 190 (345)
. ..-..++.++...+. .....||||||+|.+-. +. .+.|.+.-. .....+.++-
T Consensus 205 KWmGESEkLVknLFemAR----------e~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLg 274 (439)
T KOG0739|consen 205 KWMGESEKLVKNLFEMAR----------ENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLG 274 (439)
T ss_pred HHhccHHHHHHHHHHHHH----------hcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEe
Confidence 1 111222333222221 12456999999998721 11 123333221 2223455566
Q ss_pred ecCcccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh--CCC
Q 019145 191 ICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF--GSS 267 (345)
Q Consensus 191 ~~n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~--~~~ 267 (345)
+||-+..++.++++|++ .|.++.|...-....++-..-.--..+++..+..|++.+.|.-..-+..+-+=+... .+.
T Consensus 275 ATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkv 354 (439)
T KOG0739|consen 275 ATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKV 354 (439)
T ss_pred cCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHh
Confidence 78999999999999998 677766665555544433332222347888899999887654322222211111110 011
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHH
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDL 299 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~ 299 (345)
-+.-+..++.+.+....+..++.-|..++..+
T Consensus 355 qsAthFk~v~~~s~~~~~~~lltpcspgd~ga 386 (439)
T KOG0739|consen 355 QSATHFKKVSGPSNPSEVDDLLTPCSPGDPGA 386 (439)
T ss_pred hhhhhhhccCCCCChhhhccccCCCCCCCcch
Confidence 12223344444444444555555566665544
No 176
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.59 E-value=1e-13 Score=138.08 Aligned_cols=194 Identities=24% Similarity=0.308 Sum_probs=135.7
Q ss_pred ccccccHHHHHHHHHHHHcCC---------CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHH
Q 019145 61 KDVAHQEEVVRVLTNTLETAN---------CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~---------~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (345)
..++||+.++..+...+.... ...++|+||+|||||++|+++++.+++. ...++.++++.......+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~---~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD---EDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC---CCcEEEEechhhcccchHH
Confidence 468899999999988886521 1237999999999999999999998543 3467777776533322221
Q ss_pred HHHHHHHHhhhcCC------CCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCc
Q 019145 132 TKIKTFAAVAVGSG------QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNY 194 (345)
Q Consensus 132 ~~~~~~~~~~~~~~------~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~ 194 (345)
..+ ..+++.. .........++.+|++||++.++++.++.|++++++.. .++.+|+|||.
T Consensus 642 ~l~----g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 642 RLI----GAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred Hhc----CCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 111 0000000 00000112356799999999999999999999998752 45678999875
Q ss_pred cc-------------------------ccchhhhccce-eEEecCCCHHHHHHHHHHHHH-------HhC--CCCCHHHH
Q 019145 195 IS-------------------------RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICN-------EEG--LNLDAEAL 239 (345)
Q Consensus 195 ~~-------------------------~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~-------~~~--~~i~~~~~ 239 (345)
.. .+.+.+..|++ ++.|.|++.+++..++..... ..+ +.++++++
T Consensus 718 g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~ 797 (852)
T TIGR03346 718 GSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAAL 797 (852)
T ss_pred chHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHH
Confidence 21 13456777885 899999999999888877554 222 56899999
Q ss_pred HHHHHhc---CCCHHHHHHHHHHHH
Q 019145 240 STLSSIS---QGDLRRAITYLQGAA 261 (345)
Q Consensus 240 ~~l~~~s---~g~~r~~~~~l~~~~ 261 (345)
+.|++.. .++.|.+.+.++...
T Consensus 798 ~~L~~~~~~~~~gaR~L~~~i~~~i 822 (852)
T TIGR03346 798 DFLAEAGYDPVYGARPLKRAIQREI 822 (852)
T ss_pred HHHHHhCCCCCCCchhHHHHHHHHH
Confidence 9999874 578888888887665
No 177
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.58 E-value=6.5e-14 Score=124.62 Aligned_cols=207 Identities=18% Similarity=0.198 Sum_probs=141.3
Q ss_pred CCCCCccccccHHHHHHHHHHHHcCCC--CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHH
Q 019145 56 RPKQVKDVAHQEEVVRVLTNTLETANC--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (345)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~~~~--~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (345)
....+.+++|.....+.+.+.++.-.+ .+++++|++||||+.+|+.++..- ......+|+.+||......-...+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s--~r~~~~PFI~~NCa~~~en~~~~eL 150 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALS--ARRAEAPFIAFNCAAYSENLQEAEL 150 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhh--hcccCCCEEEEEHHHhCcCHHHHHH
Confidence 344677999998888888888877332 349999999999999999999432 2215789999999874433222222
Q ss_pred HHHHHHhhhc-CCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhh-----------cCCceEEEEecCc--ccccc
Q 019145 134 IKTFAAVAVG-SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMET-----------YSKVTRFFFICNY--ISRII 199 (345)
Q Consensus 134 ~~~~~~~~~~-~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~-----------~~~~~~ii~~~n~--~~~l~ 199 (345)
+.-......+ ...+.+....++.+.+++||++.++...|..|++++++ .+.++++|++|+. ...+.
T Consensus 151 FG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~ 230 (403)
T COG1221 151 FGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVL 230 (403)
T ss_pred hccccceeecccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHH
Confidence 2111111111 11233334456778999999999999999999999996 3356778887743 34455
Q ss_pred h--hhhccce--eEEecCCCH--HHHHH----HHHHHHHHhCCC---CCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHh
Q 019145 200 E--PLASRCA--KFRFKPLSE--EVMSS----RVLHICNEEGLN---LDAEALSTLSSIS-QGDLRRAITYLQGAARLF 264 (345)
Q Consensus 200 ~--~l~~r~~--~i~~~~~~~--~~~~~----~l~~~~~~~~~~---i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~ 264 (345)
. .+.+|+. .++++|+.. +|+.. ++...+.+.+.+ .+++++..+..+. .||+|.+.|.++.++..+
T Consensus 231 ~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 231 AGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQA 309 (403)
T ss_pred hhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHh
Confidence 5 6666555 677777654 44444 444455555554 3457788887764 999999999999998776
No 178
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.58 E-value=5.3e-13 Score=125.99 Aligned_cols=203 Identities=20% Similarity=0.207 Sum_probs=138.2
Q ss_pred CCccccccHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHH
Q 019145 59 QVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~--~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (345)
.+.+++|+...++.+.+.+..- ...+++|+|++||||+++|+++++.. ...+.+++.++|..... ..+...+-.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s---~r~~~p~v~v~c~~~~~-~~~e~~lfG 260 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS---PRADKPLVYLNCAALPE-SLAESELFG 260 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC---CcCCCCeEEEEcccCCh-HHHHHHhcC
Confidence 5678999988888777777653 33459999999999999999999874 22356899999986432 222211100
Q ss_pred HHHhhh-cC-CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCcc-------c
Q 019145 137 FAAVAV-GS-GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------S 196 (345)
Q Consensus 137 ~~~~~~-~~-~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~-------~ 196 (345)
...... +. ....+....+..+.|||||++.++...|..|++++++.. .++++|++++.. .
T Consensus 261 ~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~ 340 (509)
T PRK05022 261 HVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAG 340 (509)
T ss_pred ccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHHcC
Confidence 000000 00 011122234566799999999999999999999997632 256888888653 2
Q ss_pred ccchhhhccce--eEEecCCCH--HHHHHHHHHHH----HHhC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHh
Q 019145 197 RIIEPLASRCA--KFRFKPLSE--EVMSSRVLHIC----NEEG---LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF 264 (345)
Q Consensus 197 ~l~~~l~~r~~--~i~~~~~~~--~~~~~~l~~~~----~~~~---~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~ 264 (345)
.+...+..|+. .+.++|+.. +++..++..++ .+.| ..+++++++.|..+. .||+|.+.|.++.++..+
T Consensus 341 ~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~ 420 (509)
T PRK05022 341 RFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLA 420 (509)
T ss_pred CccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhc
Confidence 35566666765 466777653 55655544443 3333 569999999999876 899999999999988766
Q ss_pred C
Q 019145 265 G 265 (345)
Q Consensus 265 ~ 265 (345)
.
T Consensus 421 ~ 421 (509)
T PRK05022 421 R 421 (509)
T ss_pred C
Confidence 3
No 179
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.58 E-value=8.7e-14 Score=138.14 Aligned_cols=179 Identities=22% Similarity=0.307 Sum_probs=124.1
Q ss_pred ccccccHHHHHHHHHHHHcC-------CC--CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHH
Q 019145 61 KDVAHQEEVVRVLTNTLETA-------NC--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~-------~~--~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (345)
+.++||++++..+...+... .. ..++|+||+|||||++|+++++.+++. ...++.++.+.......+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~---~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS---EDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC---ccceEEEEchhccccccHH
Confidence 46789999999998888632 11 237999999999999999999999764 2456667665432222221
Q ss_pred HHHHHHHHhhhcCC-C-----CCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCc
Q 019145 132 TKIKTFAAVAVGSG-Q-----RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNY 194 (345)
Q Consensus 132 ~~~~~~~~~~~~~~-~-----~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~ 194 (345)
..+. .+++.. . ........+++||++||++.++++.++.|++++++.. .++.+|+|+|.
T Consensus 586 ~l~g----~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 586 KLIG----SPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred HhcC----CCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCc
Confidence 1110 000000 0 0000112456899999999999999999999999742 56788888763
Q ss_pred ccc-------------------------------------cchhhhccc-eeEEecCCCHHHHHHHHHHHHHH-------
Q 019145 195 ISR-------------------------------------IIEPLASRC-AKFRFKPLSEEVMSSRVLHICNE------- 229 (345)
Q Consensus 195 ~~~-------------------------------------l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~------- 229 (345)
... +.|.+.+|+ .++.|.|++.+++.+++...+..
T Consensus 662 g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~ 741 (821)
T CHL00095 662 GSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNE 741 (821)
T ss_pred chHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 210 235678888 58999999999999998876653
Q ss_pred hC--CCCCHHHHHHHHHhc
Q 019145 230 EG--LNLDAEALSTLSSIS 246 (345)
Q Consensus 230 ~~--~~i~~~~~~~l~~~s 246 (345)
.| +.+++++.+.|++.+
T Consensus 742 ~~i~l~~~~~~~~~La~~~ 760 (821)
T CHL00095 742 QGIQLEVTERIKTLLIEEG 760 (821)
T ss_pred CCcEEEECHHHHHHHHHhc
Confidence 23 458999999999864
No 180
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.58 E-value=1.8e-13 Score=135.71 Aligned_cols=195 Identities=24% Similarity=0.306 Sum_probs=130.4
Q ss_pred CCccccccHHHHHHHHHHHHcC-------CC--CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHH
Q 019145 59 QVKDVAHQEEVVRVLTNTLETA-------NC--PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~-------~~--~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 129 (345)
-...++||+.++..+...+... .. ..++|+||+|||||++|+++++.+++. ...++.++++.......
T Consensus 566 l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~---~~~~i~id~se~~~~~~ 642 (857)
T PRK10865 566 LHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS---DDAMVRIDMSEFMEKHS 642 (857)
T ss_pred hCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC---CCcEEEEEhHHhhhhhh
Confidence 3457889999998888888642 11 247999999999999999999988543 23567777654322111
Q ss_pred HHHHHHHHHHhhhcCC-CC-----CCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEec
Q 019145 130 VRTKIKTFAAVAVGSG-QR-----RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFIC 192 (345)
Q Consensus 130 ~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~ 192 (345)
....+ ..+++.. .. .......++.+|++||++.+++..++.|++++++.. .++.+|+||
T Consensus 643 ~~~Li----G~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TS 718 (857)
T PRK10865 643 VSRLV----GAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTS 718 (857)
T ss_pred HHHHh----CCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeC
Confidence 11111 0000000 00 000112345799999999999999999999998642 345688888
Q ss_pred Cccc-------------------------ccchhhhccc-eeEEecCCCHHHHHHHHHHHHHH-------hC--CCCCHH
Q 019145 193 NYIS-------------------------RIIEPLASRC-AKFRFKPLSEEVMSSRVLHICNE-------EG--LNLDAE 237 (345)
Q Consensus 193 n~~~-------------------------~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~-------~~--~~i~~~ 237 (345)
|... .+.|++.+|+ .++.|.|++.+++..++...+.. .+ +.++++
T Consensus 719 N~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~ 798 (857)
T PRK10865 719 NLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDE 798 (857)
T ss_pred CcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHH
Confidence 7521 2456888899 58999999999999988876653 23 457999
Q ss_pred HHHHHHHhcC---CCHHHHHHHHHHH
Q 019145 238 ALSTLSSISQ---GDLRRAITYLQGA 260 (345)
Q Consensus 238 ~~~~l~~~s~---g~~r~~~~~l~~~ 260 (345)
+++.|++.+. ...|.+-+.++..
T Consensus 799 al~~L~~~gy~~~~GARpL~r~I~~~ 824 (857)
T PRK10865 799 ALKLLSENGYDPVYGARPLKRAIQQQ 824 (857)
T ss_pred HHHHHHHcCCCccCChHHHHHHHHHH
Confidence 9999998752 1355555555443
No 181
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.58 E-value=3.3e-13 Score=119.41 Aligned_cols=220 Identities=16% Similarity=0.139 Sum_probs=132.2
Q ss_pred CCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc-------CCCCC--CCce-ee----------
Q 019145 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-------GPELY--KSRV-LE---------- 118 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~-------~~~~~--~~~~-~~---------- 118 (345)
.|..++||++++..+.-.+-.....+++|.|++|+|||+++++++..+. ++... ..+. +.
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 81 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQ 81 (337)
T ss_pred CccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhcc
Confidence 5778999999998887777676677899999999999999999998762 11000 0000 00
Q ss_pred ------------eecCCccchHHHHHHHHHHHHhhhcC-CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC--
Q 019145 119 ------------LNASDDRGINVVRTKIKTFAAVAVGS-GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-- 183 (345)
Q Consensus 119 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-- 183 (345)
.+.+.....+.+...+.-......+. ...++....+..+++++||++.++...+..|++.+++..
T Consensus 82 ~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~ 161 (337)
T TIGR02030 82 EPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAASGWNV 161 (337)
T ss_pred cccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHHhCCeE
Confidence 00000000000000000000000000 011222233566899999999999999999999997642
Q ss_pred -----------CceEEEEecCccc-ccchhhhccce-eEEecCCCH-HHHHHHHHHHHH---------------------
Q 019145 184 -----------KVTRFFFICNYIS-RIIEPLASRCA-KFRFKPLSE-EVMSSRVLHICN--------------------- 228 (345)
Q Consensus 184 -----------~~~~ii~~~n~~~-~l~~~l~~r~~-~i~~~~~~~-~~~~~~l~~~~~--------------------- 228 (345)
..+.+|.+.|... .+.+++.+|+. .+.+..++. ++..+++.....
T Consensus 162 v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~ 241 (337)
T TIGR02030 162 VEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQA 241 (337)
T ss_pred EEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHH
Confidence 2233344445433 58889999998 566766654 555555555211
Q ss_pred --------HhCCCCCHHHHHHHHHhc---CC-CHHHHHHHHHHHHHHh---C-CCCCHHHHHHhhC
Q 019145 229 --------EEGLNLDAEALSTLSSIS---QG-DLRRAITYLQGAARLF---G-SSITSKDLISVSG 278 (345)
Q Consensus 229 --------~~~~~i~~~~~~~l~~~s---~g-~~r~~~~~l~~~~~~~---~-~~it~~~v~~~~~ 278 (345)
-..+.+++++++++++.+ +. .+|..+..+..+..++ | ..|+.+||..+..
T Consensus 242 ~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~ 307 (337)
T TIGR02030 242 KIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAV 307 (337)
T ss_pred HHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 134568888888887654 33 4688777765544433 4 4599999988654
No 182
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.58 E-value=1.2e-13 Score=125.17 Aligned_cols=217 Identities=18% Similarity=0.193 Sum_probs=151.4
Q ss_pred hhCCCCCccccccHHHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHH
Q 019145 54 KYRPKQVKDVAHQEEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (345)
Q Consensus 54 ~~~p~~~~~~~g~~~~~~~l~~~l~~~~--~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (345)
.....+|++++|....+..+.+..+... ...+|+.|++||||..+|+++++. +...+.+|+.+||.. .+...+.
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~---S~R~~~PFIaiNCaA-iPe~LlE 313 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNL---SPRANGPFIAINCAA-IPETLLE 313 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhc---CcccCCCeEEEeccc-CCHHHHH
Confidence 4566699999998777766666665533 334999999999999999999875 456688999999987 3444444
Q ss_pred HHHHHHHHhhhcCCC---CCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCccc-
Q 019145 132 TKIKTFAAVAVGSGQ---RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS- 196 (345)
Q Consensus 132 ~~~~~~~~~~~~~~~---~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~~- 196 (345)
+.+-.+...+..+.. +++....+..+-||+||+..++...|..|++++++.. -.+++|.+||..-
T Consensus 314 SELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~ 393 (560)
T COG3829 314 SELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLE 393 (560)
T ss_pred HHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHH
Confidence 443333222222222 3344445778899999999999999999999998532 4678899987542
Q ss_pred ------ccchhhhccceeE--EecCCC--HHHHHHHHHHHHH----HhC--CC-CCHHHHHHHHHhc-CCCHHHHHHHHH
Q 019145 197 ------RIIEPLASRCAKF--RFKPLS--EEVMSSRVLHICN----EEG--LN-LDAEALSTLSSIS-QGDLRRAITYLQ 258 (345)
Q Consensus 197 ------~l~~~l~~r~~~i--~~~~~~--~~~~~~~l~~~~~----~~~--~~-i~~~~~~~l~~~s-~g~~r~~~~~l~ 258 (345)
.+-..|-.|..++ .++|+- .+|+......+.. ..+ +. ++++++..+.++- .||+|.+-|.++
T Consensus 394 ~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVRELeNviE 473 (560)
T COG3829 394 KMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELENVIE 473 (560)
T ss_pred HHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhCCCCchHHHHHHHHH
Confidence 3455666777754 444442 2555544444443 333 22 8999999998874 899999999999
Q ss_pred HHHHHhC--CCCCHHHHH
Q 019145 259 GAARLFG--SSITSKDLI 274 (345)
Q Consensus 259 ~~~~~~~--~~it~~~v~ 274 (345)
.+..+.+ ..|+.+++-
T Consensus 474 R~v~~~~~~~~I~~~~lp 491 (560)
T COG3829 474 RAVNLVESDGLIDADDLP 491 (560)
T ss_pred HHHhccCCcceeehhhcc
Confidence 9986543 336666554
No 183
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=2e-14 Score=119.72 Aligned_cols=202 Identities=21% Similarity=0.265 Sum_probs=136.7
Q ss_pred hhhCCCCCccccccHHHHHHHHHHHHcC-------------CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeee
Q 019145 53 EKYRPKQVKDVAHQEEVVRVLTNTLETA-------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (345)
Q Consensus 53 ~~~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 119 (345)
++--..++.++-|-+..++.+++.+.-. .+..++|||+||||||.+|+++|++. +..|+.+
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT------SATFlRv 250 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT------SATFLRV 250 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc------chhhhhh
Confidence 3333447888989999999999888542 23459999999999999999999987 5566655
Q ss_pred ecCC------ccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHhhc
Q 019145 120 NASD------DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETY 182 (345)
Q Consensus 120 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le~~ 182 (345)
-+++ ..+...+++.+.-....+ ..|+||||+|.+. .+.+..++.+++..
T Consensus 251 vGseLiQkylGdGpklvRqlF~vA~e~a--------------pSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQl 316 (440)
T KOG0726|consen 251 VGSELIQKYLGDGPKLVRELFRVAEEHA--------------PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQL 316 (440)
T ss_pred hhHHHHHHHhccchHHHHHHHHHHHhcC--------------CceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhc
Confidence 5432 123444555555443333 3599999999873 24566666776643
Q ss_pred -----CCceEEEEecCcccccchhhhccce---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHH----HhcCCC
Q 019145 183 -----SKVTRFFFICNYISRIIEPLASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLS----SISQGD 249 (345)
Q Consensus 183 -----~~~~~ii~~~n~~~~l~~~l~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~----~~s~g~ 249 (345)
...+.+|++||....++|++.+-.. .+.|+.|+....+.+++-... +..+.+++ ++.++ +.||.|
T Consensus 317 dGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs--~Mtl~~dVnle~li~~kddlSGAd 394 (440)
T KOG0726|consen 317 DGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTS--RMTLAEDVNLEELIMTKDDLSGAD 394 (440)
T ss_pred cCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeec--ccchhccccHHHHhhccccccccc
Confidence 3578999999999999999998544 799999988777776643322 23343333 44444 456778
Q ss_pred HHHHHHHHHHHHHHh-CCCCCHHHHHHh
Q 019145 250 LRRAITYLQGAARLF-GSSITSKDLISV 276 (345)
Q Consensus 250 ~r~~~~~l~~~~~~~-~~~it~~~v~~~ 276 (345)
+.......-.++... ...++.+|...+
T Consensus 395 IkAictEaGllAlRerRm~vt~~DF~ka 422 (440)
T KOG0726|consen 395 IKAICTEAGLLALRERRMKVTMEDFKKA 422 (440)
T ss_pred HHHHHHHHhHHHHHHHHhhccHHHHHHH
Confidence 777666655555443 234777766554
No 184
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.57 E-value=1.4e-13 Score=135.61 Aligned_cols=180 Identities=19% Similarity=0.230 Sum_probs=126.1
Q ss_pred CCCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 56 RPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
...+|+++.|.+..++.+.+.+.. ..+.+++|+||||||||++++++++++ +..++.+++.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~------~~~~i~i~~~ 246 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA------GAYFISINGP 246 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh------CCeEEEEecH
Confidence 345889999999999888887742 123459999999999999999999998 5667777764
Q ss_pred Ccc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHhhcC--
Q 019145 123 DDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETYS-- 183 (345)
Q Consensus 123 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le~~~-- 183 (345)
... ....++..+..... ....+|+|||+|.+. ...++.|+..++...
T Consensus 247 ~i~~~~~g~~~~~l~~lf~~a~~--------------~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~ 312 (733)
T TIGR01243 247 EIMSKYYGESEERLREIFKEAEE--------------NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGR 312 (733)
T ss_pred HHhcccccHHHHHHHHHHHHHHh--------------cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccC
Confidence 321 11223333333221 123599999998874 235667888887543
Q ss_pred CceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHhcCCCHHHHHHHH
Q 019145 184 KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLD-AEALSTLSSISQGDLRRAITYL 257 (345)
Q Consensus 184 ~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~-~~~~~~l~~~s~g~~r~~~~~l 257 (345)
..+.+|.++|.+..+++++++ |+. .+.|+.|+.++..++++.... +..+. +..+..+++.+.|....-+..+
T Consensus 313 ~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~--~~~l~~d~~l~~la~~t~G~~gadl~~l 388 (733)
T TIGR01243 313 GRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTR--NMPLAEDVDLDKLAEVTHGFVGADLAAL 388 (733)
T ss_pred CCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhc--CCCCccccCHHHHHHhCCCCCHHHHHHH
Confidence 345566688999999999887 565 789999999999999986554 34443 3447888888877655444443
No 185
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.56 E-value=7.2e-14 Score=126.93 Aligned_cols=173 Identities=21% Similarity=0.234 Sum_probs=111.1
Q ss_pred cccccHHHHHHHHHHHHc-------C---------CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc
Q 019145 62 DVAHQEEVVRVLTNTLET-------A---------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~-------~---------~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (345)
.++||+++++.+...+.. + ...+++|+||||||||++|+++++.+ +.+++.+++....
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l------~~pf~~id~~~l~ 145 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL------DVPFAIADATTLT 145 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh------CCCceecchhhcc
Confidence 478999999888665521 1 23569999999999999999999988 5667766664321
Q ss_pred ch----HHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------------HHHHHHHHHHhhcC----
Q 019145 126 GI----NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYS---- 183 (345)
Q Consensus 126 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------------~~~~~l~~~le~~~---- 183 (345)
.. ......+......... ......+.+|+|||+|.++. ..|+.|+++++...
T Consensus 146 ~~gyvG~d~e~~l~~l~~~~~~------~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~ 219 (412)
T PRK05342 146 EAGYVGEDVENILLKLLQAADY------DVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVP 219 (412)
T ss_pred cCCcccchHHHHHHHHHHhccc------cHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeC
Confidence 10 1122222222111100 01123557999999999975 37899999998421
Q ss_pred ---------CceEEEEecCc------------------------------c--------c--------------ccchhh
Q 019145 184 ---------KVTRFFFICNY------------------------------I--------S--------------RIIEPL 202 (345)
Q Consensus 184 ---------~~~~ii~~~n~------------------------------~--------~--------------~l~~~l 202 (345)
....+|.|+|. . . .+.|++
T Consensus 220 ~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEf 299 (412)
T PRK05342 220 PQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEF 299 (412)
T ss_pred CCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHH
Confidence 01223333221 0 0 035667
Q ss_pred hccce-eEEecCCCHHHHHHHHHH-----------HHHHhCC--CCCHHHHHHHHHhc
Q 019145 203 ASRCA-KFRFKPLSEEVMSSRVLH-----------ICNEEGL--NLDAEALSTLSSIS 246 (345)
Q Consensus 203 ~~r~~-~i~~~~~~~~~~~~~l~~-----------~~~~~~~--~i~~~~~~~l~~~s 246 (345)
..|++ ++.|.+++.+++..++.. .+...++ .+++++++.|++.+
T Consensus 300 lgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~ 357 (412)
T PRK05342 300 IGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKA 357 (412)
T ss_pred hCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhC
Confidence 77776 789999999999998872 2233454 48999999999874
No 186
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=99.56 E-value=2.2e-14 Score=139.41 Aligned_cols=207 Identities=28% Similarity=0.423 Sum_probs=158.7
Q ss_pred cchhhhhhCCCCCccccccHHHHHHHHHHHHcC--------------CCC--cEEEeCCCCCCHHHHHHHHHHHhcCCCC
Q 019145 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA--------------NCP--HMLFYGPPGTGKTTTALAIAHQLFGPEL 111 (345)
Q Consensus 48 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~--------------~~~--~lll~G~~G~GKT~la~~la~~l~~~~~ 111 (345)
...|.++|+|....++.|.......+.+|+... ... .++++||||+|||+.++..++++
T Consensus 307 ~~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~----- 381 (871)
T KOG1968|consen 307 GAGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKEL----- 381 (871)
T ss_pred ccccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhc-----
Confidence 467999999999999999877777777777543 001 25999999999999999999998
Q ss_pred CCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCC----CCCCCCCCeEEEEEcCCCCCCH---HHHHHHHHHHhhcCC
Q 019145 112 YKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR----RGGYPCPPYKIIILDEADSMTE---DAQNALRRTMETYSK 184 (345)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~iliiDE~~~l~~---~~~~~l~~~le~~~~ 184 (345)
++.+++.|+++.++...+.+.+..+.....-.... ..........||++||+|.+.. ..+..+-.++.. .
T Consensus 382 -g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l~~k--s 458 (871)
T KOG1968|consen 382 -GFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSLCKK--S 458 (871)
T ss_pred -ccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccchhhhhHHHHHHHHHh--c
Confidence 88999999999887776666555433221110000 0001123345999999999876 445566666663 3
Q ss_pred ceEEEEecCcccccc-hhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019145 185 VTRFFFICNYISRII-EPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (345)
Q Consensus 185 ~~~ii~~~n~~~~l~-~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~ 262 (345)
...+|++||...... +.+.+-|-.++|..|+.+.+...+..+|..+++.++++.++.+++.++||+|..++.++.+..
T Consensus 459 ~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~DiR~~i~~lq~~~~ 537 (871)
T KOG1968|consen 459 SRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSGGDIRQIIMQLQFWSL 537 (871)
T ss_pred cCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhcccCHHHHHHHHhhhhc
Confidence 456888888776544 455566788999999999999999999999999999999999999999999999999998853
No 187
>PRK09183 transposase/IS protein; Provisional
Probab=99.55 E-value=1.9e-15 Score=129.75 Aligned_cols=181 Identities=11% Similarity=0.144 Sum_probs=117.8
Q ss_pred CcccccccccCCCCCCCCccccCCc--cccCCCCchHHHhhhccccccCcchhhhhhCCCCCcccccc-HHHHHHHHHHH
Q 019145 1 MRANFGKIHKSGKNKSPNFTQKFST--TQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVAHQ-EEVVRVLTNTL 77 (345)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~-~~~~~~l~~~l 77 (345)
|+++|+++...+....+++.+++.. +.|...+.++..+++++ .+.+|+...+....|+...+. ...+..+..+-
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~e~l~~ll~~E~~~R~~~~~~~~~k---~a~~p~~~~l~~fd~~~~~~~~~~~i~~L~~~~ 97 (259)
T PRK09183 21 LISAAPALAQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTR---MAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLS 97 (259)
T ss_pred HHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCCCCCcHhhcccccCCCCCHHHHHHHhcCC
Confidence 4566777888888899999999887 67888888888888888 788888877777788766653 55666665442
Q ss_pred HcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeE
Q 019145 78 ETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157 (345)
Q Consensus 78 ~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (345)
......+++|+|||||||||++.+++..+.. . +..+..++..+ +...+....... ....... ......+
T Consensus 98 ~i~~~~~v~l~Gp~GtGKThLa~al~~~a~~-~--G~~v~~~~~~~------l~~~l~~a~~~~-~~~~~~~-~~~~~~d 166 (259)
T PRK09183 98 FIERNENIVLLGPSGVGKTHLAIALGYEAVR-A--GIKVRFTTAAD------LLLQLSTAQRQG-RYKTTLQ-RGVMAPR 166 (259)
T ss_pred chhcCCeEEEEeCCCCCHHHHHHHHHHHHHH-c--CCeEEEEeHHH------HHHHHHHHHHCC-cHHHHHH-HHhcCCC
Confidence 2334457999999999999999999888632 1 23333333221 110110000000 0000000 0012346
Q ss_pred EEEEcCCCCC--CHHHHHHHHHHHhhcCCceEEEEecCcc
Q 019145 158 IIILDEADSM--TEDAQNALRRTMETYSKVTRFFFICNYI 195 (345)
Q Consensus 158 iliiDE~~~l--~~~~~~~l~~~le~~~~~~~ii~~~n~~ 195 (345)
+++|||++.. +....+.|+++++.......+|+++|.+
T Consensus 167 lLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s~iiTsn~~ 206 (259)
T PRK09183 167 LLIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLP 206 (259)
T ss_pred EEEEcccccCCCChHHHHHHHHHHHHHHhcCcEEEecCCC
Confidence 9999999875 4566678999998766556688888754
No 188
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.7e-13 Score=122.37 Aligned_cols=176 Identities=22% Similarity=0.222 Sum_probs=128.6
Q ss_pred hhhCCCCCccccccHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeee
Q 019145 53 EKYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (345)
Q Consensus 53 ~~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 120 (345)
+.-++..|+++.|.+.+.+.+.+.+-- .....+||+||||+|||.+++++|.+. ...|+.++
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~------~atff~iS 218 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES------GATFFNIS 218 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh------cceEeecc
Confidence 456678899999988877766655421 122348999999999999999999998 67777777
Q ss_pred cCCccc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH------------HHHHHHHHHHhh-
Q 019145 121 ASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE------------DAQNALRRTMET- 181 (345)
Q Consensus 121 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~------------~~~~~l~~~le~- 181 (345)
++...+ ...++.++.-... ..+.|+||||+|.+-. -..+.|+++.--
T Consensus 219 assLtsK~~Ge~eK~vralf~vAr~--------------~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~ 284 (428)
T KOG0740|consen 219 ASSLTSKYVGESEKLVRALFKVARS--------------LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKN 284 (428)
T ss_pred HHHhhhhccChHHHHHHHHHHHHHh--------------cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhcccc
Confidence 754322 2233333333222 2456999999998721 123455555432
Q ss_pred --cCCceEEEEecCcccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC
Q 019145 182 --YSKVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG 248 (345)
Q Consensus 182 --~~~~~~ii~~~n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g 248 (345)
....+.+|-+||.+..+++++++|+. ++.++.|+.+....++.+.+...+..+.+..+..|++.+.|
T Consensus 285 s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Teg 354 (428)
T KOG0740|consen 285 SAPDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEG 354 (428)
T ss_pred CCCCCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcC
Confidence 22456677788999999999999998 77799999999999999999988888899999999987754
No 189
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.54 E-value=1.1e-12 Score=128.44 Aligned_cols=217 Identities=21% Similarity=0.264 Sum_probs=140.1
Q ss_pred hhhhhhCC--CCCccccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc
Q 019145 50 PWVEKYRP--KQVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (345)
Q Consensus 50 ~~~~~~~p--~~~~~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (345)
.+.+...+ ..|++++|+...+..+.+.+.. ....+++|+|++|||||++|+++++.. ...+.+++.++|....
T Consensus 363 ~lt~~L~~~n~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s---~r~~~~~v~i~c~~~~ 439 (686)
T PRK15429 363 ALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS---GRNNRRMVKMNCAAMP 439 (686)
T ss_pred HHHHhhhhccccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc---CCCCCCeEEEecccCC
Confidence 34444443 4678999998888777666553 333469999999999999999998865 2235688889987632
Q ss_pred chHHHHHHH-HHHHHhhhcC-CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEec
Q 019145 126 GINVVRTKI-KTFAAVAVGS-GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFIC 192 (345)
Q Consensus 126 ~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~ 192 (345)
. ..+...+ ........+. ....+....+..+.|+|||++.++.+.+..|+.++++.. .++++|+++
T Consensus 440 ~-~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t 518 (686)
T PRK15429 440 A-GLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAAT 518 (686)
T ss_pred h-hHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeC
Confidence 2 2111111 1000000000 000111122345799999999999999999999997632 356788888
Q ss_pred Cccc-------ccchhhhccce--eEEecCCCH--HHHHHHHHHHH----HHhCC---CCCHHHHHHHHHhc-CCCHHHH
Q 019145 193 NYIS-------RIIEPLASRCA--KFRFKPLSE--EVMSSRVLHIC----NEEGL---NLDAEALSTLSSIS-QGDLRRA 253 (345)
Q Consensus 193 n~~~-------~l~~~l~~r~~--~i~~~~~~~--~~~~~~l~~~~----~~~~~---~i~~~~~~~l~~~s-~g~~r~~ 253 (345)
+..- .+...+..|.. .+.++|+.+ +|+..++..++ .+.|. .+++++++.|..+. .||+|.+
T Consensus 519 ~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL 598 (686)
T PRK15429 519 NRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVREL 598 (686)
T ss_pred CCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHHH
Confidence 6432 23444556655 566777653 56655555443 33343 37999999998875 8999999
Q ss_pred HHHHHHHHHHhC-CCCCH
Q 019145 254 ITYLQGAARLFG-SSITS 270 (345)
Q Consensus 254 ~~~l~~~~~~~~-~~it~ 270 (345)
.+.++.++..+. ..|+.
T Consensus 599 ~~~i~~a~~~~~~~~i~~ 616 (686)
T PRK15429 599 ENVIERAVLLTRGNVLQL 616 (686)
T ss_pred HHHHHHHHHhCCCCcccc
Confidence 999999987653 34543
No 190
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1e-13 Score=114.22 Aligned_cols=178 Identities=20% Similarity=0.252 Sum_probs=123.8
Q ss_pred CCCccccccHHHHHHHHHHHHcC-------------CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc
Q 019145 58 KQVKDVAHQEEVVRVLTNTLETA-------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (345)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (345)
.++.++-|-++.+..+++.+... .+..+++|||||||||.+|+++|+.. +..|+.+-++..
T Consensus 174 vty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt------dacfirvigsel 247 (435)
T KOG0729|consen 174 VTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT------DACFIRVIGSEL 247 (435)
T ss_pred cccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc------CceEEeehhHHH
Confidence 36678888888898888877542 33459999999999999999999987 777887766542
Q ss_pred ------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHhh-----c
Q 019145 125 ------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMET-----Y 182 (345)
Q Consensus 125 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le~-----~ 182 (345)
.+...+++.++... ..+..+||+||+|.+. .+++..++.++.. +
T Consensus 248 vqkyvgegarmvrelf~mar--------------tkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdp 313 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMAR--------------TKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDP 313 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhc--------------ccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCC
Confidence 12222333333221 1245699999999873 3567777777763 4
Q ss_pred CCceEEEEecCcccccchhhhccce---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhcC----CCHHHHH
Q 019145 183 SKVTRFFFICNYISRIIEPLASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQ----GDLRRAI 254 (345)
Q Consensus 183 ~~~~~ii~~~n~~~~l~~~l~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~s~----g~~r~~~ 254 (345)
.++..+++++|.++.+++++.+-.. .++|..|+.+-...+++-.++.. .++.+. .+.|+..|. .++|...
T Consensus 314 rgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksm--sverdir~ellarlcpnstgaeirsvc 391 (435)
T KOG0729|consen 314 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSM--SVERDIRFELLARLCPNSTGAEIRSVC 391 (435)
T ss_pred CCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEecccc--ccccchhHHHHHhhCCCCcchHHHHHH
Confidence 4688899999999999999998443 79999999888888876555433 333444 566666664 3455544
Q ss_pred HHH
Q 019145 255 TYL 257 (345)
Q Consensus 255 ~~l 257 (345)
...
T Consensus 392 tea 394 (435)
T KOG0729|consen 392 TEA 394 (435)
T ss_pred HHh
Confidence 433
No 191
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.53 E-value=2.1e-12 Score=108.31 Aligned_cols=122 Identities=22% Similarity=0.296 Sum_probs=101.6
Q ss_pred eEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecC------------cccccchhhhccceeEEecCCCHHHHHHHH
Q 019145 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN------------YISRIIEPLASRCAKFRFKPLSEEVMSSRV 223 (345)
Q Consensus 156 ~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n------------~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l 223 (345)
++++||||+|+|.-+.+.+|.+.+|+--.. .+++++| ++..++-.++.|.-++...|++.++++++|
T Consensus 289 pGVLFIDEvHMLDIEcFsFlNrAlE~d~~P-iiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~IL 367 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDIECFSFLNRALENDMAP-IIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKKIL 367 (454)
T ss_pred cceEEEeeehhhhhHHHHHHHHHhhhccCc-EEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHHHHH
Confidence 469999999999999999999999874333 3455553 445688899999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHh----CCCCCHHHHHHhhC
Q 019145 224 LHICNEEGLNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF----GSSITSKDLISVSG 278 (345)
Q Consensus 224 ~~~~~~~~~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~----~~~it~~~v~~~~~ 278 (345)
.-+|..+++.+++++++.+.... ...+|.+++.+..+...+ +..+..+||..+..
T Consensus 368 ~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y~ 427 (454)
T KOG2680|consen 368 RIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVYR 427 (454)
T ss_pred HhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHHH
Confidence 99999999999999999998875 578999999997766554 45578888877643
No 192
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.53 E-value=3.1e-12 Score=116.43 Aligned_cols=204 Identities=16% Similarity=0.175 Sum_probs=119.5
Q ss_pred cccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHH--HHHHHH
Q 019145 62 DVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK--IKTFAA 139 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 139 (345)
.++|++++++.+...+..+. +++|+||||||||++|+++++...... .|..+.+..... ..+... +.....
T Consensus 21 ~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~~~~~----~F~~~~~~fttp-~DLfG~l~i~~~~~ 93 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNAR----AFEYLMTRFSTP-EEVFGPLSIQALKD 93 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHhcccC----cceeeeeeecCc-HHhcCcHHHhhhhh
Confidence 57899999998888886665 799999999999999999999863211 222222221111 111010 011000
Q ss_pred hhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC---------CceEEE-EecCccc---ccchhhhccc
Q 019145 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS---------KVTRFF-FICNYIS---RIIEPLASRC 206 (345)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~---------~~~~ii-~~~n~~~---~l~~~l~~r~ 206 (345)
.... .....+ ......++++||++.+++..++.|+..+++.. -..+++ +++|... ...+++..|+
T Consensus 94 ~g~f-~r~~~G-~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~DRF 171 (498)
T PRK13531 94 EGRY-QRLTSG-YLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYDRM 171 (498)
T ss_pred cCch-hhhcCC-ccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHhhE
Confidence 0000 000001 11123499999999999999999999996533 123344 4445322 1334888898
Q ss_pred e-eEEecCCC-HHHHHHHHHHHHH-----------------------HhCCCCCHHHHHHHHHhc------C----CCHH
Q 019145 207 A-KFRFKPLS-EEVMSSRVLHICN-----------------------EEGLNLDAEALSTLSSIS------Q----GDLR 251 (345)
Q Consensus 207 ~-~i~~~~~~-~~~~~~~l~~~~~-----------------------~~~~~i~~~~~~~l~~~s------~----g~~r 251 (345)
. .+.+++++ .++..+++..... ...+.+++.+.++|.+.. . -++|
T Consensus 172 liri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR 251 (498)
T PRK13531 172 LIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDR 251 (498)
T ss_pred EEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcH
Confidence 6 57777776 3555666654211 123557788877776543 1 3567
Q ss_pred HHHHHHH---HHHHHhC-CCCCHHHHH
Q 019145 252 RAITYLQ---GAARLFG-SSITSKDLI 274 (345)
Q Consensus 252 ~~~~~l~---~~~~~~~-~~it~~~v~ 274 (345)
..+..+. ..|.+.| ..|+.+||.
T Consensus 252 ~~~~l~~~akA~A~l~GR~~V~p~Dv~ 278 (498)
T PRK13531 252 RWKKAIRLLQASAFFSGRDAIAPIDLI 278 (498)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHH
Confidence 7666554 3333334 448888887
No 193
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=2.4e-13 Score=126.42 Aligned_cols=199 Identities=22% Similarity=0.204 Sum_probs=136.5
Q ss_pred CCCCccccccHHHHHHHHHHH---HcC--------C-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc
Q 019145 57 PKQVKDVAHQEEVVRVLTNTL---ETA--------N-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l---~~~--------~-~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (345)
..+|.|+.|.++.+..+.+.+ +.. . +..++|+||||||||.+|++++.++ +.+|+.+++++.
T Consensus 146 ~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA------~VPFf~iSGS~F 219 (596)
T COG0465 146 KVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA------GVPFFSISGSDF 219 (596)
T ss_pred CcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc------CCCceeccchhh
Confidence 358899999988887776655 321 1 3359999999999999999999998 777777777652
Q ss_pred ------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------------HHHHHHHHHHhhcC-
Q 019145 125 ------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYS- 183 (345)
Q Consensus 125 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------------~~~~~l~~~le~~~- 183 (345)
.+...++..+......+ +.|++|||+|...+ ...+.|+--++...
T Consensus 220 VemfVGvGAsRVRdLF~qAkk~a--------------P~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~ 285 (596)
T COG0465 220 VEMFVGVGASRVRDLFEQAKKNA--------------PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG 285 (596)
T ss_pred hhhhcCCCcHHHHHHHHHhhccC--------------CCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC
Confidence 34556667766654433 25999999998843 35667777777655
Q ss_pred -CceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhcCC----CHHHHH
Q 019145 184 -KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQG----DLRRAI 254 (345)
Q Consensus 184 -~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~s~g----~~r~~~ 254 (345)
..+.++..||.++-++++|.+ |++ .+..+.|+.....++++-.++. ..+++++ +..+++.+.| |+-.++
T Consensus 286 ~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~--~~l~~~Vdl~~iAr~tpGfsGAdL~nl~ 363 (596)
T COG0465 286 NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKN--KPLAEDVDLKKIARGTPGFSGADLANLL 363 (596)
T ss_pred CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhc--CCCCCcCCHHHHhhhCCCcccchHhhhH
Confidence 345666678999999999987 555 7888889989999999866554 3333333 4557777654 444444
Q ss_pred HHHHHHHHHh-CCCCCHHHHHHhh
Q 019145 255 TYLQGAARLF-GSSITSKDLISVS 277 (345)
Q Consensus 255 ~~l~~~~~~~-~~~it~~~v~~~~ 277 (345)
|+-.-.+... ...|+..++.++.
T Consensus 364 NEAal~aar~n~~~i~~~~i~ea~ 387 (596)
T COG0465 364 NEAALLAARRNKKEITMRDIEEAI 387 (596)
T ss_pred HHHHHHHHHhcCeeEeccchHHHH
Confidence 4333332222 3447777776553
No 194
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=99.53 E-value=2.1e-12 Score=106.08 Aligned_cols=179 Identities=16% Similarity=0.175 Sum_probs=136.6
Q ss_pred HHHHHHHHHcCCCCc-EEEeCCCC-CCHHHHHHHHHHHhcCCC---CCCCceeeeecC-------CccchHHHHHHHHHH
Q 019145 70 VRVLTNTLETANCPH-MLFYGPPG-TGKTTTALAIAHQLFGPE---LYKSRVLELNAS-------DDRGINVVRTKIKTF 137 (345)
Q Consensus 70 ~~~l~~~l~~~~~~~-lll~G~~G-~GKT~la~~la~~l~~~~---~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 137 (345)
+..+.+.++.++..| .||.|..+ +||..++..+++.+.|.. +...++..+... ...+++.+++....+
T Consensus 2 ~~~L~~~iq~~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l 81 (263)
T PRK06581 2 IERLEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFL 81 (263)
T ss_pred hHHHHHHHHcCcchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHH
Confidence 356778888888887 59999997 999999999999887642 223345555432 235677787766665
Q ss_pred HHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccceeEEecCCCHH
Q 019145 138 AAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEE 217 (345)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~ 217 (345)
...+ ..++++|++|+++|.++....++|++.+|++|.++.+|++++.+..+.+.++|||..+.|..++..
T Consensus 82 ~~~p----------~~g~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSRCq~i~~~~p~~~ 151 (263)
T PRK06581 82 SKTS----------AISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCFKINVRSSILH 151 (263)
T ss_pred hhCc----------ccCCcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhceEEEeCCCCCHH
Confidence 4443 235788999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019145 218 VMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261 (345)
Q Consensus 218 ~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~ 261 (345)
...++....... ..+..-++.|.+...-|......-.+.+.
T Consensus 152 ~~~e~~~~~~~p---~~~~~~l~~i~~~~~~d~~~w~~~~~~~~ 192 (263)
T PRK06581 152 AYNELYSQFIQP---IADNKTLDFINRFTTKDRELWLDFIDNLL 192 (263)
T ss_pred HHHHHHHHhccc---ccccHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 888877655422 23455577777776666665555555444
No 195
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.52 E-value=9.1e-13 Score=117.94 Aligned_cols=210 Identities=22% Similarity=0.215 Sum_probs=145.8
Q ss_pred CCccccccHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHH
Q 019145 59 QVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~--~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (345)
.+.+++|+...+..+.+.+..- ...++||.|++||||..+|++|.+.- .....+|+.+||... +...+.+.+-.
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S---~R~~kPfV~~NCAAl-PesLlESELFG 296 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLS---PRRDKPFVKLNCAAL-PESLLESELFG 296 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhC---cccCCCceeeecccc-chHHHHHHHhc
Confidence 5568999999888887777653 23349999999999999999998753 445779999999863 33333322222
Q ss_pred HHHhhh--cCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCcc-------c
Q 019145 137 FAAVAV--GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------S 196 (345)
Q Consensus 137 ~~~~~~--~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~-------~ 196 (345)
....+. .....++..-.++.+-+|+||+..++...|..|++.+.+.. -.+++|.+||.. .
T Consensus 297 HeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~~~V~~G 376 (550)
T COG3604 297 HEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEEMVRDG 376 (550)
T ss_pred ccccccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHHHHHHcC
Confidence 111111 12234455556788899999999999999999999998532 257889999753 2
Q ss_pred ccchhhhccceeEEecCCCH----HHH----HHHHHHHHHHhCC---CCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHh
Q 019145 197 RIIEPLASRCAKFRFKPLSE----EVM----SSRVLHICNEEGL---NLDAEALSTLSSIS-QGDLRRAITYLQGAARLF 264 (345)
Q Consensus 197 ~l~~~l~~r~~~i~~~~~~~----~~~----~~~l~~~~~~~~~---~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~ 264 (345)
++-..+..|..++.+.-|+- +++ ..++++..+..|. .+++++++.+.++. .||+|.+.|.++.++..+
T Consensus 377 ~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 377 EFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred cchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCCcHHHHHHHHHHHHHHh
Confidence 34455666777655444432 333 3344444455554 58999999999986 899999999999999877
Q ss_pred CCCCCHHH
Q 019145 265 GSSITSKD 272 (345)
Q Consensus 265 ~~~it~~~ 272 (345)
++.++..+
T Consensus 457 ~~~~~~~d 464 (550)
T COG3604 457 GRLTRRGD 464 (550)
T ss_pred cccCCCcc
Confidence 55555444
No 196
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=7.4e-13 Score=122.57 Aligned_cols=174 Identities=20% Similarity=0.181 Sum_probs=126.2
Q ss_pred CCCccccccHHHHHHHHHHHHcCC-------------CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC-
Q 019145 58 KQVKDVAHQEEVVRVLTNTLETAN-------------CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD- 123 (345)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~-------------~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~- 123 (345)
..|+++.|-.++++.+.+.+.-.. ..++|||||||||||.+|.+++... +.+|+.+.++.
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~------~~~fisvKGPEl 737 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS------NLRFISVKGPEL 737 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC------CeeEEEecCHHH
Confidence 467889898888888877775421 2349999999999999999999987 77888877654
Q ss_pred -----ccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH-----------HHHHHHHHHHhhcC--Cc
Q 019145 124 -----DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTMETYS--KV 185 (345)
Q Consensus 124 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~-----------~~~~~l~~~le~~~--~~ 185 (345)
..+...++..+...... ++.|+|+||+|.+.+ .+.+.|+.-++... ..
T Consensus 738 L~KyIGaSEq~vR~lF~rA~~a--------------~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~G 803 (952)
T KOG0735|consen 738 LSKYIGASEQNVRDLFERAQSA--------------KPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDG 803 (952)
T ss_pred HHHHhcccHHHHHHHHHHhhcc--------------CCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccce
Confidence 23345566666664433 456999999999843 46778888877433 34
Q ss_pred eEEEEecCcccccchhhhcc--ce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHH
Q 019145 186 TRFFFICNYISRIIEPLASR--CA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRR 252 (345)
Q Consensus 186 ~~ii~~~n~~~~l~~~l~~r--~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~ 252 (345)
+.++.+|.+++.+++++++- .+ .+.++.|+..+..++++.......+. ++..++.++..+.|-...
T Consensus 804 V~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~-~~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 804 VYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD-TDVDLECLAQKTDGFTGA 872 (952)
T ss_pred EEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc-cccchHHHhhhcCCCchh
Confidence 55666778899999999984 44 68889999999999998877543322 233478888776554333
No 197
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=6.9e-13 Score=115.59 Aligned_cols=156 Identities=22% Similarity=0.230 Sum_probs=108.1
Q ss_pred CCccccccHHHHHHHHHHHHc--------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccch--H
Q 019145 59 QVKDVAHQEEVVRVLTNTLET--------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI--N 128 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~--------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~--~ 128 (345)
.|++++.++.+...|...... ....|++||||||||||.+|+.|+..- +.++-.+.+.|..+. +
T Consensus 353 pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S------GlDYA~mTGGDVAPlG~q 426 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS------GLDYAIMTGGDVAPLGAQ 426 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhc------CCceehhcCCCccccchH
Confidence 488899888887777665532 334579999999999999999999986 566666666664332 1
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCC---------CHHH---HHHHHHHHhhcCCceEEEEecCccc
Q 019145 129 VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM---------TEDA---QNALRRTMETYSKVTRFFFICNYIS 196 (345)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l---------~~~~---~~~l~~~le~~~~~~~ii~~~n~~~ 196 (345)
.+. .+......... ..+.-+|||||+|.+ +... +|.|+---.+-+....+++++|.+.
T Consensus 427 aVT-kiH~lFDWakk---------S~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpg 496 (630)
T KOG0742|consen 427 AVT-KIHKLFDWAKK---------SRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG 496 (630)
T ss_pred HHH-HHHHHHHHHhh---------cccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCcc
Confidence 121 22222111111 113348999999976 2333 3333333334456778899999999
Q ss_pred ccchhhhccce-eEEecCCCHHHHHHHHHHHHHHh
Q 019145 197 RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEE 230 (345)
Q Consensus 197 ~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~ 230 (345)
.++-++.+|.+ +++|+.|-.++...+|..++.+.
T Consensus 497 dlDsAV~DRide~veFpLPGeEERfkll~lYlnky 531 (630)
T KOG0742|consen 497 DLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKY 531 (630)
T ss_pred chhHHHHhhhhheeecCCCChHHHHHHHHHHHHHH
Confidence 99999999998 89999999999999998887653
No 198
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.48 E-value=8.4e-12 Score=116.77 Aligned_cols=211 Identities=20% Similarity=0.224 Sum_probs=139.0
Q ss_pred CCccccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHH
Q 019145 59 QVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (345)
.+..++|....+..+...+.. ....+++++|++||||+++|+.+.... .....+++.++|.... ...+...+-.
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s---~~~~~~~v~v~c~~~~-~~~~~~~lfg 212 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLS---DRKDKRFVAINCAAIP-ENLLESELFG 212 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhC---CcCCCCeEEEECCCCC-hHHHHHHhcC
Confidence 455688877777666666653 233458999999999999999998764 2235678889988642 2222221111
Q ss_pred HHHhhhcC--CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCcc-------c
Q 019145 137 FAAVAVGS--GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------S 196 (345)
Q Consensus 137 ~~~~~~~~--~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~-------~ 196 (345)
........ ....+....+..+.|+|||++.++...|..|++++++.. .++++|++++.. .
T Consensus 213 ~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~ 292 (445)
T TIGR02915 213 YEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEG 292 (445)
T ss_pred CCCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcC
Confidence 00000000 111222233566799999999999999999999998632 256788887654 2
Q ss_pred ccchhhhccce--eEEecCCCH--HHHHHHHHHH----HHHhC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHh
Q 019145 197 RIIEPLASRCA--KFRFKPLSE--EVMSSRVLHI----CNEEG---LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF 264 (345)
Q Consensus 197 ~l~~~l~~r~~--~i~~~~~~~--~~~~~~l~~~----~~~~~---~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~ 264 (345)
.+.+.+..|+. .+.++|+.. +++..++..+ +...+ ..+++++++.|..+. .||+|.+.+.++.++..+
T Consensus 293 ~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~ 372 (445)
T TIGR02915 293 TFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMA 372 (445)
T ss_pred CccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 34555666665 566667643 4544444443 33334 358999999999876 899999999999998766
Q ss_pred -CCCCCHHHH
Q 019145 265 -GSSITSKDL 273 (345)
Q Consensus 265 -~~~it~~~v 273 (345)
+..|+.+++
T Consensus 373 ~~~~i~~~~l 382 (445)
T TIGR02915 373 EGNQITAEDL 382 (445)
T ss_pred CCCcccHHHc
Confidence 445777765
No 199
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.48 E-value=2.2e-12 Score=116.65 Aligned_cols=173 Identities=21% Similarity=0.225 Sum_probs=110.5
Q ss_pred cccccHHHHHHHHHHHH-------c---CC--------CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC
Q 019145 62 DVAHQEEVVRVLTNTLE-------T---AN--------CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~-------~---~~--------~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (345)
.++||+++++.+...+. . .. ..+++|+||||||||++|+++++.+ +.++..+++..
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l------~~pf~~~da~~ 151 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL------NVPFAIADATT 151 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc------CCCeEEechhh
Confidence 46799999988876652 1 11 2469999999999999999999987 45555555432
Q ss_pred ccc----hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------------HHHHHHHHHHhhcC--
Q 019145 124 DRG----INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYS-- 183 (345)
Q Consensus 124 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------------~~~~~l~~~le~~~-- 183 (345)
... .......+......... ....+...+|+|||+|.+++ .+++.|+++++...
T Consensus 152 L~~~gyvG~d~e~~L~~~~~~~~~------~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~ 225 (413)
T TIGR00382 152 LTEAGYVGEDVENILLKLLQAADY------DVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVAN 225 (413)
T ss_pred ccccccccccHHHHHHHHHHhCcc------cHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhcccee
Confidence 111 11122222222111100 00112446999999999976 58999999996321
Q ss_pred -----------CceEEEEecCcc---------------------------c-----------------------ccchhh
Q 019145 184 -----------KVTRFFFICNYI---------------------------S-----------------------RIIEPL 202 (345)
Q Consensus 184 -----------~~~~ii~~~n~~---------------------------~-----------------------~l~~~l 202 (345)
.++.+|.|+|-. . .+.|++
T Consensus 226 v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEf 305 (413)
T TIGR00382 226 VPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEF 305 (413)
T ss_pred cccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHH
Confidence 234455555430 0 134667
Q ss_pred hccce-eEEecCCCHHHHHHHHHHH----HH-------HhCC--CCCHHHHHHHHHhc
Q 019145 203 ASRCA-KFRFKPLSEEVMSSRVLHI----CN-------EEGL--NLDAEALSTLSSIS 246 (345)
Q Consensus 203 ~~r~~-~i~~~~~~~~~~~~~l~~~----~~-------~~~~--~i~~~~~~~l~~~s 246 (345)
..|++ ++.|.|++.+++.+++... .+ ..|+ .+++++++.|++.+
T Consensus 306 lgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~ 363 (413)
T TIGR00382 306 IGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKA 363 (413)
T ss_pred hCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhC
Confidence 77876 7889999999999988652 22 1243 47999999999875
No 200
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.48 E-value=1.6e-12 Score=102.31 Aligned_cols=137 Identities=34% Similarity=0.369 Sum_probs=93.4
Q ss_pred ccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHH---HHHhh
Q 019145 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT---FAAVA 141 (345)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 141 (345)
|++..+..+...+......+++++||||+|||++++.+++.+.. .+..++.+++............... .....
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR---PGAPFLYLNASDLLEGLVVAELFGHFLVRLLFE 78 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc---CCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHH
Confidence 66778888888887766667999999999999999999999741 2455666666543332222211110 00000
Q ss_pred hcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc------CCceEEEEecCccc--ccchhhhccce-eEEec
Q 019145 142 VGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY------SKVTRFFFICNYIS--RIIEPLASRCA-KFRFK 212 (345)
Q Consensus 142 ~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~------~~~~~ii~~~n~~~--~l~~~l~~r~~-~i~~~ 212 (345)
. .......++++||++.+.......+...++.. ...+.+|++++... .+.+.+.+|+. .+.++
T Consensus 79 ~--------~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 79 L--------AEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred h--------hccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeecC
Confidence 0 11234579999999999777777888888765 35678888887766 67888889984 56554
No 201
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.48 E-value=4.3e-12 Score=122.43 Aligned_cols=216 Identities=14% Similarity=0.082 Sum_probs=133.9
Q ss_pred CCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc-----------CCC-----------------
Q 019145 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-----------GPE----------------- 110 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~-----------~~~----------------- 110 (345)
.|.+++||+.++..+.-....+...++||.|++|||||++|+++++.+- |..
T Consensus 2 pf~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~ 81 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPS 81 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhccccc
Confidence 4778999999999888877777667799999999999999999998871 110
Q ss_pred -CCCCceeeeecCCccchHHHHHHH--HHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC----
Q 019145 111 -LYKSRVLELNASDDRGINVVRTKI--KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS---- 183 (345)
Q Consensus 111 -~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~---- 183 (345)
....+|+.+.+... .+.+...+ ...... .......+....+..++|+|||++.++...++.|+..+++..
T Consensus 82 ~~~~~pfv~~p~~~t--~~~l~G~~d~~~~l~~-g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~ 158 (633)
T TIGR02442 82 EQRPVPFVNLPLGAT--EDRVVGSLDIERALRE-GEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVE 158 (633)
T ss_pred ccCCCCeeeCCCCCc--HHHcCCcccHHHHhhc-CCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEE
Confidence 01223444333211 11000000 000000 000011222234466799999999999999999999998642
Q ss_pred ---------CceEEEEecCcc-cccchhhhccce-eEEecCCC-HHHHHHHHHHHHH-----------------------
Q 019145 184 ---------KVTRFFFICNYI-SRIIEPLASRCA-KFRFKPLS-EEVMSSRVLHICN----------------------- 228 (345)
Q Consensus 184 ---------~~~~ii~~~n~~-~~l~~~l~~r~~-~i~~~~~~-~~~~~~~l~~~~~----------------------- 228 (345)
..+.+|.++|.. ..+.+++.+|+. .+.+..+. .++..+++.....
T Consensus 159 r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i 238 (633)
T TIGR02442 159 REGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRI 238 (633)
T ss_pred ECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHH
Confidence 345666666754 357789999997 45555543 3443333332110
Q ss_pred ------HhCCCCCHHHHHHHHHhc---CC-CHHHHHHHHHHHHHHh---C-CCCCHHHHHHhh
Q 019145 229 ------EEGLNLDAEALSTLSSIS---QG-DLRRAITYLQGAARLF---G-SSITSKDLISVS 277 (345)
Q Consensus 229 ------~~~~~i~~~~~~~l~~~s---~g-~~r~~~~~l~~~~~~~---~-~~it~~~v~~~~ 277 (345)
...+.+++++++.+++.+ +- .+|..+..+..+...+ + ..|+.+||.+++
T Consensus 239 ~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~ 301 (633)
T TIGR02442 239 ARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAA 301 (633)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 124678899988888765 22 3677666665443333 3 569999997764
No 202
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=1.8e-12 Score=115.00 Aligned_cols=203 Identities=17% Similarity=0.209 Sum_probs=134.8
Q ss_pred ccccccHHHHHHHHHHHHc----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccch-HHHHHHHH
Q 019145 61 KDVAHQEEVVRVLTNTLET----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGI-NVVRTKIK 135 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~----~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 135 (345)
..+.|++..+..++.|+.. .....++++|.||||||.+...+...+.+ .......+.++|...... ..+.....
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~-~~~~~~~v~inc~sl~~~~aiF~kI~~ 228 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSK-SSKSPVTVYINCTSLTEASAIFKKIFS 228 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhh-hcccceeEEEeeccccchHHHHHHHHH
Confidence 4567888888777777754 45556999999999999999988877632 223446678888763333 23333333
Q ss_pred HHHHhhhcCCCC--------CCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC---CceEEEEecCccc---ccchh
Q 019145 136 TFAAVAVGSGQR--------RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS---KVTRFFFICNYIS---RIIEP 201 (345)
Q Consensus 136 ~~~~~~~~~~~~--------~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~---~~~~ii~~~n~~~---~l~~~ 201 (345)
.+.....+.+.. .........-++++||+|.|....+..|+.+++++. ....+|.++|..+ ++.+.
T Consensus 229 ~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~Lpr 308 (529)
T KOG2227|consen 229 SLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPR 308 (529)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhh
Confidence 331211111100 000011234589999999998877778887777643 3344444566554 45566
Q ss_pred hhccce----eEEecCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHhc---CCCHHHHHHHHHHHHHHh
Q 019145 202 LASRCA----KFRFKPLSEEVMSSRVLHICNEEGLN-LDAEALSTLSSIS---QGDLRRAITYLQGAARLF 264 (345)
Q Consensus 202 l~~r~~----~i~~~~~~~~~~~~~l~~~~~~~~~~-i~~~~~~~l~~~s---~g~~r~~~~~l~~~~~~~ 264 (345)
|..++. .+.|+||+.+++..+++.++..+... +-+.+++.+++.+ .||+|.++..++.+...+
T Consensus 309 L~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI~ 379 (529)
T KOG2227|consen 309 LNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEIA 379 (529)
T ss_pred hhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 666443 89999999999999999998876543 4556788887654 799999999998666554
No 203
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.46 E-value=2e-11 Score=114.94 Aligned_cols=212 Identities=20% Similarity=0.262 Sum_probs=140.8
Q ss_pred CCccccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHH
Q 019145 59 QVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (345)
.+.+++|....+..+...+.. ....+++++|++||||+++|+++++.. .....+|+.++|... ....+...+..
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s---~~~~~~~i~i~c~~~-~~~~~~~~lfg 211 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHS---PRAKAPFIALNMAAI-PKDLIESELFG 211 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcC---CCCCCCeEeeeCCCC-CHHHHHHHhcC
Confidence 456788887777666655543 223358999999999999999998864 223568899999764 22222221111
Q ss_pred HHHhh-hcCC-CCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCcc-------c
Q 019145 137 FAAVA-VGSG-QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------S 196 (345)
Q Consensus 137 ~~~~~-~~~~-~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~-------~ 196 (345)
..... .+.. ...+....+..+.++|||++.++...+..|++++++.. .++++|++++.. .
T Consensus 212 ~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~ 291 (469)
T PRK10923 212 HEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEG 291 (469)
T ss_pred CCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcC
Confidence 00000 0000 01111223456789999999999999999999998642 245788887643 2
Q ss_pred ccchhhhccce--eEEecCCCH--HHHHHHHHHHHH----HhCC---CCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHh
Q 019145 197 RIIEPLASRCA--KFRFKPLSE--EVMSSRVLHICN----EEGL---NLDAEALSTLSSIS-QGDLRRAITYLQGAARLF 264 (345)
Q Consensus 197 ~l~~~l~~r~~--~i~~~~~~~--~~~~~~l~~~~~----~~~~---~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~ 264 (345)
.+.+.+..|+. .+.++|+.. +++..++..++. ..+. .+++++++.|..+. .||+|.+.|.++.++..+
T Consensus 292 ~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 292 KFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred CchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 35577777775 566677653 566555555443 3332 48999999999876 899999999999988765
Q ss_pred -CCCCCHHHHH
Q 019145 265 -GSSITSKDLI 274 (345)
Q Consensus 265 -~~~it~~~v~ 274 (345)
+..|+.+++.
T Consensus 372 ~~~~i~~~~l~ 382 (469)
T PRK10923 372 AGQEVLIQDLP 382 (469)
T ss_pred CCCcccHHHCc
Confidence 5568887764
No 204
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.45 E-value=1.1e-11 Score=101.02 Aligned_cols=194 Identities=20% Similarity=0.251 Sum_probs=136.9
Q ss_pred hhhhhCCCCCccccccHHHHHHHH----HHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc
Q 019145 51 WVEKYRPKQVKDVAHQEEVVRVLT----NTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (345)
Q Consensus 51 ~~~~~~p~~~~~~~g~~~~~~~l~----~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (345)
-...+.|..+.+++|-+.....|. ..+......|+||+|..|||||++++++.+++... +...++++..+...
T Consensus 50 pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~---glrLVEV~k~dl~~ 126 (287)
T COG2607 50 PVPDPDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE---GLRLVEVDKEDLAT 126 (287)
T ss_pred CCCCCCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc---CCeEEEEcHHHHhh
Confidence 345666778889999766665554 34445555679999999999999999999998554 34588888776555
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-HHHHHHHHHHHh----hcCCceEEEEecCcccccchh
Q 019145 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-EDAQNALRRTME----TYSKVTRFFFICNYISRIIEP 201 (345)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-~~~~~~l~~~le----~~~~~~~ii~~~n~~~~l~~~ 201 (345)
...+.+.++.. ..+-||++|++..=. .+....|...+| ..|.++.+..|+|..+.++..
T Consensus 127 Lp~l~~~Lr~~----------------~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~ 190 (287)
T COG2607 127 LPDLVELLRAR----------------PEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPED 190 (287)
T ss_pred HHHHHHHHhcC----------------CceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHh
Confidence 55554444432 234589999976443 234455555554 567788888888776554422
Q ss_pred ----------------------hhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHH-----HHhcCCCHHHH
Q 019145 202 ----------------------LASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTL-----SSISQGDLRRA 253 (345)
Q Consensus 202 ----------------------l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l-----~~~s~g~~r~~ 253 (345)
+..|+. .+.|.|++.++..+++..+++..++.++++.++.= ..+.+.+-|.+
T Consensus 191 ~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~RSGR~A 270 (287)
T COG2607 191 MKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGRSGRVA 270 (287)
T ss_pred hhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCccHhH
Confidence 234555 78999999999999999999999999987554443 34456777888
Q ss_pred HHHHHHHHHH
Q 019145 254 ITYLQGAARL 263 (345)
Q Consensus 254 ~~~l~~~~~~ 263 (345)
..-++.++..
T Consensus 271 ~QF~~~~~g~ 280 (287)
T COG2607 271 WQFIRDLAGR 280 (287)
T ss_pred HHHHHHHHhh
Confidence 8877777644
No 205
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=4.8e-12 Score=116.73 Aligned_cols=201 Identities=17% Similarity=0.188 Sum_probs=140.8
Q ss_pred ccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC----
Q 019145 61 KDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD---- 123 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~---- 123 (345)
.++.|....+..++..+.- ..+..+|+|||||||||.++++++++. +..++.++++.
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~------~a~~~~i~~peli~k 257 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEY------GAFLFLINGPELISK 257 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHh------CceeEecccHHHHHh
Confidence 4566666666666655532 233459999999999999999999998 56677777653
Q ss_pred --ccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH----------HHHHHHHHHHhhcC--CceEEE
Q 019145 124 --DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE----------DAQNALRRTMETYS--KVTRFF 189 (345)
Q Consensus 124 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~----------~~~~~l~~~le~~~--~~~~ii 189 (345)
..+...++..+....... .+.+++|||++.+-+ .....++.+++... .+++++
T Consensus 258 ~~gEte~~LR~~f~~a~k~~-------------~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl 324 (693)
T KOG0730|consen 258 FPGETESNLRKAFAEALKFQ-------------VPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVL 324 (693)
T ss_pred cccchHHHHHHHHHHHhccC-------------CCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEE
Confidence 123344455555443322 146999999998853 34567888888765 667777
Q ss_pred EecCcccccchhhhc-cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh-CC
Q 019145 190 FICNYISRIIEPLAS-RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GS 266 (345)
Q Consensus 190 ~~~n~~~~l~~~l~~-r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~-~~ 266 (345)
.++|.++.+++++++ |++ .+.+.-|+..+..++++..++..+.. +...+..++..+.|....-+..+...+... ..
T Consensus 325 ~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r 403 (693)
T KOG0730|consen 325 AATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGADLAALCREASLQATR 403 (693)
T ss_pred EecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHHHHHHHHHHHHHHHhh
Confidence 888999999999996 776 78999999999999999999887775 677899999998887755444444444332 22
Q ss_pred CCCHHHHHHhhCCCCH
Q 019145 267 SITSKDLISVSGVIPP 282 (345)
Q Consensus 267 ~it~~~v~~~~~~~~~ 282 (345)
+ +++++..+.....+
T Consensus 404 ~-~~~~~~~A~~~i~p 418 (693)
T KOG0730|consen 404 R-TLEIFQEALMGIRP 418 (693)
T ss_pred h-hHHHHHHHHhcCCc
Confidence 1 44455544444333
No 206
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.44 E-value=1.4e-12 Score=111.01 Aligned_cols=188 Identities=21% Similarity=0.290 Sum_probs=108.0
Q ss_pred ccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHH--------
Q 019145 63 VAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI-------- 134 (345)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 134 (345)
++|++..++.|.+++..+....++++||.|+|||++++.+.+.+..... ..+.+..............+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~---~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGY---KVVYIDFLEESNESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EE---CCCHHCCTTBSHHHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCC---cEEEEecccchhhhHHHHHHHHHHHHHH
Confidence 5789999999999999887778999999999999999999998732211 22222332222222222210
Q ss_pred -HHHHHhhhcCCC------CCCCC-------------CCCCeEEEEEcCCCCCC------HHHHHHHHHHHhh--cCCce
Q 019145 135 -KTFAAVAVGSGQ------RRGGY-------------PCPPYKIIILDEADSMT------EDAQNALRRTMET--YSKVT 186 (345)
Q Consensus 135 -~~~~~~~~~~~~------~~~~~-------------~~~~~~iliiDE~~~l~------~~~~~~l~~~le~--~~~~~ 186 (345)
............ ..... .....-+|+|||++.+. +.....|..+++. ...+.
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTE
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCc
Confidence 010111000000 00000 01123799999999987 4556677777776 23455
Q ss_pred EEEEecCcccc------cchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHhcCCCHHHHH
Q 019145 187 RFFFICNYISR------IIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNL--DAEALSTLSSISQGDLRRAI 254 (345)
Q Consensus 187 ~ii~~~n~~~~------l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i--~~~~~~~l~~~s~g~~r~~~ 254 (345)
.+|+++..... -...+..|+..+.++|++.++..+++...++.. ..+ +++.++.+...+||+|+.+.
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHh
Confidence 56666543221 123456677789999999999999999988766 544 99999999999999998754
No 207
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.43 E-value=3.4e-11 Score=104.95 Aligned_cols=180 Identities=17% Similarity=0.168 Sum_probs=114.8
Q ss_pred hhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHH
Q 019145 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (345)
Q Consensus 54 ~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (345)
.+.|..-.+++-.......+..++..+ .+++|.||||||||++++.+++.+ +.+++.+++.......++-..
T Consensus 38 ~~~p~~d~~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l------~~~~~rV~~~~~l~~~DliG~ 109 (327)
T TIGR01650 38 EHVPDIDPAYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARL------NWPCVRVNLDSHVSRIDLVGK 109 (327)
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHH------CCCeEEEEecCCCChhhcCCC
Confidence 344554445666667777777777554 369999999999999999999999 677777777654333221110
Q ss_pred HH-HHHHhhhcCCCCCCCCC---CCCeEEEEEcCCCCCCHHHHHHHHHHHhhc--------------CCceEEEEecCcc
Q 019145 134 IK-TFAAVAVGSGQRRGGYP---CPPYKIIILDEADSMTEDAQNALRRTMETY--------------SKVTRFFFICNYI 195 (345)
Q Consensus 134 ~~-~~~~~~~~~~~~~~~~~---~~~~~iliiDE~~~l~~~~~~~l~~~le~~--------------~~~~~ii~~~n~~ 195 (345)
.. ...... ....-..++. .....++++||++..+++.+..|..++|.. .+..++|.|+|+.
T Consensus 110 ~~~~l~~g~-~~~~f~~GpL~~A~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~ 188 (327)
T TIGR01650 110 DAIVLKDGK-QITEFRDGILPWALQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTI 188 (327)
T ss_pred ceeeccCCc-ceeEEecCcchhHHhCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCC
Confidence 00 000000 0000000000 123457999999999999999999998731 1356778888874
Q ss_pred c------------ccchhhhcccee-EEecCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHH
Q 019145 196 S------------RIIEPLASRCAK-FRFKPLSEEVMSSRVLHICNEEGLN--LDAEALSTLSS 244 (345)
Q Consensus 196 ~------------~l~~~l~~r~~~-i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~~~~l~~ 244 (345)
. .+..+..+|+.+ +.+.-|+.++-.+++...+. ++. .+++.++.+++
T Consensus 189 g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~--~~~~~~~~~i~~~mV~ 250 (327)
T TIGR01650 189 GLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAK--GFDDTEGKDIINAMVR 250 (327)
T ss_pred CcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhcc--CCCccchHHHHHHHHH
Confidence 3 367899999984 57999999999999876542 221 13445555544
No 208
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.41 E-value=4.5e-13 Score=108.65 Aligned_cols=117 Identities=29% Similarity=0.404 Sum_probs=71.2
Q ss_pred CCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC----------------
Q 019145 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS---------------- 122 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~---------------- 122 (345)
+|.+++||+..+.++.-+...+ .|++|+||||||||++|+.+..-+ +........++...
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG~--h~lLl~GppGtGKTmlA~~l~~lL--P~l~~~e~le~~~i~s~~~~~~~~~~~~~~ 76 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAGG--HHLLLIGPPGTGKTMLARRLPSLL--PPLTEEEALEVSKIYSVAGLGPDEGLIRQR 76 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHHCS----CCEECCESS--S-TT---S---EEEE--
T ss_pred ChhhhcCcHHHHHHHHHHHcCC--CCeEEECCCCCCHHHHHHHHHHhC--CCCchHHHhhhccccccccCCCCCceecCC
Confidence 5889999999999998777654 589999999999999999998766 21111111111110
Q ss_pred CccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc
Q 019145 123 DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (345)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~ 182 (345)
..+.... ..........+....++....+.++|||+||+..+++...+.|++.+++.
T Consensus 77 Pfr~phh---s~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g 133 (206)
T PF01078_consen 77 PFRAPHH---SASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDG 133 (206)
T ss_dssp -EEEE-T---T--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHS
T ss_pred CcccCCC---CcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCC
Confidence 0000000 00111111111223455566678889999999999999999999999864
No 209
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.41 E-value=4.5e-11 Score=112.30 Aligned_cols=212 Identities=21% Similarity=0.224 Sum_probs=134.7
Q ss_pred CccccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHH
Q 019145 60 VKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTF 137 (345)
Q Consensus 60 ~~~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (345)
+..++|....+..+...+.. ....+++++|++||||+++|+.+.... .....+++.++|..... ..+...+-..
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s---~~~~~~~~~i~c~~~~~-~~~~~~lfg~ 217 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNS---RRAKGPFIKVNCAALPE-SLLESELFGH 217 (457)
T ss_pred ccceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhC---CCCCCCeEEEECCCCCH-HHHHHHhcCC
Confidence 34577766655555554433 223358999999999999999998764 22356888899876422 2222111110
Q ss_pred HHhhhcC--CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCccc-------c
Q 019145 138 AAVAVGS--GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-------R 197 (345)
Q Consensus 138 ~~~~~~~--~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~~-------~ 197 (345)
....... ....+....+..++|+|||++.++...+..|+.++++.. .++++|++++... .
T Consensus 218 ~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~ 297 (457)
T PRK11361 218 EKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGT 297 (457)
T ss_pred CCCCCCCCCCCCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCC
Confidence 0000000 001122233556799999999999999999999998532 2467888886432 3
Q ss_pred cchhhhccce--eEEecCCCH--HHHHHHHHHHH----HHhC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHh-
Q 019145 198 IIEPLASRCA--KFRFKPLSE--EVMSSRVLHIC----NEEG---LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF- 264 (345)
Q Consensus 198 l~~~l~~r~~--~i~~~~~~~--~~~~~~l~~~~----~~~~---~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~- 264 (345)
+.+.+..++. .+.++|+.. +++..++..++ ...+ ..+++++++.+..+. .||+|.+.+.++.++..+
T Consensus 298 ~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~~ 377 (457)
T PRK11361 298 FREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNS 377 (457)
T ss_pred chHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhCC
Confidence 4455666655 456666642 45544443333 3223 358999999999876 899999999999888665
Q ss_pred CCCCCHHHHHH
Q 019145 265 GSSITSKDLIS 275 (345)
Q Consensus 265 ~~~it~~~v~~ 275 (345)
+..|+.+++..
T Consensus 378 ~~~i~~~~l~~ 388 (457)
T PRK11361 378 GPIIFSEDLPP 388 (457)
T ss_pred CCcccHHHChH
Confidence 44677777653
No 210
>PRK15115 response regulator GlrR; Provisional
Probab=99.39 E-value=9.1e-11 Score=109.77 Aligned_cols=212 Identities=17% Similarity=0.198 Sum_probs=133.0
Q ss_pred cccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHH
Q 019145 62 DVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (345)
.++|....+..+...+.. ....+++++|++|+||+++|+.+.+.. ...+.+++.++|... ....+...+-....
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s---~r~~~~f~~i~c~~~-~~~~~~~~lfg~~~ 210 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNAS---PRASKPFIAINCGAL-PEQLLESELFGHAR 210 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhc---CCCCCCeEEEeCCCC-CHHHHHHHhcCCCc
Confidence 456655544444333322 233458999999999999999998864 223568899998864 22222221111000
Q ss_pred hhhcC--CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCcc-------cccc
Q 019145 140 VAVGS--GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------SRII 199 (345)
Q Consensus 140 ~~~~~--~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~-------~~l~ 199 (345)
..... ....+....+..+.|+|||++.++...|..|++++++.. .++++|++++.. ..+.
T Consensus 211 ~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~ 290 (444)
T PRK15115 211 GAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFR 290 (444)
T ss_pred CCCCCCccCCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCcc
Confidence 00000 001112223456799999999999999999999998643 146788877642 1233
Q ss_pred hhhhccce--eEEecCCCH--HHHHHHHHHHHH----HhC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHh-CC
Q 019145 200 EPLASRCA--KFRFKPLSE--EVMSSRVLHICN----EEG---LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF-GS 266 (345)
Q Consensus 200 ~~l~~r~~--~i~~~~~~~--~~~~~~l~~~~~----~~~---~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~-~~ 266 (345)
+.+..++. .+.++|+.. +++..++..++. ..+ ..+++++++.|..+. .||+|.+.+.++.++..+ +.
T Consensus 291 ~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~~~~ 370 (444)
T PRK15115 291 EDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSP 370 (444)
T ss_pred HHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCC
Confidence 44555554 456666643 455544444433 233 248999999999988 999999999999988665 45
Q ss_pred CCCHHHHHHhh
Q 019145 267 SITSKDLISVS 277 (345)
Q Consensus 267 ~it~~~v~~~~ 277 (345)
.|+.+++...+
T Consensus 371 ~i~~~~l~~~~ 381 (444)
T PRK15115 371 VISDALVEQAL 381 (444)
T ss_pred ccChhhhhhhh
Confidence 68888775433
No 211
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.38 E-value=3.5e-11 Score=112.09 Aligned_cols=157 Identities=23% Similarity=0.274 Sum_probs=98.1
Q ss_pred CCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc-ch--------
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR-GI-------- 127 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~-~~-------- 127 (345)
+.+|+++.|+...++.+.-.+..+ .+++|.||||+|||++++.+...+. ......+++....... +.
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa~~g--~~vlliG~pGsGKTtlar~l~~llp--~~~~~~~le~~~i~s~~g~~~~~~~~~ 263 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAAAGG--HNLLLFGPPGSGKTMLASRLQGILP--PLTNEEAIETARIWSLVGKLIDRKQIK 263 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhccCC--CEEEEEecCCCCHHHHHHHHhcccC--CCCCcEEEeccccccchhhhccccccc
Confidence 348899999999988887666544 4799999999999999999987652 1111122222111000 00
Q ss_pred -HHHHH---HHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-------------CceEEEE
Q 019145 128 -NVVRT---KIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFF 190 (345)
Q Consensus 128 -~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-------------~~~~ii~ 190 (345)
..++. ..........+....++....+..++|||||++.+++..++.|++.+|+.. ..+.+|.
T Consensus 264 ~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIa 343 (499)
T TIGR00368 264 QRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVA 343 (499)
T ss_pred cCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEE
Confidence 00000 000000000111123333445677899999999999999999999998642 4567888
Q ss_pred ecCcc-----------------------cccchhhhccce-eEEecCCCHH
Q 019145 191 ICNYI-----------------------SRIIEPLASRCA-KFRFKPLSEE 217 (345)
Q Consensus 191 ~~n~~-----------------------~~l~~~l~~r~~-~i~~~~~~~~ 217 (345)
++|+. .++..++++|++ .+.+++++.+
T Consensus 344 a~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 344 AMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred ecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 87742 147888999998 5677766543
No 212
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.38 E-value=1.5e-11 Score=109.85 Aligned_cols=108 Identities=21% Similarity=0.297 Sum_probs=76.9
Q ss_pred CCeEEEEEcCCCCCCH------------HHHHHHHHHHhhcC----------CceEEEEec----Ccccccchhhhccce
Q 019145 154 PPYKIIILDEADSMTE------------DAQNALRRTMETYS----------KVTRFFFIC----NYISRIIEPLASRCA 207 (345)
Q Consensus 154 ~~~~iliiDE~~~l~~------------~~~~~l~~~le~~~----------~~~~ii~~~----n~~~~l~~~l~~r~~ 207 (345)
...+||||||+|++.. .+|..|++++|... .+..||+.+ ..+..+.|.+..|+.
T Consensus 246 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~P 325 (441)
T TIGR00390 246 EQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFP 325 (441)
T ss_pred HcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccc
Confidence 3578999999999852 36889999998522 234445443 245558899999998
Q ss_pred -eEEecCCCHHHHHHHHHH-----------HHHHhCCC--CCHHHHHHHHHhc--------CCCHHHHHHHHHHHH
Q 019145 208 -KFRFKPLSEEVMSSRVLH-----------ICNEEGLN--LDAEALSTLSSIS--------QGDLRRAITYLQGAA 261 (345)
Q Consensus 208 -~i~~~~~~~~~~~~~l~~-----------~~~~~~~~--i~~~~~~~l~~~s--------~g~~r~~~~~l~~~~ 261 (345)
++.+.+++.+++..+|.. .++.+|+. ++++++..|++.+ +--.|.+-..++.+.
T Consensus 326 i~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l 401 (441)
T TIGR00390 326 IRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLL 401 (441)
T ss_pred eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 789999999999988732 23455654 7999999998764 334566666665554
No 213
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.38 E-value=1.5e-10 Score=109.00 Aligned_cols=211 Identities=20% Similarity=0.248 Sum_probs=139.9
Q ss_pred ccccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHH
Q 019145 61 KDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA 138 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (345)
..++|.......+...+.. +....+++.|++||||+++++++.+.. .....+++.++|... ..+.+...+-...
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~---~~~~~~~~~~~c~~~-~~~~~~~~lfg~~ 209 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHS---PRANGPFIALNMAAI-PKDLIESELFGHE 209 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhC---CCCCCCeEEEeCCCC-CHHHHHHHhcCCC
Confidence 4577776666555555433 233358999999999999999998864 223568888998764 2222222220000
Q ss_pred Hhhh-c-CCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCccc-------cc
Q 019145 139 AVAV-G-SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-------RI 198 (345)
Q Consensus 139 ~~~~-~-~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~~-------~l 198 (345)
.... + .....+....+..+.|+|||++.++...+..|++++++.. .++++|++++... .+
T Consensus 210 ~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f 289 (463)
T TIGR01818 210 KGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKF 289 (463)
T ss_pred CCCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCc
Confidence 0000 0 0001111223446789999999999999999999998642 2467888876432 34
Q ss_pred chhhhccce--eEEecCCC--HHHHHHHHHHHHH----HhC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHh-C
Q 019145 199 IEPLASRCA--KFRFKPLS--EEVMSSRVLHICN----EEG---LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF-G 265 (345)
Q Consensus 199 ~~~l~~r~~--~i~~~~~~--~~~~~~~l~~~~~----~~~---~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~-~ 265 (345)
.+.+..|+. .++++|+. .+++..++..++. ..+ ..+++++++.|..+. .||+|.+.+.++.++..+ +
T Consensus 290 ~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~~~ 369 (463)
T TIGR01818 290 REDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMASG 369 (463)
T ss_pred HHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCC
Confidence 456777765 67778876 5677776665543 333 358999999999886 899999999999988766 4
Q ss_pred CCCCHHHHHH
Q 019145 266 SSITSKDLIS 275 (345)
Q Consensus 266 ~~it~~~v~~ 275 (345)
..|+.+++..
T Consensus 370 ~~i~~~~l~~ 379 (463)
T TIGR01818 370 DEVLVSDLPA 379 (463)
T ss_pred CcccHHhchH
Confidence 5688877753
No 214
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.37 E-value=5.2e-13 Score=104.25 Aligned_cols=116 Identities=23% Similarity=0.219 Sum_probs=75.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDE 163 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE 163 (345)
+++|+||||||||++++.+++.+ +..++.+++........+....... ................+..+++|||
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~------~~~~~~i~~~~~~~~~dl~g~~~~~-~~~~~~~~~~l~~a~~~~~il~lDE 73 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL------GRPVIRINCSSDTTEEDLIGSYDPS-NGQFEFKDGPLVRAMRKGGILVLDE 73 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH------TCEEEEEE-TTTSTHHHHHCEEET--TTTTCEEE-CCCTTHHEEEEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHh------hcceEEEEeccccccccceeeeeec-ccccccccccccccccceeEEEECC
Confidence 48999999999999999999999 7788888887755554432211110 0000000000000112567999999
Q ss_pred CCCCCHHHHHHHHHHHhhcC-------------C------ceEEEEecCccc----ccchhhhccc
Q 019145 164 ADSMTEDAQNALRRTMETYS-------------K------VTRFFFICNYIS----RIIEPLASRC 206 (345)
Q Consensus 164 ~~~l~~~~~~~l~~~le~~~-------------~------~~~ii~~~n~~~----~l~~~l~~r~ 206 (345)
++..+.+.++.|..++++.. . +..+|+++|+.. .+.+++++||
T Consensus 74 in~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 74 INRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp CGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred cccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 99999999999999998422 1 278888888877 7888998886
No 215
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.37 E-value=6.1e-11 Score=113.44 Aligned_cols=126 Identities=14% Similarity=0.131 Sum_probs=88.2
Q ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHhhcC---------------------CceEEEEecCcc--cccchhhhccce---
Q 019145 154 PPYKIIILDEADSMTEDAQNALRRTMETYS---------------------KVTRFFFICNYI--SRIIEPLASRCA--- 207 (345)
Q Consensus 154 ~~~~iliiDE~~~l~~~~~~~l~~~le~~~---------------------~~~~ii~~~n~~--~~l~~~l~~r~~--- 207 (345)
++.++|+|||++.++...|..|++.+++.. ..+++|+++|.. ..+.+.+.+|+.
T Consensus 216 AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~~y~ 295 (608)
T TIGR00764 216 AHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIRGYG 295 (608)
T ss_pred CCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhcCCe
Confidence 456899999999999999999999996421 245678888764 468899999987
Q ss_pred e-EEecC---CCHHH---HHHHHHHHHHHhC--CCCCHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHh----
Q 019145 208 K-FRFKP---LSEEV---MSSRVLHICNEEG--LNLDAEALSTLSSIS----------QGDLRRAITYLQGAARLF---- 264 (345)
Q Consensus 208 ~-i~~~~---~~~~~---~~~~l~~~~~~~~--~~i~~~~~~~l~~~s----------~g~~r~~~~~l~~~~~~~---- 264 (345)
+ +.|.. .+.+. +..++.+.++..| ..++++++..+.+.+ ..+.|.+-+.+..+...+
T Consensus 296 v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~ 375 (608)
T TIGR00764 296 YEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSG 375 (608)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhcC
Confidence 2 34432 23333 4556666666664 358999999998542 245788888887764433
Q ss_pred CCCCCHHHHHHhhCC
Q 019145 265 GSSITSKDLISVSGV 279 (345)
Q Consensus 265 ~~~it~~~v~~~~~~ 279 (345)
...|+.++|.+++..
T Consensus 376 ~~~I~~ehV~~Ai~~ 390 (608)
T TIGR00764 376 KVYVTAEHVLKAKKL 390 (608)
T ss_pred CceecHHHHHHHHHH
Confidence 245999999876543
No 216
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=6.8e-12 Score=105.75 Aligned_cols=174 Identities=23% Similarity=0.259 Sum_probs=114.3
Q ss_pred hhCCCCCccccccHHHHHHHHHHHHcC-------------CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeee
Q 019145 54 KYRPKQVKDVAHQEEVVRVLTNTLETA-------------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (345)
Q Consensus 54 ~~~p~~~~~~~g~~~~~~~l~~~l~~~-------------~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 120 (345)
..+..+|+.+-|....+..+.+.+.-. .+..++||||||+|||.++++++..+ +.+++.+.
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m------g~nfl~v~ 198 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM------GVNFLKVV 198 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhc------CCceEEee
Confidence 344558888888888888887776431 22338999999999999999999998 77887776
Q ss_pred cCCccc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHhhcC
Q 019145 121 ASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETYS 183 (345)
Q Consensus 121 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le~~~ 183 (345)
++...+ ...+++.+...... ...++++||+|... ...+..|.++++...
T Consensus 199 ss~lv~kyiGEsaRlIRemf~yA~~~--------------~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmd 264 (388)
T KOG0651|consen 199 SSALVDKYIGESARLIRDMFRYAREV--------------IPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMD 264 (388)
T ss_pred HhhhhhhhcccHHHHHHHHHHHHhhh--------------CceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhc
Confidence 654222 22333333333322 22699999999762 244566666666433
Q ss_pred -----CceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHH---HhCCCCCHHHHHHHHHhcCC
Q 019145 184 -----KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICN---EEGLNLDAEALSTLSSISQG 248 (345)
Q Consensus 184 -----~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~---~~~~~i~~~~~~~l~~~s~g 248 (345)
..+.+|+++|.++.++++|.+ |.+ .++.+.|+..-...+++-... ..| .++.+++-.+.+..+|
T Consensus 265 gfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~G-eid~eaivK~~d~f~g 339 (388)
T KOG0651|consen 265 GFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHG-EIDDEAILKLVDGFNG 339 (388)
T ss_pred cchhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccc-cccHHHHHHHHhccCh
Confidence 468899999999999999998 444 566665555444443322111 112 3677777777666655
No 217
>PHA02244 ATPase-like protein
Probab=99.36 E-value=2.5e-11 Score=106.90 Aligned_cols=129 Identities=18% Similarity=0.173 Sum_probs=87.6
Q ss_pred HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCC
Q 019145 71 RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150 (345)
Q Consensus 71 ~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (345)
..+..|+..+. +++|+||||||||++|+++++.+ +.+++.++.... .. .... +.. ..+.-..+
T Consensus 110 ~ri~r~l~~~~--PVLL~GppGtGKTtLA~aLA~~l------g~pfv~In~l~d----~~-~L~G-~i~---~~g~~~dg 172 (383)
T PHA02244 110 ADIAKIVNANI--PVFLKGGAGSGKNHIAEQIAEAL------DLDFYFMNAIMD----EF-ELKG-FID---ANGKFHET 172 (383)
T ss_pred HHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHh------CCCEEEEecChH----HH-hhcc-ccc---ccccccch
Confidence 45566665554 69999999999999999999997 566776663210 00 0000 000 00000000
Q ss_pred C---CCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc-----------CCceEEEEecCcc-----------cccchhhhcc
Q 019145 151 Y---PCPPYKIIILDEADSMTEDAQNALRRTMETY-----------SKVTRFFFICNYI-----------SRIIEPLASR 205 (345)
Q Consensus 151 ~---~~~~~~iliiDE~~~l~~~~~~~l~~~le~~-----------~~~~~ii~~~n~~-----------~~l~~~l~~r 205 (345)
+ ......+|+|||++.++++.+..|..++++. ++++++|+++|.. ..+.+++++|
T Consensus 173 pLl~A~~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDR 252 (383)
T PHA02244 173 PFYEAFKKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDR 252 (383)
T ss_pred HHHHHhhcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhh
Confidence 0 0134569999999999999999999998632 3578899999873 4578999999
Q ss_pred ceeEEecCCCH
Q 019145 206 CAKFRFKPLSE 216 (345)
Q Consensus 206 ~~~i~~~~~~~ 216 (345)
|..+.|.-++.
T Consensus 253 Fv~I~~dyp~~ 263 (383)
T PHA02244 253 FAPIEFDYDEK 263 (383)
T ss_pred cEEeeCCCCcH
Confidence 99999988763
No 218
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=99.35 E-value=1.7e-11 Score=97.93 Aligned_cols=133 Identities=18% Similarity=0.141 Sum_probs=110.2
Q ss_pred eeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCccc
Q 019145 117 LELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (345)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~ 196 (345)
+.+-..+..+++.+++.+......+. ..+ ++|++++.++...+++|++.+|++|.++.+|++|+.+.
T Consensus 29 ~~~f~~~~i~Vd~iReii~~~~~~~~------------~~k-~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~ 95 (206)
T PRK08485 29 LRFFIKEEFKIEDAKEVIAEAYIAES------------EEK-IIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKN 95 (206)
T ss_pred eEEECCCCCCHHHHHHHHHHHhhCCC------------CcE-EEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 33334445788888887777544321 123 46789999999999999999999999999999999999
Q ss_pred ccchhhhcccee-------------EEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 019145 197 RIIEPLASRCAK-------------FRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL 263 (345)
Q Consensus 197 ~l~~~l~~r~~~-------------i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~ 263 (345)
.+.++++|||.. +.|.+++.+++.+++.. ..++++...+++.+.|+..+.|.+|.++...+....+
T Consensus 96 ~llpTI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~la~~s~r~~l~l~~q~l~~ 174 (206)
T PRK08485 96 LLLPTIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE-LEKENKLSKEELKELIESLLKECVKYKIPLNEEELEY 174 (206)
T ss_pred hCchHHHhhheeccccccccccccccccCCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHHHHHHHHHHcCccHHHHHH
Confidence 999999999986 67899999999999999 6788888889999999999999999987777666555
No 219
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.4e-11 Score=104.50 Aligned_cols=135 Identities=21% Similarity=0.308 Sum_probs=93.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcC---CCCCCCceeeeecCCcc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFG---PELYKSRVLELNASDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPP 155 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~---~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (345)
+|++||||||||++++++|+.+.- ........+++++..-. +...+...++........ .+.
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d---------~~~ 250 (423)
T KOG0744|consen 180 ILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVED---------RGN 250 (423)
T ss_pred EEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhC---------CCc
Confidence 799999999999999999999831 12233467777774321 222333333333322111 123
Q ss_pred eEEEEEcCCCCCCH---------------HHHHHHHHHHhhc--CCceEEEEecCcccccchhhhccce-eEEecCCCHH
Q 019145 156 YKIIILDEADSMTE---------------DAQNALRRTMETY--SKVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEE 217 (345)
Q Consensus 156 ~~iliiDE~~~l~~---------------~~~~~l~~~le~~--~~~~~ii~~~n~~~~l~~~l~~r~~-~i~~~~~~~~ 217 (345)
.-+++|||++.+.. .+.++++.-++.. .+++.++.|+|-.+.++.++.+|.+ +..+.+|+..
T Consensus 251 lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ 330 (423)
T KOG0744|consen 251 LVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAE 330 (423)
T ss_pred EEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhhHhhheeecCCccHH
Confidence 45788999998731 2467888888754 3566666677888999999999999 6778899999
Q ss_pred HHHHHHHHHHH
Q 019145 218 VMSSRVLHICN 228 (345)
Q Consensus 218 ~~~~~l~~~~~ 228 (345)
-+.++++....
T Consensus 331 ai~~Ilkscie 341 (423)
T KOG0744|consen 331 AIYEILKSCIE 341 (423)
T ss_pred HHHHHHHHHHH
Confidence 99998887654
No 220
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.34 E-value=4.3e-11 Score=107.12 Aligned_cols=152 Identities=24% Similarity=0.212 Sum_probs=100.0
Q ss_pred cccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhh
Q 019145 62 DVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA 141 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (345)
.++|+++.+..+..++..++ +++|.||||||||++++.+++.+ +.+++.+.+.......++.....-.....
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~--~vll~G~PG~gKT~la~~lA~~l------~~~~~~i~~t~~l~p~d~~G~~~~~~~~~ 96 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG--HVLLEGPPGVGKTLLARALARAL------GLPFVRIQCTPDLLPSDLLGTYAYAALLL 96 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC--CEEEECCCCccHHHHHHHHHHHh------CCCeEEEecCCCCCHHHhcCchhHhhhhc
Confidence 47788888877766666665 69999999999999999999999 67888888876544433321111111000
Q ss_pred -hcCCC-CCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc------------CCceEEEEecC-----cccccchhh
Q 019145 142 -VGSGQ-RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY------------SKVTRFFFICN-----YISRIIEPL 202 (345)
Q Consensus 142 -~~~~~-~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~------------~~~~~ii~~~n-----~~~~l~~~l 202 (345)
..... ..+....+-..++++||++..+++.++.|+..+++. +....+|.++| ....+++++
T Consensus 97 ~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ 176 (329)
T COG0714 97 EPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEAL 176 (329)
T ss_pred cCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHH
Confidence 00000 001111111159999999999999999999999862 12344555667 345579999
Q ss_pred hccc-eeEEecCCCHHHHHH
Q 019145 203 ASRC-AKFRFKPLSEEVMSS 221 (345)
Q Consensus 203 ~~r~-~~i~~~~~~~~~~~~ 221 (345)
.+|| -.+.++.|..++...
T Consensus 177 ldRf~~~~~v~yp~~~~e~~ 196 (329)
T COG0714 177 LDRFLLRIYVDYPDSEEEER 196 (329)
T ss_pred HhhEEEEEecCCCCchHHHH
Confidence 9999 577777774443333
No 221
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.34 E-value=1.1e-10 Score=99.88 Aligned_cols=214 Identities=16% Similarity=0.115 Sum_probs=131.8
Q ss_pred ccccHHH---HHHHHHHHHc---CCCCcEEEeCCCCCCHHHHHHHHHHHhcC---CCCCCCceeeeecCCccchHHHHHH
Q 019145 63 VAHQEEV---VRVLTNTLET---ANCPHMLFYGPPGTGKTTTALAIAHQLFG---PELYKSRVLELNASDDRGINVVRTK 133 (345)
Q Consensus 63 ~~g~~~~---~~~l~~~l~~---~~~~~lll~G~~G~GKT~la~~la~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (345)
.+|.+.. ++.+...+.. .+.++++|+|++|.|||++++.+.+.... .+....+++.+.++...+...+...
T Consensus 36 WIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~ 115 (302)
T PF05621_consen 36 WIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSA 115 (302)
T ss_pred eecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHH
Confidence 4565444 4566666654 45678999999999999999999987531 1122346777777665555544444
Q ss_pred HHHHHHhhhcCCCCCCC--------CCCCCeEEEEEcCCCCC---CHHHHHHHHHHHhhcC--CceEEEEecCc----cc
Q 019145 134 IKTFAAVAVGSGQRRGG--------YPCPPYKIIILDEADSM---TEDAQNALRRTMETYS--KVTRFFFICNY----IS 196 (345)
Q Consensus 134 ~~~~~~~~~~~~~~~~~--------~~~~~~~iliiDE~~~l---~~~~~~~l~~~le~~~--~~~~ii~~~n~----~~ 196 (345)
+-.....+......... ...-+.++|||||+|.+ +...+..+++.+.... -.+.+|+++.. .-
T Consensus 116 IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al 195 (302)
T PF05621_consen 116 ILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRAL 195 (302)
T ss_pred HHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHh
Confidence 33333222211111000 01124579999999986 2233444444433222 34456666532 22
Q ss_pred ccchhhhccceeEEecCCCH-HHHHHHHHHHHHHhCC----C-CCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh---C-C
Q 019145 197 RIIEPLASRCAKFRFKPLSE-EVMSSRVLHICNEEGL----N-LDAEALSTLSSISQGDLRRAITYLQGAARLF---G-S 266 (345)
Q Consensus 197 ~l~~~l~~r~~~i~~~~~~~-~~~~~~l~~~~~~~~~----~-i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~---~-~ 266 (345)
..++.+.+|+..+.+++... ++...++..+-..--+ . -+++....|.+.|+|.+..+.+.+..++..+ | +
T Consensus 196 ~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll~~aA~~AI~sG~E 275 (302)
T PF05621_consen 196 RTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLLNAAAIAAIRSGEE 275 (302)
T ss_pred ccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhcCCc
Confidence 35789999999888888754 4555555544432111 1 3567789999999999999999998888766 3 4
Q ss_pred CCCHHHHHHh
Q 019145 267 SITSKDLISV 276 (345)
Q Consensus 267 ~it~~~v~~~ 276 (345)
.||.+.+...
T Consensus 276 ~It~~~l~~~ 285 (302)
T PF05621_consen 276 RITREILDKI 285 (302)
T ss_pred eecHHHHhhC
Confidence 5888887664
No 222
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=4.4e-11 Score=116.74 Aligned_cols=193 Identities=20% Similarity=0.129 Sum_probs=136.1
Q ss_pred CCCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 56 RPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
+-..|+++-|....+..+++.+-. ..+..+||+||||||||..|++++..+-. ......|+.-.+.
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~-~~~kisffmrkga 338 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSR-GNRKISFFMRKGA 338 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcc-cccccchhhhcCc
Confidence 344788888899999888887632 12334999999999999999999998732 2222223222222
Q ss_pred Ccc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH-----------HHHHHHHHHHhhcCC-
Q 019145 123 DDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTMETYSK- 184 (345)
Q Consensus 123 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~-----------~~~~~l~~~le~~~~- 184 (345)
+.. ....++-.+..+.. ..+.|+++||++.+.+ .....|+.+|+..+.
T Consensus 339 D~lskwvgEaERqlrllFeeA~k--------------~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsR 404 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQK--------------TQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSR 404 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhc--------------cCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCC
Confidence 211 11223333333222 2456999999998742 234567788876553
Q ss_pred -ceEEEEecCcccccchhhhccce---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 019145 185 -VTRFFFICNYISRIIEPLASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260 (345)
Q Consensus 185 -~~~ii~~~n~~~~l~~~l~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~ 260 (345)
.+++|-+||.++.+++++++... .++|+-|+.+...+++.-.-.++.-.+....+..+++.+.|..+.-+..|+..
T Consensus 405 gqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTe 484 (1080)
T KOG0732|consen 405 GQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTE 484 (1080)
T ss_pred CceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHH
Confidence 45566678999999999987543 78999999999999998877777778999999999999988888877777666
Q ss_pred HHH
Q 019145 261 ARL 263 (345)
Q Consensus 261 ~~~ 263 (345)
+..
T Consensus 485 Aal 487 (1080)
T KOG0732|consen 485 AAL 487 (1080)
T ss_pred Hhh
Confidence 544
No 223
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.33 E-value=6.7e-11 Score=105.76 Aligned_cols=107 Identities=21% Similarity=0.281 Sum_probs=76.5
Q ss_pred CeEEEEEcCCCCCCH------------HHHHHHHHHHhhcC----------CceEEEEec----Ccccccchhhhccce-
Q 019145 155 PYKIIILDEADSMTE------------DAQNALRRTMETYS----------KVTRFFFIC----NYISRIIEPLASRCA- 207 (345)
Q Consensus 155 ~~~iliiDE~~~l~~------------~~~~~l~~~le~~~----------~~~~ii~~~----n~~~~l~~~l~~r~~- 207 (345)
..+||||||+|++.. .+|..|++++|... .+..||+.+ ..+..+.|.+..|+.
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 328 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPI 328 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 568999999999842 37889999998522 233444443 345568899999998
Q ss_pred eEEecCCCHHHHHHHHHH-----------HHHHhCCC--CCHHHHHHHHHhc--------CCCHHHHHHHHHHHH
Q 019145 208 KFRFKPLSEEVMSSRVLH-----------ICNEEGLN--LDAEALSTLSSIS--------QGDLRRAITYLQGAA 261 (345)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~-----------~~~~~~~~--i~~~~~~~l~~~s--------~g~~r~~~~~l~~~~ 261 (345)
++.+.+++.+++..+|.. .++.+|+. +++++++.|++.+ +--.|.+-..++++.
T Consensus 329 ~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L 403 (443)
T PRK05201 329 RVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLL 403 (443)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 789999999999988833 23345654 7999999998764 333566666666554
No 224
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=99.33 E-value=4.4e-13 Score=108.48 Aligned_cols=138 Identities=22% Similarity=0.275 Sum_probs=62.5
Q ss_pred HHhhhccccccCcchhhhhhCCCCCccccc-cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCC
Q 019145 36 EVKRKMAPVLQSSQPWVEKYRPKQVKDVAH-QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKS 114 (345)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g-~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~ 114 (345)
+++++++ .+.+|....+.-..|..--+ .+..+..+...-......+++|+||+|||||++|.++++++.. . +.
T Consensus 3 ~~~~~l~---~a~lp~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~-~--g~ 76 (178)
T PF01695_consen 3 RIERRLK---QAGLPPDATLENFDFSNERGIDKAQIAQLAALEFIENGENLILYGPPGTGKTHLAVAIANEAIR-K--GY 76 (178)
T ss_dssp ----------------------------------HHHHHHHH-S-SC--EEEEEESTTSSHHHHHHHHHHHHHH-T--T-
T ss_pred ccccccc---ccccccccccccccccchhhHHHHHHHHHhcCCCcccCeEEEEEhhHhHHHHHHHHHHHHHhcc-C--Cc
Confidence 3444444 56666333444444432222 3444455544333345568999999999999999999998843 2 22
Q ss_pred ceeeeecCCc-------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC--HHHHHHHHHHHhhcCCc
Q 019145 115 RVLELNASDD-------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALRRTMETYSKV 185 (345)
Q Consensus 115 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~--~~~~~~l~~~le~~~~~ 185 (345)
.+..++..+- .........+..+ .+.++|||||+.... ....+.|+++++.+..+
T Consensus 77 ~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l----------------~~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~ 140 (178)
T PF01695_consen 77 SVLFITASDLLDELKQSRSDGSYEELLKRL----------------KRVDLLILDDLGYEPLSEWEAELLFEIIDERYER 140 (178)
T ss_dssp -EEEEEHHHHHHHHHCCHCCTTHCHHHHHH----------------HTSSCEEEETCTSS---HHHHHCTHHHHHHHHHT
T ss_pred ceeEeecCceeccccccccccchhhhcCcc----------------ccccEecccccceeeecccccccchhhhhHhhcc
Confidence 3333322110 0000011111111 134699999998764 45667788888877666
Q ss_pred eEEEEecCcc
Q 019145 186 TRFFFICNYI 195 (345)
Q Consensus 186 ~~ii~~~n~~ 195 (345)
..+|++||..
T Consensus 141 ~~tIiTSN~~ 150 (178)
T PF01695_consen 141 KPTIITSNLS 150 (178)
T ss_dssp -EEEEEESS-
T ss_pred cCeEeeCCCc
Confidence 6788899854
No 225
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.32 E-value=1.3e-10 Score=111.08 Aligned_cols=193 Identities=18% Similarity=0.146 Sum_probs=119.6
Q ss_pred cCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcC-CCCCCCCCCCCeE
Q 019145 79 TANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS-GQRRGGYPCPPYK 157 (345)
Q Consensus 79 ~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 157 (345)
.....+++|.|+||||||++++.+++.+.. ..+|+.+.... ..+.+...+.-......+. ...++....+..+
T Consensus 13 ~p~~g~vLl~G~~GtgKs~lar~l~~~~~~----~~pfv~i~~~~--t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~G 86 (589)
T TIGR02031 13 DPSLGGVAIRARAGTGKTALARALAEILPP----IMPFVELPLGV--TEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRG 86 (589)
T ss_pred CCCcceEEEEcCCCcHHHHHHHHHHHhCCc----CCCeEecCccc--chhhcccchhhhhhhhcCcccCCCCCeeeCCCC
Confidence 445678999999999999999999997622 22455555321 1111111110000000000 1112223335667
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHhhcC-------------CceEEEEecCccc---ccchhhhcccee-EEec-CCCHHHH
Q 019145 158 IIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFFICNYIS---RIIEPLASRCAK-FRFK-PLSEEVM 219 (345)
Q Consensus 158 iliiDE~~~l~~~~~~~l~~~le~~~-------------~~~~ii~~~n~~~---~l~~~l~~r~~~-i~~~-~~~~~~~ 219 (345)
+|++||++.++...++.|+..+++.. ..+.+|.++|... .+.+++..|+.. +... +++.++.
T Consensus 87 vL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er 166 (589)
T TIGR02031 87 VLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLR 166 (589)
T ss_pred cEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHH
Confidence 99999999999999999999998643 3466777777654 688999999883 3333 3455554
Q ss_pred HHHHHHHHH-----------------------HhCCCCCHHHHHHHHHhc---CC-CHHHHHHHHHHHHH---HhC-CCC
Q 019145 220 SSRVLHICN-----------------------EEGLNLDAEALSTLSSIS---QG-DLRRAITYLQGAAR---LFG-SSI 268 (345)
Q Consensus 220 ~~~l~~~~~-----------------------~~~~~i~~~~~~~l~~~s---~g-~~r~~~~~l~~~~~---~~~-~~i 268 (345)
.+++..... ...+.++++.++.|++.+ +- .+|..+..+..+.. ..| ..|
T Consensus 167 ~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~gr~~V 246 (589)
T TIGR02031 167 VEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHGRTEV 246 (589)
T ss_pred HHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhCCCCC
Confidence 555544321 124668999988888765 22 36776666654433 334 459
Q ss_pred CHHHHHHhh
Q 019145 269 TSKDLISVS 277 (345)
Q Consensus 269 t~~~v~~~~ 277 (345)
+.+||..++
T Consensus 247 ~~~Dv~~a~ 255 (589)
T TIGR02031 247 TEEDLKLAV 255 (589)
T ss_pred CHHHHHHHH
Confidence 999998775
No 226
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.3e-10 Score=111.27 Aligned_cols=198 Identities=21% Similarity=0.244 Sum_probs=145.9
Q ss_pred hhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCceeeeecCCc--
Q 019145 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNASDD-- 124 (345)
Q Consensus 51 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~----~~~~~~~~~~~~~~-- 124 (345)
+++.-+...++-++|+++.+..+.+.+.....+|-+|+|+||+|||.++..+|......+ +.+..++.++.+.-
T Consensus 160 lt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvA 239 (786)
T COG0542 160 LTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVA 239 (786)
T ss_pred hHHHHhcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhc
Confidence 445556777888999999999999999999999999999999999999999999985322 34555666554321
Q ss_pred ----cc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC---------HHHHHHHHHHHhhcCCceEEE
Q 019145 125 ----RG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT---------EDAQNALRRTMETYSKVTRFF 189 (345)
Q Consensus 125 ----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~---------~~~~~~l~~~le~~~~~~~ii 189 (345)
++ .+.+...++..... +.-|+||||+|.+- -+..|.|...+.. +...+|
T Consensus 240 GakyRGeFEeRlk~vl~ev~~~--------------~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR--GeL~~I 303 (786)
T COG0542 240 GAKYRGEFEERLKAVLKEVEKS--------------KNVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR--GELRCI 303 (786)
T ss_pred cccccCcHHHHHHHHHHHHhcC--------------CCeEEEEechhhhcCCCcccccccchhhhhHHHHhc--CCeEEE
Confidence 11 12233333332221 24699999999872 3466778888876 345566
Q ss_pred EecC-----cccccchhhhccceeEEecCCCHHHHHHHHHHHHH----HhCCCCCHHHHHHHHHhcCC------CHHHHH
Q 019145 190 FICN-----YISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICN----EEGLNLDAEALSTLSSISQG------DLRRAI 254 (345)
Q Consensus 190 ~~~n-----~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~----~~~~~i~~~~~~~l~~~s~g------~~r~~~ 254 (345)
-+|+ ..-.-+++|.+||+.+....|+.++...+|+.... .+++.++++++...+..|.. -+.+++
T Consensus 304 GATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAI 383 (786)
T COG0542 304 GATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAI 383 (786)
T ss_pred EeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHH
Confidence 5553 22345789999999999999999999999988655 36788999999999988743 467799
Q ss_pred HHHHHHHHHh
Q 019145 255 TYLQGAARLF 264 (345)
Q Consensus 255 ~~l~~~~~~~ 264 (345)
..++.+++..
T Consensus 384 DLiDeA~a~~ 393 (786)
T COG0542 384 DLLDEAGARV 393 (786)
T ss_pred HHHHHHHHHH
Confidence 9998887654
No 227
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.30 E-value=1e-10 Score=110.40 Aligned_cols=166 Identities=16% Similarity=0.176 Sum_probs=100.5
Q ss_pred hhhCCCCCccccccHHHHHHHHHHHHcCCC------------CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeee
Q 019145 53 EKYRPKQVKDVAHQEEVVRVLTNTLETANC------------PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (345)
Q Consensus 53 ~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~------------~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 120 (345)
++..-.-...+.|++.++..+.-.+..+.. .|+||+|+||||||++++.+++..... .+....
T Consensus 195 ~~l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~-----~~~~~~ 269 (509)
T smart00350 195 ERLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA-----VYTTGK 269 (509)
T ss_pred HHHHHhhCccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc-----eEcCCC
Confidence 333333334678998888888777766532 169999999999999999999875211 111100
Q ss_pred cCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-------------CceE
Q 019145 121 ASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTR 187 (345)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-------------~~~~ 187 (345)
..+..+... ..+... .........+....+..++++|||++.++...+..|++.|++.. ..+.
T Consensus 270 ~~~~~~l~~--~~~~~~--~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~ 345 (509)
T smart00350 270 GSSAVGLTA--AVTRDP--ETREFTLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCS 345 (509)
T ss_pred CCCcCCccc--cceEcc--CcceEEecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcE
Confidence 011101000 000000 00000011222334566799999999999999999999997532 4567
Q ss_pred EEEecCccc-------------ccchhhhcccee--EEecCCCHHHHHHHHHHHH
Q 019145 188 FFFICNYIS-------------RIIEPLASRCAK--FRFKPLSEEVMSSRVLHIC 227 (345)
Q Consensus 188 ii~~~n~~~-------------~l~~~l~~r~~~--i~~~~~~~~~~~~~l~~~~ 227 (345)
+|.++|+.. .+++++.+||+. +...+++.+.-..++.++.
T Consensus 346 viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 346 VLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred EEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHH
Confidence 888887642 488999999973 3445566655555555543
No 228
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.30 E-value=3.2e-10 Score=108.18 Aligned_cols=125 Identities=16% Similarity=0.176 Sum_probs=83.5
Q ss_pred CCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC---------------------CceEEEEecCcc--cccchhhhccce--
Q 019145 153 CPPYKIIILDEADSMTEDAQNALRRTMETYS---------------------KVTRFFFICNYI--SRIIEPLASRCA-- 207 (345)
Q Consensus 153 ~~~~~iliiDE~~~l~~~~~~~l~~~le~~~---------------------~~~~ii~~~n~~--~~l~~~l~~r~~-- 207 (345)
.++.++|+|||++.++...|..|++.+++.. .++++|+++|.. ..+.+.+.+|+.
T Consensus 224 kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL~~rfk~~ 303 (637)
T PRK13765 224 KAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPALRSRIKGY 303 (637)
T ss_pred ECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHHHHHhccC
Confidence 3456899999999999999999999996432 245678888764 446788888875
Q ss_pred --eEEecC---CCHHHHHHHHHHHHHH---h--CCCCCHHHHHHHHHhc---CCC-------HHHHHHHHHHHHHHh---
Q 019145 208 --KFRFKP---LSEEVMSSRVLHICNE---E--GLNLDAEALSTLSSIS---QGD-------LRRAITYLQGAARLF--- 264 (345)
Q Consensus 208 --~i~~~~---~~~~~~~~~l~~~~~~---~--~~~i~~~~~~~l~~~s---~g~-------~r~~~~~l~~~~~~~--- 264 (345)
.+.|.. -+.+....+++..++. + -..++++++..|++++ .|+ .|.+.+.+..+...+
T Consensus 304 ~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~ 383 (637)
T PRK13765 304 GYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGDIARSE 383 (637)
T ss_pred eEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHHHhh
Confidence 345543 2355666666554433 2 2368999999998754 232 666666666554443
Q ss_pred C-CCCCHHHHHHhh
Q 019145 265 G-SSITSKDLISVS 277 (345)
Q Consensus 265 ~-~~it~~~v~~~~ 277 (345)
+ ..|+.++|.++.
T Consensus 384 ~~~~i~~~~v~~a~ 397 (637)
T PRK13765 384 GAELTTAEHVLEAK 397 (637)
T ss_pred ccceecHHHHHHHH
Confidence 2 347778876664
No 229
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.30 E-value=7.9e-12 Score=100.02 Aligned_cols=129 Identities=17% Similarity=0.186 Sum_probs=78.8
Q ss_pred ccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHh
Q 019145 63 VAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140 (345)
Q Consensus 63 ~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (345)
++|....++.+.+.++. ....+++|+|++||||+.+|+++.+.- ...+.+|+.++|... +.+.+...+-.....
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s---~r~~~pfi~vnc~~~-~~~~~e~~LFG~~~~ 76 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS---PRKNGPFISVNCAAL-PEELLESELFGHEKG 76 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS---TTTTS-EEEEETTTS--HHHHHHHHHEBCSS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh---hcccCCeEEEehhhh-hcchhhhhhhccccc
Confidence 46777777777666654 334569999999999999999998843 334679999999874 322222211110000
Q ss_pred h-hcC-CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc-----------CCceEEEEecCcc
Q 019145 141 A-VGS-GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-----------SKVTRFFFICNYI 195 (345)
Q Consensus 141 ~-~~~-~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~-----------~~~~~ii~~~n~~ 195 (345)
. .+. ....+....+..+.|+|||++.|+...|..|++++++. +.++++|++|+..
T Consensus 77 ~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 77 AFTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp SSTTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred cccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 0 000 00111112346679999999999999999999999853 2367888888643
No 230
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.29 E-value=1.7e-09 Score=93.24 Aligned_cols=210 Identities=18% Similarity=0.199 Sum_probs=139.3
Q ss_pred CCCCccccccHHHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHH
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI 134 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (345)
-..|+.+++....++.+....+.-. -..+||.|++||||..+|+++...- ...+.+|+.+||..- +.+...+.+
T Consensus 200 ~~~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S---~R~~~pFlalNCA~l-Pe~~aEsEl 275 (511)
T COG3283 200 VSGFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLAS---PRHSKPFLALNCASL-PEDAAESEL 275 (511)
T ss_pred ccchHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcC---cccCCCeeEeecCCC-chhHhHHHH
Confidence 3467788887777666655443321 1249999999999999999987653 344678999999763 222222211
Q ss_pred HHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCcc-------c
Q 019145 135 KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------S 196 (345)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~-------~ 196 (345)
....++..-+.+-.-.+..+-+++||+..+++..|..|++++.+.. -++++|++|..+ .
T Consensus 276 ---FG~apg~~gk~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g 352 (511)
T COG3283 276 ---FGHAPGDEGKKGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQKG 352 (511)
T ss_pred ---hcCCCCCCCccchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHHhcC
Confidence 1111211112233335667899999999999999999999998543 357788877432 2
Q ss_pred ccchhhhccceeEEecCCCH----HH----HHHHHHHHHHHhCCC---CCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHh
Q 019145 197 RIIEPLASRCAKFRFKPLSE----EV----MSSRVLHICNEEGLN---LDAEALSTLSSIS-QGDLRRAITYLQGAARLF 264 (345)
Q Consensus 197 ~l~~~l~~r~~~i~~~~~~~----~~----~~~~l~~~~~~~~~~---i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~ 264 (345)
++-..+..|..++.+.-|+- ++ ...++++.+.+.|+. ++++.+..+.++- .||+|.+.|.+-.++...
T Consensus 353 ~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 353 KFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALTLL 432 (511)
T ss_pred chHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHHHHHHHHHHh
Confidence 34566677777554443332 22 345667777777765 7899999998874 899999999997666554
Q ss_pred -CCCCCHHHH
Q 019145 265 -GSSITSKDL 273 (345)
Q Consensus 265 -~~~it~~~v 273 (345)
+..++.+++
T Consensus 433 Eg~~l~i~~i 442 (511)
T COG3283 433 EGYELRIEDI 442 (511)
T ss_pred ccCccchhhc
Confidence 555666655
No 231
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=8.9e-10 Score=102.59 Aligned_cols=191 Identities=15% Similarity=0.158 Sum_probs=123.7
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC--ccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEE
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD--DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKII 159 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 159 (345)
.++++|+||+|+|||.+++++++++..+.. ..+..++|+. ....+.+...+.......... .+.+|
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~--~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~----------~PSiI 498 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLI--AHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWY----------APSII 498 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccc--eEEEEEechhccchhHHHHHHHHHHHHHHHHhh----------CCcEE
Confidence 456999999999999999999999853322 2333345543 334444555555544443332 23599
Q ss_pred EEcCCCCCCH--------------HHHHHHHHHHhhc---CCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHH
Q 019145 160 ILDEADSMTE--------------DAQNALRRTMETY---SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVM 219 (345)
Q Consensus 160 iiDE~~~l~~--------------~~~~~l~~~le~~---~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~ 219 (345)
++|++|.+.. .....|.+++..+ .....+|++++....+.+.|.+ +++ ++.+++|...+.
T Consensus 499 vLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R 578 (952)
T KOG0735|consen 499 VLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRR 578 (952)
T ss_pred EEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHH
Confidence 9999998842 1122333444432 3345677777777777777766 344 789999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhcCCC-HHHHHHHHHHHHHHh--------CCCCCHHHHHHhhCCCCHHH
Q 019145 220 SSRVLHICNEEGLNLDAEALSTLSSISQGD-LRRAITYLQGAARLF--------GSSITSKDLISVSGVIPPEV 284 (345)
Q Consensus 220 ~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~-~r~~~~~l~~~~~~~--------~~~it~~~v~~~~~~~~~~~ 284 (345)
.++|...+.+.......+.++.++..++|. .+++.-..+++...+ .+-+|.++..+.+....+..
T Consensus 579 ~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P~a 652 (952)
T KOG0735|consen 579 KEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLA 652 (952)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcChHH
Confidence 999999998877777788888899888774 444444444443222 12367777776665544433
No 232
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=99.25 E-value=3.8e-12 Score=108.81 Aligned_cols=170 Identities=15% Similarity=0.248 Sum_probs=93.5
Q ss_pred cCCCC-CCCCccccCCc--cccCCCCchHHHhhhccccccCcchhhhhhCCCCCcccc-ccHHHHHHHH---HHHHcCCC
Q 019145 10 KSGKN-KSPNFTQKFST--TQSSPEKSEDEVKRKMAPVLQSSQPWVEKYRPKQVKDVA-HQEEVVRVLT---NTLETANC 82 (345)
Q Consensus 10 ~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-g~~~~~~~l~---~~l~~~~~ 82 (345)
.++.. +.+.+.+.+.. ..+...+..+...+++. ..++|....+.-..|+.-. ++..++..+. .++. ..
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~a~~p~~k~~~~~d~~~~~~~~~~~l~~~~~~~~~~~--~~ 105 (254)
T COG1484 31 EQAADCKEWGYAEFLEYLLEEEKLAREARKIERRLR---SASFPAKKTFEEFDFEFQPGIDKKALEDLASLVEFFE--RG 105 (254)
T ss_pred HhHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcCCccCCcccccccCCcchhHHHHHHHHHHHHHhc--cC
Confidence 33334 55655555443 22333445555555555 6777766333333333222 2344444433 3444 55
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHH-HHHhhhcCCCCCCCCCCCCeEEEEE
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKT-FAAVAVGSGQRRGGYPCPPYKIIIL 161 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ilii 161 (345)
.+++|+||||||||++|.++++++. .. +..+..++.++ -...+...... ....... ....+.++|||
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~-~~--g~sv~f~~~~e--l~~~Lk~~~~~~~~~~~l~-------~~l~~~dlLIi 173 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELL-KA--GISVLFITAPD--LLSKLKAAFDEGRLEEKLL-------RELKKVDLLII 173 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH-Hc--CCeEEEEEHHH--HHHHHHHHHhcCchHHHHH-------HHhhcCCEEEE
Confidence 6899999999999999999999995 33 23333333322 11111111110 0000000 01235679999
Q ss_pred cCCCCC--CHHHHHHHHHHHhhcCCceEEEEecCccc
Q 019145 162 DEADSM--TEDAQNALRRTMETYSKVTRFFFICNYIS 196 (345)
Q Consensus 162 DE~~~l--~~~~~~~l~~~le~~~~~~~ii~~~n~~~ 196 (345)
||+... ++...+.+++++.........++++|.+.
T Consensus 174 DDlG~~~~~~~~~~~~~q~I~~r~~~~~~~~tsN~~~ 210 (254)
T COG1484 174 DDIGYEPFSQEEADLLFQLISRRYESRSLIITSNLSF 210 (254)
T ss_pred ecccCccCCHHHHHHHHHHHHHHHhhccceeecCCCh
Confidence 999985 45567788888887665555588887653
No 233
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.25 E-value=8.6e-11 Score=106.27 Aligned_cols=154 Identities=18% Similarity=0.221 Sum_probs=95.8
Q ss_pred CccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC-CCCCceeeeecCCc------------cc
Q 019145 60 VKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE-LYKSRVLELNASDD------------RG 126 (345)
Q Consensus 60 ~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~-~~~~~~~~~~~~~~------------~~ 126 (345)
++++++.+.....+...+..+ .+++|+||||||||++|+.+++.+.+.. ......+.+..... .+
T Consensus 174 l~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vg 251 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVG 251 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCC
Confidence 567777888888888888754 4799999999999999999999885421 11222333322110 00
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHH-HHHHHHHHHhh----------------------cC
Q 019145 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED-AQNALRRTMET----------------------YS 183 (345)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~-~~~~l~~~le~----------------------~~ 183 (345)
.......+..+...+.. ......+|||||++....+ ....++.++|. .|
T Consensus 252 y~~~~G~f~~~~~~A~~--------~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP 323 (459)
T PRK11331 252 FRRKDGIFYNFCQQAKE--------QPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVP 323 (459)
T ss_pred eEecCchHHHHHHHHHh--------cccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCC
Confidence 00000011111111100 0123469999999998754 45666666652 13
Q ss_pred CceEEEEecCccc----ccchhhhccceeEEecC-CCHHHHHHHH
Q 019145 184 KVTRFFFICNYIS----RIIEPLASRCAKFRFKP-LSEEVMSSRV 223 (345)
Q Consensus 184 ~~~~ii~~~n~~~----~l~~~l~~r~~~i~~~~-~~~~~~~~~l 223 (345)
.++.+|.|.|..+ .++.++++|+..+++.| ++...+.+++
T Consensus 324 ~Nl~IIgTMNt~Drs~~~lD~AlrRRF~fi~i~p~~~~~~~~~~l 368 (459)
T PRK11331 324 ENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTPQFRNFL 368 (459)
T ss_pred CCeEEEEecCccccchhhccHHHHhhhheEEecCCCChHHHHHHH
Confidence 4677888888766 58899999999998887 4555566665
No 234
>PRK12377 putative replication protein; Provisional
Probab=99.23 E-value=6.1e-11 Score=100.55 Aligned_cols=133 Identities=17% Similarity=0.225 Sum_probs=77.4
Q ss_pred hhhhCCCCCccccc----cHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc
Q 019145 52 VEKYRPKQVKDVAH----QEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (345)
Q Consensus 52 ~~~~~p~~~~~~~g----~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (345)
.+.+...+|+.+.. +..++......... ....+++|+|||||||||++.++++.+... +..++.++..+
T Consensus 65 ~~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~---g~~v~~i~~~~-- 139 (248)
T PRK12377 65 QPLHRKCSFANYQVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAK---GRSVIVVTVPD-- 139 (248)
T ss_pred CcccccCCcCCcccCChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCCeEEEEHHH--
Confidence 35677778888763 33344433333322 233579999999999999999999998432 22333333221
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCC--CCCHHHHHHHHHHHhhcCC-ceEEEEecCcc
Q 019145 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD--SMTEDAQNALRRTMETYSK-VTRFFFICNYI 195 (345)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~--~l~~~~~~~l~~~le~~~~-~~~ii~~~n~~ 195 (345)
-...+......-.... .........++|||||++ ..++..++.|+.+++.+.. ..++|++||..
T Consensus 140 l~~~l~~~~~~~~~~~------~~l~~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~ 206 (248)
T PRK12377 140 VMSRLHESYDNGQSGE------KFLQELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLN 206 (248)
T ss_pred HHHHHHHHHhccchHH------HHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 1111111100000000 000011355799999995 4567788899999998765 46788898854
No 235
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.22 E-value=2.7e-09 Score=99.87 Aligned_cols=210 Identities=18% Similarity=0.202 Sum_probs=132.9
Q ss_pred cccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHH
Q 019145 62 DVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (345)
.++|....+..+...+.. .....++++|++||||+++++++.... .....+|+.++|.... ...+...+.....
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s---~~~~~~~i~~~c~~~~-~~~~~~~lfg~~~ 215 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASS---ARSEKPLVTLNCAALN-ESLLESELFGHEK 215 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcC---CCCCCCeeeeeCCCCC-HHHHHHHhcCCCC
Confidence 355655555444433322 233458999999999999999998764 2235689999998642 2322222211100
Q ss_pred hhhcC--CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCccc-------ccc
Q 019145 140 VAVGS--GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-------RII 199 (345)
Q Consensus 140 ~~~~~--~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~~-------~l~ 199 (345)
..... ....+....+..+.|+|||++.++...+..|+.++++.. .++++|++++... .+.
T Consensus 216 ~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~ 295 (441)
T PRK10365 216 GAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFR 295 (441)
T ss_pred CCcCCCCcCCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCch
Confidence 00000 011122234566799999999999999999999998642 2456777775432 244
Q ss_pred hhhhccce--eEEecCCCH--HHHHHHHHHHHHH----hC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHh-CC
Q 019145 200 EPLASRCA--KFRFKPLSE--EVMSSRVLHICNE----EG---LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF-GS 266 (345)
Q Consensus 200 ~~l~~r~~--~i~~~~~~~--~~~~~~l~~~~~~----~~---~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~-~~ 266 (345)
+.+..++. .+.++|+.. +++..++..++.+ .+ ..+++++++.|..+. .||+|.+.+.++.++..+ +.
T Consensus 296 ~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~~~~ 375 (441)
T PRK10365 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGE 375 (441)
T ss_pred HHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 55555655 455555543 3555555554432 23 348999999999987 899999999999988665 45
Q ss_pred CCCHHHHHH
Q 019145 267 SITSKDLIS 275 (345)
Q Consensus 267 ~it~~~v~~ 275 (345)
.|+.+++..
T Consensus 376 ~i~~~~l~~ 384 (441)
T PRK10365 376 YISERELPL 384 (441)
T ss_pred ccchHhCch
Confidence 688777653
No 236
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.22 E-value=1.4e-11 Score=91.68 Aligned_cols=111 Identities=25% Similarity=0.240 Sum_probs=59.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCC--CCCCCCCCCeEEEEE
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIIL 161 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ilii 161 (345)
|+||+|+||+|||++++++|+.+ +..|..+.+.......++... .-.....+. ...++.. ..++++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~------~~~f~RIq~tpdllPsDi~G~----~v~~~~~~~f~~~~GPif--~~ill~ 68 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL------GLSFKRIQFTPDLLPSDILGF----PVYDQETGEFEFRPGPIF--TNILLA 68 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT------T--EEEEE--TT--HHHHHEE----EEEETTTTEEEEEE-TT---SSEEEE
T ss_pred CEeeECCCccHHHHHHHHHHHHc------CCceeEEEecCCCCcccceee----eeeccCCCeeEeecChhh--hceeee
Confidence 58999999999999999999998 566666665432222222111 000000000 0001111 249999
Q ss_pred cCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCccc-----ccchhhhccc
Q 019145 162 DEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYIS-----RIIEPLASRC 206 (345)
Q Consensus 162 DE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~~-----~l~~~l~~r~ 206 (345)
||++..++..|.+|++.+++.. ....+|.+.|+.+ .++.++.+|+
T Consensus 69 DEiNrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 69 DEINRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp ETGGGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred cccccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 9999999999999999998643 2344555667643 4677777775
No 237
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.20 E-value=1.1e-11 Score=99.57 Aligned_cols=106 Identities=24% Similarity=0.316 Sum_probs=69.9
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEc
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiD 162 (345)
.+++|+||+|||||.+|+++++.+.. ....+++.++++.....+.....+......+.... ......||++|
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~--~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v------~~~~~gVVllD 75 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFV--GSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYV------GAEEGGVVLLD 75 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT---SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHH------HHHHHTEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc--CCccchHHHhhhcccccchHHhhhhhhhhccccee------eccchhhhhhH
Confidence 46899999999999999999999941 12457888888765442222222222211111000 00122399999
Q ss_pred CCCCCCH-----------HHHHHHHHHHhhcC-----------CceEEEEecCccc
Q 019145 163 EADSMTE-----------DAQNALRRTMETYS-----------KVTRFFFICNYIS 196 (345)
Q Consensus 163 E~~~l~~-----------~~~~~l~~~le~~~-----------~~~~ii~~~n~~~ 196 (345)
|+|+..+ .+++.|++++++.. .++.||+++|-..
T Consensus 76 EidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 76 EIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp TGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred HHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 9999999 99999999998532 4567888886543
No 238
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=99.19 E-value=1.2e-09 Score=90.28 Aligned_cols=217 Identities=19% Similarity=0.191 Sum_probs=137.2
Q ss_pred hhccccccCcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceee
Q 019145 39 RKMAPVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE 118 (345)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~ 118 (345)
+-++....+..|+....+|..+-...-+.+.+..+...+..+. ..+.++|+.|+|||.+.+++...+... ....+.
T Consensus 9 ~~l~~~g~~~~pf~~~~~~~~~~~~a~h~e~l~~l~~~i~d~q-g~~~vtGevGsGKTv~~Ral~~s~~~d---~~~~v~ 84 (269)
T COG3267 9 MLLNHFGFSRLPFSWDIQPGLDYWAADHNEALLMLHAAIADGQ-GILAVTGEVGSGKTVLRRALLASLNED---QVAVVV 84 (269)
T ss_pred HHHHHhhhccCCCccchhhhhhhhhhhhhHHHHHHHHHHhcCC-ceEEEEecCCCchhHHHHHHHHhcCCC---ceEEEE
Confidence 3444444666677776666666556567888888888887765 247999999999999999777776322 112233
Q ss_pred eecCCccchHHHHHHHHHHHHhhhcCCCC----------CCCCCCCCe-EEEEEcCCCCCCHHHHHHHHHHHh---hcCC
Q 019145 119 LNASDDRGINVVRTKIKTFAAVAVGSGQR----------RGGYPCPPY-KIIILDEADSMTEDAQNALRRTME---TYSK 184 (345)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~-~iliiDE~~~l~~~~~~~l~~~le---~~~~ 184 (345)
++.............+..+.. .+..... ......+++ .++++||++.+..+..+.+..+.+ +...
T Consensus 85 i~~~~~s~~~~~~ai~~~l~~-~p~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~ 163 (269)
T COG3267 85 IDKPTLSDATLLEAIVADLES-QPKVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSK 163 (269)
T ss_pred ecCcchhHHHHHHHHHHHhcc-CccchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccC
Confidence 444332111111111111111 0000000 000011233 699999999999888887765554 4445
Q ss_pred ceEEEEecCcc------cccchhhhcccee-EEecCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHhcCCCHHHHH
Q 019145 185 VTRFFFICNYI------SRIIEPLASRCAK-FRFKPLSEEVMSSRVLHICNEEGLN---LDAEALSTLSSISQGDLRRAI 254 (345)
Q Consensus 185 ~~~ii~~~n~~------~~l~~~l~~r~~~-i~~~~~~~~~~~~~l~~~~~~~~~~---i~~~~~~~l~~~s~g~~r~~~ 254 (345)
...+++++-+. ......+..|+.+ +..+|++.++...+|+.+++..+.+ ++++++..+...+.|-+|. +
T Consensus 164 ~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~l-i 242 (269)
T COG3267 164 LLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRL-I 242 (269)
T ss_pred ceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHH-H
Confidence 55677776322 1123456678887 9999999999999999999877654 7899999999999996665 5
Q ss_pred HHHHHHH
Q 019145 255 TYLQGAA 261 (345)
Q Consensus 255 ~~l~~~~ 261 (345)
|.+...|
T Consensus 243 n~~~~~A 249 (269)
T COG3267 243 NNLATLA 249 (269)
T ss_pred HHHHHHH
Confidence 5554444
No 239
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=99.17 E-value=8.3e-11 Score=95.31 Aligned_cols=163 Identities=16% Similarity=0.215 Sum_probs=113.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~ 164 (345)
.+|+|+.-.-+...++.+.+.+........++..+++.+.. .. ..+..+. ..+..++.++|+|.++
T Consensus 1 Yll~G~d~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~---~l~~~~~----------s~slF~~~klvii~~~ 66 (172)
T PF06144_consen 1 YLLYGEDSFLIEEYIKKIRKALIKKDFDDFNVIVFDGSEDD-ID---ELLEELQ----------SPSLFGDKKLVIIKNA 66 (172)
T ss_dssp EEEEES-HHHHHHHHHHHHHHHHTTTEEEEEEEE-STTS-H-HH----HTTTST----------TTTSSSSEEEEEEE--
T ss_pred CEEEeCcHHHHHHHHHHHHHHhhcCCCccceEEEEccccCc-HH---HHHHHHh----------cCCccCCCeEEEEecC
Confidence 37888888888888899988865555555566666655421 11 1111111 1134567899999998
Q ss_pred ----CCCCHHHHHHHHHHHhhcCCceEEEEecC-cc---cccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCH
Q 019145 165 ----DSMTEDAQNALRRTMETYSKVTRFFFICN-YI---SRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDA 236 (345)
Q Consensus 165 ----~~l~~~~~~~l~~~le~~~~~~~ii~~~n-~~---~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~ 236 (345)
+....+..+.|..++.++++++.+|+.++ .. .++.+.+.+.+.++.|.+++..++..|++.++++.|+.+++
T Consensus 67 ~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~ 146 (172)
T PF06144_consen 67 PFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKERAKKNGLKIDP 146 (172)
T ss_dssp ---TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHHHHTT-EE-H
T ss_pred ccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 45666788999999999888888888776 33 34667777888899999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHH
Q 019145 237 EALSTLSSISQGDLRRAITYLQGAA 261 (345)
Q Consensus 237 ~~~~~l~~~s~g~~r~~~~~l~~~~ 261 (345)
++++.+++.+++|++.+.+++++++
T Consensus 147 ~a~~~L~~~~~~d~~~l~~EleKL~ 171 (172)
T PF06144_consen 147 DAAQYLIERVGNDLSLLQNELEKLS 171 (172)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 9999999999999999999999986
No 240
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.16 E-value=1.3e-09 Score=106.11 Aligned_cols=147 Identities=18% Similarity=0.136 Sum_probs=90.9
Q ss_pred ccccccHHHHHHHHHHHHcCCC---------------------CcEEEeCCCCCCHHHHHHHHHHHhcCCC-CCCCceee
Q 019145 61 KDVAHQEEVVRVLTNTLETANC---------------------PHMLFYGPPGTGKTTTALAIAHQLFGPE-LYKSRVLE 118 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~~---------------------~~lll~G~~G~GKT~la~~la~~l~~~~-~~~~~~~~ 118 (345)
..+.|++.++..+.-.+..|.. .|+||+|+||||||.+++.+++...... ..+..+..
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~ 529 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSS 529 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcc
Confidence 4678999999888777755431 1699999999999999999988541110 00111221
Q ss_pred eecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-------------Cc
Q 019145 119 LNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KV 185 (345)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-------------~~ 185 (345)
+.+... ...............+....+..++++|||++.++...+..|++.|++.. ..
T Consensus 530 vgLTa~---------~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar 600 (915)
T PTZ00111 530 VGLTAS---------IKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAE 600 (915)
T ss_pred ccccch---------hhhcccccCcccccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCC
Confidence 111110 00000000000111222334567899999999999999999999998642 46
Q ss_pred eEEEEecCccc-------------ccchhhhccceeE--EecCCCH
Q 019145 186 TRFFFICNYIS-------------RIIEPLASRCAKF--RFKPLSE 216 (345)
Q Consensus 186 ~~ii~~~n~~~-------------~l~~~l~~r~~~i--~~~~~~~ 216 (345)
+.+|.++|+.. .+++++++||+.+ ....++.
T Consensus 601 ~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~ 646 (915)
T PTZ00111 601 TAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQ 646 (915)
T ss_pred eEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCCh
Confidence 77888887632 3678999999732 3344443
No 241
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.15 E-value=4.3e-09 Score=93.31 Aligned_cols=170 Identities=14% Similarity=0.020 Sum_probs=103.7
Q ss_pred CCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeee------------------
Q 019145 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL------------------ 119 (345)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~------------------ 119 (345)
..|..++|++.....|.-..-......+||.|+.||||||++++++.-+-.-......-+.+
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e 93 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDE 93 (423)
T ss_pred cchhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccc
Confidence 35667899999988876665556667799999999999999999999872110000000000
Q ss_pred --------------ecCCccchHHHHHHHHHHHHh-hhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc--
Q 019145 120 --------------NASDDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-- 182 (345)
Q Consensus 120 --------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~-- 182 (345)
+.+...+.+.+-..+.-.... .......++....++++|++|||+..|+...++.|+..++..
T Consensus 94 ~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG~n 173 (423)
T COG1239 94 LEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEGVN 173 (423)
T ss_pred cccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHHHhCCc
Confidence 001111111000000000000 000111344455678999999999999999999999999863
Q ss_pred -----------CCceEEEEecCcc-cccchhhhccce-eEEecCC-CHHHHHHHHHHHH
Q 019145 183 -----------SKVTRFFFICNYI-SRIIEPLASRCA-KFRFKPL-SEEVMSSRVLHIC 227 (345)
Q Consensus 183 -----------~~~~~ii~~~n~~-~~l~~~l~~r~~-~i~~~~~-~~~~~~~~l~~~~ 227 (345)
+..+.+|.+.|+. ..+.+.|+.||. .+...++ +.++...++.+..
T Consensus 174 ~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~ 232 (423)
T COG1239 174 DVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRL 232 (423)
T ss_pred eeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHH
Confidence 2355566677765 458899999976 5665555 4455555555544
No 242
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.14 E-value=4.1e-09 Score=97.94 Aligned_cols=218 Identities=23% Similarity=0.222 Sum_probs=124.0
Q ss_pred CCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC-------------c
Q 019145 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD-------------D 124 (345)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~-------------~ 124 (345)
.+|.++.|+..++..+.-.+. ...+++|+||+|+|||++++.+...+. .......+++..-. .
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~--~G~~llliG~~GsGKTtLak~L~gllp--p~~g~e~le~~~i~s~~g~~~~~~~~~~ 263 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAA--GGHNLLLIGPPGTGKTMLASRINGLLP--DLSNEEALESAAILSLVNAESVQKQWRQ 263 (506)
T ss_pred cCeEEEECcHHHHhhhheecc--CCcEEEEECCCCCcHHHHHHHHhccCC--CCCCcEEEecchhhhhhccccccCCcCC
Confidence 377888899888877754443 335799999999999999999987662 11111112211100 0
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc-------------CCceEEEEe
Q 019145 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-------------SKVTRFFFI 191 (345)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~-------------~~~~~ii~~ 191 (345)
+.....-...........+....++....+..+++++||++.++...++.|++.+++. +.++.+|.+
T Consensus 264 rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa 343 (506)
T PRK09862 264 RPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAA 343 (506)
T ss_pred CCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEe
Confidence 0000000000001111111112334445667789999999999999999999999753 235677877
Q ss_pred cCccc---------------------ccchhhhccce-eEEecCCCHH-------------HHHHHHHHHHH---H--h-
Q 019145 192 CNYIS---------------------RIIEPLASRCA-KFRFKPLSEE-------------VMSSRVLHICN---E--E- 230 (345)
Q Consensus 192 ~n~~~---------------------~l~~~l~~r~~-~i~~~~~~~~-------------~~~~~l~~~~~---~--~- 230 (345)
+|+.. ++..++++|++ .+.+++++.+ ++++.+....+ . .
T Consensus 344 ~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~ 423 (506)
T PRK09862 344 MNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNK 423 (506)
T ss_pred ecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHH
Confidence 77542 46778999998 4677766432 23322211000 0 0
Q ss_pred -C-----------CCCCHHHHHHHH---HhcCCCHHHHHHHHHHHHHHh---C-CCCCHHHHHHhhCC
Q 019145 231 -G-----------LNLDAEALSTLS---SISQGDLRRAITYLQGAARLF---G-SSITSKDLISVSGV 279 (345)
Q Consensus 231 -~-----------~~i~~~~~~~l~---~~s~g~~r~~~~~l~~~~~~~---~-~~it~~~v~~~~~~ 279 (345)
+ +.++.++.+.+. ...+-..|.....+.-+...+ + ..|+.+||.+++.-
T Consensus 424 ~n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~y 491 (506)
T PRK09862 424 LNAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSY 491 (506)
T ss_pred HhcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 1 223444433332 233445777666665554444 3 55889988888763
No 243
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=9.3e-10 Score=99.28 Aligned_cols=152 Identities=25% Similarity=0.264 Sum_probs=101.0
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC------CccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCe
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS------DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPY 156 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (345)
..+|||||||||||.+|+.+.+-++..+.+- +|++ -..+...++..+..........+ ..+.-
T Consensus 257 KGiLLyGPPGTGKTLiARqIGkMLNArePKI-----VNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g------~~SgL 325 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIARQIGKMLNAREPKI-----VNGPEILNKYVGESEENVRKLFADAEEEQRRLG------ANSGL 325 (744)
T ss_pred eeEEEECCCCCChhHHHHHHHHHhcCCCCcc-----cCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhC------ccCCc
Confidence 3489999999999999999999987654432 2332 23445667777776655533222 12344
Q ss_pred EEEEEcCCCCCC-------------HHHHHHHHHHHhhcC--CceEEEEecCcccccchhhhc--cce-eEEecCCCHHH
Q 019145 157 KIIILDEADSMT-------------EDAQNALRRTMETYS--KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEV 218 (345)
Q Consensus 157 ~iliiDE~~~l~-------------~~~~~~l~~~le~~~--~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~ 218 (345)
.|||+||+|.+- ..+.+.|+.-++... .+..+|-.||..+.++.+|++ |++ .+++.-|++.-
T Consensus 326 HIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~g 405 (744)
T KOG0741|consen 326 HIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKG 405 (744)
T ss_pred eEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccC
Confidence 699999998762 346778887776433 355666678999999999998 444 57788888766
Q ss_pred HHHHHHH---HHHHhCCCCCHHH-HHHHHHhc
Q 019145 219 MSSRVLH---ICNEEGLNLDAEA-LSTLSSIS 246 (345)
Q Consensus 219 ~~~~l~~---~~~~~~~~i~~~~-~~~l~~~s 246 (345)
..++++- +.+..+. +++++ ++.|+..+
T Consensus 406 RlQIl~IHT~rMre~~~-l~~dVdl~elA~lT 436 (744)
T KOG0741|consen 406 RLQILKIHTKRMRENNK-LSADVDLKELAALT 436 (744)
T ss_pred ceEEEEhhhhhhhhcCC-CCCCcCHHHHHHHh
Confidence 6555543 3444443 44433 66776665
No 244
>PRK08116 hypothetical protein; Validated
Probab=99.13 E-value=5.8e-10 Score=96.34 Aligned_cols=156 Identities=19% Similarity=0.221 Sum_probs=87.9
Q ss_pred hhhhCCCCCcccccc---HHHHHHHHHHHHc----C-CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC
Q 019145 52 VEKYRPKQVKDVAHQ---EEVVRVLTNTLET----A-NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (345)
Q Consensus 52 ~~~~~p~~~~~~~g~---~~~~~~l~~~l~~----~-~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (345)
.+++...+|+.+... ..++....+.+.. . ....++|+|++|+||||++.++++++... +..++.++..+
T Consensus 76 ~~~~~~~tFdnf~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~---~~~v~~~~~~~ 152 (268)
T PRK08116 76 DEKFRNSTFENFLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEK---GVPVIFVNFPQ 152 (268)
T ss_pred CHHHHhcchhcccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHH
Confidence 467888889877632 2233333333321 1 22249999999999999999999998432 23444444322
Q ss_pred ccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCC--CCCHHHHHHHHHHHhhcC-CceEEEEecCcccc---
Q 019145 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD--SMTEDAQNALRRTMETYS-KVTRFFFICNYISR--- 197 (345)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~--~l~~~~~~~l~~~le~~~-~~~~ii~~~n~~~~--- 197 (345)
. ...+... +.... ..............++|||||++ ..+...++.|+.+++... ....+|++||....
T Consensus 153 l--l~~i~~~---~~~~~-~~~~~~~~~~l~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 153 L--LNRIKST---YKSSG-KEDENEIIRSLVNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELK 226 (268)
T ss_pred H--HHHHHHH---Hhccc-cccHHHHHHHhcCCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 0 0111110 00000 00000000011244699999994 456677888999998654 34568888875432
Q ss_pred --cchhhhcc----ceeEEecCCCH
Q 019145 198 --IIEPLASR----CAKFRFKPLSE 216 (345)
Q Consensus 198 --l~~~l~~r----~~~i~~~~~~~ 216 (345)
+..++.+| |..+.|..++.
T Consensus 227 ~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 227 NQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred HHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 34556666 55777777663
No 245
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.12 E-value=5.9e-10 Score=86.73 Aligned_cols=125 Identities=18% Similarity=0.220 Sum_probs=78.9
Q ss_pred cccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhh
Q 019145 64 AHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVA 141 (345)
Q Consensus 64 ~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (345)
+|....++.+.+.+.. ....+++|+|++||||+++|+.+++.-.. ....++.+++.... .+.+...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~---~~~~~~~~~~~~~~-----~~~l~~a---- 68 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGR---ANGPFIVIDCASLP-----AELLEQA---- 68 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTT---CCS-CCCCCHHCTC-----HHHHHHC----
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCc---cCCCeEEechhhCc-----HHHHHHc----
Confidence 3555566666665544 33346999999999999999999886421 23344545554422 1222221
Q ss_pred hcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc-CCceEEEEecCcc-------cccchhhhccce--eEEe
Q 019145 142 VGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-SKVTRFFFICNYI-------SRIIEPLASRCA--KFRF 211 (345)
Q Consensus 142 ~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~-~~~~~ii~~~n~~-------~~l~~~l~~r~~--~i~~ 211 (345)
..+.++|+|++.++.+.+..|..+++.. ..++++|++++.. ..+.+.+..++. .+.+
T Consensus 69 -------------~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~~i~l 135 (138)
T PF14532_consen 69 -------------KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQLEIHL 135 (138)
T ss_dssp -------------TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHHHHHCSTCEEEE
T ss_pred -------------CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHHHHHhCCCEEeC
Confidence 2349999999999999999999999864 4678888887533 235566666655 5555
Q ss_pred cC
Q 019145 212 KP 213 (345)
Q Consensus 212 ~~ 213 (345)
+|
T Consensus 136 Pp 137 (138)
T PF14532_consen 136 PP 137 (138)
T ss_dssp --
T ss_pred CC
Confidence 54
No 246
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=8.1e-11 Score=105.56 Aligned_cols=122 Identities=29% Similarity=0.360 Sum_probs=76.9
Q ss_pred CCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeec-----C-Ccc-----
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA-----S-DDR----- 125 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~-----~-~~~----- 125 (345)
..+|.|++||+..++.+.-....++ |++++||||||||.+|+.+..-+ +.......++++. + ...
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAGgH--nLl~~GpPGtGKTmla~Rl~~lL--Ppls~~E~lE~s~I~s~~g~~~~~~~~~ 250 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAGGH--NLLLVGPPGTGKTMLASRLPGLL--PPLSIPEALEVSAIHSLAGDLHEGCPLK 250 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhcCC--cEEEecCCCCchHHhhhhhcccC--CCCChHHHHHHHHHhhhcccccccCccc
Confidence 3489999999999999986665554 89999999999999999987655 2211111111110 0 000
Q ss_pred ---chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc
Q 019145 126 ---GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (345)
Q Consensus 126 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~ 182 (345)
....--...........+....++....+.++|+|+||+..+.....+.|.+=+|+.
T Consensus 251 ~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g 310 (490)
T COG0606 251 IHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENG 310 (490)
T ss_pred eeCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccC
Confidence 000000000111111222333455566778899999999999999999999998863
No 247
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.11 E-value=2.1e-09 Score=94.89 Aligned_cols=94 Identities=10% Similarity=-0.047 Sum_probs=67.7
Q ss_pred CCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCcc-------cccchhhhccceeEEecC
Q 019145 152 PCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------SRIIEPLASRCAKFRFKP 213 (345)
Q Consensus 152 ~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~-------~~l~~~l~~r~~~i~~~~ 213 (345)
..++++++-++|+...+.+.++.|+..+++.. ....||+++|.. .+..+++++||..+.++-
T Consensus 233 ~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~vpY 312 (361)
T smart00763 233 NRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRIIKVKVPY 312 (361)
T ss_pred ccccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceEEEeCCC
Confidence 45677899999999999999999999998532 123456677765 356899999999888755
Q ss_pred C-CHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHh
Q 019145 214 L-SEEVMSSRVLHICNEE---GLNLDAEALSTLSSI 245 (345)
Q Consensus 214 ~-~~~~~~~~l~~~~~~~---~~~i~~~~~~~l~~~ 245 (345)
+ +.++-.++.++.+... +..+.+.+++.++..
T Consensus 313 ~l~~~~E~~Iy~k~~~~s~~~~~~~aP~~le~aa~~ 348 (361)
T smart00763 313 CLRVSEEAQIYEKLLRNSDLTEAHIAPHTLEMAALF 348 (361)
T ss_pred cCCHHHHHHHHHHHhccCcCcccccCchHHHHHHHH
Confidence 4 5566677777766543 455667666665543
No 248
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=4.3e-09 Score=89.47 Aligned_cols=153 Identities=22% Similarity=0.300 Sum_probs=97.4
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc----chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeE
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (345)
..|+||.||+|+|||.+|+.+|+.+ +.+|.--++..-. -.+++...+..+....... ...+.++
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~L------nVPFaiADATtLTEAGYVGEDVENillkLlqaadyd------V~rAerG 164 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKIL------NVPFAIADATTLTEAGYVGEDVENILLKLLQAADYD------VERAERG 164 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHh------CCCeeeccccchhhccccchhHHHHHHHHHHHcccC------HHHHhCC
Confidence 4579999999999999999999999 5666555543211 1233444444443332111 1234667
Q ss_pred EEEEcCCCCCCH--------------HHHHHHHHHHhhc-----C--------------CceEEEEec------------
Q 019145 158 IIILDEADSMTE--------------DAQNALRRTMETY-----S--------------KVTRFFFIC------------ 192 (345)
Q Consensus 158 iliiDE~~~l~~--------------~~~~~l~~~le~~-----~--------------~~~~ii~~~------------ 192 (345)
+|+|||+|.+++ .+|.+|++++|.. | ....++|+|
T Consensus 165 IIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~ 244 (408)
T COG1219 165 IIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIK 244 (408)
T ss_pred eEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHH
Confidence 999999999853 4789999999831 1 011233332
Q ss_pred ------------Ccc----------------------cccchhhhccce-eEEecCCCHHHHHHHHHH-----------H
Q 019145 193 ------------NYI----------------------SRIIEPLASRCA-KFRFKPLSEEVMSSRVLH-----------I 226 (345)
Q Consensus 193 ------------n~~----------------------~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~-----------~ 226 (345)
+.. +.+.|.+..|.. +..+.+++.+.+.++|.. .
T Consensus 245 ~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~L 324 (408)
T COG1219 245 KRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKL 324 (408)
T ss_pred HhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHH
Confidence 000 114566777777 567888999888877653 2
Q ss_pred HHHhCC--CCCHHHHHHHHHhc
Q 019145 227 CNEEGL--NLDAEALSTLSSIS 246 (345)
Q Consensus 227 ~~~~~~--~i~~~~~~~l~~~s 246 (345)
++..++ .++++++..+++..
T Consensus 325 f~~d~V~L~F~~~AL~~IA~~A 346 (408)
T COG1219 325 FEMDGVELEFTEEALKAIAKKA 346 (408)
T ss_pred hcccCceEEEcHHHHHHHHHHH
Confidence 233444 37899999998764
No 249
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.08 E-value=1.2e-09 Score=92.46 Aligned_cols=154 Identities=18% Similarity=0.166 Sum_probs=86.6
Q ss_pred hhhhCCCCCccccc----cHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc
Q 019145 52 VEKYRPKQVKDVAH----QEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (345)
Q Consensus 52 ~~~~~p~~~~~~~g----~~~~~~~l~~~l~~~--~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (345)
.+.+++.+|+++.. +..++..+..+.... ...+++|+|+||||||+++.++++++... +..++.++..+
T Consensus 63 ~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~---g~~v~~it~~~-- 137 (244)
T PRK07952 63 RPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR---GKSVLIITVAD-- 137 (244)
T ss_pred CccccCCccccccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEHHH--
Confidence 46778889998863 334555555555432 22469999999999999999999998432 23333333221
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--HHHHHHHHHHhhcCC-ceEEEEecCcccc-----
Q 019145 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYSK-VTRFFFICNYISR----- 197 (345)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--~~~~~l~~~le~~~~-~~~ii~~~n~~~~----- 197 (345)
+...+....... ..............++|+|||++.... -....|..+++.+.. ...+|++||....
T Consensus 138 ----l~~~l~~~~~~~-~~~~~~~l~~l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~ 212 (244)
T PRK07952 138 ----IMSAMKDTFSNS-ETSEEQLLNDLSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKL 212 (244)
T ss_pred ----HHHHHHHHHhhc-cccHHHHHHHhccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHH
Confidence 111111100000 000000000112457999999987643 345578888887553 5678888885422
Q ss_pred cchhhhccc-----eeEEecCCC
Q 019145 198 IIEPLASRC-----AKFRFKPLS 215 (345)
Q Consensus 198 l~~~l~~r~-----~~i~~~~~~ 215 (345)
+.+.+.+|. ..+.|...+
T Consensus 213 ~g~ri~sRl~~~~~~~i~f~~~s 235 (244)
T PRK07952 213 LGERVMDRMRLGNSLWVIFNWDS 235 (244)
T ss_pred hChHHHHHHHHCCceEEEeeCCc
Confidence 334444443 356665433
No 250
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.08 E-value=7.9e-10 Score=97.33 Aligned_cols=190 Identities=14% Similarity=0.128 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchH-HHHHHHHHHHHhhhc
Q 019145 67 EEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN-VVRTKIKTFAAVAVG 143 (345)
Q Consensus 67 ~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 143 (345)
+..++.|.+.+.. .....+.|+|++|+|||++|..+++........+. ++.++........ ........+......
T Consensus 2 e~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~-v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDG-VIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTE-EEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred HHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 5567788888877 34444899999999999999999988321222222 2223333222222 222222222111000
Q ss_pred CCCCCC---------CCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccceeEEecCC
Q 019145 144 SGQRRG---------GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 214 (345)
Q Consensus 144 ~~~~~~---------~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~ 214 (345)
...... .....++.+||+|+++... ..+.+...+.....+..+|+||.... +...+......+++.++
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR~~~-v~~~~~~~~~~~~l~~L 157 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTTRDRS-VAGSLGGTDKVIELEPL 157 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH--HH-------HCHHSS-EEEEEESCGG-GGTTHHSCEEEEECSS-
T ss_pred cccccccccccccchhhhccccceeeeeeecccc--cccccccccccccccccccccccccc-ccccccccccccccccc
Confidence 000000 0012346799999987543 44444444443345677888886543 33333333668999999
Q ss_pred CHHHHHHHHHHHHHHhC---CCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 019145 215 SEEVMSSRVLHICNEEG---LNLDAEALSTLSSISQGDLRRAITYLQGA 260 (345)
Q Consensus 215 ~~~~~~~~l~~~~~~~~---~~i~~~~~~~l~~~s~g~~r~~~~~l~~~ 260 (345)
+.++..+++.+.+.... ..-.++....|++.|+|.|-.+.-....+
T Consensus 158 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l 206 (287)
T PF00931_consen 158 SEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYL 206 (287)
T ss_dssp -HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999998875444 12235667899999999887754444433
No 251
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=99.08 E-value=4.3e-09 Score=88.85 Aligned_cols=175 Identities=23% Similarity=0.294 Sum_probs=112.4
Q ss_pred ccccHHHHHHHHHHHHc----CCC--Cc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcee----eeecCCccchHHHH
Q 019145 63 VAHQEEVVRVLTNTLET----ANC--PH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL----ELNASDDRGINVVR 131 (345)
Q Consensus 63 ~~g~~~~~~~l~~~l~~----~~~--~~-lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~----~~~~~~~~~~~~~~ 131 (345)
+.||.-+.+.+.+.++. ..+ |- +-|+|++||||+..++.+|+.+...+..+..+. ..+.+....++..+
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Yk 163 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDYK 163 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHHH
Confidence 45776666655555543 322 22 579999999999999999999865444332222 23445545555555
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-------CceEEEEecCcccccc-----
Q 019145 132 TKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------KVTRFFFICNYISRII----- 199 (345)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-------~~~~ii~~~n~~~~l~----- 199 (345)
..++........ ...+.++|+||+|++++...+.|...++.++ .++++|+.+|......
T Consensus 164 ~eL~~~v~~~v~---------~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL 234 (344)
T KOG2170|consen 164 EELKNRVRGTVQ---------ACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIAL 234 (344)
T ss_pred HHHHHHHHHHHH---------hcCCceEEechhhhcCHhHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHHH
Confidence 555443332221 1245699999999999999999999998543 4677888875432110
Q ss_pred ------------------hhhh-------------cc------ce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 019145 200 ------------------EPLA-------------SR------CA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALST 241 (345)
Q Consensus 200 ------------------~~l~-------------~r------~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~ 241 (345)
+.+. ++ .+ .|.|-|++...++..++..+.++|...+.+.++.
T Consensus 235 ~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~el~~rg~~~d~~~~er 314 (344)
T KOG2170|consen 235 ENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRAELRKRGLAPDQDFVER 314 (344)
T ss_pred HHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHHHHHHHhcccccchHHHHH
Confidence 1100 00 01 4677788888888888888888887777777777
Q ss_pred HHHhc
Q 019145 242 LSSIS 246 (345)
Q Consensus 242 l~~~s 246 (345)
+++..
T Consensus 315 va~~l 319 (344)
T KOG2170|consen 315 VANSL 319 (344)
T ss_pred HHHhh
Confidence 76653
No 252
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.07 E-value=7.8e-09 Score=95.87 Aligned_cols=228 Identities=22% Similarity=0.214 Sum_probs=139.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCC---CCCCCCCCCCeEEEE
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG---QRRGGYPCPPYKIII 160 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ili 160 (345)
.+++.|.|||||-.+++++...- . ...+++.+||... +...+.+.+-.+......+. -..+....+..+.+|
T Consensus 338 pvll~GEtGtGKe~laraiH~~s---~-~~gpfvAvNCaAi-p~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlF 412 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNS---E-AAGPFVAVNCAAI-PEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLF 412 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhcc---c-ccCCeEEEEeccc-hHHhhhHHHhccCccccccchhccccccceecCCCccH
Confidence 49999999999999999998764 2 5778999999763 33333333322222111111 122334456778999
Q ss_pred EcCCCCCCHHHHHHHHHHHhhcC----------CceEEEEecCcc-------cccchhhhccce--eEEecCCCH-HHHH
Q 019145 161 LDEADSMTEDAQNALRRTMETYS----------KVTRFFFICNYI-------SRIIEPLASRCA--KFRFKPLSE-EVMS 220 (345)
Q Consensus 161 iDE~~~l~~~~~~~l~~~le~~~----------~~~~ii~~~n~~-------~~l~~~l~~r~~--~i~~~~~~~-~~~~ 220 (345)
+||+..++-..|..|++++++.. -.+++|.+|+.. ..+...|-.|.. .+.++|+-. .+..
T Consensus 413 ldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~~ 492 (606)
T COG3284 413 LDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLYYRLNAFVITLPPLRERSDRI 492 (606)
T ss_pred HHHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcCCchHHHHHHhcCeeeccCchhcccccH
Confidence 99999999999999999998642 134566665432 234556666766 555655532 2333
Q ss_pred HHHHHHHHH---hCCCCCHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhC-CCCCHHHH-----HHhhCCCCHHHHHHHHH
Q 019145 221 SRVLHICNE---EGLNLDAEALSTLSSI-SQGDLRRAITYLQGAARLFG-SSITSKDL-----ISVSGVIPPEVVEGLFA 290 (345)
Q Consensus 221 ~~l~~~~~~---~~~~i~~~~~~~l~~~-s~g~~r~~~~~l~~~~~~~~-~~it~~~v-----~~~~~~~~~~~~~~l~~ 290 (345)
..|.++.++ ..+.++++++..|..+ ..||+|.+-|.++.++..++ +.|...|. .+.........-..+++
T Consensus 493 ~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~~g~~~~~dlp~~l~~~~~~~~~~~~~~~l~~ 572 (606)
T COG3284 493 PLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALSDGGRIRVSDLPPELLEEQATPREDIEKAALLA 572 (606)
T ss_pred HHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCCCeeEcccCCHHHHhhhcccccchHHHHHHH
Confidence 334444333 4467999998888765 59999999999999998874 33433332 22222222222334445
Q ss_pred HHH--cCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 019145 291 VCR--SGDFDLANKEVNNIIAEGYPASLLLSQVT 322 (345)
Q Consensus 291 ~~~--~~~~~~a~~~l~~l~~~g~~~~~i~~~l~ 322 (345)
++. +++...+-+.| |++..-+.+.|.
T Consensus 573 al~~~~~~is~aa~~l------gi~R~T~yrklk 600 (606)
T COG3284 573 ALQATNGNISEAARLL------GISRSTLYRKLK 600 (606)
T ss_pred HHHHcCCCHHHHHHHh------CCCHHHHHHHHH
Confidence 443 44554443332 666655555443
No 253
>PF13173 AAA_14: AAA domain
Probab=99.05 E-value=2.8e-09 Score=81.79 Aligned_cols=120 Identities=26% Similarity=0.362 Sum_probs=77.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHH-HHHHHHHHhhhcCCCCCCCCCCCCeEEEEE
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR-TKIKTFAAVAVGSGQRRGGYPCPPYKIIIL 161 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ilii 161 (345)
+.++|+||.||||||+++.+++.+. ....++.++..+........ +....+... . .....+|+|
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~i~i 67 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLADPDLLEYFLEL-I----------KPGKKYIFI 67 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhhhhhHHHHHHh-h----------ccCCcEEEE
Confidence 3479999999999999999999873 23456667666533321110 011111111 0 013469999
Q ss_pred cCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccc----cchhhhccceeEEecCCCHHHH
Q 019145 162 DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISR----IIEPLASRCAKFRFKPLSEEVM 219 (345)
Q Consensus 162 DE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~----l~~~l~~r~~~i~~~~~~~~~~ 219 (345)
||++.++ +....+..+.+.. .+..+|+++..... ....+..|...+++.|++-.|.
T Consensus 68 DEiq~~~-~~~~~lk~l~d~~-~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 68 DEIQYLP-DWEDALKFLVDNG-PNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ehhhhhc-cHHHHHHHHHHhc-cCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 9999997 4555666666654 56778888754433 3455667888899999997764
No 254
>PRK08939 primosomal protein DnaI; Reviewed
Probab=99.03 E-value=5.8e-10 Score=97.94 Aligned_cols=136 Identities=15% Similarity=0.183 Sum_probs=74.2
Q ss_pred cCcchhhhhhCCCCCccccc----cHHHHHHHHHHHHcC----CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcee
Q 019145 46 QSSQPWVEKYRPKQVKDVAH----QEEVVRVLTNTLETA----NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g----~~~~~~~l~~~l~~~----~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 117 (345)
.+..| ..+...+|+++.. +..+......++... ...+++|+||+|||||+++.++++++.. . +..+.
T Consensus 114 ~a~~p--~~~~~atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~-~--g~~v~ 188 (306)
T PRK08939 114 SIYMP--KDLLQASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAK-K--GVSST 188 (306)
T ss_pred HcCCC--HhHhcCcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHH-c--CCCEE
Confidence 44444 4566677777763 233444445555532 3456999999999999999999999842 2 22333
Q ss_pred eeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC--HHHHHHHH-HHHhhc-CCceEEEEecC
Q 019145 118 ELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--EDAQNALR-RTMETY-SKVTRFFFICN 193 (345)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~--~~~~~~l~-~~le~~-~~~~~ii~~~n 193 (345)
.++.++ -...+...+.. . ..........+.++|||||++.-+ .-..+.++ .+++.+ ....++|+|||
T Consensus 189 ~~~~~~--l~~~lk~~~~~---~----~~~~~l~~l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 189 LLHFPE--FIRELKNSISD---G----SVKEKIDAVKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred EEEHHH--HHHHHHHHHhc---C----cHHHHHHHhcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 333221 00111111100 0 000000011345799999997653 33443344 455654 36677899998
Q ss_pred cc
Q 019145 194 YI 195 (345)
Q Consensus 194 ~~ 195 (345)
..
T Consensus 260 l~ 261 (306)
T PRK08939 260 FD 261 (306)
T ss_pred CC
Confidence 64
No 255
>PRK06921 hypothetical protein; Provisional
Probab=99.02 E-value=2.7e-09 Score=92.08 Aligned_cols=102 Identities=16% Similarity=0.194 Sum_probs=60.0
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEE
Q 019145 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIII 160 (345)
Q Consensus 81 ~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ili 160 (345)
...+++|+||+|+||||++.++++++.... +..++.+...+ ....+...+....... ......++||
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~--g~~v~y~~~~~--l~~~l~~~~~~~~~~~---------~~~~~~dlLi 182 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK--GVPVLYFPFVE--GFGDLKDDFDLLEAKL---------NRMKKVEVLF 182 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc--CceEEEEEHHH--HHHHHHHHHHHHHHHH---------HHhcCCCEEE
Confidence 345799999999999999999999984321 23344443321 1111111111111000 0112456999
Q ss_pred EcCCCC-------CCHHHHHHHHHHHhhcCC-ceEEEEecCcc
Q 019145 161 LDEADS-------MTEDAQNALRRTMETYSK-VTRFFFICNYI 195 (345)
Q Consensus 161 iDE~~~-------l~~~~~~~l~~~le~~~~-~~~ii~~~n~~ 195 (345)
|||++. .+.-..+.|+.+++.... ...+|+++|..
T Consensus 183 IDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~~ 225 (266)
T PRK06921 183 IDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSELT 225 (266)
T ss_pred EeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 999943 344456678888886653 35678888754
No 256
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.99 E-value=4.4e-08 Score=93.09 Aligned_cols=206 Identities=14% Similarity=0.096 Sum_probs=126.8
Q ss_pred cHHHHHHHHHHHHcC-CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcC
Q 019145 66 QEEVVRVLTNTLETA-NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS 144 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~-~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (345)
+++.+..+.-..-.. ....++|.|+.|+|||++++.++.-+-. ..+|+.+..+. +.+.+...+.-......+.
T Consensus 8 ~~~~~~Al~l~av~p~~~gGv~i~g~~G~~ks~~~r~l~~llp~----~~p~r~~p~~~--t~~~L~Gg~Dl~~~l~~g~ 81 (584)
T PRK13406 8 WADAALAAALLAVDPAGLGGVVLRARAGPVRDRWLAALRALLPA----GTPLRRLPPGI--ADDRLLGGLDLAATLRAGR 81 (584)
T ss_pred HHHHHHHHHHhCcCccccceEEEEcCCCcHHHHHHHHHHHhcCC----CCCcccCCCCC--cHHHccCCchHHhHhhcCC
Confidence 445554444333344 5567999999999999999999988721 23444443322 2221111111111111111
Q ss_pred C-CCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-------------CceEEEEecCc---ccccchhhhccce
Q 019145 145 G-QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFFICNY---ISRIIEPLASRCA 207 (345)
Q Consensus 145 ~-~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-------------~~~~ii~~~n~---~~~l~~~l~~r~~ 207 (345)
. ..++....+..+|||+||+..+++..++.|++.+++.. ..+.+|.+.|. ...+.+++.+|+.
T Consensus 82 ~~~~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~ 161 (584)
T PRK13406 82 PVAQRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLA 161 (584)
T ss_pred cCCCCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheE
Confidence 1 33455556778899999999999999999999998642 22333333221 2458899999998
Q ss_pred -eEEecCCCHHHHH-------HHHHHHHHHhCCCCCHHHHHHHHHhc---CC-CHHHHHHHHHHHHHHh---C-CCCCHH
Q 019145 208 -KFRFKPLSEEVMS-------SRVLHICNEEGLNLDAEALSTLSSIS---QG-DLRRAITYLQGAARLF---G-SSITSK 271 (345)
Q Consensus 208 -~i~~~~~~~~~~~-------~~l~~~~~~~~~~i~~~~~~~l~~~s---~g-~~r~~~~~l~~~~~~~---~-~~it~~ 271 (345)
.+.+..++..+.. .+...+..-.++.++++.++.+++.+ +- ..|..+..+..+..++ | ..|+.+
T Consensus 162 l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~ 241 (584)
T PRK13406 162 FHLDLDGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEE 241 (584)
T ss_pred EEEEcCCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 6777777654432 12222222246889999999887754 32 5677777766554443 3 569999
Q ss_pred HHHHhh
Q 019145 272 DLISVS 277 (345)
Q Consensus 272 ~v~~~~ 277 (345)
||.+++
T Consensus 242 dv~~Aa 247 (584)
T PRK13406 242 DLALAA 247 (584)
T ss_pred HHHHHH
Confidence 998775
No 257
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.99 E-value=3.6e-09 Score=93.66 Aligned_cols=123 Identities=20% Similarity=0.195 Sum_probs=70.9
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEc
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiD 162 (345)
.+++|+||+||||||++.++++++... +..++.++..+. ...+......... ............++||||
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~---g~~V~y~t~~~l------~~~l~~~~~~~~~-~~~~~~~~l~~~DLLIID 253 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDR---GKSVIYRTADEL------IEILREIRFNNDK-ELEEVYDLLINCDLLIID 253 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHC---CCeEEEEEHHHH------HHHHHHHHhccch-hHHHHHHHhccCCEEEEe
Confidence 679999999999999999999998533 334444443321 1111110000000 000000011245799999
Q ss_pred CCCCC--CHHHHHHHHHHHhhcCC-ceEEEEecCcccc-----cchhhhccc----eeEEecCCC
Q 019145 163 EADSM--TEDAQNALRRTMETYSK-VTRFFFICNYISR-----IIEPLASRC----AKFRFKPLS 215 (345)
Q Consensus 163 E~~~l--~~~~~~~l~~~le~~~~-~~~ii~~~n~~~~-----l~~~l~~r~----~~i~~~~~~ 215 (345)
|++.. +....+.|+.+++.... ...+|++||.... +.+.+.+|. .++.|...+
T Consensus 254 DlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~eri~SRL~~~~~~i~~~G~d 318 (329)
T PRK06835 254 DLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYSERISSRLLGNFTLLKFYGED 318 (329)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHcCCEEEEecCcC
Confidence 99655 55667889999987653 4568888875422 334555553 466665544
No 258
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.95 E-value=1.6e-08 Score=78.69 Aligned_cols=95 Identities=28% Similarity=0.317 Sum_probs=56.8
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc--------------------hHHHHHHHHHHHHhhh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG--------------------INVVRTKIKTFAAVAV 142 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~ 142 (345)
.+++|+||||||||++++.+++.+.... ..++.+++..... .............
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 76 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARK--- 76 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHh---
Confidence 4689999999999999999999984332 2355555543211 1111111111111
Q ss_pred cCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHH--------HHhhcCCceEEEEecCc
Q 019145 143 GSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRR--------TMETYSKVTRFFFICNY 194 (345)
Q Consensus 143 ~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~--------~le~~~~~~~ii~~~n~ 194 (345)
....++++||++.+.......... ..........+|+++|.
T Consensus 77 -----------~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 77 -----------LKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred -----------cCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 113699999999997655443322 22333456677888875
No 259
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=2.6e-08 Score=85.39 Aligned_cols=106 Identities=21% Similarity=0.290 Sum_probs=74.2
Q ss_pred eEEEEEcCCCCCCH------------HHHHHHHHHHhhcC----------CceEEEEec----Ccccccchhhhccce-e
Q 019145 156 YKIIILDEADSMTE------------DAQNALRRTMETYS----------KVTRFFFIC----NYISRIIEPLASRCA-K 208 (345)
Q Consensus 156 ~~iliiDE~~~l~~------------~~~~~l~~~le~~~----------~~~~ii~~~----n~~~~l~~~l~~r~~-~ 208 (345)
.++|||||+|.+.. .+|--|+.++|... .+..||.++ ..|+.+.|.|..|+. .
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPIR 330 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPIR 330 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCceE
Confidence 56999999998732 35667888887422 233344333 567778999999998 7
Q ss_pred EEecCCCHHHHHHHHHH-----------HHHHhCCC--CCHHHHHHHHHhc---C-----CCHHHHHHHHHHHH
Q 019145 209 FRFKPLSEEVMSSRVLH-----------ICNEEGLN--LDAEALSTLSSIS---Q-----GDLRRAITYLQGAA 261 (345)
Q Consensus 209 i~~~~~~~~~~~~~l~~-----------~~~~~~~~--i~~~~~~~l~~~s---~-----g~~r~~~~~l~~~~ 261 (345)
+++.+++.+++..+|.. .++.+|+. ++++++..|++.+ + =-.|++...++++.
T Consensus 331 VEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlL 404 (444)
T COG1220 331 VELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLL 404 (444)
T ss_pred EEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHH
Confidence 99999999999887643 23345654 7999999999765 1 12566666666554
No 260
>PF05729 NACHT: NACHT domain
Probab=98.91 E-value=9.5e-09 Score=82.50 Aligned_cols=144 Identities=16% Similarity=0.162 Sum_probs=81.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCC---ceeeeecCCccchH---HHHHHHHHHHHhhhcCCCC--CCCCCCCCe
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKS---RVLELNASDDRGIN---VVRTKIKTFAAVAVGSGQR--RGGYPCPPY 156 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 156 (345)
++|+|+||+|||++++.++..+........ .++.+......... .+.+.+............. .........
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNKR 82 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCCc
Confidence 799999999999999999998854433221 22233332211111 2222222211110000000 000112345
Q ss_pred EEEEEcCCCCCCHHH--------HHHHHHHHhh-cCCceEEEEecCcccc-cchhhhccceeEEecCCCHHHHHHHHHHH
Q 019145 157 KIIILDEADSMTEDA--------QNALRRTMET-YSKVTRFFFICNYISR-IIEPLASRCAKFRFKPLSEEVMSSRVLHI 226 (345)
Q Consensus 157 ~iliiDE~~~l~~~~--------~~~l~~~le~-~~~~~~ii~~~n~~~~-l~~~l~~r~~~i~~~~~~~~~~~~~l~~~ 226 (345)
-+++||.+|.+.... .+.|..++.. .++++.+++++++... -..........+.+.+++.+++.+++.+.
T Consensus 83 ~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLRKY 162 (166)
T ss_pred eEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHHHH
Confidence 689999999886532 2345566665 4567788888765432 12222223357899999999999999887
Q ss_pred HH
Q 019145 227 CN 228 (345)
Q Consensus 227 ~~ 228 (345)
+.
T Consensus 163 f~ 164 (166)
T PF05729_consen 163 FS 164 (166)
T ss_pred hh
Confidence 64
No 261
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=1.1e-08 Score=99.47 Aligned_cols=119 Identities=25% Similarity=0.410 Sum_probs=86.2
Q ss_pred ccccccHHHHHHHHHHHHcCC-----C-Cc--EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc------
Q 019145 61 KDVAHQEEVVRVLTNTLETAN-----C-PH--MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG------ 126 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~-----~-~~--lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~------ 126 (345)
+.++||++++..+.+.+...+ . +. ++|.||+|+|||-+|+++|..+++. ...++.++.+....
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgs---e~~~IriDmse~~evsklig 638 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGS---EENFIRLDMSEFQEVSKLIG 638 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCC---ccceEEechhhhhhhhhccC
Confidence 357899999999999886633 1 22 7999999999999999999999654 34666676654111
Q ss_pred -------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEE
Q 019145 127 -------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRF 188 (345)
Q Consensus 127 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~i 188 (345)
..... .+... ....++.||++||++....+.++.|++++++.. .+++|
T Consensus 639 sp~gyvG~e~gg-~Ltea-------------vrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~ 704 (898)
T KOG1051|consen 639 SPPGYVGKEEGG-QLTEA-------------VKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIF 704 (898)
T ss_pred CCcccccchhHH-HHHHH-------------HhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEE
Confidence 11111 11110 234578899999999999999999999999654 47888
Q ss_pred EEecCccc
Q 019145 189 FFICNYIS 196 (345)
Q Consensus 189 i~~~n~~~ 196 (345)
|+|+|...
T Consensus 705 IMTsn~~~ 712 (898)
T KOG1051|consen 705 IMTSNVGS 712 (898)
T ss_pred EEecccch
Confidence 99987643
No 262
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.90 E-value=1.2e-07 Score=79.74 Aligned_cols=139 Identities=19% Similarity=0.241 Sum_probs=92.9
Q ss_pred HHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCC
Q 019145 69 VVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR 148 (345)
Q Consensus 69 ~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (345)
....+..++.... .-.++||+|||||.+++.+++.+ +..++.++|.+..+...+...+.......
T Consensus 21 ~~~~l~~al~~~~--~~~~~GpagtGKtetik~La~~l------G~~~~vfnc~~~~~~~~l~ril~G~~~~G------- 85 (231)
T PF12774_consen 21 CFLTLTQALSLNL--GGALSGPAGTGKTETIKDLARAL------GRFVVVFNCSEQMDYQSLSRILKGLAQSG------- 85 (231)
T ss_dssp HHHHHHHHHCTTT--EEEEESSTTSSHHHHHHHHHHCT------T--EEEEETTSSS-HHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHhccCC--CCCCcCCCCCCchhHHHHHHHHh------CCeEEEecccccccHHHHHHHHHHHhhcC-------
Confidence 3345555554332 35789999999999999999998 88999999999888888888888876653
Q ss_pred CCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHh-------hcC-------------CceEEEEecCc----ccccchhhhc
Q 019145 149 GGYPCPPYKIIILDEADSMTEDAQNALRRTME-------TYS-------------KVTRFFFICNY----ISRIIEPLAS 204 (345)
Q Consensus 149 ~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le-------~~~-------------~~~~ii~~~n~----~~~l~~~l~~ 204 (345)
..+++||++.++.+....+.+.+. ... +++.+.++.|+ ...+++.++.
T Consensus 86 --------aW~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~ 157 (231)
T PF12774_consen 86 --------AWLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA 157 (231)
T ss_dssp ---------EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT
T ss_pred --------chhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH
Confidence 389999999999877665544443 111 23445556553 3568999999
Q ss_pred cceeEEecCCCHHHHHHHHHHHHHHhCCC
Q 019145 205 RCAKFRFKPLSEEVMSSRVLHICNEEGLN 233 (345)
Q Consensus 205 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 233 (345)
-+..+.+..|+...+.+++ +-..|+.
T Consensus 158 lFRpvam~~PD~~~I~ei~---L~s~GF~ 183 (231)
T PF12774_consen 158 LFRPVAMMVPDLSLIAEIL---LLSQGFK 183 (231)
T ss_dssp TEEEEE--S--HHHHHHHH---HHCCCTS
T ss_pred HhheeEEeCCCHHHHHHHH---HHHcCch
Confidence 9999999999888777766 3455654
No 263
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.89 E-value=9.4e-09 Score=88.93 Aligned_cols=148 Identities=20% Similarity=0.216 Sum_probs=87.4
Q ss_pred HHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCC-CCCCC
Q 019145 73 LTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ-RRGGY 151 (345)
Q Consensus 73 l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 151 (345)
+..++..+. +++|+||+|||||.+++.+.+.+... ......++.+...+...+...++. ...... ...++
T Consensus 26 l~~l~~~~~--pvLl~G~~GtGKT~li~~~l~~l~~~---~~~~~~~~~s~~Tts~~~q~~ie~----~l~k~~~~~~gP 96 (272)
T PF12775_consen 26 LDLLLSNGR--PVLLVGPSGTGKTSLIQNFLSSLDSD---KYLVITINFSAQTTSNQLQKIIES----KLEKRRGRVYGP 96 (272)
T ss_dssp HHHHHHCTE--EEEEESSTTSSHHHHHHHHHHCSTTC---CEEEEEEES-TTHHHHHHHHCCCT----TECECTTEEEEE
T ss_pred HHHHHHcCC--cEEEECCCCCchhHHHHhhhccCCcc---ccceeEeeccCCCCHHHHHHHHhh----cEEcCCCCCCCC
Confidence 344444443 69999999999999999988765211 222334555443333333322221 111110 11123
Q ss_pred CCCCeEEEEEcCCCCCCH------HHHHHHHHHHhhcC------------CceEEEEecCcc---cccchhhhccceeEE
Q 019145 152 PCPPYKIIILDEADSMTE------DAQNALRRTMETYS------------KVTRFFFICNYI---SRIIEPLASRCAKFR 210 (345)
Q Consensus 152 ~~~~~~iliiDE~~~l~~------~~~~~l~~~le~~~------------~~~~ii~~~n~~---~~l~~~l~~r~~~i~ 210 (345)
..+++-|++|||++.-.. ...+.|.++++... .++.++.++++. ..+.+++.+++.++.
T Consensus 97 ~~~k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~i~~ 176 (272)
T PF12775_consen 97 PGGKKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFNILN 176 (272)
T ss_dssp ESSSEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEEEEE
T ss_pred CCCcEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheEEEE
Confidence 345667999999987643 35688888887421 245566666542 347889999999999
Q ss_pred ecCCCHHHHHHHHHHHHHH
Q 019145 211 FKPLSEEVMSSRVLHICNE 229 (345)
Q Consensus 211 ~~~~~~~~~~~~l~~~~~~ 229 (345)
++.|+.+.+..+...++..
T Consensus 177 ~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 177 IPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp ----TCCHHHHHHHHHHHH
T ss_pred ecCCChHHHHHHHHHHHhh
Confidence 9999999999888887764
No 264
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.87 E-value=2.6e-07 Score=83.30 Aligned_cols=215 Identities=19% Similarity=0.208 Sum_probs=130.0
Q ss_pred hhhhhhCCCCCccccccHHHHHHHHHHHHcCC------------CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcee
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETAN------------CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~------------~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 117 (345)
++.++....--.++.|+.++++.|.-.+-.+. .-|++|.|.||+.||.|.+.+.+-.- ..++
T Consensus 331 d~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlap------RgvY 404 (721)
T KOG0482|consen 331 DFYEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAP------RGVY 404 (721)
T ss_pred cHHHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCc------ccce
Confidence 45566655444588999999999887775432 11489999999999999999987651 1111
Q ss_pred e-eecCCccchHHHHHHHHHHHHhhhcCC--CCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------
Q 019145 118 E-LNASDDRGINVVRTKIKTFAAVAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS----------- 183 (345)
Q Consensus 118 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~----------- 183 (345)
. --++...+. .....+. +.... ..-+..-.++.+|.+|||+|++......++.+++|.-.
T Consensus 405 TTGrGSSGVGL--TAAVmkD----pvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~Tt 478 (721)
T KOG0482|consen 405 TTGRGSSGVGL--TAAVMKD----PVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTT 478 (721)
T ss_pred ecCCCCCcccc--chhhhcC----CCCCeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccc
Confidence 1 111111111 1111111 00000 00111234567899999999999888888888888532
Q ss_pred --CceEEEEecCccc-------------ccchhhhccceeE-------------------------------EecCCCHH
Q 019145 184 --KVTRFFFICNYIS-------------RIIEPLASRCAKF-------------------------------RFKPLSEE 217 (345)
Q Consensus 184 --~~~~ii~~~n~~~-------------~l~~~l~~r~~~i-------------------------------~~~~~~~~ 217 (345)
..+.++.++|+.. .++.+|+|||+.+ .|.|++.+
T Consensus 479 LNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~ 558 (721)
T KOG0482|consen 479 LNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPN 558 (721)
T ss_pred hhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHH
Confidence 2233444444321 2678889988732 56666777
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHh--------------cCCCHHHHHHHHHHHHHHh----CCCCCHHHHHHhh
Q 019145 218 VMSSRVLHICNEEGLNLDAEALSTLSSI--------------SQGDLRRAITYLQGAARLF----GSSITSKDLISVS 277 (345)
Q Consensus 218 ~~~~~l~~~~~~~~~~i~~~~~~~l~~~--------------s~g~~r~~~~~l~~~~~~~----~~~it~~~v~~~~ 277 (345)
-++.+|. .|+...--++++..+.|... +.-.+|.++..+.-..+.+ ...+..+||.+++
T Consensus 559 ~mR~yI~-~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EAL 635 (721)
T KOG0482|consen 559 LMRRYIS-LAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEAL 635 (721)
T ss_pred HHHHHHH-HHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHH
Confidence 7777664 34444445677777776532 1346888888876554444 4558888888775
No 265
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=9.6e-08 Score=84.59 Aligned_cols=214 Identities=21% Similarity=0.191 Sum_probs=115.9
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc----chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeE
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (345)
..|+||.||+|+|||.+++.||+-+ +.+|.-.+|..-. -.+++...+..+...+... ...+..+
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~l------dVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~n------VekAQqG 293 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVL------DVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYN------VEKAQQG 293 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHh------CCCeEEecccchhhcccccccHHHHHHHHHHHccCC------HHHHhcC
Confidence 3579999999999999999999999 7888878775421 1234445555544332211 1123567
Q ss_pred EEEEcCCCCCC--------------HHHHHHHHHHHhhc-------------CCc------eEEEEe-cCcccccchhhh
Q 019145 158 IIILDEADSMT--------------EDAQNALRRTMETY-------------SKV------TRFFFI-CNYISRIIEPLA 203 (345)
Q Consensus 158 iliiDE~~~l~--------------~~~~~~l~~~le~~-------------~~~------~~ii~~-~n~~~~l~~~l~ 203 (345)
||+|||+|++. ..+|..|++++|.. +.. ..|+|+ +.-...+.+.+.
T Consensus 294 IVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~ 373 (564)
T KOG0745|consen 294 IVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIIS 373 (564)
T ss_pred eEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHH
Confidence 99999999985 24789999999831 011 112222 233444566666
Q ss_pred ccce--eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHh----CCCCCHHHHHHh
Q 019145 204 SRCA--KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF----GSSITSKDLISV 276 (345)
Q Consensus 204 ~r~~--~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~----~~~it~~~v~~~ 276 (345)
+|.+ .+-|..++.. ..-.......+.+.+...-..+.+.+ .+|+=..=..=+.+..+- -..++.+++-.+
T Consensus 374 rR~~d~slGFg~~s~~---~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~V 450 (564)
T KOG0745|consen 374 RRLDDKSLGFGAPSSK---GVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRV 450 (564)
T ss_pred HhhcchhcccCCCCCc---cchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHH
Confidence 6665 5666666542 22222222244444444444344433 444432111112221110 123667777777
Q ss_pred hCCCCHHHHHHHHHHHHcCC------HHHHHHHHHHHHHcC
Q 019145 277 SGVIPPEVVEGLFAVCRSGD------FDLANKEVNNIIAEG 311 (345)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~~~------~~~a~~~l~~l~~~g 311 (345)
+....... .+-.+++++.+ ...|++.+.++.-..
T Consensus 451 LtEPknaL-~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r 490 (564)
T KOG0745|consen 451 LTEPKNAL-GKQYKKLFGMDNVELHFTEKALEAIAQLALKR 490 (564)
T ss_pred HhcchhhH-HHHHHHHhccCCeeEEecHHHHHHHHHHHHhh
Confidence 66543332 23334444432 245677776665433
No 266
>PHA00729 NTP-binding motif containing protein
Probab=98.84 E-value=2e-08 Score=83.16 Aligned_cols=126 Identities=18% Similarity=0.186 Sum_probs=71.4
Q ss_pred HHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCC--CceeeeecCC---ccchHHHHHHHHHHHHhhhcCCCC
Q 019145 73 LTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYK--SRVLELNASD---DRGINVVRTKIKTFAAVAVGSGQR 147 (345)
Q Consensus 73 l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 147 (345)
+...+..+...+++|+|+|||||||+|.++++.+.. .... ......+... ..+.+.+...+......
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~~-~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~------- 79 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVFW-KLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDN------- 79 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHHh-hcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhc-------
Confidence 444455666678999999999999999999998720 0000 0000001111 11222233333321111
Q ss_pred CCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHH
Q 019145 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225 (345)
Q Consensus 148 ~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~ 225 (345)
....+++||||+......- . +-. .. ......+.+.+++|+..+.|.+++.+++...++.
T Consensus 80 -----~~~~dlLIIDd~G~~~~~~---~--wh~---~~------~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 80 -----DYRIPLIIFDDAGIWLSKY---V--WYE---DY------MKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred -----CCCCCEEEEeCCchhhccc---c--hhh---hc------cchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 0123589999975432110 0 000 00 0234557788899999999999999999998865
No 267
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1e-07 Score=89.96 Aligned_cols=166 Identities=22% Similarity=0.247 Sum_probs=104.5
Q ss_pred ccHHHHHHHHHHHHcC---------CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc--hHHHHHH
Q 019145 65 HQEEVVRVLTNTLETA---------NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG--INVVRTK 133 (345)
Q Consensus 65 g~~~~~~~l~~~l~~~---------~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 133 (345)
+++..+..+...+.-. ..+.+||+|+||||||+++++++.++ +.++++++|..-.. .......
T Consensus 405 ~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~l------g~h~~evdc~el~~~s~~~~etk 478 (953)
T KOG0736|consen 405 GLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASEL------GLHLLEVDCYELVAESASHTETK 478 (953)
T ss_pred cchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHh------CCceEeccHHHHhhcccchhHHH
Confidence 4455555555554332 12348999999999999999999999 88888888753211 1111111
Q ss_pred HHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC--------HHHHHHHHHHHh--h---cCCceEEEEecCcccccch
Q 019145 134 IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------EDAQNALRRTME--T---YSKVTRFFFICNYISRIIE 200 (345)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~--------~~~~~~l~~~le--~---~~~~~~ii~~~n~~~~l~~ 200 (345)
+......+ ...+..+|++-++|-+. ...+..+...+. . ..+.+.+|.+++....+++
T Consensus 479 l~~~f~~a----------~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~ 548 (953)
T KOG0736|consen 479 LQAIFSRA----------RRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPA 548 (953)
T ss_pred HHHHHHHH----------hhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCH
Confidence 11111111 11133477777776653 223334444443 1 2245667777888899999
Q ss_pred hhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhcCC
Q 019145 201 PLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQG 248 (345)
Q Consensus 201 ~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~s~g 248 (345)
.+++.+. .+.++.++.+|..++++.+..... ++.++ ...++..+.|
T Consensus 549 ~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~--~n~~v~~k~~a~~t~g 596 (953)
T KOG0736|consen 549 DIQSLFLHEIEVPALSEEQRLEILQWYLNHLP--LNQDVNLKQLARKTSG 596 (953)
T ss_pred HHHHhhhhhccCCCCCHHHHHHHHHHHHhccc--cchHHHHHHHHHhcCC
Confidence 9988776 899999999999999999986544 44443 5666666654
No 268
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.82 E-value=2.7e-07 Score=82.85 Aligned_cols=114 Identities=18% Similarity=0.281 Sum_probs=67.2
Q ss_pred hCCCCCccccccHHHHHHHH---HHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHH
Q 019145 55 YRPKQVKDVAHQEEVVRVLT---NTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (345)
Q Consensus 55 ~~p~~~~~~~g~~~~~~~l~---~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (345)
|.|..|+ ....+..|. .++..+ .|+++.||+||||||++.++.....+. ++ ...+. .
T Consensus 185 ~~P~~~~----~r~k~~~L~rl~~fve~~--~Nli~lGp~GTGKThla~~l~~~~a~~----------sG-~f~T~---a 244 (449)
T TIGR02688 185 YEPEGFE----ARQKLLLLARLLPLVEPN--YNLIELGPKGTGKSYIYNNLSPYVILI----------SG-GTITV---A 244 (449)
T ss_pred CCcccCC----hHHHHHHHHhhHHHHhcC--CcEEEECCCCCCHHHHHHHHhHHHHHH----------cC-CcCcH---H
Confidence 5665554 333443343 345444 589999999999999999998872111 11 11122 2
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH----HHHHHHHHHHhhcC---------CceEEEEecCccc
Q 019145 132 TKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE----DAQNALRRTMETYS---------KVTRFFFICNYIS 196 (345)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~----~~~~~l~~~le~~~---------~~~~ii~~~n~~~ 196 (345)
..+........+ .....++|+|||+..++. +....|..+|++.. ....+++++|-..
T Consensus 245 ~Lf~~L~~~~lg--------~v~~~DlLI~DEvgylp~~~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~~ 314 (449)
T TIGR02688 245 KLFYNISTRQIG--------LVGRWDVVAFDEVATLKFAKPKELIGILKNYMESGSFTRGDETKSSDASFVFLGNVPL 314 (449)
T ss_pred HHHHHHHHHHHh--------hhccCCEEEEEcCCCCcCCchHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccCC
Confidence 223322221111 224668999999999643 35567777777532 3567888887543
No 269
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.80 E-value=4.6e-08 Score=91.01 Aligned_cols=144 Identities=21% Similarity=0.194 Sum_probs=88.4
Q ss_pred cccccHHHHHHHHHHHHcCCC------------CcEEEeCCCCCCHHHHHHHHHHHhcCC---CCCCCceeeeecCCccc
Q 019145 62 DVAHQEEVVRVLTNTLETANC------------PHMLFYGPPGTGKTTTALAIAHQLFGP---ELYKSRVLELNASDDRG 126 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~~~------------~~lll~G~~G~GKT~la~~la~~l~~~---~~~~~~~~~~~~~~~~~ 126 (345)
++.|++++++.+.-.+..|.. -|+||+|.||||||.+.+-+++-+-.. .+++..-+.+.+.-...
T Consensus 430 sIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd 509 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKD 509 (804)
T ss_pred hhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEec
Confidence 567888888887777765421 259999999999999999998876210 00111111111100000
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc-------------CCceEEEEecC
Q 019145 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-------------SKVTRFFFICN 193 (345)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~-------------~~~~~ii~~~n 193 (345)
.+. +..+- ..+....++.++.+|||+|+++....+.|.+.||.- ...+.++.++|
T Consensus 510 ~dt-kqlVL-----------esGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaAN 577 (804)
T KOG0478|consen 510 PDT-RQLVL-----------ESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAAN 577 (804)
T ss_pred Ccc-ceeee-----------ecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeec
Confidence 000 00000 111122356789999999999999999999999852 24566777776
Q ss_pred ccc-------------ccchhhhcccee--EEecCCCHH
Q 019145 194 YIS-------------RIIEPLASRCAK--FRFKPLSEE 217 (345)
Q Consensus 194 ~~~-------------~l~~~l~~r~~~--i~~~~~~~~ 217 (345)
+.. .+++.|++||+. +-+.+++..
T Consensus 578 P~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 578 PIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDER 616 (804)
T ss_pred cccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchh
Confidence 432 278999999994 345666543
No 270
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.79 E-value=3.4e-09 Score=81.66 Aligned_cols=110 Identities=21% Similarity=0.299 Sum_probs=62.5
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCC--CCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCC--------CCC
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPE--LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG--------GYP 152 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 152 (345)
..++++||+|+|||++++.+++.+.... .....++.++++...+...+...+............... ...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 3589999999999999999999873100 003455555554433332222222221111111100000 000
Q ss_pred CCCeEEEEEcCCCCC-CHHHHHHHHHHHhhcCCceEEEEecCc
Q 019145 153 CPPYKIIILDEADSM-TEDAQNALRRTMETYSKVTRFFFICNY 194 (345)
Q Consensus 153 ~~~~~iliiDE~~~l-~~~~~~~l~~~le~~~~~~~ii~~~n~ 194 (345)
.....+|+|||+|.+ +....+.|..+.+ ...+.+|+++.+
T Consensus 85 ~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred hcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 112359999999999 8888888888777 566778888765
No 271
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.77 E-value=3.9e-08 Score=93.61 Aligned_cols=145 Identities=22% Similarity=0.238 Sum_probs=90.5
Q ss_pred hhhhCCCCCccccccHHHHHHHHHHHHcCCC------------CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeee
Q 019145 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETANC------------PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (345)
Q Consensus 52 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~------------~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 119 (345)
.++....-...+.|++.+++++.-.+.+|.. -|+||.|.||||||.+.+.+.+-+ ...+ ..
T Consensus 277 ~~~l~~SiaPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~a------Pr~v-yt 349 (682)
T COG1241 277 YDILIKSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLA------PRGV-YT 349 (682)
T ss_pred HHHHHHHhcccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhC------CceE-EE
Confidence 3444333445788999999998888866432 258999999999999999999876 1111 11
Q ss_pred ec--CCccchH--HHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC------------
Q 019145 120 NA--SDDRGIN--VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------------ 183 (345)
Q Consensus 120 ~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~------------ 183 (345)
++ +...+.. ..+..... ... ...+....++.++++|||+|.++.....++...||...
T Consensus 350 sgkgss~~GLTAav~rd~~tg--e~~----LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atL 423 (682)
T COG1241 350 SGKGSSAAGLTAAVVRDKVTG--EWV----LEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATL 423 (682)
T ss_pred ccccccccCceeEEEEccCCC--eEE----EeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeec
Confidence 11 1111110 00000000 000 01122334577899999999999999999999999632
Q ss_pred -CceEEEEecCccc-------------ccchhhhccceeE
Q 019145 184 -KVTRFFFICNYIS-------------RIIEPLASRCAKF 209 (345)
Q Consensus 184 -~~~~ii~~~n~~~-------------~l~~~l~~r~~~i 209 (345)
..+.+++++|+.. .++++++|||+.+
T Consensus 424 nARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLi 463 (682)
T COG1241 424 NARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLI 463 (682)
T ss_pred chhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCee
Confidence 2344555566543 2678899999954
No 272
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.77 E-value=6.8e-07 Score=91.29 Aligned_cols=188 Identities=16% Similarity=0.174 Sum_probs=114.8
Q ss_pred CCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHH
Q 019145 56 RPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (345)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (345)
.|..-..++-++.....+... ...+-++++||+|+||||++..+.+.. . ....+.++..+......+...+.
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~---~--~~~w~~l~~~d~~~~~f~~~l~~ 80 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGK---N--NLGWYSLDESDNQPERFASYLIA 80 (903)
T ss_pred CCCCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhC---C--CeEEEecCcccCCHHHHHHHHHH
Confidence 354556777788887777532 233457999999999999999988653 1 12223334444333222222232
Q ss_pred HHHHhhhcCCC-------CCC-C-------------CCCCCeEEEEEcCCCCCCHHH-HHHHHHHHhhcCCceEEEEecC
Q 019145 136 TFAAVAVGSGQ-------RRG-G-------------YPCPPYKIIILDEADSMTEDA-QNALRRTMETYSKVTRFFFICN 193 (345)
Q Consensus 136 ~~~~~~~~~~~-------~~~-~-------------~~~~~~~iliiDE~~~l~~~~-~~~l~~~le~~~~~~~ii~~~n 193 (345)
.+......... ... . ......-+|||||+|.+.... .+.+..++...+++..+|+++.
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR 160 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSR 160 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 22211100000 000 0 011345689999999997544 4567777777788888888775
Q ss_pred ccccc-chhhhccceeEEec----CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHH
Q 019145 194 YISRI-IEPLASRCAKFRFK----PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAI 254 (345)
Q Consensus 194 ~~~~l-~~~l~~r~~~i~~~----~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~ 254 (345)
....+ ...+.-+...+.+. +++.+|...++...+ |..++++.+..+.+.|+|++-.+.
T Consensus 161 ~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~---~~~~~~~~~~~l~~~t~Gwp~~l~ 223 (903)
T PRK04841 161 NLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRL---SSPIEAAESSRLCDDVEGWATALQ 223 (903)
T ss_pred CCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhcc---CCCCCHHHHHHHHHHhCChHHHHH
Confidence 43222 12232233344444 889999999986443 778999999999999999987654
No 273
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.76 E-value=8.2e-08 Score=88.72 Aligned_cols=214 Identities=20% Similarity=0.182 Sum_probs=120.5
Q ss_pred hhCCCCCccccccHHHHHHHHHHHHcCC------------CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeec
Q 019145 54 KYRPKQVKDVAHQEEVVRVLTNTLETAN------------CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (345)
Q Consensus 54 ~~~p~~~~~~~g~~~~~~~l~~~l~~~~------------~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 121 (345)
+..-.-|..+.|++.++..+.-.+..|. -.|+++.|.||+|||.+.++.+.-+ . .-++.++
T Consensus 338 ~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fs------P-R~vYtsG 410 (764)
T KOG0480|consen 338 NLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFS------P-RSVYTSG 410 (764)
T ss_pred HHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccC------C-cceEecC
Confidence 3333445567799999888777775542 2359999999999999999987654 1 1111211
Q ss_pred C--CccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-------------Cce
Q 019145 122 S--DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVT 186 (345)
Q Consensus 122 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-------------~~~ 186 (345)
. ...+... ..++.-. ........+....++.+|.+|||+|++....+.+|++.||+-. ..+
T Consensus 411 kaSSaAGLTa--aVvkD~e--sgdf~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARt 486 (764)
T KOG0480|consen 411 KASSAAGLTA--AVVKDEE--SGDFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNART 486 (764)
T ss_pred cccccccceE--EEEecCC--CCceeeecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEeecchh
Confidence 1 1011000 0000000 0000001112234577899999999999989999999998532 344
Q ss_pred EEEEecCccc-------------ccchhhhccceeE--Eec-----------------------------CCCHHHHHHH
Q 019145 187 RFFFICNYIS-------------RIIEPLASRCAKF--RFK-----------------------------PLSEEVMSSR 222 (345)
Q Consensus 187 ~ii~~~n~~~-------------~l~~~l~~r~~~i--~~~-----------------------------~~~~~~~~~~ 222 (345)
.++.++|+.. .+..++.|||+.+ -+. +++.++++.+
T Consensus 487 SIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkY 566 (764)
T KOG0480|consen 487 SILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKY 566 (764)
T ss_pred hhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHH
Confidence 4555565432 2567888888732 222 3445556665
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHhc--------CC--------CHHHH---HHHHHHHHHH-hCCCCCHHHHHHhhCC
Q 019145 223 VLHICNEEGLNLDAEALSTLSSIS--------QG--------DLRRA---ITYLQGAARL-FGSSITSKDLISVSGV 279 (345)
Q Consensus 223 l~~~~~~~~~~i~~~~~~~l~~~s--------~g--------~~r~~---~~~l~~~~~~-~~~~it~~~v~~~~~~ 279 (345)
|.... .-.-.++.++.+.|.+.. .| ..|.+ +.+-+..|.. ..++||.++++++...
T Consensus 567 i~yAR-~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eL 642 (764)
T KOG0480|consen 567 IRYAR-NFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVEL 642 (764)
T ss_pred HHHHH-hcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHH
Confidence 54332 222336777777776542 11 13333 3333333322 2567999998877543
No 274
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.75 E-value=3.8e-07 Score=70.25 Aligned_cols=128 Identities=16% Similarity=0.274 Sum_probs=73.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCC----------------CCCceeeeecCC-----------------ccchHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPEL----------------YKSRVLELNASD-----------------DRGINVV 130 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~----------------~~~~~~~~~~~~-----------------~~~~~~~ 130 (345)
.+.++|+||+||||++..++..+...+. .++.++.+.... ....+.+
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~l 86 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEGL 86 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHHH
Confidence 3899999999999999999988843321 123333333111 0111222
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCC---CHHHHHHHHHHHhhcCCceEEEEec--Ccccccchhhhcc
Q 019145 131 RTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM---TEDAQNALRRTMETYSKVTRFFFIC--NYISRIIEPLASR 205 (345)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l---~~~~~~~l~~~le~~~~~~~ii~~~--n~~~~l~~~l~~r 205 (345)
.+........+. ...+++||||+..+ +++..+.+-+.+....+ +|++- ++.+.+.+.++++
T Consensus 87 e~i~~~al~rA~-----------~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kp---liatlHrrsr~P~v~~ik~~ 152 (179)
T COG1618 87 EEIAIPALRRAL-----------EEADVIIIDEIGPMELKSKKFREAVEEVLKSGKP---LIATLHRRSRHPLVQRIKKL 152 (179)
T ss_pred HHHhHHHHHHHh-----------hcCCEEEEecccchhhccHHHHHHHHHHhcCCCc---EEEEEecccCChHHHHhhhc
Confidence 212111111111 12369999999876 55666677777765322 44432 4556677888888
Q ss_pred ceeEE-ecCCCHHHHHHHHHH
Q 019145 206 CAKFR-FKPLSEEVMSSRVLH 225 (345)
Q Consensus 206 ~~~i~-~~~~~~~~~~~~l~~ 225 (345)
..++. +.|-+.+.+...+..
T Consensus 153 ~~v~v~lt~~NR~~i~~~Il~ 173 (179)
T COG1618 153 GGVYVFLTPENRNRILNEILS 173 (179)
T ss_pred CCEEEEEccchhhHHHHHHHH
Confidence 88666 555565644444433
No 275
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.70 E-value=7.6e-07 Score=75.28 Aligned_cols=195 Identities=18% Similarity=0.193 Sum_probs=114.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCC-CCCCCCCCeEEEEE
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR-RGGYPCPPYKIIIL 161 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ilii 161 (345)
..++|.||+|.||+.+++.+..--......+..|+++||...++.......+........+.... .+....++.+++++
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlfl 288 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFL 288 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEeh
Confidence 35999999999999999988654434444577999999988766655555444433222221111 12223456789999
Q ss_pred cCCCCCCHHHHHHHHHHHhhcCC-----------ceEEEEec-Cc------ccccchhhhccceeEEecCCCH----HHH
Q 019145 162 DEADSMTEDAQNALRRTMETYSK-----------VTRFFFIC-NY------ISRIIEPLASRCAKFRFKPLSE----EVM 219 (345)
Q Consensus 162 DE~~~l~~~~~~~l~~~le~~~~-----------~~~ii~~~-n~------~~~l~~~l~~r~~~i~~~~~~~----~~~ 219 (345)
||+..+..+.+..|++.+++..- ...+|.-+ .+ ...+-..+..|.....|..|-. +++
T Consensus 289 deigelgadeqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~arinlwtf~lpgl~qr~edi 368 (531)
T COG4650 289 DEIGELGADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDI 368 (531)
T ss_pred HhhhhcCccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhhheeeeeccccccCcccc
Confidence 99999999999999999986321 11122111 00 0112233334444333333321 222
Q ss_pred HH----HHHHHHHHhC--CCCCHHHHHHHHH-------hcCCCHHHHHHHHHHHHHHh-CCCCCHHHHHHhh
Q 019145 220 SS----RVLHICNEEG--LNLDAEALSTLSS-------ISQGDLRRAITYLQGAARLF-GSSITSKDLISVS 277 (345)
Q Consensus 220 ~~----~l~~~~~~~~--~~i~~~~~~~l~~-------~s~g~~r~~~~~l~~~~~~~-~~~it~~~v~~~~ 277 (345)
.. -+.+.+...| +.+.-++-..-.. ...||.|.+-..+...+..+ ++.||.+.|++-+
T Consensus 369 epnldyelerha~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrmatlad~grit~~~ve~ei 440 (531)
T COG4650 369 EPNLDYELERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATLADSGRITLDVVEDEI 440 (531)
T ss_pred CCCccHHHHHHHHhhCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHHHHHhcCCceeHHHHHHHH
Confidence 11 1223333333 4455555333222 23699999988888887776 5679988886543
No 276
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.68 E-value=2.6e-06 Score=88.73 Aligned_cols=190 Identities=15% Similarity=0.127 Sum_probs=105.9
Q ss_pred CCCCccccccHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceee---eecCC--------
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE---LNASD-------- 123 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~~--~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~---~~~~~-------- 123 (345)
+..+++++|.+..++.+..++... ....+-|+|++|+||||+|+++++.+.. .+....++. +....
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~-~F~g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR-QFQSSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred CcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh-cCCeEEEeeccccccchhhcccccc
Confidence 346788999999999998888543 2233799999999999999999988732 221111111 00000
Q ss_pred -ccc--hHHHHHHHHHHHHhhhcCCCCC------CCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCc
Q 019145 124 -DRG--INVVRTKIKTFAAVAVGSGQRR------GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (345)
Q Consensus 124 -~~~--~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~ 194 (345)
... .......+...... .+... ......++-+|++||++. ....+.+....+......++|+||..
T Consensus 259 ~~~~~~~~l~~~~l~~il~~---~~~~~~~~~~~~~~L~~krvLLVLDdv~~--~~~l~~L~~~~~~~~~GsrIIiTTrd 333 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDK---KDIKIYHLGAMEERLKHRKVLIFIDDLDD--QDVLDALAGQTQWFGSGSRIIVITKD 333 (1153)
T ss_pred cccchhHHHHHHHHHHHhCC---CCcccCCHHHHHHHHhCCeEEEEEeCCCC--HHHHHHHHhhCccCCCCcEEEEEeCc
Confidence 000 00000111111000 00000 001123556899999864 34555565544443445677777765
Q ss_pred ccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHhcCCCHHHHH
Q 019145 195 ISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLD--AEALSTLSSISQGDLRRAI 254 (345)
Q Consensus 195 ~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~--~~~~~~l~~~s~g~~r~~~ 254 (345)
...+.. . .-..++....++.++..+++.+.+-....+-+ .+....++++++|.+-.+.
T Consensus 334 ~~vl~~-~-~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~ 393 (1153)
T PLN03210 334 KHFLRA-H-GIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLN 393 (1153)
T ss_pred HHHHHh-c-CCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHH
Confidence 432211 0 01237888899999998888877644332211 2446678889999876543
No 277
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.6e-06 Score=78.89 Aligned_cols=137 Identities=17% Similarity=0.291 Sum_probs=82.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc-cch------HHHHHHHHHHHHhhhcCCCCCCCCCCCCe
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD-RGI------NVVRTKIKTFAAVAVGSGQRRGGYPCPPY 156 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (345)
.+||.||||+|||+||..+|..- +++|+.+-.+.. .+. ..+...+..... ++-
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S------~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYk--------------S~l 599 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSS------DFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYK--------------SPL 599 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhc------CCCeEEEeChHHccCccHHHHHHHHHHHHHHhhc--------------Ccc
Confidence 48999999999999999999886 788888754432 221 223333333222 234
Q ss_pred EEEEEcCCCCCC----------HHHHHHHHHHHhhcCCc--eEEEEecCcccccchhh--hccce-eEEecCCCH-HHHH
Q 019145 157 KIIILDEADSMT----------EDAQNALRRTMETYSKV--TRFFFICNYISRIIEPL--ASRCA-KFRFKPLSE-EVMS 220 (345)
Q Consensus 157 ~iliiDE~~~l~----------~~~~~~l~~~le~~~~~--~~ii~~~n~~~~l~~~l--~~r~~-~i~~~~~~~-~~~~ 220 (345)
.+|++|+++.+- .-....|+-++...|+. -.+|++|++...+...+ ..-+. .++.+.++. +++.
T Consensus 600 siivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~ 679 (744)
T KOG0741|consen 600 SIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLL 679 (744)
T ss_pred eEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHH
Confidence 599999998762 23445555566554443 45666665544333322 22333 678888765 7777
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHh
Q 019145 221 SRVLHICNEEGLNLDAEALSTLSSI 245 (345)
Q Consensus 221 ~~l~~~~~~~~~~i~~~~~~~l~~~ 245 (345)
+++. ..++ ++++..+.+++.
T Consensus 680 ~vl~----~~n~-fsd~~~~~~~~~ 699 (744)
T KOG0741|consen 680 EVLE----ELNI-FSDDEVRAIAEQ 699 (744)
T ss_pred HHHH----HccC-CCcchhHHHHHH
Confidence 7773 2232 556666666544
No 278
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.62 E-value=2.8e-09 Score=95.07 Aligned_cols=135 Identities=24% Similarity=0.292 Sum_probs=69.5
Q ss_pred cccccHHHHHHHHHHHHcCC------------CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc--cch
Q 019145 62 DVAHQEEVVRVLTNTLETAN------------CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD--RGI 127 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~~------------~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~--~~~ 127 (345)
.+.|++.++..+.-.+-++. .-|+||.|.||+|||.+.+.+++-. ...+..++... .+.
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~-------pr~v~~~g~~~s~~gL 97 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLA-------PRSVYTSGKGSSAAGL 97 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT--------SSEEEEECCGSTCCCC
T ss_pred cCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhC-------CceEEECCCCcccCCc
Confidence 56688888776654443322 1259999999999999999775433 11111221110 000
Q ss_pred --HHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-------------CceEEEEec
Q 019145 128 --NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFFIC 192 (345)
Q Consensus 128 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-------------~~~~ii~~~ 192 (345)
...++.... ... ...+....++.+|++|||++.+..+....|.+.||... ..+.++.++
T Consensus 98 ta~~~~d~~~~--~~~----leaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~ 171 (331)
T PF00493_consen 98 TASVSRDPVTG--EWV----LEAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAA 171 (331)
T ss_dssp CEEECCCGGTS--SEC----EEE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE
T ss_pred cceeccccccc--eeE----EeCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHH
Confidence 000000000 000 00000112355799999999999999999999999632 345677777
Q ss_pred Cccc-------------ccchhhhccceeE
Q 019145 193 NYIS-------------RIIEPLASRCAKF 209 (345)
Q Consensus 193 n~~~-------------~l~~~l~~r~~~i 209 (345)
|+.. .+++.+.+||+.+
T Consensus 172 NP~~g~~~~~~~~~~ni~l~~~LLSRFDLi 201 (331)
T PF00493_consen 172 NPKFGRYDPNKSLSENINLPPPLLSRFDLI 201 (331)
T ss_dssp --TT--S-TTS-CGCCT-S-CCCHCC-SEE
T ss_pred hhhhhhcchhhhhHHhcccchhhHhhcCEE
Confidence 6543 3678899999944
No 279
>PF14516 AAA_35: AAA-like domain
Probab=98.59 E-value=4.7e-05 Score=68.19 Aligned_cols=235 Identities=14% Similarity=0.094 Sum_probs=130.1
Q ss_pred ccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc-----cchHHHH-HHHHH
Q 019145 63 VAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD-----RGINVVR-TKIKT 136 (345)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~ 136 (345)
.+.++.+-+.+.+.+... ...+.+.||..+|||++...+.+.+... +..++.++.... .+.+.+. .....
T Consensus 13 Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~---~~~~v~id~~~~~~~~~~~~~~f~~~~~~~ 88 (331)
T PF14516_consen 13 YIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ---GYRCVYIDLQQLGSAIFSDLEQFLRWFCEE 88 (331)
T ss_pred ccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC---CCEEEEEEeecCCCcccCCHHHHHHHHHHH
Confidence 445555666666666553 2358999999999999999999888443 444555554331 1111111 11111
Q ss_pred HHHhhhcCCC--------CCC-------------CCCCCCeEEEEEcCCCCCCH------HHHHHHHHHHhhcC-----C
Q 019145 137 FAAVAVGSGQ--------RRG-------------GYPCPPYKIIILDEADSMTE------DAQNALRRTMETYS-----K 184 (345)
Q Consensus 137 ~~~~~~~~~~--------~~~-------------~~~~~~~~iliiDE~~~l~~------~~~~~l~~~le~~~-----~ 184 (345)
.... ..... ..+ .....++-||+|||+|.+.. +....|+.+.+... .
T Consensus 89 i~~~-L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~ 167 (331)
T PF14516_consen 89 ISRQ-LKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQ 167 (331)
T ss_pred HHHH-cCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccc
Confidence 1100 00000 000 00123456999999998754 33444555555322 2
Q ss_pred ceEEEEecCcccccchhh-h---ccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 019145 185 VTRFFFICNYISRIIEPL-A---SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260 (345)
Q Consensus 185 ~~~ii~~~n~~~~l~~~l-~---~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~ 260 (345)
..++|++......+.... . ..+..+.+++.+.+|+...++ ..+..+++..++.|...++|.+.-.-..+..+
T Consensus 168 ~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~----~~~~~~~~~~~~~l~~~tgGhP~Lv~~~~~~l 243 (331)
T PF14516_consen 168 KLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQ----RYGLEFSQEQLEQLMDWTGGHPYLVQKACYLL 243 (331)
T ss_pred eEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHH----hhhccCCHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 455666654322222111 1 233468889999999988764 45677888899999999999997766555555
Q ss_pred HHHhCCCCCHHHHHHhhC-C--CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 019145 261 ARLFGSSITSKDLISVSG-V--IPPEVVEGLFAVCRSGDFDLANKEVNNIIAEG 311 (345)
Q Consensus 261 ~~~~~~~it~~~v~~~~~-~--~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g 311 (345)
+. ..++.+++.+... . ...+.+..+.+.+ . +-......+..++..|
T Consensus 244 ~~---~~~~~~~l~~~a~~~~~~~~~hL~~l~~~L-~-~~~~L~~~~~~il~~~ 292 (331)
T PF14516_consen 244 VE---EQITLEQLLEEAITDNGIYNDHLDRLLDRL-Q-QNPELLEAYQQILFSG 292 (331)
T ss_pred HH---ccCcHHHHHHHHHHhcccHHHHHHHHHHHH-c-cCHHHHHHHHHHHhCC
Confidence 53 3566665533321 1 1122344444444 1 2225566666666654
No 280
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.58 E-value=1.1e-06 Score=81.14 Aligned_cols=151 Identities=20% Similarity=0.254 Sum_probs=89.0
Q ss_pred cccccHHHHHHHHHHHHcCCC------------CcEEEeCCCCCCHHHHHHHHHHHhcCC---CCCCCceeeeecCCccc
Q 019145 62 DVAHQEEVVRVLTNTLETANC------------PHMLFYGPPGTGKTTTALAIAHQLFGP---ELYKSRVLELNASDDRG 126 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~~~------------~~lll~G~~G~GKT~la~~la~~l~~~---~~~~~~~~~~~~~~~~~ 126 (345)
.+.|+..++.++.-.+..|.. -|+||+|.||||||.+.+-+++..... .+.+...+.+.+.....
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~Kd 529 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKD 529 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeC
Confidence 567999999999888876532 249999999999999999888764100 00111111111110000
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-------------CceEEEEecC
Q 019145 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFFICN 193 (345)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-------------~~~~ii~~~n 193 (345)
-+ ...+.. ..+..-.++++|++|||+|++.......+...||.-+ ..+.+|.++|
T Consensus 530 --Pv---trEWTL-------EaGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIAAan 597 (854)
T KOG0477|consen 530 --PV---TREWTL-------EAGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAAN 597 (854)
T ss_pred --Cc---cceeee-------ccCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhhheecC
Confidence 00 000000 0111234577899999999998766666666666422 3456777776
Q ss_pred cc-------------cccchhhhccceeEE-----ecCCCHHHHHHHHH
Q 019145 194 YI-------------SRIIEPLASRCAKFR-----FKPLSEEVMSSRVL 224 (345)
Q Consensus 194 ~~-------------~~l~~~l~~r~~~i~-----~~~~~~~~~~~~l~ 224 (345)
+. -.+.+++++|+++++ +.|..++.+.+++-
T Consensus 598 PigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fVV 646 (854)
T KOG0477|consen 598 PIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFVV 646 (854)
T ss_pred CCCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHHH
Confidence 52 136788999998653 34444555555543
No 281
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.56 E-value=8.8e-06 Score=76.01 Aligned_cols=50 Identities=16% Similarity=0.275 Sum_probs=40.5
Q ss_pred CCCCccccccHHHHHHHHHHHHc------CCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLET------ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~------~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
-..|+++.|.++.+..+...+.. ...+.++|.||||+|||++++.|++.+
T Consensus 72 y~fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 72 YPAFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred ccchhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 34677999999999888777722 233447999999999999999999987
No 282
>PRK10536 hypothetical protein; Provisional
Probab=98.54 E-value=1.2e-06 Score=73.95 Aligned_cols=59 Identities=15% Similarity=0.168 Sum_probs=40.0
Q ss_pred cCcchhhh-hhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 46 QSSQPWVE-KYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 46 ~~~~~~~~-~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
...+|+.. ......+..+.+.......+..++... ..++++||+|||||+++.+++.+.
T Consensus 39 ~~~~p~~~~~~~~~~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 39 MGGVEAIGMARDSRDTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred hccCCccccchhhcCCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHH
Confidence 34455433 233334445556666666666677653 368999999999999999999964
No 283
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.54 E-value=1.4e-07 Score=77.22 Aligned_cols=48 Identities=25% Similarity=0.390 Sum_probs=32.9
Q ss_pred cccccHHHHHHHHHHHH---cCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC
Q 019145 62 DVAHQEEVVRVLTNTLE---TANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~---~~~~~~lll~G~~G~GKT~la~~la~~l~~~ 109 (345)
.++|+++.++.+...+. .+..++++++|++|+|||++++.+...+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 37899999999999883 2334558999999999999999998887443
No 284
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.52 E-value=4e-05 Score=70.26 Aligned_cols=203 Identities=19% Similarity=0.187 Sum_probs=118.5
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc-chHHHHHHHHHHHHhhhcCCCCC
Q 019145 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR-GINVVRTKIKTFAAVAVGSGQRR 148 (345)
Q Consensus 70 ~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 148 (345)
...+.+.+..... .++++||.+|||||+++.+.+.... .++.++..+.. ......+....+......
T Consensus 26 ~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~------~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~----- 93 (398)
T COG1373 26 LPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLE------EIIYINFDDLRLDRIELLDLLRAYIELKER----- 93 (398)
T ss_pred hHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCc------ceEEEEecchhcchhhHHHHHHHHHHhhcc-----
Confidence 3444444433333 5799999999999999888877622 13444433321 222222333333222111
Q ss_pred CCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCccc----ccchhhhccceeEEecCCCHHHHHH---
Q 019145 149 GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS----RIIEPLASRCAKFRFKPLSEEVMSS--- 221 (345)
Q Consensus 149 ~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~----~l~~~l~~r~~~i~~~~~~~~~~~~--- 221 (345)
+...+++||++.+.. -...+..+.+.... .++++++... .....+..|...+.+.|++-.|...
T Consensus 94 ------~~~yifLDEIq~v~~-W~~~lk~l~d~~~~--~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~ 164 (398)
T COG1373 94 ------EKSYIFLDEIQNVPD-WERALKYLYDRGNL--DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKG 164 (398)
T ss_pred ------CCceEEEecccCchh-HHHHHHHHHccccc--eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhcc
Confidence 345999999998863 44445555554333 4555554333 3455666787899999999988865
Q ss_pred ----------HHHHHHHHhCCCC----CH------HH-----HHHHHHhcC-CCHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 019145 222 ----------RVLHICNEEGLNL----DA------EA-----LSTLSSISQ-GDLRRAITYLQGAARLFGSSITSKDLIS 275 (345)
Q Consensus 222 ----------~l~~~~~~~~~~i----~~------~~-----~~~l~~~s~-g~~r~~~~~l~~~~~~~~~~it~~~v~~ 275 (345)
.+..+...-|.+- +. +. ...+++..+ -+...+...+..++...+..++...+..
T Consensus 165 ~~~~~~~~~~~f~~Yl~~GGfP~~v~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~k~i~~~l~~~~g~~~s~~~la~ 244 (398)
T COG1373 165 EEIEPSKLELLFEKYLETGGFPESVKADLSEKKLKEYLDTILKRDIIERGKIENADLMKRILRFLASNIGSPISYSSLAR 244 (398)
T ss_pred cccchhHHHHHHHHHHHhCCCcHHHhCcchhhHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHhhcCCccCHHHHHH
Confidence 4566666656541 11 11 112333333 2555556666677777788899998888
Q ss_pred hhCCCCHHHHHHHHHHHH
Q 019145 276 VSGVIPPEVVEGLFAVCR 293 (345)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~ 293 (345)
.++......+...++++.
T Consensus 245 ~l~~is~~Ti~~Yl~~le 262 (398)
T COG1373 245 ELKGISKDTIRKYLSYLE 262 (398)
T ss_pred HHhccchHHHHHHHHHHH
Confidence 884333666666666554
No 285
>PHA02774 E1; Provisional
Probab=98.52 E-value=1.1e-06 Score=81.92 Aligned_cols=137 Identities=22% Similarity=0.318 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHcCCC-CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceee-eecCCccchHHHHHHHHHHHHhhhcCC
Q 019145 68 EVVRVLTNTLETANC-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE-LNASDDRGINVVRTKIKTFAAVAVGSG 145 (345)
Q Consensus 68 ~~~~~l~~~l~~~~~-~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (345)
.....|+.+++.... ..++|+||||||||+++.+|++.+. ..++. +|.....- +.
T Consensus 419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~------G~vi~fvN~~s~Fw-------Lq---------- 475 (613)
T PHA02774 419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLK------GKVISFVNSKSHFW-------LQ---------- 475 (613)
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC------CCEEEEEECccccc-------cc----------
Confidence 345677778766543 3489999999999999999999982 22222 33211100 00
Q ss_pred CCCCCCCCCCeEEEEEcCCCCC-CHHHHHHHHHHHhhcC-------------CceEEEEecCccc---ccchhhhcccee
Q 019145 146 QRRGGYPCPPYKIIILDEADSM-TEDAQNALRRTMETYS-------------KVTRFFFICNYIS---RIIEPLASRCAK 208 (345)
Q Consensus 146 ~~~~~~~~~~~~iliiDE~~~l-~~~~~~~l~~~le~~~-------------~~~~ii~~~n~~~---~l~~~l~~r~~~ 208 (345)
...+.+++++||+-.- ..-....|..+++..+ ...++|+|+|..- .-.+.|.+|...
T Consensus 476 ------pl~d~ki~vlDD~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi~~ 549 (613)
T PHA02774 476 ------PLADAKIALLDDATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRITV 549 (613)
T ss_pred ------hhccCCEEEEecCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhhhEEE
Confidence 1124469999999322 1223346777776542 1256888887432 234667788887
Q ss_pred EEecC-------------CCHHHHHHHHHHHHHHhCCC
Q 019145 209 FRFKP-------------LSEEVMSSRVLHICNEEGLN 233 (345)
Q Consensus 209 i~~~~-------------~~~~~~~~~l~~~~~~~~~~ 233 (345)
++|+. ++....+.++++...+-.+.
T Consensus 550 f~F~n~~P~d~~G~P~f~ltd~~WKsFF~rlw~~LdL~ 587 (613)
T PHA02774 550 FEFPNPFPLDENGNPVFELTDANWKSFFERLWSQLDLS 587 (613)
T ss_pred EECCCCCCcCCCCCEeeeeCchhHHHHHHHHHHHcCCC
Confidence 77754 34577888888887765554
No 286
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.52 E-value=1.9e-07 Score=74.76 Aligned_cols=65 Identities=12% Similarity=0.287 Sum_probs=39.1
Q ss_pred CeEEEEEcCCCCC---CHHHHHHHHHHHhhcCCceEEEEec-Cc-ccccchhhhcc--ceeEEecCCCHHHHHHH
Q 019145 155 PYKIIILDEADSM---TEDAQNALRRTMETYSKVTRFFFIC-NY-ISRIIEPLASR--CAKFRFKPLSEEVMSSR 222 (345)
Q Consensus 155 ~~~iliiDE~~~l---~~~~~~~l~~~le~~~~~~~ii~~~-n~-~~~l~~~l~~r--~~~i~~~~~~~~~~~~~ 222 (345)
..++++|||+..+ ++...+.+..+++. + ..+|.+- .. ...+.+.+.+| +.++.+.+-+.+.+..-
T Consensus 95 ~~~liviDEIG~mEl~~~~F~~~v~~~l~s-~--~~vi~vv~~~~~~~~l~~i~~~~~~~i~~vt~~NRd~l~~~ 166 (168)
T PF03266_consen 95 SSDLIVIDEIGKMELKSPGFREAVEKLLDS-N--KPVIGVVHKRSDNPFLEEIKRRPDVKIFEVTEENRDALPEE 166 (168)
T ss_dssp CCHEEEE---STTCCC-CHHHHHHHHHHCT-T--SEEEEE--SS--SCCHHHHHTTTTSEEEE--TTTCCCHHHH
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHHHcC-C--CcEEEEEecCCCcHHHHHHHhCCCcEEEEeChhHHhhHhhh
Confidence 4569999999876 56778888999983 2 2244433 22 45678888888 55788887777666543
No 287
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.52 E-value=9.6e-07 Score=72.87 Aligned_cols=120 Identities=22% Similarity=0.294 Sum_probs=65.6
Q ss_pred HHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHH-------HHHHHhh
Q 019145 69 VVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI-------KTFAAVA 141 (345)
Q Consensus 69 ~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 141 (345)
....+...+..+ ....++.||||||||++++.+...+... +..++.+.+.. .....+.+.. ..+....
T Consensus 6 Q~~a~~~~l~~~-~~~~~l~G~aGtGKT~~l~~~~~~~~~~---g~~v~~~apT~-~Aa~~L~~~~~~~a~Ti~~~l~~~ 80 (196)
T PF13604_consen 6 QREAVRAILTSG-DRVSVLQGPAGTGKTTLLKALAEALEAA---GKRVIGLAPTN-KAAKELREKTGIEAQTIHSFLYRI 80 (196)
T ss_dssp HHHHHHHHHHCT-CSEEEEEESTTSTHHHHHHHHHHHHHHT---T--EEEEESSH-HHHHHHHHHHTS-EEEHHHHTTEE
T ss_pred HHHHHHHHHhcC-CeEEEEEECCCCCHHHHHHHHHHHHHhC---CCeEEEECCcH-HHHHHHHHhhCcchhhHHHHHhcC
Confidence 344444444443 2346899999999999999998877432 34444443332 2222232221 1111100
Q ss_pred hcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCccc
Q 019145 142 VGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (345)
Q Consensus 142 ~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~ 196 (345)
... .........+..+|||||+.+++......|+..+.. ....+|+++++..
T Consensus 81 ~~~-~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~Q 132 (196)
T PF13604_consen 81 PNG-DDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPNQ 132 (196)
T ss_dssp CCE-ECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TTS
T ss_pred Ccc-cccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcch
Confidence 000 000111134567999999999999998888888876 4567888886543
No 288
>PRK04132 replication factor C small subunit; Provisional
Probab=98.49 E-value=1e-07 Score=93.52 Aligned_cols=52 Identities=48% Similarity=0.967 Sum_probs=48.3
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHH
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTT 98 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~l 98 (345)
...||.++|||.+|+|++||+++++.|+.++..+..+|++|+||||+||+..
T Consensus 5 ~~~~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~~~i~h~l~~g~~g~~~cl~ 56 (846)
T PRK04132 5 LEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 56 (846)
T ss_pred hcccHHHhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEECCCCCCcccc
Confidence 3458999999999999999999999999999999999999999999999643
No 289
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.48 E-value=2.2e-05 Score=68.96 Aligned_cols=198 Identities=18% Similarity=0.153 Sum_probs=111.0
Q ss_pred ccccccHHHHHHHHHHHHcCC--CCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchH---------
Q 019145 61 KDVAHQEEVVRVLTNTLETAN--CPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN--------- 128 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~--~~~-lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~--------- 128 (345)
..+.+++..+..+...+.... .|+ ++|+|.+|||||.+++.+.+.. +.+.+.+++-+..+..
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~------n~~~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL------NLENVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc------CCcceeeehHHhccHHHHHHHHHHH
Confidence 456788999999998886643 344 6999999999999999999987 3333444432211111
Q ss_pred ----------------HHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC---HHHHHHHHHHHhhcCC-ceEE
Q 019145 129 ----------------VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT---EDAQNALRRTMETYSK-VTRF 188 (345)
Q Consensus 129 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~---~~~~~~l~~~le~~~~-~~~i 188 (345)
.+...+..+...... ...+..-+|++|.+|.+. ......++++-+-.+. ...+
T Consensus 80 ~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~-------t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~i 152 (438)
T KOG2543|consen 80 SQLADKDGDKVEGDAENFSDFIYLLVQWPAA-------TNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVI 152 (438)
T ss_pred hccCCCchhhhhhHHHHHHHHHHHHHhhHHh-------hccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEE
Confidence 111122222221110 011234589999999885 3344555544443232 4455
Q ss_pred EEecCcccccchh-hhccce-eEEecCCCHHHHHHHHHHHHH-HhCCCCCHHHHHHH----HHhcCCCHHHHHHHHHHHH
Q 019145 189 FFICNYISRIIEP-LASRCA-KFRFKPLSEEVMSSRVLHICN-EEGLNLDAEALSTL----SSISQGDLRRAITYLQGAA 261 (345)
Q Consensus 189 i~~~n~~~~l~~~-l~~r~~-~i~~~~~~~~~~~~~l~~~~~-~~~~~i~~~~~~~l----~~~s~g~~r~~~~~l~~~~ 261 (345)
+++.......... ....+. .++|+.++.+++..++.+--- +....+-...+..+ ...|+ |+..+...+...+
T Consensus 153 ils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~~~w 231 (438)
T KOG2543|consen 153 ILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACR-DVNELRSLISLAW 231 (438)
T ss_pred EEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHH
Confidence 5555433332221 122222 789999999999999864321 11111112223333 34455 9999888888777
Q ss_pred HHh-----CCCCCHHH
Q 019145 262 RLF-----GSSITSKD 272 (345)
Q Consensus 262 ~~~-----~~~it~~~ 272 (345)
... ++.|+..+
T Consensus 232 pky~epi~~~~i~~~d 247 (438)
T KOG2543|consen 232 PKYCEPITKGKIDPTD 247 (438)
T ss_pred HhhccccccCCCChhH
Confidence 544 33455555
No 290
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.46 E-value=2.6e-07 Score=68.32 Aligned_cols=74 Identities=26% Similarity=0.419 Sum_probs=45.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC--CCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPE--LYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiD 162 (345)
+.|+||||+|||++++.|++.+.... .....++..+..+ +....+ ....++++|
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~--------~~w~gY----------------~~q~vvi~D 56 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGD--------KFWDGY----------------QGQPVVIID 56 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCcc--------chhhcc----------------CCCcEEEEe
Confidence 57999999999999999999884221 0112222212211 111111 133599999
Q ss_pred CCCCCCHH----HHHHHHHHHhhc
Q 019145 163 EADSMTED----AQNALRRTMETY 182 (345)
Q Consensus 163 E~~~l~~~----~~~~l~~~le~~ 182 (345)
|+...... ....++++++..
T Consensus 57 D~~~~~~~~~~~~~~~l~~l~s~~ 80 (107)
T PF00910_consen 57 DFGQDNDGYNYSDESELIRLISSN 80 (107)
T ss_pred ecCccccccchHHHHHHHHHHhcC
Confidence 99887643 566677777643
No 291
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.45 E-value=3.3e-06 Score=72.80 Aligned_cols=164 Identities=15% Similarity=0.107 Sum_probs=89.9
Q ss_pred ccccHHHHHHHHHHH----HcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHH
Q 019145 63 VAHQEEVVRVLTNTL----ETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA 138 (345)
Q Consensus 63 ~~g~~~~~~~l~~~l----~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (345)
+.|..+..+.+..|+ ..|....+++.||.|+|||.++...... ......++-.+.+|+.-....-.+.+....+.
T Consensus 26 l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~ 104 (408)
T KOG2228|consen 26 LFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITRQLA 104 (408)
T ss_pred eeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHHHHH
Confidence 566555555555555 4467777999999999999987665555 22222344555666654332222223222222
Q ss_pred HhhhcCCCCC---------------CCCCCCC-eEEEEEcCCCCCCH-HHHHHHHHHHhh---cCCceEEEEec---Ccc
Q 019145 139 AVAVGSGQRR---------------GGYPCPP-YKIIILDEADSMTE-DAQNALRRTMET---YSKVTRFFFIC---NYI 195 (345)
Q Consensus 139 ~~~~~~~~~~---------------~~~~~~~-~~iliiDE~~~l~~-~~~~~l~~~le~---~~~~~~ii~~~---n~~ 195 (345)
.......... .+....+ .-+.|+||+|.+.. ..|-.|.++++- ...++.+|.+| +..
T Consensus 105 ~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~l 184 (408)
T KOG2228|consen 105 LELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDIL 184 (408)
T ss_pred HHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHH
Confidence 2211100000 0111122 24666778998854 445566666652 22334444444 334
Q ss_pred cccchhhhccce---eEEecCCCHHHHHHHHHHHH
Q 019145 196 SRIIEPLASRCA---KFRFKPLSEEVMSSRVLHIC 227 (345)
Q Consensus 196 ~~l~~~l~~r~~---~i~~~~~~~~~~~~~l~~~~ 227 (345)
+.+-+.+++|+. ++-+++.+-++...+.+...
T Consensus 185 E~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 185 ELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 567788999987 33445557788888877665
No 292
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.44 E-value=1.1e-06 Score=79.49 Aligned_cols=136 Identities=17% Similarity=0.230 Sum_probs=80.9
Q ss_pred cccccHHHHHHHHHHHHcCCCC------------cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHH
Q 019145 62 DVAHQEEVVRVLTNTLETANCP------------HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~~~~------------~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 129 (345)
.+.|+.++++++...+..|... |+||.|.|||.||.+.+-+-+-. ++-....+...+..-
T Consensus 332 SIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvs--------PIaVYTSGKGSSAAG 403 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVS--------PIAVYTSGKGSSAAG 403 (729)
T ss_pred hhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcC--------ceEEEecCCCccccc
Confidence 5669999999999998776422 58999999999999999886643 222122211111100
Q ss_pred HH-HHHHHH--HHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-------------CceEEEEecC
Q 019145 130 VR-TKIKTF--AAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFFICN 193 (345)
Q Consensus 130 ~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-------------~~~~ii~~~n 193 (345)
+. +.+..- .++-..+ +....++.+|++|||+|++..+..-++.+.||.-. ..+.++.++|
T Consensus 404 LTASV~RD~~tReFylEG----GAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAAN 479 (729)
T KOG0481|consen 404 LTASVIRDPSTREFYLEG----GAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAAN 479 (729)
T ss_pred ceeeEEecCCcceEEEec----ceEEEecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcC
Confidence 00 000000 0000000 11123566899999999999988888888888532 2334444455
Q ss_pred ccc-------------ccchhhhccceeE
Q 019145 194 YIS-------------RIIEPLASRCAKF 209 (345)
Q Consensus 194 ~~~-------------~l~~~l~~r~~~i 209 (345)
+.. .+.+.+++||+.+
T Consensus 480 pvfGRyDd~Kt~~dNIDf~~TILSRFDmI 508 (729)
T KOG0481|consen 480 PVFGRYDDTKTGEDNIDFMPTILSRFDMI 508 (729)
T ss_pred CccccccccCCcccccchhhhHhhhccEE
Confidence 432 1457888998843
No 293
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.42 E-value=2.9e-05 Score=74.91 Aligned_cols=191 Identities=17% Similarity=0.171 Sum_probs=113.7
Q ss_pred hhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHH
Q 019145 54 KYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (345)
Q Consensus 54 ~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (345)
-.+|......+.++.....+... ....-++|+-|.|.||||++..++... .......-+.++.+++.......-.
T Consensus 12 ~~~P~~~~~~v~R~rL~~~L~~~---~~~RL~li~APAGfGKttl~aq~~~~~--~~~~~v~Wlslde~dndp~rF~~yL 86 (894)
T COG2909 12 LVRPVRPDNYVVRPRLLDRLRRA---NDYRLILISAPAGFGKTTLLAQWRELA--ADGAAVAWLSLDESDNDPARFLSYL 86 (894)
T ss_pred cCCCCCcccccccHHHHHHHhcC---CCceEEEEeCCCCCcHHHHHHHHHHhc--CcccceeEeecCCccCCHHHHHHHH
Confidence 35566666677777776665422 222337999999999999999998733 2222333334444444333333323
Q ss_pred HHHHHHhhhcCCC-------CCCC--------------CCCCCeEEEEEcCCCCCCHHH-HHHHHHHHhhcCCceEEEEe
Q 019145 134 IKTFAAVAVGSGQ-------RRGG--------------YPCPPYKIIILDEADSMTEDA-QNALRRTMETYSKVTRFFFI 191 (345)
Q Consensus 134 ~~~~~~~~~~~~~-------~~~~--------------~~~~~~~iliiDE~~~l~~~~-~~~l~~~le~~~~~~~ii~~ 191 (345)
+.......+..+. +... ....++-.+|+||.|..+... ...+..+++..|+++.+|++
T Consensus 87 i~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~ 166 (894)
T COG2909 87 IAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVT 166 (894)
T ss_pred HHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEE
Confidence 3222211111100 0000 012234589999999997654 45677778888999999999
Q ss_pred cCccccc-chhhhccceeEEec----CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHH
Q 019145 192 CNYISRI-IEPLASRCAKFRFK----PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRR 252 (345)
Q Consensus 192 ~n~~~~l-~~~l~~r~~~i~~~----~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~ 252 (345)
|.....+ ...++=+...+++. .++.+|..+++... -+.+++...++.|.++++|-+..
T Consensus 167 SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~---~~l~Ld~~~~~~L~~~teGW~~a 229 (894)
T COG2909 167 SRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDR---GSLPLDAADLKALYDRTEGWAAA 229 (894)
T ss_pred eccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHc---CCCCCChHHHHHHHhhcccHHHH
Confidence 8654432 23333333333332 35678888888433 24889999999999999996544
No 294
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.39 E-value=1.2e-06 Score=78.72 Aligned_cols=119 Identities=15% Similarity=0.147 Sum_probs=65.4
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc-------cchHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 019145 81 NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD-------RGINVVRTKIKTFAAVAVGSGQRRGGYPC 153 (345)
Q Consensus 81 ~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (345)
.+.+++|||++|+|||++.-.+...+..+.-....|..+-..-- ...+.+......+ .
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l---------------~ 125 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADEL---------------A 125 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHH---------------H
Confidence 34569999999999999999999887332111111111100000 0000011111111 1
Q ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHhhc-CCceEEEEecCcccc--------------cchhhhccceeEEecCC
Q 019145 154 PPYKIIILDEADSMTEDAQNALRRTMETY-SKVTRFFFICNYISR--------------IIEPLASRCAKFRFKPL 214 (345)
Q Consensus 154 ~~~~iliiDE~~~l~~~~~~~l~~~le~~-~~~~~ii~~~n~~~~--------------l~~~l~~r~~~i~~~~~ 214 (345)
....+|++||++--.....-.|.++++.. ...+++|+|+|.+.. ..+.|.++|.++++...
T Consensus 126 ~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv~ld~~ 201 (362)
T PF03969_consen 126 KESRLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVVELDGG 201 (362)
T ss_pred hcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEEEecCC
Confidence 24469999999876554443333444332 246677888875432 23556778888877665
No 295
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.36 E-value=3.5e-06 Score=80.78 Aligned_cols=110 Identities=17% Similarity=0.177 Sum_probs=63.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHh--------------------hhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV--------------------AVG 143 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~ 143 (345)
..+|+|+|||||||++..+...+..........+.+.++.......+.+.+...... ..+
T Consensus 169 ~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlLg 248 (615)
T PRK10875 169 ISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLLG 248 (615)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHhC
Confidence 379999999999999999887763211111123444454433434443333211000 000
Q ss_pred CCCCCC-----CCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCccc
Q 019145 144 SGQRRG-----GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (345)
Q Consensus 144 ~~~~~~-----~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~ 196 (345)
...... ....-+.++|||||+.+++-.....|++.+ +..+++|++++...
T Consensus 249 ~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al---~~~~rlIlvGD~~Q 303 (615)
T PRK10875 249 AQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDAL---PPHARVIFLGDRDQ 303 (615)
T ss_pred cCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhc---ccCCEEEEecchhh
Confidence 000000 001123479999999999988877777765 56788999986543
No 296
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.29 E-value=8.1e-06 Score=80.32 Aligned_cols=122 Identities=20% Similarity=0.162 Sum_probs=67.1
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHH-------HHHHH
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK-------IKTFA 138 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 138 (345)
.+.....+..... .+.++++|+||||||++++++...+..... ...++ +-++.......+.+. +..+.
T Consensus 325 ~~~Q~~Ai~~~~~---~~~~iitGgpGTGKTt~l~~i~~~~~~~~~-~~~v~-l~ApTg~AA~~L~e~~g~~a~Tih~lL 399 (720)
T TIGR01448 325 SEEQKQALDTAIQ---HKVVILTGGPGTGKTTITRAIIELAEELGG-LLPVG-LAAPTGRAAKRLGEVTGLTASTIHRLL 399 (720)
T ss_pred CHHHHHHHHHHHh---CCeEEEECCCCCCHHHHHHHHHHHHHHcCC-CceEE-EEeCchHHHHHHHHhcCCccccHHHHh
Confidence 3444445554432 235799999999999999999887732210 12233 333332222222221 11111
Q ss_pred HhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcc
Q 019145 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (345)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~ 195 (345)
..................++|||||+.+++......|++.+ +...++|++++..
T Consensus 400 ~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~~~~~~Ll~~~---~~~~rlilvGD~~ 453 (720)
T TIGR01448 400 GYGPDTFRHNHLEDPIDCDLLIVDESSMMDTWLALSLLAAL---PDHARLLLVGDTD 453 (720)
T ss_pred hccCCccchhhhhccccCCEEEEeccccCCHHHHHHHHHhC---CCCCEEEEECccc
Confidence 11110000000001134679999999999988877777655 4567899998643
No 297
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.29 E-value=3.9e-06 Score=85.45 Aligned_cols=149 Identities=19% Similarity=0.298 Sum_probs=101.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCC---CCCCeEEEE
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGY---PCPPYKIII 160 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ili 160 (345)
++|+-||+.+|||+++.-+++.. +-.|+.+|...-... .+.+..+.....++-....+. ...+..-|+
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~t------ghkfVRINNHEHTdl---qeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWIV 960 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARET------GHKFVRINNHEHTDL---QEYIGTYVTDDDGSLSFKEGVLVEALRRGYWIV 960 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHh------CccEEEecCcccchH---HHHhhceeecCCCceeeehhHHHHHHhcCcEEE
Confidence 48999999999999999999998 667888876543222 222222221111100000000 012345899
Q ss_pred EcCCCCCCHHHHHHHHHHHhhcC--------------CceEEEEecCcc------cccchhhhccceeEEecCCCHHHHH
Q 019145 161 LDEADSMTEDAQNALRRTMETYS--------------KVTRFFFICNYI------SRIIEPLASRCAKFRFKPLSEEVMS 220 (345)
Q Consensus 161 iDE~~~l~~~~~~~l~~~le~~~--------------~~~~ii~~~n~~------~~l~~~l~~r~~~i~~~~~~~~~~~ 220 (345)
+||+...+.++.++|.+++++.. ++..+..|.|++ ..+.++++.|+-.++|...+.+++.
T Consensus 961 LDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFlE~hFddipedEle 1040 (4600)
T COG5271 961 LDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFLEMHFDDIPEDELE 1040 (4600)
T ss_pred eeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhHhhhcccCcHHHHH
Confidence 99999999999999999998532 344455555654 3478899999999999999999999
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhc
Q 019145 221 SRVLHICNEEGLNLDAEALSTLSSIS 246 (345)
Q Consensus 221 ~~l~~~~~~~~~~i~~~~~~~l~~~s 246 (345)
.++..+| .+.+..+..|++..
T Consensus 1041 ~ILh~rc-----~iapSyakKiVeVy 1061 (4600)
T COG5271 1041 EILHGRC-----EIAPSYAKKIVEVY 1061 (4600)
T ss_pred HHHhccC-----ccCHHHHHHHHHHH
Confidence 9997655 46666666666543
No 298
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.28 E-value=4.9e-05 Score=65.52 Aligned_cols=151 Identities=17% Similarity=0.225 Sum_probs=90.1
Q ss_pred ccccHHHHHHH---HHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHH
Q 019145 63 VAHQEEVVRVL---TNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139 (345)
Q Consensus 63 ~~g~~~~~~~l---~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (345)
++--+++++.+ .+.+... ..|++|.|.+|+||+++++..+.-. +..++.+......+..+.++-++....
T Consensus 10 lVlf~~ai~hi~ri~RvL~~~-~Gh~LLvG~~GsGr~sl~rLaa~i~------~~~~~~i~~~~~y~~~~f~~dLk~~~~ 82 (268)
T PF12780_consen 10 LVLFDEAIEHIARISRVLSQP-RGHALLVGVGGSGRQSLARLAAFIC------GYEVFQIEITKGYSIKDFKEDLKKALQ 82 (268)
T ss_dssp ----HHHHHHHHHHHHHHCST-TEEEEEECTTTSCHHHHHHHHHHHT------TEEEE-TTTSTTTHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHHcCC-CCCeEEecCCCccHHHHHHHHHHHh------ccceEEEEeeCCcCHHHHHHHHHHHHH
Confidence 44455555544 4444443 3579999999999999999877765 677777777666666666666665544
Q ss_pred hhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHH-----------------------------------------H-
Q 019145 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALR-----------------------------------------R- 177 (345)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~-----------------------------------------~- 177 (345)
..... ++..+++++|.+-......+.+. +
T Consensus 83 ~ag~~---------~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~ 153 (268)
T PF12780_consen 83 KAGIK---------GKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEF 153 (268)
T ss_dssp HHHCS----------S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHH
T ss_pred HHhcc---------CCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHH
Confidence 33221 24457888886554322111111 1
Q ss_pred HHhhcCCceEEEEecCccc-------ccchhhhccceeEEecCCCHHHHHHHHHHHHHH
Q 019145 178 TMETYSKVTRFFFICNYIS-------RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE 229 (345)
Q Consensus 178 ~le~~~~~~~ii~~~n~~~-------~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~ 229 (345)
+++....+..+|++-++.. ...|++.+.|.+..|.+.+.+-+..+-....+.
T Consensus 154 F~~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~~ctIdW~~~W~~eaL~~Va~~~l~~ 212 (268)
T PF12780_consen 154 FIERVRKNLHIVLCMSPVGPNFRDRCRSFPALVNCCTIDWFDPWPEEALLSVANKFLSD 212 (268)
T ss_dssp HHHHHCCCEEEEEEESTTTTCCCHHHHHHCCHHHHSEEEEEES--HHHHHHHHHHHCCH
T ss_pred HHHHHHhheeEEEEECCCCchHHHHHHhCcchhcccEEEeCCcCCHHHHHHHHHHHHHh
Confidence 1122235666776643322 246788889999999999999988887766554
No 299
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.28 E-value=1e-05 Score=77.40 Aligned_cols=121 Identities=17% Similarity=0.219 Sum_probs=66.8
Q ss_pred HHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCC-CCceeeeecCCccchHHHHHHHHHHH---------
Q 019145 69 VVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELY-KSRVLELNASDDRGINVVRTKIKTFA--------- 138 (345)
Q Consensus 69 ~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 138 (345)
....+...+.. +..+|+|+|||||||++..+...+...... ...-+.+.++.......+.+.+....
T Consensus 150 Qk~A~~~al~~---~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~~~~ 226 (586)
T TIGR01447 150 QKVAVALALKS---NFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAAEAL 226 (586)
T ss_pred HHHHHHHHhhC---CeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccchhh
Confidence 33344444442 347999999999999999988776321110 11123344444333333333322210
Q ss_pred ---------------HhhhcCCCCC-CCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcc
Q 019145 139 ---------------AVAVGSGQRR-GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (345)
Q Consensus 139 ---------------~~~~~~~~~~-~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~ 195 (345)
.......... ......+.++|||||+.+++......|++.+ +..+++|++++..
T Consensus 227 ~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~~l~~~ll~al---~~~~rlIlvGD~~ 296 (586)
T TIGR01447 227 IAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDLPLMAKLLKAL---PPNTKLILLGDKN 296 (586)
T ss_pred hhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCHHHHHHHHHhc---CCCCEEEEECChh
Confidence 0000000000 0001124679999999999988877777665 5678899998654
No 300
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=98.26 E-value=2.3e-06 Score=64.95 Aligned_cols=27 Identities=41% Similarity=0.646 Sum_probs=24.2
Q ss_pred CCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 80 ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 80 ~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
...||+|++|.|||||||++..+|...
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHh
Confidence 346789999999999999999999776
No 301
>PHA02624 large T antigen; Provisional
Probab=98.26 E-value=8e-06 Score=76.59 Aligned_cols=116 Identities=21% Similarity=0.244 Sum_probs=69.9
Q ss_pred HHHHHHHHcCCCC-cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCC
Q 019145 71 RVLTNTLETANCP-HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149 (345)
Q Consensus 71 ~~l~~~l~~~~~~-~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (345)
..++.++..-... .++|+||||||||+++.+|++.+ +..++.++++..... .....
T Consensus 419 ~~lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L------~G~vlsVNsPt~ks~--------FwL~p--------- 475 (647)
T PHA02624 419 DILKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLC------GGKSLNVNCPPDKLN--------FELGC--------- 475 (647)
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHc------CCeEEEeeCCcchhH--------HHhhh---------
Confidence 3344444443333 37999999999999999999998 344555665542221 10100
Q ss_pred CCCCCCeEEEEEcCCCCC-------CH----HHHHHHHHHHhhc-C-------------CceEEEEecCcccccchhhhc
Q 019145 150 GYPCPPYKIIILDEADSM-------TE----DAQNALRRTMETY-S-------------KVTRFFFICNYISRIIEPLAS 204 (345)
Q Consensus 150 ~~~~~~~~iliiDE~~~l-------~~----~~~~~l~~~le~~-~-------------~~~~ii~~~n~~~~l~~~l~~ 204 (345)
..+..++++|++-.- ++ +....|+..++.. + .-.++|+|+|. ..++..+.-
T Consensus 476 ---l~D~~~~l~dD~t~~~~~~~~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~ 551 (647)
T PHA02624 476 ---AIDQFMVVFEDVKGQPADNKDLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA 551 (647)
T ss_pred ---hhhceEEEeeeccccccccccCCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH
Confidence 113459999998432 11 2235677777654 1 11335667765 457788888
Q ss_pred cce-eEEecC
Q 019145 205 RCA-KFRFKP 213 (345)
Q Consensus 205 r~~-~i~~~~ 213 (345)
|+. ++.|.+
T Consensus 552 Rf~~~~~F~~ 561 (647)
T PHA02624 552 RFAKVLDFKP 561 (647)
T ss_pred HHHHhccccc
Confidence 876 677754
No 302
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.26 E-value=0.0002 Score=64.65 Aligned_cols=106 Identities=13% Similarity=0.203 Sum_probs=63.6
Q ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHhhc------CCceEEEEecCcc---cccchhhhcc-ceeEEecCCCHHHHHHHHH
Q 019145 155 PYKIIILDEADSMTEDAQNALRRTMETY------SKVTRFFFICNYI---SRIIEPLASR-CAKFRFKPLSEEVMSSRVL 224 (345)
Q Consensus 155 ~~~iliiDE~~~l~~~~~~~l~~~le~~------~~~~~ii~~~n~~---~~l~~~l~~r-~~~i~~~~~~~~~~~~~l~ 224 (345)
.+.||+||++..-... .+.+...+.+. ..-..+||.|+.. ..+.+++-.+ +..+.+...+.+..++++.
T Consensus 148 ~~PVVVIdnF~~k~~~-~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~ 226 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEE-NDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVL 226 (431)
T ss_pred cCCEEEEcchhccCcc-cchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHH
Confidence 3579999998665433 23333222211 1234566666443 3355555554 4478899999999999998
Q ss_pred HHHHHhC-C-------------------CCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019145 225 HICNEEG-L-------------------NLDAEALSTLSSISQGDLRRAITYLQGAA 261 (345)
Q Consensus 225 ~~~~~~~-~-------------------~i~~~~~~~l~~~s~g~~r~~~~~l~~~~ 261 (345)
..+.... . ......++..++.-||-+.++-...+++.
T Consensus 227 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRik 283 (431)
T PF10443_consen 227 SQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIK 283 (431)
T ss_pred HHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 8886531 1 12455566677777777766555555544
No 303
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.23 E-value=1.1e-05 Score=60.22 Aligned_cols=52 Identities=29% Similarity=0.402 Sum_probs=36.0
Q ss_pred cccccHHHHHHHHHHH----HcCCC--Cc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCC
Q 019145 62 DVAHQEEVVRVLTNTL----ETANC--PH-MLFYGPPGTGKTTTALAIAHQLFGPELYK 113 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l----~~~~~--~~-lll~G~~G~GKT~la~~la~~l~~~~~~~ 113 (345)
.+.||+-+.+.+.+.+ ....+ |- +-|+|++|||||.+++.||+.+...+..+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S 84 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKS 84 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCC
Confidence 5678876665555444 33322 21 46999999999999999999987554433
No 304
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.17 E-value=4.9e-05 Score=77.89 Aligned_cols=132 Identities=16% Similarity=0.231 Sum_probs=91.0
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcC--CCC-C-CC---CCCCC
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS--GQR-R-GG---YPCPP 155 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~-~~---~~~~~ 155 (345)
..++|.|.||+|||+++.++|+.. +...+.+|-++....-++ + ....+.. +.. . .. ....+
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~t------G~kliRINLSeQTdL~DL---f---Gsd~Pve~~Gef~w~dapfL~amr~ 1611 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKT------GKKLIRINLSEQTDLCDL---F---GSDLPVEEGGEFRWMDAPFLHAMRD 1611 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHh------cCceEEeeccccchHHHH---h---CCCCCcccCceeEecccHHHHHhhc
Confidence 359999999999999999999998 667777877664332211 1 1110000 000 0 00 01134
Q ss_pred eEEEEEcCCCCCCHHHHHHHHHHHhhcC--------------CceEEEEecCc------ccccchhhhccceeEEecCCC
Q 019145 156 YKIIILDEADSMTEDAQNALRRTMETYS--------------KVTRFFFICNY------ISRIIEPLASRCAKFRFKPLS 215 (345)
Q Consensus 156 ~~iliiDE~~~l~~~~~~~l~~~le~~~--------------~~~~ii~~~n~------~~~l~~~l~~r~~~i~~~~~~ 215 (345)
..-|++||+...+..+.+.|...++.+. ++.++..+-|+ ...+++.+..|+.++.+..++
T Consensus 1612 G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFsvV~~d~lt 1691 (4600)
T COG5271 1612 GGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFSVVKMDGLT 1691 (4600)
T ss_pred CCEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhheEEecccc
Confidence 5699999999999999999998887543 34454444443 345899999999999999999
Q ss_pred HHHHHHHHHHH
Q 019145 216 EEVMSSRVLHI 226 (345)
Q Consensus 216 ~~~~~~~l~~~ 226 (345)
.+++..+....
T Consensus 1692 ~dDi~~Ia~~~ 1702 (4600)
T COG5271 1692 TDDITHIANKM 1702 (4600)
T ss_pred cchHHHHHHhh
Confidence 99999887543
No 305
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.13 E-value=8.9e-05 Score=66.36 Aligned_cols=144 Identities=15% Similarity=0.200 Sum_probs=76.1
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHhc-CCCCCCCceeeeecCCccchHHHHHHHHHHHHh---hhcCCCCC-----CCCC
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQLF-GPELYKSRVLELNASDDRGINVVRTKIKTFAAV---AVGSGQRR-----GGYP 152 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-----~~~~ 152 (345)
...+.|.||+|+||||++..+|.... ...-....++..+........ .+..+... +......+ ....
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~E----QLk~Ya~im~vp~~vv~~~~el~~ai~~ 278 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVE----QLKTYADIMGVPLEVVYSPKELAEAIEA 278 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHH----HHHHHHHHhCCceEEecCHHHHHHHHHH
Confidence 34589999999999998888888875 233334455555554322222 22222111 11100000 0001
Q ss_pred CCCeEEEEEcCCCCCC--HHHHHHHHHHHhhc-CCceEEEEecCcccccchhhhccce-----eEEecCCCHHHHHHHHH
Q 019145 153 CPPYKIIILDEADSMT--EDAQNALRRTMETY-SKVTRFFFICNYISRIIEPLASRCA-----KFRFKPLSEEVMSSRVL 224 (345)
Q Consensus 153 ~~~~~iliiDE~~~l~--~~~~~~l~~~le~~-~~~~~ii~~~n~~~~l~~~l~~r~~-----~i~~~~~~~~~~~~~l~ 224 (345)
...+++|+||=+++=. ......|..++... +-.+.+++.++....-.+++..++. .+-|.++++.....-+-
T Consensus 279 l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~~I~TKlDET~s~G~~~ 358 (407)
T COG1419 279 LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDGLIFTKLDETTSLGNLF 358 (407)
T ss_pred hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCcceeEEEcccccCchhHHH
Confidence 2356799999887643 34456666666643 3455667766666555555555543 34555555543333333
Q ss_pred HHHHH
Q 019145 225 HICNE 229 (345)
Q Consensus 225 ~~~~~ 229 (345)
..+..
T Consensus 359 s~~~e 363 (407)
T COG1419 359 SLMYE 363 (407)
T ss_pred HHHHH
Confidence 33333
No 306
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=98.13 E-value=1.3e-05 Score=72.81 Aligned_cols=124 Identities=18% Similarity=0.263 Sum_probs=68.1
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHH--HHHHHHHHHhhhc
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVV--RTKIKTFAAVAVG 143 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 143 (345)
|..+...+.+.+....+.++++.||.|||||++++++.+.+... + ..+.+.++.......+ ...+..+...+..
T Consensus 6 Q~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~---~-~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~ 81 (364)
T PF05970_consen 6 QRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR---G-KKVLVTAPTGIAAFNIPGGRTIHSFFGIPIN 81 (364)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc---c-ceEEEecchHHHHHhccCCcchHHhcCcccc
Confidence 45566666666666666678999999999999999999887331 1 1222222221111111 0111111111111
Q ss_pred CCCC---------CCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhh---------cCCceEEEEecC
Q 019145 144 SGQR---------RGGYPCPPYKIIILDEADSMTEDAQNALRRTMET---------YSKVTRFFFICN 193 (345)
Q Consensus 144 ~~~~---------~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~---------~~~~~~ii~~~n 193 (345)
.... .........++|||||+.+++......+-..+.. +-+...+|+.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~lIiDEism~~~~~l~~i~~~lr~i~~~~~~~~pFGG~~vil~GD 149 (364)
T PF05970_consen 82 NNEKSQCKISKNSRLRERLRKADVLIIDEISMVSADMLDAIDRRLRDIRKSKDSDKPFGGKQVILFGD 149 (364)
T ss_pred ccccccccccccchhhhhhhhheeeecccccchhHHHHHHHHHhhhhhhcccchhhhcCcceEEeehh
Confidence 1100 0011223457999999999998877766544431 223456677664
No 307
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.12 E-value=0.001 Score=59.62 Aligned_cols=75 Identities=12% Similarity=0.105 Sum_probs=48.8
Q ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHhhcC--CceEEEEecCccc---------------ccchhhhcc-ce-eEEecCCC
Q 019145 155 PYKIIILDEADSMTEDAQNALRRTMETYS--KVTRFFFICNYIS---------------RIIEPLASR-CA-KFRFKPLS 215 (345)
Q Consensus 155 ~~~iliiDE~~~l~~~~~~~l~~~le~~~--~~~~ii~~~n~~~---------------~l~~~l~~r-~~-~i~~~~~~ 215 (345)
.+-||+|||+|+++++....+++.+...- +++.+|++.+... ........+ ++ .+.+++++
T Consensus 172 ~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~~~lP~~~ 251 (325)
T PF07693_consen 172 KRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKIIQVPFSLPPPS 251 (325)
T ss_pred ceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhhcCeEEEeCCCC
Confidence 45689999999998876666665554322 5677777764321 111222222 23 57889999
Q ss_pred HHHHHHHHHHHHHH
Q 019145 216 EEVMSSRVLHICNE 229 (345)
Q Consensus 216 ~~~~~~~l~~~~~~ 229 (345)
..++..++...+..
T Consensus 252 ~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 252 PSDLERYLNELLES 265 (325)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888887554
No 308
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.12 E-value=1.3e-05 Score=72.59 Aligned_cols=147 Identities=12% Similarity=0.182 Sum_probs=75.0
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCC---CCCCCceeeeecCCccchHHHHHHHHHHHHh---hhcCCCCC-----CCC
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGP---ELYKSRVLELNASDDRGINVVRTKIKTFAAV---AVGSGQRR-----GGY 151 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-----~~~ 151 (345)
..++|+||+|+||||++..+|..+... ......++..++........ +..+... +....... ...
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ----L~~~a~~lgvpv~~~~~~~~l~~~L~ 250 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ----IQTYGDIMGIPVKAIESFKDLKEEIT 250 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH----HHHHhhcCCcceEeeCcHHHHHHHHH
Confidence 347999999999999999999876321 12233344444322212111 2222211 11000000 001
Q ss_pred CCCCeEEEEEcCCCCCCHH--HHHHHHHHHhhcCC--ceEEEEecCcccccchhhhccc-----eeEEecCCCHHHHHHH
Q 019145 152 PCPPYKIIILDEADSMTED--AQNALRRTMETYSK--VTRFFFICNYISRIIEPLASRC-----AKFRFKPLSEEVMSSR 222 (345)
Q Consensus 152 ~~~~~~iliiDE~~~l~~~--~~~~l~~~le~~~~--~~~ii~~~n~~~~l~~~l~~r~-----~~i~~~~~~~~~~~~~ 222 (345)
...++++|+||.++..+.+ ....+..+++.... .+.+++.++....-...+..++ .-+-|..++...-...
T Consensus 251 ~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TKlDet~~~G~ 330 (388)
T PRK12723 251 QSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDETTCVGN 330 (388)
T ss_pred HhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeccCCCcchH
Confidence 1246789999999988754 34566666664332 4555555543322222333322 2455666666555555
Q ss_pred HHHHHHHhCCC
Q 019145 223 VLHICNEEGLN 233 (345)
Q Consensus 223 l~~~~~~~~~~ 233 (345)
+-..+...+++
T Consensus 331 ~l~~~~~~~~P 341 (388)
T PRK12723 331 LISLIYEMRKE 341 (388)
T ss_pred HHHHHHHHCCC
Confidence 54544444443
No 309
>PRK04296 thymidine kinase; Provisional
Probab=98.11 E-value=2.7e-05 Score=63.89 Aligned_cols=91 Identities=18% Similarity=0.219 Sum_probs=51.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC-Cccc-----------------hHHHHHHHHHHHHhhhcCCC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS-DDRG-----------------INVVRTKIKTFAAVAVGSGQ 146 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~-~~~~-----------------~~~~~~~~~~~~~~~~~~~~ 146 (345)
.+++||+|+||||++..++..+... +..++.+.+. +.+. .....+.+..+..
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~---g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~------- 74 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEER---GMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE------- 74 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHc---CCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-------
Confidence 5899999999999999988877332 1222222211 1000 0001111111111
Q ss_pred CCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEec
Q 019145 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 147 ~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~ 192 (345)
...++++|+|||++.++.+....+.+.+.. ....+|+++
T Consensus 75 -----~~~~~dvviIDEaq~l~~~~v~~l~~~l~~--~g~~vi~tg 113 (190)
T PRK04296 75 -----EGEKIDCVLIDEAQFLDKEQVVQLAEVLDD--LGIPVICYG 113 (190)
T ss_pred -----hCCCCCEEEEEccccCCHHHHHHHHHHHHH--cCCeEEEEe
Confidence 113567999999999987765556666543 345566665
No 310
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=98.09 E-value=0.00023 Score=59.97 Aligned_cols=138 Identities=14% Similarity=0.105 Sum_probs=72.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc---------------cchHHHHHHHHHHHHhhhcCCCCC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD---------------RGINVVRTKIKTFAAVAVGSGQRR 148 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~ 148 (345)
++++.|++|+|||+++..+...+.. .+ ..++-+..... ...+.+...+............+.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~-~f--~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~ 91 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRH-KF--DHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS 91 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcc-cC--CEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 5899999999999999999877622 11 11111111110 001111111111111000000000
Q ss_pred CCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhh-cCCceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHH
Q 019145 149 GGYPCPPYKIIILDEADSMTEDAQNALRRTMET-YSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225 (345)
Q Consensus 149 ~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~-~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~ 225 (345)
......+..+||+||+..-. -..+.+..++.. +.-++.+|+.+-....+++.++.-...+-+-+.+..++..+++.
T Consensus 92 ~~~k~~~~~LiIlDD~~~~~-~k~~~l~~~~~~gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~~s~~dl~~i~~~ 168 (241)
T PF04665_consen 92 PQKKNNPRFLIILDDLGDKK-LKSKILRQFFNNGRHYNISIIFLSQSYFHLPPNIRSNIDYFIIFNNSKRDLENIYRN 168 (241)
T ss_pred cccCCCCCeEEEEeCCCCch-hhhHHHHHHHhcccccceEEEEEeeecccCCHHHhhcceEEEEecCcHHHHHHHHHh
Confidence 01112456799999986521 122335555543 23467788888888889999988777444335677776655543
No 311
>PTZ00202 tuzin; Provisional
Probab=98.07 E-value=0.0002 Score=64.90 Aligned_cols=51 Identities=16% Similarity=0.264 Sum_probs=42.7
Q ss_pred CCCCCccccccHHHHHHHHHHHHcCCC---CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 56 RPKQVKDVAHQEEVVRVLTNTLETANC---PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~~~~---~~lll~G~~G~GKT~la~~la~~l 106 (345)
-|....+++|++.....+...+..... ..+.|+||+|||||++++.+...+
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l 310 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE 310 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC
Confidence 566788999999999999998865322 236999999999999999999876
No 312
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=98.06 E-value=4.3e-05 Score=60.13 Aligned_cols=51 Identities=12% Similarity=0.129 Sum_probs=37.1
Q ss_pred CCeEEEEEcCCCCCCH---HHHHHHHHHHhhcCCceEEEEecCcccccchhhhccce
Q 019145 154 PPYKIIILDEADSMTE---DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207 (345)
Q Consensus 154 ~~~~iliiDE~~~l~~---~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~ 207 (345)
..+++||+||+...-. -..+.+++++++.|....+|+|++.. ++.+....+
T Consensus 94 ~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~---p~~l~e~AD 147 (159)
T cd00561 94 GEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA---PKELIEAAD 147 (159)
T ss_pred CCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC---CHHHHHhCc
Confidence 4678999999876521 23456888999999999999999763 445555554
No 313
>PRK13695 putative NTPase; Provisional
Probab=98.04 E-value=4.5e-05 Score=61.73 Aligned_cols=70 Identities=14% Similarity=0.263 Sum_probs=47.4
Q ss_pred CeEEEEEcCCCCC---CHHHHHHHHHHHhhcCCceEEEEecCcc--cccchhhhccce--eEEecCCCHHHHHHHHHHHH
Q 019145 155 PYKIIILDEADSM---TEDAQNALRRTMETYSKVTRFFFICNYI--SRIIEPLASRCA--KFRFKPLSEEVMSSRVLHIC 227 (345)
Q Consensus 155 ~~~iliiDE~~~l---~~~~~~~l~~~le~~~~~~~ii~~~n~~--~~l~~~l~~r~~--~i~~~~~~~~~~~~~l~~~~ 227 (345)
+.+++++||+..+ .....+.+..+++. ...+|++++.. ....+.+..+.. ++++.+-+.+++...+..+.
T Consensus 96 ~~~~lllDE~~~~e~~~~~~~~~l~~~~~~---~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 96 EADVIIIDEIGKMELKSPKFVKAVEEVLDS---EKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNRL 172 (174)
T ss_pred CCCEEEEECCCcchhhhHHHHHHHHHHHhC---CCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHHH
Confidence 4579999997654 34456667777743 23566666653 235666766654 88999999999988887654
No 314
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.02 E-value=0.00013 Score=67.28 Aligned_cols=146 Identities=19% Similarity=0.175 Sum_probs=70.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc-CCCCCCCceeeeecCCccchHHHHHHHHHHHHh---hhcCCCCCC-----CCCCC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF-GPELYKSRVLELNASDDRGINVVRTKIKTFAAV---AVGSGQRRG-----GYPCP 154 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~ 154 (345)
.++|.||+|+||||++..++..+. ... +..+..+++...+... .+.+..+... +........ .....
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~--g~~V~li~~D~~r~~a--~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~ 298 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYG--KKKVALITLDTYRIGA--VEQLKTYAKIMGIPVEVVYDPKELAKALEQLR 298 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcC--CCeEEEEECCccHHHH--HHHHHHHHHHhCCceEccCCHHhHHHHHHHhC
Confidence 479999999999999999988763 222 2234434433221110 1112111110 000000000 00123
Q ss_pred CeEEEEEcCCCCCC--HHHHHHHHHHHhh--cCCceEEEEecCcccccchhhhccce-----eEEecCCCHHHHHHHHHH
Q 019145 155 PYKIIILDEADSMT--EDAQNALRRTMET--YSKVTRFFFICNYISRIIEPLASRCA-----KFRFKPLSEEVMSSRVLH 225 (345)
Q Consensus 155 ~~~iliiDE~~~l~--~~~~~~l~~~le~--~~~~~~ii~~~n~~~~l~~~l~~r~~-----~i~~~~~~~~~~~~~l~~ 225 (345)
.+++|+||.....+ ....+.|..+++. .+..+.+++.++....-...+..++. .+-|..++...-..-+..
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~TKlDet~~~G~i~~ 378 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFTKLDETSSLGSILS 378 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEEecccccccccHHHH
Confidence 56899999987764 3455667777762 22344566665544333333333322 344555554333333333
Q ss_pred HHHHhCCC
Q 019145 226 ICNEEGLN 233 (345)
Q Consensus 226 ~~~~~~~~ 233 (345)
.+...+++
T Consensus 379 ~~~~~~lP 386 (424)
T PRK05703 379 LLIESGLP 386 (424)
T ss_pred HHHHHCCC
Confidence 33444443
No 315
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.99 E-value=4.3e-05 Score=75.59 Aligned_cols=117 Identities=14% Similarity=0.172 Sum_probs=67.1
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHH-------HHHHH
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK-------IKTFA 138 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 138 (345)
.+.....+...+... ...+|+|+||||||++++++...+... +..+..+.+ .......+.+. +..+.
T Consensus 354 s~~Q~~Av~~i~~s~--~~~il~G~aGTGKTtll~~i~~~~~~~---g~~V~~~Ap-Tg~Aa~~L~~~~g~~a~Ti~~~~ 427 (744)
T TIGR02768 354 SEEQYEAVRHVTGSG--DIAVVVGRAGTGKSTMLKAAREAWEAA---GYRVIGAAL-SGKAAEGLQAESGIESRTLASLE 427 (744)
T ss_pred CHHHHHHHHHHhcCC--CEEEEEecCCCCHHHHHHHHHHHHHhC---CCeEEEEeC-cHHHHHHHHhccCCceeeHHHHH
Confidence 344555555544332 347999999999999999998776322 233443322 21111111110 11110
Q ss_pred HhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcc
Q 019145 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (345)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~ 195 (345)
.. . ........+.++|||||+.+++......|+..... ....+|++++..
T Consensus 428 ~~-~----~~~~~~~~~~~llIvDEasMv~~~~~~~Ll~~~~~--~~~kliLVGD~~ 477 (744)
T TIGR02768 428 YA-W----ANGRDLLSDKDVLVIDEAGMVGSRQMARVLKEAEE--AGAKVVLVGDPE 477 (744)
T ss_pred hh-h----ccCcccCCCCcEEEEECcccCCHHHHHHHHHHHHh--cCCEEEEECChH
Confidence 00 0 01111234678999999999998888887776543 356788888543
No 316
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.99 E-value=0.00073 Score=59.86 Aligned_cols=48 Identities=21% Similarity=0.085 Sum_probs=39.3
Q ss_pred eEEecCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHhcCCCHHHHHH
Q 019145 208 KFRFKPLSEEVMSSRVLHICNEEGL---NLDAEALSTLSSISQGDLRRAIT 255 (345)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~~~~~~~~---~i~~~~~~~l~~~s~g~~r~~~~ 255 (345)
.+.+++++.+|+..++..+....-+ ..++...+.+.-.++||+|.+.+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el~k 308 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRELEK 308 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHhcc
Confidence 7899999999999999998875443 35677788888889999998753
No 317
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.99 E-value=6e-05 Score=59.98 Aligned_cols=23 Identities=48% Similarity=0.845 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
++|+||||+|||+++..++..+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999873
No 318
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=97.98 E-value=4e-05 Score=59.85 Aligned_cols=65 Identities=22% Similarity=0.304 Sum_probs=58.1
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhh
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQH 332 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~ 332 (345)
||.++|.+++|....+.++++++++.++|..+++..++++.+.|.||..++..|..++|.++.-+
T Consensus 1 It~e~V~~~lG~v~~~~i~~l~~ai~~~d~~~~l~~~~~l~~~G~d~~~~l~~L~~~~R~ll~~k 65 (143)
T PF12169_consen 1 ITAEDVREILGLVDEEQIFELLDAILEGDAAEALELLNELLEQGKDPKQFLDDLIEYLRDLLLYK 65 (143)
T ss_dssp B-HHHHHHHHTHTSTHHHHHHHHHHHTT-HHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999987533
No 319
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.97 E-value=6.7e-05 Score=61.76 Aligned_cols=147 Identities=17% Similarity=0.240 Sum_probs=71.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCC-----------CCC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG-----------GYP 152 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~ 152 (345)
.++|.||+|+||||++-.+|..+... .....++..+.......+.++..-+.+ ..+........ ...
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l-~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEIL-GVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHHH-TEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHHh-ccccchhhcchhhHHHHHHHHHHHh
Confidence 36999999999999999999988544 333444444433322222222211111 11100000000 000
Q ss_pred CCCeEEEEEcCCCCCCH--HHHHHHHHHHhhc-CCceEEEEecCcccccchhhhcc---c--eeEEecCCCHHHHHHHHH
Q 019145 153 CPPYKIIILDEADSMTE--DAQNALRRTMETY-SKVTRFFFICNYISRIIEPLASR---C--AKFRFKPLSEEVMSSRVL 224 (345)
Q Consensus 153 ~~~~~iliiDE~~~l~~--~~~~~l~~~le~~-~~~~~ii~~~n~~~~l~~~l~~r---~--~~i~~~~~~~~~~~~~l~ 224 (345)
..++++|+||=....+. +..+.+.++++.. +..+.+++.++....-...+..+ + .-+-|.++++..-..-+-
T Consensus 81 ~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTKlDet~~~G~~l 160 (196)
T PF00448_consen 81 KKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTKLDETARLGALL 160 (196)
T ss_dssp HTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEESTTSSSTTHHHH
T ss_pred hcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccCceEEEEeecCCCCcccce
Confidence 12457999999887763 3455666666553 34555666554433322222222 1 245566666544433333
Q ss_pred HHHHHhCC
Q 019145 225 HICNEEGL 232 (345)
Q Consensus 225 ~~~~~~~~ 232 (345)
..+...+.
T Consensus 161 ~~~~~~~~ 168 (196)
T PF00448_consen 161 SLAYESGL 168 (196)
T ss_dssp HHHHHHTS
T ss_pred eHHHHhCC
Confidence 33344333
No 320
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.95 E-value=4e-05 Score=69.37 Aligned_cols=95 Identities=26% Similarity=0.261 Sum_probs=51.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc-CCCCCCCceeeeecCCccchHHHHHHHHHHH----------Hh-hhcCCCCCCCC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF-GPELYKSRVLELNASDDRGINVVRTKIKTFA----------AV-AVGSGQRRGGY 151 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~~~~~~~~~ 151 (345)
.+++.|.||||||.++-.+++.+. ........++..+.. ....++..+.... .. ..-........
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~---l~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 79 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHP---LRNKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDK 79 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecch---HHHHHHHHHhhhcccchhhhhhhhhHHHHhhcccccc
Confidence 369999999999999999999981 111112222222222 1222222222211 00 00000000112
Q ss_pred CCCCeEEEEEcCCCCCCHH--------HHHHHHHHHhh
Q 019145 152 PCPPYKIIILDEADSMTED--------AQNALRRTMET 181 (345)
Q Consensus 152 ~~~~~~iliiDE~~~l~~~--------~~~~l~~~le~ 181 (345)
....+++|||||+|.+... ..+.|..++..
T Consensus 80 ~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 80 EKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred cCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 3457889999999999762 24567777766
No 321
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.95 E-value=0.00011 Score=73.73 Aligned_cols=191 Identities=12% Similarity=0.027 Sum_probs=106.3
Q ss_pred cccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc-CCCCCCCceeeeecCCccchHHHHHHHHHHHHhhh
Q 019145 64 AHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF-GPELYKSRVLELNASDDRGINVVRTKIKTFAAVAV 142 (345)
Q Consensus 64 ~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (345)
+|++..++.+.+.+.......+=++|..|+||||+++.+.+... .....+..++..-..+..........+..+.....
T Consensus 161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~ 240 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDE 240 (889)
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCc
Confidence 99999999999999887776789999999999999999998874 22222222222222221122222222222111111
Q ss_pred cCCCC--------CCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccceeEEecCC
Q 019145 143 GSGQR--------RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPL 214 (345)
Q Consensus 143 ~~~~~--------~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~ 214 (345)
..... .......++-+|++||+-.= ...+.+...+-.......+++||....--..++ .....++..-+
T Consensus 241 ~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m-~~~~~~~v~~L 317 (889)
T KOG4658|consen 241 EWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAM-GVDYPIEVECL 317 (889)
T ss_pred ccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccc-cCCcccccccc
Confidence 00000 00112345679999997532 122222222212223467888886533211112 22445677778
Q ss_pred CHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHhcCCCHHHHHHHHH
Q 019145 215 SEEVMSSRVLHICNEEGLN---LDAEALSTLSSISQGDLRRAITYLQ 258 (345)
Q Consensus 215 ~~~~~~~~l~~~~~~~~~~---i~~~~~~~l~~~s~g~~r~~~~~l~ 258 (345)
+.++....+++.+-..... --++....+++.|+|-|-. ++.+-
T Consensus 318 ~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLA-l~viG 363 (889)
T KOG4658|consen 318 TPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLA-LNVLG 363 (889)
T ss_pred CccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHH-HHHHH
Confidence 8888888887766322111 1367788888999996655 44443
No 322
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=97.94 E-value=6e-05 Score=61.32 Aligned_cols=43 Identities=35% Similarity=0.505 Sum_probs=35.3
Q ss_pred ccHHHHHHHHHHHHcC-CCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 65 HQEEVVRVLTNTLETA-NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 65 g~~~~~~~l~~~l~~~-~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.|.+++..+.+.+... ..++++|.+|+|+|||.++-.++.++.
T Consensus 7 ~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~ 50 (184)
T PF04851_consen 7 YQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA 50 (184)
T ss_dssp HHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc
Confidence 4677778888887776 566799999999999999998777763
No 323
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.91 E-value=1.8e-05 Score=65.06 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCc
Q 019145 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (345)
Q Consensus 156 ~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~ 194 (345)
..+|||||++++++.....++.-+ ..++.+|++++.
T Consensus 120 ~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~GD~ 155 (205)
T PF02562_consen 120 NAFIIVDEAQNLTPEELKMILTRI---GEGSKIIITGDP 155 (205)
T ss_dssp SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEEE--
T ss_pred ceEEEEecccCCCHHHHHHHHccc---CCCcEEEEecCc
Confidence 479999999999988766665444 567788888754
No 324
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.90 E-value=0.00016 Score=58.36 Aligned_cols=25 Identities=40% Similarity=0.573 Sum_probs=22.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~ 108 (345)
-++|+|+||+||||+++.+++.+..
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHH
Confidence 4799999999999999999999843
No 325
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.88 E-value=8.7e-05 Score=66.77 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=21.7
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|+||+|+||||++..++..+
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 357999999999999999999876
No 326
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.88 E-value=0.00012 Score=73.67 Aligned_cols=117 Identities=12% Similarity=0.088 Sum_probs=66.2
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHH-------HHHHHHH
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR-------TKIKTFA 138 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 138 (345)
.+.....+..++.... ..+++|++||||||+++.+...+... +..++.+..+. .....+. ..+..+.
T Consensus 348 s~eQr~Av~~il~s~~--v~vv~G~AGTGKTT~l~~~~~~~e~~---G~~V~~~ApTG-kAA~~L~e~tGi~a~TI~sll 421 (988)
T PRK13889 348 SGEQADALAHVTDGRD--LGVVVGYAGTGKSAMLGVAREAWEAA---GYEVRGAALSG-IAAENLEGGSGIASRTIASLE 421 (988)
T ss_pred CHHHHHHHHHHhcCCC--eEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEecCcH-HHHHHHhhccCcchhhHHHHH
Confidence 3444445554443322 46899999999999998877655221 23344332211 1111111 1112211
Q ss_pred HhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcc
Q 019145 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (345)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~ 195 (345)
... ........+.++|||||+.+++......|++.... ....+|++++..
T Consensus 422 ~~~-----~~~~~~l~~~~vlIVDEASMv~~~~m~~LL~~a~~--~garvVLVGD~~ 471 (988)
T PRK13889 422 HGW-----GQGRDLLTSRDVLVIDEAGMVGTRQLERVLSHAAD--AGAKVVLVGDPQ 471 (988)
T ss_pred hhh-----cccccccccCcEEEEECcccCCHHHHHHHHHhhhh--CCCEEEEECCHH
Confidence 100 00111234567999999999999988888877654 457788888543
No 327
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.87 E-value=0.00026 Score=56.43 Aligned_cols=51 Identities=10% Similarity=0.102 Sum_probs=35.1
Q ss_pred CCeEEEEEcCCCCCCH---HHHHHHHHHHhhcCCceEEEEecCcccccchhhhccce
Q 019145 154 PPYKIIILDEADSMTE---DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207 (345)
Q Consensus 154 ~~~~iliiDE~~~l~~---~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~ 207 (345)
.++++||+||+...-. =..+.++.+++..|+.+-+|+|+... ++.+....+
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~---p~~l~e~AD 149 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC---PQDLLELAD 149 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC---CHHHHHhCc
Confidence 4678999999863211 01235778888889999999999754 445555555
No 328
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.87 E-value=8.2e-05 Score=57.28 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=21.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~ 108 (345)
+++++||+|+|||+++..++..+..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLD 26 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHh
Confidence 5899999999999999988888743
No 329
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.87 E-value=0.00027 Score=61.85 Aligned_cols=120 Identities=13% Similarity=0.133 Sum_probs=62.4
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHH-HHHHHHHhhhcCCCC---CCCCCCCCeEE
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT-KIKTFAAVAVGSGQR---RGGYPCPPYKI 158 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~i 158 (345)
..++|||+-|.|||+|.-.+.+.+-.+..... ....... .-+...... +...+ ......++.+|
T Consensus 66 ~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~-----------HFh~FM~~vH~~l~~l~-g~~dpl~~iA~~~~~~~~v 133 (367)
T COG1485 66 RGLYLWGGVGRGKTMLMDLFYESLPGERKRRL-----------HFHRFMARVHQRLHTLQ-GQTDPLPPIADELAAETRV 133 (367)
T ss_pred ceEEEECCCCccHHHHHHHHHhhCCccccccc-----------cHHHHHHHHHHHHHHHc-CCCCccHHHHHHHHhcCCE
Confidence 45999999999999999999988732211111 1111111 111111111 00000 00001245679
Q ss_pred EEEcCCCCCCHHHHHHHHHHHhhc-CCceEEEEecCcccc-----------c---chhhhccceeEEecCC
Q 019145 159 IILDEADSMTEDAQNALRRTMETY-SKVTRFFFICNYISR-----------I---IEPLASRCAKFRFKPL 214 (345)
Q Consensus 159 liiDE~~~l~~~~~~~l~~~le~~-~~~~~ii~~~n~~~~-----------l---~~~l~~r~~~i~~~~~ 214 (345)
|++||++--.....-.|-++++.. ...+.++.|+|.... + .+.|.++|.++.+..+
T Consensus 134 LCfDEF~VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~LY~dGlqR~~FLP~I~li~~~~~v~~vD~~ 204 (367)
T COG1485 134 LCFDEFEVTDIADAMILGRLLEALFARGVVLVATSNTAPDNLYKDGLQRERFLPAIDLIKSHFEVVNVDGP 204 (367)
T ss_pred EEeeeeeecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHhcccchhHHhhHHHHHHHHHheEEEEecCC
Confidence 999998765544444444444432 246667777775421 2 2345567776655444
No 330
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.87 E-value=7.1e-05 Score=58.33 Aligned_cols=22 Identities=45% Similarity=0.912 Sum_probs=20.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++++||||+||||+++.+++.+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 6899999999999999999887
No 331
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.86 E-value=0.00082 Score=62.81 Aligned_cols=24 Identities=38% Similarity=0.624 Sum_probs=21.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+.|+||+|+||||++..|+..+
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 357999999999999999998875
No 332
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.85 E-value=1.6e-05 Score=60.11 Aligned_cols=22 Identities=45% Similarity=0.881 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|+|+||+||||+++.+++.+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999998
No 333
>PRK14532 adenylate kinase; Provisional
Probab=97.85 E-value=0.0006 Score=55.91 Aligned_cols=23 Identities=30% Similarity=0.732 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
++++.||||+||||+++.+++.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999987
No 334
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.84 E-value=0.00016 Score=66.98 Aligned_cols=143 Identities=15% Similarity=0.148 Sum_probs=88.1
Q ss_pred cccccHHHHHHHHHHHHcCCC------------CcEEEeCCCCCCHHHHHHHHHHHhc---CCCCCCCceeeeecCCccc
Q 019145 62 DVAHQEEVVRVLTNTLETANC------------PHMLFYGPPGTGKTTTALAIAHQLF---GPELYKSRVLELNASDDRG 126 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~~~~------------~~lll~G~~G~GKT~la~~la~~l~---~~~~~~~~~~~~~~~~~~~ 126 (345)
.+.|++.+++++.-.+-.|.. =|+|+.|.|.+.||.|.+.+.+..- ...+.+..=+.+.+.-...
T Consensus 302 SI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVTtD 381 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVTTD 381 (818)
T ss_pred ccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEeec
Confidence 567999999988877755321 1489999999999999999988651 0011111111111111011
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-------------CceEEEEecC
Q 019145 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFFICN 193 (345)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-------------~~~~ii~~~n 193 (345)
.+.-...++. +.--.++++|++|||+|+++.-...++.++||... ..+.++.++|
T Consensus 382 ~eTGERRLEA------------GAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAAN 449 (818)
T KOG0479|consen 382 QETGERRLEA------------GAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAAN 449 (818)
T ss_pred cccchhhhhc------------CceEEccCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecC
Confidence 1111111111 11223577899999999999888889999998532 4567777776
Q ss_pred ccc-------------ccchhhhcccee--EEecCCCH
Q 019145 194 YIS-------------RIIEPLASRCAK--FRFKPLSE 216 (345)
Q Consensus 194 ~~~-------------~l~~~l~~r~~~--i~~~~~~~ 216 (345)
+.. .+++.|++||+. +-....+.
T Consensus 450 PvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~ 487 (818)
T KOG0479|consen 450 PVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDA 487 (818)
T ss_pred ccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccc
Confidence 532 278999999993 33444443
No 335
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.82 E-value=0.00014 Score=58.78 Aligned_cols=51 Identities=10% Similarity=0.131 Sum_probs=35.4
Q ss_pred CCeEEEEEcCCCCCCH---HHHHHHHHHHhhcCCceEEEEecCcccccchhhhccce
Q 019145 154 PPYKIIILDEADSMTE---DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCA 207 (345)
Q Consensus 154 ~~~~iliiDE~~~l~~---~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~ 207 (345)
+.+++||+||+-..-. =..+.++.+++..|..+-+|+|++.. ++.|....+
T Consensus 114 ~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~---p~~Lie~AD 167 (191)
T PRK05986 114 ESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA---PRELIEAAD 167 (191)
T ss_pred CCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC---CHHHHHhCc
Confidence 4678999999865422 12345778888889999999999653 344555444
No 336
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.80 E-value=0.00043 Score=56.98 Aligned_cols=99 Identities=18% Similarity=0.275 Sum_probs=63.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~ 164 (345)
++|.|+-|+|||++.+.|.....+.. +... ...+... .+.. .-++.+||+
T Consensus 55 lvl~G~QG~GKStf~~~L~~~~~~d~--------~~~~--~~kd~~~-~l~~-------------------~~iveldEl 104 (198)
T PF05272_consen 55 LVLVGKQGIGKSTFFRKLGPEYFSDS--------INDF--DDKDFLE-QLQG-------------------KWIVELDEL 104 (198)
T ss_pred eeEecCCcccHHHHHHHHhHHhccCc--------cccC--CCcHHHH-HHHH-------------------hHheeHHHH
Confidence 69999999999999999976642211 1111 1112221 1111 128999999
Q ss_pred CCCCHHHHHHHHHHHhh---------------cCCceEEEEecCcccccchh-hhccceeEEecC
Q 019145 165 DSMTEDAQNALRRTMET---------------YSKVTRFFFICNYISRIIEP-LASRCAKFRFKP 213 (345)
Q Consensus 165 ~~l~~~~~~~l~~~le~---------------~~~~~~ii~~~n~~~~l~~~-l~~r~~~i~~~~ 213 (345)
+.+.+...+.|..++.. .+..+++|.++|..+-+.+. =-+|+..+.+..
T Consensus 105 ~~~~k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf~~v~v~~ 169 (198)
T PF05272_consen 105 DGLSKKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRFWPVEVSK 169 (198)
T ss_pred hhcchhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEEEEEEEcC
Confidence 99998888888888752 23456677888876644433 345777777665
No 337
>PRK08118 topology modulation protein; Reviewed
Probab=97.80 E-value=0.0004 Score=55.71 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=21.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++||||+||||+++.+++.+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999998
No 338
>PRK14974 cell division protein FtsY; Provisional
Probab=97.80 E-value=0.00017 Score=64.20 Aligned_cols=24 Identities=46% Similarity=0.530 Sum_probs=21.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.++|+|++|+||||++..++..+.
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~ 165 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLK 165 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 379999999999999999998773
No 339
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.79 E-value=0.00075 Score=55.01 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++++||||+||||+++.+++.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999999987
No 340
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.76 E-value=0.00044 Score=62.19 Aligned_cols=25 Identities=40% Similarity=0.616 Sum_probs=22.4
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
..+.|.||+|+||||++..|+..+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH 266 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH
Confidence 3479999999999999999998874
No 341
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.75 E-value=0.0004 Score=57.11 Aligned_cols=35 Identities=37% Similarity=0.424 Sum_probs=28.9
Q ss_pred HHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 73 LTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 73 l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
+...+-+....|.|+.|||||||||+.+-+++-+.
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s 162 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLS 162 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhh
Confidence 45555566667799999999999999999999873
No 342
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.73 E-value=0.00018 Score=73.02 Aligned_cols=102 Identities=14% Similarity=0.148 Sum_probs=62.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHH-------HHHHHHHhhhcCCCCCCCCCCCC
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT-------KIKTFAAVAVGSGQRRGGYPCPP 155 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 155 (345)
...++.|++||||||+++.+...+... +..++.+..+. .....+.+ .+..+... . ..+......
T Consensus 398 r~~~v~G~AGTGKTt~l~~~~~~~e~~---G~~V~g~ApTg-kAA~~L~e~~Gi~a~TIas~ll~-~----~~~~~~l~~ 468 (1102)
T PRK13826 398 RIAAVVGRAGAGKTTMMKAAREAWEAA---GYRVVGGALAG-KAAEGLEKEAGIQSRTLSSWELR-W----NQGRDQLDN 468 (1102)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEcCcH-HHHHHHHHhhCCCeeeHHHHHhh-h----ccCccCCCC
Confidence 347999999999999999998765321 34444443221 11112211 11111100 0 011122345
Q ss_pred eEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcc
Q 019145 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (345)
Q Consensus 156 ~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~ 195 (345)
..+|||||+.+++......|++.... ....+|++++..
T Consensus 469 ~~vlVIDEAsMv~~~~m~~Ll~~~~~--~garvVLVGD~~ 506 (1102)
T PRK13826 469 KTVFVLDEAGMVASRQMALFVEAVTR--AGAKLVLVGDPE 506 (1102)
T ss_pred CcEEEEECcccCCHHHHHHHHHHHHh--cCCEEEEECCHH
Confidence 67999999999999999988888864 456788888643
No 343
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.71 E-value=4.2e-05 Score=63.69 Aligned_cols=22 Identities=45% Similarity=0.697 Sum_probs=19.4
Q ss_pred CcEEEeCCCCCCHHHHHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~ 104 (345)
..++|||+||+|||++|+.++.
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcCC
Confidence 3489999999999999999874
No 344
>PRK14528 adenylate kinase; Provisional
Probab=97.70 E-value=0.0015 Score=53.42 Aligned_cols=24 Identities=42% Similarity=0.855 Sum_probs=21.9
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++.||||+||||+++.+++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999887
No 345
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.69 E-value=0.00037 Score=56.81 Aligned_cols=142 Identities=24% Similarity=0.264 Sum_probs=66.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA 164 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~ 164 (345)
++|+||+|||||.++-++|+.. +.+++..+.-.... ....+++.+......+-++ +++||-
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~------g~pvI~~Driq~y~------------~l~v~Sgrp~~~el~~~~R-iyL~~r 64 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKT------GAPVISLDRIQCYP------------ELSVGSGRPTPSELKGTRR-IYLDDR 64 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--------EEEEE-SGGG-G------------GGTTTTT---SGGGTT-EE-EES---
T ss_pred EEEECCCCCChhHHHHHHHHHh------CCCEEEecceeccc------------ccccccCCCCHHHHcccce-eeeccc
Confidence 5899999999999999999998 66676655322111 1111111111111122334 777764
Q ss_pred CC----CC-HHHHHHHHHHHhhcCCceEEEEecCcccccchhhhcc-------ceeEEecCCCHHHHHHHHHHHHHHhCC
Q 019145 165 DS----MT-EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASR-------CAKFRFKPLSEEVMSSRVLHICNEEGL 232 (345)
Q Consensus 165 ~~----l~-~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r-------~~~i~~~~~~~~~~~~~l~~~~~~~~~ 232 (345)
.. ++ .+..+.|...+.+.....-+|+-+.+...+..-..+. ..+..+.-++.+......+++.++.-.
T Consensus 65 ~l~~G~i~a~ea~~~Li~~v~~~~~~~~~IlEGGSISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~ 144 (233)
T PF01745_consen 65 PLSDGIINAEEAHERLISEVNSYSAHGGLILEGGSISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQMLR 144 (233)
T ss_dssp -GGG-S--HHHHHHHHHHHHHTTTTSSEEEEEE--HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHHHS
T ss_pred cccCCCcCHHHHHHHHHHHHHhccccCceEEeCchHHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHhcC
Confidence 32 23 3455677777877776667777765544332222221 224555556666666666666654322
Q ss_pred C--CCHHHHHHHHHh
Q 019145 233 N--LDAEALSTLSSI 245 (345)
Q Consensus 233 ~--i~~~~~~~l~~~ 245 (345)
+ -.+..++.++..
T Consensus 145 p~~~~~Sll~EL~~l 159 (233)
T PF01745_consen 145 PDSSGPSLLEELVAL 159 (233)
T ss_dssp --SSS--HHHHHHHH
T ss_pred CCCCCCcHHHHHHHH
Confidence 1 224455555544
No 346
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.67 E-value=0.0046 Score=62.31 Aligned_cols=106 Identities=15% Similarity=0.122 Sum_probs=72.2
Q ss_pred eEEEEEcCCCCCCHHHHHHHHHHHhhcC--C--ceEEEEecCcccccchhhhc--cceeEEecCCCHHHHHHHHHHHHHH
Q 019145 156 YKIIILDEADSMTEDAQNALRRTMETYS--K--VTRFFFICNYISRIIEPLAS--RCAKFRFKPLSEEVMSSRVLHICNE 229 (345)
Q Consensus 156 ~~iliiDE~~~l~~~~~~~l~~~le~~~--~--~~~ii~~~n~~~~l~~~l~~--r~~~i~~~~~~~~~~~~~l~~~~~~ 229 (345)
+-|+|+||+|..+....+.|-.++.... . ...+..+.+....+....++ +...+.+.|++..+....+...+..
T Consensus 155 plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~ 234 (849)
T COG3899 155 PLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGC 234 (849)
T ss_pred CeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCC
Confidence 5699999999999998888888887654 0 00111111222222222222 2348999999999999999888743
Q ss_pred hCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019145 230 EGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (345)
Q Consensus 230 ~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~ 262 (345)
+.....+..+.+.+.+.||+=-+...+..+..
T Consensus 235 -~~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~ 266 (849)
T COG3899 235 -TKLLPAPLLELIFEKTKGNPFFIEEFLKALYE 266 (849)
T ss_pred -cccccchHHHHHHHHhcCCCccHHHHHHHHHh
Confidence 34577888999999999988776666655543
No 347
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=97.65 E-value=0.00017 Score=64.02 Aligned_cols=132 Identities=23% Similarity=0.293 Sum_probs=72.6
Q ss_pred HHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCC
Q 019145 70 VRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR 148 (345)
Q Consensus 70 ~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (345)
+..++.+++.-...+ ++|+|||+||||.++..+.+-+ ...++.+..+.. .+-..+
T Consensus 249 l~~lk~~Lkg~PKKnClvi~GPPdTGKS~F~~SLi~Fl------~GkViSf~Ns~S-----------hFWLqP------- 304 (432)
T PF00519_consen 249 LIALKQFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFL------KGKVISFVNSKS-----------HFWLQP------- 304 (432)
T ss_dssp HHHHHHHHHTBTTSSEEEEESSCCCSHHHHHHHHHHHH------TSEEE-GGGTTS-----------CGGGGG-------
T ss_pred HHHHHHHHhCCCcccEEEEECCCCCchhHHHHHHHHHh------CCEEEEecCCCC-----------cccccc-------
Confidence 467777887655555 7999999999999999999988 334443322211 011111
Q ss_pred CCCCCCCeEEEEEcCCCCCCHHHH-HHHHHHHhhcC-------------CceEEEEecCcc---cccchhhhccceeEEe
Q 019145 149 GGYPCPPYKIIILDEADSMTEDAQ-NALRRTMETYS-------------KVTRFFFICNYI---SRIIEPLASRCAKFRF 211 (345)
Q Consensus 149 ~~~~~~~~~iliiDE~~~l~~~~~-~~l~~~le~~~-------------~~~~ii~~~n~~---~~l~~~l~~r~~~i~~ 211 (345)
..+.++-++||+-.--=+-. ..|++.++..+ ...++++|+|.. +.-..-|.+|...++|
T Consensus 305 ----L~d~Ki~llDDAT~~cW~Y~D~ylRNaLDGN~vsiD~KHkap~Qik~PPLlITsN~dv~~~~~~~YLhSRi~~f~F 380 (432)
T PF00519_consen 305 ----LADAKIALLDDATYPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKKDDRWKYLHSRITCFEF 380 (432)
T ss_dssp ----GCT-SSEEEEEE-HHHHHHHHHHTHHHHCTSEEEEEESSSEEEEEE---EEEEESS-TTTSCCCHHHCTTEEEEE-
T ss_pred ----hhcCcEEEEcCCcccHHHHHHHHHHhccCCCeeeeeccCCCceEeecCceEEecCCCCCcchhhhhhhheEEEEEc
Confidence 12446889998743211111 23455665322 123467777643 2335678889888888
Q ss_pred cCC-------------CHHHHHHHHHHHHHH
Q 019145 212 KPL-------------SEEVMSSRVLHICNE 229 (345)
Q Consensus 212 ~~~-------------~~~~~~~~l~~~~~~ 229 (345)
+.+ +....+.++++...+
T Consensus 381 ~n~~P~d~~G~P~y~ltd~~WksFF~rlw~~ 411 (432)
T PF00519_consen 381 PNPFPLDENGNPVYELTDANWKSFFRRLWSQ 411 (432)
T ss_dssp -S-S-BSTTSSBSS---HHHHHHHHHHHTCC
T ss_pred CCccccCCCCCeeEEeccChHHHHHHHHHHh
Confidence 653 235555666555543
No 348
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.64 E-value=0.00045 Score=59.68 Aligned_cols=29 Identities=31% Similarity=0.407 Sum_probs=25.3
Q ss_pred HcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 78 ETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 78 ~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+...+++|.||+|+||||+.+.++..+
T Consensus 107 ~~~~~~~~~i~g~~g~GKttl~~~l~~~~ 135 (270)
T TIGR02858 107 RNNRVLNTLIISPPQCGKTTLLRDLARIL 135 (270)
T ss_pred hCCCeeEEEEEcCCCCCHHHHHHHHhCcc
Confidence 44555689999999999999999999887
No 349
>PF13245 AAA_19: Part of AAA domain
Probab=97.64 E-value=0.00018 Score=49.27 Aligned_cols=24 Identities=50% Similarity=0.719 Sum_probs=17.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.+++.||||+|||+++..++..+.
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 367799999999966655555553
No 350
>PRK07261 topology modulation protein; Provisional
Probab=97.62 E-value=0.0012 Score=53.27 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++|+||+||||+++.++..+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999886
No 351
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.62 E-value=0.00069 Score=59.00 Aligned_cols=52 Identities=25% Similarity=0.434 Sum_probs=35.6
Q ss_pred CCCCCccccccHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 56 RPKQVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~~--~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.+.+++++.-.......+.+.+... ...+++++||+|+||||+++++...+.
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~ 152 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIP 152 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred ccccHhhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcc
Confidence 3446667765444445555555443 234699999999999999999998873
No 352
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=97.59 E-value=0.00094 Score=57.22 Aligned_cols=191 Identities=21% Similarity=0.144 Sum_probs=100.1
Q ss_pred CCccccccHHH---HHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHH
Q 019145 59 QVKDVAHQEEV---VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (345)
Q Consensus 59 ~~~~~~g~~~~---~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (345)
...++++-+.. +..+...-+.+. ...++|.+|.|||+.++.+++.. .+.+-+.++.......+...+.
T Consensus 70 ~~~~~l~tkt~r~~~~~~~~A~k~g~--l~~vyg~~g~gKt~a~~~y~~s~-------p~~~l~~~~p~~~a~~~i~~i~ 140 (297)
T COG2842 70 LAPDFLETKTVRRIFFRTRPASKTGS--LVVVYGYAGLGKTQAAKNYAPSN-------PNALLIEADPSYTALVLILIIC 140 (297)
T ss_pred ccccccccchhHhHhhhhhhhhhcCc--eEEEeccccchhHHHHHhhcccC-------ccceeecCChhhHHHHHHHHHH
Confidence 33455554333 333333333333 46999999999999999998764 2223233322222111111110
Q ss_pred HHHHhhhcCCC-----CCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcc--------cccchhh
Q 019145 136 TFAAVAVGSGQ-----RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI--------SRIIEPL 202 (345)
Q Consensus 136 ~~~~~~~~~~~-----~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~--------~~l~~~l 202 (345)
........... ..........+.+++||++.++...++.|....+... +-+++++++. ......+
T Consensus 141 ~~~~~~~~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~~G--i~~vLvG~prL~~~l~~~~~~~~rl 218 (297)
T COG2842 141 AAAFGATDGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDKTG--IGVVLVGMPRLFKVLRRPEDELSRL 218 (297)
T ss_pred HHHhcccchhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHhhC--ceEEEecChHHHhccccchHHHHHH
Confidence 00000000000 0000012345799999999999999999999988754 3355565443 1112222
Q ss_pred hccce---eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh
Q 019145 203 ASRCA---KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF 264 (345)
Q Consensus 203 ~~r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~ 264 (345)
.+|.. .+.-..++.++...+...... ...++.+..+....+|++|.+-..+.-+...+
T Consensus 219 ~srv~v~~~~~~~~~d~d~~~~~~~~~l~----~~~~~~v~~~~~~~~g~~~~L~~~l~~~~~~a 279 (297)
T COG2842 219 YSRVRVGKLLGEKFPDADELAEIAALVLP----TEDELVLMQVIKETEGNIRRLDKILAGAVGTA 279 (297)
T ss_pred HHHhhhHhhhhhhhhhhHHHHHHHHhhCc----cchHHHHHHHHHhcchhHhHHHHHHhhhhhhh
Confidence 33322 111122333444444322221 15677788888888999999888877666544
No 353
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.56 E-value=0.00046 Score=56.53 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=18.2
Q ss_pred CcEEEeCCCCCCHHHHH-HHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTA-LAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la-~~la~~l 106 (345)
.++++.||+|+|||+.+ ..+.+.+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 56999999999999944 4444444
No 354
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.00092 Score=60.82 Aligned_cols=145 Identities=14% Similarity=0.154 Sum_probs=68.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCC-------CCCCCCCCeE
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR-------RGGYPCPPYK 157 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 157 (345)
++|.||+|+||||++..++....... +..+.-+++...+.. . ...+..+.....-.... ........++
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~~--G~~V~Lit~Dt~R~a-A-~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D 301 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHM--GKSVSLYTTDNYRIA-A-IEQLKRYADTMGMPFYPVKDIKKFKETLARDGSE 301 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhc--CCeEEEecccchhhh-H-HHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCC
Confidence 68999999999999999997652111 122222222211111 0 11111111110000000 0000113567
Q ss_pred EEEEcCCCCCC--HHHHHHHHHHHhhc----CCceEEEEecCcccccchhhhccce-----eEEecCCCHHHHHHHHHHH
Q 019145 158 IIILDEADSMT--EDAQNALRRTMETY----SKVTRFFFICNYISRIIEPLASRCA-----KFRFKPLSEEVMSSRVLHI 226 (345)
Q Consensus 158 iliiDE~~~l~--~~~~~~l~~~le~~----~~~~~ii~~~n~~~~l~~~l~~r~~-----~i~~~~~~~~~~~~~l~~~ 226 (345)
+|+||=+...+ ....+.|..++... +..+.+++.++....-...+.+++. -+-|.+++...-..-+-..
T Consensus 302 ~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKLDEt~~~G~il~i 381 (432)
T PRK12724 302 LILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEADFLGSFLEL 381 (432)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEcccCCCCccHHHHH
Confidence 99999766653 45566666666432 2245555555443322223333222 4566666665544444444
Q ss_pred HHHhCCC
Q 019145 227 CNEEGLN 233 (345)
Q Consensus 227 ~~~~~~~ 233 (345)
+...+++
T Consensus 382 ~~~~~lP 388 (432)
T PRK12724 382 ADTYSKS 388 (432)
T ss_pred HHHHCCC
Confidence 4444444
No 355
>PRK06762 hypothetical protein; Provisional
Probab=97.54 E-value=0.0018 Score=51.93 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=21.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
-++|+|+||+||||+++.+++.+
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999999999987
No 356
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.53 E-value=0.0016 Score=56.06 Aligned_cols=22 Identities=36% Similarity=0.694 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|+|+||+||||+++.+++.+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 357
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.53 E-value=0.00012 Score=59.10 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=22.9
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l 106 (345)
+..++|+|+||+|||++++.+++.+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999999998
No 358
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.52 E-value=0.0012 Score=54.25 Aligned_cols=22 Identities=45% Similarity=0.847 Sum_probs=21.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++++||||+||||+++.|++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7999999999999999999986
No 359
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=97.52 E-value=0.00016 Score=61.43 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=19.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
+++.|+||+|||++++.+...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 478999999999999999988
No 360
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.51 E-value=0.00068 Score=62.61 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=21.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.++|+|++|+||||++..+|..+.
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~ 120 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFK 120 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 479999999999999999998874
No 361
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.50 E-value=0.00086 Score=70.48 Aligned_cols=125 Identities=21% Similarity=0.201 Sum_probs=68.8
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcC-CCCCCCceeeeecCCccchHHHH------HHHHHHH
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG-PELYKSRVLELNASDDRGINVVR------TKIKTFA 138 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 138 (345)
.+.....+..++.... ..++|.|.+||||||+++.+...+.. ....+..++-+.+ .......+. ..+..+.
T Consensus 837 t~~Qr~Av~~iLts~d-r~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAP-TgkAa~~L~e~Gi~A~TIasfL 914 (1623)
T PRK14712 837 TSGQRAATRMILETSD-RFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGP-THRAVGEMRSAGVDAQTLASFL 914 (1623)
T ss_pred CHHHHHHHHHHHhCCC-ceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEec-hHHHHHHHHHhCchHhhHHHHh
Confidence 4455555665565432 35799999999999999888765421 0011223333322 211111111 1111111
Q ss_pred HhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcc
Q 019145 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (345)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~ 195 (345)
..... ..........+..++||||+.+++...+..|+..++. ...++|++++..
T Consensus 915 ~~~~~-~~~~~~~~~~~~~llIVDEASMV~~~~m~~ll~~~~~--~garvVLVGD~~ 968 (1623)
T PRK14712 915 HDTQL-QQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAA--GGGRAVASGDTD 968 (1623)
T ss_pred ccccc-hhhcccCCCCCCcEEEEEccccccHHHHHHHHHhhhh--CCCEEEEEcchh
Confidence 11000 0000111123467999999999999998888888864 346789998644
No 362
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.50 E-value=0.0078 Score=53.83 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=27.9
Q ss_pred HHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 69 VVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 69 ~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
....|..+++.+ .+++++|++|+||||+++++...+
T Consensus 149 ~~~~L~~~v~~~--~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 149 IKEFLEHAVISK--KNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred HHHHHHHHHHcC--CcEEEECCCCCCHHHHHHHHHhhC
Confidence 334444455444 479999999999999999999887
No 363
>PRK00625 shikimate kinase; Provisional
Probab=97.49 E-value=0.00013 Score=58.82 Aligned_cols=31 Identities=26% Similarity=0.435 Sum_probs=26.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeee
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 120 (345)
+++|+|.||+||||+++.+++.+ +..++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l------~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL------SLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh------CCCEEEhh
Confidence 58999999999999999999998 56665544
No 364
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0025 Score=63.15 Aligned_cols=173 Identities=17% Similarity=0.186 Sum_probs=107.0
Q ss_pred cccccc-HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCceeeeecC----CccchHHHH
Q 019145 61 KDVAHQ-EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNAS----DDRGINVVR 131 (345)
Q Consensus 61 ~~~~g~-~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~----~~~~~~~~~~~~----~~~~~~~~~ 131 (345)
+-++|. ++-++.+.+.+......|-+|.|.||+|||.++..+++.....+ .....++.++-. .......+.
T Consensus 186 dPvigr~deeirRvi~iL~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E 265 (898)
T KOG1051|consen 186 DPVIGRHDEEIRRVIEILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFE 265 (898)
T ss_pred CCccCCchHHHHHHHHHHhccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHH
Confidence 445576 77778888888877778899999999999999999999875322 122334434332 112223344
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------HHHHHHHHHHhhcCCceEEEEecCc-----cccc
Q 019145 132 TKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------DAQNALRRTMETYSKVTRFFFICNY-----ISRI 198 (345)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------~~~~~l~~~le~~~~~~~ii~~~n~-----~~~l 198 (345)
..++........ .+..-|+++||++.+.. +..+.|...+.. .. ..+|-+++. .-.-
T Consensus 266 ~rlk~l~k~v~~---------~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~r-g~-l~~IGatT~e~Y~k~iek 334 (898)
T KOG1051|consen 266 ERLKELLKEVES---------GGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLAR-GG-LWCIGATTLETYRKCIEK 334 (898)
T ss_pred HHHHHHHHHHhc---------CCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhc-CC-eEEEecccHHHHHHHHhh
Confidence 444444432111 12345999999998842 233444444443 22 666665531 1224
Q ss_pred chhhhccceeEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHH
Q 019145 199 IEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSS 244 (345)
Q Consensus 199 ~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~ 244 (345)
+|++.+|++.+.++-|+.++...++...... +|..++++++...+.
T Consensus 335 dPalErrw~l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~ 384 (898)
T KOG1051|consen 335 DPALERRWQLVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQ 384 (898)
T ss_pred CcchhhCcceeEeccCcccchhhhhhhhhhhhccccCCcccccccccccc
Confidence 7889999998888889888877777665544 455565555444443
No 365
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.46 E-value=0.00038 Score=73.23 Aligned_cols=147 Identities=22% Similarity=0.334 Sum_probs=91.1
Q ss_pred HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCC
Q 019145 71 RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGG 150 (345)
Q Consensus 71 ~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (345)
..+..+...+. -.++|-||.|+|||.+++.++++. +.++++++...... +++.+..+.....+.-.-+.+
T Consensus 430 a~~~~a~~~~~-~pillqG~tssGKtsii~~la~~~------g~~~vrinnhehtd---~qeyig~y~~~~~g~l~freg 499 (1856)
T KOG1808|consen 430 ADLARAISSGK-FPILLQGPTSSGKTSIIKELARAT------GKNIVRINNHEHTD---LQEYIGTYVADDNGDLVFREG 499 (1856)
T ss_pred HHHHHHHhcCC-CCeEEecCcCcCchhHHHHHHHHh------ccCceehhccccch---HHHHHHhhhcCCCCCeeeehh
Confidence 34444444443 359999999999999999999998 67777776644322 233333222111110000000
Q ss_pred C---CCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----CceEE---------EEecCcc------cccchhhhccce
Q 019145 151 Y---PCPPYKIIILDEADSMTEDAQNALRRTMETYS-----KVTRF---------FFICNYI------SRIIEPLASRCA 207 (345)
Q Consensus 151 ~---~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----~~~~i---------i~~~n~~------~~l~~~l~~r~~ 207 (345)
. ...+...+|+||++..+.+..+.|.+++++.. ...++ ..+-|.+ ..+..++.+|+.
T Consensus 500 ~LV~Alr~G~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~lsRa~~~rf~ 579 (1856)
T KOG1808|consen 500 VLVQALRNGDWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGRKILSRALRNRFI 579 (1856)
T ss_pred HHHHHHHhCCEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchhhhhhhcccccch
Confidence 0 01134599999999999999999999998722 12221 2222332 235677788888
Q ss_pred eEEecCCCHHHHHHHHHHHH
Q 019145 208 KFRFKPLSEEVMSSRVLHIC 227 (345)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~~~ 227 (345)
.++|.....+++..++..+|
T Consensus 580 e~~f~~~~e~e~~~i~~~~~ 599 (1856)
T KOG1808|consen 580 ELHFDDIGEEELEEILEHRC 599 (1856)
T ss_pred hhhhhhcCchhhhhhhcccc
Confidence 88888888887777776544
No 366
>PRK13947 shikimate kinase; Provisional
Probab=97.45 E-value=0.00016 Score=58.25 Aligned_cols=30 Identities=30% Similarity=0.431 Sum_probs=25.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeee
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 119 (345)
+++|.|+||+|||++++.+++.+ +.+++..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l------g~~~id~ 32 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL------SFGFIDT 32 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh------CCCEEEC
Confidence 69999999999999999999998 5555543
No 367
>PRK03839 putative kinase; Provisional
Probab=97.45 E-value=0.00014 Score=59.14 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+|+||+||||+++.+++.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37999999999999999999998
No 368
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.44 E-value=0.006 Score=47.56 Aligned_cols=22 Identities=41% Similarity=0.702 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+.++|+||+||||+++.++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999998
No 369
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.43 E-value=0.00013 Score=57.22 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=20.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++|.|||||||+++.+. .+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~l 23 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-EL 23 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-Hh
Confidence 47899999999999999999 66
No 370
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=97.43 E-value=0.0011 Score=70.41 Aligned_cols=125 Identities=19% Similarity=0.180 Sum_probs=69.2
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC-CCCCCceeeeecCCccchHHHHH------HHHHHH
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP-ELYKSRVLELNASDDRGINVVRT------KIKTFA 138 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 138 (345)
.+.....+..++.... ..++|.|.+||||||+++.+...+..- ...+..++-+.+ .......+.+ .+..+.
T Consensus 969 t~~Q~~Av~~il~s~d-r~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAP-TgrAAk~L~e~Gi~A~TI~s~L 1046 (1747)
T PRK13709 969 TSGQRAATRMILESTD-RFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGP-THRAVGEMRSAGVDAQTLASFL 1046 (1747)
T ss_pred CHHHHHHHHHHHhCCC-cEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECC-cHHHHHHHHhcCcchhhHHHHh
Confidence 3445555555554432 357999999999999999998775210 111223333322 2111111111 111111
Q ss_pred HhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcc
Q 019145 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (345)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~ 195 (345)
..... .............++||||+.+++......|++.+.. ...++|++++..
T Consensus 1047 ~~~~~-~~~~~~~~~~~~~llIVDEaSMv~~~~m~~Ll~~~~~--~garvVLVGD~~ 1100 (1747)
T PRK13709 1047 HDTQL-QQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAA--GGGRAVSSGDTD 1100 (1747)
T ss_pred ccccc-ccccccCCCCCCcEEEEEccccccHHHHHHHHHhhhc--CCCEEEEecchH
Confidence 11000 0000111123457999999999999999999988864 346788998643
No 371
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.43 E-value=0.00091 Score=61.56 Aligned_cols=53 Identities=26% Similarity=0.307 Sum_probs=42.0
Q ss_pred CCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC
Q 019145 56 RPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109 (345)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~ 109 (345)
...+|+++...+.....+..++...+ .-+|++||+|+||||+..++.+.++.+
T Consensus 233 ~~l~l~~Lg~~~~~~~~~~~~~~~p~-GliLvTGPTGSGKTTTLY~~L~~ln~~ 285 (500)
T COG2804 233 VILDLEKLGMSPFQLARLLRLLNRPQ-GLILVTGPTGSGKTTTLYAALSELNTP 285 (500)
T ss_pred ccCCHHHhCCCHHHHHHHHHHHhCCC-eEEEEeCCCCCCHHHHHHHHHHHhcCC
Confidence 45566777667777788888887655 236999999999999999999998654
No 372
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.43 E-value=0.00015 Score=61.38 Aligned_cols=38 Identities=42% Similarity=0.592 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
+....++..++.... ..++.||||||||+++..++..+
T Consensus 4 ~~Q~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 4 ESQREAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHh
Confidence 344455554444332 36999999999998888887776
No 373
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.42 E-value=0.00011 Score=65.79 Aligned_cols=30 Identities=27% Similarity=0.330 Sum_probs=24.7
Q ss_pred CCCCcEEEeCCCCCCHHHHHHHHHHHhcCC
Q 019145 80 ANCPHMLFYGPPGTGKTTTALAIAHQLFGP 109 (345)
Q Consensus 80 ~~~~~lll~G~~G~GKT~la~~la~~l~~~ 109 (345)
+.....+|+||||+|||++++.+++.....
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHHhh
Confidence 344458999999999999999999987443
No 374
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.41 E-value=0.0016 Score=53.78 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.++++||+|+||||++++++..+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 379999999999999999998874
No 375
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.41 E-value=0.00069 Score=54.14 Aligned_cols=57 Identities=11% Similarity=0.218 Sum_probs=37.4
Q ss_pred CCeEEEEEcCC-CCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccceeEE
Q 019145 154 PPYKIIILDEA-DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFR 210 (345)
Q Consensus 154 ~~~~iliiDE~-~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~~i~ 210 (345)
.++.+++-||- .++.++....+++++++.......|+.++....+...+..|+-.++
T Consensus 154 ~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~ 211 (223)
T COG2884 154 NQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALE 211 (223)
T ss_pred cCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEe
Confidence 35679999995 5788998889999998765433333333344455566666655443
No 376
>PRK06547 hypothetical protein; Provisional
Probab=97.41 E-value=0.00033 Score=56.34 Aligned_cols=31 Identities=35% Similarity=0.359 Sum_probs=24.8
Q ss_pred HHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 76 TLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 76 ~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
.+..+....+.+.|++|+||||+++.+++.+
T Consensus 9 ~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 9 RLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444444447889999999999999999986
No 377
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.40 E-value=0.0017 Score=55.44 Aligned_cols=29 Identities=31% Similarity=0.392 Sum_probs=24.4
Q ss_pred CCCCcEEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 80 ANCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 80 ~~~~~lll~G~~G~GKT~la~~la~~l~~ 108 (345)
+....++|+||+|+|||++++.+++.+..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 34455899999999999999999998743
No 378
>PRK14527 adenylate kinase; Provisional
Probab=97.39 E-value=0.0034 Score=51.61 Aligned_cols=24 Identities=46% Similarity=0.834 Sum_probs=22.0
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++++||||+||||+++.+++.+
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 457999999999999999999887
No 379
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.39 E-value=0.0039 Score=53.91 Aligned_cols=50 Identities=26% Similarity=0.396 Sum_probs=37.2
Q ss_pred CCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
+.+++++--.+.....|..++.... ..++|+||+|+||||+++++...+.
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~~~~~-GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLEKPH-GIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhcCC-CEEEEECCCCCcHHHHHHHHHhhhC
Confidence 3455666445667777777765443 3589999999999999999988873
No 380
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.38 E-value=0.00062 Score=60.99 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=21.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+||+|+||||++..++..+
T Consensus 208 ii~lvGptGvGKTTt~akLA~~l 230 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLGWQL 230 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37999999999999999999876
No 381
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.38 E-value=0.0015 Score=52.45 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++|+||+|||++|..++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 47999999999999999999886
No 382
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.37 E-value=0.00069 Score=51.66 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=22.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~ 108 (345)
.++|.|+.|+||||+++.+++.+..
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 4799999999999999999999843
No 383
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.37 E-value=0.0051 Score=54.43 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++|+||+||||+++.+++.+
T Consensus 4 liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHC
Confidence 36899999999999999999986
No 384
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.37 E-value=0.0032 Score=57.73 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||++..++...
T Consensus 193 vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 193 VYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37999999999999999998764
No 385
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.36 E-value=0.0019 Score=50.43 Aligned_cols=94 Identities=16% Similarity=0.220 Sum_probs=52.9
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc------cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCe
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD------RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPY 156 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (345)
..+.|.||+|+||||+++.++....... .-+.++.... .+.... ..+.-.... ..+.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~----G~i~~~~~~~i~~~~~lS~G~~-~rv~laral------------~~~p 89 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPDE----GIVTWGSTVKIGYFEQLSGGEK-MRLALAKLL------------LENP 89 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCc----eEEEECCeEEEEEEccCCHHHH-HHHHHHHHH------------hcCC
Confidence 3479999999999999999987652111 1111111000 011111 111111111 1244
Q ss_pred EEEEEcCCC-CCCHHHHHHHHHHHhhcCCceEEEEecCcc
Q 019145 157 KIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (345)
Q Consensus 157 ~iliiDE~~-~l~~~~~~~l~~~le~~~~~~~ii~~~n~~ 195 (345)
.++++||.. .++......+.+++.+.. ..+++++...
T Consensus 90 ~illlDEP~~~LD~~~~~~l~~~l~~~~--~til~~th~~ 127 (144)
T cd03221 90 NLLLLDEPTNHLDLESIEALEEALKEYP--GTVILVSHDR 127 (144)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHcC--CEEEEEECCH
Confidence 699999964 678888888888887652 3456666543
No 386
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.36 E-value=0.0021 Score=51.38 Aligned_cols=100 Identities=15% Similarity=0.170 Sum_probs=53.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc--h-HHHHHH-----------HHHHHHhhhcCCCCC
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG--I-NVVRTK-----------IKTFAAVAVGSGQRR 148 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~--~-~~~~~~-----------~~~~~~~~~~~~~~~ 148 (345)
..+.|.||.|+||||+++.++...... ..-+.++..+... . ...+.. ........
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~~~----~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~lar------- 95 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYKPD----SGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIAR------- 95 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCC----CeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHH-------
Confidence 358999999999999999998765211 1112222211100 0 000000 00000000
Q ss_pred CCCCCCCeEEEEEcCCC-CCCHHHHHHHHHHHhhcC-CceEEEEecCcc
Q 019145 149 GGYPCPPYKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYI 195 (345)
Q Consensus 149 ~~~~~~~~~iliiDE~~-~l~~~~~~~l~~~le~~~-~~~~ii~~~n~~ 195 (345)
....+++++++||.. .++......+.+++.+.. ....+|+++...
T Consensus 96 --al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 142 (163)
T cd03216 96 --ALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142 (163)
T ss_pred --HHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 011245799999965 577777777777776542 234456666443
No 387
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.36 E-value=0.00024 Score=56.08 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
+++|+|+||+|||++++.++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999998
No 388
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=97.36 E-value=0.0029 Score=59.79 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=26.6
Q ss_pred CCCCeEEEEEcCCCC--CCHHHHHHHHHHHhhcCCceEEEEec
Q 019145 152 PCPPYKIIILDEADS--MTEDAQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 152 ~~~~~~iliiDE~~~--l~~~~~~~l~~~le~~~~~~~ii~~~ 192 (345)
...++.+|||||+|. +..+.+=.|++-+-......++|+.+
T Consensus 160 ~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimS 202 (674)
T KOG0922|consen 160 LLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMS 202 (674)
T ss_pred ccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 456889999999996 44555545554444444556677665
No 389
>PRK13808 adenylate kinase; Provisional
Probab=97.35 E-value=0.0047 Score=54.75 Aligned_cols=23 Identities=39% Similarity=0.803 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+||||+||||++..|+..+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~y 24 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQY 24 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999987
No 390
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.35 E-value=0.00086 Score=60.52 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=24.2
Q ss_pred CCCCcEEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 80 ANCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 80 ~~~~~lll~G~~G~GKT~la~~la~~l~~ 108 (345)
+....++|+||+|+|||++++.+++.+..
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 34445899999999999999999998743
No 391
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.35 E-value=0.0047 Score=54.44 Aligned_cols=48 Identities=25% Similarity=0.302 Sum_probs=35.2
Q ss_pred CCCCcccc--c--cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 57 PKQVKDVA--H--QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 57 p~~~~~~~--g--~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
+.++++++ | .+.....|..++..+ .+++++||+|+||||+++++...+
T Consensus 105 ~~tl~~l~~~g~~~~~~~~~L~~~v~~~--~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 105 VFTLDDYVEAGIMTAAQRDVLREAVLAR--KNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CCCHHHHHhcCCCCHHHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHHh
Confidence 34555554 2 244556677777643 479999999999999999999887
No 392
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.34 E-value=0.005 Score=54.68 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=22.1
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++++||+|+||||+++++...+
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~ 168 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEI 168 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccC
Confidence 479999999999999999998876
No 393
>PRK02496 adk adenylate kinase; Provisional
Probab=97.32 E-value=0.0025 Score=51.96 Aligned_cols=23 Identities=48% Similarity=0.992 Sum_probs=21.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++||||+||||+++.+++.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999987
No 394
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.32 E-value=0.0007 Score=55.74 Aligned_cols=57 Identities=12% Similarity=0.150 Sum_probs=34.3
Q ss_pred CeEEEEEcCCCCCCH-H------HHHHHHHHHh-hcCCceEEEEecCcccccchhhhccce-eEEec
Q 019145 155 PYKIIILDEADSMTE-D------AQNALRRTME-TYSKVTRFFFICNYISRIIEPLASRCA-KFRFK 212 (345)
Q Consensus 155 ~~~iliiDE~~~l~~-~------~~~~l~~~le-~~~~~~~ii~~~n~~~~l~~~l~~r~~-~i~~~ 212 (345)
...++||||++.+.+ . ....+ +.+. .+....-++++|-.+..+++.++..++ .+++.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~-~~l~~hRh~g~diiliTQ~~~~id~~ir~lve~~~~~~ 144 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEII-EFLAQHRHYGWDIILITQSPSQIDKFIRDLVEYHYHCR 144 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHH-HGGGGCCCTT-EEEEEES-GGGB-HHHHCCEEEEEEEE
T ss_pred CCcEEEEECChhhcCCCccccccchHHH-HHHHHhCcCCcEEEEEeCCHHHHhHHHHHHHheEEEEE
Confidence 346999999997632 1 12333 5554 344567789999888999998887766 34443
No 395
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.31 E-value=0.00019 Score=54.62 Aligned_cols=22 Identities=45% Similarity=0.644 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|.|+||+||||+++.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999985
No 396
>PRK10867 signal recognition particle protein; Provisional
Probab=97.31 E-value=0.027 Score=52.13 Aligned_cols=23 Identities=43% Similarity=0.534 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
++++|++|+||||++..+|..+.
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~ 125 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLK 125 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 69999999999999999998774
No 397
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.30 E-value=0.0025 Score=53.21 Aligned_cols=44 Identities=23% Similarity=0.439 Sum_probs=30.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (345)
+.++||||+|||+++..++...... +..++.++... .....+.+
T Consensus 15 ~~i~G~~GsGKT~l~~~~~~~~~~~---g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 15 TQIYGPPGSGKTNICMILAVNAARQ---GKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCC-CCHHHHHH
Confidence 6999999999999999998876332 34566666653 33444433
No 398
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.30 E-value=0.0036 Score=56.46 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=22.5
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
..++++||+|+||||+++++...+.
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4689999999999999999998873
No 399
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.30 E-value=0.0022 Score=50.84 Aligned_cols=98 Identities=18% Similarity=0.248 Sum_probs=53.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc--hHHH--------------HHHHHHHHHhhhcCCC
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG--INVV--------------RTKIKTFAAVAVGSGQ 146 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~--~~~~--------------~~~~~~~~~~~~~~~~ 146 (345)
..+.|.||+|+||||++++++..+.. ...-+.++...... .... ...+.- ...
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~----~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l-~~~------ 94 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKP----TSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVAL-ARA------ 94 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC----CccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHH-HHH------
Confidence 34799999999999999999876521 11112232211000 0000 000000 000
Q ss_pred CCCCCCCCCeEEEEEcCCC-CCCHHHHHHHHHHHhhcCC-ceEEEEecCccc
Q 019145 147 RRGGYPCPPYKIIILDEAD-SMTEDAQNALRRTMETYSK-VTRFFFICNYIS 196 (345)
Q Consensus 147 ~~~~~~~~~~~iliiDE~~-~l~~~~~~~l~~~le~~~~-~~~ii~~~n~~~ 196 (345)
...+..++++||.. .++......+.+.+.+... ...+++++....
T Consensus 95 -----l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 141 (157)
T cd00267 95 -----LLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE 141 (157)
T ss_pred -----HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 01234699999976 5777777777777765433 244566665433
No 400
>PRK13949 shikimate kinase; Provisional
Probab=97.30 E-value=0.00028 Score=56.74 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=22.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
+++|+|+||+||||+++.+++.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999998
No 401
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.30 E-value=0.00026 Score=56.05 Aligned_cols=32 Identities=25% Similarity=0.416 Sum_probs=27.7
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeee
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 120 (345)
.+++|.|++|+||||+.+.+|+.+ +.+|+..+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L------~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKAL------NLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHc------CCCcccch
Confidence 469999999999999999999999 66666544
No 402
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.30 E-value=0.00058 Score=59.74 Aligned_cols=24 Identities=38% Similarity=0.606 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.++|+||+|+||||++..++..+.
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998873
No 403
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.012 Score=52.64 Aligned_cols=49 Identities=10% Similarity=0.029 Sum_probs=36.4
Q ss_pred ceeEEecCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHhcCCCHHHHH
Q 019145 206 CAKFRFKPLSEEVMSSRVLHICNEEGLN---LDAEALSTLSSISQGDLRRAI 254 (345)
Q Consensus 206 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~---i~~~~~~~l~~~s~g~~r~~~ 254 (345)
+..++..+++.+|...++..+....-+. ..++....+.-.|+||++.+.
T Consensus 403 f~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLSngNP~l~~ 454 (461)
T KOG3928|consen 403 FVPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLSNGNPSLME 454 (461)
T ss_pred cCccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhcCCCHHHHH
Confidence 3467888999999999998887653221 346778888888999995543
No 404
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.29 E-value=0.0021 Score=70.08 Aligned_cols=123 Identities=16% Similarity=0.211 Sum_probs=70.6
Q ss_pred ccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHH-------HH
Q 019145 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK-------TF 137 (345)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 137 (345)
........+..++... ....++.|++|||||++++.+...+... +..++-+.+ .......+.+... .+
T Consensus 430 Ls~~Q~~Av~~il~s~-~~v~ii~G~aGTGKTt~l~~l~~~~~~~---G~~V~~lAP-TgrAA~~L~e~~g~~A~Ti~~~ 504 (1960)
T TIGR02760 430 LSPSNKDAVSTLFTST-KRFIIINGFGGTGSTEIAQLLLHLASEQ---GYEIQIITA-GSLSAQELRQKIPRLASTFITW 504 (1960)
T ss_pred CCHHHHHHHHHHHhCC-CCeEEEEECCCCCHHHHHHHHHHHHHhc---CCeEEEEeC-CHHHHHHHHHHhcchhhhHHHH
Confidence 3455556666555543 2347999999999999999998876322 334444433 2222222222111 00
Q ss_pred HHhhhcCCC-------CCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCc
Q 019145 138 AAVAVGSGQ-------RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (345)
Q Consensus 138 ~~~~~~~~~-------~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~ 194 (345)
......... ........+.++|||||+.+++......|++.... .+..+|++++.
T Consensus 505 l~~l~~~~~~~tv~~fl~~~~~l~~~~vlIVDEAsMl~~~~~~~Ll~~a~~--~garvVlvGD~ 566 (1960)
T TIGR02760 505 VKNLFNDDQDHTVQGLLDKSSPFSNKDIFVVDEANKLSNNELLKLIDKAEQ--HNSKLILLNDS 566 (1960)
T ss_pred HHhhcccccchhHHHhhcccCCCCCCCEEEEECCCCCCHHHHHHHHHHHhh--cCCEEEEEcCh
Confidence 000000000 00011224567999999999999988888887754 34678888753
No 405
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.29 E-value=0.0065 Score=47.64 Aligned_cols=122 Identities=14% Similarity=0.188 Sum_probs=65.5
Q ss_pred eCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC-CccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCC
Q 019145 88 YGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS-DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADS 166 (345)
Q Consensus 88 ~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~ 166 (345)
.+.+||||||++.+|.+-+.. +..+.=+.- .......+...+..+.. ....+||.|-=..
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-----wgHvQnDnI~~k~~~~f~~~~l~~L~~--------------~~~~vViaDRNNh 65 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-----WGHVQNDNITGKRKPKFIKAVLELLAK--------------DTHPVVIADRNNH 65 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-----CCccccCCCCCCCHHHHHHHHHHHHhh--------------CCCCEEEEeCCCc
Confidence 578999999999999988720 222211111 11122222233333211 2346999997665
Q ss_pred CCHHHHHHHHHHHhhcCC-------ceEEEEec---Cc-ccc----cchhhhccce---eEEecCCCHHHHHHHHHHHHH
Q 019145 167 MTEDAQNALRRTMETYSK-------VTRFFFIC---NY-ISR----IIEPLASRCA---KFRFKPLSEEVMSSRVLHICN 228 (345)
Q Consensus 167 l~~~~~~~l~~~le~~~~-------~~~ii~~~---n~-~~~----l~~~l~~r~~---~i~~~~~~~~~~~~~l~~~~~ 228 (345)
... ....|+..++.... ++++|... +. ... ..+.+..|++ .+.........+..++..+++
T Consensus 66 ~~r-eR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~ 144 (168)
T PF08303_consen 66 QKR-ERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIK 144 (168)
T ss_pred hHH-HHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHH
Confidence 543 33445555554333 56666554 22 111 2345555664 566666666777777777665
Q ss_pred H
Q 019145 229 E 229 (345)
Q Consensus 229 ~ 229 (345)
.
T Consensus 145 r 145 (168)
T PF08303_consen 145 R 145 (168)
T ss_pred h
Confidence 4
No 406
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.28 E-value=0.00031 Score=47.16 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=20.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+.+.|++|+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999986
No 407
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=97.26 E-value=0.0024 Score=58.31 Aligned_cols=92 Identities=17% Similarity=0.283 Sum_probs=56.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEc
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILD 162 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiD 162 (345)
-|++=.||.|||||++-+.+.. ..+-++++.. +. ..++-+......+ .-+.+++|++|
T Consensus 209 ~NliELgPrGTGKS~vy~eiSp----------~~~liSGG~~-T~---A~LFyn~~~~~~G--------lV~~~D~VafD 266 (457)
T PF13337_consen 209 YNLIELGPRGTGKSYVYKEISP----------YGILISGGQV-TV---AKLFYNMSTGQIG--------LVGRWDVVAFD 266 (457)
T ss_pred cceEEEcCCCCCceeehhhcCc----------ccEEEECCCc-ch---HHheeeccCCcce--------eeeeccEEEEE
Confidence 3688899999999999776632 2333454432 11 1222211111111 11356799999
Q ss_pred CCCCCC---HHHHHHHHHHHhhcC---------CceEEEEecCccc
Q 019145 163 EADSMT---EDAQNALRRTMETYS---------KVTRFFFICNYIS 196 (345)
Q Consensus 163 E~~~l~---~~~~~~l~~~le~~~---------~~~~ii~~~n~~~ 196 (345)
|+..+. ++....|..+|++.. ....+++++|...
T Consensus 267 Ev~~i~f~d~d~i~imK~YMesG~fsRG~~~i~a~as~vf~GNi~~ 312 (457)
T PF13337_consen 267 EVAGIKFKDKDEIQIMKDYMESGSFSRGKEEINADASMVFVGNINQ 312 (457)
T ss_pred eccCcccCChHHHHHHHHHHhccceeecccccccceeEEEEcCcCC
Confidence 999875 566677888887532 4577899887553
No 408
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.26 E-value=0.0026 Score=55.09 Aligned_cols=93 Identities=20% Similarity=0.297 Sum_probs=46.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeec-------C---CccchHHHHHHHHHHHHhhhcCCCCCCCCCC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA-------S---DDRGINVVRTKIKTFAAVAVGSGQRRGGYPC 153 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~-------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (345)
-++|+|-||+|||++++.|...+... +..+..++. . +.......+..+.........
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~---~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls---------- 69 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEK---GKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALS---------- 69 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHT---T--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHT----------
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhc---CCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhc----------
Confidence 47999999999999999999987432 222322221 1 112233344444444333332
Q ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEe
Q 019145 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFI 191 (345)
Q Consensus 154 ~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~ 191 (345)
+..+||+|+..++ +...-.|+.+-........+|.+
T Consensus 70 -~~~iVI~Dd~nYi-Kg~RYelyclAr~~~~~~c~i~~ 105 (270)
T PF08433_consen 70 -KDTIVILDDNNYI-KGMRYELYCLARAYGTTFCVIYC 105 (270)
T ss_dssp -T-SEEEE-S---S-HHHHHHHHHHHHHTT-EEEEEEE
T ss_pred -cCeEEEEeCCchH-HHHHHHHHHHHHHcCCCEEEEEE
Confidence 2369999998765 34455566655554444334433
No 409
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.26 E-value=0.0011 Score=53.50 Aligned_cols=23 Identities=48% Similarity=0.559 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
++++|+||+|||+++..++..+.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~ 25 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998873
No 410
>PRK06217 hypothetical protein; Validated
Probab=97.26 E-value=0.00034 Score=57.12 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=21.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|.|++|+||||+++.|++.+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999998
No 411
>PF13479 AAA_24: AAA domain
Probab=97.25 E-value=0.00025 Score=59.43 Aligned_cols=20 Identities=55% Similarity=1.077 Sum_probs=18.1
Q ss_pred cEEEeCCCCCCHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIA 103 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la 103 (345)
.++|||+||+|||+++..+-
T Consensus 5 ~~lIyG~~G~GKTt~a~~~~ 24 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASLP 24 (213)
T ss_pred EEEEECCCCCCHHHHHHhCC
Confidence 48999999999999998883
No 412
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.25 E-value=0.00033 Score=55.09 Aligned_cols=22 Identities=36% Similarity=0.655 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|+|+||+||||+++.+++.+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 6899999999999999999986
No 413
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.23 E-value=0.0015 Score=56.72 Aligned_cols=23 Identities=48% Similarity=0.673 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
+.|+||+|+||||++..+|..+.
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~ 97 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLK 97 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 68889999999999999998873
No 414
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.23 E-value=0.0049 Score=49.64 Aligned_cols=43 Identities=21% Similarity=0.344 Sum_probs=30.2
Q ss_pred CeEEEEEcCCC-CCCHHHHHHHHHHHhhcCCceEEEEecCcccc
Q 019145 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYISR 197 (345)
Q Consensus 155 ~~~iliiDE~~-~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~ 197 (345)
+.+++++||.. .++......+.+++.+......+|+++.....
T Consensus 114 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 157 (171)
T cd03228 114 DPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLST 157 (171)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHH
Confidence 55799999954 67777778888887765444556677765443
No 415
>PRK14530 adenylate kinase; Provisional
Probab=97.22 E-value=0.00042 Score=58.15 Aligned_cols=24 Identities=38% Similarity=0.800 Sum_probs=22.4
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
+.++|.||||+||||+++.|++.+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999998
No 416
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.22 E-value=0.0016 Score=57.34 Aligned_cols=23 Identities=35% Similarity=0.676 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++||+|+|||+++..+++.+
T Consensus 6 ~i~i~GptgsGKt~la~~la~~~ 28 (307)
T PRK00091 6 VIVIVGPTASGKTALAIELAKRL 28 (307)
T ss_pred EEEEECCCCcCHHHHHHHHHHhC
Confidence 47999999999999999999987
No 417
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.20 E-value=0.0044 Score=48.75 Aligned_cols=20 Identities=45% Similarity=0.818 Sum_probs=19.0
Q ss_pred EeCCCCCCHHHHHHHHHHHh
Q 019145 87 FYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 87 l~G~~G~GKT~la~~la~~l 106 (345)
+.||||+||||+++.+++.+
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999997
No 418
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.19 E-value=0.0052 Score=51.53 Aligned_cols=22 Identities=45% Similarity=0.819 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++++||||+||||+++.+++.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999999999987
No 419
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.18 E-value=0.0026 Score=59.32 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||++..|+..+
T Consensus 258 Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 258 VFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred EEEEECCCCccHHHHHHHHHHHH
Confidence 37999999999999999999876
No 420
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.18 E-value=0.038 Score=51.10 Aligned_cols=145 Identities=18% Similarity=0.150 Sum_probs=68.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHh---hhcCC---CCCC--------C
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV---AVGSG---QRRG--------G 150 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~--------~ 150 (345)
++++|++|+||||++..+|..+.... +..+..+++...+.. ....+...... +.... ..+. .
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~~~--g~kV~lV~~D~~R~~--a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKKKQ--GKKVLLVACDLYRPA--AIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhC--CCeEEEEeccccchH--HHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 69999999999999999998863222 234444444332221 11111111110 00000 0000 0
Q ss_pred CCCCCeEEEEEcCCCCCC--HHHHHHHHHHHhhc-CCceEEEEecCcccc---cchhhhccce--eEEecCCCHHHHHHH
Q 019145 151 YPCPPYKIIILDEADSMT--EDAQNALRRTMETY-SKVTRFFFICNYISR---IIEPLASRCA--KFRFKPLSEEVMSSR 222 (345)
Q Consensus 151 ~~~~~~~iliiDE~~~l~--~~~~~~l~~~le~~-~~~~~ii~~~n~~~~---l~~~l~~r~~--~i~~~~~~~~~~~~~ 222 (345)
.....+++||||=...+. ......+..+.+.. +..+.+|+-+..... ....+..++. -+-+..++.+.....
T Consensus 178 ~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~~~v~i~giIlTKlD~~~~~G~ 257 (428)
T TIGR00959 178 AKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLGLTGVVLTKLDGDARGGA 257 (428)
T ss_pred HHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHHHhhCCCCEEEEeCccCcccccH
Confidence 012356799999988774 33444444443332 233334443322211 1223333322 344666665555555
Q ss_pred HHHHHHHhCCC
Q 019145 223 VLHICNEEGLN 233 (345)
Q Consensus 223 l~~~~~~~~~~ 233 (345)
+...+...+++
T Consensus 258 ~lsi~~~~~~P 268 (428)
T TIGR00959 258 ALSVRSVTGKP 268 (428)
T ss_pred HHHHHHHHCcC
Confidence 55555544443
No 421
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.18 E-value=0.0048 Score=49.86 Aligned_cols=25 Identities=44% Similarity=0.521 Sum_probs=21.7
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l 106 (345)
...+.|.||.|+||||+++.++..+
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3457999999999999999998765
No 422
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.17 E-value=0.022 Score=47.20 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.3
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHH
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~ 105 (345)
...+++.|++|+|||++++.+...
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcc
Confidence 356899999999999999999875
No 423
>PLN02674 adenylate kinase
Probab=97.17 E-value=0.0084 Score=50.92 Aligned_cols=25 Identities=32% Similarity=0.647 Sum_probs=22.8
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+++|.||||+||+|.++.+++.+
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 4569999999999999999999987
No 424
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.17 E-value=0.00039 Score=55.53 Aligned_cols=22 Identities=45% Similarity=0.773 Sum_probs=20.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++++||+|+||||+++.+++.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999987
No 425
>PRK06696 uridine kinase; Validated
Probab=97.16 E-value=0.00079 Score=56.82 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHHHc---CCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 66 QEEVVRVLTNTLET---ANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 66 ~~~~~~~l~~~l~~---~~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
+.++++.|...+.. +....+.+.|++|+||||+|+.|+..+.
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34566777777753 2223368999999999999999999984
No 426
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.15 E-value=0.0029 Score=53.87 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=20.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++++|+||+|||+++..++...
T Consensus 28 ~~i~G~~GsGKt~l~~~~~~~~ 49 (234)
T PRK06067 28 ILIEGDHGTGKSVLSQQFVYGA 49 (234)
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7999999999999999997764
No 427
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.14 E-value=0.0053 Score=53.45 Aligned_cols=22 Identities=32% Similarity=0.703 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++++||+|+|||+++..+++.+
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~ 23 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKL 23 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999999987
No 428
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.14 E-value=0.0064 Score=49.32 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=30.2
Q ss_pred CCeEEEEEcCCC-CCCHHHHHHHHHHHhhcCCceEEEEecCcccc
Q 019145 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYISR 197 (345)
Q Consensus 154 ~~~~iliiDE~~-~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~ 197 (345)
.+++++++||.. .++......+.+.+.+......+|+++.....
T Consensus 115 ~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~ 159 (178)
T cd03247 115 QDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTG 159 (178)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 356799999964 67777777787777765444556666655443
No 429
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.14 E-value=0.00047 Score=53.47 Aligned_cols=22 Identities=45% Similarity=0.699 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+.+.|||||||||+++.++..+
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~ 24 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHL 24 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHh
Confidence 5789999999999999999998
No 430
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.14 E-value=0.0022 Score=60.91 Aligned_cols=41 Identities=17% Similarity=0.219 Sum_probs=31.4
Q ss_pred CCeEEEEEcCCC-CCCHHHHHHHHHHHhhcCCceEEEEecCc
Q 019145 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNY 194 (345)
Q Consensus 154 ~~~~iliiDE~~-~l~~~~~~~l~~~le~~~~~~~ii~~~n~ 194 (345)
.+++++|+||+- .++++....+.+.+.+.-+.+.+|-++..
T Consensus 532 ~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr 573 (604)
T COG4178 532 HKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHR 573 (604)
T ss_pred cCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccc
Confidence 467899999985 57888999999999875455666766643
No 431
>PRK14531 adenylate kinase; Provisional
Probab=97.13 E-value=0.00059 Score=55.67 Aligned_cols=23 Identities=43% Similarity=0.806 Sum_probs=21.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++||||+||||+++.+++.+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999997
No 432
>PRK13948 shikimate kinase; Provisional
Probab=97.12 E-value=0.00073 Score=54.83 Aligned_cols=33 Identities=18% Similarity=0.317 Sum_probs=27.7
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeee
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 120 (345)
..+++|.|.+|+||||+++.+++.+ +..++..+
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~l------g~~~iD~D 42 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRAL------MLHFIDTD 42 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHc------CCCEEECC
Confidence 4568999999999999999999998 66666544
No 433
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.12 E-value=0.008 Score=51.94 Aligned_cols=25 Identities=40% Similarity=0.616 Sum_probs=22.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
..+.|+||+|+|||+++..++..+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~ 100 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFH 100 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4589999999999999999998863
No 434
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.11 E-value=0.0032 Score=55.95 Aligned_cols=23 Identities=43% Similarity=0.538 Sum_probs=21.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
+.|.||+|+||||++..++..+.
T Consensus 117 i~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 117 ILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 68999999999999999999874
No 435
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.10 E-value=0.0048 Score=50.15 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=29.1
Q ss_pred CCeEEEEEcCCC-CCCHHHHHHHHHHHhhcCC--ceEEEEecCccc
Q 019145 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSK--VTRFFFICNYIS 196 (345)
Q Consensus 154 ~~~~iliiDE~~-~l~~~~~~~l~~~le~~~~--~~~ii~~~n~~~ 196 (345)
.+++++++||.- .++......+.+.+.+... ...+|+++....
T Consensus 114 ~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~ 159 (180)
T cd03214 114 QEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN 159 (180)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 356799999965 6777777788777776433 345666665433
No 436
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.10 E-value=0.0046 Score=56.11 Aligned_cols=49 Identities=31% Similarity=0.428 Sum_probs=31.6
Q ss_pred HHHHHHHHcCCCCc--EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 71 RVLTNTLETANCPH--MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 71 ~~l~~~l~~~~~~~--lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
..|-+.+..+-.+. ++|+|+||+|||+++..++..+... +..++.++..
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~---g~~VlYvs~E 119 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR---GGKVLYVSGE 119 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEECC
Confidence 34444454443332 6999999999999999998876322 2345555543
No 437
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.10 E-value=0.00068 Score=55.46 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=22.0
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
+.+++.||||+||||+++.+++.+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 457999999999999999999887
No 438
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=97.09 E-value=0.002 Score=57.10 Aligned_cols=132 Identities=17% Similarity=0.215 Sum_probs=70.6
Q ss_pred ccccc-cHHHHHHHHHHHHc---C-CC-Cc-EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHH
Q 019145 61 KDVAH-QEEVVRVLTNTLET---A-NC-PH-MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK 133 (345)
Q Consensus 61 ~~~~g-~~~~~~~l~~~l~~---~-~~-~~-lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (345)
.++.+ .++....+.+++.. + .. .. ++|+|+.|+|||++++.+..-+ +... .....+ .......+
T Consensus 48 ~~~~~~d~~~~~~l~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~~~l~~l~-G~~~-----~~~~~~--~~~~~~~~- 118 (304)
T TIGR01613 48 LETFGGDNELIEYLQRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQNLLSNLL-GDYA-----TTAVAS--LKMNEFQE- 118 (304)
T ss_pred HHHhCCCHHHHHHHHHHHhHHhcCCCCceEEEEEECCCCCcHHHHHHHHHHHh-Chhh-----ccCCcc--hhhhhccC-
Confidence 33443 44556666666532 1 11 12 6999999999999999886655 3211 000000 00000000
Q ss_pred HHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhh--------------cCCceEEEEecCccccc-
Q 019145 134 IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMET--------------YSKVTRFFFICNYISRI- 198 (345)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~--------------~~~~~~ii~~~n~~~~l- 198 (345)
..+.. .......++++||++.-.....+.|..+... ......+|+++|....+
T Consensus 119 -~~f~~-----------a~l~gk~l~~~~E~~~~~~~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~ 186 (304)
T TIGR01613 119 -HRFGL-----------ARLEGKRAVIGDEVQKGYRDDESTFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIR 186 (304)
T ss_pred -CCchh-----------hhhcCCEEEEecCCCCCccccHHhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccC
Confidence 00000 0112456999999875433233444444431 11356688889876654
Q ss_pred --chhhhccceeEEecC
Q 019145 199 --IEPLASRCAKFRFKP 213 (345)
Q Consensus 199 --~~~l~~r~~~i~~~~ 213 (345)
..++.+|..++.|..
T Consensus 187 ~~~~a~~RR~~vi~f~~ 203 (304)
T TIGR01613 187 GFDGGIKRRLRIIPFTK 203 (304)
T ss_pred CCChhheeeEEEEeccC
Confidence 467888998888854
No 439
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.09 E-value=0.0044 Score=55.27 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.3
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l 106 (345)
+..++|||..|||||++.-.+..++
T Consensus 114 PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 114 PKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CceEEEecccCcchhHHHHHHhhcC
Confidence 3459999999999999998887665
No 440
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.09 E-value=0.00062 Score=55.10 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+|+||+||||+++.+++.+
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 47999999999999999999986
No 441
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.09 E-value=0.0094 Score=50.05 Aligned_cols=35 Identities=37% Similarity=0.653 Sum_probs=26.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
++++|+||+|||+++..++...... +..++.++..
T Consensus 22 ~~i~G~~GsGKT~l~~~~a~~~~~~---g~~v~yi~~e 56 (218)
T cd01394 22 TQVYGPPGTGKTNIAIQLAVETAGQ---GKKVAYIDTE 56 (218)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEECC
Confidence 6999999999999999999887332 3455556554
No 442
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.08 E-value=0.0084 Score=48.38 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=28.2
Q ss_pred CeEEEEEcCCC-CCCHHHHHHHHHHHhhcCC-ceEEEEecCccc
Q 019145 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSK-VTRFFFICNYIS 196 (345)
Q Consensus 155 ~~~iliiDE~~-~l~~~~~~~l~~~le~~~~-~~~ii~~~n~~~ 196 (345)
+.+++++||.- .++......+.+++.+... ...+|+++....
T Consensus 114 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 157 (173)
T cd03246 114 NPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE 157 (173)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 55799999965 6777777777777765432 345666665543
No 443
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.07 E-value=0.0036 Score=50.58 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=27.3
Q ss_pred eEEEEEcCCC-CCCHHHHHHHHHHHhhcC-CceEEEEecCccc
Q 019145 156 YKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYIS 196 (345)
Q Consensus 156 ~~iliiDE~~-~l~~~~~~~l~~~le~~~-~~~~ii~~~n~~~ 196 (345)
.+++++||.- .++......+.+.+.+.. ....+|+++....
T Consensus 108 p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~ 150 (176)
T cd03238 108 GTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLD 150 (176)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 6899999964 577777777777776542 2345666665543
No 444
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.07 E-value=0.00099 Score=59.68 Aligned_cols=29 Identities=28% Similarity=0.332 Sum_probs=24.9
Q ss_pred CCCCcEEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 80 ANCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 80 ~~~~~lll~G~~G~GKT~la~~la~~l~~ 108 (345)
+.....+|+||+|||||++++.+++.+..
T Consensus 131 GkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 131 GKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45556999999999999999999998743
No 445
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.07 E-value=0.0019 Score=53.26 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.5
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+.|.||+|+||||+++.++...
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999998865
No 446
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=97.06 E-value=0.0058 Score=57.11 Aligned_cols=42 Identities=19% Similarity=0.160 Sum_probs=29.8
Q ss_pred cHHHHHHHHHHHHcCC-CCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 66 QEEVVRVLTNTLETAN-CPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~-~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
++....++..|..... ....++.-|+|+|||.++..++..+.
T Consensus 38 r~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~ 80 (442)
T COG1061 38 RPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK 80 (442)
T ss_pred cHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc
Confidence 4444455555554322 34589999999999999999999883
No 447
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.06 E-value=0.0069 Score=62.84 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
......|...+..+. .++++|++|+||||.+=.+..+.
T Consensus 69 ~~~~~~Il~~l~~~~--vvii~g~TGSGKTTqlPq~lle~ 106 (1283)
T TIGR01967 69 SAKREDIAEAIAENQ--VVIIAGETGSGKTTQLPKICLEL 106 (1283)
T ss_pred HHHHHHHHHHHHhCc--eEEEeCCCCCCcHHHHHHHHHHc
Confidence 334466666776544 58999999999999886666554
No 448
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.06 E-value=0.00082 Score=54.19 Aligned_cols=24 Identities=38% Similarity=0.682 Sum_probs=22.4
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++|.|++|+||||+++.+++.+
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHc
Confidence 468999999999999999999987
No 449
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.06 E-value=0.049 Score=47.06 Aligned_cols=37 Identities=27% Similarity=0.467 Sum_probs=27.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
-+|++||+|+||||+..++...++... ...++.+..+
T Consensus 127 LILVTGpTGSGKSTTlAamId~iN~~~--~~HIlTIEDP 163 (353)
T COG2805 127 LILVTGPTGSGKSTTLAAMIDYINKHK--AKHILTIEDP 163 (353)
T ss_pred eEEEeCCCCCcHHHHHHHHHHHHhccC--CcceEEecCc
Confidence 379999999999999999999985432 3445555443
No 450
>PRK05973 replicative DNA helicase; Provisional
Probab=97.05 E-value=0.003 Score=53.36 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=20.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++.|+||+|||+++..++...
T Consensus 67 ~LIaG~PG~GKT~lalqfa~~~ 88 (237)
T PRK05973 67 VLLGARPGHGKTLLGLELAVEA 88 (237)
T ss_pred EEEEeCCCCCHHHHHHHHHHHH
Confidence 6999999999999999988766
No 451
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.04 E-value=0.00075 Score=56.94 Aligned_cols=23 Identities=30% Similarity=0.639 Sum_probs=21.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|.||||+||||+++.+++.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999997
No 452
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.03 E-value=0.00076 Score=54.52 Aligned_cols=23 Identities=48% Similarity=0.881 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|.||||+||||+|+.|++.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999996
No 453
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.02 E-value=0.0009 Score=53.91 Aligned_cols=31 Identities=32% Similarity=0.562 Sum_probs=25.8
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeee
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 119 (345)
.+++|+|++|+|||++++.+++.+ +..++..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l------g~~~~d~ 33 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL------GYRFVDT 33 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh------CCCEEEc
Confidence 358999999999999999999998 5555543
No 454
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=97.01 E-value=0.0049 Score=60.33 Aligned_cols=36 Identities=31% Similarity=0.373 Sum_probs=27.2
Q ss_pred ccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHH
Q 019145 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTAL 100 (345)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~ 100 (345)
.|.+++..+...+....+-+.++.||+|+|||.++-
T Consensus 239 ~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~ 274 (630)
T TIGR00643 239 AQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAA 274 (630)
T ss_pred HHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHH
Confidence 466677777666655555578999999999998764
No 455
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=97.01 E-value=0.059 Score=49.37 Aligned_cols=90 Identities=23% Similarity=0.290 Sum_probs=58.6
Q ss_pred EEEEEcCCCCCC--------HHHHHHHHHHHhhcC----CceEEEEecCccc--------ccchhhhccc----------
Q 019145 157 KIIILDEADSMT--------EDAQNALRRTMETYS----KVTRFFFICNYIS--------RIIEPLASRC---------- 206 (345)
Q Consensus 157 ~iliiDE~~~l~--------~~~~~~l~~~le~~~----~~~~ii~~~n~~~--------~l~~~l~~r~---------- 206 (345)
-+|++||++.+- .+..+.|++++++.. ++.-+++++++.. .-.++|.+|.
T Consensus 241 LlI~lDE~e~l~kl~~~~~R~~~ye~lr~lidd~~~G~~~gL~~~~~gTPef~eD~rrGv~sY~AL~~RL~~~~~~~~~~ 320 (416)
T PF10923_consen 241 LLILLDELENLYKLRNDQAREKNYEALRQLIDDIDQGRAPGLYFVFAGTPEFFEDGRRGVYSYEALAQRLAEEFFADDGF 320 (416)
T ss_pred eEEEEechHHHHhcCChHHHHHHHHHHHHHHHHHhcCCCCceEEEEeeCHHHhhCccccccccHHHHHHHhccccccccc
Confidence 489999998762 234678888887633 4566666653221 1134444432
Q ss_pred -----eeEEecCCCHHHHHHHHHHHHHH------hCCCCCHHHHHHHHHhc
Q 019145 207 -----AKFRFKPLSEEVMSSRVLHICNE------EGLNLDAEALSTLSSIS 246 (345)
Q Consensus 207 -----~~i~~~~~~~~~~~~~l~~~~~~------~~~~i~~~~~~~l~~~s 246 (345)
.++.+.|++.+++..++.+...- ....++++.+..+++.+
T Consensus 321 ~n~~~pvIrL~~l~~eel~~l~~klr~i~a~~~~~~~~v~d~~l~~~~~~~ 371 (416)
T PF10923_consen 321 DNLRAPVIRLQPLTPEELLELLEKLRDIYAEAYGYESRVDDEELKAFAQHV 371 (416)
T ss_pred cCccCceecCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH
Confidence 37889999999999888876542 12357888888887655
No 456
>PRK13946 shikimate kinase; Provisional
Probab=97.00 E-value=0.00088 Score=54.71 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=22.6
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++|+|++|+|||++++.+++.+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 469999999999999999999998
No 457
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.00 E-value=0.0065 Score=57.44 Aligned_cols=42 Identities=19% Similarity=0.340 Sum_probs=28.2
Q ss_pred CCCCCeEEEEEcCCCC--CCHHHHHHHHHHHhhcCCceEEEEec
Q 019145 151 YPCPPYKIIILDEADS--MTEDAQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 151 ~~~~~~~iliiDE~~~--l~~~~~~~l~~~le~~~~~~~ii~~~ 192 (345)
+..+++.|++|||+|. ++.+.+=.|.+-+....+...+++.+
T Consensus 374 pdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIsS 417 (902)
T KOG0923|consen 374 PDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLISS 417 (902)
T ss_pred ccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEeec
Confidence 3457899999999985 44555555555555555666666654
No 458
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.00 E-value=0.0078 Score=59.80 Aligned_cols=38 Identities=21% Similarity=0.294 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
......|...+.... .++|.||+|+||||-+-.+.-+.
T Consensus 52 ~~~~~~i~~ai~~~~--vvii~getGsGKTTqlP~~lle~ 89 (845)
T COG1643 52 TAVRDEILKAIEQNQ--VVIIVGETGSGKTTQLPQFLLEE 89 (845)
T ss_pred HHHHHHHHHHHHhCC--EEEEeCCCCCChHHHHHHHHHhh
Confidence 444566666666554 48999999999999887766554
No 459
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.00 E-value=0.0063 Score=56.82 Aligned_cols=49 Identities=31% Similarity=0.431 Sum_probs=32.0
Q ss_pred HHHHHHHHcCCCCc--EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 71 RVLTNTLETANCPH--MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 71 ~~l~~~l~~~~~~~--lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
..|-+.+..|-.+. ++|+|+||+|||+++..++...... +..++.++..
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~---g~~vlYvs~E 117 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA---GGKVLYVSGE 117 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEcc
Confidence 34444454443322 6999999999999999999876321 3355555543
No 460
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.97 E-value=0.0058 Score=57.59 Aligned_cols=50 Identities=24% Similarity=0.361 Sum_probs=37.6
Q ss_pred CCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
+.+++++--.++....+...+.... ..++++||+|+||||+++++.+.+.
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~~~-GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRRPH-GIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhcCC-CEEEEEcCCCCCHHHHHHHHHhccC
Confidence 4456666546777778877775443 3479999999999999999888874
No 461
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=96.97 E-value=0.0047 Score=49.38 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=18.1
Q ss_pred CcEEEeCCCCCCHHHHHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~ 104 (345)
.++++.||+|+|||..+...+-
T Consensus 15 ~~~li~aptGsGKT~~~~~~~l 36 (169)
T PF00270_consen 15 KNVLISAPTGSGKTLAYILPAL 36 (169)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCccHHHHHHHHH
Confidence 4699999999999998875443
No 462
>PRK10436 hypothetical protein; Provisional
Probab=96.96 E-value=0.0066 Score=56.64 Aligned_cols=50 Identities=20% Similarity=0.319 Sum_probs=36.6
Q ss_pred CCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~ 108 (345)
.+++++--.+.....+.+.+.... ..++++||+|+||||++.++.+.+..
T Consensus 195 ~~L~~LG~~~~~~~~l~~~~~~~~-GliLvtGpTGSGKTTtL~a~l~~~~~ 244 (462)
T PRK10436 195 LDLETLGMTPAQLAQFRQALQQPQ-GLILVTGPTGSGKTVTLYSALQTLNT 244 (462)
T ss_pred CCHHHcCcCHHHHHHHHHHHHhcC-CeEEEECCCCCChHHHHHHHHHhhCC
Confidence 355565445666777777765443 35899999999999999998888743
No 463
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.96 E-value=0.0087 Score=47.97 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=19.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
++++|++|+|||++|..++..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~ 22 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE 22 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 589999999999999999876
No 464
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.96 E-value=0.0016 Score=57.68 Aligned_cols=38 Identities=26% Similarity=0.463 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
+.....|..++..+ .+++++|++|+||||+++++...+
T Consensus 131 ~~~~~~L~~~v~~~--~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 131 EAQASVIRSAIDSR--LNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred HHHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHHH
Confidence 34456667777654 379999999999999999999886
No 465
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.96 E-value=0.014 Score=52.93 Aligned_cols=25 Identities=32% Similarity=0.323 Sum_probs=22.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
..++++||+|+||||+++++...+.
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~ 174 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCG 174 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999998874
No 466
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.016 Score=52.09 Aligned_cols=49 Identities=31% Similarity=0.453 Sum_probs=34.1
Q ss_pred HHHHHHHHcCCCCc--EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC
Q 019145 71 RVLTNTLETANCPH--MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (345)
Q Consensus 71 ~~l~~~l~~~~~~~--lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (345)
.++-+.+..+-.+. +|+-|.||.||||+.-.++..+... ..++++++..
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~----~~vLYVsGEE 130 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR----GKVLYVSGEE 130 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhc----CcEEEEeCCc
Confidence 45555565554443 6899999999999999998887432 2566666544
No 467
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.94 E-value=0.0098 Score=49.86 Aligned_cols=103 Identities=15% Similarity=0.158 Sum_probs=56.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCC---c-----------eeeeecCCccchHHHHHHHHHHHHhhhcCCCCCC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKS---R-----------VLELNASDDRGINVVRTKIKTFAAVAVGSGQRRG 149 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~---~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (345)
.++++|++|+|||+++..+.+.......... . .+.+..-|..+...++.....+...
T Consensus 7 kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~--------- 77 (219)
T COG1100 7 KIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRG--------- 77 (219)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcC---------
Confidence 3899999999999999999987754221110 0 1112222444445554444333211
Q ss_pred CCCCCCeEEEEEcCCC-CCCHHHHHHHHHHHhhcC-CceEEEEecCcccccc
Q 019145 150 GYPCPPYKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYISRII 199 (345)
Q Consensus 150 ~~~~~~~~iliiDE~~-~l~~~~~~~l~~~le~~~-~~~~ii~~~n~~~~l~ 199 (345)
+..-+++.|... .-..+....+...+.+.. ....++++.|..+...
T Consensus 78 ----~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (219)
T COG1100 78 ----ANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFD 125 (219)
T ss_pred ----CCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEeccccccc
Confidence 233456666554 233344444554444433 3577888888766543
No 468
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.94 E-value=0.0021 Score=56.91 Aligned_cols=48 Identities=27% Similarity=0.387 Sum_probs=38.2
Q ss_pred CCc-cccccHHHHHHHHHHHHcC------CCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 59 QVK-DVAHQEEVVRVLTNTLETA------NCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 59 ~~~-~~~g~~~~~~~l~~~l~~~------~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
.|+ ++.|-++.+..|.+.++.. ....++|.||+|+|||++++.+.+-+
T Consensus 58 ~f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 58 FFEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred CccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 344 8899988888887776542 22337999999999999999999887
No 469
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.93 E-value=0.01 Score=49.04 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=20.7
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|+||.|+||||+++.++...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 347999999999999999998644
No 470
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.93 E-value=0.0055 Score=57.94 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=20.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++++|+||+||||+++.++...
T Consensus 372 Vil~G~pGSGKST~A~~l~~~~ 393 (526)
T TIGR01663 372 VIAVGFPGAGKSHFCKKFFQPA 393 (526)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7999999999999999999875
No 471
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=96.93 E-value=0.0069 Score=48.14 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=19.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++.|++|+|||+++..+...-
T Consensus 3 i~vvG~~~vGKTsli~~~~~~~ 24 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMDG 24 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999887653
No 472
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.93 E-value=0.0017 Score=53.07 Aligned_cols=38 Identities=26% Similarity=0.270 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
+.....|...++.+. +++|.||+|+||||+++++...+
T Consensus 12 ~~~~~~l~~~v~~g~--~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 12 PLQAAYLWLAVEARK--NILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHHHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHhhc
Confidence 455566666666544 69999999999999999999876
No 473
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.92 E-value=0.02 Score=53.84 Aligned_cols=118 Identities=15% Similarity=0.179 Sum_probs=80.8
Q ss_pred eEEEEEcCCCCC--CHHHHHHHHHHHhhcC-CceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCC
Q 019145 156 YKIIILDEADSM--TEDAQNALRRTMETYS-KVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGL 232 (345)
Q Consensus 156 ~~iliiDE~~~l--~~~~~~~l~~~le~~~-~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~ 232 (345)
..++++.|+|.+ .+.....|.++..... ....+|+++ +...++..|.+-+.++.|+.|+.+|+..++...+...+.
T Consensus 82 ~~~~vl~d~h~~~~~~~~~r~l~~l~~~~~~~~~~~i~~~-~~~~~p~el~~~~~~~~~~lP~~~ei~~~l~~~~~~~~~ 160 (489)
T CHL00195 82 PALFLLKDFNRFLNDISISRKLRNLSRILKTQPKTIIIIA-SELNIPKELKDLITVLEFPLPTESEIKKELTRLIKSLNI 160 (489)
T ss_pred CcEEEEecchhhhcchHHHHHHHHHHHHHHhCCCEEEEEc-CCCCCCHHHHhceeEEeecCcCHHHHHHHHHHHHHhcCC
Confidence 359999999988 3333334444333221 122344444 345688889888889999999999999999998887788
Q ss_pred CCCHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCCCCHHHHHH
Q 019145 233 NLDAEALSTLSSISQGD-LRRAITYLQGAARLFGSSITSKDLIS 275 (345)
Q Consensus 233 ~i~~~~~~~l~~~s~g~-~r~~~~~l~~~~~~~~~~it~~~v~~ 275 (345)
.++++.++.+++.+.|- ...+.+.+.++. ...+.++.+++..
T Consensus 161 ~~~~~~~~~l~~~~~gls~~~~~~~~~~~~-~~~~~~~~~~~~~ 203 (489)
T CHL00195 161 KIDSELLENLTRACQGLSLERIRRVLSKII-ATYKTIDENSIPL 203 (489)
T ss_pred CCCHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHcCCCChhhHHH
Confidence 99999999999998764 444555555433 2344577765543
No 474
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.91 E-value=0.0052 Score=53.06 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=19.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++++||||+|||+++..++...
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~ 60 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQ 60 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6999999999999999987764
No 475
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=96.90 E-value=0.0032 Score=50.73 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=19.9
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.++|.||+|+|||++...+.+.-
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~ 27 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGK 27 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCC
Confidence 3568999999999999999998763
No 476
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.88 E-value=0.0012 Score=53.56 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=22.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.++|+|++|+||||+++.+++.+.
T Consensus 9 ~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 9 VIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 479999999999999999999983
No 477
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.87 E-value=0.012 Score=45.45 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+||||+++++.+++
T Consensus 14 ~i~vmGvsGsGKSTigk~L~~~l 36 (191)
T KOG3354|consen 14 VIVVMGVSGSGKSTIGKALSEEL 36 (191)
T ss_pred eEEEEecCCCChhhHHHHHHHHh
Confidence 37999999999999999999999
No 478
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.86 E-value=0.0038 Score=60.87 Aligned_cols=40 Identities=35% Similarity=0.544 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
+.....++..++... +.++++||||||||+++..++.++.
T Consensus 159 n~~Q~~Av~~~l~~~--~~~lI~GpPGTGKT~t~~~ii~~~~ 198 (637)
T TIGR00376 159 NESQKEAVSFALSSK--DLFLIHGPPGTGKTRTLVELIRQLV 198 (637)
T ss_pred CHHHHHHHHHHhcCC--CeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 566666776665432 3589999999999999988887763
No 479
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.85 E-value=0.006 Score=56.06 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
++|+|++|+||||++..+|..+.
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~ 125 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQ 125 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 69999999999999999998874
No 480
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.85 E-value=0.0085 Score=50.10 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.6
Q ss_pred CcEEEeCCCCCCHHHHHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~ 104 (345)
..++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 3489999999999999999984
No 481
>PRK08233 hypothetical protein; Provisional
Probab=96.85 E-value=0.00093 Score=54.33 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.+.|+||+||||+++.++..+
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 36889999999999999999987
No 482
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.85 E-value=0.0076 Score=58.06 Aligned_cols=49 Identities=16% Similarity=0.329 Sum_probs=36.5
Q ss_pred CCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.+++++--.+.....+.+.+.... ..++++||+|+||||+..++.+.+.
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~~~~-Glilv~G~tGSGKTTtl~a~l~~~~ 341 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIHKPQ-GMVLVTGPTGSGKTVSLYTALNILN 341 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHHHHHhhC
Confidence 345555446666777777665433 4579999999999999999988874
No 483
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.84 E-value=0.018 Score=46.03 Aligned_cols=110 Identities=18% Similarity=0.189 Sum_probs=54.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCC----C-CceeeeecCCccchHHHHHHHHHHHHhhhcCCCC----CCCCCCC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELY----K-SRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR----RGGYPCP 154 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 154 (345)
.+.|.||.|+||||+++.++..+....+. . ..+..+..........+.+.+..........++. .......
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~laral~~ 108 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARLLLH 108 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHHHHc
Confidence 47999999999999999998875211110 0 0011111100000011111111000000000000 0000123
Q ss_pred CeEEEEEcCCC-CCCHHHHHHHHHHHhhcCCceEEEEecCcc
Q 019145 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (345)
Q Consensus 155 ~~~iliiDE~~-~l~~~~~~~l~~~le~~~~~~~ii~~~n~~ 195 (345)
+++++++||.. .++......+.+.+.+. . ..+|+++...
T Consensus 109 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~-~-~tiiivsh~~ 148 (166)
T cd03223 109 KPKFVFLDEATSALDEESEDRLYQLLKEL-G-ITVISVGHRP 148 (166)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHh-C-CEEEEEeCCh
Confidence 56799999965 57788888888888775 2 4456666554
No 484
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.84 E-value=0.0091 Score=49.51 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=19.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~ 104 (345)
.++|+||.|+||||+.+.++.
T Consensus 31 ~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 31 LLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EEEEECCCCCccHHHHHHHHH
Confidence 489999999999999999984
No 485
>PRK04040 adenylate kinase; Provisional
Probab=96.84 E-value=0.001 Score=54.45 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++|+||+||||+++.++..+
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999987
No 486
>PLN02200 adenylate kinase family protein
Probab=96.84 E-value=0.0015 Score=55.47 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=21.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++|+||+||||+++.+++.+
T Consensus 45 ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 45 ITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999987
No 487
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=96.83 E-value=0.021 Score=45.50 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=19.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
.+++.|++|+|||+++..+...
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~ 25 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADD 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999764
No 488
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.82 E-value=0.0013 Score=54.87 Aligned_cols=22 Identities=45% Similarity=0.844 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++++||||+||||+++.++..+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999887
No 489
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.82 E-value=0.0008 Score=53.77 Aligned_cols=21 Identities=43% Similarity=0.589 Sum_probs=18.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
+.|+|++||||||+++.|++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999987
No 490
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.81 E-value=0.015 Score=46.91 Aligned_cols=41 Identities=12% Similarity=0.302 Sum_probs=27.6
Q ss_pred CeEEEEEcCCC-CCCHHHHHHHHHHHhhcCC-ceEEEEecCcc
Q 019145 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSK-VTRFFFICNYI 195 (345)
Q Consensus 155 ~~~iliiDE~~-~l~~~~~~~l~~~le~~~~-~~~ii~~~n~~ 195 (345)
+.+++++||.. .++......+.+++.+... ...+|+++...
T Consensus 113 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~ 155 (173)
T cd03230 113 DPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL 155 (173)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH
Confidence 55799999965 5677777778777776532 24456666543
No 491
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.81 E-value=0.0073 Score=50.01 Aligned_cols=20 Identities=30% Similarity=0.498 Sum_probs=18.9
Q ss_pred cEEEeCCCCCCHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIA 103 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la 103 (345)
.++|+||.|+||||+.+.++
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 48999999999999999998
No 492
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.78 E-value=0.0012 Score=53.56 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+||+|+||||+++.++..+
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 36899999999999999999886
No 493
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=96.77 E-value=0.018 Score=48.26 Aligned_cols=52 Identities=21% Similarity=0.301 Sum_probs=33.4
Q ss_pred CeEEEEEcC-CCCCCHHHHHHHHHHHhhc---CCceEEEEecCcccccchhhhccc
Q 019145 155 PYKIIILDE-ADSMTEDAQNALRRTMETY---SKVTRFFFICNYISRIIEPLASRC 206 (345)
Q Consensus 155 ~~~iliiDE-~~~l~~~~~~~l~~~le~~---~~~~~ii~~~n~~~~l~~~l~~r~ 206 (345)
.+.++|+|| +..+.....+.|++.+++. +....++++|-....+++-+..+.
T Consensus 189 ~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~l 244 (257)
T COG1119 189 DPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRL 244 (257)
T ss_pred CCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEE
Confidence 567999999 4556666666666666543 234557777777666666555443
No 494
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.77 E-value=0.018 Score=56.43 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=33.7
Q ss_pred ccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
.++...+.+..|...+...+-+++-|+|+|||.++-.++..+
T Consensus 256 LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l 297 (732)
T TIGR00603 256 IRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV 297 (732)
T ss_pred cCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh
Confidence 467777888888876655567888999999999998887765
No 495
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.017 Score=55.85 Aligned_cols=227 Identities=16% Similarity=0.125 Sum_probs=120.7
Q ss_pred hhhCCCCCccccccHHHHHHHHHH------HHcCCCCcEEEeC----CCCCCHHHHHHHHHHHhcC----CCCCCCceee
Q 019145 53 EKYRPKQVKDVAHQEEVVRVLTNT------LETANCPHMLFYG----PPGTGKTTTALAIAHQLFG----PELYKSRVLE 118 (345)
Q Consensus 53 ~~~~p~~~~~~~g~~~~~~~l~~~------l~~~~~~~lll~G----~~G~GKT~la~~la~~l~~----~~~~~~~~~~ 118 (345)
+.-+|..+.++.+++......... .......+...+| ++|++++.....+...... .......+.+
T Consensus 96 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~iv~~~~~~~~~~~~~~~~~~~~ 175 (647)
T COG1067 96 PAGRPESFSELLGQKAEEKAEYLSYLILLALLGPIEQQIILYGYNALLPGVLYAVAARIVLYEAKILKRSAVSVPKNFVE 175 (647)
T ss_pred cccCCcchHHHHHhhhhHHHHHHhhhhHHHhhchhhhhhhhcccccccchhhHHHHHHHHHhhhhcccchhhhhhhhhhh
Confidence 345666777777765544332222 1112223467777 9999999998766555310 0001111222
Q ss_pred eecCCcc-----chHHHHHHHHHHHHhhhcC--------CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc---
Q 019145 119 LNASDDR-----GINVVRTKIKTFAAVAVGS--------GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY--- 182 (345)
Q Consensus 119 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~--- 182 (345)
....+.. .......++.........+ ...++....+..+||||||+..|....+..+++.+.+.
T Consensus 176 ~~~~~~~p~v~a~~~~~~~LlG~Vr~~~~qG~l~~~~~~~i~pGaVHkAngGVLiIdei~lL~~~~~w~~LKa~~~k~~~ 255 (647)
T COG1067 176 LSPLDGAPVVFATGAIADQLLGSVRHDPYQGGLGTTGHIRVKPGAVHKANGGVLIIDEIGLLAQPLQWKLLKALLDKEQP 255 (647)
T ss_pred hccccCCcEEecCCCChhhcceeEEEcCCCCccCCCCcccccCcccccccCcEEEEEhhhhhCcHHHHHHHHHHHhcccc
Confidence 2100000 0001112222211111111 11334445678899999999999977777766666532
Q ss_pred ------------------CCceEEEEecCcc--cccchhhhcc---cee-EEecCC---CHHHHHHHHHHHHH---Hh-C
Q 019145 183 ------------------SKVTRFFFICNYI--SRIIEPLASR---CAK-FRFKPL---SEEVMSSRVLHICN---EE-G 231 (345)
Q Consensus 183 ------------------~~~~~ii~~~n~~--~~l~~~l~~r---~~~-i~~~~~---~~~~~~~~l~~~~~---~~-~ 231 (345)
|....+|+++|.. ..+.+...+| +.. ..|..+ +++...+.++.++. +. +
T Consensus 256 ~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l~~l~~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~~d~~ 335 (647)
T COG1067 256 IWGSSEPSSGAPVRPESVPLDLKLILAGNREDLEDLHEPDRSRIEGFGYEAEFEDTMPITDANRSKLVQFYVQELARDGN 335 (647)
T ss_pred ccCcCccccCcccCCCCcccceEEEeeCCHHHHHhhcccCHHHHhhcceEEEEcCCCCCChHHHHHHHHHHHHHHHhcCC
Confidence 2345677777643 2233333333 222 455432 44444444444332 33 3
Q ss_pred -CCCCHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHhC----CCCCHHHHHHhhCC
Q 019145 232 -LNLDAEALSTLSSIS----------QGDLRRAITYLQGAARLFG----SSITSKDLISVSGV 279 (345)
Q Consensus 232 -~~i~~~~~~~l~~~s----------~g~~r~~~~~l~~~~~~~~----~~it~~~v~~~~~~ 279 (345)
..++.+++..|++.. .-.+|.+.+.++.+...+. +-|+.+||.++...
T Consensus 336 ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~ 398 (647)
T COG1067 336 IPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNLVREAGDIAVSEGRKLITAEDVEEALQK 398 (647)
T ss_pred CCCCCHHHHHHHHHHHHHhccccceeccCHHHHHHHHHHhhHHHhcCCcccCcHHHHHHHHHh
Confidence 458999998887553 2368888888886665552 23999999988766
No 496
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.76 E-value=0.0026 Score=56.50 Aligned_cols=31 Identities=29% Similarity=0.425 Sum_probs=26.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeee
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 119 (345)
.+++|+|++|+|||++++.++..+ +.+++.+
T Consensus 134 ~~I~l~G~~GsGKStvg~~La~~L------g~~~id~ 164 (309)
T PRK08154 134 RRIALIGLRGAGKSTLGRMLAARL------GVPFVEL 164 (309)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHc------CCCEEeH
Confidence 348999999999999999999998 6666643
No 497
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.75 E-value=0.01 Score=64.93 Aligned_cols=121 Identities=13% Similarity=0.154 Sum_probs=66.1
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHH----HHHHhcCCCCCCCceeeeecCCccchHHHH------HHHH
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALA----IAHQLFGPELYKSRVLELNASDDRGINVVR------TKIK 135 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~----la~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 135 (345)
.+.....+...+.... ..+++.|++||||||+++. +...+.. .+..++.+.+.. .....+. ..+.
T Consensus 1021 t~~Q~~Ai~~il~~~~-~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~---~g~~v~glApT~-~Aa~~L~~~g~~a~Ti~ 1095 (1960)
T TIGR02760 1021 THGQKQAIHLIISTKD-RFVAVQGLAGVGKTTMLESRYKPVLQAFES---EQLQVIGLAPTH-EAVGELKSAGVQAQTLD 1095 (1960)
T ss_pred CHHHHHHHHHHHhCCC-cEEEEEeCCCCCHHHhHHHHHHHHHHHHHh---cCCeEEEEeChH-HHHHHHHhcCCchHhHH
Confidence 3444445555554432 3479999999999999954 4333211 133444443221 1111111 1111
Q ss_pred HHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCccc
Q 019145 136 TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (345)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~ 196 (345)
.+... ...........+..++||||+.+++......|++..+. ...++|++++...
T Consensus 1096 s~l~~---~~~~~~~~~~~~~~v~ivDEasMv~~~~~~~l~~~~~~--~~ak~vlvGD~~Q 1151 (1960)
T TIGR02760 1096 SFLTD---ISLYRNSGGDFRNTLFILDESSMVSNFQLTHATELVQK--SGSRAVSLGDIAQ 1151 (1960)
T ss_pred HHhcC---cccccccCCCCcccEEEEEccccccHHHHHHHHHhccC--CCCEEEEeCChhh
Confidence 11110 00000001133567999999999999999999888765 3467889886543
No 498
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.75 E-value=0.0062 Score=50.29 Aligned_cols=24 Identities=38% Similarity=0.390 Sum_probs=21.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~ 108 (345)
+-+.|++|+||||+++.+...+.+
T Consensus 11 IgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 11 IGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhCc
Confidence 578999999999999999999853
No 499
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=96.75 E-value=0.029 Score=44.38 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=19.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
+++.|++|+|||+++..+...
T Consensus 3 v~~vG~~~~GKTsl~~~~~~~ 23 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVKG 23 (162)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999864
No 500
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=96.75 E-value=0.0061 Score=55.48 Aligned_cols=55 Identities=24% Similarity=0.316 Sum_probs=35.8
Q ss_pred CCCeEEEEEcCCCCCCHHHHHHHHHHHhh-----cCCceEEEEecCcccccchhhhccce
Q 019145 153 CPPYKIIILDEADSMTEDAQNALRRTMET-----YSKVTRFFFICNYISRIIEPLASRCA 207 (345)
Q Consensus 153 ~~~~~iliiDE~~~l~~~~~~~l~~~le~-----~~~~~~ii~~~n~~~~l~~~l~~r~~ 207 (345)
..+.-|+|+||+|.+..+.-..|+.-++. ++..+-+.++|..+..+++.+.+.+.
T Consensus 253 dkPklVfFfDEAHLLF~da~kall~~ieqvvrLIRSKGVGv~fvTQ~P~DiP~~VL~QLG 312 (502)
T PF05872_consen 253 DKPKLVFFFDEAHLLFNDAPKALLDKIEQVVRLIRSKGVGVYFVTQNPTDIPDDVLGQLG 312 (502)
T ss_pred CCceEEEEEechhhhhcCCCHHHHHHHHHHHHHhhccCceEEEEeCCCCCCCHHHHHhhh
Confidence 33455788999999865443444433332 24567788888888888887776543
Done!