Query 019145
Match_columns 345
No_of_seqs 294 out of 3128
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 11:36:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019145.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019145hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sxj_C Activator 1 40 kDa subu 100.0 8.7E-38 3E-42 280.4 29.7 273 47-328 11-288 (340)
2 2chq_A Replication factor C sm 100.0 1.6E-37 5.3E-42 276.5 26.2 271 47-327 3-274 (319)
3 1sxj_D Activator 1 41 kDa subu 100.0 3.6E-37 1.2E-41 278.1 25.9 282 46-327 22-310 (353)
4 1iqp_A RFCS; clamp loader, ext 100.0 5.5E-37 1.9E-41 273.9 26.6 272 46-327 10-282 (327)
5 1jr3_A DNA polymerase III subu 100.0 8.5E-36 2.9E-40 271.1 34.5 274 47-330 2-294 (373)
6 3u61_B DNA polymerase accessor 100.0 5.4E-36 1.9E-40 267.1 28.1 264 46-332 11-284 (324)
7 1sxj_B Activator 1 37 kDa subu 100.0 9.7E-35 3.3E-39 258.8 28.5 271 46-328 6-277 (323)
8 3pvs_A Replication-associated 100.0 1.9E-34 6.4E-39 265.5 29.7 262 48-328 13-302 (447)
9 1sxj_E Activator 1 40 kDa subu 100.0 2.9E-34 1E-38 259.1 21.5 276 50-327 3-309 (354)
10 2chg_A Replication factor C sm 100.0 7.9E-30 2.7E-34 214.7 25.2 223 47-279 3-225 (226)
11 2gno_A DNA polymerase III, gam 100.0 8.9E-30 3E-34 223.1 19.0 241 65-326 1-253 (305)
12 1jr3_D DNA polymerase III, del 100.0 9.5E-30 3.2E-34 228.4 17.0 243 73-330 9-259 (343)
13 1njg_A DNA polymerase III subu 100.0 3.7E-28 1.3E-32 207.3 25.0 222 47-278 9-249 (250)
14 1sxj_A Activator 1 95 kDa subu 100.0 6.4E-28 2.2E-32 227.3 21.1 241 46-295 24-292 (516)
15 1a5t_A Delta prime, HOLB; zinc 99.9 2.3E-26 7.9E-31 205.2 19.2 183 64-261 5-209 (334)
16 3pfi_A Holliday junction ATP-d 99.9 1.2E-25 4.1E-30 201.4 22.4 209 47-277 15-251 (338)
17 3uk6_A RUVB-like 2; hexameric 99.9 2.2E-24 7.5E-29 195.4 23.8 224 46-279 28-329 (368)
18 1hqc_A RUVB; extended AAA-ATPa 99.9 2.6E-24 9E-29 191.5 23.7 206 51-277 2-235 (324)
19 1in4_A RUVB, holliday junction 99.9 6.7E-23 2.3E-27 182.8 26.2 214 43-278 7-248 (334)
20 3bos_A Putative DNA replicatio 99.9 1.1E-23 3.8E-28 179.3 17.1 211 47-278 13-241 (242)
21 2c9o_A RUVB-like 1; hexameric 99.9 1.2E-22 4.3E-27 188.4 22.4 123 157-280 297-437 (456)
22 3vfd_A Spastin; ATPase, microt 99.9 1.5E-21 5.1E-26 177.8 22.3 192 50-261 104-329 (389)
23 3b9p_A CG5977-PA, isoform A; A 99.9 4.1E-21 1.4E-25 168.7 23.2 212 50-281 10-273 (297)
24 2v1u_A Cell division control p 99.9 1.9E-21 6.5E-26 177.1 21.0 275 47-328 8-321 (387)
25 1fnn_A CDC6P, cell division co 99.9 5.8E-21 2E-25 174.1 23.8 229 46-279 5-273 (389)
26 4b4t_J 26S protease regulatory 99.9 6.3E-21 2.2E-25 170.3 21.8 200 57-278 144-387 (405)
27 2qp9_X Vacuolar protein sortin 99.9 8.9E-21 3E-25 170.2 20.2 192 50-261 40-265 (355)
28 3eie_A Vacuolar protein sortin 99.9 5.9E-21 2E-25 169.4 18.4 192 50-261 7-232 (322)
29 1lv7_A FTSH; alpha/beta domain 99.9 1.5E-20 5.2E-25 161.5 19.4 207 50-278 1-250 (257)
30 3d8b_A Fidgetin-like protein 1 99.9 1.8E-20 6E-25 168.6 19.9 191 51-261 74-299 (357)
31 4b4t_I 26S protease regulatory 99.9 3.9E-20 1.3E-24 165.7 20.8 203 53-277 174-420 (437)
32 2qby_B CDC6 homolog 3, cell di 99.9 4.9E-20 1.7E-24 167.7 21.6 231 46-280 8-270 (384)
33 3syl_A Protein CBBX; photosynt 99.9 2E-20 6.7E-25 165.3 18.3 184 62-262 32-260 (309)
34 4b4t_M 26S protease regulatory 99.9 2.8E-20 9.6E-25 168.7 19.6 203 55-279 175-421 (434)
35 2z4s_A Chromosomal replication 99.9 8.8E-21 3E-25 174.8 16.5 213 55-281 98-333 (440)
36 1ofh_A ATP-dependent HSL prote 99.9 4E-20 1.4E-24 163.3 19.8 204 62-280 16-299 (310)
37 4b4t_H 26S protease regulatory 99.9 7E-20 2.4E-24 165.6 21.0 198 58-277 206-447 (467)
38 4b4t_L 26S protease subunit RP 99.8 1.4E-19 4.7E-24 164.3 22.6 200 57-277 177-419 (437)
39 2qz4_A Paraplegin; AAA+, SPG7, 99.8 1.3E-19 4.4E-24 156.2 21.3 201 57-277 2-246 (262)
40 1xwi_A SKD1 protein; VPS4B, AA 99.8 1.9E-19 6.5E-24 159.4 22.3 189 54-261 5-227 (322)
41 3h4m_A Proteasome-activating n 99.8 1.2E-19 4.1E-24 158.4 20.2 204 54-278 10-256 (285)
42 2r44_A Uncharacterized protein 99.8 3.6E-20 1.2E-24 165.2 17.1 216 49-278 15-295 (331)
43 3te6_A Regulatory protein SIR3 99.8 5E-20 1.7E-24 160.9 17.3 200 63-264 22-286 (318)
44 2zan_A Vacuolar protein sortin 99.8 1.6E-19 5.3E-24 166.8 20.1 192 51-261 124-349 (444)
45 1l8q_A Chromosomal replication 99.8 1.7E-19 5.9E-24 160.3 18.2 201 58-277 8-237 (324)
46 2qby_A CDC6 homolog 1, cell di 99.8 2.1E-19 7.3E-24 163.4 19.2 222 47-280 9-272 (386)
47 4b4t_K 26S protease regulatory 99.8 5.6E-19 1.9E-23 160.1 21.0 198 58-277 169-411 (428)
48 1g8p_A Magnesium-chelatase 38 99.8 1.5E-19 5.2E-24 162.4 15.7 224 52-278 15-320 (350)
49 3pxg_A Negative regulator of g 99.8 1.5E-19 5.1E-24 168.0 15.6 198 46-263 165-384 (468)
50 2bjv_A PSP operon transcriptio 99.8 1.8E-19 6E-24 155.6 14.7 212 58-273 3-250 (265)
51 2ce7_A Cell division protein F 99.8 1.1E-18 3.7E-23 160.9 20.8 202 55-278 10-254 (476)
52 4fcw_A Chaperone protein CLPB; 99.8 4.9E-19 1.7E-23 156.5 15.0 195 61-262 17-276 (311)
53 3cf0_A Transitional endoplasmi 99.8 2.3E-18 7.8E-23 151.2 17.7 187 54-261 8-233 (301)
54 1ojl_A Transcriptional regulat 99.8 8E-18 2.7E-22 147.7 19.3 206 62-276 3-248 (304)
55 3m6a_A ATP-dependent protease 99.8 2E-19 6.7E-24 169.9 8.9 215 61-281 81-342 (543)
56 2r62_A Cell division protease 99.8 7.4E-20 2.5E-24 158.3 4.4 206 54-280 4-253 (268)
57 1jbk_A CLPB protein; beta barr 99.8 2.4E-18 8.3E-23 140.8 11.6 165 48-223 9-194 (195)
58 1qvr_A CLPB protein; coiled co 99.8 8.7E-18 3E-22 167.3 16.8 205 49-264 158-392 (854)
59 1r6b_X CLPA protein; AAA+, N-t 99.8 1.6E-17 5.6E-22 163.8 18.5 220 46-277 171-430 (758)
60 3hu3_A Transitional endoplasmi 99.8 4.8E-17 1.6E-21 151.1 19.5 190 53-263 196-421 (489)
61 1ixz_A ATP-dependent metallopr 99.7 1E-16 3.5E-21 137.3 18.8 207 53-277 8-253 (254)
62 1d2n_A N-ethylmaleimide-sensit 99.7 1.9E-17 6.6E-22 143.4 14.3 178 61-263 33-248 (272)
63 2dhr_A FTSH; AAA+ protein, hex 99.7 4.1E-17 1.4E-21 151.2 16.8 204 56-277 26-268 (499)
64 3pxi_A Negative regulator of g 99.7 4.3E-17 1.5E-21 160.6 17.5 197 47-263 166-384 (758)
65 1um8_A ATP-dependent CLP prote 99.7 3.1E-17 1.1E-21 148.7 15.0 205 62-278 22-363 (376)
66 3pxi_A Negative regulator of g 99.7 4.7E-17 1.6E-21 160.3 16.5 185 61-261 491-721 (758)
67 1r6b_X CLPA protein; AAA+, N-t 99.7 6.7E-17 2.3E-21 159.4 16.9 182 61-261 458-712 (758)
68 2p65_A Hypothetical protein PF 99.7 2.1E-17 7.2E-22 134.5 11.0 158 47-215 8-187 (187)
69 1iy2_A ATP-dependent metallopr 99.7 5.5E-16 1.9E-20 134.6 19.4 204 56-277 35-277 (278)
70 1qvr_A CLPB protein; coiled co 99.7 5.8E-17 2E-21 161.4 11.3 199 61-262 558-817 (854)
71 3k1j_A LON protease, ATP-depen 99.7 4.3E-16 1.5E-20 149.4 14.6 222 52-278 32-373 (604)
72 1w5s_A Origin recognition comp 99.7 3.8E-15 1.3E-19 136.6 19.7 228 47-277 11-290 (412)
73 3nbx_X ATPase RAVA; AAA+ ATPas 99.7 5.5E-15 1.9E-19 137.2 20.1 207 61-274 22-280 (500)
74 3hws_A ATP-dependent CLP prote 99.7 3.8E-16 1.3E-20 140.9 12.0 205 62-278 16-347 (363)
75 3cf2_A TER ATPase, transitiona 99.7 5.3E-16 1.8E-20 150.5 13.7 173 56-249 199-406 (806)
76 2x8a_A Nuclear valosin-contain 99.6 2.6E-14 9E-19 123.3 20.5 208 57-280 6-264 (274)
77 3cf2_A TER ATPase, transitiona 99.6 2.4E-16 8.3E-21 152.9 7.6 182 58-260 474-697 (806)
78 3n70_A Transport activator; si 99.6 3.3E-15 1.1E-19 116.5 11.0 132 62-214 2-144 (145)
79 3t15_A Ribulose bisphosphate c 99.6 4E-14 1.4E-18 123.5 18.5 149 84-251 38-221 (293)
80 1g41_A Heat shock protein HSLU 99.6 8.5E-14 2.9E-18 126.5 19.5 128 155-282 250-435 (444)
81 3co5_A Putative two-component 99.6 6.4E-15 2.2E-19 114.5 8.7 128 62-214 5-142 (143)
82 3f9v_A Minichromosome maintena 99.6 1.2E-15 4.1E-20 145.3 4.6 207 59-278 293-585 (595)
83 1ny5_A Transcriptional regulat 99.5 2.4E-13 8.2E-18 123.2 15.2 212 60-275 136-382 (387)
84 3dzd_A Transcriptional regulat 99.5 3E-13 1E-17 121.6 13.8 200 61-265 129-362 (368)
85 2qen_A Walker-type ATPase; unk 99.5 2.9E-12 1E-16 114.5 19.9 190 59-259 10-248 (350)
86 1ypw_A Transitional endoplasmi 99.5 4.1E-13 1.4E-17 132.3 14.4 182 54-256 197-413 (806)
87 1ypw_A Transitional endoplasmi 99.4 6.7E-15 2.3E-19 145.0 -2.5 154 56-229 472-663 (806)
88 3ec2_A DNA replication protein 99.4 4.2E-13 1.4E-17 108.5 7.6 133 53-196 2-144 (180)
89 2fna_A Conserved hypothetical 99.3 2.1E-11 7.2E-16 109.2 15.9 189 59-260 11-253 (357)
90 3f8t_A Predicted ATPase involv 99.2 6.1E-11 2.1E-15 107.2 11.9 203 63-278 215-481 (506)
91 3upu_A ATP-dependent DNA helic 99.2 1.1E-10 3.9E-15 108.2 12.6 144 46-196 9-166 (459)
92 2qgz_A Helicase loader, putati 99.2 1.2E-11 4.1E-16 108.4 5.6 133 51-195 114-258 (308)
93 2w58_A DNAI, primosome compone 99.2 3.1E-11 1.1E-15 99.3 7.7 124 51-195 15-159 (202)
94 2kjq_A DNAA-related protein; s 99.2 2.5E-11 8.7E-16 94.6 6.3 112 66-207 24-140 (149)
95 1u0j_A DNA replication protein 99.2 1.8E-10 6.1E-15 97.3 10.9 135 70-235 90-258 (267)
96 4akg_A Glutathione S-transfera 99.1 3E-10 1E-14 122.6 12.0 151 72-229 1259-1433(2695)
97 1tue_A Replication protein E1; 99.1 3.7E-10 1.3E-14 91.0 9.1 119 67-213 42-178 (212)
98 4akg_A Glutathione S-transfera 98.9 1.9E-07 6.6E-12 101.2 22.3 169 67-261 632-837 (2695)
99 3vkg_A Dynein heavy chain, cyt 98.8 1.4E-08 4.9E-13 110.5 12.8 184 72-263 1296-1526(3245)
100 1z6t_A APAF-1, apoptotic prote 98.8 6.6E-08 2.3E-12 92.6 15.3 189 55-258 118-329 (591)
101 2a5y_B CED-4; apoptosis; HET: 98.6 4E-07 1.4E-11 86.2 14.1 180 64-254 131-334 (549)
102 1ye8_A Protein THEP1, hypothet 98.6 4.3E-07 1.5E-11 72.7 11.0 69 155-225 99-174 (178)
103 3sfz_A APAF-1, apoptotic pepti 98.6 3.9E-06 1.3E-10 87.1 20.1 192 55-259 118-330 (1249)
104 3vkg_A Dynein heavy chain, cyt 98.5 1.3E-05 4.6E-10 87.9 22.8 171 67-263 591-799 (3245)
105 2r2a_A Uncharacterized protein 98.5 2.1E-07 7.1E-12 75.8 7.0 59 156-214 88-153 (199)
106 3e1s_A Exodeoxyribonuclease V, 98.4 7.3E-07 2.5E-11 84.5 9.1 120 66-196 191-317 (574)
107 2orw_A Thymidine kinase; TMTK, 98.3 1.7E-07 5.7E-12 75.5 2.2 50 155-207 76-131 (184)
108 1vt4_I APAF-1 related killer D 98.3 1.3E-05 4.5E-10 79.6 15.7 153 63-227 130-311 (1221)
109 1g5t_A COB(I)alamin adenosyltr 98.2 2.4E-06 8.1E-11 68.6 5.6 109 82-207 28-172 (196)
110 1w36_D RECD, exodeoxyribonucle 98.2 8.7E-06 3E-10 77.9 10.5 110 83-196 165-300 (608)
111 2b8t_A Thymidine kinase; deoxy 98.1 1.5E-05 5.1E-10 65.8 9.3 93 85-193 15-124 (223)
112 2vhj_A Ntpase P4, P4; non- hyd 98.1 1.4E-05 4.7E-10 69.3 8.8 21 85-105 126-146 (331)
113 2r8r_A Sensor protein; KDPD, P 97.9 0.00016 5.5E-09 59.3 11.9 133 84-223 8-173 (228)
114 2fz4_A DNA repair protein RAD2 97.8 7.6E-05 2.6E-09 62.5 9.1 38 66-106 95-132 (237)
115 1ly1_A Polynucleotide kinase; 97.8 0.00029 1E-08 55.9 12.0 21 84-104 4-24 (181)
116 3dl0_A Adenylate kinase; phosp 97.7 0.0011 3.6E-08 54.4 14.8 23 84-106 2-24 (216)
117 2j9r_A Thymidine kinase; TK1, 97.7 3.6E-05 1.2E-09 62.6 5.6 102 85-192 31-135 (214)
118 1w4r_A Thymidine kinase; type 97.7 3.5E-05 1.2E-09 61.7 5.3 99 85-192 23-124 (195)
119 3cmu_A Protein RECA, recombina 97.7 6.6E-05 2.2E-09 79.5 8.4 27 81-107 1426-1452(2050)
120 3a4m_A L-seryl-tRNA(SEC) kinas 97.7 0.00085 2.9E-08 56.9 13.6 24 83-106 5-28 (260)
121 2i3b_A HCR-ntpase, human cance 97.6 0.00035 1.2E-08 56.2 10.0 72 153-226 103-183 (189)
122 3fb4_A Adenylate kinase; psych 97.6 0.0013 4.3E-08 53.9 13.4 23 84-106 2-24 (216)
123 3tlx_A Adenylate kinase 2; str 97.6 0.0024 8.1E-08 53.5 15.2 24 83-106 30-53 (243)
124 3lw7_A Adenylate kinase relate 97.6 0.00039 1.3E-08 54.7 9.9 22 84-106 3-24 (179)
125 2iut_A DNA translocase FTSK; n 97.5 0.0047 1.6E-07 57.8 17.4 70 155-224 343-420 (574)
126 3trf_A Shikimate kinase, SK; a 97.5 7.2E-05 2.5E-09 59.9 4.3 25 82-106 5-29 (185)
127 1xx6_A Thymidine kinase; NESG, 97.5 0.00029 1E-08 56.6 7.6 35 155-192 81-115 (191)
128 1svm_A Large T antigen; AAA+ f 97.5 0.00019 6.5E-09 64.1 7.0 24 83-106 170-193 (377)
129 1qhx_A CPT, protein (chloramph 97.5 0.00012 4E-09 58.2 4.9 23 84-106 5-27 (178)
130 2orv_A Thymidine kinase; TP4A 97.4 0.00024 8.1E-09 58.4 6.5 99 85-192 22-123 (234)
131 1t6n_A Probable ATP-dependent 97.4 0.0025 8.7E-08 52.2 12.9 42 153-194 156-199 (220)
132 3vaa_A Shikimate kinase, SK; s 97.4 0.00014 4.9E-09 59.0 4.5 25 82-106 25-49 (199)
133 3llm_A ATP-dependent RNA helic 97.4 0.0013 4.5E-08 54.7 10.4 22 83-104 77-98 (235)
134 3kb2_A SPBC2 prophage-derived 97.4 0.00016 5.3E-09 57.0 4.4 23 84-106 3-25 (173)
135 3iij_A Coilin-interacting nucl 97.4 0.00015 5.1E-09 57.8 4.3 25 82-106 11-35 (180)
136 1zuh_A Shikimate kinase; alpha 97.3 0.00015 5.2E-09 57.0 4.2 25 82-106 7-31 (168)
137 3dm5_A SRP54, signal recogniti 97.3 0.0026 9E-08 57.8 12.6 25 84-108 102-126 (443)
138 1jql_B DNA polymerase III, del 97.3 0.00099 3.4E-08 50.6 8.3 122 75-211 11-139 (140)
139 1via_A Shikimate kinase; struc 97.3 0.00017 6E-09 57.1 4.1 23 84-106 6-28 (175)
140 3kl4_A SRP54, signal recogniti 97.3 0.001 3.4E-08 60.4 9.4 23 85-107 100-122 (433)
141 2iyv_A Shikimate kinase, SK; t 97.3 0.0002 6.7E-09 57.2 4.3 24 83-106 3-26 (184)
142 3ctd_A Putative ATPase, AAA fa 97.3 0.00053 1.8E-08 54.6 6.5 51 278-328 32-82 (213)
143 3zvl_A Bifunctional polynucleo 97.3 0.00082 2.8E-08 61.1 8.6 23 84-106 260-282 (416)
144 1y63_A LMAJ004144AAA protein; 97.3 0.00018 6.3E-09 57.5 3.8 24 82-105 10-33 (184)
145 3jvv_A Twitching mobility prot 97.3 0.0023 7.9E-08 56.7 11.2 24 84-107 125-148 (356)
146 1kag_A SKI, shikimate kinase I 97.2 0.00033 1.1E-08 55.3 4.7 24 83-106 5-28 (173)
147 2ze6_A Isopentenyl transferase 97.2 0.0003 1E-08 59.4 4.7 23 84-106 3-25 (253)
148 2ga8_A Hypothetical 39.9 kDa p 97.2 0.00028 9.5E-09 62.0 4.4 37 70-106 12-48 (359)
149 3cmu_A Protein RECA, recombina 97.2 0.00077 2.6E-08 71.6 8.2 25 83-107 1082-1106(2050)
150 1ltq_A Polynucleotide kinase; 97.2 0.0055 1.9E-07 52.9 12.4 23 84-106 4-26 (301)
151 3b6e_A Interferon-induced heli 97.1 0.00086 2.9E-08 54.7 6.8 38 66-106 35-72 (216)
152 1gvn_B Zeta; postsegregational 97.1 0.00085 2.9E-08 57.7 7.0 22 85-106 36-57 (287)
153 2rhm_A Putative kinase; P-loop 97.1 0.00027 9.3E-09 56.8 3.6 23 84-106 7-29 (193)
154 1vec_A ATP-dependent RNA helic 97.1 0.0036 1.2E-07 50.7 10.3 19 83-101 41-59 (206)
155 3e2i_A Thymidine kinase; Zn-bi 97.1 0.00037 1.3E-08 56.6 4.2 36 154-192 100-135 (219)
156 3h1t_A Type I site-specific re 97.1 0.0025 8.7E-08 60.7 10.8 41 66-107 183-223 (590)
157 3cmw_A Protein RECA, recombina 97.1 0.00097 3.3E-08 70.0 8.3 22 85-106 1085-1106(1706)
158 3fmo_B ATP-dependent RNA helic 97.1 0.0062 2.1E-07 52.7 12.3 50 57-106 91-156 (300)
159 3hr8_A Protein RECA; alpha and 97.1 0.0029 9.9E-08 55.9 10.2 22 85-106 64-85 (356)
160 1qde_A EIF4A, translation init 97.1 0.0017 5.7E-08 53.5 8.2 24 83-106 52-76 (224)
161 1aky_A Adenylate kinase; ATP:A 97.1 0.00039 1.3E-08 57.3 4.3 24 83-106 5-28 (220)
162 1e6c_A Shikimate kinase; phosp 97.1 0.00035 1.2E-08 55.1 3.8 23 84-106 4-26 (173)
163 3t61_A Gluconokinase; PSI-biol 97.1 0.00042 1.4E-08 56.2 4.4 24 83-106 19-42 (202)
164 4eun_A Thermoresistant glucoki 97.1 0.00039 1.3E-08 56.4 4.1 26 81-106 28-53 (200)
165 2c95_A Adenylate kinase 1; tra 97.1 0.00038 1.3E-08 56.0 4.0 25 82-106 9-33 (196)
166 3vkw_A Replicase large subunit 97.1 0.001 3.4E-08 60.3 7.0 98 85-195 164-270 (446)
167 2cdn_A Adenylate kinase; phosp 97.1 0.0005 1.7E-08 55.7 4.6 23 84-106 22-44 (201)
168 2px0_A Flagellar biosynthesis 97.0 0.0065 2.2E-07 52.4 11.7 24 84-107 107-130 (296)
169 2pt5_A Shikimate kinase, SK; a 97.0 0.00048 1.7E-08 54.0 4.1 23 84-106 2-24 (168)
170 1nrj_B SR-beta, signal recogni 97.0 0.0028 9.4E-08 51.8 8.8 27 81-107 11-37 (218)
171 3cm0_A Adenylate kinase; ATP-b 97.0 0.00052 1.8E-08 54.8 4.2 23 84-106 6-28 (186)
172 2p5t_B PEZT; postsegregational 97.0 0.00098 3.3E-08 56.2 6.0 22 85-106 35-56 (253)
173 1kht_A Adenylate kinase; phosp 97.0 0.00043 1.5E-08 55.4 3.6 23 84-106 5-27 (192)
174 1tev_A UMP-CMP kinase; ploop, 97.0 0.00049 1.7E-08 55.3 3.8 23 84-106 5-27 (196)
175 3pey_A ATP-dependent RNA helic 97.0 0.0032 1.1E-07 56.3 9.7 27 79-105 41-67 (395)
176 1ak2_A Adenylate kinase isoenz 97.0 0.0006 2E-08 56.8 4.4 24 83-106 17-40 (233)
177 1nks_A Adenylate kinase; therm 97.0 0.0004 1.4E-08 55.7 3.3 24 84-107 3-26 (194)
178 3uie_A Adenylyl-sulfate kinase 96.9 0.00068 2.3E-08 54.9 4.4 27 81-107 24-50 (200)
179 1rif_A DAR protein, DNA helica 96.9 0.0045 1.6E-07 52.9 9.9 39 65-106 114-152 (282)
180 4b3f_X DNA-binding protein smu 96.9 0.0012 4E-08 63.7 6.7 41 65-107 190-230 (646)
181 2bwj_A Adenylate kinase 5; pho 96.9 0.00053 1.8E-08 55.3 3.7 24 83-106 13-36 (199)
182 1zak_A Adenylate kinase; ATP:A 96.9 0.00048 1.6E-08 56.8 3.4 25 82-106 5-29 (222)
183 1xp8_A RECA protein, recombina 96.9 0.0057 1.9E-07 54.4 10.5 22 85-106 77-98 (366)
184 3umf_A Adenylate kinase; rossm 96.9 0.00069 2.4E-08 55.6 4.3 23 84-106 31-53 (217)
185 1u94_A RECA protein, recombina 96.9 0.0062 2.1E-07 53.9 10.6 24 84-107 65-88 (356)
186 1zd8_A GTP:AMP phosphotransfer 96.9 0.00053 1.8E-08 56.8 3.5 24 83-106 8-31 (227)
187 3sr0_A Adenylate kinase; phosp 96.9 0.00074 2.5E-08 55.0 4.3 22 85-106 3-24 (206)
188 2zr9_A Protein RECA, recombina 96.9 0.0051 1.7E-07 54.4 10.0 22 85-106 64-85 (349)
189 2vli_A Antibiotic resistance p 96.9 0.0005 1.7E-08 54.7 3.2 24 83-106 6-29 (183)
190 1zp6_A Hypothetical protein AT 96.9 0.00052 1.8E-08 55.0 3.3 23 84-106 11-33 (191)
191 2gxq_A Heat resistant RNA depe 96.9 0.0052 1.8E-07 49.7 9.4 24 83-106 39-63 (207)
192 1ukz_A Uridylate kinase; trans 96.9 0.00058 2E-08 55.4 3.6 23 84-106 17-39 (203)
193 1qf9_A UMP/CMP kinase, protein 96.9 0.0006 2E-08 54.6 3.4 23 84-106 8-30 (194)
194 3be4_A Adenylate kinase; malar 96.9 0.00061 2.1E-08 56.0 3.5 24 83-106 6-29 (217)
195 1knq_A Gluconate kinase; ALFA/ 96.9 0.00085 2.9E-08 53.0 4.2 23 84-106 10-32 (175)
196 2qor_A Guanylate kinase; phosp 96.9 0.00075 2.6E-08 54.9 3.9 24 83-106 13-36 (204)
197 3sop_A Neuronal-specific septi 96.8 0.042 1.4E-06 46.6 14.9 23 84-106 4-26 (270)
198 3bge_A Predicted ATPase; struc 96.8 0.0015 5.2E-08 51.5 5.4 50 279-328 5-54 (201)
199 3crm_A TRNA delta(2)-isopenten 96.8 0.0008 2.7E-08 58.5 4.1 23 84-106 7-29 (323)
200 3bor_A Human initiation factor 96.8 0.0026 8.8E-08 52.9 7.0 21 83-103 68-88 (237)
201 2ius_A DNA translocase FTSK; n 96.8 0.014 4.7E-07 54.1 12.3 71 155-225 297-375 (512)
202 1hv8_A Putative ATP-dependent 96.8 0.0056 1.9E-07 54.1 9.5 24 83-106 45-68 (367)
203 2jaq_A Deoxyguanosine kinase; 96.8 0.001 3.4E-08 53.9 4.2 23 84-106 2-24 (205)
204 1e4v_A Adenylate kinase; trans 96.8 0.00079 2.7E-08 55.2 3.6 23 84-106 2-24 (214)
205 2plr_A DTMP kinase, probable t 96.8 0.0008 2.7E-08 54.8 3.6 24 84-107 6-29 (213)
206 3nwj_A ATSK2; P loop, shikimat 96.8 0.0011 3.9E-08 55.6 4.4 39 68-106 33-72 (250)
207 1rz3_A Hypothetical protein rb 96.8 0.002 6.7E-08 52.2 5.7 40 67-106 4-46 (201)
208 1ex7_A Guanylate kinase; subst 96.7 0.00096 3.3E-08 53.3 3.7 23 84-106 3-25 (186)
209 3fht_A ATP-dependent RNA helic 96.7 0.0088 3E-07 53.9 10.5 22 80-101 62-83 (412)
210 3ber_A Probable ATP-dependent 96.7 0.0044 1.5E-07 52.0 7.9 18 83-100 81-98 (249)
211 1kgd_A CASK, peripheral plasma 96.7 0.0011 3.6E-08 52.8 3.8 23 84-106 7-29 (180)
212 2xb4_A Adenylate kinase; ATP-b 96.7 0.0013 4.4E-08 54.3 4.4 23 84-106 2-24 (223)
213 2yvu_A Probable adenylyl-sulfa 96.7 0.00073 2.5E-08 54.0 2.8 24 84-107 15-38 (186)
214 3fmp_B ATP-dependent RNA helic 96.7 0.0099 3.4E-07 55.0 10.8 22 80-101 129-150 (479)
215 3c8u_A Fructokinase; YP_612366 96.7 0.0016 5.4E-08 53.1 4.9 40 68-107 6-47 (208)
216 3tau_A Guanylate kinase, GMP k 96.7 0.001 3.5E-08 54.3 3.7 24 83-106 9-32 (208)
217 1cke_A CK, MSSA, protein (cyti 96.7 0.0014 4.6E-08 54.1 4.3 23 84-106 7-29 (227)
218 1s2m_A Putative ATP-dependent 96.7 0.016 5.4E-07 52.0 11.6 24 83-106 59-82 (400)
219 3fho_A ATP-dependent RNA helic 96.7 0.004 1.4E-07 58.1 7.8 25 82-106 158-183 (508)
220 2pt7_A CAG-ALFA; ATPase, prote 96.6 0.013 4.3E-07 51.4 10.4 36 69-106 160-195 (330)
221 2wwf_A Thymidilate kinase, put 96.6 0.0011 3.9E-08 53.9 3.6 24 84-107 12-35 (212)
222 3dkp_A Probable ATP-dependent 96.6 0.026 9E-07 46.9 12.1 24 83-106 67-91 (245)
223 3iuy_A Probable ATP-dependent 96.6 0.009 3.1E-07 49.2 9.0 40 153-192 165-205 (228)
224 1kao_A RAP2A; GTP-binding prot 96.6 0.043 1.5E-06 42.0 12.6 23 84-106 5-27 (167)
225 2pbr_A DTMP kinase, thymidylat 96.6 0.0012 4.2E-08 52.9 3.6 22 85-106 3-24 (195)
226 2z0h_A DTMP kinase, thymidylat 96.6 0.0012 4.1E-08 53.1 3.5 22 85-106 3-24 (197)
227 1nn5_A Similar to deoxythymidy 96.6 0.0013 4.4E-08 53.7 3.8 24 83-106 10-33 (215)
228 1q0u_A Bstdead; DEAD protein, 96.6 0.0056 1.9E-07 50.1 7.5 21 83-103 42-62 (219)
229 3a8t_A Adenylate isopentenyltr 96.6 0.001 3.5E-08 58.0 3.1 23 84-106 42-64 (339)
230 1xti_A Probable ATP-dependent 96.6 0.015 5E-07 52.0 10.9 40 153-192 150-191 (391)
231 2v3c_C SRP54, signal recogniti 96.6 0.0037 1.3E-07 56.9 6.9 23 84-106 101-123 (432)
232 2v54_A DTMP kinase, thymidylat 96.6 0.0014 4.6E-08 53.1 3.7 24 83-106 5-28 (204)
233 2bbw_A Adenylate kinase 4, AK4 96.6 0.0014 4.9E-08 54.9 3.9 24 83-106 28-51 (246)
234 3lxw_A GTPase IMAP family memb 96.6 0.1 3.4E-06 43.5 15.3 22 84-105 23-44 (247)
235 4dkx_A RAS-related protein RAB 96.6 0.0044 1.5E-07 50.8 6.7 22 85-106 16-37 (216)
236 2wsm_A Hydrogenase expression/ 96.6 0.0015 5.2E-08 53.6 3.9 44 63-106 11-54 (221)
237 2if2_A Dephospho-COA kinase; a 96.6 0.0012 4.2E-08 53.5 3.2 22 84-106 3-24 (204)
238 4gp7_A Metallophosphoesterase; 96.6 0.055 1.9E-06 42.3 12.8 18 84-101 11-28 (171)
239 1m7g_A Adenylylsulfate kinase; 96.6 0.0024 8.1E-08 52.2 4.9 27 80-106 23-49 (211)
240 2oxc_A Probable ATP-dependent 96.6 0.0097 3.3E-07 49.1 8.7 24 83-106 62-86 (230)
241 2xau_A PRE-mRNA-splicing facto 96.5 0.0089 3.1E-07 58.7 9.7 32 72-105 101-132 (773)
242 3llu_A RAS-related GTP-binding 96.5 0.023 7.8E-07 45.4 10.6 22 84-105 22-43 (196)
243 2bdt_A BH3686; alpha-beta prot 96.5 0.0014 4.8E-08 52.4 3.3 23 84-106 4-26 (189)
244 2j41_A Guanylate kinase; GMP, 96.5 0.0015 5.3E-08 52.9 3.6 24 83-106 7-30 (207)
245 3ly5_A ATP-dependent RNA helic 96.5 0.0037 1.3E-07 52.9 6.1 19 83-101 92-110 (262)
246 2grj_A Dephospho-COA kinase; T 96.5 0.0017 6E-08 52.1 3.8 22 85-106 15-36 (192)
247 3r20_A Cytidylate kinase; stru 96.5 0.0021 7.2E-08 53.3 4.3 23 84-106 11-33 (233)
248 3tr0_A Guanylate kinase, GMP k 96.5 0.0019 6.5E-08 52.3 4.0 23 84-106 9-31 (205)
249 2r9g_A AAA ATPase, central reg 96.5 0.0054 1.8E-07 48.5 6.3 51 277-328 10-60 (204)
250 3eiq_A Eukaryotic initiation f 96.5 0.011 3.7E-07 53.3 9.4 40 154-193 182-222 (414)
251 3cmw_A Protein RECA, recombina 96.5 0.0073 2.5E-07 63.6 9.0 23 84-106 36-58 (1706)
252 3ney_A 55 kDa erythrocyte memb 96.5 0.0022 7.4E-08 51.7 4.1 24 83-106 20-43 (197)
253 3a00_A Guanylate kinase, GMP k 96.5 0.0019 6.4E-08 51.6 3.6 23 84-106 3-25 (186)
254 3foz_A TRNA delta(2)-isopenten 96.4 0.0021 7.1E-08 55.4 4.0 23 84-106 12-34 (316)
255 1p9r_A General secretion pathw 96.4 0.0044 1.5E-07 56.1 6.2 49 58-107 144-192 (418)
256 1z0j_A RAB-22, RAS-related pro 96.4 0.0088 3E-07 46.3 7.3 23 84-106 8-30 (170)
257 3ake_A Cytidylate kinase; CMP 96.4 0.0029 9.8E-08 51.3 4.4 23 84-106 4-26 (208)
258 1lvg_A Guanylate kinase, GMP k 96.4 0.0023 7.8E-08 51.7 3.8 23 84-106 6-28 (198)
259 3exa_A TRNA delta(2)-isopenten 96.4 0.0021 7.2E-08 55.4 3.7 23 84-106 5-27 (322)
260 1jjv_A Dephospho-COA kinase; P 96.4 0.0019 6.4E-08 52.5 3.2 21 84-104 4-24 (206)
261 1odf_A YGR205W, hypothetical 3 96.4 0.0049 1.7E-07 53.0 6.0 23 85-107 34-56 (290)
262 2cvh_A DNA repair and recombin 96.4 0.0092 3.2E-07 48.7 7.5 33 85-123 23-55 (220)
263 2j0s_A ATP-dependent RNA helic 96.4 0.017 6E-07 52.0 10.0 39 154-192 178-217 (410)
264 4gzl_A RAS-related C3 botulinu 96.4 0.00055 1.9E-08 55.6 -0.1 42 65-106 13-54 (204)
265 2oca_A DAR protein, ATP-depend 96.4 0.029 9.9E-07 52.2 11.7 38 66-106 115-152 (510)
266 2pez_A Bifunctional 3'-phospho 96.4 0.0023 7.8E-08 50.7 3.6 23 84-106 7-29 (179)
267 2fwr_A DNA repair protein RAD2 96.3 0.019 6.4E-07 52.9 10.1 39 65-106 94-132 (472)
268 3d3q_A TRNA delta(2)-isopenten 96.3 0.0026 8.8E-08 55.7 4.0 23 84-106 9-31 (340)
269 3b85_A Phosphate starvation-in 96.3 0.0015 5E-08 53.3 2.3 43 53-105 3-45 (208)
270 2hf9_A Probable hydrogenase ni 96.3 0.0039 1.3E-07 51.3 4.9 42 66-107 22-63 (226)
271 4e22_A Cytidylate kinase; P-lo 96.3 0.0036 1.2E-07 52.6 4.8 24 83-106 28-51 (252)
272 3fe2_A Probable ATP-dependent 96.3 0.017 6E-07 48.0 8.9 40 153-192 174-214 (242)
273 3io5_A Recombination and repai 96.3 0.017 5.7E-07 49.9 8.7 22 85-106 31-52 (333)
274 2eyq_A TRCF, transcription-rep 96.3 0.034 1.2E-06 57.1 12.4 40 64-103 606-645 (1151)
275 2pl3_A Probable ATP-dependent 96.3 0.016 5.4E-07 48.0 8.5 18 83-100 63-80 (236)
276 1fuu_A Yeast initiation factor 96.3 0.0096 3.3E-07 53.2 7.5 40 154-193 161-201 (394)
277 1n0w_A DNA repair protein RAD5 96.2 0.0088 3E-07 49.6 6.7 40 84-123 26-68 (243)
278 1wms_A RAB-9, RAB9, RAS-relate 96.2 0.013 4.5E-07 45.7 7.4 23 84-106 9-31 (177)
279 2j37_W Signal recognition part 96.2 0.054 1.9E-06 50.1 12.4 24 84-107 103-126 (504)
280 1v5w_A DMC1, meiotic recombina 96.2 0.014 4.9E-07 51.4 8.1 40 85-124 125-167 (343)
281 1u8z_A RAS-related protein RAL 96.2 0.018 6E-07 44.4 7.8 23 84-106 6-28 (168)
282 2qag_C Septin-7; cell cycle, c 96.2 0.043 1.5E-06 49.6 11.2 22 85-106 34-55 (418)
283 3th5_A RAS-related C3 botulinu 95.2 0.00084 2.9E-08 54.4 0.0 32 74-105 22-53 (204)
284 2fh5_B SR-beta, signal recogni 96.1 0.025 8.4E-07 45.9 8.8 24 83-106 8-31 (214)
285 2gk6_A Regulator of nonsense t 96.1 0.0099 3.4E-07 57.0 7.3 39 66-107 182-220 (624)
286 3tw8_B RAS-related protein RAB 96.1 0.0056 1.9E-07 48.0 4.7 22 84-105 11-32 (181)
287 1z2a_A RAS-related protein RAB 96.1 0.0097 3.3E-07 46.0 6.0 23 84-106 7-29 (168)
288 3bc1_A RAS-related protein RAB 96.1 0.021 7.3E-07 45.1 8.2 23 84-106 13-35 (195)
289 1vht_A Dephospho-COA kinase; s 96.1 0.0037 1.3E-07 51.2 3.6 22 84-106 6-27 (218)
290 1s96_A Guanylate kinase, GMP k 96.1 0.0043 1.5E-07 51.0 3.9 23 84-106 18-40 (219)
291 3clv_A RAB5 protein, putative; 96.1 0.015 5E-07 46.5 7.2 23 84-106 9-31 (208)
292 1z0f_A RAB14, member RAS oncog 96.1 0.021 7.3E-07 44.5 7.9 23 84-106 17-39 (179)
293 3dz8_A RAS-related protein RAB 96.1 0.018 6.1E-07 45.8 7.5 23 84-106 25-47 (191)
294 1z6g_A Guanylate kinase; struc 96.1 0.0041 1.4E-07 51.0 3.8 23 84-106 25-47 (218)
295 1ek0_A Protein (GTP-binding pr 96.1 0.022 7.4E-07 44.0 7.9 23 84-106 5-27 (170)
296 4eaq_A DTMP kinase, thymidylat 96.1 0.004 1.4E-07 51.6 3.6 24 84-107 28-51 (229)
297 1uj2_A Uridine-cytidine kinase 96.1 0.0036 1.2E-07 52.6 3.5 23 84-106 24-46 (252)
298 2w0m_A SSO2452; RECA, SSPF, un 96.0 0.0045 1.5E-07 51.0 3.9 23 84-106 25-47 (235)
299 3t1o_A Gliding protein MGLA; G 96.0 0.009 3.1E-07 47.6 5.6 22 85-106 17-38 (198)
300 2qmh_A HPR kinase/phosphorylas 96.0 0.0028 9.5E-08 50.8 2.4 23 84-106 36-58 (205)
301 2ce2_X GTPase HRAS; signaling 96.0 0.018 6.3E-07 44.1 7.2 23 84-106 5-27 (166)
302 1uf9_A TT1252 protein; P-loop, 96.0 0.0035 1.2E-07 50.5 3.1 22 84-105 10-31 (203)
303 1q3t_A Cytidylate kinase; nucl 96.0 0.0068 2.3E-07 50.3 4.9 24 83-106 17-40 (236)
304 3pqc_A Probable GTP-binding pr 96.0 0.03 1E-06 44.3 8.6 23 83-105 24-46 (195)
305 1m7b_A RND3/RHOE small GTP-bin 96.0 0.0017 5.7E-08 51.6 1.1 23 84-106 9-31 (184)
306 1htw_A HI0065; nucleotide-bind 96.0 0.0045 1.5E-07 48.0 3.5 23 84-106 35-57 (158)
307 1wp9_A ATP-dependent RNA helic 96.0 0.024 8.3E-07 51.9 9.1 23 84-106 25-47 (494)
308 1gtv_A TMK, thymidylate kinase 96.0 0.0015 5.3E-08 53.2 0.8 22 85-106 3-24 (214)
309 2h92_A Cytidylate kinase; ross 96.0 0.0047 1.6E-07 50.6 3.7 23 84-106 5-27 (219)
310 3asz_A Uridine kinase; cytidin 96.0 0.0038 1.3E-07 50.8 3.2 23 84-106 8-30 (211)
311 1znw_A Guanylate kinase, GMP k 96.0 0.005 1.7E-07 50.0 3.8 23 84-106 22-44 (207)
312 1ls1_A Signal recognition part 96.0 0.011 3.8E-07 50.9 6.1 23 85-107 101-123 (295)
313 2f6r_A COA synthase, bifunctio 95.9 0.0042 1.4E-07 53.2 3.4 22 84-106 77-98 (281)
314 1xjc_A MOBB protein homolog; s 95.9 0.0058 2E-07 47.8 3.9 25 83-107 5-29 (169)
315 1r2q_A RAS-related protein RAB 95.9 0.03 1E-06 43.1 8.2 23 84-106 8-30 (170)
316 3q3j_B RHO-related GTP-binding 95.9 0.0027 9.2E-08 51.9 2.1 23 84-106 29-51 (214)
317 3bwd_D RAC-like GTP-binding pr 95.9 0.0034 1.2E-07 49.4 2.6 24 83-106 9-32 (182)
318 3tqc_A Pantothenate kinase; bi 95.9 0.0095 3.2E-07 51.8 5.5 22 85-106 95-116 (321)
319 2z0m_A 337AA long hypothetical 95.9 0.015 5.2E-07 50.6 7.0 23 83-105 32-54 (337)
320 2qt1_A Nicotinamide riboside k 95.9 0.0029 9.8E-08 51.4 2.1 22 85-106 24-45 (207)
321 1g8f_A Sulfate adenylyltransfe 95.9 0.0061 2.1E-07 56.5 4.5 42 66-107 377-420 (511)
322 1upt_A ARL1, ADP-ribosylation 95.9 0.013 4.6E-07 45.3 6.0 23 84-106 9-31 (171)
323 2efe_B Small GTP-binding prote 95.9 0.023 7.8E-07 44.5 7.3 23 84-106 14-36 (181)
324 2ehv_A Hypothetical protein PH 95.9 0.0049 1.7E-07 51.4 3.6 21 84-104 32-52 (251)
325 1r8s_A ADP-ribosylation factor 95.9 0.08 2.7E-06 40.5 10.4 23 84-106 2-24 (164)
326 2z43_A DNA repair and recombin 95.9 0.017 5.7E-07 50.5 7.0 39 85-123 110-151 (324)
327 2eyu_A Twitching motility prot 95.9 0.0051 1.7E-07 52.0 3.6 24 83-106 26-49 (261)
328 2v6i_A RNA helicase; membrane, 95.8 0.015 5.2E-07 53.0 6.9 21 83-103 3-24 (431)
329 2bov_A RAla, RAS-related prote 95.8 0.03 1E-06 44.9 8.0 23 84-106 16-38 (206)
330 2a9k_A RAS-related protein RAL 95.8 0.027 9.3E-07 44.2 7.6 23 84-106 20-42 (187)
331 2bme_A RAB4A, RAS-related prot 95.8 0.029 1E-06 44.1 7.8 23 84-106 12-34 (186)
332 3ld9_A DTMP kinase, thymidylat 95.8 0.0059 2E-07 50.2 3.6 37 70-106 9-45 (223)
333 2wjy_A Regulator of nonsense t 95.8 0.017 5.7E-07 56.9 7.4 39 66-107 358-396 (800)
334 1np6_A Molybdopterin-guanine d 95.8 0.0073 2.5E-07 47.6 3.9 24 83-106 7-30 (174)
335 3oes_A GTPase rhebl1; small GT 95.8 0.0094 3.2E-07 47.9 4.7 23 84-106 26-48 (201)
336 2oap_1 GSPE-2, type II secreti 95.8 0.007 2.4E-07 56.3 4.4 38 67-106 247-284 (511)
337 3lxx_A GTPase IMAP family memb 95.8 0.018 6E-07 47.8 6.5 23 84-106 31-53 (239)
338 1gm5_A RECG; helicase, replica 95.8 0.02 6.9E-07 56.0 7.8 40 65-104 372-411 (780)
339 3reg_A RHO-like small GTPase; 95.8 0.0027 9.1E-08 50.9 1.4 23 84-106 25-47 (194)
340 2xxa_A Signal recognition part 95.8 0.066 2.3E-06 48.6 10.7 25 84-108 102-126 (433)
341 1gwn_A RHO-related GTP-binding 95.8 0.0024 8.4E-08 51.8 1.1 23 84-106 30-52 (205)
342 4a74_A DNA repair and recombin 95.8 0.0045 1.5E-07 51.0 2.7 22 85-106 28-49 (231)
343 3tkl_A RAS-related protein RAB 95.8 0.019 6.4E-07 45.7 6.4 23 84-106 18-40 (196)
344 3eph_A TRNA isopentenyltransfe 95.8 0.006 2E-07 54.5 3.6 23 84-106 4-26 (409)
345 1rj9_A FTSY, signal recognitio 95.7 0.0072 2.5E-07 52.3 4.0 24 84-107 104-127 (304)
346 1z06_A RAS-related protein RAB 95.7 0.036 1.2E-06 43.9 8.0 23 84-106 22-44 (189)
347 4dsu_A GTPase KRAS, isoform 2B 95.7 0.026 8.9E-07 44.5 7.1 23 84-106 6-28 (189)
348 1sky_E F1-ATPase, F1-ATP synth 95.7 0.016 5.3E-07 53.0 6.2 35 69-106 141-175 (473)
349 2f7s_A C25KG, RAS-related prot 95.7 0.036 1.2E-06 45.0 8.0 22 84-105 27-48 (217)
350 3bh0_A DNAB-like replicative h 95.7 0.037 1.2E-06 48.1 8.4 35 85-122 71-105 (315)
351 1mh1_A RAC1; GTP-binding, GTPa 95.7 0.016 5.6E-07 45.6 5.7 23 84-106 7-29 (186)
352 2v9p_A Replication protein E1; 95.7 0.0085 2.9E-07 51.7 4.1 24 83-106 127-150 (305)
353 2va8_A SSO2462, SKI2-type heli 95.7 0.027 9.2E-07 54.9 8.2 22 82-103 46-67 (715)
354 3lnc_A Guanylate kinase, GMP k 95.7 0.0045 1.5E-07 51.2 2.3 23 84-106 29-52 (231)
355 4dhe_A Probable GTP-binding pr 95.6 0.14 4.8E-06 41.5 11.4 24 82-105 29-52 (223)
356 2fg5_A RAB-22B, RAS-related pr 95.6 0.034 1.2E-06 44.2 7.4 23 84-106 25-47 (192)
357 1zbd_A Rabphilin-3A; G protein 95.6 0.029 1E-06 45.0 7.0 23 84-106 10-32 (203)
358 2ew1_A RAS-related protein RAB 95.6 0.035 1.2E-06 44.7 7.3 23 84-106 28-50 (201)
359 2zpa_A Uncharacterized protein 95.6 0.02 6.9E-07 54.6 6.6 99 67-177 178-277 (671)
360 2i1q_A DNA repair and recombin 95.6 0.019 6.6E-07 50.0 6.2 22 85-106 101-122 (322)
361 2hup_A RAS-related protein RAB 95.6 0.032 1.1E-06 44.8 7.1 23 84-106 31-53 (201)
362 2dr3_A UPF0273 protein PH0284; 95.5 0.0084 2.9E-07 49.9 3.6 23 84-106 25-47 (247)
363 2xgj_A ATP-dependent RNA helic 95.5 0.041 1.4E-06 55.6 9.1 52 49-103 69-122 (1010)
364 2jeo_A Uridine-cytidine kinase 95.5 0.0083 2.8E-07 50.1 3.5 23 84-106 27-49 (245)
365 1zd9_A ADP-ribosylation factor 95.5 0.072 2.5E-06 42.1 8.9 23 84-106 24-46 (188)
366 2il1_A RAB12; G-protein, GDP, 95.5 0.031 1.1E-06 44.5 6.7 21 85-105 29-49 (192)
367 2ged_A SR-beta, signal recogni 95.5 0.016 5.6E-07 46.0 5.0 24 83-106 49-72 (193)
368 3fdi_A Uncharacterized protein 95.5 0.011 3.6E-07 47.9 3.9 24 83-106 7-30 (201)
369 3p32_A Probable GTPase RV1496/ 95.5 0.017 5.7E-07 51.2 5.5 27 81-107 78-104 (355)
370 4edh_A DTMP kinase, thymidylat 95.5 0.0093 3.2E-07 48.7 3.5 25 84-108 8-32 (213)
371 3gmt_A Adenylate kinase; ssgci 95.5 0.013 4.5E-07 48.2 4.3 22 85-106 11-32 (230)
372 1wf3_A GTP-binding protein; GT 95.4 0.55 1.9E-05 40.3 14.9 23 84-106 9-31 (301)
373 4a1f_A DNAB helicase, replicat 95.4 0.1 3.5E-06 45.7 10.2 35 85-122 49-83 (338)
374 2p6r_A Afuhel308 helicase; pro 95.4 0.024 8.2E-07 55.1 6.8 32 65-102 29-60 (702)
375 3aez_A Pantothenate kinase; tr 95.4 0.01 3.4E-07 51.6 3.6 23 85-107 93-115 (312)
376 2j1l_A RHO-related GTP-binding 95.4 0.018 6.3E-07 46.8 5.0 22 84-105 36-57 (214)
377 2dyk_A GTP-binding protein; GT 95.4 0.0095 3.2E-07 45.7 3.1 24 83-106 2-25 (161)
378 3tif_A Uncharacterized ABC tra 95.3 0.0091 3.1E-07 49.6 3.1 24 83-106 32-55 (235)
379 1wrb_A DJVLGB; RNA helicase, D 95.3 0.052 1.8E-06 45.3 7.9 18 83-100 61-78 (253)
380 1nlf_A Regulatory protein REPA 95.3 0.0092 3.1E-07 50.9 3.2 24 84-107 32-55 (279)
381 3v9p_A DTMP kinase, thymidylat 95.3 0.0084 2.9E-07 49.4 2.8 24 84-107 27-50 (227)
382 3b9q_A Chloroplast SRP recepto 95.3 0.011 3.8E-07 51.1 3.6 23 85-107 103-125 (302)
383 2gza_A Type IV secretion syste 95.3 0.016 5.6E-07 51.4 4.8 34 71-106 166-199 (361)
384 3lda_A DNA repair protein RAD5 95.3 0.026 9E-07 50.7 6.2 39 85-123 181-222 (400)
385 3tqf_A HPR(Ser) kinase; transf 95.3 0.0096 3.3E-07 46.5 2.9 22 84-105 18-39 (181)
386 2xzl_A ATP-dependent helicase 95.3 0.016 5.5E-07 57.0 5.1 38 66-106 362-399 (802)
387 2ewv_A Twitching motility prot 95.3 0.01 3.6E-07 52.9 3.5 24 83-106 137-160 (372)
388 1cr0_A DNA primase/helicase; R 95.3 0.012 4E-07 50.7 3.7 24 84-107 37-60 (296)
389 1vma_A Cell division protein F 95.3 0.011 3.9E-07 51.1 3.6 23 85-107 107-129 (306)
390 2f9l_A RAB11B, member RAS onco 95.3 0.011 3.8E-07 47.5 3.3 23 84-106 7-29 (199)
391 2ocp_A DGK, deoxyguanosine kin 95.2 0.0095 3.3E-07 49.6 2.9 23 84-106 4-26 (241)
392 1pzn_A RAD51, DNA repair and r 95.2 0.036 1.2E-06 48.9 6.8 22 85-106 134-155 (349)
393 3e70_C DPA, signal recognition 95.2 0.012 4E-07 51.5 3.6 23 85-107 132-154 (328)
394 3tbk_A RIG-I helicase domain; 95.2 0.12 4E-06 48.4 10.7 24 83-106 20-43 (555)
395 2onk_A Molybdate/tungstate ABC 95.2 0.011 3.6E-07 49.3 3.2 24 83-106 25-48 (240)
396 2yc2_C IFT27, small RAB-relate 95.2 0.024 8.3E-07 45.5 5.3 22 84-105 22-43 (208)
397 4a2p_A RIG-I, retinoic acid in 95.2 0.18 6.1E-06 47.2 12.0 24 83-106 23-46 (556)
398 2cbz_A Multidrug resistance-as 95.2 0.011 3.7E-07 49.2 3.1 42 155-196 145-190 (237)
399 1sq5_A Pantothenate kinase; P- 95.2 0.019 6.4E-07 49.8 4.7 23 84-106 82-104 (308)
400 2zts_A Putative uncharacterize 95.2 0.0086 3E-07 49.9 2.5 21 85-105 33-53 (251)
401 1oix_A RAS-related protein RAB 95.2 0.011 3.6E-07 47.3 3.0 22 85-106 32-53 (191)
402 3l9o_A ATP-dependent RNA helic 95.2 0.056 1.9E-06 55.2 8.8 23 83-105 200-222 (1108)
403 2pcj_A ABC transporter, lipopr 95.2 0.0097 3.3E-07 49.0 2.7 23 84-106 32-54 (224)
404 3kta_A Chromosome segregation 95.1 0.012 4.1E-07 46.5 3.1 23 84-106 28-50 (182)
405 3cr8_A Sulfate adenylyltranfer 95.1 0.0096 3.3E-07 55.9 2.9 41 67-107 352-394 (552)
406 2q6t_A DNAB replication FORK h 95.1 0.16 5.5E-06 46.4 10.9 36 85-122 203-238 (444)
407 1a7j_A Phosphoribulokinase; tr 95.1 0.0079 2.7E-07 51.7 2.0 23 84-106 7-29 (290)
408 2wji_A Ferrous iron transport 95.1 0.013 4.4E-07 45.5 3.1 22 84-105 5-26 (165)
409 1sgw_A Putative ABC transporte 95.1 0.012 4.2E-07 48.0 3.1 23 84-106 37-59 (214)
410 1b0u_A Histidine permease; ABC 95.1 0.012 4.3E-07 49.6 3.2 23 84-106 34-56 (262)
411 2zej_A Dardarin, leucine-rich 95.0 0.011 3.8E-07 46.8 2.7 21 84-104 4-24 (184)
412 3o8b_A HCV NS3 protease/helica 95.0 0.09 3.1E-06 50.3 9.2 28 154-181 317-344 (666)
413 3lv8_A DTMP kinase, thymidylat 95.0 0.014 4.6E-07 48.5 3.2 24 84-107 29-52 (236)
414 2gks_A Bifunctional SAT/APS ki 95.0 0.02 6.8E-07 53.8 4.7 41 66-106 354-396 (546)
415 2zu0_C Probable ATP-dependent 95.0 0.016 5.6E-07 49.0 3.7 41 155-195 182-224 (267)
416 2zj8_A DNA helicase, putative 95.0 0.03 1E-06 54.6 6.0 18 83-100 40-57 (720)
417 3fvq_A Fe(3+) IONS import ATP- 95.0 0.014 4.7E-07 51.6 3.3 23 84-106 32-54 (359)
418 3tmk_A Thymidylate kinase; pho 95.0 0.018 6.2E-07 47.0 3.8 24 83-106 6-29 (216)
419 1m8p_A Sulfate adenylyltransfe 95.0 0.015 5.1E-07 54.9 3.7 23 84-106 398-420 (573)
420 1zj6_A ADP-ribosylation factor 95.0 0.024 8.3E-07 44.8 4.5 28 78-105 12-39 (187)
421 2d2e_A SUFC protein; ABC-ATPas 94.9 0.016 5.6E-07 48.5 3.5 41 155-195 161-203 (250)
422 2lkc_A Translation initiation 94.9 0.02 6.8E-07 44.7 3.8 25 82-106 8-32 (178)
423 2olj_A Amino acid ABC transpor 94.9 0.015 5.1E-07 49.2 3.2 24 83-106 51-74 (263)
424 2og2_A Putative signal recogni 94.9 0.016 5.6E-07 51.2 3.6 23 85-107 160-182 (359)
425 3rlf_A Maltose/maltodextrin im 94.9 0.017 6E-07 51.3 3.7 23 84-106 31-53 (381)
426 4tmk_A Protein (thymidylate ki 94.9 0.016 5.5E-07 47.2 3.3 25 84-108 5-29 (213)
427 1p5z_B DCK, deoxycytidine kina 94.9 0.0062 2.1E-07 51.5 0.8 23 84-106 26-48 (263)
428 3t5d_A Septin-7; GTP-binding p 94.9 0.14 4.7E-06 43.4 9.2 20 84-103 10-29 (274)
429 2nzj_A GTP-binding protein REM 94.9 0.016 5.5E-07 45.1 3.2 22 84-105 6-27 (175)
430 1g6h_A High-affinity branched- 94.9 0.014 4.9E-07 49.1 3.0 23 84-106 35-57 (257)
431 2it1_A 362AA long hypothetical 94.8 0.018 6.2E-07 51.0 3.7 23 84-106 31-53 (362)
432 3gfo_A Cobalt import ATP-bindi 94.8 0.013 4.3E-07 49.9 2.6 23 84-106 36-58 (275)
433 2f1r_A Molybdopterin-guanine d 94.8 0.0075 2.6E-07 47.4 1.1 24 84-107 4-27 (171)
434 2pze_A Cystic fibrosis transme 94.8 0.015 5.2E-07 48.0 3.0 41 155-195 148-190 (229)
435 2z83_A Helicase/nucleoside tri 94.8 0.067 2.3E-06 49.1 7.6 23 83-105 22-45 (459)
436 1vpl_A ABC transporter, ATP-bi 94.8 0.016 5.5E-07 48.7 3.2 24 83-106 42-65 (256)
437 1ji0_A ABC transporter; ATP bi 94.8 0.015 5.2E-07 48.4 3.0 23 84-106 34-56 (240)
438 2yyz_A Sugar ABC transporter, 94.8 0.018 6.3E-07 50.9 3.7 23 84-106 31-53 (359)
439 1mv5_A LMRA, multidrug resista 94.8 0.013 4.5E-07 48.9 2.6 23 84-106 30-52 (243)
440 2ff7_A Alpha-hemolysin translo 94.8 0.015 5.2E-07 48.6 3.0 23 84-106 37-59 (247)
441 2axn_A 6-phosphofructo-2-kinas 94.8 0.017 5.8E-07 53.9 3.6 23 84-106 37-59 (520)
442 2ixe_A Antigen peptide transpo 94.8 0.016 5.5E-07 49.2 3.1 42 154-195 173-217 (271)
443 3hdt_A Putative kinase; struct 94.8 0.021 7.3E-07 46.9 3.8 23 84-106 16-38 (223)
444 1z47_A CYSA, putative ABC-tran 94.8 0.015 5.3E-07 51.3 3.1 23 84-106 43-65 (355)
445 2rcn_A Probable GTPase ENGC; Y 94.8 0.01 3.6E-07 52.4 2.0 23 84-106 217-239 (358)
446 2ghi_A Transport protein; mult 94.8 0.016 5.5E-07 48.9 3.1 42 155-196 173-215 (260)
447 2qi9_C Vitamin B12 import ATP- 94.8 0.016 5.4E-07 48.6 3.0 23 84-106 28-50 (249)
448 1z08_A RAS-related protein RAB 94.8 0.019 6.6E-07 44.4 3.4 23 84-106 8-30 (170)
449 1v43_A Sugar-binding transport 94.8 0.02 6.7E-07 50.9 3.7 23 84-106 39-61 (372)
450 2whx_A Serine protease/ntpase/ 94.7 0.096 3.3E-06 50.0 8.7 23 83-105 187-210 (618)
451 1tq4_A IIGP1, interferon-induc 94.7 0.044 1.5E-06 49.4 6.0 23 84-106 71-93 (413)
452 4g1u_C Hemin import ATP-bindin 94.7 0.017 5.7E-07 49.0 3.1 23 84-106 39-61 (266)
453 2www_A Methylmalonic aciduria 94.7 0.041 1.4E-06 48.5 5.7 24 83-106 75-98 (349)
454 1ky3_A GTP-binding protein YPT 94.7 0.02 6.9E-07 44.8 3.3 23 84-106 10-32 (182)
455 2yz2_A Putative ABC transporte 94.7 0.018 6.1E-07 48.8 3.1 42 154-195 155-198 (266)
456 1c1y_A RAS-related protein RAP 94.7 0.02 7E-07 44.0 3.3 23 84-106 5-27 (167)
457 2ihy_A ABC transporter, ATP-bi 94.6 0.018 6.1E-07 49.1 3.0 23 84-106 49-71 (279)
458 3q85_A GTP-binding protein REM 94.6 0.02 6.7E-07 44.3 3.1 21 84-104 4-24 (169)
459 1g16_A RAS-related protein SEC 94.6 0.018 6.2E-07 44.5 2.9 23 84-106 5-27 (170)
460 1g29_1 MALK, maltose transport 94.6 0.018 6.2E-07 51.2 3.1 23 84-106 31-53 (372)
461 2wjg_A FEOB, ferrous iron tran 94.6 0.02 6.8E-07 45.2 3.1 22 84-105 9-30 (188)
462 2erx_A GTP-binding protein DI- 94.6 0.021 7.1E-07 44.2 3.2 22 84-105 5-26 (172)
463 2yhs_A FTSY, cell division pro 94.6 0.022 7.5E-07 52.3 3.6 23 85-107 296-318 (503)
464 2nq2_C Hypothetical ABC transp 94.5 0.019 6.5E-07 48.2 3.0 23 84-106 33-55 (253)
465 1svi_A GTP-binding protein YSX 94.5 0.021 7E-07 45.5 3.1 24 82-105 23-46 (195)
466 1z63_A Helicase of the SNF2/RA 94.5 0.22 7.7E-06 46.0 10.5 110 83-196 57-189 (500)
467 3q72_A GTP-binding protein RAD 94.5 0.018 6.1E-07 44.4 2.6 21 84-104 4-24 (166)
468 1yks_A Genome polyprotein [con 94.5 0.058 2E-06 49.2 6.4 23 83-105 9-32 (440)
469 3bgw_A DNAB-like replicative h 94.5 0.1 3.4E-06 47.7 7.9 35 85-122 200-234 (444)
470 4hlc_A DTMP kinase, thymidylat 94.5 0.027 9.2E-07 45.6 3.6 22 85-106 5-26 (205)
471 1lw7_A Transcriptional regulat 94.5 0.018 6.2E-07 51.2 2.8 23 84-106 172-194 (365)
472 1f2t_A RAD50 ABC-ATPase; DNA d 94.5 0.026 8.9E-07 43.1 3.3 24 85-108 26-49 (149)
473 2oil_A CATX-8, RAS-related pro 94.4 0.024 8.3E-07 45.0 3.3 23 84-106 27-49 (193)
474 2hxs_A RAB-26, RAS-related pro 94.4 0.021 7.3E-07 44.5 2.9 23 84-106 8-30 (178)
475 3d31_A Sulfate/molybdate ABC t 94.4 0.016 5.5E-07 51.0 2.4 23 84-106 28-50 (348)
476 3i5x_A ATP-dependent RNA helic 94.4 0.36 1.2E-05 45.4 11.9 20 81-100 110-129 (563)
477 3con_A GTPase NRAS; structural 94.4 0.025 8.4E-07 44.8 3.3 23 84-106 23-45 (190)
478 3thx_B DNA mismatch repair pro 94.4 0.099 3.4E-06 52.0 8.1 21 85-105 676-696 (918)
479 2pjz_A Hypothetical protein ST 94.4 0.019 6.4E-07 48.5 2.6 38 155-194 146-184 (263)
480 1x6v_B Bifunctional 3'-phospho 94.4 0.023 8E-07 53.9 3.5 23 84-106 54-76 (630)
481 2gj8_A MNME, tRNA modification 94.4 0.021 7.1E-07 44.7 2.7 22 84-105 6-27 (172)
482 3thx_A DNA mismatch repair pro 94.4 0.096 3.3E-06 52.2 8.0 20 85-104 665-684 (934)
483 1moz_A ARL1, ADP-ribosylation 94.4 0.016 5.3E-07 45.6 2.0 22 83-104 19-40 (183)
484 3ihw_A Centg3; RAS, centaurin, 94.4 0.027 9.1E-07 44.6 3.4 22 85-106 23-44 (184)
485 1zu4_A FTSY; GTPase, signal re 94.4 0.027 9.1E-07 49.1 3.6 23 85-107 108-130 (320)
486 2y8e_A RAB-protein 6, GH09086P 94.3 0.023 7.8E-07 44.3 2.9 23 84-106 16-38 (179)
487 3iev_A GTP-binding protein ERA 94.3 0.26 8.9E-06 42.5 9.8 22 85-106 13-34 (308)
488 2fn4_A P23, RAS-related protei 94.3 0.024 8.1E-07 44.3 3.0 23 84-106 11-33 (181)
489 3gj0_A GTP-binding nuclear pro 94.3 0.024 8.2E-07 46.2 3.1 20 85-104 18-37 (221)
490 1bif_A 6-phosphofructo-2-kinas 94.3 0.026 8.8E-07 52.1 3.6 24 84-107 41-64 (469)
491 2yv5_A YJEQ protein; hydrolase 94.3 0.039 1.3E-06 47.6 4.5 22 84-106 167-188 (302)
492 2qm8_A GTPase/ATPase; G protei 94.3 0.029 9.8E-07 49.3 3.7 26 81-106 54-79 (337)
493 1c9k_A COBU, adenosylcobinamid 94.3 0.024 8.2E-07 44.7 2.8 21 85-105 2-22 (180)
494 3kkq_A RAS-related protein M-R 94.3 0.028 9.7E-07 44.1 3.3 22 85-106 21-42 (183)
495 3c5c_A RAS-like protein 12; GD 94.2 0.029 9.9E-07 44.5 3.3 23 84-106 23-45 (187)
496 3hjn_A DTMP kinase, thymidylat 94.2 0.031 1.1E-06 44.9 3.5 24 85-108 3-26 (197)
497 4a2q_A RIG-I, retinoic acid in 94.2 0.23 8E-06 48.9 10.5 37 67-106 251-287 (797)
498 3gd7_A Fusion complex of cysti 94.2 0.026 8.9E-07 50.5 3.3 42 155-196 173-215 (390)
499 2g6b_A RAS-related protein RAB 94.2 0.029 1E-06 43.8 3.3 23 84-106 12-34 (180)
500 2ykg_A Probable ATP-dependent 94.2 0.22 7.6E-06 48.1 10.1 23 83-105 29-51 (696)
No 1
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=8.7e-38 Score=280.37 Aligned_cols=273 Identities=38% Similarity=0.662 Sum_probs=242.2
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (345)
...||.++|+|.+|++++|+++++..+..++..+..++++|+||||||||++++++++.+.+... ...+.++++++..+
T Consensus 11 ~~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~-~~~~~~~~~~~~~~ 89 (340)
T 1sxj_C 11 ENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY-SNMVLELNASDDRG 89 (340)
T ss_dssp -CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH-HHHEEEECTTSCCS
T ss_pred cCCchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc-cceEEEEcCccccc
Confidence 45699999999999999999999999999999999888999999999999999999999865432 34577788877666
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccc
Q 019145 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206 (345)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~ 206 (345)
.+.+++.+..+..... ...+.+++++|||+|.++.+.++.|++++++++..+.+|+++|...++.+++.+||
T Consensus 90 ~~~ir~~i~~~~~~~~--------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~ 161 (340)
T 1sxj_C 90 IDVVRNQIKDFASTRQ--------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQC 161 (340)
T ss_dssp HHHHHTHHHHHHHBCC--------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHHHHHHHHhhcc--------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhc
Confidence 7777766655543210 11134789999999999999999999999999999999999999999999999999
Q ss_pred eeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCC----CCCHHHHHHhhCCCCH
Q 019145 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS----SITSKDLISVSGVIPP 282 (345)
Q Consensus 207 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~----~it~~~v~~~~~~~~~ 282 (345)
..+.|.+++.+++..++..+++.+++.+++++++.+++.++||+|.+++.++.++.+++. .||.++|.++++....
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~~~~~~~ 241 (340)
T 1sxj_C 162 TRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRP 241 (340)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHHTTCCCH
T ss_pred eeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccccccHHHHHHHhCCCCH
Confidence 999999999999999999999989999999999999999999999999999988766542 6999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHH
Q 019145 283 EVVEGLFAVCRSGDFDLANKEVNNIIA-EGYPASLLLSQVTLLLFVL 328 (345)
Q Consensus 283 ~~~~~l~~~~~~~~~~~a~~~l~~l~~-~g~~~~~i~~~l~~~~~~~ 328 (345)
..++++++++.+++...++..+..++. .|++|..|+..|.++++.+
T Consensus 242 ~~i~~l~~~i~~~~~~~al~~l~~l~~~~g~~~~~i~~~l~~~~~~~ 288 (340)
T 1sxj_C 242 SDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDY 288 (340)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999999998 9999999999999988764
No 2
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=100.00 E-value=1.6e-37 Score=276.47 Aligned_cols=271 Identities=46% Similarity=0.785 Sum_probs=237.2
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (345)
...||.++|+|.+|++++|+++.+..+..++..+..++++|+||||||||++++++++.+.+... ...++.+++++..+
T Consensus 3 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~-~~~~~~~~~~~~~~ 81 (319)
T 2chq_A 3 NFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENW-RDNFIEMNASDERG 81 (319)
T ss_dssp ---CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCH-HHHCEEEETTSTTC
T ss_pred ccccHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcc-cCCeEEEeCccccC
Confidence 45699999999999999999999999999999988888999999999999999999999855432 34577888877655
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccc
Q 019145 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206 (345)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~ 206 (345)
...++..+..+..... ...+++++++|||+|.++.+.++.|++++++++..+.+|+++|...++.+++.+||
T Consensus 82 ~~~~~~~~~~~~~~~~--------~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 153 (319)
T 2chq_A 82 IDVVRHKIKEFARTAP--------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (319)
T ss_dssp TTTSSHHHHHHHHSCC--------SSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTC
T ss_pred hHHHHHHHHHHHhcCC--------CCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhC
Confidence 5555554444431110 11235789999999999999999999999998889999999999999999999999
Q ss_pred eeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhhCCCCHHHHH
Q 019145 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVE 286 (345)
Q Consensus 207 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~~~~~~~~ 286 (345)
..+.|++++.+++..++..++..+|+.+++++++.+++.++||+|.+++.++.++.. ++.||.++|.++++......++
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~-~~~i~~~~v~~~~~~~~~~~~~ 232 (319)
T 2chq_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAI-GEVVDADTIYQITATARPEEMT 232 (319)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHS-SSCBCHHHHHHHTTCCCHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHCCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999998865 5679999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHH
Q 019145 287 GLFAVCRSGDFDLANKEVNNIIA-EGYPASLLLSQVTLLLFV 327 (345)
Q Consensus 287 ~l~~~~~~~~~~~a~~~l~~l~~-~g~~~~~i~~~l~~~~~~ 327 (345)
++++++..++...++..+.+++. .|++|..++..+.+++++
T Consensus 233 ~l~~~~~~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~ 274 (319)
T 2chq_A 233 ELIQTALKGNFMEARELLDRLMVEYGMSGEDIVAQLFREIIS 274 (319)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999998 999999999999999886
No 3
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=3.6e-37 Score=278.07 Aligned_cols=282 Identities=52% Similarity=0.872 Sum_probs=239.7
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (345)
.+..||.++|+|.+|++++|+++.+..+..++..+..++++|+||||||||++++++++.+.++......+..+++.+..
T Consensus 22 ~~~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 101 (353)
T 1sxj_D 22 LAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDER 101 (353)
T ss_dssp ----CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCC
T ss_pred ccCccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccccc
Confidence 56679999999999999999999999999999998878899999999999999999999975432234567888887766
Q ss_pred chHHHHHHHHHHHHhhhcCCCC--CCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhh
Q 019145 126 GINVVRTKIKTFAAVAVGSGQR--RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203 (345)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~ 203 (345)
+...+...+..+.......... ......+.+++|+|||++.++...++.|++++++++..+.+|+++|.+..+.+++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~ 181 (353)
T 1sxj_D 102 GISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLA 181 (353)
T ss_dssp CHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred chHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhh
Confidence 6666665555544321110000 00011235689999999999999999999999998888999999999999999999
Q ss_pred ccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCC-----CCCHHHHHHhhC
Q 019145 204 SRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGS-----SITSKDLISVSG 278 (345)
Q Consensus 204 ~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~-----~it~~~v~~~~~ 278 (345)
+||..+.|.+++.+++..++..++..+++.+++++++.+++.++||+|.+++.++.++.+++. .||.++|.++++
T Consensus 182 sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 182 SQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred ccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999998877643 699999999999
Q ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 019145 279 VIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFV 327 (345)
Q Consensus 279 ~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~ 327 (345)
......++++++++.+++...++..+.++...|++|..|++.+.+++.+
T Consensus 262 ~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~ 310 (353)
T 1sxj_D 262 VVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYIT 310 (353)
T ss_dssp CCCSHHHHHHHHHHHSCCHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 9989999999999999999999999999999999999999999988765
No 4
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=5.5e-37 Score=273.86 Aligned_cols=272 Identities=45% Similarity=0.763 Sum_probs=237.9
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (345)
....||.++|+|.+|++++|+++.+..+..++..+..++++|+||||||||++++++++.+.+.. ....++.+++.+..
T Consensus 10 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~-~~~~~~~~~~~~~~ 88 (327)
T 1iqp_A 10 VLEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGEN-WRHNFLELNASDER 88 (327)
T ss_dssp HTTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGG-HHHHEEEEETTCHH
T ss_pred ccCCchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-ccCceEEeeccccC
Confidence 45679999999999999999999999999999999888899999999999999999999975432 12457778887755
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhcc
Q 019145 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASR 205 (345)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r 205 (345)
+...++..+..+...... ..+++++|+|||++.++.+.++.|++++++++..+.+|+++|....+.+++.+|
T Consensus 89 ~~~~~~~~~~~~~~~~~~--------~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr 160 (327)
T 1iqp_A 89 GINVIREKVKEFARTKPI--------GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 160 (327)
T ss_dssp HHHTTHHHHHHHHHSCCG--------GGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT
T ss_pred chHHHHHHHHHHHhhCCc--------CCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh
Confidence 555555545444321110 113568999999999999999999999999888999999999999999999999
Q ss_pred ceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhhCCCCHHHH
Q 019145 206 CAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285 (345)
Q Consensus 206 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~~~~~~~ 285 (345)
|..+.|+|++.+++..++..++..+++.+++++++.+++.++||+|.+++.++.++.. ...||.++|.+.++...+..+
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~-~~~i~~~~v~~~~~~~~~~~i 239 (327)
T 1iqp_A 161 CAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAAL-DKKITDENVFMVASRARPEDI 239 (327)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CSEECHHHHHHHTTCCCHHHH
T ss_pred CcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999988754 446999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHH
Q 019145 286 EGLFAVCRSGDFDLANKEVNNII-AEGYPASLLLSQVTLLLFV 327 (345)
Q Consensus 286 ~~l~~~~~~~~~~~a~~~l~~l~-~~g~~~~~i~~~l~~~~~~ 327 (345)
+++++++..++...++..+.+++ ..|++|..+++.|.+++++
T Consensus 240 ~~l~~~~~~~~~~~~~~~~~~ll~~~g~~~~~i~~~l~~~~~~ 282 (327)
T 1iqp_A 240 REMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFN 282 (327)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999 8999999999999998876
No 5
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=100.00 E-value=8.5e-36 Score=271.05 Aligned_cols=274 Identities=24% Similarity=0.331 Sum_probs=239.0
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC-------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------- 112 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~~------------- 112 (345)
+..+|.++|+|.+|++++|+++.+..+..++..+..++ ++|+||+|||||++++++++.+.+....
T Consensus 2 ~~~~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 81 (373)
T 1jr3_A 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 81 (373)
T ss_dssp -CCCHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHH
T ss_pred CcHHHHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH
Confidence 35689999999999999999999999999999888766 6999999999999999999998664321
Q ss_pred -----CCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceE
Q 019145 113 -----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (345)
Q Consensus 113 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ 187 (345)
...++.+++....+.+.++..+..+... ...+++.+|+|||+|.++...++.|++++++++..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~ 151 (373)
T 1jr3_A 82 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA----------PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK 151 (373)
T ss_dssp HHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSC----------CSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEE
T ss_pred HhccCCCceEEecccccCCHHHHHHHHHHHhhc----------cccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceE
Confidence 1134555554434444455544443211 1234568999999999999999999999999888999
Q ss_pred EEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Q 019145 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~ 267 (345)
+|++++....+.+.+.+||..+.|++++.+++..++..+++.+|+.+++++++.+++.++||+|.+.+.++++..+.++.
T Consensus 152 ~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~~~~ 231 (373)
T 1jr3_A 152 FLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ 231 (373)
T ss_dssp EEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHTTTC
T ss_pred EEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCc
Confidence 99999988899999999999999999999999999999999999999999999999999999999999999998877788
Q ss_pred CCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 268 ITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 268 it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
||.++|.++++......++++++++..++...++..+..+...|+++..++..+.+++++++.
T Consensus 232 i~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~l~~l~~~~r~l~~ 294 (373)
T 1jr3_A 232 VSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAM 294 (373)
T ss_dssp BCHHHHHHHTTCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998864
No 6
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=100.00 E-value=5.4e-36 Score=267.12 Aligned_cols=264 Identities=25% Similarity=0.370 Sum_probs=219.0
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcE-EEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHM-LFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~l-ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (345)
....||.++|+|.+|++++|+++.+..+..++..+..+++ +++||||||||++++++++.+ +..++++++++.
T Consensus 11 ~~~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l------~~~~~~i~~~~~ 84 (324)
T 3u61_B 11 EKEHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV------NADMMFVNGSDC 84 (324)
T ss_dssp TTCSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT------TEEEEEEETTTC
T ss_pred cccchHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh------CCCEEEEccccc
Confidence 5677999999999999999999999999999999888775 777889999999999999998 678999998774
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-HHHHHHHHHHHhhcCCceEEEEecCcccccchhhh
Q 019145 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLA 203 (345)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~ 203 (345)
+...++..+..+.... ...+.+++|+|||+|.++ ++.++.|+++++.++.++.+|+++|...++.+++.
T Consensus 85 -~~~~i~~~~~~~~~~~---------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~ 154 (324)
T 3u61_B 85 -KIDFVRGPLTNFASAA---------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQ 154 (324)
T ss_dssp -CHHHHHTHHHHHHHBC---------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHH
T ss_pred -CHHHHHHHHHHHHhhc---------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHH
Confidence 4666666665544332 122367899999999999 99999999999998889999999999999999999
Q ss_pred ccceeEEecCCCHHH-------HHHHHHHHHHHhCCCCCH-HHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 019145 204 SRCAKFRFKPLSEEV-------MSSRVLHICNEEGLNLDA-EALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS 275 (345)
Q Consensus 204 ~r~~~i~~~~~~~~~-------~~~~l~~~~~~~~~~i~~-~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~ 275 (345)
+||.++.|++|+.++ +..++...+..+++.+++ ++++.+++.++||+|.+++.|+.++ .++.||.++|.+
T Consensus 155 sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~--~~~~i~~~~v~~ 232 (324)
T 3u61_B 155 SRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYS--SKGVLDAGILSL 232 (324)
T ss_dssp HHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHHG--GGTCBCC-----
T ss_pred hhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHHh--ccCCCCHHHHHH
Confidence 999999999999877 455666777889999988 9999999999999999999999988 456699999999
Q ss_pred hhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhh
Q 019145 276 VSGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVLMVQH 332 (345)
Q Consensus 276 ~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~ 332 (345)
+... .+.++.+++++..++...++..+.+++. +|..|++.|..++.+.+-.+
T Consensus 233 ~~~~--~~~i~~~~~~~~~~~~~~a~~~~~~l~~---~~~~i~~~l~~~~~~~~~~~ 284 (324)
T 3u61_B 233 VTND--RGAIDDVLESLKNKDVKQLRALAPKYAA---DYSWFVGKLAEEIYSRVTPQ 284 (324)
T ss_dssp ---------CHHHHHHHHTTCHHHHHHHHHHHSS---CHHHHHHHHHHHHHHHSCHH
T ss_pred HhCC--HHHHHHHHHHHHcCCHHHHHHHHHHhcc---CHHHHHHHHHHHHHHhCCHH
Confidence 8765 5678999999999999999999999987 89999999988887654333
No 7
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=9.7e-35 Score=258.84 Aligned_cols=271 Identities=38% Similarity=0.615 Sum_probs=235.1
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (345)
.+..||.++|+|..|++++|++..+..+..++..+..++++|+||+|+|||++++.+++.+.+.. ....++++++.+..
T Consensus 6 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~ 84 (323)
T 1sxj_B 6 SLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRS-YADGVLELNASDDR 84 (323)
T ss_dssp -CCCCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-HHHHEEEECTTSCC
T ss_pred cccCcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-ccCCEEEecCcccc
Confidence 34679999999999999999999999999999999888899999999999999999999975432 13457788887766
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhcc
Q 019145 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASR 205 (345)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r 205 (345)
+...+++.+..+...... ...+++.+|+|||++.++...++.|++++++++..+.+|++++....+.+++.+|
T Consensus 85 ~~~~i~~~~~~~~~~~~~-------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr 157 (323)
T 1sxj_B 85 GIDVVRNQIKHFAQKKLH-------LPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ 157 (323)
T ss_dssp SHHHHHTHHHHHHHBCCC-------CCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred ChHHHHHHHHHHHhcccc-------CCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhh
Confidence 666676666654421100 0123478999999999999999999999999888999999999999999999999
Q ss_pred ceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhhCCCCHHHH
Q 019145 206 CAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVV 285 (345)
Q Consensus 206 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~~~~~~~ 285 (345)
|..+.|++++.+++..++..++..+|+.+++++++.+++.++||+|.+++.+++++.. .+.|+.++|.++++......+
T Consensus 158 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~-~~~i~~~~v~~~~~~~~~~~i 236 (323)
T 1sxj_B 158 CAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAG-HGLVNADNVFKIVDSPHPLIV 236 (323)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HSSBCHHHHHHHHTSCCHHHH
T ss_pred ceEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCcCHHHHHHHHCCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999988854 356999999999999999899
Q ss_pred HHHHHHHHcCCHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHH
Q 019145 286 EGLFAVCRSGDFDLANKEVNN-IIAEGYPASLLLSQVTLLLFVL 328 (345)
Q Consensus 286 ~~l~~~~~~~~~~~a~~~l~~-l~~~g~~~~~i~~~l~~~~~~~ 328 (345)
++++++ ++...++..+.. ++..|+++..++..+.++++++
T Consensus 237 ~~~~~~---~~~~~~l~~l~~dl~~~g~~~~~i~~~l~~~~~~l 277 (323)
T 1sxj_B 237 KKMLLA---SNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNL 277 (323)
T ss_dssp HHHHSC---SSHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHTC
T ss_pred HHHHhc---CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 999887 888999999998 8889999999999998887763
No 8
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=100.00 E-value=1.9e-34 Score=265.54 Aligned_cols=262 Identities=22% Similarity=0.301 Sum_probs=220.7
Q ss_pred cchhhhhhCCCCCccccccHHHH---HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc
Q 019145 48 SQPWVEKYRPKQVKDVAHQEEVV---RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (345)
Q Consensus 48 ~~~~~~~~~p~~~~~~~g~~~~~---~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (345)
..||+++++|.+|++++|+++++ ..+...+..+..++++|+||||||||++|+++++.+ +..++.+++..
T Consensus 13 ~~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~------~~~f~~l~a~~- 85 (447)
T 3pvs_A 13 FQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA------NADVERISAVT- 85 (447)
T ss_dssp -CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT------TCEEEEEETTT-
T ss_pred cCChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh------CCCeEEEEecc-
Confidence 36999999999999999999999 899999999998889999999999999999999998 66788888765
Q ss_pred cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEec--Ccccccchhh
Q 019145 125 RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC--NYISRIIEPL 202 (345)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~--n~~~~l~~~l 202 (345)
.+...++..+........ .+...+|||||+|.++...++.|+..+++ ..+.+|+++ |....+.+++
T Consensus 86 ~~~~~ir~~~~~a~~~~~----------~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 86 SGVKEIREAIERARQNRN----------AGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSAL 153 (447)
T ss_dssp CCHHHHHHHHHHHHHHHH----------TTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHH
T ss_pred CCHHHHHHHHHHHHHhhh----------cCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHH
Confidence 455666666655443321 13467999999999999999999999997 345666665 5556789999
Q ss_pred hccceeEEecCCCHHHHHHHHHHHHHH-------hCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhC------CCCC
Q 019145 203 ASRCAKFRFKPLSEEVMSSRVLHICNE-------EGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFG------SSIT 269 (345)
Q Consensus 203 ~~r~~~i~~~~~~~~~~~~~l~~~~~~-------~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~------~~it 269 (345)
.+||.++.|.+++.+++..++...+.. .++.+++++++.|++.++||+|.+++.|+.++..+. ..||
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It 233 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLK 233 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECC
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccC
Confidence 999999999999999999999999886 557799999999999999999999999999998874 2599
Q ss_pred HHHHHHhhCCCC----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 019145 270 SKDLISVSGVIP----------PEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVL 328 (345)
Q Consensus 270 ~~~v~~~~~~~~----------~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~ 328 (345)
.++|.++++... ++.++.+++++.+++.++|+..+.+|++.|++|..|++.|.+....-
T Consensus 234 ~e~v~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~ed 302 (447)
T 3pvs_A 234 PELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASED 302 (447)
T ss_dssp HHHHHHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 999999998753 46788999999999999999999999999999999999998877654
No 9
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=2.9e-34 Score=259.09 Aligned_cols=276 Identities=30% Similarity=0.481 Sum_probs=211.6
Q ss_pred hhhhhhCCCCCccccccHHHHHHHHHHH-HcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCC----------------
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTL-ETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELY---------------- 112 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l-~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~---------------- 112 (345)
||++||+|.+|++++|++.++..+..++ ..+..++++|+||+|+||||+++++++++.++...
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~ 82 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRK 82 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------------
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccccc
Confidence 7999999999999999999999999999 87877789999999999999999999987554321
Q ss_pred -------CCceeeeecCCccchH--HHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC
Q 019145 113 -------KSRVLELNASDDRGIN--VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS 183 (345)
Q Consensus 113 -------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~ 183 (345)
...++++++.+..... .+++.+..+.................++++++|||++.++...++.|++.+++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 83 LELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYS 162 (354)
T ss_dssp ---CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHST
T ss_pred ceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhc
Confidence 1123445443321111 2444444432211000000000013467899999999999999999999999988
Q ss_pred CceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019145 184 KVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLD-AEALSTLSSISQGDLRRAITYLQGAAR 262 (345)
Q Consensus 184 ~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~-~~~~~~l~~~s~g~~r~~~~~l~~~~~ 262 (345)
.++.+|++|+....+.+++.+||..+.|++++.+++.+++..+++++|+.++ +++++.+++.++||+|.+++.++.++.
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~~~~~ 242 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMAL 242 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999 999999999999999999999999987
Q ss_pred HhCCCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCH----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 019145 263 LFGSSITSKDLISVSGVIPPEVVEGLFAVCRSGDF----DLANKEVNNIIAEGYPASLLLSQVTLLLFV 327 (345)
Q Consensus 263 ~~~~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~----~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~ 327 (345)
+.+..||.+++ +........++++++++..++. ..+...+.+++..|+++..|+..+..++.+
T Consensus 243 ~~~~~i~~~~~--~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~ 309 (354)
T 1sxj_E 243 NNELALKSSSP--IIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLD 309 (354)
T ss_dssp TTTTEECSSCC--CCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTTT
T ss_pred hCCCCcCcCcC--CCCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 76546776654 2223334678999999987543 445556677788999999999888776554
No 10
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.97 E-value=7.9e-30 Score=214.74 Aligned_cols=223 Identities=52% Similarity=0.880 Sum_probs=190.0
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (345)
...||.++|+|..|++++|++..+..+..++..+..++++|+||+|||||++++.+++.+.+. .....++.+++....+
T Consensus 3 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~ 81 (226)
T 2chg_A 3 NFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE-NWRDNFIEMNASDERG 81 (226)
T ss_dssp -CCCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGG-GGGGGEEEEETTCTTC
T ss_pred chhhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhcc-ccccceEEeccccccC
Confidence 456899999999999999999999999999999887789999999999999999999987432 2245677788877666
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccc
Q 019145 127 INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRC 206 (345)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~ 206 (345)
...+...+..+..... .....+.+|+|||++.+....++.|+.+++..+..+.+|+++|....+.+++.+|+
T Consensus 82 ~~~~~~~~~~~~~~~~--------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~ 153 (226)
T 2chg_A 82 IDVVRHKIKEFARTAP--------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (226)
T ss_dssp HHHHHHHHHHHHTSCC--------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred hHHHHHHHHHHhcccC--------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhC
Confidence 5555555444332210 11235679999999999999999999999998888899999999999999999999
Q ss_pred eeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCCCHHHHHHhhCC
Q 019145 207 AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGV 279 (345)
Q Consensus 207 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~it~~~v~~~~~~ 279 (345)
..+.|++++.+++..++..++...+..+++++++.+++.++||+|.+++.++.++..+ +.||.++|+++++.
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~-~~I~~~~v~~~~~~ 225 (226)
T 2chg_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG-EVVDADTIYQITAT 225 (226)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SCBCHHHHHHHHHT
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-ceecHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999998765 67999999988753
No 11
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.97 E-value=8.9e-30 Score=223.06 Aligned_cols=241 Identities=17% Similarity=0.151 Sum_probs=191.8
Q ss_pred ccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC-ccchHHHHHHHHHHHHhhhc
Q 019145 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD-DRGINVVRTKIKTFAAVAVG 143 (345)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 143 (345)
||+++++.|.+.++.+..+++||+||||+|||++++++++.+........++.++++.+ ..+.+.+++.+..+...+
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p-- 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSP-- 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCC--
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhcc--
Confidence 68889999999999988667899999999999999999986421111345778888764 577778888776654322
Q ss_pred CCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhccceeEEecCCCHHHHHHHH
Q 019145 144 SGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRV 223 (345)
Q Consensus 144 ~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l 223 (345)
..++++|+||||+|.++...++.|++++|++++++.+|++|+.+.++.+++++| ++.|.+++.+++.+|+
T Consensus 79 --------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l~~~~i~~~L 148 (305)
T 2gno_A 79 --------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR--VFRVVVNVPKEFRDLV 148 (305)
T ss_dssp --------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCHHHHHHH
T ss_pred --------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce--eEeCCCCCHHHHHHHH
Confidence 234678999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHH-------hCCCCCHHHHHHhhCCCCHH--HHHHHHHHHHc
Q 019145 224 LHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL-------FGSSITSKDLISVSGVIPPE--VVEGLFAVCRS 294 (345)
Q Consensus 224 ~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~-------~~~~it~~~v~~~~~~~~~~--~~~~l~~~~~~ 294 (345)
...+ + ++++++ +.+.||+|.+++.++..... ...--+.++|.++++...+. .+|++++++.+
T Consensus 149 ~~~~---~--i~~~~~----~~~~g~~~~al~~l~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~~~v~~l~~ai~~ 219 (305)
T 2gno_A 149 KEKI---G--DLWEEL----PLLERDFKTALEAYKLGAEKLSGLMESLKVLETEKLLKKVLSKGLEGYLACRELLERFSK 219 (305)
T ss_dssp HHHH---T--THHHHC----GGGGTCHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTTCSHHHHHHHHHHHHHHHHH
T ss_pred HHHh---C--CCHHHH----HHHCCCHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHccCCcchHHHHHHHHHHHC
Confidence 9887 3 566665 55799999999888632211 01111467888888877754 89999999999
Q ss_pred CCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHH
Q 019145 295 GDFDLANKEVNNIIA--EGYPASLLLSQVTLLLF 326 (345)
Q Consensus 295 ~~~~~a~~~l~~l~~--~g~~~~~i~~~l~~~~~ 326 (345)
++...|+..+.+|+. .|++|..++..+.+.+.
T Consensus 220 ~~~~~a~~~~~~l~~~~~g~~~~~~i~~~~r~l~ 253 (305)
T 2gno_A 220 VESKEFFALFDQVTNTITGKDAFLLIQRLTRIIL 253 (305)
T ss_dssp SCGGGHHHHHHHHHHHSCTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH
Confidence 999999999999998 89988666655555444
No 12
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=99.97 E-value=9.5e-30 Score=228.39 Aligned_cols=243 Identities=13% Similarity=0.073 Sum_probs=204.2
Q ss_pred HHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCC
Q 019145 73 LTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYP 152 (345)
Q Consensus 73 l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (345)
+.+.++....+.++|+||+|+||++.+..+++.+.+.++....++++++. ..+++.+......+..
T Consensus 9 l~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~plf--------- 74 (343)
T 1jr3_D 9 LRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN-----TDWNAIFSLCQAMSLF--------- 74 (343)
T ss_dssp HHHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTT-----CCHHHHHHHHHHHHHC---------
T ss_pred HHHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCC-----CCHHHHHHHhcCcCCc---------
Confidence 34445533344479999999999999999999886543222234444431 2334444443333322
Q ss_pred CCCeEEEEEcCCCC-CCHHHHHHHHHHHhhcCCceEEEEecCc------ccccchhhhccceeEEecCCCHHHHHHHHHH
Q 019145 153 CPPYKIIILDEADS-MTEDAQNALRRTMETYSKVTRFFFICNY------ISRIIEPLASRCAKFRFKPLSEEVMSSRVLH 225 (345)
Q Consensus 153 ~~~~~iliiDE~~~-l~~~~~~~l~~~le~~~~~~~ii~~~n~------~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~ 225 (345)
+++++++|||++. ++++.++.|+++++++++++.+|++++. ..++.+++.+||.++.|.+++.+++..|+..
T Consensus 75 -~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 75 -ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp -CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHH
T ss_pred -cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHH
Confidence 4678999999999 9999999999999999999999988865 3568899999999999999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh-CCCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHH
Q 019145 226 ICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEV 304 (345)
Q Consensus 226 ~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~-~~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l 304 (345)
+++++|+.+++++++.+++.++||+|.+.+++++++.+. ++.||.++|.++++......+|++++++.+++...++..+
T Consensus 154 ~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~~~~~if~l~~ai~~~d~~~al~~l 233 (343)
T 1jr3_D 154 RAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHIL 233 (343)
T ss_dssp HHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHCCCCHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999876 4579999999999888888999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHh
Q 019145 305 NNIIAEGYPASLLLSQVTLLLFVLMV 330 (345)
Q Consensus 305 ~~l~~~g~~~~~i~~~l~~~~~~~~~ 330 (345)
..+...|++|..|++.|.+++++++.
T Consensus 234 ~~l~~~g~~~~~il~~l~~~~r~l~~ 259 (343)
T 1jr3_D 234 QQLRLEGSEPVILLRTLQRELLLLVN 259 (343)
T ss_dssp TSSTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999864
No 13
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.96 E-value=3.7e-28 Score=207.34 Aligned_cols=222 Identities=26% Similarity=0.381 Sum_probs=180.4
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC-------------
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------- 112 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~~------------- 112 (345)
...+|.++|+|..|++++|++..+..+..++..+..++ ++|+||+|+|||++++.+++.+.+....
T Consensus 9 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (250)
T 1njg_A 9 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 88 (250)
T ss_dssp --CCHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHH
T ss_pred HHHHHhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 45689999999999999999999999999998877655 7999999999999999999988543211
Q ss_pred -----CCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceE
Q 019145 113 -----KSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTR 187 (345)
Q Consensus 113 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ 187 (345)
...++.++.........+...+..+.. .....++.+|+|||++.++...++.|++.+++.+..+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~ 158 (250)
T 1njg_A 89 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQY----------APARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK 158 (250)
T ss_dssp HHTTCCSSEEEEETTCGGGHHHHHHHHHSCCC----------SCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEE
T ss_pred HhccCCcceEEecCcccccHHHHHHHHHHhhh----------chhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceE
Confidence 012344444432233333322222110 01123567999999999999999999999998888889
Q ss_pred EEEecCcccccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Q 019145 188 FFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSS 267 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~~~~ 267 (345)
+|++++....+.+.+.+|+..+.|++++.+++.+++..++...+..+++++++.+++.++|++|.+.+.++.+..+..+.
T Consensus 159 ~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~~~ 238 (250)
T 1njg_A 159 FLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ 238 (250)
T ss_dssp EEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTTTSS
T ss_pred EEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCce
Confidence 99999988889999999999999999999999999999999999999999999999999999999999999998776678
Q ss_pred CCHHHHHHhhC
Q 019145 268 ITSKDLISVSG 278 (345)
Q Consensus 268 it~~~v~~~~~ 278 (345)
||.++|+++++
T Consensus 239 i~~~~v~~~~~ 249 (250)
T 1njg_A 239 VSTQAVSAMLG 249 (250)
T ss_dssp BCHHHHHHHSC
T ss_pred ecHHHHHHHhC
Confidence 99999998875
No 14
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.96 E-value=6.4e-28 Score=227.26 Aligned_cols=241 Identities=25% Similarity=0.367 Sum_probs=183.3
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHHc-----------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-----------------ANCPHMLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------------~~~~~lll~G~~G~GKT~la~~la~~l~~ 108 (345)
....+|+++|+|.+|++++|++..+..+..|+.. +..++++|+||||||||++|+++++++
T Consensus 24 ~~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-- 101 (516)
T 1sxj_A 24 ASDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-- 101 (516)
T ss_dssp --CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT--
T ss_pred ccCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc--
Confidence 4667899999999999999999999999999875 123569999999999999999999998
Q ss_pred CCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCC----CCCCCCCeEEEEEcCCCCCCHHH---HHHHHHHHhh
Q 019145 109 PELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRR----GGYPCPPYKIIILDEADSMTEDA---QNALRRTMET 181 (345)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~iliiDE~~~l~~~~---~~~l~~~le~ 181 (345)
+..++++++++......+...+........-..... .......+.+|+|||+|.++... .+.|.++++.
T Consensus 102 ----~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~ 177 (516)
T 1sxj_A 102 ----GYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK 177 (516)
T ss_dssp ----TCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH
T ss_pred ----CCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh
Confidence 678999999886665444333222111000000000 00122456899999999997643 4778888887
Q ss_pred cCCceEEEEecCccc-ccchhhhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 019145 182 YSKVTRFFFICNYIS-RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGA 260 (345)
Q Consensus 182 ~~~~~~ii~~~n~~~-~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~ 260 (345)
.. ..+|++++... ...+++.+||..+.|++|+.+++.+++..++..+++.++++++..|++.++||+|.+++.++.+
T Consensus 178 ~~--~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~~L~~~ 255 (516)
T 1sxj_A 178 TS--TPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTI 255 (516)
T ss_dssp CS--SCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHHTHH
T ss_pred cC--CCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 43 34666665432 3446788999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHhCCCCCHHHHHHhhC---CCCHHHHHHHHHHHHcC
Q 019145 261 ARLFGSSITSKDLISVSG---VIPPEVVEGLFAVCRSG 295 (345)
Q Consensus 261 ~~~~~~~it~~~v~~~~~---~~~~~~~~~l~~~~~~~ 295 (345)
+. .+..|+.+++.+++. ......+|++++.+..+
T Consensus 256 ~~-~~~~It~~~v~~~~~~~~~~~~~~~f~~~~~il~~ 292 (516)
T 1sxj_A 256 ST-TTKTINHENINEISKAWEKNIALKPFDIAHKMLDG 292 (516)
T ss_dssp HH-HSSCCCTTHHHHHHHHHHTTTTSHHHHHHHHHTBG
T ss_pred Hh-cCCCCchHHHHHHHHhhccCCCCCHHHHHHHHhcC
Confidence 74 456799999887765 44555788888888764
No 15
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.94 E-value=2.3e-26 Score=205.18 Aligned_cols=183 Identities=21% Similarity=0.296 Sum_probs=154.5
Q ss_pred cccHHHHHHHHHHHHcCCCCc-EEEeCCCCCCHHHHHHHHHHHhcCCCCC------------------CCceeeeecC--
Q 019145 64 AHQEEVVRVLTNTLETANCPH-MLFYGPPGTGKTTTALAIAHQLFGPELY------------------KSRVLELNAS-- 122 (345)
Q Consensus 64 ~g~~~~~~~l~~~l~~~~~~~-lll~G~~G~GKT~la~~la~~l~~~~~~------------------~~~~~~~~~~-- 122 (345)
.-+++.++.+...+..++.++ ++|+||+|+|||++|+++++.+.|.... ..++..+++.
T Consensus 5 pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~ 84 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG 84 (334)
T ss_dssp GGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT
T ss_pred CchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc
Confidence 346778889999999998888 7999999999999999999999876432 1456667664
Q ss_pred -CccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchh
Q 019145 123 -DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEP 201 (345)
Q Consensus 123 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~ 201 (345)
...+.+.+++.+..+... +..++++|+||||+|.++.+.++.|++.+|+++.++.+|++++.+.++.++
T Consensus 85 ~~~~~i~~ir~l~~~~~~~----------~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~t 154 (334)
T 1a5t_A 85 KNTLGVDAVREVTEKLNEH----------ARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLAT 154 (334)
T ss_dssp CSSBCHHHHHHHHHHTTSC----------CTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHH
T ss_pred CCCCCHHHHHHHHHHHhhc----------cccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHH
Confidence 345666777666554322 123467899999999999999999999999999999999999999999999
Q ss_pred hhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 019145 202 LASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAA 261 (345)
Q Consensus 202 l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~ 261 (345)
+++||..+.|++++.+++.+++...+ .++++++..+++.++||+|.+++.++...
T Consensus 155 i~SRc~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~~l~~~~ 209 (334)
T 1a5t_A 155 LRSRCRLHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALALFQGDN 209 (334)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHHTTSSHH
T ss_pred HhhcceeeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHHHhccch
Confidence 99999999999999999999997664 67899999999999999999999997665
No 16
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.94 E-value=1.2e-25 Score=201.40 Aligned_cols=209 Identities=18% Similarity=0.219 Sum_probs=168.2
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHc-----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeec
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 121 (345)
....|.++|+|.+|++++|++..+..+..++.. ...++++|+||||||||++|+++++.+ +..++.+++
T Consensus 15 ~~~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~------~~~~~~~~~ 88 (338)
T 3pfi_A 15 FDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM------SANIKTTAA 88 (338)
T ss_dssp --------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT------TCCEEEEEG
T ss_pred hhhhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh------CCCeEEecc
Confidence 445799999999999999999999999888864 344579999999999999999999997 667888887
Q ss_pred CCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCC-----------------
Q 019145 122 SDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK----------------- 184 (345)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~----------------- 184 (345)
........+...+.. .+...+|+|||++.++...++.|++.+++...
T Consensus 89 ~~~~~~~~~~~~~~~----------------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T 3pfi_A 89 PMIEKSGDLAAILTN----------------LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDL 152 (338)
T ss_dssp GGCCSHHHHHHHHHT----------------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCC
T ss_pred hhccchhHHHHHHHh----------------ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCC
Confidence 654443333333222 12446999999999999999999999987431
Q ss_pred -ceEEEEecCcccccchhhhccc-eeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 019145 185 -VTRFFFICNYISRIIEPLASRC-AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAAR 262 (345)
Q Consensus 185 -~~~ii~~~n~~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~ 262 (345)
.+.+|.++|....+.+++.+|+ ..+.|++|+.+++..++...+...++.+++++++.+++.++||+|.+.+.++.+..
T Consensus 153 ~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~ 232 (338)
T 3pfi_A 153 PKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRD 232 (338)
T ss_dssp CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2678889999999999999999 58999999999999999999999999999999999999999999999999998754
Q ss_pred Hh----CCCCCHHHHHHhh
Q 019145 263 LF----GSSITSKDLISVS 277 (345)
Q Consensus 263 ~~----~~~it~~~v~~~~ 277 (345)
.+ +..|+.+++..++
T Consensus 233 ~a~~~~~~~i~~~~~~~~~ 251 (338)
T 3pfi_A 233 FADVNDEEIITEKRANEAL 251 (338)
T ss_dssp HHHHTTCSEECHHHHHHHH
T ss_pred HHHhhcCCccCHHHHHHHH
Confidence 43 4559999887665
No 17
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.93 E-value=2.2e-24 Score=195.41 Aligned_cols=224 Identities=21% Similarity=0.265 Sum_probs=167.5
Q ss_pred cCcchhhhhhCCCC-CccccccHHHHHH---HHHHHHcCCCC--cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeee
Q 019145 46 QSSQPWVEKYRPKQ-VKDVAHQEEVVRV---LTNTLETANCP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (345)
Q Consensus 46 ~~~~~~~~~~~p~~-~~~~~g~~~~~~~---l~~~l~~~~~~--~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 119 (345)
....++.++++|.. |++++|++..+.. +...+..+..+ +++|+||||||||++|+++++.+.+ ..+++.+
T Consensus 28 ~~~l~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~----~~~~~~~ 103 (368)
T 3uk6_A 28 IRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP----DTPFTAI 103 (368)
T ss_dssp CCSCCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS----SCCEEEE
T ss_pred hhccCcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc----cCCcccc
Confidence 45567788999998 9999999888765 55666666654 6999999999999999999999843 2244444
Q ss_pred ecCCcc--------------------------------------------------c-----hHHHHHHHHHHHHhhhcC
Q 019145 120 NASDDR--------------------------------------------------G-----INVVRTKIKTFAAVAVGS 144 (345)
Q Consensus 120 ~~~~~~--------------------------------------------------~-----~~~~~~~~~~~~~~~~~~ 144 (345)
++.... + ...++..+..........
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 183 (368)
T 3uk6_A 104 AGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREE 183 (368)
T ss_dssp EGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhh
Confidence 432100 0 122222222222111100
Q ss_pred CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecC------------cccccchhhhccceeEEec
Q 019145 145 GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN------------YISRIIEPLASRCAKFRFK 212 (345)
Q Consensus 145 ~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n------------~~~~l~~~l~~r~~~i~~~ 212 (345)
+ .....+.+|||||++.++.+.++.|++.+++....+ ++++++ .+..+++++.+||..+.|+
T Consensus 184 g-----~~~~~~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~ 257 (368)
T 3uk6_A 184 G-----KAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPV-LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTT 257 (368)
T ss_dssp T-----C---CBCEEEEESGGGSBHHHHHHHHHHTTCTTCCE-EEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEEC
T ss_pred c-----cccccCceEEEhhccccChHHHHHHHHHhhCcCCCe-eeeecccceeeeeccCCCCcccCCHHHHhhccEEEec
Confidence 0 000113599999999999999999999999876654 344443 3567889999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHh----CCCCCHHHHHHhhCC
Q 019145 213 PLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQ-GDLRRAITYLQGAARLF----GSSITSKDLISVSGV 279 (345)
Q Consensus 213 ~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~-g~~r~~~~~l~~~~~~~----~~~it~~~v~~~~~~ 279 (345)
+|+.+++..+++.++...++.+++++++.+++.+. ||+|.+++.++.++..+ ...||.++|.+++..
T Consensus 258 ~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 258 PYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999998 99999999999887665 357999999988764
No 18
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.93 E-value=2.6e-24 Score=191.50 Aligned_cols=206 Identities=22% Similarity=0.270 Sum_probs=166.9
Q ss_pred hhhhhCCCCCccccccHHHHHHHHHHHHc-----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc
Q 019145 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLET-----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (345)
Q Consensus 51 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (345)
+.++|+|.+|++++|++..+..+..++.. ....+++|+||||||||++|+++++.+ +..++.+++....
T Consensus 2 ~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~------~~~~~~~~~~~~~ 75 (324)
T 1hqc_A 2 EDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL------GVNLRVTSGPAIE 75 (324)
T ss_dssp ---CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH------TCCEEEECTTTCC
T ss_pred CccccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh------CCCEEEEeccccC
Confidence 45789999999999999999888887753 344579999999999999999999998 5667777776654
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC------------------CceE
Q 019145 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS------------------KVTR 187 (345)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~------------------~~~~ 187 (345)
....+...+.. ..+...+|+|||++.++...++.|+..+++.. ..+.
T Consensus 76 ~~~~l~~~l~~---------------~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (324)
T 1hqc_A 76 KPGDLAAILAN---------------SLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFT 140 (324)
T ss_dssp SHHHHHHHHTT---------------TCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCE
T ss_pred ChHHHHHHHHH---------------hccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEE
Confidence 43333222111 01244699999999999999999999998743 2467
Q ss_pred EEEecCcccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh--
Q 019145 188 FFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-- 264 (345)
Q Consensus 188 ii~~~n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~-- 264 (345)
+|+++|....+.+++.+|+. ++.|++|+.+++..++...+...+..+++++++.++++++|++|.+.+.++.+...+
T Consensus 141 ~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~ 220 (324)
T 1hqc_A 141 LIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQV 220 (324)
T ss_dssp EEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTT
T ss_pred EEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 88889988889999999995 899999999999999999999889999999999999999999999999998887554
Q ss_pred --CCCCCHHHHHHhh
Q 019145 265 --GSSITSKDLISVS 277 (345)
Q Consensus 265 --~~~it~~~v~~~~ 277 (345)
...|+.+++..+.
T Consensus 221 ~~~~~i~~~~~~~~~ 235 (324)
T 1hqc_A 221 AGEEVITRERALEAL 235 (324)
T ss_dssp TSCSCCCHHHHHHHH
T ss_pred hcCCCCCHHHHHHHH
Confidence 3469998887654
No 19
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.92 E-value=6.7e-23 Score=182.78 Aligned_cols=214 Identities=19% Similarity=0.261 Sum_probs=161.0
Q ss_pred ccccCcchhhhhhCCCCCccccccHHHHHHHHHHHHcC-----CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcee
Q 019145 43 PVLQSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETA-----NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (345)
Q Consensus 43 ~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~-----~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 117 (345)
++..-.+.|.++++|.+|++++|++.++..+...+..+ ...+++|+||||+||||+++++++.+ +..+.
T Consensus 7 ~~~~~~~~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l------~~~~~ 80 (334)
T 1in4_A 7 PERTVYDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL------QTNIH 80 (334)
T ss_dssp ----------CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH------TCCEE
T ss_pred cchHHHHHHHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh------CCCEE
Confidence 33345567899999999999999999998888877643 34569999999999999999999998 33444
Q ss_pred eeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC--------------
Q 019145 118 ELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------- 183 (345)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-------------- 183 (345)
..++........+....... ...++++|||++.+.+...+.|+..++...
T Consensus 81 ~~sg~~~~~~~~l~~~~~~~----------------~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i 144 (334)
T 1in4_A 81 VTSGPVLVKQGDMAAILTSL----------------ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSI 144 (334)
T ss_dssp EEETTTCCSHHHHHHHHHHC----------------CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC-----------
T ss_pred EEechHhcCHHHHHHHHHHc----------------cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccc
Confidence 44444322222222221110 133599999999999888888887776532
Q ss_pred ----CceEEEEecCcccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 019145 184 ----KVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258 (345)
Q Consensus 184 ----~~~~ii~~~n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~ 258 (345)
..+.++.+++.+..+.+.+++||. .+.|++++.+++.+++++.++..++.++++++..|++.+.|++|.+.+.|+
T Consensus 145 ~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~ 224 (334)
T 1in4_A 145 RIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTK 224 (334)
T ss_dssp ----CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred cccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHH
Confidence 124556677888899999999997 689999999999999999999889999999999999999999999999998
Q ss_pred HHHHHh----CCCCCHHHHHHhhC
Q 019145 259 GAARLF----GSSITSKDLISVSG 278 (345)
Q Consensus 259 ~~~~~~----~~~it~~~v~~~~~ 278 (345)
.+..++ .+.||.+++.+++.
T Consensus 225 ~~~~~a~~~~~~~It~~~v~~al~ 248 (334)
T 1in4_A 225 RVRDMLTVVKADRINTDIVLKTME 248 (334)
T ss_dssp HHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHH
Confidence 776554 35699999988764
No 20
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.91 E-value=1.1e-23 Score=179.29 Aligned_cols=211 Identities=12% Similarity=0.166 Sum_probs=163.2
Q ss_pred CcchhhhhhCC-CCCccccc---cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 47 SSQPWVEKYRP-KQVKDVAH---QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 47 ~~~~~~~~~~p-~~~~~~~g---~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
...+|..+++| .+|+++++ +...+..+..++..+...+++|+||||||||++++++++.+... +..+..+++.
T Consensus 13 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~---~~~~~~~~~~ 89 (242)
T 3bos_A 13 LQLSLPVHLPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL---ERRSFYIPLG 89 (242)
T ss_dssp CCCEEECCCCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEGG
T ss_pred hhcCCCCCCCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHH
Confidence 34578889998 79999996 36788889988887777789999999999999999999988433 3455556554
Q ss_pred CccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHH--HHHHHHHHhhcCC--ceEEEEecCccc--
Q 019145 123 DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA--QNALRRTMETYSK--VTRFFFICNYIS-- 196 (345)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~--~~~l~~~le~~~~--~~~ii~~~n~~~-- 196 (345)
+.... +...+. ......+|+|||++.+.... ++.|+.+++.... ...+|++++...
T Consensus 90 ~~~~~--~~~~~~----------------~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~ 151 (242)
T 3bos_A 90 IHASI--STALLE----------------GLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPME 151 (242)
T ss_dssp GGGGS--CGGGGT----------------TGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTT
T ss_pred HHHHH--HHHHHH----------------hccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHH
Confidence 32110 000110 01234699999999997654 7778888775432 224777776433
Q ss_pred --ccchhhhccc---eeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh---CCCC
Q 019145 197 --RIIEPLASRC---AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSI 268 (345)
Q Consensus 197 --~l~~~l~~r~---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~---~~~i 268 (345)
...+.+.+|+ ..+.|++|+.+++..++..++...++.+++++++.+++.++||+|.+.+.++.+..++ +..|
T Consensus 152 ~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~~I 231 (242)
T 3bos_A 152 AGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQRKL 231 (242)
T ss_dssp TTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 3558899999 7999999999999999999999999999999999999999999999999999888765 6679
Q ss_pred CHHHHHHhhC
Q 019145 269 TSKDLISVSG 278 (345)
Q Consensus 269 t~~~v~~~~~ 278 (345)
|.++|.+++.
T Consensus 232 t~~~v~~~l~ 241 (242)
T 3bos_A 232 TIPFVKEMLR 241 (242)
T ss_dssp CHHHHHHHHT
T ss_pred cHHHHHHHhh
Confidence 9999988764
No 21
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.91 E-value=1.2e-22 Score=188.45 Aligned_cols=123 Identities=23% Similarity=0.286 Sum_probs=109.7
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEec---------Cc----ccccchhhhccceeEEecCCCHHHHHHHH
Q 019145 157 KIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC---------NY----ISRIIEPLASRCAKFRFKPLSEEVMSSRV 223 (345)
Q Consensus 157 ~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~---------n~----~~~l~~~l~~r~~~i~~~~~~~~~~~~~l 223 (345)
+|+||||++.++.+.++.|++.+|+++.. .+|+.+ .. +..+++++++||..+.|++++.+++.++|
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 59999999999999999999999998877 566666 33 67789999999999999999999999999
Q ss_pred HHHHHHhCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHh---C-CCCCHHHHHHhhCCC
Q 019145 224 LHICNEEGLNLDAEALSTLSSIS-QGDLRRAITYLQGAARLF---G-SSITSKDLISVSGVI 280 (345)
Q Consensus 224 ~~~~~~~~~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~---~-~~it~~~v~~~~~~~ 280 (345)
+.++..+++.++++++..++..+ .|++|.+++.++.+..++ + ..|+.++|.++.+..
T Consensus 376 ~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 376 KIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELF 437 (456)
T ss_dssp HHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred HHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHh
Confidence 99999999999999999999999 999999999999875554 3 569999999987654
No 22
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.89 E-value=1.5e-21 Score=177.84 Aligned_cols=192 Identities=20% Similarity=0.244 Sum_probs=149.5
Q ss_pred hhhhhhCCCCCccccccHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcee
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 117 (345)
.|.++++|.+|++++|++.+++.+..++.. ....++||+||||||||++|+++++++ +..++
T Consensus 104 ~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~------~~~~~ 177 (389)
T 3vfd_A 104 EIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES------NATFF 177 (389)
T ss_dssp TTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT------TCEEE
T ss_pred hhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh------cCcEE
Confidence 588899999999999999999999888732 224569999999999999999999997 67888
Q ss_pred eeecCCccch------HHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHh
Q 019145 118 ELNASDDRGI------NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTME 180 (345)
Q Consensus 118 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le 180 (345)
.+++....+. ..+...+..... ....+|||||+|.+. ...++.|+..++
T Consensus 178 ~v~~~~l~~~~~g~~~~~~~~~~~~a~~--------------~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~ 243 (389)
T 3vfd_A 178 NISAASLTSKYVGEGEKLVRALFAVARE--------------LQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFD 243 (389)
T ss_dssp EECSCCC-------CHHHHHHHHHHHHH--------------SSSEEEEEETGGGGC--------CTHHHHHHHHHHHHH
T ss_pred EeeHHHhhccccchHHHHHHHHHHHHHh--------------cCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhh
Confidence 8888764332 112222222211 123699999999882 345567777776
Q ss_pred hc----CCceEEEEecCcccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHH
Q 019145 181 TY----SKVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAIT 255 (345)
Q Consensus 181 ~~----~~~~~ii~~~n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~ 255 (345)
.. +..+.+|.++|.+..+.+++.+||. .+.|+.|+.++...++..++...+..++++.+..+++.+.|..+..++
T Consensus 244 ~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~ 323 (389)
T 3vfd_A 244 GVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLT 323 (389)
T ss_dssp HHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHH
T ss_pred cccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHH
Confidence 43 3457788899999999999999997 799999999999999999999999999999999999999998886666
Q ss_pred HHHHHH
Q 019145 256 YLQGAA 261 (345)
Q Consensus 256 ~l~~~~ 261 (345)
.|...+
T Consensus 324 ~L~~~a 329 (389)
T 3vfd_A 324 ALAKDA 329 (389)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 664433
No 23
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.89 E-value=4.1e-21 Score=168.73 Aligned_cols=212 Identities=24% Similarity=0.249 Sum_probs=158.8
Q ss_pred hhhhhhCCCCCccccccHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcee
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 117 (345)
.|.+++.|.+|++++|++.+++.+..++.. ....+++|+||||||||++|+++++.+ +..++
T Consensus 10 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~------~~~~~ 83 (297)
T 3b9p_A 10 EIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC------SATFL 83 (297)
T ss_dssp TTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT------TCEEE
T ss_pred HhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh------CCCeE
Confidence 366788899999999999999999887743 234569999999999999999999998 56778
Q ss_pred eeecCCccc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHh
Q 019145 118 ELNASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTME 180 (345)
Q Consensus 118 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le 180 (345)
.+++....+ ....+..+..... ....+|+|||++.+. ...++.|+..++
T Consensus 84 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~--------------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~ 149 (297)
T 3b9p_A 84 NISAASLTSKYVGDGEKLVRALFAVARH--------------MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFD 149 (297)
T ss_dssp EEESTTTSSSSCSCHHHHHHHHHHHHHH--------------TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHH
T ss_pred EeeHHHHhhcccchHHHHHHHHHHHHHH--------------cCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHh
Confidence 888765322 1222222222211 134699999998873 345667888887
Q ss_pred hcC-----CceEEEEecCcccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHH
Q 019145 181 TYS-----KVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAI 254 (345)
Q Consensus 181 ~~~-----~~~~ii~~~n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~ 254 (345)
..+ ..+.+|.+||.+..+.+++.+||. .+.+++|+.++...++..++...+..++++.+..+++.+.|..+..+
T Consensus 150 ~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l 229 (297)
T 3b9p_A 150 GLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDL 229 (297)
T ss_dssp HCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHH
T ss_pred cccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHH
Confidence 654 346788889999999999999996 78999999999999999999888888999999999999999887655
Q ss_pred HHH-HHHHHHh----------------CCCCCHHHHHHhhCCCC
Q 019145 255 TYL-QGAARLF----------------GSSITSKDLISVSGVIP 281 (345)
Q Consensus 255 ~~l-~~~~~~~----------------~~~it~~~v~~~~~~~~ 281 (345)
..+ +.++..+ ...|+.+|+..++....
T Consensus 230 ~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 273 (297)
T 3b9p_A 230 TALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIR 273 (297)
T ss_dssp HHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcC
Confidence 444 4433222 13478888877766543
No 24
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.88 E-value=1.9e-21 Score=177.09 Aligned_cols=275 Identities=19% Similarity=0.187 Sum_probs=182.7
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHc----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCC---CCCCCceeee
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET----ANCPHMLFYGPPGTGKTTTALAIAHQLFGP---ELYKSRVLEL 119 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~----~~~~~lll~G~~G~GKT~la~~la~~l~~~---~~~~~~~~~~ 119 (345)
...+|..+|.| ++++|++..+..+..++.. +...+++|+||||||||++++.+++.+... ...+..++.+
T Consensus 8 ~~~~l~~~~~p---~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i 84 (387)
T 2v1u_A 8 KRWVLLPDYVP---DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYV 84 (387)
T ss_dssp CHHHHSTTCCC---SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CHHhcCCccCC---CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEE
Confidence 34466677777 6789999999999988854 445679999999999999999999987321 0124677888
Q ss_pred ecCCccchHHH-HHHHHHHHHhhhcCCCCC---------CCCCCCCeEEEEEcCCCCCCHH--HHHHHHHHHhhc-----
Q 019145 120 NASDDRGINVV-RTKIKTFAAVAVGSGQRR---------GGYPCPPYKIIILDEADSMTED--AQNALRRTMETY----- 182 (345)
Q Consensus 120 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~iliiDE~~~l~~~--~~~~l~~~le~~----- 182 (345)
++....+...+ ...+..+.......+... .....+.+.+|+|||++.+... .++.|..+++..
T Consensus 85 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~ 164 (387)
T 2v1u_A 85 NARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGD 164 (387)
T ss_dssp ETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC--
T ss_pred ECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCC
Confidence 87664433222 111111100000000000 0001234679999999999765 667776666543
Q ss_pred CCceEEEEecCcc---cccchhhhccc--eeEEecCCCHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHhcC---CCHHH
Q 019145 183 SKVTRFFFICNYI---SRIIEPLASRC--AKFRFKPLSEEVMSSRVLHICNE--EGLNLDAEALSTLSSISQ---GDLRR 252 (345)
Q Consensus 183 ~~~~~ii~~~n~~---~~l~~~l~~r~--~~i~~~~~~~~~~~~~l~~~~~~--~~~~i~~~~~~~l~~~s~---g~~r~ 252 (345)
...+.+|+++|.. ..+.+.+.+|+ ..+.|+|++.+++..++..++.. .+..+++++++.+++.++ ||+|.
T Consensus 165 ~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~ 244 (387)
T 2v1u_A 165 RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARR 244 (387)
T ss_dssp ---CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHH
T ss_pred CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHH
Confidence 4567788888876 67888999999 58999999999999999999876 456789999999999998 99999
Q ss_pred HHHHHHHHHHHh---C-CCCCHHHHHHhhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHH
Q 019145 253 AITYLQGAARLF---G-SSITSKDLISVSGVIPPEVVEGLFAVCRSGDFDLANKEVNNI-IAEGYPASLLLSQVTLLLFV 327 (345)
Q Consensus 253 ~~~~l~~~~~~~---~-~~it~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l-~~~g~~~~~i~~~l~~~~~~ 327 (345)
+++.++.++..+ + ..|+.+++.+++..... ..+.+.+.+-+......++.-+ ...|.++ .....+.+.+..
T Consensus 245 ~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~---~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~-~~~~~~~~~~~~ 320 (387)
T 2v1u_A 245 ALDLLRVAGEIAERRREERVRREHVYSARAEIER---DRVSEVVRTLPLHAKLVLLSIMMLEDGGRP-ASTGEIYERYKE 320 (387)
T ss_dssp HHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH---HHHHHHHHSSCHHHHHHHHHHHHHSSSSCC-EEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh---chHHHHHHcCCHHHHHHHHHHHHHhcCCCC-CcHHHHHHHHHH
Confidence 999999887665 2 56999999988765422 2345556666665544443333 1225442 223444444444
Q ss_pred H
Q 019145 328 L 328 (345)
Q Consensus 328 ~ 328 (345)
+
T Consensus 321 ~ 321 (387)
T 2v1u_A 321 L 321 (387)
T ss_dssp H
T ss_pred H
Confidence 4
No 25
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.88 E-value=5.8e-21 Score=174.08 Aligned_cols=229 Identities=18% Similarity=0.223 Sum_probs=166.4
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHHc----CCCC--cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeee
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET----ANCP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~----~~~~--~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 119 (345)
....+|..+|.| ++++|++..+..+..++.. .... +++|+||+|+|||++++.+++.+.... +..++.+
T Consensus 5 ~~~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~i 79 (389)
T 1fnn_A 5 VDDSVFSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT--TARFVYI 79 (389)
T ss_dssp SCGGGGSTTCCC---SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC--CCEEEEE
T ss_pred cCHhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc--CeeEEEE
Confidence 345578888888 6789999998888887765 3333 799999999999999999999984322 4567888
Q ss_pred ecCCccchHH-HHHHHHHHHHhhhcCCCCCCC---------CCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC----Cc
Q 019145 120 NASDDRGINV-VRTKIKTFAAVAVGSGQRRGG---------YPCPPYKIIILDEADSMTEDAQNALRRTMETYS----KV 185 (345)
Q Consensus 120 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~----~~ 185 (345)
++....+... +......+.......+..... .....+.+|+|||++.++...+..|..++++.+ ..
T Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~ 159 (389)
T 1fnn_A 80 NGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFR 159 (389)
T ss_dssp ETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCC
T ss_pred eCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCC
Confidence 8765443322 222222110000000000000 001245799999999999999999999997654 37
Q ss_pred eEEEEecCcc---cccchhhhccce--eEEecCCCHHHHHHHHHHHHHHh--CCCCCHHHHHHHHHhc---------CCC
Q 019145 186 TRFFFICNYI---SRIIEPLASRCA--KFRFKPLSEEVMSSRVLHICNEE--GLNLDAEALSTLSSIS---------QGD 249 (345)
Q Consensus 186 ~~ii~~~n~~---~~l~~~l~~r~~--~i~~~~~~~~~~~~~l~~~~~~~--~~~i~~~~~~~l~~~s---------~g~ 249 (345)
+.+|++++.. ..+.+.+.+|+. .+.|+|++.+++..++..++... ...+++++++.+++.+ +||
T Consensus 160 ~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~ 239 (389)
T 1fnn_A 160 IALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGD 239 (389)
T ss_dssp EEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCC
T ss_pred EEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCc
Confidence 7888888776 567788888887 79999999999999999998762 2468999999999999 899
Q ss_pred HHHHHHHHHHHHHHh----CCCCCHHHHHHhhCC
Q 019145 250 LRRAITYLQGAARLF----GSSITSKDLISVSGV 279 (345)
Q Consensus 250 ~r~~~~~l~~~~~~~----~~~it~~~v~~~~~~ 279 (345)
+|.+++.++.++..+ ...|+.+++..+...
T Consensus 240 ~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~ 273 (389)
T 1fnn_A 240 ARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKE 273 (389)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Confidence 999999999887654 256999998876543
No 26
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=6.3e-21 Score=170.34 Aligned_cols=200 Identities=21% Similarity=0.267 Sum_probs=144.4
Q ss_pred CCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (345)
..+|+|+.|.+++++.|++.+.- ..+..+|||||||||||++|+++|+++ +.+|+.+++++
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~------~~~f~~v~~s~ 217 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT------DCKFIRVSGAE 217 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH------TCEEEEEEGGG
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh------CCCceEEEhHH
Confidence 45899999999999988877632 233459999999999999999999999 78899888765
Q ss_pred cc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------------HHHHHHHHHHhhc-
Q 019145 124 DR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETY- 182 (345)
Q Consensus 124 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------------~~~~~l~~~le~~- 182 (345)
.. +...++..+...... .+.||||||+|.+.. ...+.|+..++..
T Consensus 218 l~sk~vGese~~vr~lF~~Ar~~--------------aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 218 LVQKYIGEGSRMVRELFVMAREH--------------APSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp GSCSSTTHHHHHHHHHHHHHHHT--------------CSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred hhccccchHHHHHHHHHHHHHHh--------------CCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 32 233445555444333 235999999998831 2355677777643
Q ss_pred -CCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcCC-CHHHHHHH
Q 019145 183 -SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQG-DLRRAITY 256 (345)
Q Consensus 183 -~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~~~s~g-~~r~~~~~ 256 (345)
...+.+|.+||.++.+++++++ |++ .++|+.|+.++..++++..++...+ +++ .++.|++.+.| +...+.+.
T Consensus 284 ~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l--~~dvdl~~lA~~t~G~SGADi~~l 361 (405)
T 4b4t_J 284 TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL--TRGINLRKVAEKMNGCSGADVKGV 361 (405)
T ss_dssp CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC--CSSCCHHHHHHHCCSCCHHHHHHH
T ss_pred CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC--CccCCHHHHHHHCCCCCHHHHHHH
Confidence 3467788899999999999998 777 8999999999999999888765443 333 37888888765 33333344
Q ss_pred HHHHHHHh----CCCCCHHHHHHhhC
Q 019145 257 LQGAARLF----GSSITSKDLISVSG 278 (345)
Q Consensus 257 l~~~~~~~----~~~it~~~v~~~~~ 278 (345)
+..++..+ ...|+.+|+..++.
T Consensus 362 ~~eA~~~Air~~~~~vt~~Df~~Al~ 387 (405)
T 4b4t_J 362 CTEAGMYALRERRIHVTQEDFELAVG 387 (405)
T ss_dssp HHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 44444333 23588888776643
No 27
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.87 E-value=8.9e-21 Score=170.22 Aligned_cols=192 Identities=19% Similarity=0.203 Sum_probs=140.4
Q ss_pred hhhhhhCCCCCccccccHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcee
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 117 (345)
.+..++.+.+|++++|++.+++.|..++.. ....++||+||||||||++|+++++++ +.+++
T Consensus 40 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~------~~~~~ 113 (355)
T 2qp9_X 40 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA------NSTFF 113 (355)
T ss_dssp -------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH------TCEEE
T ss_pred hhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh------CCCEE
Confidence 456678889999999999999999887731 123459999999999999999999998 66777
Q ss_pred eeecCCcc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH-----------HHHHHHHHHHh
Q 019145 118 ELNASDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTME 180 (345)
Q Consensus 118 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~-----------~~~~~l~~~le 180 (345)
.+++.+.. ....++..+..... ....+|||||+|.+.. ...+.|+..++
T Consensus 114 ~v~~~~l~~~~~g~~~~~~~~~f~~a~~--------------~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~ 179 (355)
T 2qp9_X 114 SVSSSDLVSKWMGESEKLVKQLFAMARE--------------NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMN 179 (355)
T ss_dssp EEEHHHHHSCC---CHHHHHHHHHHHHH--------------TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHH
T ss_pred EeeHHHHhhhhcchHHHHHHHHHHHHHH--------------cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhh
Confidence 77764311 11222222222211 1346999999999863 34677777777
Q ss_pred hc---CCceEEEEecCcccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHH
Q 019145 181 TY---SKVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAIT 255 (345)
Q Consensus 181 ~~---~~~~~ii~~~n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g-~~r~~~~ 255 (345)
.. ...+.+|.++|.+..+++++.+||. .+.+++|+.++...+++.++...+..+++..+..|++.+.| +.+.+.+
T Consensus 180 ~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~ 259 (355)
T 2qp9_X 180 GVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAV 259 (355)
T ss_dssp HCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHH
T ss_pred cccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 43 3567788899999999999999996 78999999999999999999887777899999999999987 4555555
Q ss_pred HHHHHH
Q 019145 256 YLQGAA 261 (345)
Q Consensus 256 ~l~~~~ 261 (345)
.+..++
T Consensus 260 l~~~A~ 265 (355)
T 2qp9_X 260 VVKDAL 265 (355)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555444
No 28
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.87 E-value=5.9e-21 Score=169.43 Aligned_cols=192 Identities=19% Similarity=0.204 Sum_probs=145.8
Q ss_pred hhhhhhCCCCCccccccHHHHHHHHHHHH----------cC--CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcee
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLE----------TA--NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~----------~~--~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 117 (345)
.|...+.+.+|++++|++.+++.+..++. .+ ...++||+||||||||++|+++++++ +.+++
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~------~~~~~ 80 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA------NSTFF 80 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH------TCEEE
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH------CCCEE
Confidence 46678888999999999999999988872 11 23459999999999999999999998 67788
Q ss_pred eeecCCccc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH-----------HHHHHHHHHHh
Q 019145 118 ELNASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTME 180 (345)
Q Consensus 118 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~-----------~~~~~l~~~le 180 (345)
.+++++..+ ...+...+..... ....+|+|||+|.+.. ..++.++..++
T Consensus 81 ~v~~~~l~~~~~g~~~~~~~~~f~~a~~--------------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~ 146 (322)
T 3eie_A 81 SVSSSDLVSKWMGESEKLVKQLFAMARE--------------NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMN 146 (322)
T ss_dssp EEEHHHHHTTTGGGHHHHHHHHHHHHHH--------------TSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHG
T ss_pred EEchHHHhhcccchHHHHHHHHHHHHHh--------------cCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhc
Confidence 887743211 1122222222211 1346999999998843 34677777776
Q ss_pred hc---CCceEEEEecCcccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHH
Q 019145 181 TY---SKVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAIT 255 (345)
Q Consensus 181 ~~---~~~~~ii~~~n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g-~~r~~~~ 255 (345)
.. ...+.+|.+||.+..+++++.+||. .+.|++|+.++...+++..+...+..++++.+..|++.+.| +.+.+.+
T Consensus 147 ~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~ 226 (322)
T 3eie_A 147 GVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAV 226 (322)
T ss_dssp GGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHH
T ss_pred cccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 43 4567788889999999999999996 78999999999999999999888888899999999999977 4555544
Q ss_pred HHHHHH
Q 019145 256 YLQGAA 261 (345)
Q Consensus 256 ~l~~~~ 261 (345)
.+..++
T Consensus 227 l~~~a~ 232 (322)
T 3eie_A 227 VVKDAL 232 (322)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 444443
No 29
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.86 E-value=1.5e-20 Score=161.55 Aligned_cols=207 Identities=18% Similarity=0.146 Sum_probs=151.2
Q ss_pred hhhhhhCCCCCccccccHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCcee
Q 019145 50 PWVEKYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVL 117 (345)
Q Consensus 50 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 117 (345)
.|.+++.+.+|++++|.+.+++.+...+.. ....+++|+||||||||++++++++.+ +.+++
T Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~------~~~~~ 74 (257)
T 1lv7_A 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA------KVPFF 74 (257)
T ss_dssp CEEECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH------TCCEE
T ss_pred CCCccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc------CCCEE
Confidence 377889999999999999998877665432 124469999999999999999999998 45677
Q ss_pred eeecCCccc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------------HHHHHHHH
Q 019145 118 ELNASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRR 177 (345)
Q Consensus 118 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------------~~~~~l~~ 177 (345)
.+++.+... ...+...+..... ....++++||+|.+.. ...+.++.
T Consensus 75 ~i~~~~~~~~~~~~~~~~~~~~~~~a~~--------------~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~ 140 (257)
T 1lv7_A 75 TISGSDFVEMFVGVGASRVRDMFEQAKK--------------AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLV 140 (257)
T ss_dssp EECSCSSTTSCCCCCHHHHHHHHHHHHT--------------TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHH
T ss_pred EEeHHHHHHHhhhhhHHHHHHHHHHHHH--------------cCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHH
Confidence 777654321 2223333333211 1236999999976532 34556666
Q ss_pred HHhhc--CCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhcCC-CH
Q 019145 178 TMETY--SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQG-DL 250 (345)
Q Consensus 178 ~le~~--~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~s~g-~~ 250 (345)
.++.. ...+.+|+++|.+..+++++.+ |+. .+.|++|+.++..++++.+++.. .+++++ +..++..+.| +.
T Consensus 141 ~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~--~l~~~~~~~~la~~~~G~~~ 218 (257)
T 1lv7_A 141 EMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV--PLAPDIDAAIIARGTPGFSG 218 (257)
T ss_dssp HHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS--CBCTTCCHHHHHHTCTTCCH
T ss_pred HhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcC--CCCccccHHHHHHHcCCCCH
Confidence 66643 3457788889999989999987 765 78999999999999998887654 344333 6788899999 99
Q ss_pred HHHHHHHHHHHHHh----CCCCCHHHHHHhhC
Q 019145 251 RRAITYLQGAARLF----GSSITSKDLISVSG 278 (345)
Q Consensus 251 r~~~~~l~~~~~~~----~~~it~~~v~~~~~ 278 (345)
|.+.+.+..++..+ ...|+.+++.+++.
T Consensus 219 ~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~ 250 (257)
T 1lv7_A 219 ADLANLVNEAALFAARGNKRVVSMVEFEKAKD 250 (257)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 99999888877654 25699999887654
No 30
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.86 E-value=1.8e-20 Score=168.59 Aligned_cols=191 Identities=18% Similarity=0.188 Sum_probs=144.5
Q ss_pred hhhhhCCCCCccccccHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceee
Q 019145 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE 118 (345)
Q Consensus 51 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~ 118 (345)
+.+++.|.+|++++|++.+++.+.+++.. ....+++|+||||||||++|+++++.+ +..++.
T Consensus 74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~------~~~~~~ 147 (357)
T 3d8b_A 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS------GATFFS 147 (357)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT------TCEEEE
T ss_pred cccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc------CCeEEE
Confidence 45677899999999999999999888742 334569999999999999999999998 667888
Q ss_pred eecCCccch------HHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHhh
Q 019145 119 LNASDDRGI------NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMET 181 (345)
Q Consensus 119 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le~ 181 (345)
+++.+.... ..+...+..... ....+|||||+|.+. ...++.++..++.
T Consensus 148 i~~~~l~~~~~g~~~~~~~~~~~~a~~--------------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~ 213 (357)
T 3d8b_A 148 ISASSLTSKWVGEGEKMVRALFAVARC--------------QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDG 213 (357)
T ss_dssp EEGGGGCCSSTTHHHHHHHHHHHHHHH--------------TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC
T ss_pred EehHHhhccccchHHHHHHHHHHHHHh--------------cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhc
Confidence 887643221 112222222111 134699999998773 2345667777764
Q ss_pred c----CCceEEEEecCcccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC-HHHHHH
Q 019145 182 Y----SKVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD-LRRAIT 255 (345)
Q Consensus 182 ~----~~~~~ii~~~n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~-~r~~~~ 255 (345)
. ...+.+|.+||.+..+.+++.+||. .+.++.|+.++...++...+...+..++++.+..+++.+.|. .+.+..
T Consensus 214 ~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~ 293 (357)
T 3d8b_A 214 ATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQ 293 (357)
T ss_dssp ----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHH
T ss_pred ccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHH
Confidence 2 3467788889999999999999997 789999999999999999999888889999999999999884 444444
Q ss_pred HHHHHH
Q 019145 256 YLQGAA 261 (345)
Q Consensus 256 ~l~~~~ 261 (345)
.+..++
T Consensus 294 l~~~a~ 299 (357)
T 3d8b_A 294 LCREAS 299 (357)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 31
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=3.9e-20 Score=165.66 Aligned_cols=203 Identities=19% Similarity=0.231 Sum_probs=143.6
Q ss_pred hhhCCCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeee
Q 019145 53 EKYRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (345)
Q Consensus 53 ~~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 119 (345)
++--..+|+++.|.+++++.|.+.+.. ..+..+|||||||||||++|+++|+++ +.+|+.+
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~------~~~fi~v 247 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT------SATFLRI 247 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH------TCEEEEE
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh------CCCEEEE
Confidence 344456999999999999888877632 223459999999999999999999999 7888888
Q ss_pred ecCCccc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------------HHHHHHHHHH
Q 019145 120 NASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTM 179 (345)
Q Consensus 120 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------------~~~~~l~~~l 179 (345)
++++..+ ...++..+...... .+.||+|||+|.+.. .....|+..+
T Consensus 248 ~~s~l~sk~vGesek~ir~lF~~Ar~~--------------aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~l 313 (437)
T 4b4t_I 248 VGSELIQKYLGDGPRLCRQIFKVAGEN--------------APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQL 313 (437)
T ss_dssp ESGGGCCSSSSHHHHHHHHHHHHHHHT--------------CSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHH
T ss_pred EHHHhhhccCchHHHHHHHHHHHHHhc--------------CCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHh
Confidence 8765322 23344444443332 235999999998731 2345566666
Q ss_pred hhc--CCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcCC-CHHH
Q 019145 180 ETY--SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQG-DLRR 252 (345)
Q Consensus 180 e~~--~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~~~s~g-~~r~ 252 (345)
+.. ...+.+|++||.++.+++++++ |++ .++|+.|+.++..++++..++... ++++ .++.|++.+.| +..+
T Consensus 314 Dg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~--l~~dvdl~~LA~~T~GfSGAD 391 (437)
T 4b4t_I 314 DGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN--LSEDVNLETLVTTKDDLSGAD 391 (437)
T ss_dssp HHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC--BCSCCCHHHHHHHCCSCCHHH
T ss_pred hCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC--CCCcCCHHHHHHhCCCCCHHH
Confidence 643 3467888999999999999998 777 799999999999999988876543 3333 37888888755 3333
Q ss_pred HHHHHHHHHHHh----CCCCCHHHHHHhh
Q 019145 253 AITYLQGAARLF----GSSITSKDLISVS 277 (345)
Q Consensus 253 ~~~~l~~~~~~~----~~~it~~~v~~~~ 277 (345)
+.+.+..++..+ ...|+.+|+.+++
T Consensus 392 I~~l~~eA~~~Air~~~~~It~eDf~~Al 420 (437)
T 4b4t_I 392 IQAMCTEAGLLALRERRMQVTAEDFKQAK 420 (437)
T ss_dssp HHHHHHHHHHHHHHTTCSCBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHH
Confidence 333444444332 2458888877664
No 32
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.86 E-value=4.9e-20 Score=167.70 Aligned_cols=231 Identities=21% Similarity=0.193 Sum_probs=160.8
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHHc----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCC----CCC-CCce
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET----ANCPHMLFYGPPGTGKTTTALAIAHQLFGP----ELY-KSRV 116 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~----~~~~~lll~G~~G~GKT~la~~la~~l~~~----~~~-~~~~ 116 (345)
....+|..+|.| ++++|+++.+..+..++.. +..++++|+||||||||++++.+++.+... ... +..+
T Consensus 8 ~~~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 84 (384)
T 2qby_B 8 NPKVFIDPLSVF---KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQ 84 (384)
T ss_dssp CTTTTTCHHHHC---SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEE
T ss_pred ccHhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceE
Confidence 455678889988 7789999988887766643 445569999999999999999999987321 112 4567
Q ss_pred eeeecCCcc-chH-HHHHHHHHHHHhhhcC-CCCCCC-------CCCCCeEEEEEcCCCCCCHHH-HHH-HHHHHhhcCC
Q 019145 117 LELNASDDR-GIN-VVRTKIKTFAAVAVGS-GQRRGG-------YPCPPYKIIILDEADSMTEDA-QNA-LRRTMETYSK 184 (345)
Q Consensus 117 ~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~iliiDE~~~l~~~~-~~~-l~~~le~~~~ 184 (345)
+.+++.... +.. .+...+..+....... +..... .......+|+|||+|.+.... ++. +..+++.. .
T Consensus 85 ~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~ 163 (384)
T 2qby_B 85 AYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-A 163 (384)
T ss_dssp EEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-S
T ss_pred EEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-c
Confidence 778765432 221 1222222211000000 000000 000112399999999986542 455 55555544 6
Q ss_pred ceEEEEecCcc---cccchhhhccc-eeEEecCCCHHHHHHHHHHHHHH--hCCCCCHHHHHHHHHhcC---CCHHHHHH
Q 019145 185 VTRFFFICNYI---SRIIEPLASRC-AKFRFKPLSEEVMSSRVLHICNE--EGLNLDAEALSTLSSISQ---GDLRRAIT 255 (345)
Q Consensus 185 ~~~ii~~~n~~---~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~--~~~~i~~~~~~~l~~~s~---g~~r~~~~ 255 (345)
.+.+|+++|.. ..+.+.+.+|+ ..+.|+|++.+++..++..++.. .+..+++++++.+++.++ ||+|.+++
T Consensus 164 ~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~ 243 (384)
T 2qby_B 164 NISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVN 243 (384)
T ss_dssp CEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHH
T ss_pred ceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHH
Confidence 78888888876 56788898885 59999999999999999999875 346789999999999988 99999999
Q ss_pred HHHHHHHHhC--CCCCHHHHHHhhCCC
Q 019145 256 YLQGAARLFG--SSITSKDLISVSGVI 280 (345)
Q Consensus 256 ~l~~~~~~~~--~~it~~~v~~~~~~~ 280 (345)
.++.++..+. ..|+.++|.+++...
T Consensus 244 ~l~~a~~~a~~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 244 LLFRAAQLASGGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp HHHHHHHHTTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 9999887763 469999998886653
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.85 E-value=2e-20 Score=165.31 Aligned_cols=184 Identities=22% Similarity=0.229 Sum_probs=143.4
Q ss_pred cccccHHHHHHHHHHHH---------------cCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC-CCCceeeeecCCcc
Q 019145 62 DVAHQEEVVRVLTNTLE---------------TANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL-YKSRVLELNASDDR 125 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~---------------~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~-~~~~~~~~~~~~~~ 125 (345)
+++|++.+++.+.+++. .....+++|+||||||||++|+++++.+..... ....++.+++.+..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 68999999988887664 233446999999999999999999999843222 23467777664421
Q ss_pred c------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCC---------CHHHHHHHHHHHhhcCCceEEEE
Q 019145 126 G------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM---------TEDAQNALRRTMETYSKVTRFFF 190 (345)
Q Consensus 126 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l---------~~~~~~~l~~~le~~~~~~~ii~ 190 (345)
+ ...+...+... ...+|+|||++.+ +...++.|++.+++.+..+.+|+
T Consensus 112 ~~~~g~~~~~~~~~~~~~-----------------~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~ 174 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRA-----------------MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVIL 174 (309)
T ss_dssp CSSTTCHHHHHHHHHHHH-----------------TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEE
T ss_pred hhcccccHHHHHHHHHhc-----------------CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEE
Confidence 1 11122222211 1249999999977 77889999999999888888999
Q ss_pred ecCccc-----ccchhhhccc-eeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh--------cCCCHHHHHHH
Q 019145 191 ICNYIS-----RIIEPLASRC-AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI--------SQGDLRRAITY 256 (345)
Q Consensus 191 ~~n~~~-----~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~--------s~g~~r~~~~~ 256 (345)
++|... .+.+++.+|| ..+.|++|+.+++..++..++...++.++++++..++++ ..||+|.+.+.
T Consensus 175 ~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~ 254 (309)
T 3syl_A 175 AGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNA 254 (309)
T ss_dssp EECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHH
T ss_pred eCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHH
Confidence 987543 3468999999 599999999999999999999999999999999999986 45999999999
Q ss_pred HHHHHH
Q 019145 257 LQGAAR 262 (345)
Q Consensus 257 l~~~~~ 262 (345)
++.+..
T Consensus 255 l~~a~~ 260 (309)
T 3syl_A 255 LDRARL 260 (309)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988874
No 34
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2.8e-20 Score=168.70 Aligned_cols=203 Identities=22% Similarity=0.241 Sum_probs=143.9
Q ss_pred hCCCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeec
Q 019145 55 YRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (345)
Q Consensus 55 ~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 121 (345)
-.+.+|+++.|.+++++.|.+.+.. ..+..+|||||||||||++|+++|+++ +.+++.+++
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~------~~~f~~v~~ 248 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT------NATFLKLAA 248 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH------TCEEEEEEG
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh------CCCEEEEeh
Confidence 3455899999999999888876521 234459999999999999999999999 788888887
Q ss_pred CCcc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------H---HHHHHHHHHHhh
Q 019145 122 SDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------E---DAQNALRRTMET 181 (345)
Q Consensus 122 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~---~~~~~l~~~le~ 181 (345)
++.. +...++..+....... +.||+|||+|.+. . .....|+..++.
T Consensus 249 s~l~~~~vGese~~ir~lF~~A~~~a--------------P~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg 314 (434)
T 4b4t_M 249 PQLVQMYIGEGAKLVRDAFALAKEKA--------------PTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDG 314 (434)
T ss_dssp GGGCSSCSSHHHHHHHHHHHHHHHHC--------------SEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTT
T ss_pred hhhhhcccchHHHHHHHHHHHHHhcC--------------CeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhc
Confidence 6532 2233444444443332 3599999999762 1 134567777765
Q ss_pred cC--CceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcCC-CHHHHH
Q 019145 182 YS--KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQG-DLRRAI 254 (345)
Q Consensus 182 ~~--~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~~~s~g-~~r~~~ 254 (345)
.. ..+.+|.+||.++.+++++++ |++ .++|+.|+.++..++++..++.... +++ .++.|++.+.| +...+.
T Consensus 315 ~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~--~~dvdl~~lA~~t~G~sGADi~ 392 (434)
T 4b4t_M 315 FSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT--DDDINWQELARSTDEFNGAQLK 392 (434)
T ss_dssp SCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB--CSCCCHHHHHHHCSSCCHHHHH
T ss_pred cCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC--CCcCCHHHHHHhCCCCCHHHHH
Confidence 43 456788899999999999988 777 7999999999999999988876543 232 26788888755 333333
Q ss_pred HHHHHHHHHh----CCCCCHHHHHHhhCC
Q 019145 255 TYLQGAARLF----GSSITSKDLISVSGV 279 (345)
Q Consensus 255 ~~l~~~~~~~----~~~it~~~v~~~~~~ 279 (345)
+.+..++..+ ...|+.+|+.+++..
T Consensus 393 ~l~~eA~~~a~r~~~~~i~~~Df~~Al~~ 421 (434)
T 4b4t_M 393 AVTVEAGMIALRNGQSSVKHEDFVEGISE 421 (434)
T ss_dssp HHHHHHHHHHHHHTCSSBCHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 4444433332 345898888777644
No 35
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.85 E-value=8.8e-21 Score=174.84 Aligned_cols=213 Identities=16% Similarity=0.183 Sum_probs=155.2
Q ss_pred hCCC-CCcccc-c--cHHHHHHHHHHHHcCC-CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHH
Q 019145 55 YRPK-QVKDVA-H--QEEVVRVLTNTLETAN-CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINV 129 (345)
Q Consensus 55 ~~p~-~~~~~~-g--~~~~~~~l~~~l~~~~-~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 129 (345)
+.|. +|++++ | +......+..+..... .++++|+||||+||||+++++++.+... ..+..++.+++... ...
T Consensus 98 l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~-~~~~~v~~v~~~~~--~~~ 174 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITSEKF--LND 174 (440)
T ss_dssp CCTTCSGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHH-CCSSCEEEEEHHHH--HHH
T ss_pred CCCCCChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEeeHHHH--HHH
Confidence 4444 888887 5 3444556666666544 5679999999999999999999987322 12345666665431 111
Q ss_pred HHHHHH-----HHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--HHHHHHHHHHhhcC-CceEEEEecCc-ccc---
Q 019145 130 VRTKIK-----TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYS-KVTRFFFICNY-ISR--- 197 (345)
Q Consensus 130 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--~~~~~l~~~le~~~-~~~~ii~~~n~-~~~--- 197 (345)
+...+. .+.... ....++|+|||++.+.. ..++.|+..++... ....+|++++. +..
T Consensus 175 ~~~~~~~~~~~~~~~~~-----------~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~ 243 (440)
T 2z4s_A 175 LVDSMKEGKLNEFREKY-----------RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSE 243 (440)
T ss_dssp HHHHHHTTCHHHHHHHH-----------TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSS
T ss_pred HHHHHHcccHHHHHHHh-----------cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHH
Confidence 111111 111000 01346999999999975 67788888887533 34556666654 333
Q ss_pred cchhhhccc---eeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHh---CCCCCHH
Q 019145 198 IIEPLASRC---AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF---GSSITSK 271 (345)
Q Consensus 198 l~~~l~~r~---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~~---~~~it~~ 271 (345)
+.+++.+|+ .++.+.+|+.+++..++...+...++.++++++..|++.++||+|.+.+.++.+..++ +..||.+
T Consensus 244 l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~ 323 (440)
T 2z4s_A 244 FQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLK 323 (440)
T ss_dssp CCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHH
T ss_pred HHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 779999999 4899999999999999999999999999999999999999999999999999887665 5679999
Q ss_pred HHHHhhCCCC
Q 019145 272 DLISVSGVIP 281 (345)
Q Consensus 272 ~v~~~~~~~~ 281 (345)
++.+++....
T Consensus 324 ~~~~~l~~~~ 333 (440)
T 2z4s_A 324 EAILLLKDFI 333 (440)
T ss_dssp HHHHHTSTTT
T ss_pred HHHHHHHHHh
Confidence 9999987654
No 36
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.85 E-value=4e-20 Score=163.27 Aligned_cols=204 Identities=18% Similarity=0.267 Sum_probs=147.4
Q ss_pred cccccHHHHHHHHHHHHc--------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc-
Q 019145 62 DVAHQEEVVRVLTNTLET--------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG- 126 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~--------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~- 126 (345)
+++|++.++..+...+.. ....+++|+||||||||++|+++++.+ +..++.+++.....
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l------~~~~~~i~~~~~~~~ 89 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA------NAPFIKVEATKFTEV 89 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEEEGGGGSSC
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh------CCCEEEEcchhcccC
Confidence 588999999988887754 245679999999999999999999998 55677777654321
Q ss_pred -------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHH------------HHHHHHHHhhc-----
Q 019145 127 -------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDA------------QNALRRTMETY----- 182 (345)
Q Consensus 127 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~------------~~~l~~~le~~----- 182 (345)
...+...+...... .. ....+.+|+|||++.++.+. ++.|+++++..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~ 160 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAGGA-ID--------AVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTK 160 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTTTC-HH--------HHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEET
T ss_pred CccCccHHHHHHHHHHHhhHH-Hh--------hccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecc
Confidence 11122222110000 00 00124599999999997543 78899999863
Q ss_pred -----CCceEEEEec----Ccccccchhhhccce-eEEecCCCHHHHHHHHHH-----------HHHHhCC--CCCHHHH
Q 019145 183 -----SKVTRFFFIC----NYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLH-----------ICNEEGL--NLDAEAL 239 (345)
Q Consensus 183 -----~~~~~ii~~~----n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~-----------~~~~~~~--~i~~~~~ 239 (345)
...+.+|+++ +.+..+.+++.+||. .+.|++|+.+++..+++. .+...+. .++++++
T Consensus 161 ~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 240 (310)
T 1ofh_A 161 HGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAV 240 (310)
T ss_dssp TEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHH
T ss_pred cccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHH
Confidence 2356677774 456778999999997 699999999999999983 2333453 5899999
Q ss_pred HHHHHhc--------CCCHHHHHHHHHHHHHH-----h---CC--CCCHHHHHHhhCCC
Q 019145 240 STLSSIS--------QGDLRRAITYLQGAARL-----F---GS--SITSKDLISVSGVI 280 (345)
Q Consensus 240 ~~l~~~s--------~g~~r~~~~~l~~~~~~-----~---~~--~it~~~v~~~~~~~ 280 (345)
+.|++.+ .||+|.+.+.++.+... . +. .||.++|.++++..
T Consensus 241 ~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 241 KKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSS
T ss_pred HHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhh
Confidence 9999988 79999999999876521 1 11 39999999988753
No 37
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=7e-20 Score=165.60 Aligned_cols=198 Identities=19% Similarity=0.213 Sum_probs=139.8
Q ss_pred CCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc
Q 019145 58 KQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (345)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (345)
.+|+|+.|.+++++.|++.+.. ..+..+|||||||||||++|+++|+++ +.+|+.+++++.
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~------~~~fi~vs~s~L 279 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT------DATFIRVIGSEL 279 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH------TCEEEEEEGGGG
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc------CCCeEEEEhHHh
Confidence 5899999999999988876532 234559999999999999999999999 778888887653
Q ss_pred cc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------------HHHHHHHHHHhhc--
Q 019145 125 RG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETY-- 182 (345)
Q Consensus 125 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------------~~~~~l~~~le~~-- 182 (345)
.+ ...++..+...... .+.||+|||+|.+.. .....++..++..
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~--------------aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTK--------------KACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHT--------------CSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred hcccCCHHHHHHHHHHHHHHhc--------------CCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 22 23344444443332 235999999998731 2344566666543
Q ss_pred CCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcCC-CHHHHHHHH
Q 019145 183 SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQG-DLRRAITYL 257 (345)
Q Consensus 183 ~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~~~s~g-~~r~~~~~l 257 (345)
...+.+|++||.++.+++++++ |++ .++|+.|+.++..++++..++... ++++ .++.|++.+.| +...+.+.+
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~--l~~dvdl~~LA~~T~GfSGADI~~l~ 423 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS--VERGIRWELISRLCPNSTGAELRSVC 423 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC--BCSSCCHHHHHHHCCSCCHHHHHHHH
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC--CCCCCCHHHHHHHCCCCCHHHHHHHH
Confidence 3467788899999999999998 887 899999999999999988876543 3332 36778888765 233333333
Q ss_pred HHHHHHh----CCCCCHHHHHHhh
Q 019145 258 QGAARLF----GSSITSKDLISVS 277 (345)
Q Consensus 258 ~~~~~~~----~~~it~~~v~~~~ 277 (345)
..++..+ ...|+.+|+..++
T Consensus 424 ~eAa~~Air~~~~~it~~Df~~Al 447 (467)
T 4b4t_H 424 TEAGMFAIRARRKVATEKDFLKAV 447 (467)
T ss_dssp HHHHHHHHHHTCSSBCHHHHHHHH
T ss_pred HHHHHHHHHcCCCccCHHHHHHHH
Confidence 3333322 3457888776654
No 38
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.4e-19 Score=164.32 Aligned_cols=200 Identities=19% Similarity=0.184 Sum_probs=141.5
Q ss_pred CCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (345)
..+|+++.|.+++++.|.+.+.. ..+..+|||||||||||++|+++|+++ +.+++.+++++
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~------~~~~~~v~~s~ 250 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI------GANFIFSPASG 250 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH------TCEEEEEEGGG
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh------CCCEEEEehhh
Confidence 44899999999999888887642 223459999999999999999999999 78888888765
Q ss_pred ccc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC--------------HHHHHHHHHHHhhcC
Q 019145 124 DRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------------EDAQNALRRTMETYS 183 (345)
Q Consensus 124 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~--------------~~~~~~l~~~le~~~ 183 (345)
..+ ...++..+...... .+.||||||+|.+. ....+.|+..++...
T Consensus 251 l~sk~~Gese~~ir~~F~~A~~~--------------~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 251 IVDKYIGESARIIREMFAYAKEH--------------EPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp TCCSSSSHHHHHHHHHHHHHHHS--------------CSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred hccccchHHHHHHHHHHHHHHhc--------------CCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 322 22333343333222 34699999999873 123556777776543
Q ss_pred --CceEEEEecCcccccchhhhcc--ce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHHHH
Q 019145 184 --KVTRFFFICNYISRIIEPLASR--CA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITYL 257 (345)
Q Consensus 184 --~~~~ii~~~n~~~~l~~~l~~r--~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g-~~r~~~~~l 257 (345)
..+.+|++||.++.++++++++ ++ .++|+.|+.++...+++..++..... ++..+..+++.+.| +...+.+.+
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sGADi~~l~ 395 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADIRNCA 395 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCHHHHHHHH
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCCCCHHHHHHHH
Confidence 4578899999999999999885 55 79999999999999998888654432 12237888888765 333333444
Q ss_pred HHHHHHh----CCCCCHHHHHHhh
Q 019145 258 QGAARLF----GSSITSKDLISVS 277 (345)
Q Consensus 258 ~~~~~~~----~~~it~~~v~~~~ 277 (345)
..++..+ ...|+.+|+.+++
T Consensus 396 ~eA~~~air~~~~~i~~~d~~~Al 419 (437)
T 4b4t_L 396 TEAGFFAIRDDRDHINPDDLMKAV 419 (437)
T ss_dssp HHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHH
Confidence 4444332 2458888876654
No 39
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.85 E-value=1.3e-19 Score=156.20 Aligned_cols=201 Identities=18% Similarity=0.125 Sum_probs=136.2
Q ss_pred CCCCccccccHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (345)
+.+|++++|.+.+++.+.+++.. ....+++|+||||||||++|+++++++ +.+++.+++.+.
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~------~~~~~~~~~~~~ 75 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA------QVPFLAMAGAEF 75 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH------TCCEEEEETTTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh------CCCEEEechHHH
Confidence 35789999999998888776532 233458999999999999999999998 567788877653
Q ss_pred cc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH------------HH---HHHHHHHHhh--
Q 019145 125 RG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE------------DA---QNALRRTMET-- 181 (345)
Q Consensus 125 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~------------~~---~~~l~~~le~-- 181 (345)
.. ...+...+..... ....+|+|||+|.+.. .. ...++..++.
T Consensus 76 ~~~~~~~~~~~~~~~~~~a~~--------------~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 141 (262)
T 2qz4_A 76 VEVIGGLGAARVRSLFKEARA--------------RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG 141 (262)
T ss_dssp SSSSTTHHHHHHHHHHHHHHH--------------TCSEEEEEECC-------------------CHHHHHHHHHHHTCC
T ss_pred HhhccChhHHHHHHHHHHHHh--------------cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC
Confidence 22 1122222222211 1246999999999832 22 2344444443
Q ss_pred cCCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhcCCC-HHHHHHH
Q 019145 182 YSKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQGD-LRRAITY 256 (345)
Q Consensus 182 ~~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~s~g~-~r~~~~~ 256 (345)
....+.+|.++|.+..+++++.+ |+. .+.|++|+.++..++++.++...+...+.+. ...+++.+.|. .+.+.+.
T Consensus 142 ~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 142 TTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp TTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 23467788889999999999998 885 8899999999999999999998888877664 57888888775 4455556
Q ss_pred HHHHHHHh----CCCCCHHHHHHhh
Q 019145 257 LQGAARLF----GSSITSKDLISVS 277 (345)
Q Consensus 257 l~~~~~~~----~~~it~~~v~~~~ 277 (345)
+..++..+ ...|+.+++.+++
T Consensus 222 ~~~a~~~a~~~~~~~i~~~d~~~a~ 246 (262)
T 2qz4_A 222 CNEAALHAAREGHTSVHTLNFEYAV 246 (262)
T ss_dssp HHHHHTC--------CCBCCHHHHH
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 66555443 2336666665543
No 40
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.85 E-value=1.9e-19 Score=159.40 Aligned_cols=189 Identities=17% Similarity=0.160 Sum_probs=140.5
Q ss_pred hhCCCCCccccccHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeec
Q 019145 54 KYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (345)
Q Consensus 54 ~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 121 (345)
.+.+.+|+++.|.+.+++.|.+.+.. ....++||+||||||||++|+++++++. +..++.+++
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-----~~~~~~i~~ 79 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-----NSTFFSISS 79 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-----SCEEEEEEC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-----CCcEEEEEh
Confidence 34566899999999999999887732 1224599999999999999999999872 345666776
Q ss_pred CCcc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHhhc--
Q 019145 122 SDDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETY-- 182 (345)
Q Consensus 122 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le~~-- 182 (345)
++.. ....++..+..... ....+|+|||+|.+. ....+.++..++..
T Consensus 80 ~~l~~~~~g~~~~~~~~lf~~a~~--------------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~ 145 (322)
T 1xwi_A 80 SDLVSKWLGESEKLVKNLFQLARE--------------NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV 145 (322)
T ss_dssp CSSCCSSCCSCHHHHHHHHHHHHH--------------TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSS
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHh--------------cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccc
Confidence 5422 22233333333221 134699999999882 23456777777653
Q ss_pred -CCceEEEEecCcccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC-HHHHHHHHHH
Q 019145 183 -SKVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD-LRRAITYLQG 259 (345)
Q Consensus 183 -~~~~~ii~~~n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~-~r~~~~~l~~ 259 (345)
...+.+|.+||.+..+++++++|+. .+.+++|+.++...+++..+...+..+++..+..|++.+.|. .+.+.+.+..
T Consensus 146 ~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~ 225 (322)
T 1xwi_A 146 DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRD 225 (322)
T ss_dssp CCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHH
T ss_pred cCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4567788899999999999999996 789999999999999999998777778999999999999875 4444444444
Q ss_pred HH
Q 019145 260 AA 261 (345)
Q Consensus 260 ~~ 261 (345)
++
T Consensus 226 A~ 227 (322)
T 1xwi_A 226 AL 227 (322)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 41
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.84 E-value=1.2e-19 Score=158.41 Aligned_cols=204 Identities=17% Similarity=0.179 Sum_probs=143.7
Q ss_pred hhCCCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeee
Q 019145 54 KYRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (345)
Q Consensus 54 ~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 120 (345)
...+.+|++++|.+..++.+...+.. ....+++|+||||||||++++++++.+ +..++.++
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~------~~~~~~v~ 83 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET------NATFIRVV 83 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT------TCEEEEEE
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh------CCCEEEEe
Confidence 34456899999999999988887743 345569999999999999999999998 66777777
Q ss_pred cCCccc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCC-----------CHHHHHHHHHHHhh--
Q 019145 121 ASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM-----------TEDAQNALRRTMET-- 181 (345)
Q Consensus 121 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l-----------~~~~~~~l~~~le~-- 181 (345)
+..... ...+...+..... ....+|+|||++.+ ....+..+..+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~ 149 (285)
T 3h4m_A 84 GSELVKKFIGEGASLVKDIFKLAKE--------------KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMD 149 (285)
T ss_dssp GGGGCCCSTTHHHHHHHHHHHHHHH--------------TCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHhccchHHHHHHHHHHHHHH--------------cCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhh
Confidence 654211 1112222222211 13469999999987 33455555555543
Q ss_pred ---cCCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHH
Q 019145 182 ---YSKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAI 254 (345)
Q Consensus 182 ---~~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g-~~r~~~ 254 (345)
....+.+|+++|.+..+.+++.+ |+. .+.|++|+.++..++++..+...+.. ++..+..++..+.| ..+.+.
T Consensus 150 ~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 150 GFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVGAELK 228 (285)
T ss_dssp TTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTTCCHHHHH
T ss_pred CCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCCCCHHHHH
Confidence 23467888999999999999998 886 89999999999999999888765543 23346777877766 455555
Q ss_pred HHHHHHHHHh---C-CCCCHHHHHHhhC
Q 019145 255 TYLQGAARLF---G-SSITSKDLISVSG 278 (345)
Q Consensus 255 ~~l~~~~~~~---~-~~it~~~v~~~~~ 278 (345)
+.+..+...+ + ..|+.+++.+++.
T Consensus 229 ~l~~~a~~~a~~~~~~~I~~~d~~~al~ 256 (285)
T 3h4m_A 229 AICTEAGMNAIRELRDYVTMDDFRKAVE 256 (285)
T ss_dssp HHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcCCHHHHHHHHH
Confidence 5554444333 3 4599999887754
No 42
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.84 E-value=3.6e-20 Score=165.21 Aligned_cols=216 Identities=17% Similarity=0.151 Sum_probs=156.4
Q ss_pred chhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchH
Q 019145 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN 128 (345)
Q Consensus 49 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 128 (345)
.+|.++++|..+.+++|+++.+..+...+..+. +++|+||||||||++++++++.+ +..+..+++.......
T Consensus 15 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~--~vll~G~pGtGKT~la~~la~~~------~~~~~~i~~~~~~~~~ 86 (331)
T 2r44_A 15 RNKIKEVIDEVGKVVVGQKYMINRLLIGICTGG--HILLEGVPGLAKTLSVNTLAKTM------DLDFHRIQFTPDLLPS 86 (331)
T ss_dssp HHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHTC--CEEEESCCCHHHHHHHHHHHHHT------TCCEEEEECCTTCCHH
T ss_pred HHHHHHHHHHhccceeCcHHHHHHHHHHHHcCC--eEEEECCCCCcHHHHHHHHHHHh------CCCeEEEecCCCCChh
Confidence 369999999999999999999999988887754 79999999999999999999998 4566666664322222
Q ss_pred HHHHHHHHHHHhhhcCCC--CCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc-----------CCceEEEEecCcc
Q 019145 129 VVRTKIKTFAAVAVGSGQ--RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-----------SKVTRFFFICNYI 195 (345)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~-----------~~~~~ii~~~n~~ 195 (345)
.+.. ... .....+. ...+.. ...+++|||++.++.+.++.|++.+++. +..+.+|.++|+.
T Consensus 87 ~l~g---~~~-~~~~~~~~~~~~g~l--~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~ 160 (331)
T 2r44_A 87 DLIG---TMI-YNQHKGNFEVKKGPV--FSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV 160 (331)
T ss_dssp HHHE---EEE-EETTTTEEEEEECTT--CSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT
T ss_pred hcCC---cee-ecCCCCceEeccCcc--cccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC
Confidence 1110 000 0000000 000000 1359999999999999999999999863 3445666666643
Q ss_pred c-----ccchhhhccce-eEEecCCCHHHHHHHHHHHHHH----------------------hCCCCCHHHHHHHHHhc-
Q 019145 196 S-----RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNE----------------------EGLNLDAEALSTLSSIS- 246 (345)
Q Consensus 196 ~-----~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~----------------------~~~~i~~~~~~~l~~~s- 246 (345)
. .+.+++.+||. .+.+.+|+.++..++++..+.. .++.+++++++.+++.+
T Consensus 161 ~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~ 240 (331)
T 2r44_A 161 EQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVF 240 (331)
T ss_dssp CCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHH
T ss_pred cccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 3 37899999998 5999999999999999887654 26778999999987654
Q ss_pred -------------------CCCHHHHHHHHHHHHHHh---CC-CCCHHHHHHhhC
Q 019145 247 -------------------QGDLRRAITYLQGAARLF---GS-SITSKDLISVSG 278 (345)
Q Consensus 247 -------------------~g~~r~~~~~l~~~~~~~---~~-~it~~~v~~~~~ 278 (345)
+.++|.+++.+..+...+ +. .|+.++|.+++.
T Consensus 241 ~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~ 295 (331)
T 2r44_A 241 ATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAY 295 (331)
T ss_dssp HHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred HHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 226999988887655443 43 488888877643
No 43
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.84 E-value=5e-20 Score=160.89 Aligned_cols=200 Identities=8% Similarity=0.071 Sum_probs=136.8
Q ss_pred ccccHHHHH----HHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC----CCCCCceeeeecCCccchHHHH-HH
Q 019145 63 VAHQEEVVR----VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP----ELYKSRVLELNASDDRGINVVR-TK 133 (345)
Q Consensus 63 ~~g~~~~~~----~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~----~~~~~~~~~~~~~~~~~~~~~~-~~ 133 (345)
+.++++.+. .|...+..+.+++++|+||||||||++++.+++++... ....+.++.+||....+...+. ..
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 566666554 44556667788889999999999999999999998422 1224678889987654433222 22
Q ss_pred HHHHHHhhhcCCCC---------CCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhh---cCCceEEEEecCccc----c
Q 019145 134 IKTFAAVAVGSGQR---------RGGYPCPPYKIIILDEADSMTEDAQNALRRTMET---YSKVTRFFFICNYIS----R 197 (345)
Q Consensus 134 ~~~~~~~~~~~~~~---------~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~---~~~~~~ii~~~n~~~----~ 197 (345)
...+.......+.. ..........||++||+|.+. .++.|+.+++. ....+.+|+++|..+ .
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~ 179 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIREQ 179 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHH
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccchhh
Confidence 22221100000000 000012345799999999997 55666666653 234567788887653 3
Q ss_pred cchhhhccc--eeEEecCCCHHHHHHHHHHHHHHhCC-----------------------------------CCCHHHHH
Q 019145 198 IIEPLASRC--AKFRFKPLSEEVMSSRVLHICNEEGL-----------------------------------NLDAEALS 240 (345)
Q Consensus 198 l~~~l~~r~--~~i~~~~~~~~~~~~~l~~~~~~~~~-----------------------------------~i~~~~~~ 240 (345)
+.+++.+|+ ..+.|+|++.+|+.++++.++....- .+++++++
T Consensus 180 L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~ 259 (318)
T 3te6_A 180 INIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQ 259 (318)
T ss_dssp HHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHH
T ss_pred cchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHH
Confidence 566778887 47999999999999999999876321 37999999
Q ss_pred HHHH---hcCCCHHHHHHHHHHHHHHh
Q 019145 241 TLSS---ISQGDLRRAITYLQGAARLF 264 (345)
Q Consensus 241 ~l~~---~s~g~~r~~~~~l~~~~~~~ 264 (345)
.+++ .++||+|.+++.|+.++..+
T Consensus 260 ~~A~~vA~~~GD~R~Al~ilr~A~~~a 286 (318)
T 3te6_A 260 LIAKNVANVSGSTEKAFKICEAAVEIS 286 (318)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCChHHHHHHHHHHHHHHH
Confidence 9998 57999999999999988765
No 44
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.84 E-value=1.6e-19 Score=166.79 Aligned_cols=192 Identities=18% Similarity=0.164 Sum_probs=142.6
Q ss_pred hhhhhCCCCCccccccHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceee
Q 019145 51 WVEKYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLE 118 (345)
Q Consensus 51 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~ 118 (345)
+...+.+.+|++++|++.++..|..++.. ....++||+||||||||++|+++++++. +.+++.
T Consensus 124 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~-----~~~~~~ 198 (444)
T 2zan_A 124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-----NSTFFS 198 (444)
T ss_dssp CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC-----SSEEEE
T ss_pred eeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC-----CCCEEE
Confidence 34567788999999999999999887731 2335699999999999999999999872 346677
Q ss_pred eecCCccch------HHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHhh
Q 019145 119 LNASDDRGI------NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMET 181 (345)
Q Consensus 119 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le~ 181 (345)
+++++..+. ..++..+..... ..+.+|||||+|.+. ....+.|+..++.
T Consensus 199 v~~~~l~~~~~g~~~~~~~~~f~~a~~--------------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~ 264 (444)
T 2zan_A 199 ISSSDLVSKWLGESEKLVKNLFQLARE--------------NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQG 264 (444)
T ss_dssp ECCC---------CCCTHHHHHHHHHH--------------SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTC
T ss_pred EeHHHHHhhhcchHHHHHHHHHHHHHH--------------cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhC
Confidence 776543221 122233322211 134699999999883 3456777777765
Q ss_pred c---CCceEEEEecCcccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHHHH
Q 019145 182 Y---SKVTRFFFICNYISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAITY 256 (345)
Q Consensus 182 ~---~~~~~ii~~~n~~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g-~~r~~~~~ 256 (345)
. ...+.+|.+||.+..+++++++||. .+.+++|+.++...+++..+...+..+++..+..|++.+.| +.+.+.+.
T Consensus 265 ~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 265 VGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp SSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred cccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 3 4568888899999999999999996 88999999999999999998877777899999999999988 44455555
Q ss_pred HHHHH
Q 019145 257 LQGAA 261 (345)
Q Consensus 257 l~~~~ 261 (345)
+..++
T Consensus 345 ~~~a~ 349 (444)
T 2zan_A 345 VRDAL 349 (444)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 45
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.83 E-value=1.7e-19 Score=160.29 Aligned_cols=201 Identities=15% Similarity=0.160 Sum_probs=143.2
Q ss_pred CCCcccc-c--cHHHHHHHHHHHHcCC--CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHH
Q 019145 58 KQVKDVA-H--QEEVVRVLTNTLETAN--CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRT 132 (345)
Q Consensus 58 ~~~~~~~-g--~~~~~~~l~~~l~~~~--~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (345)
.+|++++ | +......+..++.... .++++|+||||||||++++++++.+... +..++.+++.+. ...+..
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~~~~--~~~~~~ 82 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSADDF--AQAMVE 82 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEHHHH--HHHHHH
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEHHHH--HHHHHH
Confidence 3788887 4 4555667777776653 4569999999999999999999987432 456777766432 111111
Q ss_pred HHH-----HHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--HHHHHHHHHHhhcC-CceEEEEecCc-cc---ccch
Q 019145 133 KIK-----TFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNALRRTMETYS-KVTRFFFICNY-IS---RIIE 200 (345)
Q Consensus 133 ~~~-----~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--~~~~~l~~~le~~~-~~~~ii~~~n~-~~---~l~~ 200 (345)
.+. .+.... ....+|+|||++.+.. ..++.++.+++... ....+|++++. +. .+.+
T Consensus 83 ~~~~~~~~~~~~~~------------~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~ 150 (324)
T 1l8q_A 83 HLKKGTINEFRNMY------------KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSD 150 (324)
T ss_dssp HHHHTCHHHHHHHH------------HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCH
T ss_pred HHHcCcHHHHHHHh------------cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhh
Confidence 111 111100 1245999999999975 66777777776432 23456666543 33 5789
Q ss_pred hhhccc---eeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHH-------h-CCCC-
Q 019145 201 PLASRC---AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARL-------F-GSSI- 268 (345)
Q Consensus 201 ~l~~r~---~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~~~~~-------~-~~~i- 268 (345)
++.+|+ ..+.|+| +.++...++...+...++.+++++++.|++.+ ||+|.+.+.++.+..+ . ...|
T Consensus 151 ~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~l~~~~~~~~~~l~~~~~~~i~ 228 (324)
T 1l8q_A 151 RLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLIKLKGFEGLERKERKERD 228 (324)
T ss_dssp HHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHHHHHHHHcCHHHhccccccCCC
Confidence 999999 5899999 99999999999999999999999999999999 9999999999988766 1 1235
Q ss_pred CHHHHHHhh
Q 019145 269 TSKDLISVS 277 (345)
Q Consensus 269 t~~~v~~~~ 277 (345)
|.++|.+++
T Consensus 229 t~~~i~~~~ 237 (324)
T 1l8q_A 229 KLMQIVEFV 237 (324)
T ss_dssp HHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 666665554
No 46
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.83 E-value=2.1e-19 Score=163.37 Aligned_cols=222 Identities=18% Similarity=0.245 Sum_probs=155.0
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHc----CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLET----ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~----~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
...++..+|.| ++++|++..+..+..++.. +...+++|+||+|||||++++.+++.+......+..++.+++.
T Consensus 9 ~~~~l~~~~~p---~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 9 NREYLLPDYIP---DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp CGGGGSSSCCC---SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred chhhCCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 44456666766 6789999999999888874 4455699999999999999999999873211103456666653
Q ss_pred CccchHH-------------------HHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC----HHHHHHHHHHH
Q 019145 123 DDRGINV-------------------VRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT----EDAQNALRRTM 179 (345)
Q Consensus 123 ~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~----~~~~~~l~~~l 179 (345)
....... .......+..... ..+.+.+|+|||++.+. .+....++..+
T Consensus 86 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~---------~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~ 156 (386)
T 2qby_A 86 QIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVR---------DYGSQVVIVLDEIDAFVKKYNDDILYKLSRIN 156 (386)
T ss_dssp HHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHH---------TCCSCEEEEEETHHHHHHSSCSTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh---------ccCCeEEEEEcChhhhhccCcCHHHHHHhhch
Confidence 2111111 0111111111100 01235799999999875 34566677777
Q ss_pred hhc-CCceEEEEecCcc---cccchhhhccc--eeEEecCCCHHHHHHHHHHHHHHhC--CCCCHHHHHHHHHhcC---C
Q 019145 180 ETY-SKVTRFFFICNYI---SRIIEPLASRC--AKFRFKPLSEEVMSSRVLHICNEEG--LNLDAEALSTLSSISQ---G 248 (345)
Q Consensus 180 e~~-~~~~~ii~~~n~~---~~l~~~l~~r~--~~i~~~~~~~~~~~~~l~~~~~~~~--~~i~~~~~~~l~~~s~---g 248 (345)
+.. ..++.+|++++.. ..+.+.+.+|+ ..+.|+|++.+++.+++...+.... ..+++++++.+++.++ |
T Consensus 157 ~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G 236 (386)
T 2qby_A 157 SEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHG 236 (386)
T ss_dssp HSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTC
T ss_pred hhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 542 3467788888765 45678888888 5899999999999999999886533 5789999999999988 9
Q ss_pred CHHHHHHHHHHHHHHh---C-CCCCHHHHHHhhCCC
Q 019145 249 DLRRAITYLQGAARLF---G-SSITSKDLISVSGVI 280 (345)
Q Consensus 249 ~~r~~~~~l~~~~~~~---~-~~it~~~v~~~~~~~ 280 (345)
|+|.+++.++.++..+ + ..|+.+++.+++...
T Consensus 237 ~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 237 DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 9999999998877654 2 469999998876543
No 47
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=5.6e-19 Score=160.08 Aligned_cols=198 Identities=23% Similarity=0.239 Sum_probs=141.0
Q ss_pred CCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc
Q 019145 58 KQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (345)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (345)
.+|+|+.|.+++++.|.+.+.. ..+..+|||||||||||++|+++|+++ +.+++.+++++.
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~------~~~~~~v~~~~l 242 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST------KAAFIRVNGSEF 242 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH------TCEEEEEEGGGT
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh------CCCeEEEecchh
Confidence 4899999999999888877632 233459999999999999999999999 788888887653
Q ss_pred c------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC--------------HHHHHHHHHHHhhc--
Q 019145 125 R------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------------EDAQNALRRTMETY-- 182 (345)
Q Consensus 125 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~--------------~~~~~~l~~~le~~-- 182 (345)
. +...++..+...... .+.+++|||+|.+. ....+.|+..++..
T Consensus 243 ~~~~~Ge~e~~ir~lF~~A~~~--------------aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~ 308 (428)
T 4b4t_K 243 VHKYLGEGPRMVRDVFRLAREN--------------APSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ 308 (428)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHT--------------CSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS
T ss_pred hccccchhHHHHHHHHHHHHHc--------------CCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC
Confidence 2 223444544443332 23599999998651 13456777788753
Q ss_pred CCceEEEEecCcccccchhhhc--cce-eEEec-CCCHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHhcCC-CHHHHHHH
Q 019145 183 SKVTRFFFICNYISRIIEPLAS--RCA-KFRFK-PLSEEVMSSRVLHICNEEGLNLDAE-ALSTLSSISQG-DLRRAITY 256 (345)
Q Consensus 183 ~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~-~~~~~~~~~~l~~~~~~~~~~i~~~-~~~~l~~~s~g-~~r~~~~~ 256 (345)
..++.+|++||.++.+++++++ |++ .++|+ +|+.++...+++..++... ++++ .++.+++.+.| +...+.+.
T Consensus 309 ~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~--l~~~~dl~~lA~~t~G~sgadi~~l 386 (428)
T 4b4t_K 309 STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMS--LAPEADLDSLIIRNDSLSGAVIAAI 386 (428)
T ss_dssp SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSC--BCTTCCHHHHHHHTTTCCHHHHHHH
T ss_pred CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCC--CCcccCHHHHHHHCCCCCHHHHHHH
Confidence 3467788999999999999998 776 78895 6889999999988886544 3333 37888888755 33333344
Q ss_pred HHHHHHHh----CCCCCHHHHHHhh
Q 019145 257 LQGAARLF----GSSITSKDLISVS 277 (345)
Q Consensus 257 l~~~~~~~----~~~it~~~v~~~~ 277 (345)
+..++..+ ...|+.+|+.+++
T Consensus 387 ~~eA~~~a~r~~~~~i~~~d~~~A~ 411 (428)
T 4b4t_K 387 MQEAGLRAVRKNRYVILQSDLEEAY 411 (428)
T ss_dssp HHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHH
Confidence 44444332 2458888887654
No 48
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.82 E-value=1.5e-19 Score=162.39 Aligned_cols=224 Identities=17% Similarity=0.107 Sum_probs=143.7
Q ss_pred hhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCC-----CCCC-------------
Q 019145 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP-----ELYK------------- 113 (345)
Q Consensus 52 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~-----~~~~------------- 113 (345)
....+|.+|++++|++..+..+..........+++|+||||||||++|+++++.+... ...+
T Consensus 15 ~~~~~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (350)
T 1g8p_A 15 AKTRPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATV 94 (350)
T ss_dssp ---CCCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCC
T ss_pred CCCCCCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhh
Confidence 3455778999999999888776666555455579999999999999999999987320 0000
Q ss_pred ---------CceeeeecCCccchHHHHHH--HHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc
Q 019145 114 ---------SRVLELNASDDRGINVVRTK--IKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 182 (345)
Q Consensus 114 ---------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~ 182 (345)
..++.+... .....+... +........ .....+....+..++|+|||++.++.+.++.|++.+++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~--~~~~~l~g~~~~~~~~~~~~-~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~ 171 (350)
T 1g8p_A 95 LSTNVIRKPTPVVDLPLG--VSEDRVVGALDIERAISKGE-KAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSG 171 (350)
T ss_dssp SCCCEEEECCCEEEECTT--CCHHHHHCEECHHHHHHHCG-GGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHS
T ss_pred hccccccCCCcccccCCC--cchhhheeechhhhhhcCCc-eeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcC
Confidence 011111111 011111100 000000000 000000001123579999999999999999999999863
Q ss_pred -------------CCceEEEEecCccc-ccchhhhcccee-EEecCCC-HHHHHHHHHHH--------------------
Q 019145 183 -------------SKVTRFFFICNYIS-RIIEPLASRCAK-FRFKPLS-EEVMSSRVLHI-------------------- 226 (345)
Q Consensus 183 -------------~~~~~ii~~~n~~~-~l~~~l~~r~~~-i~~~~~~-~~~~~~~l~~~-------------------- 226 (345)
+..+.+|.++|... .+.+++.+||.. +.+++|+ .++...++...
T Consensus 172 ~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~ 251 (350)
T 1g8p_A 172 ENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMD 251 (350)
T ss_dssp EEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHH
Confidence 13566777788644 789999999985 9999995 44444555442
Q ss_pred ---------HHHhCCCCCHHHHHHHHHhcCC----CHHHHHHHHHHHHHHh---C-CCCCHHHHHHhhC
Q 019145 227 ---------CNEEGLNLDAEALSTLSSISQG----DLRRAITYLQGAARLF---G-SSITSKDLISVSG 278 (345)
Q Consensus 227 ---------~~~~~~~i~~~~~~~l~~~s~g----~~r~~~~~l~~~~~~~---~-~~it~~~v~~~~~ 278 (345)
....++.+++++++.|++.+.+ ++|.+.+.++.+...+ + ..|+.++|.+++.
T Consensus 252 ~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~ 320 (350)
T 1g8p_A 252 IRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVAT 320 (350)
T ss_dssp HHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 2234568999999999998855 8999999998766554 4 3599999877653
No 49
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.82 E-value=1.5e-19 Score=168.02 Aligned_cols=198 Identities=16% Similarity=0.220 Sum_probs=144.4
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCceeeeec
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNA 121 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~----~~~~~~~~~~~ 121 (345)
.-..+|.++++|..++.++|++..+..+...+.....++++|+||||||||++++++++.+.+.. ..+..++.+++
T Consensus 165 ~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 244 (468)
T 3pxg_A 165 SLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (468)
T ss_dssp SSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred HHHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeC
Confidence 34568999999999999999999999999999988888999999999999999999999985422 23556777776
Q ss_pred CCc-cc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCccc--
Q 019145 122 SDD-RG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS-- 196 (345)
Q Consensus 122 ~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~-- 196 (345)
... .+ ...+...+..... ....+|||| ...+.++.|+..++. ..+.+|.++|...
T Consensus 245 ~~~~~g~~e~~~~~~~~~~~~--------------~~~~iLfiD----~~~~a~~~L~~~L~~--g~v~vI~at~~~e~~ 304 (468)
T 3pxg_A 245 GTKYRGEFEDRLKKVMDEIRQ--------------AGNIILFID----AAIDASNILKPSLAR--GELQCIGATTLDEYR 304 (468)
T ss_dssp --------CTTHHHHHHHHHT--------------CCCCEEEEC----C--------CCCTTS--SSCEEEEECCTTTTH
T ss_pred CccccchHHHHHHHHHHHHHh--------------cCCeEEEEe----CchhHHHHHHHhhcC--CCEEEEecCCHHHHH
Confidence 511 00 1122333333221 123599999 445677778888874 4677888887665
Q ss_pred ---ccchhhhccceeEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhcCC------CHHHHHHHHHHHHHH
Q 019145 197 ---RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSISQG------DLRRAITYLQGAARL 263 (345)
Q Consensus 197 ---~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~s~g------~~r~~~~~l~~~~~~ 263 (345)
.+++++.+||..+.|++|+.++...+++.++.. +++.++++++..++..+.+ -++.++..++.++..
T Consensus 305 ~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~ 384 (468)
T 3pxg_A 305 KYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSK 384 (468)
T ss_dssp HHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHH
Confidence 578999999999999999999999999987765 7888999999999987643 356788888776643
No 50
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.82 E-value=1.8e-19 Score=155.64 Aligned_cols=212 Identities=17% Similarity=0.177 Sum_probs=138.0
Q ss_pred CCCccccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHH
Q 019145 58 KQVKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIK 135 (345)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (345)
.+|++++|+...+..+.+.+.. ....+++|+||||||||++|+++++.... .+.+++.+++.... ...+...+-
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~---~~~~~~~v~~~~~~-~~~~~~~l~ 78 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSR---WQGPFISLNCAALN-ENLLDSELF 78 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTT---TTSCEEEEEGGGSC-HHHHHHHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCc---cCCCeEEEecCCCC-hhHHHHHhc
Confidence 4688899998888777766643 33456999999999999999999988622 24578888887642 222211110
Q ss_pred HHHH-hhhcCCC-CCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc-----------CCceEEEEecCccc------
Q 019145 136 TFAA-VAVGSGQ-RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-----------SKVTRFFFICNYIS------ 196 (345)
Q Consensus 136 ~~~~-~~~~~~~-~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~-----------~~~~~ii~~~n~~~------ 196 (345)
.... ...+... ..+....+..++|+|||++.++.+.++.|++++++. +..+.+|+++|...
T Consensus 79 g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~ 158 (265)
T 2bjv_A 79 GHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNE 158 (265)
T ss_dssp CCC---------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHH
T ss_pred CCcccccccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHc
Confidence 0000 0000000 000000123469999999999999999999999864 24578899988742
Q ss_pred -ccchhhhccce--eEEecCCCH--HHHHHHHHH----HHHHhCC----CCCHHHHHHHHHhc-CCCHHHHHHHHHHHHH
Q 019145 197 -RIIEPLASRCA--KFRFKPLSE--EVMSSRVLH----ICNEEGL----NLDAEALSTLSSIS-QGDLRRAITYLQGAAR 262 (345)
Q Consensus 197 -~l~~~l~~r~~--~i~~~~~~~--~~~~~~l~~----~~~~~~~----~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~ 262 (345)
.+.+.+.+|+. .+.++|+.. +++..++.. .+...+. .+++++++.+..+. .||+|.+.+.++.++.
T Consensus 159 ~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~ 238 (265)
T 2bjv_A 159 GTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVY 238 (265)
T ss_dssp TSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHH
T ss_pred CCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 35688999986 577777765 566655444 4444554 68999999998775 8999999999999886
Q ss_pred Hh-CCCCCHHHH
Q 019145 263 LF-GSSITSKDL 273 (345)
Q Consensus 263 ~~-~~~it~~~v 273 (345)
.+ +..|+.+++
T Consensus 239 ~~~~~~i~~~~l 250 (265)
T 2bjv_A 239 RHGTSDYPLDDI 250 (265)
T ss_dssp HHCCSSSCBCCC
T ss_pred hCCCCcCcHHHc
Confidence 65 455776665
No 51
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.82 E-value=1.1e-18 Score=160.85 Aligned_cols=202 Identities=23% Similarity=0.217 Sum_probs=146.3
Q ss_pred hCCCCCccccccHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 55 YRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 55 ~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
..+.+|++++|.+..+..+.+.+.. ..+.+++|+||||||||+++++++.++ +.+++.++++
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~------~~~f~~is~~ 83 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA------NVPFFHISGS 83 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH------TCCEEEEEGG
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc------CCCeeeCCHH
Confidence 3445899999999998887776542 123459999999999999999999998 6678888775
Q ss_pred Cccc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------------HHHHHHHHHHhhc
Q 019145 123 DDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETY 182 (345)
Q Consensus 123 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------------~~~~~l~~~le~~ 182 (345)
+... ...++..+..... ..+.+|||||+|.+.. ..++.|+..++..
T Consensus 84 ~~~~~~~g~~~~~~r~lf~~A~~--------------~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~ 149 (476)
T 2ce7_A 84 DFVELFVGVGAARVRDLFAQAKA--------------HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGF 149 (476)
T ss_dssp GTTTCCTTHHHHHHHHHHHHHHH--------------TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhcccHHHHHHHHHHHHh--------------cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhcc
Confidence 4321 1223333333221 1346999999998742 2456677777642
Q ss_pred --CCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhcCCCH-HHHHH
Q 019145 183 --SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQGDL-RRAIT 255 (345)
Q Consensus 183 --~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~s~g~~-r~~~~ 255 (345)
...+.+|.+||.++.+++++.+ |+. .+.+++|+.++..++++..++... +.+++ +..++..+.|+. +.+.+
T Consensus 150 ~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~--l~~~v~l~~la~~t~G~sgadL~~ 227 (476)
T 2ce7_A 150 DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP--LAEDVNLEIIAKRTPGFVGADLEN 227 (476)
T ss_dssp CGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCCHHHHHH
T ss_pred CCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC--CcchhhHHHHHHhcCCCcHHHHHH
Confidence 3467788899999999999886 776 889999999999999988776543 33333 788999999887 67777
Q ss_pred HHHHHHHHh----CCCCCHHHHHHhhC
Q 019145 256 YLQGAARLF----GSSITSKDLISVSG 278 (345)
Q Consensus 256 ~l~~~~~~~----~~~it~~~v~~~~~ 278 (345)
.+..++..+ ...|+.+++.+++.
T Consensus 228 lv~~Aal~A~~~~~~~I~~~dl~~al~ 254 (476)
T 2ce7_A 228 LVNEAALLAAREGRDKITMKDFEEAID 254 (476)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeecHHHHHHHHH
Confidence 777766554 24699998877654
No 52
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.80 E-value=4.9e-19 Score=156.47 Aligned_cols=195 Identities=23% Similarity=0.326 Sum_probs=139.4
Q ss_pred ccccccHHHHHHHHHHHHcCC---------CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHH
Q 019145 61 KDVAHQEEVVRVLTNTLETAN---------CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~---------~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (345)
.+++|++.++..+...+.... ..+++|+||||||||++|+++++.+.+. ...++.+++..........
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~---~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT---EEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC---GGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC---CcceEEeecccccccccHH
Confidence 357899999988888876631 1358999999999999999999998442 3356677765432222111
Q ss_pred HHHHHHHHhhhcC-CCCCCC-----CCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCc
Q 019145 132 TKIKTFAAVAVGS-GQRRGG-----YPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNY 194 (345)
Q Consensus 132 ~~~~~~~~~~~~~-~~~~~~-----~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~ 194 (345)
..+. ..... +..... ....+..+|+|||++.++...++.|++++++.. .++.+|+++|.
T Consensus 94 ~l~g----~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~ 169 (311)
T 4fcw_A 94 RLIG----APPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNL 169 (311)
T ss_dssp HHHC----CCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEEST
T ss_pred HhcC----CCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEeccc
Confidence 1110 00000 000000 001234799999999999999999999998754 25568889987
Q ss_pred --------------------------ccccchhhhccce-eEEecCCCHHHHHHHHHHHHHHh---------CCCCCHHH
Q 019145 195 --------------------------ISRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEE---------GLNLDAEA 238 (345)
Q Consensus 195 --------------------------~~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~---------~~~i~~~~ 238 (345)
...+.+++.+|+. ++.|.|++.+++..++...+... .+.+++++
T Consensus 170 ~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~ 249 (311)
T 4fcw_A 170 GSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAA 249 (311)
T ss_dssp THHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHH
T ss_pred CHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHH
Confidence 4567889999995 88999999999999998876542 34589999
Q ss_pred HHHHHHhc---CCCHHHHHHHHHHHHH
Q 019145 239 LSTLSSIS---QGDLRRAITYLQGAAR 262 (345)
Q Consensus 239 ~~~l~~~s---~g~~r~~~~~l~~~~~ 262 (345)
++.+++++ .||+|.+.+.++.+..
T Consensus 250 ~~~l~~~~~~~~gn~R~L~~~i~~~~~ 276 (311)
T 4fcw_A 250 KDFLAERGYDPVFGARPLRRVIQRELE 276 (311)
T ss_dssp HHHHHHHSCBTTTBTTTHHHHHHHHTH
T ss_pred HHHHHHhCCCccCCchhHHHHHHHHHH
Confidence 99999976 4999999998887654
No 53
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.80 E-value=2.3e-18 Score=151.24 Aligned_cols=187 Identities=20% Similarity=0.206 Sum_probs=131.0
Q ss_pred hhCCCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeee
Q 019145 54 KYRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (345)
Q Consensus 54 ~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 120 (345)
...+.+|++++|.+.+++.+.+++.. ....+++|+||||||||++|+++++.+ +.+++.++
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~------~~~~i~v~ 81 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC------QANFISIK 81 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT------TCEEEEEC
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh------CCCEEEEE
Confidence 34567899999999999988887753 233459999999999999999999998 56777777
Q ss_pred cCCccc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHH--------------HHHHHHHHHh
Q 019145 121 ASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--------------AQNALRRTME 180 (345)
Q Consensus 121 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~--------------~~~~l~~~le 180 (345)
+.+... ...+...+..... ..+.+|+|||++.+... .++.|+..++
T Consensus 82 ~~~l~~~~~g~~~~~~~~~f~~a~~--------------~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~ 147 (301)
T 3cf0_A 82 GPELLTMWFGESEANVREIFDKARQ--------------AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMD 147 (301)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHH--------------TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHH
T ss_pred hHHHHhhhcCchHHHHHHHHHHHHh--------------cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhh
Confidence 643211 1112222222211 13469999999987543 3577888887
Q ss_pred hc--CCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHHH
Q 019145 181 TY--SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRAI 254 (345)
Q Consensus 181 ~~--~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g-~~r~~~ 254 (345)
.. ..++.+|++||.+..+++++.+ |+. .+.|++|+.++..++++.+++..+.. .+..+..++..+.| ..+.+.
T Consensus 148 ~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~sg~dl~ 226 (301)
T 3cf0_A 148 GMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLT 226 (301)
T ss_dssp SSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHTCSSCCHHHHH
T ss_pred cccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHHHHHHHcCCCCHHHHH
Confidence 43 3467888999999999999988 786 89999999999999999988766543 12224566666544 233444
Q ss_pred HHHHHHH
Q 019145 255 TYLQGAA 261 (345)
Q Consensus 255 ~~l~~~~ 261 (345)
+.++.++
T Consensus 227 ~l~~~a~ 233 (301)
T 3cf0_A 227 EICQRAC 233 (301)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444444
No 54
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.79 E-value=8e-18 Score=147.67 Aligned_cols=206 Identities=17% Similarity=0.210 Sum_probs=143.6
Q ss_pred cccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHH
Q 019145 62 DVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (345)
+++|+...+..+...+.. ....+++|+||||||||++|+++++... ..+.+++.++|..... ..+...+
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~---~~~~~~v~v~~~~~~~-~l~~~~l----- 73 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA---RSDRPLVTLNCAALNE-SLLESEL----- 73 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS---CSSSCCCEEECSSCCH-HHHHHHH-----
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc---ccCCCeEEEeCCCCCh-HHHHHHh-----
Confidence 578988888877777655 3445699999999999999999999752 2246788888876322 2111111
Q ss_pred hhhcCCCCCCC-------CCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCcc------
Q 019145 140 VAVGSGQRRGG-------YPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI------ 195 (345)
Q Consensus 140 ~~~~~~~~~~~-------~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~------ 195 (345)
+....+...+. ...+..++|||||++.++.+.+..|++++++.. ..+++|++||..
T Consensus 74 fg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~ 153 (304)
T 1ojl_A 74 FGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVS 153 (304)
T ss_dssp TCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHH
T ss_pred cCccccccCchhhhhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHH
Confidence 00000000000 001234699999999999999999999998753 357889988864
Q ss_pred -cccchhhhccce--eEEecCCC--HHHHHHHHHHHHH----HhC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHH
Q 019145 196 -SRIIEPLASRCA--KFRFKPLS--EEVMSSRVLHICN----EEG---LNLDAEALSTLSSIS-QGDLRRAITYLQGAAR 262 (345)
Q Consensus 196 -~~l~~~l~~r~~--~i~~~~~~--~~~~~~~l~~~~~----~~~---~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~ 262 (345)
..+.+.+.+|+. .+.++|+. .+++..++..++. ..+ ..+++++++.+..++ .||+|.+.+.++.++.
T Consensus 154 ~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~ 233 (304)
T 1ojl_A 154 AGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVV 233 (304)
T ss_dssp HTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHH
T ss_pred hCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 135677888876 46677776 4666666655443 333 468999999999987 9999999999999887
Q ss_pred Hh-CCCCCHHHHHHh
Q 019145 263 LF-GSSITSKDLISV 276 (345)
Q Consensus 263 ~~-~~~it~~~v~~~ 276 (345)
.+ +..|+.+++...
T Consensus 234 ~~~~~~i~~~~l~~~ 248 (304)
T 1ojl_A 234 LLTGEYISERELPLA 248 (304)
T ss_dssp HCCSSSBCGGGSCGG
T ss_pred hCCCCcccHHhhhhh
Confidence 76 456887777543
No 55
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.78 E-value=2e-19 Score=169.92 Aligned_cols=215 Identities=21% Similarity=0.252 Sum_probs=139.5
Q ss_pred ccccccHHHHHHHHHHHHc------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHH
Q 019145 61 KDVAHQEEVVRVLTNTLET------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKI 134 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (345)
++++|.+++...+...+.. ...++++|+||||||||+++++++..+ ...+..+++........+....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l------~~~~~~i~~~~~~~~~~~~g~~ 154 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL------GRKFVRISLGGVRDESEIRGHR 154 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH------TCEEEEECCCC-----------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc------CCCeEEEEecccchhhhhhhHH
Confidence 4578988888777655432 234468999999999999999999998 5567777665422211111100
Q ss_pred HHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHH----HHHHHHHHHhhcC---------------CceEEEEecCcc
Q 019145 135 KTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED----AQNALRRTMETYS---------------KVTRFFFICNYI 195 (345)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~----~~~~l~~~le~~~---------------~~~~ii~~~n~~ 195 (345)
..+....................++++||++.++.+ .++.|++.++... .++.+|+++|..
T Consensus 155 ~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~ 234 (543)
T 3m6a_A 155 RTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNL 234 (543)
T ss_dssp ---------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSST
T ss_pred HHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCcc
Confidence 000000000000000000113359999999999876 4578888886432 457889999999
Q ss_pred cccchhhhccceeEEecCCCHHHHHHHHHHHH-----HHh-----CCCCCHHHHHHHHHhc--CCCHHHHHHHHHHHHHH
Q 019145 196 SRIIEPLASRCAKFRFKPLSEEVMSSRVLHIC-----NEE-----GLNLDAEALSTLSSIS--QGDLRRAITYLQGAARL 263 (345)
Q Consensus 196 ~~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~-----~~~-----~~~i~~~~~~~l~~~s--~g~~r~~~~~l~~~~~~ 263 (345)
..+++++++||.++.|++|+.++...++...+ +.. ++.++++++..+++.. .|++|.+.+.++.++..
T Consensus 235 ~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~ 314 (543)
T 3m6a_A 235 ATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICRK 314 (543)
T ss_dssp TTSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHH
T ss_pred ccCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHHH
Confidence 99999999999999999999999999988865 223 3467899999988744 37888888877665543
Q ss_pred h------C----CCCCHHHHHHhhCCCC
Q 019145 264 F------G----SSITSKDLISVSGVIP 281 (345)
Q Consensus 264 ~------~----~~it~~~v~~~~~~~~ 281 (345)
+ + ..||.+++.++++...
T Consensus 315 aa~~~~~~~~~~~~It~~~l~~~Lg~~~ 342 (543)
T 3m6a_A 315 AAKAIVAEERKRITVTEKNLQDFIGKRI 342 (543)
T ss_dssp HHHHHHTTCCSCCEECTTTTHHHHCSCC
T ss_pred HHHHHHhcCCcceecCHHHHHHHhCCcc
Confidence 2 1 2488888888877543
No 56
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.78 E-value=7.4e-20 Score=158.27 Aligned_cols=206 Identities=19% Similarity=0.167 Sum_probs=139.7
Q ss_pred hhCCCCCccccccHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeec
Q 019145 54 KYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 121 (345)
Q Consensus 54 ~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 121 (345)
++.+.+|++++|++..+..+...+.. ....+++|+||||||||++|+++++++ ..+++.+++
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~------~~~~~~v~~ 77 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA------HVPFFSMGG 77 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH------TCCCCCCCS
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh------CCCEEEech
Confidence 45567899999998888877776641 223459999999999999999999998 345555555
Q ss_pred CCccc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHH---------------HHHHHHHHHh
Q 019145 122 SDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED---------------AQNALRRTME 180 (345)
Q Consensus 122 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~---------------~~~~l~~~le 180 (345)
..... ...+...+..... ....+|+|||+|.+... .++.|+..++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~a~~--------------~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 143 (268)
T 2r62_A 78 SSFIEMFVGLGASRVRDLFETAKK--------------QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMD 143 (268)
T ss_dssp CTTTTSCSSSCSSSSSTTHHHHHH--------------SCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTT
T ss_pred HHHHHhhcchHHHHHHHHHHHHHh--------------cCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhh
Confidence 43211 1111122222111 12359999999998643 2345666665
Q ss_pred hcC---CceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-CHHHH
Q 019145 181 TYS---KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQG-DLRRA 253 (345)
Q Consensus 181 ~~~---~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g-~~r~~ 253 (345)
... ..+.+|+++|.+..+++++.+ |+. .+.|++|+.++...+++..++...+. ++..+..+++.+.| ..+.+
T Consensus 144 ~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~g~dl 222 (268)
T 2r62_A 144 GFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAGADL 222 (268)
T ss_dssp CSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCSSCHHHH
T ss_pred CcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCCCCHHHH
Confidence 432 236788888998888889988 664 78999999999999998887643332 22236667777766 45566
Q ss_pred HHHHHHHHHHh----CCCCCHHHHHHhhCCC
Q 019145 254 ITYLQGAARLF----GSSITSKDLISVSGVI 280 (345)
Q Consensus 254 ~~~l~~~~~~~----~~~it~~~v~~~~~~~ 280 (345)
.+.++.++..+ +..|+.+++.+++...
T Consensus 223 ~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~ 253 (268)
T 2r62_A 223 ANIINEAALLAGRNNQKEVRQQHLKEAVERG 253 (268)
T ss_dssp HHHHHHHHHTTSSSCCCSCCHHHHHTSCTTC
T ss_pred HHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 67777666554 3469999998877653
No 57
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.77 E-value=2.4e-18 Score=140.78 Aligned_cols=165 Identities=19% Similarity=0.185 Sum_probs=117.3
Q ss_pred cchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC----CCCceeeeecCC
Q 019145 48 SQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSRVLELNASD 123 (345)
Q Consensus 48 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~----~~~~~~~~~~~~ 123 (345)
..+|.++++|..|++++|+++.+..+..++..+...+++|+||||||||++++.+++.+.+... .+..++.+++..
T Consensus 9 ~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (195)
T 1jbk_A 9 TIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA 88 (195)
T ss_dssp EEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH
T ss_pred hHHHHHHHhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH
Confidence 4579999999999999999999999999998877778999999999999999999998743211 134555555422
Q ss_pred c----cchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------HHHHHHHHHHhhcCCceEEEEe
Q 019145 124 D----RGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------DAQNALRRTMETYSKVTRFFFI 191 (345)
Q Consensus 124 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------~~~~~l~~~le~~~~~~~ii~~ 191 (345)
. .........+......... .....+|+|||++.+.. ...+.+..+++. ..+.+|++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~ 157 (195)
T 1jbk_A 89 LVAGAKYRGEFEERLKGVLNDLAK---------QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGA 157 (195)
T ss_dssp HHTTTCSHHHHHHHHHHHHHHHHH---------STTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEE
T ss_pred HhccCCccccHHHHHHHHHHHHhh---------cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEe
Confidence 1 1111122222222211100 02346999999999853 236667777765 45667888
Q ss_pred cCccc-----ccchhhhccceeEEecCCCHHHHHHHH
Q 019145 192 CNYIS-----RIIEPLASRCAKFRFKPLSEEVMSSRV 223 (345)
Q Consensus 192 ~n~~~-----~l~~~l~~r~~~i~~~~~~~~~~~~~l 223 (345)
++... .+.+++.+||..+.|.+|+.+++.+++
T Consensus 158 ~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 158 TTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred CCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 87665 578999999999999999999987764
No 58
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.76 E-value=8.7e-18 Score=167.27 Aligned_cols=205 Identities=17% Similarity=0.188 Sum_probs=142.9
Q ss_pred chhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCceeeeecCCc
Q 019145 49 QPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNASDD 124 (345)
Q Consensus 49 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~----~~~~~~~~~~~~~~ 124 (345)
.+|+++++|..|++++|+++.+..+...+..+..++++|+||||||||++++.+++.+.+.. ..+..++.+++...
T Consensus 158 ~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l 237 (854)
T 1qvr_A 158 IDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSL 237 (854)
T ss_dssp EEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---
T ss_pred HhHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHh
Confidence 47999999999999999999999999999888888899999999999999999999874311 12566777776543
Q ss_pred cch----HHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC--------HHHHHHHHHHHhhcCCceEEEEec
Q 019145 125 RGI----NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------EDAQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 125 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~--------~~~~~~l~~~le~~~~~~~ii~~~ 192 (345)
... ......+......... .....+|||||+|.+. .+..+.|..+++. ..+.+|.++
T Consensus 238 ~~g~~~~g~~~~~l~~~~~~~~~---------~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at 306 (854)
T 1qvr_A 238 LAGAKYRGEFEERLKAVIQEVVQ---------SQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGAT 306 (854)
T ss_dssp --------CHHHHHHHHHHHHHT---------TCSSEEEEECCC-------------------HHHHHT--TCCCEEEEE
T ss_pred hccCccchHHHHHHHHHHHHHHh---------cCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEec
Confidence 211 1111222222111111 0134699999999986 3455678888865 455677777
Q ss_pred Cccc----ccchhhhccceeEEecCCCHHHHHHHHHHHHH----HhCCCCCHHHHHHHHHhcCC------CHHHHHHHHH
Q 019145 193 NYIS----RIIEPLASRCAKFRFKPLSEEVMSSRVLHICN----EEGLNLDAEALSTLSSISQG------DLRRAITYLQ 258 (345)
Q Consensus 193 n~~~----~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~----~~~~~i~~~~~~~l~~~s~g------~~r~~~~~l~ 258 (345)
+... .+.+++.+||..+.|++|+.++...+++..+. .+++.++++++..+++.+.| .+..++..++
T Consensus 307 ~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lld 386 (854)
T 1qvr_A 307 TLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLID 386 (854)
T ss_dssp CHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHH
T ss_pred CchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHH
Confidence 6553 36899999999999999999999999987665 45788999999999987733 3788888888
Q ss_pred HHHHHh
Q 019145 259 GAARLF 264 (345)
Q Consensus 259 ~~~~~~ 264 (345)
.++...
T Consensus 387 ea~a~~ 392 (854)
T 1qvr_A 387 EAAARL 392 (854)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776543
No 59
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.76 E-value=1.6e-17 Score=163.76 Aligned_cols=220 Identities=16% Similarity=0.148 Sum_probs=155.9
Q ss_pred cCcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC----CCCceeeeec
Q 019145 46 QSSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSRVLELNA 121 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~----~~~~~~~~~~ 121 (345)
.-..+|+++++|..|++++|++..+..+...+......+++|+||||||||++++.+++.+.+... .+..++.++.
T Consensus 171 ~~~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~ 250 (758)
T 1r6b_X 171 NFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_dssp SSSCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCC
T ss_pred HHhHhHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcH
Confidence 455689999999999999999999999999998888888999999999999999999998743221 2334444443
Q ss_pred CCcc----chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCC---------CHHHHHHHHHHHhhcCCceEE
Q 019145 122 SDDR----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM---------TEDAQNALRRTMETYSKVTRF 188 (345)
Q Consensus 122 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l---------~~~~~~~l~~~le~~~~~~~i 188 (345)
.... ........+........ .....+|||||++.+ ..+..+.|..+++. ..+.+
T Consensus 251 ~~l~~~~~~~g~~e~~l~~~~~~~~----------~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~~~~ 318 (758)
T 1r6b_X 251 GSLLAGTKYRGDFEKRFKALLKQLE----------QDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRV 318 (758)
T ss_dssp C---CCCCCSSCHHHHHHHHHHHHS----------SSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCCEE
T ss_pred HHHhccccccchHHHHHHHHHHHHH----------hcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CCeEE
Confidence 2211 11112222222221111 113469999999998 23445556566654 45667
Q ss_pred EEecCccc-----ccchhhhccceeEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhcCC------CHHHH
Q 019145 189 FFICNYIS-----RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSISQG------DLRRA 253 (345)
Q Consensus 189 i~~~n~~~-----~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~s~g------~~r~~ 253 (345)
|.+++... ..++++.+||..+.|++|+.++...++...+.. +++.++++++..++..+.| .+..+
T Consensus 319 I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~ 398 (758)
T 1r6b_X 319 IGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_dssp EEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHH
T ss_pred EEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHH
Confidence 77776532 456889999999999999999999999887764 6888999999999887643 45577
Q ss_pred HHHHHHHHHHh--------CCCCCHHHHHHhh
Q 019145 254 ITYLQGAARLF--------GSSITSKDLISVS 277 (345)
Q Consensus 254 ~~~l~~~~~~~--------~~~it~~~v~~~~ 277 (345)
+..++.++... ...|+.+++.+++
T Consensus 399 i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~ 430 (758)
T 1r6b_X 399 IDVIDEAGARARLMPVSKRKKTVNVADIESVV 430 (758)
T ss_dssp HHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccCCccCHHHHHHHH
Confidence 77776665432 2458888887764
No 60
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.75 E-value=4.8e-17 Score=151.13 Aligned_cols=190 Identities=18% Similarity=0.173 Sum_probs=137.3
Q ss_pred hhhCCCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeee
Q 019145 53 EKYRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL 119 (345)
Q Consensus 53 ~~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 119 (345)
+...+..|++++|.+..++.+.+++.. ....++||+||||||||++|+++++++ +.+++.+
T Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~------~~~fv~v 269 (489)
T 3hu3_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET------GAFFFLI 269 (489)
T ss_dssp HHHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC------SSEEEEE
T ss_pred cccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh------CCCEEEE
Confidence 456778999999999999988887753 344569999999999999999999997 6788888
Q ss_pred ecCCccc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHhhc
Q 019145 120 NASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETY 182 (345)
Q Consensus 120 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le~~ 182 (345)
++....+ ...+...+..... ....+|||||+|.+. ...++.|+..++..
T Consensus 270 n~~~l~~~~~g~~~~~~~~~f~~A~~--------------~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~ 335 (489)
T 3hu3_A 270 NGPEIMSKLAGESESNLRKAFEEAEK--------------NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGL 335 (489)
T ss_dssp EHHHHHTSCTTHHHHHHHHHHHHHHH--------------TCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHS
T ss_pred EchHhhhhhcchhHHHHHHHHHHHHh--------------cCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhcc
Confidence 8753211 1122222222211 124699999997663 35678899999854
Q ss_pred --CCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC-HHHHHHH
Q 019145 183 --SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD-LRRAITY 256 (345)
Q Consensus 183 --~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~-~r~~~~~ 256 (345)
...+.+|.+||.+..+.+++.+ |+. .+.|.+|+.++..++++.+++...+. .+..+..++..+.|. .+.+.+.
T Consensus 336 ~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 336 KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp CTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHHHHHTCTTCCHHHHHHH
T ss_pred ccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHHHHHHHccCCcHHHHHHH
Confidence 3467788899999999999998 665 79999999999999999887654443 233467788888774 4444444
Q ss_pred HHHHHHH
Q 019145 257 LQGAARL 263 (345)
Q Consensus 257 l~~~~~~ 263 (345)
+..++..
T Consensus 415 ~~~A~~~ 421 (489)
T 3hu3_A 415 CSEAALQ 421 (489)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4555443
No 61
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.74 E-value=1e-16 Score=137.33 Aligned_cols=207 Identities=23% Similarity=0.238 Sum_probs=136.7
Q ss_pred hhhCCCCCccccccHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeee
Q 019145 53 EKYRPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (345)
Q Consensus 53 ~~~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 120 (345)
....+.+|++++|.++.+..+.+.... ....+++|+|||||||||++++++..+ ...++.++
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~------~~~~i~~~ 81 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA------RVPFITAS 81 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT------TCCEEEEE
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh------CCCEEEee
Confidence 345566899999998888776655432 113359999999999999999999987 35566666
Q ss_pred cCCccc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------------HHHHHHHHHHhhcC-
Q 019145 121 ASDDRG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYS- 183 (345)
Q Consensus 121 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------------~~~~~l~~~le~~~- 183 (345)
+.+... .......+........ .....++++||++.+.. ...+.++..++...
T Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~----------~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 151 (254)
T 1ixz_A 82 GSDFVEMFVGVGAARVRDLFETAK----------RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 151 (254)
T ss_dssp HHHHHHSCTTHHHHHHHHHHHHHT----------TSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH----------hcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC
Confidence 532110 0011111111111110 01236999999976521 12345555555432
Q ss_pred -CceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhcCCCH-HHHHHHH
Q 019145 184 -KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQGDL-RRAITYL 257 (345)
Q Consensus 184 -~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~s~g~~-r~~~~~l 257 (345)
....++.++|.+..+++++.+ |+. .+.+++|+.++..++++..++ +..+++++ +..+++.+.|+. +.+.+.+
T Consensus 152 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~G~~~~dl~~~~ 229 (254)
T 1ixz_A 152 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLL 229 (254)
T ss_dssp TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHH
T ss_pred CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc--CCCCCcccCHHHHHHHcCCCCHHHHHHHH
Confidence 234556677888999999998 554 789999999999999987764 45555554 888999998866 6777777
Q ss_pred HHHHHHh---C-CCCCHHHHHHhh
Q 019145 258 QGAARLF---G-SSITSKDLISVS 277 (345)
Q Consensus 258 ~~~~~~~---~-~~it~~~v~~~~ 277 (345)
..++..+ + ..||.+++.+++
T Consensus 230 ~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 230 NEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHHhcCCCcCHHHHHHHh
Confidence 7666543 2 469999988764
No 62
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.74 E-value=1.9e-17 Score=143.36 Aligned_cols=178 Identities=12% Similarity=0.187 Sum_probs=120.8
Q ss_pred ccccccHHHHHHH-------HHHHH---cCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc---h
Q 019145 61 KDVAHQEEVVRVL-------TNTLE---TANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG---I 127 (345)
Q Consensus 61 ~~~~g~~~~~~~l-------~~~l~---~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~---~ 127 (345)
..++|+...+..+ ...+. .....+++|+||||||||++|+++++.+ +.+++.+++++... .
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~------~~~~~~i~~~~~~~g~~~ 106 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES------NFPFIKICSPDKMIGFSE 106 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH------TCSEEEEECGGGCTTCCH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh------CCCEEEEeCHHHhcCCch
Confidence 3466665544333 33444 2334459999999999999999999997 56778787654211 1
Q ss_pred ----HHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCC----------CHHHHHHHHHHHhh---cCCceEEEE
Q 019145 128 ----NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSM----------TEDAQNALRRTMET---YSKVTRFFF 190 (345)
Q Consensus 128 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l----------~~~~~~~l~~~le~---~~~~~~ii~ 190 (345)
..+...+.... .....+|+|||++.+ ....++.|...++. ....+.+|+
T Consensus 107 ~~~~~~~~~~~~~~~--------------~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ 172 (272)
T 1d2n_A 107 TAKCQAMKKIFDDAY--------------KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIG 172 (272)
T ss_dssp HHHHHHHHHHHHHHH--------------TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHH--------------hcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEE
Confidence 11222222211 124579999999886 45566777777764 234566777
Q ss_pred ecCcccccch-hhhccc-eeEEecCCCH-HHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCC-----CHHHHHHHHHHHHH
Q 019145 191 ICNYISRIIE-PLASRC-AKFRFKPLSE-EVMSSRVLHICNEEGLNLDAEALSTLSSISQG-----DLRRAITYLQGAAR 262 (345)
Q Consensus 191 ~~n~~~~l~~-~l~~r~-~~i~~~~~~~-~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g-----~~r~~~~~l~~~~~ 262 (345)
++|.+..+.+ .+.+|+ ..+.+++++. +++..++.. .+ .++++.+..+++.+.| |+|.+++.++.+..
T Consensus 173 ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~----~~-~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~ 247 (272)
T 1d2n_A 173 TTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALEL----LG-NFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ 247 (272)
T ss_dssp EESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHH----HT-CSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT
T ss_pred ecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHh----cC-CCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh
Confidence 8888877666 677785 4789988877 666666543 22 4789999999999987 99999999988764
Q ss_pred H
Q 019145 263 L 263 (345)
Q Consensus 263 ~ 263 (345)
.
T Consensus 248 ~ 248 (272)
T 1d2n_A 248 M 248 (272)
T ss_dssp S
T ss_pred h
Confidence 3
No 63
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.74 E-value=4.1e-17 Score=151.21 Aligned_cols=204 Identities=23% Similarity=0.234 Sum_probs=142.5
Q ss_pred CCCCCccccccHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC
Q 019145 56 RPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (345)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (345)
.+.+|++++|+++.+..+.+.+.. ..+.+++|+||||||||+++++++..+ ...++.+++.+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~------~~~~i~i~g~~ 99 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA------RVPFITASGSD 99 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT------TCCEEEEEGGG
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh------CCCEEEEehhH
Confidence 677999999999998777766532 112359999999999999999999997 46788888764
Q ss_pred ccch--HHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------------HHHHHHHHHHhhcC--Cc
Q 019145 124 DRGI--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYS--KV 185 (345)
Q Consensus 124 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------------~~~~~l~~~le~~~--~~ 185 (345)
.... ......+....... ......+++|||++.+.. ...+.++..++... ..
T Consensus 100 ~~~~~~g~~~~~v~~lfq~a----------~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~ 169 (499)
T 2dhr_A 100 FVEMFVGVGAARVRDLFETA----------KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 169 (499)
T ss_dssp GTSSCTTHHHHHHHHHTTTS----------SSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCC
T ss_pred HHHhhhhhHHHHHHHHHHHH----------HhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCcc
Confidence 3211 11111121111110 011236999999987631 23455666665432 34
Q ss_pred eEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhcCCCH-HHHHHHHHHH
Q 019145 186 TRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQGDL-RRAITYLQGA 260 (345)
Q Consensus 186 ~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~s~g~~-r~~~~~l~~~ 260 (345)
+.++.++|.++.+++++.+ |+. .+.+++|+.++..++++..++ ++.+++++ +..++..+.|+. +.+.+.+..+
T Consensus 170 viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~A 247 (499)
T 2dhr_A 170 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEA 247 (499)
T ss_dssp CEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS--SSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHH
T ss_pred EEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 5677778988889999988 454 799999999999999976653 45565554 888999999987 7888888877
Q ss_pred HHHhC----CCCCHHHHHHhh
Q 019145 261 ARLFG----SSITSKDLISVS 277 (345)
Q Consensus 261 ~~~~~----~~it~~~v~~~~ 277 (345)
+..+. ..|+.+++.+++
T Consensus 248 a~~A~~~~~~~It~~dl~~al 268 (499)
T 2dhr_A 248 ALLAAREGRRKITMKDLEEAA 268 (499)
T ss_dssp HHHHTTTCCSSCCSHHHHHHH
T ss_pred HHHHHHhCCCccCHHHHHHHH
Confidence 76652 459999887765
No 64
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.74 E-value=4.3e-17 Score=160.57 Aligned_cols=197 Identities=16% Similarity=0.194 Sum_probs=143.0
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCC----CCCCceeeeecC
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPE----LYKSRVLELNAS 122 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~----~~~~~~~~~~~~ 122 (345)
-..+|.++++|..++.++|++..+..+..++.....+++||+||||||||++|+++++.+.+.. ..+..++.+++.
T Consensus 166 ~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g 245 (758)
T 3pxi_A 166 LARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG 245 (758)
T ss_dssp SCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---
T ss_pred HHHHHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEeccc
Confidence 3458999999999999999999999999999988888999999999999999999999984321 234556666651
Q ss_pred Cc-c--chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCccc---
Q 019145 123 DD-R--GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS--- 196 (345)
Q Consensus 123 ~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~--- 196 (345)
.. . ....+...+..... ....+|||| ...+.++.|+..++. ..+.+|.+||...
T Consensus 246 ~~~~G~~e~~l~~~~~~~~~--------------~~~~iLfiD----~~~~~~~~L~~~l~~--~~v~~I~at~~~~~~~ 305 (758)
T 3pxi_A 246 TKYRGEFEDRLKKVMDEIRQ--------------AGNIILFID----AAIDASNILKPSLAR--GELQCIGATTLDEYRK 305 (758)
T ss_dssp -------CTTHHHHHHHHHT--------------CCCCEEEEC----C--------CCCTTS--SSCEEEEECCTTTTHH
T ss_pred ccccchHHHHHHHHHHHHHh--------------cCCEEEEEc----CchhHHHHHHHHHhc--CCEEEEeCCChHHHHH
Confidence 11 0 01123333333221 134599999 444677778888874 4677888887766
Q ss_pred --ccchhhhccceeEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHhcC------CCHHHHHHHHHHHHHH
Q 019145 197 --RIIEPLASRCAKFRFKPLSEEVMSSRVLHICNE----EGLNLDAEALSTLSSISQ------GDLRRAITYLQGAARL 263 (345)
Q Consensus 197 --~l~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~~~~l~~~s~------g~~r~~~~~l~~~~~~ 263 (345)
.+++++.+||..+.|++|+.+++..+++..+.. +++.++++++..+++.+. ..++.++..++.++..
T Consensus 306 ~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~ 384 (758)
T 3pxi_A 306 YIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSK 384 (758)
T ss_dssp HHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHH
T ss_pred HhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHH
Confidence 688999999999999999999999999977665 678899999999988763 3467888888776543
No 65
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.74 E-value=3.1e-17 Score=148.72 Aligned_cols=205 Identities=19% Similarity=0.206 Sum_probs=136.8
Q ss_pred cccccHHHHHHHHHHHH----c--------------------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC
Q 019145 62 DVAHQEEVVRVLTNTLE----T--------------------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL 111 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~----~--------------------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~ 111 (345)
.++|++.+++.+..++. . ....+++|+||||||||++|+++++.+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l----- 96 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL----- 96 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT-----
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh-----
Confidence 47899999988887762 1 124569999999999999999999998
Q ss_pred CCCceeeeecCCccch----HHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHH--------------HHH
Q 019145 112 YKSRVLELNASDDRGI----NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--------------AQN 173 (345)
Q Consensus 112 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~--------------~~~ 173 (345)
+.+++.+++...... ......+......... .......++|+|||++.+... .++
T Consensus 97 -~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~------~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~ 169 (376)
T 1um8_A 97 -DIPIAISDATSLTEAGYVGEDVENILTRLLQASDW------NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQ 169 (376)
T ss_dssp -TCCEEEEEGGGCC--------CTHHHHHHHHHTTT------CHHHHTTSEEEEETGGGC--------------CHHHHH
T ss_pred -CCCEEEecchhhhhcCcCCccHHHHHHHHHhhccc------hhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHH
Confidence 566777776542211 1111112221111000 000013469999999999877 899
Q ss_pred HHHHHHhhcC---------------------CceEEEEecCc--------------------------------------
Q 019145 174 ALRRTMETYS---------------------KVTRFFFICNY-------------------------------------- 194 (345)
Q Consensus 174 ~l~~~le~~~---------------------~~~~ii~~~n~-------------------------------------- 194 (345)
.|+++++... .++.+|+++|.
T Consensus 170 ~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 249 (376)
T 1um8_A 170 ALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTH 249 (376)
T ss_dssp HHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHH
T ss_pred HHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHH
Confidence 9999998541 33456666541
Q ss_pred ---ccccchhhhccc-eeEEecCCCHHHHHHHHHH----HHH-------H--hCCCCCHHHHHHHHHhcC---CCHHHHH
Q 019145 195 ---ISRIIEPLASRC-AKFRFKPLSEEVMSSRVLH----ICN-------E--EGLNLDAEALSTLSSISQ---GDLRRAI 254 (345)
Q Consensus 195 ---~~~l~~~l~~r~-~~i~~~~~~~~~~~~~l~~----~~~-------~--~~~~i~~~~~~~l~~~s~---g~~r~~~ 254 (345)
...+.+++.+|+ .++.|+|++.+++..++.. ++. . .++.+++++++.|++.+. |++|.+.
T Consensus 250 ~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~ 329 (376)
T 1um8_A 250 DLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLR 329 (376)
T ss_dssp HHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHH
T ss_pred HHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHH
Confidence 113568889999 4899999999999998862 211 1 235689999999999865 9999999
Q ss_pred HHHHHHHHHh-----C---C--CCCHHHHHHhhC
Q 019145 255 TYLQGAARLF-----G---S--SITSKDLISVSG 278 (345)
Q Consensus 255 ~~l~~~~~~~-----~---~--~it~~~v~~~~~ 278 (345)
+.++.+.... + . .||.++|.+...
T Consensus 330 ~~le~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~ 363 (376)
T 1um8_A 330 AIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAE 363 (376)
T ss_dssp HHHHHHHHHHHHTGGGGTTSEEEECHHHHTTSSC
T ss_pred HHHHHHHHHHHhhccCCCCCEEEEeHHHhcCCCC
Confidence 9998876531 1 1 388888877543
No 66
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.73 E-value=4.7e-17 Score=160.32 Aligned_cols=185 Identities=20% Similarity=0.300 Sum_probs=135.7
Q ss_pred ccccccHHHHHHHHHHHHcCC-------CC--cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHH-
Q 019145 61 KDVAHQEEVVRVLTNTLETAN-------CP--HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVV- 130 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~-------~~--~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~- 130 (345)
..++|++..+..+...+.... .+ +++|+||||||||++|+++++.+... +.+++.++++........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~---~~~~i~i~~s~~~~~~~~~ 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD---EESMIRIDMSEYMEKHSTS 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC---TTCEEEEEGGGGCSSCCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC---CcceEEEechhcccccccc
Confidence 468899999988888876422 11 59999999999999999999998432 457888887653322111
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc-----------CCceEEEEecCcccc--
Q 019145 131 RTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY-----------SKVTRFFFICNYISR-- 197 (345)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~-----------~~~~~ii~~~n~~~~-- 197 (345)
...+...... .++++|+|||++.++.+.++.|++++++. ..++++|++||....
T Consensus 568 ~~~l~~~~~~-------------~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~ 634 (758)
T 3pxi_A 568 GGQLTEKVRR-------------KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEK 634 (758)
T ss_dssp ---CHHHHHH-------------CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCC
T ss_pred cchhhHHHHh-------------CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhH
Confidence 0011111111 23469999999999999999999999973 346789999985332
Q ss_pred ----------cchhhhccc-eeEEecCCCHHHHHHHHHHHHHHh---------CCCCCHHHHHHHHHh---cCCCHHHHH
Q 019145 198 ----------IIEPLASRC-AKFRFKPLSEEVMSSRVLHICNEE---------GLNLDAEALSTLSSI---SQGDLRRAI 254 (345)
Q Consensus 198 ----------l~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~---------~~~i~~~~~~~l~~~---s~g~~r~~~ 254 (345)
+.+.+.+|+ .++.|+|++.+++..++...+... .+.+++++++.|++. ..|+.|.+.
T Consensus 635 ~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~ 714 (758)
T 3pxi_A 635 DKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLR 714 (758)
T ss_dssp HHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHH
T ss_pred HHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHH
Confidence 778999999 599999999999999998877542 346899999999875 368888888
Q ss_pred HHHHHHH
Q 019145 255 TYLQGAA 261 (345)
Q Consensus 255 ~~l~~~~ 261 (345)
+.++...
T Consensus 715 ~~i~~~v 721 (758)
T 3pxi_A 715 RAIQKHV 721 (758)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 8887654
No 67
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.72 E-value=6.7e-17 Score=159.42 Aligned_cols=182 Identities=21% Similarity=0.241 Sum_probs=135.1
Q ss_pred ccccccHHHHHHHHHHHHcCC---------CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchH---
Q 019145 61 KDVAHQEEVVRVLTNTLETAN---------CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGIN--- 128 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~---------~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~--- 128 (345)
..++|++..+..+...+.... ..+++|+||||||||++|+++++.+ +..++.++++......
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l------~~~~~~i~~s~~~~~~~~~ 531 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL------GIELLRFDMSEYMERHTVS 531 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH------TCEEEEEEGGGCSSSSCCS
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh------cCCEEEEechhhcchhhHh
Confidence 468899999988877775421 1258999999999999999999998 4567777765422110
Q ss_pred ------------HHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------Cc
Q 019145 129 ------------VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KV 185 (345)
Q Consensus 129 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~ 185 (345)
.....+..... ..++.+|+|||++.++++.++.|++++++.. .+
T Consensus 532 ~l~g~~~g~~g~~~~~~l~~~~~-------------~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~ 598 (758)
T 1r6b_X 532 RLIGAPPGYVGFDQGGLLTDAVI-------------KHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRN 598 (758)
T ss_dssp SSCCCCSCSHHHHHTTHHHHHHH-------------HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTT
T ss_pred hhcCCCCCCcCccccchHHHHHH-------------hCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCC
Confidence 00011111111 1245799999999999999999999999642 35
Q ss_pred eEEEEecCccc-------------------------ccchhhhccce-eEEecCCCHHHHHHHHHHHHHHh---------
Q 019145 186 TRFFFICNYIS-------------------------RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEE--------- 230 (345)
Q Consensus 186 ~~ii~~~n~~~-------------------------~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~--------- 230 (345)
+.+|+++|... .+.+++.+|+. ++.|+|++.+++..++..++.+.
T Consensus 599 ~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~ 678 (758)
T 1r6b_X 599 VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGV 678 (758)
T ss_dssp EEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTE
T ss_pred eEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 67888988632 57789999994 89999999999999999887632
Q ss_pred CCCCCHHHHHHHHHhc---CCCHHHHHHHHHHHH
Q 019145 231 GLNLDAEALSTLSSIS---QGDLRRAITYLQGAA 261 (345)
Q Consensus 231 ~~~i~~~~~~~l~~~s---~g~~r~~~~~l~~~~ 261 (345)
.+.+++++++.|++.+ +++.|.+.+.++...
T Consensus 679 ~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~ 712 (758)
T 1r6b_X 679 SLEVSQEARNWLAEKGYDRAMGARPMARVIQDNL 712 (758)
T ss_dssp EEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHH
T ss_pred EEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHH
Confidence 3468999999999876 455888888777665
No 68
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.72 E-value=2.1e-17 Score=134.49 Aligned_cols=158 Identities=16% Similarity=0.176 Sum_probs=110.7
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCC----CCCceeeeecC
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPEL----YKSRVLELNAS 122 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~----~~~~~~~~~~~ 122 (345)
-..+|.++++|..|++++|++..+..+..++......+++|+||||||||++++.+++.+..... .+..++.+++.
T Consensus 8 ~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (187)
T 2p65_A 8 YSRDLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLS 87 (187)
T ss_dssp TEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHH
T ss_pred HHHHHHHHHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHH
Confidence 45589999999999999999999999999998877778999999999999999999998743211 13445555432
Q ss_pred Ccc----chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC---------HHHHHHHHHHHhhcCCceEEE
Q 019145 123 DDR----GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT---------EDAQNALRRTMETYSKVTRFF 189 (345)
Q Consensus 123 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~---------~~~~~~l~~~le~~~~~~~ii 189 (345)
... ........+......... .....+|+|||++.+. ....+.|...++. ..+.+|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~--~~~~ii 156 (187)
T 2p65_A 88 SLIAGAKYRGDFEERLKSILKEVQD---------AEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR--GELRCI 156 (187)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHH---------TTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT--TCSCEE
T ss_pred HhhcCCCchhHHHHHHHHHHHHHHh---------cCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc--CCeeEE
Confidence 210 111111112221111111 0134699999999986 4456677777765 456688
Q ss_pred EecCccc-----ccchhhhccceeEEecCCC
Q 019145 190 FICNYIS-----RIIEPLASRCAKFRFKPLS 215 (345)
Q Consensus 190 ~~~n~~~-----~l~~~l~~r~~~i~~~~~~ 215 (345)
+++|... .+.+++.+||..+.+.+|+
T Consensus 157 ~~~~~~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 157 GATTVSEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp EEECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred EecCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence 8887654 5789999999999998875
No 69
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.72 E-value=5.5e-16 Score=134.58 Aligned_cols=204 Identities=24% Similarity=0.249 Sum_probs=134.4
Q ss_pred CCCCCccccccHHHHHHHHHHHHc------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC
Q 019145 56 RPKQVKDVAHQEEVVRVLTNTLET------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (345)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (345)
.+.+|++++|.++.+..+.+.... ....+++|+|||||||||++++++..+ ...++.+++.+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~------~~~~i~~~~~~ 108 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA------RVPFITASGSD 108 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT------TCCEEEEEHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc------CCCEEEecHHH
Confidence 567899999998888777665432 112359999999999999999999987 35666666532
Q ss_pred ccc--hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------H---HHHHHHHHHHhhcC--Cc
Q 019145 124 DRG--INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------E---DAQNALRRTMETYS--KV 185 (345)
Q Consensus 124 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~---~~~~~l~~~le~~~--~~ 185 (345)
... .......+......... ....++++||++.+. . ...+.++..++... ..
T Consensus 109 ~~~~~~~~~~~~i~~~~~~~~~----------~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~ 178 (278)
T 1iy2_A 109 FVEMFVGVGAARVRDLFETAKR----------HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 178 (278)
T ss_dssp HHHSTTTHHHHHHHHHHHHHHT----------SCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCC
T ss_pred HHHHHhhHHHHHHHHHHHHHHh----------cCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCC
Confidence 110 00111111111111100 123699999997652 1 12233444444322 23
Q ss_pred eEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHH-HHHHHHhcCCCH-HHHHHHHHHH
Q 019145 186 TRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEA-LSTLSSISQGDL-RRAITYLQGA 260 (345)
Q Consensus 186 ~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~-~~~l~~~s~g~~-r~~~~~l~~~ 260 (345)
..++.++|.+..+++++.+ |+. .+.|++|+.++..++++..++ +..+++++ +..++..+.|+. +.+.+.+..+
T Consensus 179 ~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a 256 (278)
T 1iy2_A 179 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLNEA 256 (278)
T ss_dssp EEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred EEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc--cCCCCcccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4556678888889999988 554 799999999999999987764 45555554 888999998877 6677777766
Q ss_pred HHHh---C-CCCCHHHHHHhh
Q 019145 261 ARLF---G-SSITSKDLISVS 277 (345)
Q Consensus 261 ~~~~---~-~~it~~~v~~~~ 277 (345)
+..+ + ..|+.+++.+++
T Consensus 257 ~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 257 ALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHhCCCCcCHHHHHHHh
Confidence 6543 2 469999998764
No 70
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.69 E-value=5.8e-17 Score=161.35 Aligned_cols=199 Identities=22% Similarity=0.283 Sum_probs=138.7
Q ss_pred ccccccHHHHHHHHHHHHcCC--------C-CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHH
Q 019145 61 KDVAHQEEVVRVLTNTLETAN--------C-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVR 131 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~--------~-~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (345)
..++|++..+..+...+.... + .+++|+||||||||++|+++++.+.+. +.+++.++++.........
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~---~~~~i~i~~~~~~~~~~~s 634 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT---EEAMIRIDMTEYMEKHAVS 634 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS---GGGEEEECTTTCCSSGGGG
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC---CCcEEEEechhccchhHHH
Confidence 468899999988888876531 1 358999999999999999999998543 3577888876543321111
Q ss_pred HHHHHHHHh-hhcC-CCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCcc---
Q 019145 132 TKIKTFAAV-AVGS-GQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI--- 195 (345)
Q Consensus 132 ~~~~~~~~~-~~~~-~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~--- 195 (345)
..+...... .... +.........++++|+|||++.++.+.++.|++++++.. .++.+|++||..
T Consensus 635 ~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~ 714 (854)
T 1qvr_A 635 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPL 714 (854)
T ss_dssp GC--------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHH
T ss_pred HHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHH
Confidence 111000000 0000 000000001235799999999999999999999999653 356789999861
Q ss_pred -----------------------cccchhhhccce-eEEecCCCHHHHHHHHHHHHHHh---------CCCCCHHHHHHH
Q 019145 196 -----------------------SRIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEE---------GLNLDAEALSTL 242 (345)
Q Consensus 196 -----------------------~~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~---------~~~i~~~~~~~l 242 (345)
..+.+.+.+|+. ++.|.|++.+++..++..++... .+.+++++++.|
T Consensus 715 ~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L 794 (854)
T 1qvr_A 715 ILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFL 794 (854)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHH
T ss_pred HhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHH
Confidence 235678889995 78999999999999988876521 245899999999
Q ss_pred HHhcC---CCHHHHHHHHHHHHH
Q 019145 243 SSISQ---GDLRRAITYLQGAAR 262 (345)
Q Consensus 243 ~~~s~---g~~r~~~~~l~~~~~ 262 (345)
++++. |++|.+.+.++.+..
T Consensus 795 ~~~~~~~~gn~R~L~~~i~~~~~ 817 (854)
T 1qvr_A 795 AERGYDPVFGARPLRRVIQRELE 817 (854)
T ss_dssp HHHHCBTTTBTSTHHHHHHHHTH
T ss_pred HHcCCCCCCChHHHHHHHHHHHH
Confidence 99764 999999999887653
No 71
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.67 E-value=4.3e-16 Score=149.35 Aligned_cols=222 Identities=19% Similarity=0.201 Sum_probs=148.7
Q ss_pred hhhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc------
Q 019145 52 VEKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR------ 125 (345)
Q Consensus 52 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------ 125 (345)
..+|+|..|++++|++.++..+...+..+. +++|+||||||||+++++++..+.... ...+.+.+....
T Consensus 32 ~~~~rp~~l~~i~G~~~~l~~l~~~i~~g~--~vll~Gp~GtGKTtlar~ia~~l~~~~---~~~~~~~~~~~~~~~p~i 106 (604)
T 3k1j_A 32 EIEVPEKLIDQVIGQEHAVEVIKTAANQKR--HVLLIGEPGTGKSMLGQAMAELLPTET---LEDILVFPNPEDENMPRI 106 (604)
T ss_dssp GSCCCSSHHHHCCSCHHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHTSCCSS---CEEEEEECCTTCTTSCEE
T ss_pred cccccccccceEECchhhHhhccccccCCC--EEEEEeCCCCCHHHHHHHHhccCCccc---CCeEEEeCCcccccCCcE
Confidence 458999999999999999999999998874 799999999999999999999873321 111111111000
Q ss_pred ------chHHHHHHHHHHHHh------------------------------------------hhc---------CCC--
Q 019145 126 ------GINVVRTKIKTFAAV------------------------------------------AVG---------SGQ-- 146 (345)
Q Consensus 126 ------~~~~~~~~~~~~~~~------------------------------------------~~~---------~~~-- 146 (345)
....+.+........ ..+ .+.
T Consensus 107 ~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~ 186 (604)
T 3k1j_A 107 KTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGT 186 (604)
T ss_dssp EEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCC
T ss_pred EEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCccc
Confidence 000010100000000 000 000
Q ss_pred ------CCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc---------------------CCceEEEEecCcc--cc
Q 019145 147 ------RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY---------------------SKVTRFFFICNYI--SR 197 (345)
Q Consensus 147 ------~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~---------------------~~~~~ii~~~n~~--~~ 197 (345)
..+....++.+++||||++.+++..++.|++.+++. +.++++|+++|.. ..
T Consensus 187 g~~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~ 266 (604)
T 3k1j_A 187 PAHERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDK 266 (604)
T ss_dssp CGGGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHH
T ss_pred cccccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhh
Confidence 000001124569999999999999999999999842 1356789999876 67
Q ss_pred cchhhhccce----eEEecC---CCHHHHHHHHHHHHHHhC-----CCCCHHHHHHHHHhc---CC-------CHHHHHH
Q 019145 198 IIEPLASRCA----KFRFKP---LSEEVMSSRVLHICNEEG-----LNLDAEALSTLSSIS---QG-------DLRRAIT 255 (345)
Q Consensus 198 l~~~l~~r~~----~i~~~~---~~~~~~~~~l~~~~~~~~-----~~i~~~~~~~l~~~s---~g-------~~r~~~~ 255 (345)
+.+++.+||. .+.|.+ ...+.+..++..++...+ ..++++++..|++++ .| ++|.+.+
T Consensus 267 l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~ 346 (604)
T 3k1j_A 267 MHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGG 346 (604)
T ss_dssp SCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHH
T ss_pred cCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHH
Confidence 9999999995 455543 245567777766554322 578999999998865 55 6999999
Q ss_pred HHHHHHHHh----CCCCCHHHHHHhhC
Q 019145 256 YLQGAARLF----GSSITSKDLISVSG 278 (345)
Q Consensus 256 ~l~~~~~~~----~~~it~~~v~~~~~ 278 (345)
.++.+...+ ...|+.++|.+++.
T Consensus 347 llr~A~~~A~~~~~~~I~~edv~~A~~ 373 (604)
T 3k1j_A 347 IVRAAGDIAVKKGKKYVEREDVIEAVK 373 (604)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcccccHHHHHHHHH
Confidence 998776554 34699999998874
No 72
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.67 E-value=3.8e-15 Score=136.59 Aligned_cols=228 Identities=18% Similarity=0.204 Sum_probs=144.4
Q ss_pred CcchhhhhhCCCCCccccccHHHHHHHHHHH-Hc---C---CCCcEEE--eCCCCCCHHHHHHHHHHHhcCC---CCCCC
Q 019145 47 SSQPWVEKYRPKQVKDVAHQEEVVRVLTNTL-ET---A---NCPHMLF--YGPPGTGKTTTALAIAHQLFGP---ELYKS 114 (345)
Q Consensus 47 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l-~~---~---~~~~lll--~G~~G~GKT~la~~la~~l~~~---~~~~~ 114 (345)
...++...|.| +.++|++..+..+..++ .. + ...+++| +||+|+|||++++.+++.+... ...+.
T Consensus 11 ~~~~~~~~~~p---~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 87 (412)
T 1w5s_A 11 DRRVFDENYIP---PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTV 87 (412)
T ss_dssp CGGGGSTTCCC---SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred cHhhcCCccCC---CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCce
Confidence 33445556655 56899998888887777 42 2 3445889 9999999999999999887321 01134
Q ss_pred ceeeeecCCccchHH-HHHHHHHHHHhhhcCCCCCCC---------CCCCCeEEEEEcCCCCCC------HHHHHHHHHH
Q 019145 115 RVLELNASDDRGINV-VRTKIKTFAAVAVGSGQRRGG---------YPCPPYKIIILDEADSMT------EDAQNALRRT 178 (345)
Q Consensus 115 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~iliiDE~~~l~------~~~~~~l~~~ 178 (345)
.++.+++....+... +...+..+.......+..... .....+.+|+|||++.+. .+.+..+.++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~ 167 (412)
T 1w5s_A 88 KQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRV 167 (412)
T ss_dssp EEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHH
Confidence 566666533222222 222221110000000000000 001245699999999874 3666667777
Q ss_pred HhhcC-----CceEEEEecCccc---ccc---hhhhccce-eEEecCCCHHHHHHHHHHHHHHhCC--CCCHHHHHHHHH
Q 019145 179 METYS-----KVTRFFFICNYIS---RII---EPLASRCA-KFRFKPLSEEVMSSRVLHICNEEGL--NLDAEALSTLSS 244 (345)
Q Consensus 179 le~~~-----~~~~ii~~~n~~~---~l~---~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~--~i~~~~~~~l~~ 244 (345)
+.+.+ ..+.+|++++... .+. +.+.+++. .+.|+|++.+++.+++..++...+. .++++++..+++
T Consensus 168 ~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~ 247 (412)
T 1w5s_A 168 HEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISD 247 (412)
T ss_dssp HHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHH
T ss_pred HHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHH
Confidence 76543 4566777776543 233 44545543 4999999999999999988765433 488999999999
Q ss_pred hcC------CCHHHHHHHHHHHHHHh----CCCCCHHHHHHhh
Q 019145 245 ISQ------GDLRRAITYLQGAARLF----GSSITSKDLISVS 277 (345)
Q Consensus 245 ~s~------g~~r~~~~~l~~~~~~~----~~~it~~~v~~~~ 277 (345)
.++ |++|.+.+.+..+...+ ...++.+++..+.
T Consensus 248 ~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~ 290 (412)
T 1w5s_A 248 VYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAV 290 (412)
T ss_dssp HHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred HHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 999 99999999987765433 2358888776554
No 73
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.66 E-value=5.5e-15 Score=137.18 Aligned_cols=207 Identities=16% Similarity=0.139 Sum_probs=130.0
Q ss_pred ccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHh
Q 019145 61 KDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV 140 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (345)
..++|+++++..+...+..+. +++|+||||||||++|+++++.+.. ...+..+.+... ....+..........
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~~l~~----~~~f~~~~~~~~-t~~dL~G~~~~~~~~ 94 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQN----ARAFEYLMTRFS-TPEEVFGPLSIQALK 94 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGGGBSS----CCEEEEECCTTC-CHHHHHCCBC-----
T ss_pred hhhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHHHHhh----hhHHHHHHHhcC-CHHHhcCcccHHHHh
Confidence 358899999998888887765 7999999999999999999998721 223333333321 111111100000000
Q ss_pred hhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC----------CceEEEEecCcccc---cchhhhccce
Q 019145 141 AVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS----------KVTRFFFICNYISR---IIEPLASRCA 207 (345)
Q Consensus 141 ~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~----------~~~~ii~~~n~~~~---l~~~l~~r~~ 207 (345)
..+.-............+++|||++.++++.++.|+..+++.. +...+|++||.... ..+++.+|+.
T Consensus 95 ~~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLldRF~ 174 (500)
T 3nbx_X 95 DEGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRML 174 (500)
T ss_dssp -----CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHTTCC
T ss_pred hchhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHHHHH
Confidence 0000000000001134599999999999999999999997532 12234777775332 4468999986
Q ss_pred -eEEecCCCH-HHHHHHHHHHH-----------------------HHhCCCCCHHHHHHHHHhc----------CCCHHH
Q 019145 208 -KFRFKPLSE-EVMSSRVLHIC-----------------------NEEGLNLDAEALSTLSSIS----------QGDLRR 252 (345)
Q Consensus 208 -~i~~~~~~~-~~~~~~l~~~~-----------------------~~~~~~i~~~~~~~l~~~s----------~g~~r~ 252 (345)
.+.+++|+. ++...++.... ...++.+++++++.+++.. +.+.|.
T Consensus 175 ~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~ 254 (500)
T 3nbx_X 175 IRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRR 254 (500)
T ss_dssp EEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHH
T ss_pred HHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhH
Confidence 578888876 56666665432 1236778999999988765 568888
Q ss_pred HHHHHHHHHHHh---C-CCCCHHHHH
Q 019145 253 AITYLQGAARLF---G-SSITSKDLI 274 (345)
Q Consensus 253 ~~~~l~~~~~~~---~-~~it~~~v~ 274 (345)
++..+..+...+ | ..|+.+||.
T Consensus 255 ~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 255 WKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp HHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred HHHHHHHHHHHHhhcCCccccchHHH
Confidence 777765443333 4 458999988
No 74
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.66 E-value=3.8e-16 Score=140.86 Aligned_cols=205 Identities=20% Similarity=0.219 Sum_probs=133.2
Q ss_pred cccccHHHHHHHHHHHHc---------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc
Q 019145 62 DVAHQEEVVRVLTNTLET---------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG 126 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~---------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 126 (345)
.++|++.+++.+...+.. ....+++|+||||||||++|+++++.+ +.+++.+++.....
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~------~~~~~~~~~~~l~~ 89 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL------DVPFTMADATTLTE 89 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT------TCCEEEEEHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc------CCCEEEechHHhcc
Confidence 368999999988887731 134569999999999999999999998 67888888754221
Q ss_pred hH----HHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHH--------------HHHHHHHHHhhc------
Q 019145 127 IN----VVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--------------AQNALRRTMETY------ 182 (345)
Q Consensus 127 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~--------------~~~~l~~~le~~------ 182 (345)
.. .....+......... ........+|+|||++.++.. .++.|+++++..
T Consensus 90 ~~~~g~~~~~~~~~~~~~~~~------~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~ 163 (363)
T 3hws_A 90 AGYVGEDVENIIQKLLQKCDY------DVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPP 163 (363)
T ss_dssp CHHHHHHHTHHHHHHHHHTTT------CHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC------
T ss_pred cccccccHHHHHHHHHHHhhh------hHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccC
Confidence 11 111112221111000 000012459999999988754 899999999831
Q ss_pred ---------------CCceEEEEecCcc----------cc-----------------------------------cchhh
Q 019145 183 ---------------SKVTRFFFICNYI----------SR-----------------------------------IIEPL 202 (345)
Q Consensus 183 ---------------~~~~~ii~~~n~~----------~~-----------------------------------l~~~l 202 (345)
..+..+|++++.. .. +.+++
T Consensus 164 ~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l 243 (363)
T 3hws_A 164 QGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEF 243 (363)
T ss_dssp ----------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHH
T ss_pred ccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHH
Confidence 0223344444321 11 57888
Q ss_pred hccce-eEEecCCCHHHHHHHHHH----HHH-------HhC--CCCCHHHHHHHHHhc---CCCHHHHHHHHHHHHHHh-
Q 019145 203 ASRCA-KFRFKPLSEEVMSSRVLH----ICN-------EEG--LNLDAEALSTLSSIS---QGDLRRAITYLQGAARLF- 264 (345)
Q Consensus 203 ~~r~~-~i~~~~~~~~~~~~~l~~----~~~-------~~~--~~i~~~~~~~l~~~s---~g~~r~~~~~l~~~~~~~- 264 (345)
.+|+. ++.|.|++.+++..++.. ... ..+ +.+++++++.|++.+ +++.|.+.+.++.+....
T Consensus 244 ~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l 323 (363)
T 3hws_A 244 IGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTM 323 (363)
T ss_dssp HTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHH
T ss_pred hcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHH
Confidence 99998 566999999998888765 221 123 347999999999753 677888888887766432
Q ss_pred ----C--C----CCCHHHHHHhhC
Q 019145 265 ----G--S----SITSKDLISVSG 278 (345)
Q Consensus 265 ----~--~----~it~~~v~~~~~ 278 (345)
. . .||.++|++..+
T Consensus 324 ~~~~~~~~~~~~~I~~~~v~~~~~ 347 (363)
T 3hws_A 324 YDLPSMEDVEKVVIDESVIDGQSE 347 (363)
T ss_dssp HSTTTCCCSEEEECHHHHTTCCSC
T ss_pred HhcccccCCceeEEcHHHHhCcCC
Confidence 1 1 266666665543
No 75
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.66 E-value=5.3e-16 Score=150.54 Aligned_cols=173 Identities=18% Similarity=0.197 Sum_probs=125.6
Q ss_pred CCCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 56 RPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
...+|+++.|.++.++.|++++.- ..+.++|||||||||||++|+++|+++ +.+++.++++
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el------g~~~~~v~~~ 272 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET------GAFFFLINGP 272 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT------TCEEEEEEHH
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh------CCeEEEEEhH
Confidence 345889999998888888877632 123459999999999999999999998 7788888875
Q ss_pred Ccc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH-----------HHHHHHHHHHhhcC--
Q 019145 123 DDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTMETYS-- 183 (345)
Q Consensus 123 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~-----------~~~~~l~~~le~~~-- 183 (345)
+.. +...++..+..... ..+.||+|||+|.+.. ...+.|+..++...
T Consensus 273 ~l~sk~~gese~~lr~lF~~A~~--------------~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~ 338 (806)
T 3cf2_A 273 EIMSKLAGESESNLRKAFEEAEK--------------NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR 338 (806)
T ss_dssp HHHSSCTTHHHHHHHHHHHHHTT--------------SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGG
T ss_pred HhhcccchHHHHHHHHHHHHHHH--------------cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccccc
Confidence 421 22233343333221 2346999999998842 34567777777543
Q ss_pred CceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC
Q 019145 184 KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD 249 (345)
Q Consensus 184 ~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~ 249 (345)
..+.+|.+||.++.+++++++ |+. .++++.|+.++..++++..++..... ++..+..+++.+.|-
T Consensus 339 ~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~Gf 406 (806)
T 3cf2_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGH 406 (806)
T ss_dssp GCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCCSC
T ss_pred CCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhcCCC
Confidence 356778889999999999998 777 79999999999999998766443222 222377888887653
No 76
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.64 E-value=2.6e-14 Score=123.30 Aligned_cols=208 Identities=17% Similarity=0.147 Sum_probs=125.7
Q ss_pred CCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC
Q 019145 57 PKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (345)
..+|+++.|.+++++.+.+.+.. ....+++|+||||||||+++++++..+ +..++.+++.+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~------~~~~i~i~g~~ 79 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES------GLNFISVKGPE 79 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT------TCEEEEEETTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc------CCCEEEEEcHH
Confidence 45889999999998888775421 123349999999999999999999987 44677787765
Q ss_pred ccch--HHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH-----------HHHHHHHHHHhhcC--CceEE
Q 019145 124 DRGI--NVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE-----------DAQNALRRTMETYS--KVTRF 188 (345)
Q Consensus 124 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~-----------~~~~~l~~~le~~~--~~~~i 188 (345)
.... ......+......... ....++++||++.+.. ...+.++..++... ..+.+
T Consensus 80 l~~~~~~~~~~~i~~vf~~a~~----------~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ 149 (274)
T 2x8a_A 80 LLNMYVGESERAVRQVFQRAKN----------SAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFI 149 (274)
T ss_dssp TCSSTTHHHHHHHHHHHHHHHH----------TCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEE
T ss_pred HHhhhhhHHHHHHHHHHHHHHh----------cCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEE
Confidence 3221 1112222222111100 1235999999998631 12345555565432 34556
Q ss_pred EEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHh-CCCCCH-HHHHHHHHh------cCCCHHHHHHHH
Q 019145 189 FFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEE-GLNLDA-EALSTLSSI------SQGDLRRAITYL 257 (345)
Q Consensus 189 i~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~-~~~i~~-~~~~~l~~~------s~g~~r~~~~~l 257 (345)
+.++|.++.+++++.+ |++ .+.++.|+.++..++++..++.. ...++. ..+..++.. ++.|+..+++..
T Consensus 150 ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a 229 (274)
T 2x8a_A 150 MAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREA 229 (274)
T ss_dssp EEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHH
T ss_pred EeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHH
Confidence 6778999999999987 777 78999999999999998877542 222322 235666653 333554444433
Q ss_pred HHHHHHh------------CCCCCHHHHHHhhCCC
Q 019145 258 QGAARLF------------GSSITSKDLISVSGVI 280 (345)
Q Consensus 258 ~~~~~~~------------~~~it~~~v~~~~~~~ 280 (345)
...+... ...|+.+|..+++...
T Consensus 230 ~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~ 264 (274)
T 2x8a_A 230 SICALRQEMARQKSGNEKGELKVSHKHFEEAFKKV 264 (274)
T ss_dssp HHHHHHHHC-----------CCBCHHHHHHHHTTC
T ss_pred HHHHHHHHHhhccccccccCCeecHHHHHHHHHHh
Confidence 2222110 1247777777776554
No 77
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.63 E-value=2.4e-16 Score=152.88 Aligned_cols=182 Identities=21% Similarity=0.226 Sum_probs=117.8
Q ss_pred CCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC-
Q 019145 58 KQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD- 123 (345)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~- 123 (345)
.+|+++.|.+++++.|.+.+.. .....+|||||||||||.+|+++|+++ +.+++.+++++
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~------~~~f~~v~~~~l 547 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPEL 547 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT------TCEEEECCHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh------CCceEEeccchh
Confidence 4788999999999988877632 122349999999999999999999998 77888776543
Q ss_pred -----ccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--------------HHHHHHHHHHhhcC-
Q 019145 124 -----DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--------------DAQNALRRTMETYS- 183 (345)
Q Consensus 124 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--------------~~~~~l~~~le~~~- 183 (345)
..+...++..+...... .+.||||||+|.+.. ...+.|+..++...
T Consensus 548 ~s~~vGese~~vr~lF~~Ar~~--------------~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~ 613 (806)
T 3cf2_A 548 LTMWFGESEANVREIFDKARQA--------------APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 613 (806)
T ss_dssp HTTTCSSCHHHHHHHHHHHHTT--------------CSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS
T ss_pred hccccchHHHHHHHHHHHHHHc--------------CCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC
Confidence 23344556665554332 235999999998842 13567888887543
Q ss_pred -CceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHh----cCCCHHHHHH
Q 019145 184 -KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSI----SQGDLRRAIT 255 (345)
Q Consensus 184 -~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~----s~g~~r~~~~ 255 (345)
..+.+|.+||.++.+++++++ |++ .++|+.|+.++..++++..+++..+. ++..++.|++. |+.|+..+++
T Consensus 614 ~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~la~~t~g~SGadi~~l~~ 692 (806)
T 3cf2_A 614 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQ 692 (806)
T ss_dssp SSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC----------------CHHHHHH
T ss_pred CCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCCHHHHHHHHH
Confidence 356677789999999999998 887 88999999999999997776543332 12235666654 4667777665
Q ss_pred HHHHH
Q 019145 256 YLQGA 260 (345)
Q Consensus 256 ~l~~~ 260 (345)
.....
T Consensus 693 ~A~~~ 697 (806)
T 3cf2_A 693 RACKL 697 (806)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54433
No 78
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.61 E-value=3.3e-15 Score=116.49 Aligned_cols=132 Identities=17% Similarity=0.178 Sum_probs=93.0
Q ss_pred cccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHH
Q 019145 62 DVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (345)
+++|+...+..+.+.+.. ....+++|+||||||||++|+++++.... .+.+++ +++............+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~---~~~~~v-~~~~~~~~~~~~~~~~~~a-- 75 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRN---AQGEFV-YRELTPDNAPQLNDFIALA-- 75 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTT---TTSCCE-EEECCTTTSSCHHHHHHHH--
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCc---cCCCEE-EECCCCCcchhhhcHHHHc--
Confidence 578988888888877754 34457999999999999999999987521 244666 7776543322222222221
Q ss_pred hhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCccc-------ccchhhhccce--eEE
Q 019145 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS-------RIIEPLASRCA--KFR 210 (345)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~-------~l~~~l~~r~~--~i~ 210 (345)
..++|+|||++.++.+.+..|+.+++..+..+++|+++|... .+.+.+..|+. .+.
T Consensus 76 ---------------~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~rl~~~~i~ 140 (145)
T 3n70_A 76 ---------------QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQIA 140 (145)
T ss_dssp ---------------TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSCCCHHHHHHHHHHEEE
T ss_pred ---------------CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCCCCHHHHHHhcCCEEe
Confidence 124899999999999999999999988777888999998642 34566666655 566
Q ss_pred ecCC
Q 019145 211 FKPL 214 (345)
Q Consensus 211 ~~~~ 214 (345)
++|+
T Consensus 141 lPpL 144 (145)
T 3n70_A 141 CLPL 144 (145)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6654
No 79
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.61 E-value=4e-14 Score=123.50 Aligned_cols=149 Identities=13% Similarity=0.191 Sum_probs=98.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeE
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYK 157 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (345)
.++|+||||||||++|+++++++ +.+++.++++...+ ...+...+........ ...+.
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l------~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~----------~~~~~ 101 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKM------GINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIR----------KGNMC 101 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH------TCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHT----------TSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHh------CCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHh----------cCCCe
Confidence 48999999999999999999999 67888887643211 1122223322211100 12346
Q ss_pred EEEEcCCCCCCH-------------HHHHHHHHHHhhc-------------CCceEEEEecCcccccchhhhc--cceeE
Q 019145 158 IIILDEADSMTE-------------DAQNALRRTMETY-------------SKVTRFFFICNYISRIIEPLAS--RCAKF 209 (345)
Q Consensus 158 iliiDE~~~l~~-------------~~~~~l~~~le~~-------------~~~~~ii~~~n~~~~l~~~l~~--r~~~i 209 (345)
||+|||+|.+.. ..++.|+++++.. ..++.+|++||.++.+++++++ |+..+
T Consensus 102 vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~ 181 (293)
T 3t15_A 102 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKF 181 (293)
T ss_dssp CEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEE
T ss_pred EEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCcee
Confidence 999999998754 2447888888622 2467899999999999999986 66643
Q ss_pred EecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH-hcCCCHH
Q 019145 210 RFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSS-ISQGDLR 251 (345)
Q Consensus 210 ~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~-~s~g~~r 251 (345)
.+ .|+.++..++++..+...++ +.+.+..+.. .++.++.
T Consensus 182 i~-~P~~~~r~~Il~~~~~~~~~--~~~~l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 182 YW-APTREDRIGVCTGIFRTDNV--PAEDVVKIVDNFPGQSID 221 (293)
T ss_dssp EE-CCCHHHHHHHHHHHHGGGCC--CHHHHHHHHHHSCSCCHH
T ss_pred Ee-CcCHHHHHHHHHHhccCCCC--CHHHHHHHhCCCCcccHH
Confidence 34 46999999999988876654 4555555554 4556664
No 80
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.59 E-value=8.5e-14 Score=126.51 Aligned_cols=128 Identities=17% Similarity=0.209 Sum_probs=90.7
Q ss_pred CeEEEEEcCCCCCCH------------HHHHHHHHHHhhc----------CCceEEEEec----Ccccccchhhhcccee
Q 019145 155 PYKIIILDEADSMTE------------DAQNALRRTMETY----------SKVTRFFFIC----NYISRIIEPLASRCAK 208 (345)
Q Consensus 155 ~~~iliiDE~~~l~~------------~~~~~l~~~le~~----------~~~~~ii~~~----n~~~~l~~~l~~r~~~ 208 (345)
+..++++||+|++.. .+|+.|++++|.. ..++.||+++ +.+..+.+.+.+|+.+
T Consensus 250 ~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i 329 (444)
T 1g41_A 250 QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPI 329 (444)
T ss_dssp HHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCE
T ss_pred cCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccce
Confidence 355899999998853 2678999999852 2456677776 2334466899999995
Q ss_pred -EEecCCCHHHHHHHHHH-----------HHHHhCC--CCCHHHHHHHHHh--------cCCCHHHHHHHHHHHHHHh--
Q 019145 209 -FRFKPLSEEVMSSRVLH-----------ICNEEGL--NLDAEALSTLSSI--------SQGDLRRAITYLQGAARLF-- 264 (345)
Q Consensus 209 -i~~~~~~~~~~~~~l~~-----------~~~~~~~--~i~~~~~~~l~~~--------s~g~~r~~~~~l~~~~~~~-- 264 (345)
+.|++++.+++..++.. .+..+++ .++++++..|++. -++..|.+-+.++++..-.
T Consensus 330 ~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~ 409 (444)
T 1g41_A 330 RVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISF 409 (444)
T ss_dssp EEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHH
T ss_pred eeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHh
Confidence 89999999999999831 2222343 4899999999985 2466777777776655321
Q ss_pred ---C---C--CCCHHHHHHhhCCCCH
Q 019145 265 ---G---S--SITSKDLISVSGVIPP 282 (345)
Q Consensus 265 ---~---~--~it~~~v~~~~~~~~~ 282 (345)
. . .||.+.|.+.++....
T Consensus 410 ~~~~~~~~~~~i~~~~v~~~l~~~~~ 435 (444)
T 1g41_A 410 SASDMNGQTVNIDAAYVADALGEVVE 435 (444)
T ss_dssp HGGGCTTCEEEECHHHHHHHHTTTTT
T ss_pred hccccCCCeEEEeHHHHHHhcCcccc
Confidence 1 1 2899999888875443
No 81
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.57 E-value=6.4e-15 Score=114.52 Aligned_cols=128 Identities=13% Similarity=0.155 Sum_probs=88.6
Q ss_pred cccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHH
Q 019145 62 DVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAA 139 (345)
Q Consensus 62 ~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (345)
+++|+...++.+.+.+.. ....+++|+||||||||++|+++++.. . +++.+++..... ......+..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~------~-~~~~~~~~~~~~-~~~~~~~~~--- 73 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG------T-PWVSPARVEYLI-DMPMELLQK--- 73 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT------S-CEECCSSTTHHH-HCHHHHHHH---
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC------C-CeEEechhhCCh-HhhhhHHHh---
Confidence 578888888877777654 444579999999999999999998875 2 778888775321 111112111
Q ss_pred hhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-CceEEEEecCccc-c----cchhhhccce--eEEe
Q 019145 140 VAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-KVTRFFFICNYIS-R----IIEPLASRCA--KFRF 211 (345)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-~~~~ii~~~n~~~-~----l~~~l~~r~~--~i~~ 211 (345)
...++|+|||++.++.+.+..|++++++.. ..+++|+++|... . +.+.+..|+. .+.+
T Consensus 74 --------------a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~~~~~L~~rl~~~~i~l 139 (143)
T 3co5_A 74 --------------AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSYAAGSDGISCEEKLAGLFSESVVRI 139 (143)
T ss_dssp --------------TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--CHHHHHHHHSSSEEEEE
T ss_pred --------------CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhCccHHHHHHhcCcEEeC
Confidence 123599999999999999999999998763 5678888887542 2 4456666755 4566
Q ss_pred cCC
Q 019145 212 KPL 214 (345)
Q Consensus 212 ~~~ 214 (345)
+|+
T Consensus 140 PpL 142 (143)
T 3co5_A 140 PPL 142 (143)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 82
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.56 E-value=1.2e-15 Score=145.30 Aligned_cols=207 Identities=18% Similarity=0.126 Sum_probs=129.1
Q ss_pred CCccccccHHHHHHHHHHHHcCCCC-----------cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeee----ecCC
Q 019145 59 QVKDVAHQEEVVRVLTNTLETANCP-----------HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLEL----NASD 123 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~-----------~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~----~~~~ 123 (345)
-...++|++.++..+...+..+... ++||+||||||||++|+++++.+.. .++.. ++.+
T Consensus 293 l~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r------~~~~~~~~~~~~~ 366 (595)
T 3f9v_A 293 IAPSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPR------AVYTTGKGSTAAG 366 (595)
T ss_dssp TSSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSC------EECCCTTCSTTTT
T ss_pred hcchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCC------ceecCCCcccccc
Confidence 3356889999988887776665311 7999999999999999999987621 11111 1111
Q ss_pred ccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-------------CceEEEE
Q 019145 124 DRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-------------KVTRFFF 190 (345)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-------------~~~~ii~ 190 (345)
... ......... ......+....+..++++|||++.++++.++.|++.+++.. ..+.+|.
T Consensus 367 l~~-~~~~~~~~g------~~~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIa 439 (595)
T 3f9v_A 367 LTA-AVVREKGTG------EYYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIA 439 (595)
T ss_dssp SEE-ECSSGGGTS------SCSEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEE
T ss_pred ccc-eeeeccccc------cccccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEE
Confidence 000 000000000 00000000001234699999999999999999999998533 3466888
Q ss_pred ecCccc-------------ccchhhhccce-eEEecCCCHHHHHHHHHHHHHHh-------------------------C
Q 019145 191 ICNYIS-------------RIIEPLASRCA-KFRFKPLSEEVMSSRVLHICNEE-------------------------G 231 (345)
Q Consensus 191 ~~n~~~-------------~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~-------------------------~ 231 (345)
++|+.. .+++++.+||+ ++.+.+++..+...+.......+ .
T Consensus 440 atNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~ 519 (595)
T 3f9v_A 440 AGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVT 519 (595)
T ss_dssp EECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHC
T ss_pred EcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCC
Confidence 888765 78899999996 55555555444444444333221 2
Q ss_pred CCCCHHHHHHHHHh---------------cCCCHHHHHHHHHHHHHHh----CCCCCHHHHHHhhC
Q 019145 232 LNLDAEALSTLSSI---------------SQGDLRRAITYLQGAARLF----GSSITSKDLISVSG 278 (345)
Q Consensus 232 ~~i~~~~~~~l~~~---------------s~g~~r~~~~~l~~~~~~~----~~~it~~~v~~~~~ 278 (345)
..+++++.+.|.+. .++++|.+.+.+..+...+ ...|+.+||.+++.
T Consensus 520 p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~ 585 (595)
T 3f9v_A 520 PKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAIN 585 (595)
T ss_dssp CCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHH
Confidence 25677777777765 4678888877776554433 35699999988753
No 83
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.51 E-value=2.4e-13 Score=123.19 Aligned_cols=212 Identities=18% Similarity=0.214 Sum_probs=140.9
Q ss_pred CccccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHH
Q 019145 60 VKDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTF 137 (345)
Q Consensus 60 ~~~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (345)
+..++|+...+..+...+.. ....+++++|++||||+++|+.++... .....+|+.++|... ....+...+-..
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s---~r~~~~fv~v~~~~~-~~~~~~~elfg~ 211 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLS---DRSKEPFVALNVASI-PRDIFEAELFGY 211 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHS---TTTTSCEEEEETTTS-CHHHHHHHHHCB
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhc---CCCCCCeEEEecCCC-CHHHHHHHhcCC
Confidence 45678887777766666544 223358999999999999999998764 223568999999863 222222211110
Q ss_pred HHhhhcCC--CCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCcc-------cc
Q 019145 138 AAVAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------SR 197 (345)
Q Consensus 138 ~~~~~~~~--~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~-------~~ 197 (345)
......+. ...+....+..+.|++||++.++.+.|..|++++++.. .++++|++||.. ..
T Consensus 212 ~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~ 291 (387)
T 1ny5_A 212 EKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGK 291 (387)
T ss_dssp CTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTS
T ss_pred CCCCCCCcccccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCC
Confidence 00000000 01111112445799999999999999999999998632 357788888753 23
Q ss_pred cchhhhccce--eEEecCCCH--HHHHHHHHHHH----HHhCC---CCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHh-
Q 019145 198 IIEPLASRCA--KFRFKPLSE--EVMSSRVLHIC----NEEGL---NLDAEALSTLSSIS-QGDLRRAITYLQGAARLF- 264 (345)
Q Consensus 198 l~~~l~~r~~--~i~~~~~~~--~~~~~~l~~~~----~~~~~---~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~- 264 (345)
+.+.+..|.. .+.++|+.. +++..++..++ .+.+. .+++++++.+..+. .||+|.+.|.++.++..+
T Consensus 292 fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~~ 371 (387)
T 1ny5_A 292 FREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSE 371 (387)
T ss_dssp SCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHCC
T ss_pred ccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhCC
Confidence 4566666765 466666653 66665555544 33343 37999999999876 899999999999998776
Q ss_pred CCCCCHHHHHH
Q 019145 265 GSSITSKDLIS 275 (345)
Q Consensus 265 ~~~it~~~v~~ 275 (345)
+..|+.+++..
T Consensus 372 ~~~i~~~~l~~ 382 (387)
T 1ny5_A 372 GKFIDRGELSC 382 (387)
T ss_dssp SSEECHHHHHH
T ss_pred CCcCcHHHCcH
Confidence 44588887654
No 84
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.49 E-value=3e-13 Score=121.61 Aligned_cols=200 Identities=19% Similarity=0.196 Sum_probs=132.2
Q ss_pred ccccccHHHHHHHHHHHHc--CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHH
Q 019145 61 KDVAHQEEVVRVLTNTLET--ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFA 138 (345)
Q Consensus 61 ~~~~g~~~~~~~l~~~l~~--~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (345)
..++|+...+..+...+.. ....+++++|++||||+.+++.+++.... ...++.++|..... ..+...+-...
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r----~~~fv~vnc~~~~~-~~~~~~lfg~~ 203 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGR----KGAFVDLNCASIPQ-ELAESELFGHE 203 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCC----CSCEEEEESSSSCT-TTHHHHHHEEC
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccc----cCCcEEEEcccCCh-HHHHHHhcCcc
Confidence 3577877766655554432 23345999999999999999999887522 12388999986422 22221111000
Q ss_pred HhhhcCC--CCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcC-----------CceEEEEecCcc-------ccc
Q 019145 139 AVAVGSG--QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYS-----------KVTRFFFICNYI-------SRI 198 (345)
Q Consensus 139 ~~~~~~~--~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~-----------~~~~ii~~~n~~-------~~l 198 (345)
....... ...+....+..+.|++||++.++...|..|++++++.. .++++|++||.. ..+
T Consensus 204 ~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~f 283 (368)
T 3dzd_A 204 KGAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNF 283 (368)
T ss_dssp SCSSSSCCCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSS
T ss_pred ccccCCcccccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCc
Confidence 0000000 00000111345689999999999999999999998632 256788888753 234
Q ss_pred chhhhccce--eEEecCCCH--HHHHHHHHHHHH----HhC---CCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHHhC
Q 019145 199 IEPLASRCA--KFRFKPLSE--EVMSSRVLHICN----EEG---LNLDAEALSTLSSIS-QGDLRRAITYLQGAARLFG 265 (345)
Q Consensus 199 ~~~l~~r~~--~i~~~~~~~--~~~~~~l~~~~~----~~~---~~i~~~~~~~l~~~s-~g~~r~~~~~l~~~~~~~~ 265 (345)
.+.+..|+. .+.++|+.. +++..++..++. ..+ ..+++++++.|..+. .||+|.+.|.++.++..+.
T Consensus 284 r~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~~~ 362 (368)
T 3dzd_A 284 REDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVILCE 362 (368)
T ss_dssp CHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHTCC
T ss_pred cHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhCC
Confidence 567778877 466888766 677666555543 334 348999999999987 9999999999999987653
No 85
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.48 E-value=2.9e-12 Score=114.54 Aligned_cols=190 Identities=13% Similarity=0.132 Sum_probs=122.2
Q ss_pred CCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc------chHHHHH
Q 019145 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR------GINVVRT 132 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~ 132 (345)
.-..++|+++.+..|..++..+ +.++++||+|+|||++++.+++.. + ++.+++.... +...+..
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P--GILIDCRELYAERGHITREELIK 79 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S--EEEEEHHHHHHTTTCBCHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C--cEEEEeecccccccCCCHHHHHH
Confidence 3457899999999999998875 578999999999999999999885 2 4444443211 1111111
Q ss_pred HHHHHHHh------hh-------cCCCC--CCCC-----------CCCCeEEEEEcCCCCCCH-------HHHHHHHHHH
Q 019145 133 KIKTFAAV------AV-------GSGQR--RGGY-----------PCPPYKIIILDEADSMTE-------DAQNALRRTM 179 (345)
Q Consensus 133 ~~~~~~~~------~~-------~~~~~--~~~~-----------~~~~~~iliiDE~~~l~~-------~~~~~l~~~l 179 (345)
.+...... .. +.... .... ....+.+|+|||++.+.. +....|..++
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~ 159 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAY 159 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHH
Confidence 11110000 00 00000 0000 000246899999999753 4556666666
Q ss_pred hhcCCceEEEEecCccccc---------chhhhccc-eeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC
Q 019145 180 ETYSKVTRFFFICNYISRI---------IEPLASRC-AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGD 249 (345)
Q Consensus 180 e~~~~~~~ii~~~n~~~~l---------~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~ 249 (345)
+.. .++.+|+++.....+ ...+..|. ..+.+.|++.++..+++...+...|..++++.+..+.+.++|+
T Consensus 160 ~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~ 238 (350)
T 2qen_A 160 DSL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGI 238 (350)
T ss_dssp HHC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTC
T ss_pred Hhc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC
Confidence 553 467778777543211 12233343 4899999999999999998887788889999999999999999
Q ss_pred HHHHHHHHHH
Q 019145 250 LRRAITYLQG 259 (345)
Q Consensus 250 ~r~~~~~l~~ 259 (345)
+..+......
T Consensus 239 P~~l~~~~~~ 248 (350)
T 2qen_A 239 PGWLVVFGVE 248 (350)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9875544443
No 86
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.47 E-value=4.1e-13 Score=132.28 Aligned_cols=182 Identities=18% Similarity=0.189 Sum_probs=127.6
Q ss_pred hhCCCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeee
Q 019145 54 KYRPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELN 120 (345)
Q Consensus 54 ~~~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~ 120 (345)
.+.+.+|++++|++..++.+.+++.. ....+++|+||||||||+++++++..+ +..++.++
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l------~~~~i~v~ 270 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET------GAFFFLIN 270 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT------TCEEEEEE
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc------CCcEEEEE
Confidence 45667899999999999888888754 233459999999999999999999987 56777787
Q ss_pred cCCccc------hHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC-----------HHHHHHHHHHHhhcC
Q 019145 121 ASDDRG------INVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT-----------EDAQNALRRTMETYS 183 (345)
Q Consensus 121 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~-----------~~~~~~l~~~le~~~ 183 (345)
+.+..+ ...+...+...... ...++++||++.+. ....+.|+.+++...
T Consensus 271 ~~~l~~~~~g~~~~~l~~vf~~a~~~--------------~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~ 336 (806)
T 1ypw_A 271 GPEIMSKLAGESESNLRKAFEEAEKN--------------APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK 336 (806)
T ss_dssp HHHHSSSSTTHHHHHHHHHHHHHHHH--------------CSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC
T ss_pred chHhhhhhhhhHHHHHHHHHHHHHhc--------------CCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc
Confidence 643211 12233333332221 23599999998763 235567788887543
Q ss_pred --CceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHH
Q 019145 184 --KVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITY 256 (345)
Q Consensus 184 --~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~ 256 (345)
..+.+|+++|.+..+.+.+.+ |+. .+.+..|+.++...+++..+....+. .+..+..++..+.|.....+..
T Consensus 337 ~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~g~dl~~ 413 (806)
T 1ypw_A 337 QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAA 413 (806)
T ss_dssp TTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-TTCCTHHHHHSCSSCCHHHHHH
T ss_pred ccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCc-ccchhHHHHHhhcCcchHHHHH
Confidence 356788889999899999887 775 68999999999999998776543332 2334667777776655443333
No 87
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.42 E-value=6.7e-15 Score=144.99 Aligned_cols=154 Identities=21% Similarity=0.229 Sum_probs=110.5
Q ss_pred CCCCCccccccHHHHHHHHHHHHc-------------CCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 56 RPKQVKDVAHQEEVVRVLTNTLET-------------ANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 56 ~p~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
....|+++.|.+.+++.+...+.. ....+++|+||||||||++|+++++.+ +..++.++++
T Consensus 472 ~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~------~~~~i~v~~~ 545 (806)
T 1ypw_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGP 545 (806)
T ss_dssp CCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH------TCCCCCCCCS
T ss_pred ccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh------CCCEEEEech
Confidence 445788999999999888877643 123458999999999999999999998 4556666665
Q ss_pred Ccc------chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCC--------------HHHHHHHHHHHhhc
Q 019145 123 DDR------GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMT--------------EDAQNALRRTMETY 182 (345)
Q Consensus 123 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~--------------~~~~~~l~~~le~~ 182 (345)
+.. ....+...+...... .+.++++||+|.+. ...++.|+..++..
T Consensus 546 ~l~~~~~g~~~~~i~~~f~~a~~~--------------~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~ 611 (806)
T 1ypw_A 546 ELLTMWFGESEANVREIFDKARQA--------------APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 611 (806)
T ss_dssp SSTTCCTTTSSHHHHHHHHHHHHH--------------CSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--
T ss_pred HhhhhhcCccHHHHHHHHHHHHhc--------------CCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcc
Confidence 421 123344444443322 22499999998762 22345666666643
Q ss_pred --CCceEEEEecCcccccchhhhc--cce-eEEecCCCHHHHHHHHHHHHHH
Q 019145 183 --SKVTRFFFICNYISRIIEPLAS--RCA-KFRFKPLSEEVMSSRVLHICNE 229 (345)
Q Consensus 183 --~~~~~ii~~~n~~~~l~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~ 229 (345)
...+.+|++||.++.+++++.+ ||. .+.|++|+.++...+++..++.
T Consensus 612 ~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~ 663 (806)
T 1ypw_A 612 STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 663 (806)
T ss_dssp ----CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSC
T ss_pred cccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhcc
Confidence 2456778889999999999998 887 8999999999999999877654
No 88
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.40 E-value=4.2e-13 Score=108.49 Aligned_cols=133 Identities=13% Similarity=0.186 Sum_probs=79.6
Q ss_pred hhhCCCCCccccc----cHHHHHHHHHHHHcC---CCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCcc
Q 019145 53 EKYRPKQVKDVAH----QEEVVRVLTNTLETA---NCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDR 125 (345)
Q Consensus 53 ~~~~p~~~~~~~g----~~~~~~~l~~~l~~~---~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 125 (345)
++|++.+|+++++ +..++..+..++..- ...+++|+||+|+||||+++++++.+.... +..++.++..
T Consensus 2 ~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~--g~~~~~~~~~--- 76 (180)
T 3ec2_A 2 KRYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKK--GIRGYFFDTK--- 76 (180)
T ss_dssp CSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHS--CCCCCEEEHH---
T ss_pred chhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHc--CCeEEEEEHH---
Confidence 5899999999986 455666666666543 234689999999999999999999873111 1122222221
Q ss_pred chHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCC--CCCHHHHHHHHHHHhhcC-CceEEEEecCccc
Q 019145 126 GINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEAD--SMTEDAQNALRRTMETYS-KVTRFFFICNYIS 196 (345)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~--~l~~~~~~~l~~~le~~~-~~~~ii~~~n~~~ 196 (345)
.+...+......... ........+.++|++||++ .++......+..+++... ....+|++||...
T Consensus 77 ---~~~~~~~~~~~~~~~---~~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 77 ---DLIFRLKHLMDEGKD---TKFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp ---HHHHHHHHHHHHTCC---SHHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred ---HHHHHHHHHhcCchH---HHHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 111111110000000 0000000134699999998 567777778888887653 4567888887654
No 89
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.35 E-value=2.1e-11 Score=109.21 Aligned_cols=189 Identities=17% Similarity=0.140 Sum_probs=117.8
Q ss_pred CCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc-----cchHHHHHH
Q 019145 59 QVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD-----RGINVVRTK 133 (345)
Q Consensus 59 ~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 133 (345)
....++|+++.+..|.. +.. +.++++||+|+|||++++.+++.+. ..++.+++... .+.......
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELN------LPYIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHT------CCEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcC------CCEEEEEchhhccccCCCHHHHHHH
Confidence 34578999999999988 655 5789999999999999999999872 23444554321 111111111
Q ss_pred HHHHHHh-----------hhc-------C-CCC------CCCC---------CCC-CeEEEEEcCCCCCCH----HHHHH
Q 019145 134 IKTFAAV-----------AVG-------S-GQR------RGGY---------PCP-PYKIIILDEADSMTE----DAQNA 174 (345)
Q Consensus 134 ~~~~~~~-----------~~~-------~-~~~------~~~~---------~~~-~~~iliiDE~~~l~~----~~~~~ 174 (345)
+...... ... . ... .... ... .+-+|+|||++.+.. +....
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHH
Confidence 1111100 000 0 000 0000 001 256899999999753 34445
Q ss_pred HHHHHhhcCCceEEEEecCcccccc---------hhhhccc-eeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Q 019145 175 LRRTMETYSKVTRFFFICNYISRII---------EPLASRC-AKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSS 244 (345)
Q Consensus 175 l~~~le~~~~~~~ii~~~n~~~~l~---------~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~ 244 (345)
|..+.+.. .++.+|++++....+. ..+..|. ..+.+.|++.++..+++...+...+...++. ..+.+
T Consensus 161 l~~~~~~~-~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~--~~i~~ 237 (357)
T 2fna_A 161 LAYAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY--EVVYE 237 (357)
T ss_dssp HHHHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH--HHHHH
T ss_pred HHHHHHcC-CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH--HHHHH
Confidence 55555543 4677888876532111 2234454 5899999999999999998877677776654 88999
Q ss_pred hcCCCHHHHHHHHHHH
Q 019145 245 ISQGDLRRAITYLQGA 260 (345)
Q Consensus 245 ~s~g~~r~~~~~l~~~ 260 (345)
.++|++..+...+..+
T Consensus 238 ~t~G~P~~l~~~~~~~ 253 (357)
T 2fna_A 238 KIGGIPGWLTYFGFIY 253 (357)
T ss_dssp HHCSCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHH
Confidence 9999999866555443
No 90
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.23 E-value=6.1e-11 Score=107.20 Aligned_cols=203 Identities=16% Similarity=0.100 Sum_probs=122.7
Q ss_pred ccccHHHHHHHHHHHHcCC-----CCcEEEeCCCCCCHHHHHHHH-HHHhcCCCCCCCceeeeecCCccchHHHHHHHHH
Q 019145 63 VAHQEEVVRVLTNTLETAN-----CPHMLFYGPPGTGKTTTALAI-AHQLFGPELYKSRVLELNASDDRGINVVRTKIKT 136 (345)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~~-----~~~lll~G~~G~GKT~la~~l-a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (345)
+.|++.++..+.-.+..+. .-|+||.|+||| ||.+++.+ ++.+ .. ..+....++. ...+...+
T Consensus 215 I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~-pR----~~ft~g~~ss---~~gLt~s~-- 283 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLA-PR----GVYVDLRRTE---LTDLTAVL-- 283 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTC-SS----EEEEEGGGCC---HHHHSEEE--
T ss_pred cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhC-CC----eEEecCCCCC---ccCceEEE--
Confidence 7899999888887776663 126999999999 99999999 5543 11 1111111111 00000000
Q ss_pred HHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhc---------CCceEEEEecCccc-----------
Q 019145 137 FAAVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY---------SKVTRFFFICNYIS----------- 196 (345)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~---------~~~~~ii~~~n~~~----------- 196 (345)
.. ..+....++....+..+++++||++.++.+.+..|++.|++. +..+.+|.++|+..
T Consensus 284 -r~-~tG~~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~ 361 (506)
T 3f8t_A 284 -KE-DRGWALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARI 361 (506)
T ss_dssp -EE-SSSEEEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGC
T ss_pred -Ec-CCCcccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCcccc
Confidence 00 000000111112345579999999999999999999999963 45677888888754
Q ss_pred ccchhhhccceeEEe---------------cCCCHHHHHHHHHHHH-HHhCCCCCHHHHHHHHHhc--------------
Q 019145 197 RIIEPLASRCAKFRF---------------KPLSEEVMSSRVLHIC-NEEGLNLDAEALSTLSSIS-------------- 246 (345)
Q Consensus 197 ~l~~~l~~r~~~i~~---------------~~~~~~~~~~~l~~~~-~~~~~~i~~~~~~~l~~~s-------------- 246 (345)
.+++++++||+.+.. +.++.+++++++...- ......+++++.+.|.+..
T Consensus 362 ~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~ 441 (506)
T 3f8t_A 362 DLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMG 441 (506)
T ss_dssp CSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccc
Confidence 688999999974322 1234555666655432 1235668898887776431
Q ss_pred ----CCCHHHHHHHHHHHHHH---hC-CCCCHHHHHHhhC
Q 019145 247 ----QGDLRRAITYLQGAARL---FG-SSITSKDLISVSG 278 (345)
Q Consensus 247 ----~g~~r~~~~~l~~~~~~---~~-~~it~~~v~~~~~ 278 (345)
+-.+|.+..++.-+-+. .+ ..|+.+||.+++.
T Consensus 442 ~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~ 481 (506)
T 3f8t_A 442 LPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAE 481 (506)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHH
Confidence 23566655555433222 23 4588888877643
No 91
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.20 E-value=1.1e-10 Score=108.16 Aligned_cols=144 Identities=15% Similarity=0.173 Sum_probs=83.5
Q ss_pred cCcchhhhhhCCCCCcccc-ccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc
Q 019145 46 QSSQPWVEKYRPKQVKDVA-HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD 124 (345)
Q Consensus 46 ~~~~~~~~~~~p~~~~~~~-g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 124 (345)
..+.||.++|+|.+|+++- +|..++..+..++..+.. +++|.|+||||||+++..+++.+..... ..++.+ +...
T Consensus 9 ~~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~-~~li~G~aGTGKT~ll~~~~~~l~~~~~--~~il~~-a~T~ 84 (459)
T 3upu_A 9 HHSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKKH-HVTINGPAGTGATTLTKFIIEALISTGE--TGIILA-APTH 84 (459)
T ss_dssp ------------CCSSCCCHHHHHHHHHHHHHHHSSSC-EEEEECCTTSCHHHHHHHHHHHHHHTTC--CCEEEE-ESSH
T ss_pred CccCCCccccCCCccccCCHHHHHHHHHHHHHHhcCCC-EEEEEeCCCCCHHHHHHHHHHHHHhcCC--ceEEEe-cCcH
Confidence 5677999999999999998 688888888888877653 7999999999999999999998854322 122322 2222
Q ss_pred cchHHHHHHH-------HHHHHhhhcCCC------CCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEe
Q 019145 125 RGINVVRTKI-------KTFAAVAVGSGQ------RRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFI 191 (345)
Q Consensus 125 ~~~~~~~~~~-------~~~~~~~~~~~~------~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~ 191 (345)
.....+.+.+ ..+......... ........++++|+|||++.++...+..|...+. ....++++
T Consensus 85 ~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~---~~~~~~~v 161 (459)
T 3upu_A 85 AAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP---PWCTIIGI 161 (459)
T ss_dssp HHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC---TTCEEEEE
T ss_pred HHHHHHHhhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc---CCCEEEEE
Confidence 2222222211 111111000000 0111223457899999999999998888888774 45678888
Q ss_pred cCccc
Q 019145 192 CNYIS 196 (345)
Q Consensus 192 ~n~~~ 196 (345)
++...
T Consensus 162 GD~~Q 166 (459)
T 3upu_A 162 GDNKQ 166 (459)
T ss_dssp ECTTS
T ss_pred CCHHH
Confidence 75443
No 92
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=99.20 E-value=1.2e-11 Score=108.44 Aligned_cols=133 Identities=17% Similarity=0.200 Sum_probs=72.6
Q ss_pred hhhhhCCCCCcccccc----HHHHHHHHHHHHcC---CCCcEEEeCCCCCCHHHHHHHHHHHhc-CCCCCCCceeeeecC
Q 019145 51 WVEKYRPKQVKDVAHQ----EEVVRVLTNTLETA---NCPHMLFYGPPGTGKTTTALAIAHQLF-GPELYKSRVLELNAS 122 (345)
Q Consensus 51 ~~~~~~p~~~~~~~g~----~~~~~~l~~~l~~~---~~~~lll~G~~G~GKT~la~~la~~l~-~~~~~~~~~~~~~~~ 122 (345)
+.+.+++.+|+++++. ..+...+..++... ...+++|+||||||||+++.++++.+. .. +..+..++++
T Consensus 114 l~~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~---g~~v~~~~~~ 190 (308)
T 2qgz_A 114 LPKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK---GVSTTLLHFP 190 (308)
T ss_dssp SCGGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS---CCCEEEEEHH
T ss_pred CCHHHHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc---CCcEEEEEHH
Confidence 3456778899999862 33555666777653 245799999999999999999999884 22 2344444332
Q ss_pred CccchHHHHHHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCH--HHHHHH-HHHHhhc-CCceEEEEecCcc
Q 019145 123 DDRGINVVRTKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTE--DAQNAL-RRTMETY-SKVTRFFFICNYI 195 (345)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~--~~~~~l-~~~le~~-~~~~~ii~~~n~~ 195 (345)
+ .+..+...................++|||||++.... ..++.+ ..+++.. .....+|++||..
T Consensus 191 ~---------l~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~ 258 (308)
T 2qgz_A 191 S---------FAIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYS 258 (308)
T ss_dssp H---------HHHHHHCCCC----CCTTHHHHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSC
T ss_pred H---------HHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 1 1111111000000000000011346999999976543 223323 3355543 2345688888743
No 93
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.19 E-value=3.1e-11 Score=99.28 Aligned_cols=124 Identities=15% Similarity=0.203 Sum_probs=73.7
Q ss_pred hhhhhCCCCCccccccH----HHHHHHHHHHHcCC----CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 51 WVEKYRPKQVKDVAHQE----EVVRVLTNTLETAN----CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 51 ~~~~~~p~~~~~~~g~~----~~~~~l~~~l~~~~----~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
+.++|++.+|+++++.. .++..+..++.... ..+++|+||+|||||++++++++.+... +..++.+++.
T Consensus 15 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~---~~~~~~~~~~ 91 (202)
T 2w58_A 15 MPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR---NVSSLIVYVP 91 (202)
T ss_dssp SCGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEEEHH
T ss_pred CCHHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEhH
Confidence 44678899999999643 35566777776542 2579999999999999999999988432 2344444442
Q ss_pred CccchHHHH---------HHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHH--HHHHHH-HHHhhc-CCceEEE
Q 019145 123 DDRGINVVR---------TKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEADSMTED--AQNALR-RTMETY-SKVTRFF 189 (345)
Q Consensus 123 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~--~~~~l~-~~le~~-~~~~~ii 189 (345)
.. ...+. ..+..+. ...+|+|||++..... .+..++ .+++.. .....+|
T Consensus 92 ~~--~~~~~~~~~~~~~~~~~~~~~----------------~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i 153 (202)
T 2w58_A 92 EL--FRELKHSLQDQTMNEKLDYIK----------------KVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTF 153 (202)
T ss_dssp HH--HHHHHHC---CCCHHHHHHHH----------------HSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEE
T ss_pred HH--HHHHHHHhccchHHHHHHHhc----------------CCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEE
Confidence 10 00000 0011110 1249999999775432 233233 455443 3455688
Q ss_pred EecCcc
Q 019145 190 FICNYI 195 (345)
Q Consensus 190 ~~~n~~ 195 (345)
++||..
T Consensus 154 ~tsn~~ 159 (202)
T 2w58_A 154 FTSNFD 159 (202)
T ss_dssp EEESSC
T ss_pred EEcCCC
Confidence 888753
No 94
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.18 E-value=2.5e-11 Score=94.55 Aligned_cols=112 Identities=17% Similarity=0.231 Sum_probs=73.5
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCC
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG 145 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (345)
+...+..+..+ ....++|+||+|+|||+++++++..+.. .+..++.++..+.... .+
T Consensus 24 n~~~~~~l~~~----~g~~~~l~G~~G~GKTtL~~~i~~~~~~---~g~~~~~~~~~~~~~~--------~~-------- 80 (149)
T 2kjq_A 24 NAELVYVLRHK----HGQFIYVWGEEGAGKSHLLQAWVAQALE---AGKNAAYIDAASMPLT--------DA-------- 80 (149)
T ss_dssp THHHHHHCCCC----CCSEEEEESSSTTTTCHHHHHHHHHHHT---TTCCEEEEETTTSCCC--------GG--------
T ss_pred cHHHHHHHHhc----CCCEEEEECCCCCCHHHHHHHHHHHHHh---cCCcEEEEcHHHhhHH--------HH--------
Confidence 44555555444 3446899999999999999999998743 1334566666543222 00
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCC--ceEEEEecCcc-ccc--chhhhccce
Q 019145 146 QRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSK--VTRFFFICNYI-SRI--IEPLASRCA 207 (345)
Q Consensus 146 ~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~--~~~ii~~~n~~-~~l--~~~l~~r~~ 207 (345)
..+.++++|||++.+....++.|+.+++.... ...+|++++.. ..+ .+.+.+|+.
T Consensus 81 -------~~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~SRl~ 140 (149)
T 2kjq_A 81 -------AFEAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMA 140 (149)
T ss_dssp -------GGGCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHHHGG
T ss_pred -------HhCCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHHHHh
Confidence 01235999999999987668888888775432 22367777643 222 288888875
No 95
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=99.16 E-value=1.8e-10 Score=97.32 Aligned_cols=135 Identities=18% Similarity=0.236 Sum_probs=87.4
Q ss_pred HHHHHHHHHcC-CC-CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCC
Q 019145 70 VRVLTNTLETA-NC-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQR 147 (345)
Q Consensus 70 ~~~l~~~l~~~-~~-~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (345)
...+..|++.. .. ..++|+||||||||+++.++++.+. . ...++.... .+....
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~------l-~G~vn~~~~-----------~f~l~~------ 145 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVP------F-YGCVNWTNE-----------NFPFND------ 145 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSS------C-EEECCTTCS-----------SCTTGG------
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhc------c-cceeecccc-----------cccccc------
Confidence 35677777765 32 3499999999999999999999751 1 111221110 000000
Q ss_pred CCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHh--------hcC-----CceEEEEecCc----------c-cccchhhh
Q 019145 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTME--------TYS-----KVTRFFFICNY----------I-SRIIEPLA 203 (345)
Q Consensus 148 ~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le--------~~~-----~~~~ii~~~n~----------~-~~l~~~l~ 203 (345)
.....+++.||..... +..+.+..+++ ... ..+.+|++||. . ....+.|.
T Consensus 146 -----~~~k~i~l~Ee~~~~~-d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~ 219 (267)
T 1u0j_A 146 -----CVDKMVIWWEEGKMTA-KVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQ 219 (267)
T ss_dssp -----GSSCSEEEECSCCEET-TTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHH
T ss_pred -----ccccEEEEeccccchh-HHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHh
Confidence 0123467777766554 45566777776 222 45678888886 1 24568899
Q ss_pred ccceeEEec--------CCCHHHHHHHHHHHHHHhCCCCC
Q 019145 204 SRCAKFRFK--------PLSEEVMSSRVLHICNEEGLNLD 235 (345)
Q Consensus 204 ~r~~~i~~~--------~~~~~~~~~~l~~~~~~~~~~i~ 235 (345)
+|+..+.|. +++.++++.++... +.++.+++
T Consensus 220 sR~~~f~F~~~~p~~~~~lt~~~~~~f~~w~-~~~~~~~~ 258 (267)
T 1u0j_A 220 DRMFKFELTRRLDHDFGKVTKQEVKDFFRWA-KDHVVEVE 258 (267)
T ss_dssp TTEEEEECCSCCCTTSCCCCHHHHHHHHHHH-HHTCCCCC
T ss_pred hhEEEEECCCcCCcccCCCCHHHHHHHHHHH-HHcCCCCc
Confidence 999999998 89999999999844 66666654
No 96
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.10 E-value=3e-10 Score=122.63 Aligned_cols=151 Identities=17% Similarity=0.126 Sum_probs=102.1
Q ss_pred HHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCC
Q 019145 72 VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGY 151 (345)
Q Consensus 72 ~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (345)
-+..++..+ .++||+||||||||++|+.+.... .+..+..++.+...+...+...+...........-...++
T Consensus 1259 ll~~~l~~~--~~vLL~GPpGtGKT~la~~~l~~~-----~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P 1331 (2695)
T 4akg_A 1259 IFYDLLNSK--RGIILCGPPGSGKTMIMNNALRNS-----SLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLP 1331 (2695)
T ss_dssp HHHHHHHHT--CEEEEECSTTSSHHHHHHHHHHSC-----SSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEE
T ss_pred HHHHHHHCC--CeEEEECCCCCCHHHHHHHHHhcC-----CCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccC
Confidence 344555555 379999999999999997666543 2456777777766665555555544321110000000011
Q ss_pred -CCCCeEEEEEcCCCCCCH------HHHHHHHHHHhhcC------------CceEEEEecCcc-----cccchhhhccce
Q 019145 152 -PCPPYKIIILDEADSMTE------DAQNALRRTMETYS------------KVTRFFFICNYI-----SRIIEPLASRCA 207 (345)
Q Consensus 152 -~~~~~~iliiDE~~~l~~------~~~~~l~~~le~~~------------~~~~ii~~~n~~-----~~l~~~l~~r~~ 207 (345)
..+++.|++|||++.... ...+.|.++++... .++.+|.++|++ ..+++++.+||.
T Consensus 1332 ~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~ 1411 (2695)
T 4akg_A 1332 KSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAA 1411 (2695)
T ss_dssp BSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEE
T ss_pred CCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheee
Confidence 123456999999876532 47788888887421 235678888887 479999999999
Q ss_pred eEEecCCCHHHHHHHHHHHHHH
Q 019145 208 KFRFKPLSEEVMSSRVLHICNE 229 (345)
Q Consensus 208 ~i~~~~~~~~~~~~~l~~~~~~ 229 (345)
++.++.|+.+++..++..+...
T Consensus 1412 vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1412 ILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp EEECCCCTTTHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999888764
No 97
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=99.09 E-value=3.7e-10 Score=91.03 Aligned_cols=119 Identities=22% Similarity=0.322 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHcCCC-CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCC
Q 019145 67 EEVVRVLTNTLETANC-PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSG 145 (345)
Q Consensus 67 ~~~~~~l~~~l~~~~~-~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (345)
...+..++.+++.-.. .+++|+||||||||++|.++++.+.+ .++.+..... . +. ..
T Consensus 42 ~~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g------~i~~fans~s-~----------f~-l~---- 99 (212)
T 1tue_A 42 ITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQG------AVISFVNSTS-H----------FW-LE---- 99 (212)
T ss_dssp HHHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTC------EECCCCCSSS-C----------GG-GG----
T ss_pred HHHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCC------CeeeEEeccc-h----------hh-hc----
Confidence 4456777777775322 25899999999999999999999832 2222211110 0 00 00
Q ss_pred CCCCCCCCCCeEEEEEcCCCCCCHHH-HHHHHHHHhhcC-------------CceEEEEecCc---ccccchhhhcccee
Q 019145 146 QRRGGYPCPPYKIIILDEADSMTEDA-QNALRRTMETYS-------------KVTRFFFICNY---ISRIIEPLASRCAK 208 (345)
Q Consensus 146 ~~~~~~~~~~~~iliiDE~~~l~~~~-~~~l~~~le~~~-------------~~~~ii~~~n~---~~~l~~~l~~r~~~ 208 (345)
...+.+++++||++.-.... ...+..+++..+ ...++|+|||. .....+.|.+|+..
T Consensus 100 ------~l~~~kIiiLDEad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~~ 173 (212)
T 1tue_A 100 ------PLTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITV 173 (212)
T ss_dssp ------GGTTCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCEE
T ss_pred ------ccCCCCEEEEECCCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEEE
Confidence 00124599999998432222 235666666532 13578999986 34455789999998
Q ss_pred EEecC
Q 019145 209 FRFKP 213 (345)
Q Consensus 209 i~~~~ 213 (345)
+.|+.
T Consensus 174 f~F~~ 178 (212)
T 1tue_A 174 FEFPN 178 (212)
T ss_dssp EECCS
T ss_pred EEcCC
Confidence 88873
No 98
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.87 E-value=1.9e-07 Score=101.23 Aligned_cols=169 Identities=22% Similarity=0.251 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCC
Q 019145 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ 146 (345)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (345)
++....+..++..+. ..++.||+|||||++++.+|+.+ +..++.++|.+......+...+.......
T Consensus 632 dr~~~tl~~Al~~~~--~~~l~GpaGtGKTe~vk~LA~~l------g~~~v~~nc~e~ld~~~lg~~~~g~~~~G----- 698 (2695)
T 4akg_A 632 LIGFATLTDSLHQKY--GGCFFGPAGTGKTETVKAFGQNL------GRVVVVFNCDDSFDYQVLSRLLVGITQIG----- 698 (2695)
T ss_dssp HHHHHHHHHHHHTTC--EEEEECCTTSCHHHHHHHHHHTT------TCCCEEEETTSSCCHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHhCC--CCcccCCCCCCcHHHHHHHHHHh------CCcEEEEECCCCCChhHhhHHHHHHHhcC-----
Confidence 344456666666554 57899999999999999999999 88899999998888777766666554432
Q ss_pred CCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHH-------Hhhc-------------CCceEEEEecCc----ccccchhh
Q 019145 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRT-------METY-------------SKVTRFFFICNY----ISRIIEPL 202 (345)
Q Consensus 147 ~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~-------le~~-------------~~~~~ii~~~n~----~~~l~~~l 202 (345)
..+++||++.++.+++..+.+. +.+. .+.+.+++|.|+ ...+++.+
T Consensus 699 ----------aw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~L 768 (2695)
T 4akg_A 699 ----------AWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENL 768 (2695)
T ss_dssp ----------CEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHH
T ss_pred ----------CEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHH
Confidence 3899999999999887766333 2211 234556777773 45689999
Q ss_pred hccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------hc------CCCHHHHHHHHHHHH
Q 019145 203 ASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSS-------IS------QGDLRRAITYLQGAA 261 (345)
Q Consensus 203 ~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~-------~s------~g~~r~~~~~l~~~~ 261 (345)
++||..+.+..|+.+.+.+++.. ..|+...+.....++. .. ...+|.+...|..+.
T Consensus 769 k~~Fr~v~m~~Pd~~~i~ei~l~---s~Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag 837 (2695)
T 4akg_A 769 KKSFREFSMKSPQSGTIAEMILQ---IMGFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCS 837 (2695)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHH---HHHCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHH
T ss_pred HhheEEEEeeCCCHHHHHHHHHH---hcCCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHH
Confidence 99999999999999988888643 3455544444443332 11 235777777666544
No 99
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.85 E-value=1.4e-08 Score=110.54 Aligned_cols=184 Identities=13% Similarity=0.106 Sum_probs=118.2
Q ss_pred HHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcC--CCCCC
Q 019145 72 VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGS--GQRRG 149 (345)
Q Consensus 72 ~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 149 (345)
-+..++..+. ++||+||||||||.++..+...+ .+..++.++.+...+...+...+.......... +.. .
T Consensus 1296 ll~~ll~~~~--pvLL~GptGtGKT~li~~~L~~l-----~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~-~ 1367 (3245)
T 3vkg_A 1296 VLHAWLSEHR--PLILCGPPGSGKTMTLTSTLRAF-----PDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETV-L 1367 (3245)
T ss_dssp HHHHHHHTTC--CCEEESSTTSSHHHHHHHHGGGC-----TTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEE-E
T ss_pred HHHHHHHCCC--cEEEECCCCCCHHHHHHHHHHhC-----CCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcc-c
Confidence 4455555543 69999999999998887665544 134567788887777666655554322211110 100 1
Q ss_pred CCC-CCCeEEEEEcCCCCCCH------HHHHHHHHHHhhcC------------CceEEEEecCcc-----cccchhhhcc
Q 019145 150 GYP-CPPYKIIILDEADSMTE------DAQNALRRTMETYS------------KVTRFFFICNYI-----SRIIEPLASR 205 (345)
Q Consensus 150 ~~~-~~~~~iliiDE~~~l~~------~~~~~l~~~le~~~------------~~~~ii~~~n~~-----~~l~~~l~~r 205 (345)
.+. .++.-|++|||++.-.. ...+.|.++++... .++.+|.++|++ ..+.+++.+|
T Consensus 1368 ~p~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~ 1447 (3245)
T 3vkg_A 1368 RPTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRH 1447 (3245)
T ss_dssp EESSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTT
T ss_pred CCCcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhh
Confidence 122 24567999999987653 47888999988421 245677777765 4588999999
Q ss_pred ceeEEecCCCHHHHHHHHHHHHHHhCC------CCCHHHHHHHHHh---------------cCCCHHHHHHHHHHHHHH
Q 019145 206 CAKFRFKPLSEEVMSSRVLHICNEEGL------NLDAEALSTLSSI---------------SQGDLRRAITYLQGAARL 263 (345)
Q Consensus 206 ~~~i~~~~~~~~~~~~~l~~~~~~~~~------~i~~~~~~~l~~~---------------s~g~~r~~~~~l~~~~~~ 263 (345)
|.++.++.|+.+++..+...+....-- .+.+..++..++. .--|+|++.+.++-+...
T Consensus 1448 F~vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qGll~~ 1526 (3245)
T 3vkg_A 1448 APILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALLEA 1526 (3245)
T ss_dssp CCEEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHHHHHH
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHHHHHh
Confidence 999999999999999997776543211 1223333333321 123888888888766543
No 100
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.82 E-value=6.6e-08 Score=92.59 Aligned_cols=189 Identities=12% Similarity=0.060 Sum_probs=105.5
Q ss_pred hCCCCCccccccHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhc--CCCCCCCceeeeecCCccchHHH
Q 019145 55 YRPKQVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLF--GPELYKSRVLELNASDDRGINVV 130 (345)
Q Consensus 55 ~~p~~~~~~~g~~~~~~~l~~~l~~~--~~~~lll~G~~G~GKT~la~~la~~l~--~~~~~~~~~~~~~~~~~~~~~~~ 130 (345)
-.|.....++|++..+..|..++... ....+.|+||+|+|||++|..+++... ...+ ...++.++...... ..+
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f-~~~v~wv~~~~~~~-~~~ 195 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCF-PGGVHWVSVGKQDK-SGL 195 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHC-TTCEEEEEEESCCH-HHH
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhC-CCceEEEECCCCch-HHH
Confidence 34666678999999999999999742 333479999999999999999875320 0111 11233333222111 111
Q ss_pred HHHHHHHHHhhhc-CCC--CCCCC-------------CCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCc
Q 019145 131 RTKIKTFAAVAVG-SGQ--RRGGY-------------PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (345)
Q Consensus 131 ~~~~~~~~~~~~~-~~~--~~~~~-------------~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~ 194 (345)
...+......... ... ..... ...++-+||+||++.. . .++..+....+|+||..
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~-------~l~~l~~~~~ilvTsR~ 266 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--W-------VLKAFDSQCQILLTTRD 266 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--H-------HHHTTCSSCEEEEEESC
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--H-------HHHHhcCCCeEEEECCC
Confidence 1112111111000 000 00000 0013469999999752 1 12233566778888765
Q ss_pred ccccchhhhccceeEEe---cCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 019145 195 ISRIIEPLASRCAKFRF---KPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQ 258 (345)
Q Consensus 195 ~~~l~~~l~~r~~~i~~---~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~ 258 (345)
.... ..+. ...+.+ .+++.++..+++...+... ..-.++.+..|++.|+|.+-.+.....
T Consensus 267 ~~~~-~~~~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~-~~~~~~~~~~i~~~~~G~PLal~~~a~ 329 (591)
T 1z6t_A 267 KSVT-DSVM--GPKYVVPVESSLGKEKGLEILSLFVNMK-KADLPEQAHSIIKECKGSPLVVSLIGA 329 (591)
T ss_dssp GGGG-TTCC--SCEEEEECCSSCCHHHHHHHHHHHHTSC-GGGSCTHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHH-HhcC--CCceEeecCCCCCHHHHHHHHHHHhCCC-cccccHHHHHHHHHhCCCcHHHHHHHH
Confidence 4321 1111 223343 4899999999998776321 111246788999999999877554443
No 101
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.63 E-value=4e-07 Score=86.24 Aligned_cols=180 Identities=13% Similarity=0.119 Sum_probs=101.1
Q ss_pred cccHHHHHHHHHHHHcC---CCCcEEEeCCCCCCHHHHHHHHHH---HhcCCCCCCCceeeeecCCcc--ch-HHHHHHH
Q 019145 64 AHQEEVVRVLTNTLETA---NCPHMLFYGPPGTGKTTTALAIAH---QLFGPELYKSRVLELNASDDR--GI-NVVRTKI 134 (345)
Q Consensus 64 ~g~~~~~~~l~~~l~~~---~~~~lll~G~~G~GKT~la~~la~---~l~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~ 134 (345)
+|++..+..|.+++..+ ....+.|+|++|+|||++|+.+++ ......+ .. .+.++.+... +. ......+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F-~~-~~wv~vs~~~~~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINY-DS-IVWLKDSGTAPKSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTB-SE-EEEEECCCCSTTHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccC-Cc-EEEEEECCCCCCCHHHHHHHHH
Confidence 39999999999998655 234479999999999999999997 2222333 22 2223333321 12 2222222
Q ss_pred HHHHHhhh-cCCCCCCC------------CCCCC-eEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccch
Q 019145 135 KTFAAVAV-GSGQRRGG------------YPCPP-YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIE 200 (345)
Q Consensus 135 ~~~~~~~~-~~~~~~~~------------~~~~~-~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~ 200 (345)
..+..... ........ ...++ +-+||+|+++... .. .+... ....+|+||.... +..
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~--~~----~~~~~--~gs~ilvTTR~~~-v~~ 279 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE--TI----RWAQE--LRLRCLVTTRDVE-ISN 279 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH--HH----HHHHH--TTCEEEEEESBGG-GGG
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch--hh----ccccc--CCCEEEEEcCCHH-HHH
Confidence 22211100 00000000 01233 6799999998732 11 11111 4566777776533 222
Q ss_pred hhhccceeEEecCCCHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHhcCCCHHHHH
Q 019145 201 PLASRCAKFRFKPLSEEVMSSRVLHICNEEGL-NLDAEALSTLSSISQGDLRRAI 254 (345)
Q Consensus 201 ~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~-~i~~~~~~~l~~~s~g~~r~~~ 254 (345)
.+......+.+.+++.++..+++.+.+-.... .-.++....|++.|+|.+-.+.
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~ 334 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLM 334 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHH
Confidence 22112246899999999999998776422111 1123468889999999886654
No 102
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.59 E-value=4.3e-07 Score=72.68 Aligned_cols=69 Identities=14% Similarity=0.270 Sum_probs=48.4
Q ss_pred CeEEEEEcCCC---CCCHHHHHHHHHHHhhcCCceEEEEec--Ccccccchhhhcc--ceeEEecCCCHHHHHHHHHH
Q 019145 155 PYKIIILDEAD---SMTEDAQNALRRTMETYSKVTRFFFIC--NYISRIIEPLASR--CAKFRFKPLSEEVMSSRVLH 225 (345)
Q Consensus 155 ~~~iliiDE~~---~l~~~~~~~l~~~le~~~~~~~ii~~~--n~~~~l~~~l~~r--~~~i~~~~~~~~~~~~~l~~ 225 (345)
+++++++||++ .++....+.+.+.+++. ...+|+++ +....+...+.+| +.++.+.+.+.+++...+..
T Consensus 99 ~p~llilDEigp~~~ld~~~~~~l~~~l~~~--~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~~l~~ 174 (178)
T 1ye8_A 99 RRKVIIIDEIGKMELFSKKFRDLVRQIMHDP--NVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDILS 174 (178)
T ss_dssp TTCEEEECCCSTTGGGCHHHHHHHHHHHTCT--TSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHHHHH
T ss_pred CCCEEEEeCCCCcccCCHHHHHHHHHHHhcC--CCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHHHHHH
Confidence 44699999954 45677888899999873 33345555 3445566778887 67899988887777666543
No 103
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.55 E-value=3.9e-06 Score=87.08 Aligned_cols=192 Identities=10% Similarity=0.047 Sum_probs=109.9
Q ss_pred hCCCCCccccccHHHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHh--cCCCCCCCceeeeecCCccchHHH
Q 019145 55 YRPKQVKDVAHQEEVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQL--FGPELYKSRVLELNASDDRGINVV 130 (345)
Q Consensus 55 ~~p~~~~~~~g~~~~~~~l~~~l~~~--~~~~lll~G~~G~GKT~la~~la~~l--~~~~~~~~~~~~~~~~~~~~~~~~ 130 (345)
--|.....++|++..+..|.+.+... ....+.|+|++|+|||++|..+++.. ....+ ...++.++.........
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~- 195 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCF-SGGVHWVSIGKQDKSGL- 195 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTS-TTCEEEEECCSCCHHHH-
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhC-CCeEEEEEECCcCchHH-
Confidence 35666678999999999999999643 23347899999999999999887653 11112 22233333333212111
Q ss_pred HHHHHHHHHhhhcCCCCCCC----------------CCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCc
Q 019145 131 RTKIKTFAAVAVGSGQRRGG----------------YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNY 194 (345)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~ 194 (345)
...+................ ....++-+||+|+++.. . .++...+...+|+||..
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~-------~~~~~~~~~~ilvTtR~ 266 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--W-------VLKAFDNQCQILLTTRD 266 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--H-------HHTTTCSSCEEEEEESS
T ss_pred HHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--H-------HHHhhcCCCEEEEEcCC
Confidence 11111111110000000000 00123569999999853 1 22333556778888865
Q ss_pred ccccchhhhccceeEEecC-CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 019145 195 ISRIIEPLASRCAKFRFKP-LSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQG 259 (345)
Q Consensus 195 ~~~l~~~l~~r~~~i~~~~-~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~~s~g~~r~~~~~l~~ 259 (345)
..- ...+......+...+ ++.++..+++...+.... .-.++....|++.++|.+-.+......
T Consensus 267 ~~~-~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-~~~~~~~~~i~~~~~glPLal~~~~~~ 330 (1249)
T 3sfz_A 267 KSV-TDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-EDLPAEAHSIIKECKGSPLVVSLIGAL 330 (1249)
T ss_dssp TTT-TTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-TTCCTHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHH-HHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-hhCcHHHHHHHHHhCCCHHHHHHHHHH
Confidence 432 212222334677775 999999999987763322 223456889999999988765443333
No 104
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.50 E-value=1.3e-05 Score=87.90 Aligned_cols=171 Identities=19% Similarity=0.227 Sum_probs=120.9
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCC
Q 019145 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ 146 (345)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (345)
++....+..++..+. ...+.||+|||||.+++.+|+.+ +..++.++|.+......+...+.......
T Consensus 591 drcy~tl~~Al~~~~--gg~~~GPaGtGKTet~k~La~~l------gr~~~vfnC~~~~d~~~~g~i~~G~~~~G----- 657 (3245)
T 3vkg_A 591 DRCYLTLTQALESRM--GGNPFGPAGTGKTETVKALGSQL------GRFVLVFCCDEGFDLQAMSRIFVGLCQCG----- 657 (3245)
T ss_dssp HHHHHHHHHHHHTTC--EEEEECSTTSSHHHHHHHHHHHT------TCCEEEEECSSCCCHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHhcC--CCCCCCCCCCCHHHHHHHHHHHh------CCeEEEEeCCCCCCHHHHHHHHhhHhhcC-----
Confidence 344456666666554 35789999999999999999999 78889999998877776666666654432
Q ss_pred CCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHh-------h--------------cCCceEEEEecCc----ccccchh
Q 019145 147 RRGGYPCPPYKIIILDEADSMTEDAQNALRRTME-------T--------------YSKVTRFFFICNY----ISRIIEP 201 (345)
Q Consensus 147 ~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le-------~--------------~~~~~~ii~~~n~----~~~l~~~ 201 (345)
...++||++.+..+++..+.+.+. + ..+.+.+++|.|+ ...+++.
T Consensus 658 ----------aW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~n 727 (3245)
T 3vkg_A 658 ----------AWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDN 727 (3245)
T ss_dssp ----------CEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHH
T ss_pred ----------cEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHH
Confidence 278999999999887776555443 1 1134567777774 3568999
Q ss_pred hhccceeEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH---h-----c-----CCCHHHHHHHHHHHHHH
Q 019145 202 LASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSS---I-----S-----QGDLRRAITYLQGAARL 263 (345)
Q Consensus 202 l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~~l~~---~-----s-----~g~~r~~~~~l~~~~~~ 263 (345)
++.+|..+.+..|+.+.+.+++. -.+|+.-.......++. . | +-.+|.+...|..+...
T Consensus 728 Lk~lFr~v~m~~Pd~~~i~ei~L---~s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG~l 799 (3245)
T 3vkg_A 728 LKKLFRSMAMIKPDREMIAQVML---YSQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGI 799 (3245)
T ss_dssp HHTTEEEEECCSCCHHHHHHHHH---HTTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHHHH
T ss_pred HHhhcEEEEEeCCCHHHHHHHHH---HHcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHH
Confidence 99999999999999999888863 35576543433333321 1 1 23488888877766543
No 105
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.50 E-value=2.1e-07 Score=75.77 Aligned_cols=59 Identities=12% Similarity=0.135 Sum_probs=40.7
Q ss_pred eEEEEEcCCCCC--CH-HHH--HHHHHHHh-hcCCceEEEEecCcccccchhhhccce-eEEecCC
Q 019145 156 YKIIILDEADSM--TE-DAQ--NALRRTME-TYSKVTRFFFICNYISRIIEPLASRCA-KFRFKPL 214 (345)
Q Consensus 156 ~~iliiDE~~~l--~~-~~~--~~l~~~le-~~~~~~~ii~~~n~~~~l~~~l~~r~~-~i~~~~~ 214 (345)
..+|||||++.+ +. ... ..++..++ .......+|++++++..+...+++|+. .+++.++
T Consensus 88 ~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~ 153 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASN 153 (199)
T ss_dssp TCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEEC
T ss_pred ceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCc
Confidence 469999999998 22 111 12444444 334456788999889999999999987 5677663
No 106
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.40 E-value=7.3e-07 Score=84.49 Aligned_cols=120 Identities=23% Similarity=0.274 Sum_probs=68.6
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHH-------HHHHH
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTK-------IKTFA 138 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 138 (345)
.+.....+...+. .+.++++||||||||+++..++..+... +..+. +.++.......+.+. +..+.
T Consensus 191 ~~~Q~~Av~~~~~---~~~~~I~G~pGTGKTt~i~~l~~~l~~~---g~~Vl-~~ApT~~Aa~~L~e~~~~~a~Tih~ll 263 (574)
T 3e1s_A 191 SEEQASVLDQLAG---HRLVVLTGGPGTGKSTTTKAVADLAESL---GLEVG-LCAPTGKAARRLGEVTGRTASTVHRLL 263 (574)
T ss_dssp CHHHHHHHHHHTT---CSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEE-EEESSHHHHHHHHHHHTSCEEEHHHHT
T ss_pred CHHHHHHHHHHHh---CCEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEE-EecCcHHHHHHhHhhhcccHHHHHHHH
Confidence 3455555554442 3468999999999999999999877432 23343 333332222322221 11111
Q ss_pred HhhhcCCCCCCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCccc
Q 019145 139 AVAVGSGQRRGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (345)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~ 196 (345)
.... ...........++++|||||+.+++......|++.+ +....+|++++...
T Consensus 264 ~~~~-~~~~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~~~---~~~~~lilvGD~~Q 317 (574)
T 3e1s_A 264 GYGP-QGFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAV---PPGARVLLVGDTDQ 317 (574)
T ss_dssp TEET-TEESCSSSSCCSCSEEEECCGGGCCHHHHHHHHTTS---CTTCEEEEEECTTS
T ss_pred cCCc-chhhhhhcccccCCEEEEcCccCCCHHHHHHHHHhC---cCCCEEEEEecccc
Confidence 1111 000011111235679999999999988777776655 45677888886543
No 107
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.32 E-value=1.7e-07 Score=75.55 Aligned_cols=50 Identities=10% Similarity=0.042 Sum_probs=35.9
Q ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecC------cccccchhhhccce
Q 019145 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN------YISRIIEPLASRCA 207 (345)
Q Consensus 155 ~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n------~~~~l~~~l~~r~~ 207 (345)
+.++|+|||++.++++..+.+..+.+. ...+|+++. ++....+.+.++++
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~---~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad 131 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDR---GIDVFCAGLDLTHKQNPFETTALLLSLAD 131 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHT---TCEEEEEEESBCTTSCBCHHHHHHHHHCS
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHC---CCCEEEEeeccccccCCccchHHHHHHhh
Confidence 578999999999987777777777765 445666553 44455667777775
No 108
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.31 E-value=1.3e-05 Score=79.56 Aligned_cols=153 Identities=14% Similarity=0.141 Sum_probs=82.3
Q ss_pred ccccHHHHHHHHHHHHc-CCCCcEEEeCCCCCCHHHHHHHHHHHhc-CCCCCCCceeeeecCCccchHHHHHHHHHH-HH
Q 019145 63 VAHQEEVVRVLTNTLET-ANCPHMLFYGPPGTGKTTTALAIAHQLF-GPELYKSRVLELNASDDRGINVVRTKIKTF-AA 139 (345)
Q Consensus 63 ~~g~~~~~~~l~~~l~~-~~~~~lll~G~~G~GKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 139 (345)
.+|++..+..|.+++.. ...+.+.|+|++|+|||++|+.+++... ...+ ...++.++.+.......+...+... ..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~F-d~gV~WVsVs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM-DFKIFWLNLKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHH-SSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhC-CCcEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 38999999999999876 3344579999999999999999986320 0111 2222333333322222221111111 11
Q ss_pred hhhcCCCCCC-----------------C---CCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcccccc
Q 019145 140 VAVGSGQRRG-----------------G---YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRII 199 (345)
Q Consensus 140 ~~~~~~~~~~-----------------~---~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~ 199 (345)
.......... . ....++-+||+|+++. .+..+. + +....+|+||......
T Consensus 209 i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~----f---~pGSRILVTTRd~~Va- 278 (1221)
T 1vt4_I 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNA----F---NLSCKILLTTRFKQVT- 278 (1221)
T ss_dssp HCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHH----H---HSSCCEEEECSCSHHH-
T ss_pred cCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHh----h---CCCeEEEEeccChHHH-
Confidence 0000000000 0 0123456999999987 222222 2 2556788888654422
Q ss_pred hhhhccceeEEec------CCCHHHHHHHHHHHH
Q 019145 200 EPLASRCAKFRFK------PLSEEVMSSRVLHIC 227 (345)
Q Consensus 200 ~~l~~r~~~i~~~------~~~~~~~~~~l~~~~ 227 (345)
..+.. ...+.+. +++.++..+++...+
T Consensus 279 ~~l~g-~~vy~LeL~d~dL~LS~eEA~eLF~~~~ 311 (1221)
T 1vt4_I 279 DFLSA-ATTTHISLDHHSMTLTPDEVKSLLLKYL 311 (1221)
T ss_dssp HHHHH-HSSCEEEECSSSSCCCHHHHHHHHHHHH
T ss_pred HhcCC-CeEEEecCccccCCcCHHHHHHHHHHHc
Confidence 11111 1134444 789999999987764
No 109
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=98.16 E-value=2.4e-06 Score=68.61 Aligned_cols=109 Identities=14% Similarity=0.146 Sum_probs=65.0
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC-CccchHHH-----------------------------H
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS-DDRGINVV-----------------------------R 131 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~-~~~~~~~~-----------------------------~ 131 (345)
...+++++++|.||||+|-.++..+.+.+ ....++.+... ...+...+ .
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G-~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHG-KNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTT-CCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 34689999999999999999998875432 12222222111 11111111 1
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCCeEEEEEcCC------CCCCHHHHHHHHHHHhhcCCceEEEEecCcccccchhhhcc
Q 019145 132 TKIKTFAAVAVGSGQRRGGYPCPPYKIIILDEA------DSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASR 205 (345)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~iliiDE~------~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~~l~~~l~~r 205 (345)
..+...... ...+.+++||+||+ +.++.+ .+++++.+.+....+|+|+|.. ++.|...
T Consensus 107 ~~l~~a~~~----------l~~~~yDlvILDEi~~al~~g~l~~~---ev~~~l~~Rp~~~~vIlTGr~a---p~~l~e~ 170 (196)
T 1g5t_A 107 AVWQHGKRM----------LADPLLDMVVLDELTYMVAYDYLPLE---EVISALNARPGHQTVIITGRGC---HRDILDL 170 (196)
T ss_dssp HHHHHHHHH----------TTCTTCSEEEEETHHHHHHTTSSCHH---HHHHHHHTSCTTCEEEEECSSC---CHHHHHH
T ss_pred HHHHHHHHH----------HhcCCCCEEEEeCCCccccCCCCCHH---HHHHHHHhCcCCCEEEEECCCC---cHHHHHh
Confidence 111111111 12246889999998 445443 4888888889999999999875 3455555
Q ss_pred ce
Q 019145 206 CA 207 (345)
Q Consensus 206 ~~ 207 (345)
.+
T Consensus 171 AD 172 (196)
T 1g5t_A 171 AD 172 (196)
T ss_dssp CS
T ss_pred Cc
Confidence 54
No 110
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.15 E-value=8.7e-06 Score=77.86 Aligned_cols=110 Identities=18% Similarity=0.203 Sum_probs=61.0
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCC-CCCCCceeeeecCCccchHHHHHHHHHHHHhhh-c---------CCC---C-
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGP-ELYKSRVLELNASDDRGINVVRTKIKTFAAVAV-G---------SGQ---R- 147 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~---~- 147 (345)
+.++++|+||||||+++..+...+... ......+. +-++.......+.+.+........ . ... .
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vl-l~APTg~AA~~L~e~~~~~~~~l~l~~~~~~~~~~~~~Tih~l 243 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIR-LAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRL 243 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEE-EEBSSHHHHHHHHHHHTHHHHHSSCCSCCCCSCSCCCBTTTSC
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEE-EEeCChhHHHHHHHHHHHHHhcCCCCHHHHhccchhhhhhHhh
Confidence 458999999999999999888776321 01122333 333333333333333322111000 0 000 0
Q ss_pred ----C-------CCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCccc
Q 019145 148 ----R-------GGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (345)
Q Consensus 148 ----~-------~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~ 196 (345)
+ ........++|||||+++++......|+..+ +....+|++++...
T Consensus 244 l~~~~~~~~~~~~~~~~l~~d~lIIDEAsml~~~~~~~Ll~~l---~~~~~liLvGD~~Q 300 (608)
T 1w36_D 244 LGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDAL---PDHARVIFLGDRDQ 300 (608)
T ss_dssp C-----------CTTSCCSCSEEEECSGGGCBHHHHHHHHHTC---CTTCEEEEEECTTS
T ss_pred hccCCCchHHHhccCCCCCCCEEEEechhhCCHHHHHHHHHhC---CCCCEEEEEcchhh
Confidence 0 0001124679999999999877666666554 56778899886543
No 111
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.09 E-value=1.5e-05 Score=65.84 Aligned_cols=93 Identities=16% Similarity=0.105 Sum_probs=52.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc-cc----------------hHHHHHHHHHHHHhhhcCCCC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD-RG----------------INVVRTKIKTFAAVAVGSGQR 147 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~-~~----------------~~~~~~~~~~~~~~~~~~~~~ 147 (345)
++++||+|+||||++..++..+.... ..++.+..... .+ .....+........
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g---~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~------- 84 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYAD---VKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSN------- 84 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTT---CCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHST-------
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcC---CEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHH-------
Confidence 68999999999999988888773221 12222211110 00 00011111111110
Q ss_pred CCCCCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecC
Q 019145 148 RGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICN 193 (345)
Q Consensus 148 ~~~~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n 193 (345)
....++++|+|||++.++.+..+.+..+.+. ...+|+++.
T Consensus 85 ---~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~~---gi~Vil~Gl 124 (223)
T 2b8t_A 85 ---SFNDETKVIGIDEVQFFDDRICEVANILAEN---GFVVIISGL 124 (223)
T ss_dssp ---TSCTTCCEEEECSGGGSCTHHHHHHHHHHHT---TCEEEEECC
T ss_pred ---hhCCCCCEEEEecCccCcHHHHHHHHHHHhC---CCeEEEEec
Confidence 0113467999999999988776666554442 566777764
No 112
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.06 E-value=1.4e-05 Score=69.27 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=19.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
++|+||||+|||+++..++..
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHh
Confidence 699999999999999999987
No 113
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.89 E-value=0.00016 Score=59.31 Aligned_cols=133 Identities=10% Similarity=0.098 Sum_probs=69.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhc-----CCCCC-CCC---CCC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVG-----SGQRR-GGY---PCP 154 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~---~~~ 154 (345)
++++.|+||+||||++-.++..+... +...-++.++... .... ...+......+.. ..... ... ...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~-G~~V~v~d~D~q~--~~~~-~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~~ 83 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ-GVRVMAGVVETHG--RAET-EALLNGLPQQPLLRTEYRGMTLEEMDLDALLKA 83 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT-TCCEEEEECCCTT--CHHH-HHHHTTSCBCCCEEEEETTEEEEECCHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC-CCCEEEEEeCCCC--ChhH-HHHhcCccccCcceeecCCcccccccHHHHHhc
Confidence 58999999999999999999987432 2222223333211 1111 1111111000000 00000 000 012
Q ss_pred CeEEEEEcCCCCCCH------HHHHHHHHHHhhcCCceEEEEecCc------------------ccccchhhhccceeEE
Q 019145 155 PYKIIILDEADSMTE------DAQNALRRTMETYSKVTRFFFICNY------------------ISRIIEPLASRCAKFR 210 (345)
Q Consensus 155 ~~~iliiDE~~~l~~------~~~~~l~~~le~~~~~~~ii~~~n~------------------~~~l~~~l~~r~~~i~ 210 (345)
++++++|||+.+.+. .....+...++ ....++.++|- ...+++.+...+..+.
T Consensus 84 ~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~---sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~v~ 160 (228)
T 2r8r_A 84 APSLVLVDELAHTNAPGSRHTKRWQDIQELLA---AGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFDLV 160 (228)
T ss_dssp CCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH---TTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSEEE
T ss_pred CCCEEEEeCCCCCCcccchhHHHHHHHHHHHc---CCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCeEE
Confidence 457999999887531 12233333332 34456666641 1346778888887777
Q ss_pred ecCCCHHHHHHHH
Q 019145 211 FKPLSEEVMSSRV 223 (345)
Q Consensus 211 ~~~~~~~~~~~~l 223 (345)
+-.++.+++...+
T Consensus 161 lvD~~p~~l~~rl 173 (228)
T 2r8r_A 161 LIDLPPRELLERL 173 (228)
T ss_dssp EBCCCHHHHHHHH
T ss_pred EecCCHHHHHHHH
Confidence 7778888877664
No 114
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.82 E-value=7.6e-05 Score=62.46 Aligned_cols=38 Identities=26% Similarity=0.308 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.....+..++.. .+++++||+|+|||.++..++..+
T Consensus 95 ~~~Q~~ai~~~~~~---~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 95 RDYQEKALERWLVD---KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CHHHHHHHHHHTTT---SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhC---CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 45555555555543 249999999999999999888876
No 115
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.80 E-value=0.00029 Score=55.85 Aligned_cols=21 Identities=38% Similarity=0.485 Sum_probs=19.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~ 104 (345)
.++|.|+||+||||+++.+++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 379999999999999999998
No 116
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.75 E-value=0.0011 Score=54.44 Aligned_cols=23 Identities=30% Similarity=0.595 Sum_probs=21.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+||||+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999887
No 117
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.74 E-value=3.6e-05 Score=62.65 Aligned_cols=102 Identities=14% Similarity=0.073 Sum_probs=51.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCc-c-chHHHHHHHHHHHH-hhhcCCCCCCCCCCCCeEEEEE
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDD-R-GINVVRTKIKTFAA-VAVGSGQRRGGYPCPPYKIIIL 161 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ilii 161 (345)
.+++||.|+||||.+-.++..+... +..++.+..... + +...+.+.+..... ...............++++|+|
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~---g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~~~~dvViI 107 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFA---KQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHITEEMDVIAI 107 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEECC-----------------CCEEECSSGGGGGGGCCSSCCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHHhcCCCEEEE
Confidence 4799999999999988888776332 234444433221 1 11111111110000 0000000000001124789999
Q ss_pred cCCCCCCHHHHHHHHHHHhhcCCceEEEEec
Q 019145 162 DEADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 162 DE~~~l~~~~~~~l~~~le~~~~~~~ii~~~ 192 (345)
||++.++++..+.+..+.+. ...+|+++
T Consensus 108 DEaQF~~~~~V~~l~~l~~~---~~~Vi~~G 135 (214)
T 2j9r_A 108 DEVQFFDGDIVEVVQVLANR---GYRVIVAG 135 (214)
T ss_dssp CCGGGSCTTHHHHHHHHHHT---TCEEEEEE
T ss_pred ECcccCCHHHHHHHHHHhhC---CCEEEEEe
Confidence 99999988777655554432 55677776
No 118
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.73 E-value=3.5e-05 Score=61.68 Aligned_cols=99 Identities=13% Similarity=0.086 Sum_probs=49.5
Q ss_pred EEEeCCCCCCHH-HHHHHHHHHhcCCCCCCCceeeeecC-CccchHHHHHHHHHHHHh-hhcCCCCCCCCCCCCeEEEEE
Q 019145 85 MLFYGPPGTGKT-TTALAIAHQLFGPELYKSRVLELNAS-DDRGINVVRTKIKTFAAV-AVGSGQRRGGYPCPPYKIIIL 161 (345)
Q Consensus 85 lll~G~~G~GKT-~la~~la~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ilii 161 (345)
.+++||.|+||| +|++++.+.... +..++.+.+. +.+....+.+.+...... ........ .....+.++|+|
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~----~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~-~~~~~~~DvIlI 97 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIA----QYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDV-AQEALGVAVIGI 97 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT----TCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGG-HHHHHTCSEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHc----CCeEEEEccccCccchhhhhhccCCcccceecCCHHHH-HHhccCCCEEEE
Confidence 599999999999 888988887633 2444444433 111111111111100000 00000000 000123469999
Q ss_pred cCCCCCCHHHHHHHHHHHhhcCCceEEEEec
Q 019145 162 DEADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 162 DE~~~l~~~~~~~l~~~le~~~~~~~ii~~~ 192 (345)
||++.+ ++..+.+ +.+.+ ....+|+++
T Consensus 98 DEaQFf-k~~ve~~-~~L~~--~gk~VI~~G 124 (195)
T 1w4r_A 98 DEGQFF-PDIVEFC-EAMAN--AGKTVIVAA 124 (195)
T ss_dssp SSGGGC-TTHHHHH-HHHHH--TTCEEEEEE
T ss_pred Echhhh-HHHHHHH-HHHHH--CCCeEEEEe
Confidence 999999 6644444 44444 234566664
No 119
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.71 E-value=6.6e-05 Score=79.54 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=23.4
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 81 NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 81 ~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
...+++|+||||||||++|.+++.+..
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~ 1452 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQ 1452 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344699999999999999999998873
No 120
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.68 E-value=0.00085 Score=56.85 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=21.7
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|+|+||+||||+++.++..+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357999999999999999999985
No 121
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.64 E-value=0.00035 Score=56.16 Aligned_cols=72 Identities=15% Similarity=0.226 Sum_probs=45.0
Q ss_pred CCCeEEEEEcCCCCC---CHHHHHHHHHHHhhcCCceEEE--Ee-c-Ccccccchhhhcc--ceeEEecCCCHHHHHHHH
Q 019145 153 CPPYKIIILDEADSM---TEDAQNALRRTMETYSKVTRFF--FI-C-NYISRIIEPLASR--CAKFRFKPLSEEVMSSRV 223 (345)
Q Consensus 153 ~~~~~iliiDE~~~l---~~~~~~~l~~~le~~~~~~~ii--~~-~-n~~~~l~~~l~~r--~~~i~~~~~~~~~~~~~l 223 (345)
..+++++++||++.+ .....+.+.++++... . .++ ++ + +....+.+.+..+ +.++.+.+-+.+.+..-+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~-~-~ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~~~nr~~~~~~i 180 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPG-T-IILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPDI 180 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSS-C-CEEEECCCCCSSCCTTHHHHHTTCCSEEEECCSSSGGGHHHHH
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCCC-c-EEEEEeecCCCCchHHHHHHeecCCcEEEEeChHhHHHHHHHH
Confidence 346689999997655 4567788888887642 2 232 22 1 2222455666654 458888887877776666
Q ss_pred HHH
Q 019145 224 LHI 226 (345)
Q Consensus 224 ~~~ 226 (345)
...
T Consensus 181 ~~~ 183 (189)
T 2i3b_A 181 VTC 183 (189)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 122
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.61 E-value=0.0013 Score=53.94 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=21.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+||||+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999987
No 123
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.61 E-value=0.0024 Score=53.47 Aligned_cols=24 Identities=33% Similarity=0.674 Sum_probs=22.0
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|+||||+||||+++.+++.+
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999987
No 124
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.61 E-value=0.00039 Score=54.72 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=19.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+||||+||||+++.+ +.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 4789999999999999999 665
No 125
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.54 E-value=0.0047 Score=57.76 Aligned_cols=70 Identities=13% Similarity=0.159 Sum_probs=49.7
Q ss_pred CeEEEEEcCCCCC----CHHHHHHHHHHHhhcC-CceEEEEecCccc--ccchhhhccce-eEEecCCCHHHHHHHHH
Q 019145 155 PYKIIILDEADSM----TEDAQNALRRTMETYS-KVTRFFFICNYIS--RIIEPLASRCA-KFRFKPLSEEVMSSRVL 224 (345)
Q Consensus 155 ~~~iliiDE~~~l----~~~~~~~l~~~le~~~-~~~~ii~~~n~~~--~l~~~l~~r~~-~i~~~~~~~~~~~~~l~ 224 (345)
++-+|||||++.+ .++..+.|.++..... ..+.+|+++..+. .+...+++.+. .+.|.-.+..+...++.
T Consensus 343 P~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 343 PTIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp CEEEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred CcEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 4569999999977 3445556666665543 4566777776665 67777888776 68888888888777763
No 126
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.51 E-value=7.2e-05 Score=59.88 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.9
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++|+|++|+||||+++.+++.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999999998
No 127
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.49 E-value=0.00029 Score=56.62 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=25.4
Q ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEec
Q 019145 155 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 155 ~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~ 192 (345)
++++|+|||++.++++..+.+..+.+. ...+|+++
T Consensus 81 ~~dvViIDEaqfl~~~~v~~l~~l~~~---~~~Vi~~G 115 (191)
T 1xx6_A 81 DTEVIAIDEVQFFDDEIVEIVNKIAES---GRRVICAG 115 (191)
T ss_dssp TCSEEEECSGGGSCTHHHHHHHHHHHT---TCEEEEEE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHhC---CCEEEEEe
Confidence 467999999999987777666555442 45677766
No 128
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.48 E-value=0.00019 Score=64.12 Aligned_cols=24 Identities=42% Similarity=0.473 Sum_probs=21.9
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|+||+|+||||+++.++...
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 357999999999999999999886
No 129
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.46 E-value=0.00012 Score=58.17 Aligned_cols=23 Identities=17% Similarity=0.348 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+|+||+||||+++.+++.+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 47999999999999999999997
No 130
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.44 E-value=0.00024 Score=58.39 Aligned_cols=99 Identities=13% Similarity=0.107 Sum_probs=49.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC--CccchHHHHHHHHHHHHhhhcCCCCC-CCCCCCCeEEEEE
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS--DDRGINVVRTKIKTFAAVAVGSGQRR-GGYPCPPYKIIIL 161 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ilii 161 (345)
.+++|+.|+||||.+-..++..... +..++-+... ...+ ..+.+.+.. ........... ......++++|+|
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~~~---g~kvli~kp~~D~Ryg-~~i~sr~G~-~~~a~~i~~~~di~~~~~~~dvViI 96 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQIA---QYKCLVIKYAKDTRYS-SSFCTHDRN-TMEALPACLLRDVAQEALGVAVIGI 96 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTT---TCCEEEEEETTCCCC-------------CEEEEESSGGGGHHHHTTCSEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC---CCeEEEEeecCCccch-HHHHhhcCC-eeEEEecCCHHHHHHHhccCCEEEE
Confidence 4899999999998776666665332 2233323221 1111 111111100 00000000000 0000024679999
Q ss_pred cCCCCCCHHHHHHHHHHHhhcCCceEEEEec
Q 019145 162 DEADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 162 DE~~~l~~~~~~~l~~~le~~~~~~~ii~~~ 192 (345)
||++.+.. ...+.+.+.+ ....+|+++
T Consensus 97 DEaQF~~~--v~el~~~l~~--~gi~VI~~G 123 (234)
T 2orv_A 97 DEGQFFPD--IVEFCEAMAN--AGKTVIVAA 123 (234)
T ss_dssp SSGGGCTT--HHHHHHHHHH--TTCEEEEEC
T ss_pred Echhhhhh--HHHHHHHHHh--CCCEEEEEe
Confidence 99999974 6667777776 445677776
No 131
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=97.43 E-value=0.0025 Score=52.22 Aligned_cols=42 Identities=19% Similarity=0.247 Sum_probs=26.1
Q ss_pred CCCeEEEEEcCCCCCC--HHHHHHHHHHHhhcCCceEEEEecCc
Q 019145 153 CPPYKIIILDEADSMT--EDAQNALRRTMETYSKVTRFFFICNY 194 (345)
Q Consensus 153 ~~~~~iliiDE~~~l~--~~~~~~l~~~le~~~~~~~ii~~~n~ 194 (345)
....+++|+||+|.+. ......+..++...+....+++.|..
T Consensus 156 ~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT 199 (220)
T 1t6n_A 156 LKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSAT 199 (220)
T ss_dssp CTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESC
T ss_pred cccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEee
Confidence 3456899999999873 34445555566555545555554433
No 132
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.37 E-value=0.00014 Score=58.95 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=22.9
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l 106 (345)
...++|+||+|+||||+++.+++.+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3468999999999999999999998
No 133
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.36 E-value=0.0013 Score=54.72 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=17.6
Q ss_pred CcEEEeCCCCCCHHHHHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~ 104 (345)
..+++.||+|+|||+++..+.-
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHh
Confidence 3689999999999987665543
No 134
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.36 E-value=0.00016 Score=57.01 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+|++|+||||+++.+++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999998
No 135
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.35 E-value=0.00015 Score=57.75 Aligned_cols=25 Identities=40% Similarity=0.681 Sum_probs=22.9
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l 106 (345)
...++|+|+||+||||+++.+++.+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999999988
No 136
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.34 E-value=0.00015 Score=57.00 Aligned_cols=25 Identities=28% Similarity=0.491 Sum_probs=22.6
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+++|+|++|+||||+++.+++.+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999999998
No 137
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.33 E-value=0.0026 Score=57.75 Aligned_cols=25 Identities=36% Similarity=0.470 Sum_probs=22.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~ 108 (345)
.++++|++|+||||++..++..+..
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHH
Confidence 3699999999999999999998743
No 138
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.31 E-value=0.00099 Score=50.64 Aligned_cols=122 Identities=9% Similarity=0.041 Sum_probs=76.5
Q ss_pred HHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCCCCCCCCCC
Q 019145 75 NTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQRRGGYPCP 154 (345)
Q Consensus 75 ~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (345)
..++.+-.+.++|+|+.-.-....+..+.+.+...++...+++.+++. .+ +...+...... +..+
T Consensus 11 ~~l~~~~~pvyll~G~E~~l~~~~~~~i~~~~~~~~~~e~~~~~~~~~--~~---~~~l~~~~~s~----------slF~ 75 (140)
T 1jql_B 11 AQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN--TD---WNAIFSLCQAM----------SLFA 75 (140)
T ss_dssp HHHHHCCCSEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEECCCCSTT--CC---HHHHHHHHHCC----------CTTC
T ss_pred HHHhccCCceEEEEcCcHHHHHHHHHHHHHHHHHCCCcceeEEEecCC--CC---HHHHHHHHhcC----------CCCC
Confidence 334444445579999998778888888877664333333334444441 23 33344433332 3446
Q ss_pred CeEEEEEcCCCC-CCHHHHHHHHHHHhhcCCceEEEEecCcc------cccchhhhccceeEEe
Q 019145 155 PYKIIILDEADS-MTEDAQNALRRTMETYSKVTRFFFICNYI------SRIIEPLASRCAKFRF 211 (345)
Q Consensus 155 ~~~iliiDE~~~-l~~~~~~~l~~~le~~~~~~~ii~~~n~~------~~l~~~l~~r~~~i~~ 211 (345)
++++|+|.+.+. +.++..+.|..+++.+++.+.+|++.... .++.+++.+.+..+.+
T Consensus 76 ~rrlV~v~~~~~~~~~~~~~~L~~yl~~p~~~~~lvi~~~kld~~~~~~k~~k~l~k~g~~v~~ 139 (140)
T 1jql_B 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTC 139 (140)
T ss_dssp CCEEEEEECCTTCSCTTHHHHHHHHHHHCCSSCCEEEECSSCCTTGGGSHHHHHHGGGCEEEEC
T ss_pred CCEEEEEECCCCCCChHHHHHHHHHHhcCCCCEEEEEEeCCcChhHHhhHHHHHHHhCeEEEEe
Confidence 788999998765 56677788999999888888888876322 3466666666555554
No 139
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.29 E-value=0.00017 Score=57.07 Aligned_cols=23 Identities=43% Similarity=0.668 Sum_probs=22.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
+++|.|+||+||||+++.+++.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999998
No 140
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.29 E-value=0.001 Score=60.42 Aligned_cols=23 Identities=39% Similarity=0.449 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
++++||+|+||||++..++..+.
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 69999999999999999998874
No 141
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.28 E-value=0.0002 Score=57.25 Aligned_cols=24 Identities=38% Similarity=0.704 Sum_probs=22.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
+.++|+|+||+||||+++.+++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999988
No 142
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=97.28 E-value=0.00053 Score=54.63 Aligned_cols=51 Identities=14% Similarity=0.169 Sum_probs=45.4
Q ss_pred CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 019145 278 GVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVL 328 (345)
Q Consensus 278 ~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~ 328 (345)
+..+++.++.++++++++|+++|+..|.+|++.|+||.+|.+.|...-..-
T Consensus 32 Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsED 82 (213)
T 3ctd_A 32 GQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACED 82 (213)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 557789999999999999999999999999999999999999998776644
No 143
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.26 E-value=0.00082 Score=61.10 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+|+||+||||+++.++..+
T Consensus 260 lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 37999999999999999999876
No 144
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.25 E-value=0.00018 Score=57.52 Aligned_cols=24 Identities=46% Similarity=0.625 Sum_probs=22.0
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHH
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~ 105 (345)
..+++|+|++|+||||+++.+++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 345899999999999999999998
No 145
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.25 E-value=0.0023 Score=56.68 Aligned_cols=24 Identities=42% Similarity=0.577 Sum_probs=21.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.++++||+|+||||++++++..+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhccc
Confidence 689999999999999999988773
No 146
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.20 E-value=0.00033 Score=55.26 Aligned_cols=24 Identities=38% Similarity=0.682 Sum_probs=22.1
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+.|+||+|+||||+++.++..+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999987
No 147
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.19 E-value=0.0003 Score=59.41 Aligned_cols=23 Identities=43% Similarity=0.697 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+||+|+||||+++.++..+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 36899999999999999999998
No 148
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.18 E-value=0.00028 Score=62.02 Aligned_cols=37 Identities=27% Similarity=0.526 Sum_probs=29.1
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 70 ~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
+..+...+..+..++++|+|++|+||||++++++..+
T Consensus 12 l~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 12 LQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3444444455666679999999999999999999987
No 149
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.16 E-value=0.00077 Score=71.62 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.4
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.+++++||||||||+++..++.+..
T Consensus 1082 ~~vll~G~~GtGKT~la~~~~~ea~ 1106 (2050)
T 3cmu_A 1082 RIVEIYGPESSGKTTLTLQVIAAAQ 1106 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999998873
No 150
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.15 E-value=0.0055 Score=52.91 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|.|+||+||||+++.+++.+
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37999999999999999999863
No 151
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=97.14 E-value=0.00086 Score=54.73 Aligned_cols=38 Identities=29% Similarity=0.397 Sum_probs=26.3
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.....+..++.. .++++.+|+|+|||.++...+...
T Consensus 35 ~~~Q~~~i~~~~~~---~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 35 RPYQMEVAQPALEG---KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CHHHHHHHHHHHTT---CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcC---CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 34444444444432 469999999999999888777654
No 152
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.14 E-value=0.00085 Score=57.75 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|+||||+||||+++.+++.+
T Consensus 36 ivl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6999999999999999999886
No 153
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.13 E-value=0.00027 Score=56.77 Aligned_cols=23 Identities=43% Similarity=0.595 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+|+||+||||+++.+++.+
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47999999999999999999987
No 154
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=97.12 E-value=0.0036 Score=50.67 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=15.8
Q ss_pred CcEEEeCCCCCCHHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTALA 101 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~ 101 (345)
.++++.+|+|+|||..+-.
T Consensus 41 ~~~lv~apTGsGKT~~~~~ 59 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYLI 59 (206)
T ss_dssp CCEEEECCSSSTTHHHHHH
T ss_pred CCEEEECCCCCchHHHHHH
Confidence 4699999999999976553
No 155
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.11 E-value=0.00037 Score=56.60 Aligned_cols=36 Identities=11% Similarity=0.164 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEec
Q 019145 154 PPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 154 ~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~ 192 (345)
.+..+|+|||++.|+++..+.+..+.+ .+..+|+.+
T Consensus 100 ~~~dvV~IDEaQFf~~~~v~~l~~la~---~gi~Vi~~G 135 (219)
T 3e2i_A 100 TNVDVIGIDEVQFFDDEIVSIVEKLSA---DGHRVIVAG 135 (219)
T ss_dssp TTCSEEEECCGGGSCTHHHHHHHHHHH---TTCEEEEEE
T ss_pred cCCCEEEEechhcCCHHHHHHHHHHHH---CCCEEEEee
Confidence 356799999999999888888877773 244556554
No 156
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=97.11 E-value=0.0025 Score=60.68 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=28.2
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
|...+..+...+..+. .++++++|+|+|||.++-.++..+.
T Consensus 183 Q~~ai~~~~~~~~~~~-~~~ll~~~TGsGKT~~~~~~~~~l~ 223 (590)
T 3h1t_A 183 QQIAINRAVQSVLQGK-KRSLITMATGTGKTVVAFQISWKLW 223 (590)
T ss_dssp HHHHHHHHHHHHHTTC-SEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CceEEEecCCCChHHHHHHHHHHHH
Confidence 3444444444444433 4689999999999999888877763
No 157
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.11 E-value=0.00097 Score=69.99 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++|||||||||++|++++.+.
T Consensus 1085 ~l~~G~~g~GKT~la~~~~~~~ 1106 (1706)
T 3cmw_A 1085 VEIYGPESSGKTTLTLQVIAAA 1106 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHh
Confidence 8999999999999999999876
No 158
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=97.11 E-value=0.0062 Score=52.66 Aligned_cols=50 Identities=16% Similarity=0.252 Sum_probs=30.9
Q ss_pred CCCCccccccHHHHHHHHH---------------HHHcCCCCcEEEeCCCCCCHHHHHH-HHHHHh
Q 019145 57 PKQVKDVAHQEEVVRVLTN---------------TLETANCPHMLFYGPPGTGKTTTAL-AIAHQL 106 (345)
Q Consensus 57 p~~~~~~~g~~~~~~~l~~---------------~l~~~~~~~lll~G~~G~GKT~la~-~la~~l 106 (345)
..+|+++-..+.++..+.. .+..+...++++.+|+|+|||...- .+...+
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l 156 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhh
Confidence 3567777555665544432 2233334679999999999997643 444444
No 159
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.10 E-value=0.0029 Score=55.92 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|+||||+|||+++..++..+
T Consensus 64 ~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 64 VEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6999999999999999999876
No 160
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.09 E-value=0.0017 Score=53.46 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=17.7
Q ss_pred CcEEEeCCCCCCHHHHH-HHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTA-LAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la-~~la~~l 106 (345)
.++++.+|+|+|||..+ -.+...+
T Consensus 52 ~~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 52 HDVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCEEEECCCCCcHHHHHHHHHHHHH
Confidence 46999999999999873 3444443
No 161
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.09 E-value=0.00039 Score=57.30 Aligned_cols=24 Identities=38% Similarity=0.721 Sum_probs=22.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|.|+||+||||+++.+++.+
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999999999988
No 162
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.09 E-value=0.00035 Score=55.06 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+|++|+||||+++.+++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999988
No 163
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.09 E-value=0.00042 Score=56.25 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=22.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|+|++|+||||+++.|+..+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999987
No 164
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.07 E-value=0.00039 Score=56.36 Aligned_cols=26 Identities=35% Similarity=0.537 Sum_probs=23.0
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 81 ~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
....+.|.||+|+||||+++.++..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 34458999999999999999999887
No 165
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.07 E-value=0.00038 Score=56.04 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=22.7
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l 106 (345)
...++|+|+||+||||+++.+++.+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3458999999999999999999988
No 166
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.07 E-value=0.001 Score=60.32 Aligned_cols=98 Identities=17% Similarity=0.198 Sum_probs=52.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCC---------CCCCCCCCC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ---------RRGGYPCPP 155 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 155 (345)
.++.|+||+|||+++..++.. .....+.+.. .....+++.+............ ........+
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~~--------~~~lVlTpT~-~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~~~~~~~~~~ 234 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVNF--------EEDLILVPGR-QAAEMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARCQ 234 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCCT--------TTCEEEESCH-HHHHHHHHHHTTTSCCCCCTTTEEEHHHHHHTTTSSCCCC
T ss_pred EEEEcCCCCCHHHHHHHHhcc--------CCeEEEeCCH-HHHHHHHHHhhhcCccccccceEEEeHHhhcCCCCCCCCc
Confidence 599999999999999877531 1222233322 2233333332210000000000 000001113
Q ss_pred eEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCcc
Q 019145 156 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYI 195 (345)
Q Consensus 156 ~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~ 195 (345)
.++|||||+.+++......++..+. ...+|++++..
T Consensus 235 ~d~liiDE~sm~~~~~l~~l~~~~~----~~~vilvGD~~ 270 (446)
T 3vkw_A 235 FKRLFIDEGLMLHTGCVNFLVEMSL----CDIAYVYGDTQ 270 (446)
T ss_dssp CSEEEEETGGGSCHHHHHHHHHHTT----CSEEEEEECTT
T ss_pred CCEEEEeCcccCCHHHHHHHHHhCC----CCEEEEecCcc
Confidence 6799999999999888877776542 26688887543
No 167
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.06 E-value=0.0005 Score=55.71 Aligned_cols=23 Identities=48% Similarity=0.917 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+|+||+||||+++.+++.+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999988
No 168
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.05 E-value=0.0065 Score=52.39 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.+.|.||+|+||||++..++..+.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 479999999999999999998874
No 169
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.02 E-value=0.00048 Score=53.95 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+|++|+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999988
No 170
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.02 E-value=0.0028 Score=51.83 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=23.2
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 81 NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 81 ~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
....++|.|++|+|||+++..+.....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSV 37 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 445699999999999999999988653
No 171
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.00 E-value=0.00052 Score=54.76 Aligned_cols=23 Identities=48% Similarity=0.907 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+|+||+||||+++.+++.+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999987
No 172
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.00 E-value=0.00098 Score=56.21 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|+|+||+||||+++.++..+
T Consensus 35 i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 35 ILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEESCGGGTTHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 7999999999999999999987
No 173
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.00 E-value=0.00043 Score=55.45 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+|+||+||||+++.+++.+
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47999999999999999999987
No 174
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.98 E-value=0.00049 Score=55.30 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+|+||+||||+++.+++.+
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999987
No 175
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=96.98 E-value=0.0032 Score=56.34 Aligned_cols=27 Identities=22% Similarity=0.165 Sum_probs=20.0
Q ss_pred cCCCCcEEEeCCCCCCHHHHHHHHHHH
Q 019145 79 TANCPHMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 79 ~~~~~~lll~G~~G~GKT~la~~la~~ 105 (345)
.+...++++.+|+|+|||..+-..+-.
T Consensus 41 ~~~~~~~lv~a~TGsGKT~~~~~~~~~ 67 (395)
T 3pey_A 41 HNPPRNMIAQSQSGTGKTAAFSLTMLT 67 (395)
T ss_dssp CSSCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 344467999999999999876554443
No 176
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.98 E-value=0.0006 Score=56.75 Aligned_cols=24 Identities=38% Similarity=0.699 Sum_probs=22.4
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|.|+||+||||+++.|++.+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999998
No 177
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.98 E-value=0.0004 Score=55.70 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=22.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.++|.|+||+||||+++.+++.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 479999999999999999999883
No 178
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.95 E-value=0.00068 Score=54.93 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=23.2
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 81 NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 81 ~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
....+.|.||+|+||||+++.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 334579999999999999999999873
No 179
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=96.95 E-value=0.0045 Score=52.93 Aligned_cols=39 Identities=10% Similarity=0.069 Sum_probs=28.4
Q ss_pred ccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+.....+..++.. .+.++.+|+|+|||.++..++...
T Consensus 114 l~~~Q~~ai~~~l~~---~~~ll~~~tGsGKT~~~~~~~~~~ 152 (282)
T 1rif_A 114 PHWYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYY 152 (282)
T ss_dssp CCHHHHHHHHHHHHH---SEEEECCCTTSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhc---CCeEEEcCCCCCcHHHHHHHHHHH
Confidence 345556666666655 347889999999999998777654
No 180
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.94 E-value=0.0012 Score=63.72 Aligned_cols=41 Identities=32% Similarity=0.417 Sum_probs=31.0
Q ss_pred ccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
-++...+++...+.... ..|+.||||||||+++-.+...+.
T Consensus 190 LN~~Q~~AV~~al~~~~--~~lI~GPPGTGKT~ti~~~I~~l~ 230 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQKE--LAIIHGPPGTGKTTTVVEIILQAV 230 (646)
T ss_dssp CCHHHHHHHHHHHHCSS--EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCC--ceEEECCCCCCHHHHHHHHHHHHH
Confidence 36777788888776432 469999999999987777666653
No 181
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.94 E-value=0.00053 Score=55.33 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=22.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|+|+||+||||+++.+++.+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999988
No 182
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.93 E-value=0.00048 Score=56.82 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=22.8
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l 106 (345)
...++|.|+||+||||+++.+++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3458999999999999999999998
No 183
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.93 E-value=0.0057 Score=54.38 Aligned_cols=22 Identities=55% Similarity=0.690 Sum_probs=20.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|+||||+|||+++..++..+
T Consensus 77 i~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 77 TEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHH
Confidence 7999999999999999998876
No 184
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.93 E-value=0.00069 Score=55.58 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=21.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|.||||+||+|.++.|++.+
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46889999999999999999998
No 185
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.91 E-value=0.0062 Score=53.91 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.++|+|+||+|||+++..++..+.
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 379999999999999999988763
No 186
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.91 E-value=0.00053 Score=56.78 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=22.1
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|+|+||+||||+++.+++.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 458999999999999999999987
No 187
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.91 E-value=0.00074 Score=55.00 Aligned_cols=22 Identities=45% Similarity=0.862 Sum_probs=21.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|.||||+||+|.++.|++.+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998
No 188
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.90 E-value=0.0051 Score=54.37 Aligned_cols=22 Identities=41% Similarity=0.644 Sum_probs=20.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|+||||+|||+++..++..+
T Consensus 64 v~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 64 IEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999999998765
No 189
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.90 E-value=0.0005 Score=54.70 Aligned_cols=24 Identities=42% Similarity=0.657 Sum_probs=18.0
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|+|+||+||||+++.+++.+
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 357999999999999999999987
No 190
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.90 E-value=0.00052 Score=55.03 Aligned_cols=23 Identities=43% Similarity=0.632 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|.||+|+||||+++.++...
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47999999999999999998763
No 191
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.89 E-value=0.0052 Score=49.67 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=17.8
Q ss_pred CcEEEeCCCCCCHHHHHHH-HHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALA-IAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~-la~~l 106 (345)
.++++.+|+|+|||..+-. +...+
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~l 63 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAERL 63 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCEEEECCCCChHHHHHHHHHHHHH
Confidence 4699999999999987444 44443
No 192
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.89 E-value=0.00058 Score=55.40 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=21.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+|++|+||||+++.+++.+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47999999999999999999987
No 193
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.86 E-value=0.0006 Score=54.65 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+|+||+||||+++.+++.+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999987
No 194
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.86 E-value=0.00061 Score=56.02 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=22.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|.|+||+||||+++.+++.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999998
No 195
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.85 E-value=0.00085 Score=52.95 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=21.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+||+|+||||+++.++..+
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHhh
Confidence 47999999999999999999886
No 196
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.85 E-value=0.00075 Score=54.87 Aligned_cols=24 Identities=29% Similarity=0.610 Sum_probs=21.8
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|+||+|+||||+++.++..+
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 348999999999999999999886
No 197
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.85 E-value=0.042 Score=46.58 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
++.|.||+|+||||+++.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999876
No 198
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=96.85 E-value=0.0015 Score=51.48 Aligned_cols=50 Identities=12% Similarity=-0.017 Sum_probs=44.9
Q ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 019145 279 VIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVL 328 (345)
Q Consensus 279 ~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~ 328 (345)
..+++.++.++++++++|+++|+..|.+|++.|+||..|.+.|...-..-
T Consensus 5 d~HYd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsED 54 (201)
T 3bge_A 5 DRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASED 54 (201)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 34578899999999999999999999999999999999999998776644
No 199
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.84 E-value=0.0008 Score=58.51 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+||+|+|||++++.+++.+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47999999999999999999997
No 200
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=96.80 E-value=0.0026 Score=52.95 Aligned_cols=21 Identities=29% Similarity=0.256 Sum_probs=16.5
Q ss_pred CcEEEeCCCCCCHHHHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTALAIA 103 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la 103 (345)
.++++.+|+|+|||..+-..+
T Consensus 68 ~~~li~apTGsGKT~~~~l~~ 88 (237)
T 3bor_A 68 YDVIAQAQSGTGKTATFAISI 88 (237)
T ss_dssp CCEEECCCSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHHHH
Confidence 469999999999997754433
No 201
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.80 E-value=0.014 Score=54.13 Aligned_cols=71 Identities=13% Similarity=0.172 Sum_probs=45.0
Q ss_pred CeEEEEEcCCCCCCH----HHHHHHHHHHhhcC-CceEEEEecCccc--ccchhhhccce-eEEecCCCHHHHHHHHHH
Q 019145 155 PYKIIILDEADSMTE----DAQNALRRTMETYS-KVTRFFFICNYIS--RIIEPLASRCA-KFRFKPLSEEVMSSRVLH 225 (345)
Q Consensus 155 ~~~iliiDE~~~l~~----~~~~~l~~~le~~~-~~~~ii~~~n~~~--~l~~~l~~r~~-~i~~~~~~~~~~~~~l~~ 225 (345)
++-+++|||+..+.. +..+.+.++..... ..+.+|+++..+. .+...+++.+. .+.|.-.+..+.+.++..
T Consensus 297 P~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ilg~ 375 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQ 375 (512)
T ss_dssp CEEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHSS
T ss_pred CcEEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHHhcCC
Confidence 445899999976532 22333444444333 2566777776655 46667777665 688888888888777643
No 202
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=96.79 E-value=0.0056 Score=54.14 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=19.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++.+|+|+|||..+-..+...
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 469999999999998876655554
No 203
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.78 E-value=0.001 Score=53.87 Aligned_cols=23 Identities=30% Similarity=0.644 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|.|++|+||||+++.+++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 37899999999999999999988
No 204
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.78 E-value=0.00079 Score=55.15 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+|+||+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999987
No 205
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.78 E-value=0.0008 Score=54.83 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=22.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.++|.|+||+||||+++.+++.+.
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 479999999999999999999883
No 206
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.76 E-value=0.0011 Score=55.59 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHc-CCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 68 EVVRVLTNTLET-ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 68 ~~~~~l~~~l~~-~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.+.-.+.. .....+.|+|++|+||||+++.++..+
T Consensus 33 ~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 33 QILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp HHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 444444433333 012369999999999999999999988
No 207
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.76 E-value=0.002 Score=52.23 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHcCCC---CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 67 EEVVRVLTNTLETANC---PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 67 ~~~~~~l~~~l~~~~~---~~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.+..+.+.+..... ..+.|+|++|+||||+++.++..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455666666654321 237899999999999999999876
No 208
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.75 E-value=0.00096 Score=53.30 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+||+|+||||+++.+....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999998875
No 209
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=96.73 E-value=0.0088 Score=53.86 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=17.4
Q ss_pred CCCCcEEEeCCCCCCHHHHHHH
Q 019145 80 ANCPHMLFYGPPGTGKTTTALA 101 (345)
Q Consensus 80 ~~~~~lll~G~~G~GKT~la~~ 101 (345)
+...++++.+|+|+|||..+-.
T Consensus 62 ~~~~~~lv~apTGsGKT~~~~~ 83 (412)
T 3fht_A 62 EPPQNLIAQSQSGTGKTAAFVL 83 (412)
T ss_dssp SSCCCEEEECCTTSCHHHHHHH
T ss_pred CCCCeEEEECCCCchHHHHHHH
Confidence 3345799999999999987543
No 210
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=96.73 E-value=0.0044 Score=51.97 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=15.3
Q ss_pred CcEEEeCCCCCCHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTAL 100 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~ 100 (345)
.++++.+|+|+|||..+-
T Consensus 81 ~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 81 RDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEcCCCCCchhHhH
Confidence 469999999999998644
No 211
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.73 E-value=0.0011 Score=52.82 Aligned_cols=23 Identities=13% Similarity=0.369 Sum_probs=21.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++...
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47999999999999999999875
No 212
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.71 E-value=0.0013 Score=54.33 Aligned_cols=23 Identities=30% Similarity=0.686 Sum_probs=21.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|.|+||+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999987
No 213
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.71 E-value=0.00073 Score=53.98 Aligned_cols=24 Identities=42% Similarity=0.544 Sum_probs=21.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.++|+|++|+||||+++.++..+.
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 479999999999999999999873
No 214
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=96.71 E-value=0.0099 Score=54.96 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=17.3
Q ss_pred CCCCcEEEeCCCCCCHHHHHHH
Q 019145 80 ANCPHMLFYGPPGTGKTTTALA 101 (345)
Q Consensus 80 ~~~~~lll~G~~G~GKT~la~~ 101 (345)
+...++++.||+|+|||...-.
T Consensus 129 ~~~~~~l~~a~TGsGKT~~~~l 150 (479)
T 3fmp_B 129 EPPQNLIAQSQSGTGKTAAFVL 150 (479)
T ss_dssp BSCCEEEEECCSSSSHHHHHHH
T ss_pred CCCCcEEEEcCCCCchhHHHHH
Confidence 3346799999999999987433
No 215
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.71 E-value=0.0016 Score=53.09 Aligned_cols=40 Identities=23% Similarity=0.359 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHcC--CCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 68 EVVRVLTNTLETA--NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 68 ~~~~~l~~~l~~~--~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
++++.+...+... ....+.|.||+|+||||+++.++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3445555554432 222378999999999999999999873
No 216
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.71 E-value=0.001 Score=54.25 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.6
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|+||+|+||||+++.++..+
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 347999999999999999999876
No 217
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.68 E-value=0.0014 Score=54.15 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|+||+|+||||+++.++..+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 218
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=96.66 E-value=0.016 Score=52.05 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=18.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++.+|+|+|||..+-..+-..
T Consensus 59 ~~~li~a~TGsGKT~~~~~~~~~~ 82 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIPTLEK 82 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHHHHH
Confidence 359999999999998765544443
No 219
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=96.65 E-value=0.004 Score=58.15 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=18.7
Q ss_pred CCcEEEeCCCCCCHHHHHHH-HHHHh
Q 019145 82 CPHMLFYGPPGTGKTTTALA-IAHQL 106 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~-la~~l 106 (345)
..++++.+|+|+|||..+-. +...+
T Consensus 158 ~~~~ll~apTGsGKT~~~~~~il~~l 183 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFALTMLSRV 183 (508)
T ss_dssp CCCEEEECCSSTTSHHHHHHHHHHHS
T ss_pred CCCEEEECCCCccHHHHHHHHHHHHH
Confidence 45799999999999987544 44443
No 220
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.64 E-value=0.013 Score=51.41 Aligned_cols=36 Identities=19% Similarity=0.409 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 69 VVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 69 ~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
+...+.-.+..+. .+++.||+|+||||++++++..+
T Consensus 160 ~l~~l~~~i~~g~--~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 160 AISAIKDGIAIGK--NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHHHHHHHHHTC--CEEEEESTTSCHHHHHHHGGGGS
T ss_pred HHhhhhhhccCCC--EEEEECCCCCCHHHHHHHHhCCC
Confidence 4555555565554 68999999999999999999876
No 221
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.64 E-value=0.0011 Score=53.93 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.++|+|++|+||||+++.+++.+.
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 479999999999999999999873
No 222
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=96.64 E-value=0.026 Score=46.88 Aligned_cols=24 Identities=38% Similarity=0.474 Sum_probs=17.5
Q ss_pred CcEEEeCCCCCCHHHHHH-HHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTAL-AIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~-~la~~l 106 (345)
.++++.+|+|+|||..+- .+...+
T Consensus 67 ~~~l~~a~TGsGKT~~~~l~~l~~l 91 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAFSIPILMQL 91 (245)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHHHHHHHH
Confidence 359999999999998643 333444
No 223
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=96.63 E-value=0.009 Score=49.18 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCCCHH-HHHHHHHHHhhcCCceEEEEec
Q 019145 153 CPPYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 153 ~~~~~iliiDE~~~l~~~-~~~~l~~~le~~~~~~~ii~~~ 192 (345)
....++|||||+|.+... ....+..++...+....+++.+
T Consensus 165 ~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~S 205 (228)
T 3iuy_A 165 LRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTS 205 (228)
T ss_dssp CTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEE
T ss_pred cccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEE
Confidence 345679999999976432 2333444454445455555544
No 224
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.63 E-value=0.043 Score=42.04 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=20.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||+++..+...-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 225
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.63 E-value=0.0012 Score=52.88 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+.|+|++|+||||+++.+++.+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999987
No 226
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.63 E-value=0.0012 Score=53.10 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+.|+|++|+||||+++.+++.+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 227
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.62 E-value=0.0013 Score=53.72 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=22.0
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|+|++|+||||+++.+++.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999999999999987
No 228
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=96.61 E-value=0.0056 Score=50.13 Aligned_cols=21 Identities=33% Similarity=0.282 Sum_probs=16.6
Q ss_pred CcEEEeCCCCCCHHHHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTALAIA 103 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la 103 (345)
.++++.+|+|+|||..+...+
T Consensus 42 ~~~lv~a~TGsGKT~~~~~~~ 62 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYLLPI 62 (219)
T ss_dssp CCEEEECCSSHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHH
Confidence 469999999999998754433
No 229
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.60 E-value=0.001 Score=58.03 Aligned_cols=23 Identities=26% Similarity=0.603 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|.||+|+|||+++..|++.+
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHC
Confidence 47999999999999999999987
No 230
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=96.60 E-value=0.015 Score=52.01 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=25.3
Q ss_pred CCCeEEEEEcCCCCCCH--HHHHHHHHHHhhcCCceEEEEec
Q 019145 153 CPPYKIIILDEADSMTE--DAQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 153 ~~~~~iliiDE~~~l~~--~~~~~l~~~le~~~~~~~ii~~~ 192 (345)
....++||+||+|.+.. .....+..++...+....+++.|
T Consensus 150 ~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 191 (391)
T 1xti_A 150 LKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFS 191 (391)
T ss_dssp CTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEE
T ss_pred ccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEE
Confidence 34667999999998753 44455555665555455555444
No 231
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.59 E-value=0.0037 Score=56.90 Aligned_cols=23 Identities=43% Similarity=0.613 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++|++|+||||++..++..+
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999987
No 232
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.59 E-value=0.0014 Score=53.12 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.9
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|+|++|+||||+++.+++.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 358999999999999999999986
No 233
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.59 E-value=0.0014 Score=54.89 Aligned_cols=24 Identities=38% Similarity=0.696 Sum_probs=22.1
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+.|.||+|+||||+++.+++.+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999999887
No 234
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.58 E-value=0.1 Score=43.53 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=19.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
.++|.|.+|+|||+++..+...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4899999999999999998764
No 235
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.58 E-value=0.0044 Score=50.80 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|.|.+|+|||+++..+...-
T Consensus 16 ivlvGd~~VGKTsLi~r~~~~~ 37 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMYDS 37 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCcCHHHHHHHHHhCC
Confidence 8999999999999999988654
No 236
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.58 E-value=0.0015 Score=53.57 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=35.2
Q ss_pred ccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 63 VAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 63 ~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
+..+.+....+.........+.++|.|++|+||||++..++..+
T Consensus 11 l~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 11 LAENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HhhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 33456666777777766666779999999999999999999886
No 237
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.57 E-value=0.0012 Score=53.49 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=20.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|+|++|+||||+++.++. +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 478999999999999999998 6
No 238
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.56 E-value=0.055 Score=42.27 Aligned_cols=18 Identities=33% Similarity=0.552 Sum_probs=16.4
Q ss_pred cEEEeCCCCCCHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALA 101 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~ 101 (345)
.+.|.||+|+||||+++.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999999995
No 239
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.55 E-value=0.0024 Score=52.16 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=23.0
Q ss_pred CCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 80 ANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 80 ~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
.....++|.|++|+||||+++.++..+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 333457999999999999999999987
No 240
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=96.55 E-value=0.0097 Score=49.13 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=17.6
Q ss_pred CcEEEeCCCCCCHHHHHH-HHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTAL-AIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~-~la~~l 106 (345)
.++++.+|+|+|||...- .+...+
T Consensus 62 ~~~l~~a~TGsGKT~~~~l~~l~~l 86 (230)
T 2oxc_A 62 LDLIVQAKSGTGKTCVFSTIALDSL 86 (230)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCEEEECCCCCcHHHHHHHHHHHHH
Confidence 469999999999997743 334443
No 241
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.54 E-value=0.0089 Score=58.67 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=22.6
Q ss_pred HHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHH
Q 019145 72 VLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 72 ~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~ 105 (345)
.+...+..+ .++++.||+|+|||+++..+...
T Consensus 101 ~i~~~l~~~--~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 101 EFLKLYQNN--QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp HHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHhCC--CeEEEECCCCCCHHHHHHHHHHH
Confidence 344444443 35899999999999977776544
No 242
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.53 E-value=0.023 Score=45.43 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
.+++.|++|+|||++++.+...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4999999999999999977664
No 243
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.53 E-value=0.0014 Score=52.45 Aligned_cols=23 Identities=43% Similarity=0.668 Sum_probs=20.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|.||+|+||||+++.++...
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 36899999999999999998754
No 244
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.53 E-value=0.0015 Score=52.89 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.5
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+.|+||+|+||||+++.++..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 347999999999999999998876
No 245
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=96.53 E-value=0.0037 Score=52.93 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=15.6
Q ss_pred CcEEEeCCCCCCHHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTALA 101 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~ 101 (345)
.++++.+|+|+|||..+..
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 3699999999999986543
No 246
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.52 E-value=0.0017 Score=52.15 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+.|+|++|+||||+++.++..+
T Consensus 15 IgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 6899999999999999999986
No 247
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.52 E-value=0.0021 Score=53.26 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.+++.+
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999999988
No 248
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.50 E-value=0.0019 Score=52.29 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=21.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++...
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 47899999999999999999875
No 249
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=96.50 E-value=0.0054 Score=48.48 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=45.0
Q ss_pred hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 019145 277 SGVIPPEVVEGLFAVCRSGDFDLANKEVNNIIAEGYPASLLLSQVTLLLFVL 328 (345)
Q Consensus 277 ~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~ 328 (345)
-+..+++.++.++++++++|+++|+..|.+|++.| ||..|.+.|...-..-
T Consensus 10 ~Gd~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsED 60 (204)
T 2r9g_A 10 NGDAHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYED 60 (204)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHT
T ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhh
Confidence 45678899999999999999999999999999999 9999999988776543
No 250
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=96.49 E-value=0.011 Score=53.30 Aligned_cols=40 Identities=20% Similarity=0.336 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCCCHH-HHHHHHHHHhhcCCceEEEEecC
Q 019145 154 PPYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICN 193 (345)
Q Consensus 154 ~~~~iliiDE~~~l~~~-~~~~l~~~le~~~~~~~ii~~~n 193 (345)
...++||+||+|.+... ....+..++...+....+++.|.
T Consensus 182 ~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 222 (414)
T 3eiq_A 182 KYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSA 222 (414)
T ss_dssp TTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECS
T ss_pred ccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEE
Confidence 34679999999986432 23445556665555666665553
No 251
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.49 E-value=0.0073 Score=63.55 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+||||+|||+++..++...
T Consensus 36 i~lI~G~pGsGKT~LAlqla~~~ 58 (1706)
T 3cmw_A 36 IVEIYGPESSGKTTLTLQVIAAA 58 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998775
No 252
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.48 E-value=0.0022 Score=51.67 Aligned_cols=24 Identities=21% Similarity=0.402 Sum_probs=21.5
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|.||+|+||||+++.|....
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECcCCCCHHHHHHHHHhhC
Confidence 347999999999999999999875
No 253
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.46 E-value=0.0019 Score=51.62 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=21.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++..+
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999999876
No 254
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.44 E-value=0.0021 Score=55.37 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=21.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+||+|+|||+++..+++.+
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCccCHHHHHHHHHHhC
Confidence 36899999999999999999997
No 255
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.42 E-value=0.0044 Score=56.11 Aligned_cols=49 Identities=20% Similarity=0.255 Sum_probs=34.0
Q ss_pred CCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 58 KQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 58 ~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.+++++--.......+...+. .....++|+||+|+||||+++++...+.
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l~~-~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRLIK-RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHHHT-SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCHHHcCCCHHHHHHHHHHHH-hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 355555444444455555543 3333479999999999999999999874
No 256
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.42 E-value=0.0088 Score=46.31 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999998764
No 257
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.39 E-value=0.0029 Score=51.29 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|+|++|+||||+++.++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 57899999999999999999988
No 258
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.39 E-value=0.0023 Score=51.73 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=21.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.+....
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999999876
No 259
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.38 E-value=0.0021 Score=55.42 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=21.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|.||+|+|||+++..+++.+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEECCCcCCHHHHHHHHHHhC
Confidence 46899999999999999999987
No 260
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.38 E-value=0.0019 Score=52.49 Aligned_cols=21 Identities=33% Similarity=0.319 Sum_probs=19.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~ 104 (345)
.+.|+||+|+||||+++.++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368999999999999999986
No 261
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.38 E-value=0.0049 Score=52.97 Aligned_cols=23 Identities=39% Similarity=0.823 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
+.|.||+|+||||+++.++..+.
T Consensus 34 i~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 68999999999999999998873
No 262
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.38 E-value=0.0092 Score=48.66 Aligned_cols=33 Identities=30% Similarity=0.394 Sum_probs=25.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASD 123 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 123 (345)
++|+||||+|||+++..++..- +..++.++...
T Consensus 23 ~~i~G~~GsGKTtl~~~l~~~~------~~~v~~i~~~~ 55 (220)
T 2cvh_A 23 TQVYGPYASGKTTLALQTGLLS------GKKVAYVDTEG 55 (220)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH------CSEEEEEESSC
T ss_pred EEEECCCCCCHHHHHHHHHHHc------CCcEEEEECCC
Confidence 7999999999999999998821 34555565544
No 263
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=96.37 E-value=0.017 Score=51.96 Aligned_cols=39 Identities=23% Similarity=0.369 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCCCH-HHHHHHHHHHhhcCCceEEEEec
Q 019145 154 PPYKIIILDEADSMTE-DAQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 154 ~~~~iliiDE~~~l~~-~~~~~l~~~le~~~~~~~ii~~~ 192 (345)
...++||+||+|.+.. .....+..++...+....+++.|
T Consensus 178 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~S 217 (410)
T 2j0s_A 178 RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLIS 217 (410)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEE
T ss_pred hheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEE
Confidence 4567999999997643 23345555555555555555544
No 264
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.36 E-value=0.00055 Score=55.61 Aligned_cols=42 Identities=12% Similarity=0.043 Sum_probs=21.6
Q ss_pred ccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
+++...+.+.+.......-.+++.|++|+|||+++..+....
T Consensus 13 ~~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 13 GLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -----------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 445555555555544444458999999999999999998654
No 265
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=96.36 E-value=0.029 Score=52.23 Aligned_cols=38 Identities=11% Similarity=0.080 Sum_probs=27.8
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.....+..++.. .+.+++||+|+|||..+-.++...
T Consensus 115 ~~~Q~~ai~~~~~~---~~~ll~~~tGsGKT~~~~~~~~~~ 152 (510)
T 2oca_A 115 HWYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYY 152 (510)
T ss_dssp CHHHHHHHHHHHHH---SEEEEECCSTTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHHHH
Confidence 45555555555554 469999999999999987776654
No 266
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.36 E-value=0.0023 Score=50.68 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=21.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|+|++|+||||+++.++..+
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999976
No 267
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=96.33 E-value=0.019 Score=52.94 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=29.0
Q ss_pred ccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
-.+.....+..++.. .++++.||+|+|||..+-.++...
T Consensus 94 l~~~Q~~ai~~i~~~---~~~ll~~~TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 94 LRDYQEKALERWLVD---KRGCIVLPTGSGKTHVAMAAINEL 132 (472)
T ss_dssp BCHHHHHHHHHHTTT---TEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhc---CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 345566666655544 259999999999999988887776
No 268
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.33 E-value=0.0026 Score=55.70 Aligned_cols=23 Identities=26% Similarity=0.624 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|.||+|+|||+++..++..+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 47999999999999999999997
No 269
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.33 E-value=0.0015 Score=53.34 Aligned_cols=43 Identities=37% Similarity=0.504 Sum_probs=29.8
Q ss_pred hhhCCCCCccccccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHH
Q 019145 53 EKYRPKQVKDVAHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 53 ~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~ 105 (345)
+..+|+++. +..++..+ ..+. .+.|.||.|+||||+++.++..
T Consensus 3 ~~i~pk~~g----~~~~l~~i----~~Ge--~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 3 AVIRPKTLG----QKHYVDAI----DTNT--IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp -CCCCCSHH----HHHHHHHH----HHCS--EEEEECCTTSSTTHHHHHHHHH
T ss_pred CccccCCHh----HHHHHHhc----cCCC--EEEEECCCCCCHHHHHHHHhcC
Confidence 346677763 34444443 3333 4789999999999999999876
No 270
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.32 E-value=0.0039 Score=51.26 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
+++....++..+.......+++.|.+|+|||+++..++....
T Consensus 22 ~~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 22 NKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 344556666666666666789999999999999999998863
No 271
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.31 E-value=0.0036 Score=52.64 Aligned_cols=24 Identities=42% Similarity=0.645 Sum_probs=22.1
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+.|.||+|+||||+++.+++.+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 358999999999999999999887
No 272
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=96.30 E-value=0.017 Score=47.96 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCCCHH-HHHHHHHHHhhcCCceEEEEec
Q 019145 153 CPPYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFIC 192 (345)
Q Consensus 153 ~~~~~iliiDE~~~l~~~-~~~~l~~~le~~~~~~~ii~~~ 192 (345)
....+++||||+|.+... ....+..++...+....+++.+
T Consensus 174 ~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~S 214 (242)
T 3fe2_A 174 LRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWS 214 (242)
T ss_dssp CTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEE
T ss_pred cccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEE
Confidence 345679999999986432 2334445555555555555544
No 273
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.29 E-value=0.017 Score=49.90 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=19.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++++||||+|||+++..++..+
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6999999999999988877765
No 274
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=96.28 E-value=0.034 Score=57.07 Aligned_cols=40 Identities=23% Similarity=0.289 Sum_probs=28.8
Q ss_pred cccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHH
Q 019145 64 AHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIA 103 (345)
Q Consensus 64 ~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la 103 (345)
..|...+..+...+..+.+.+++++||+|+|||.++-..+
T Consensus 606 ~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa 645 (1151)
T 2eyq_A 606 PDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAA 645 (1151)
T ss_dssp HHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHH
Confidence 3455666666665556766689999999999998765444
No 275
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=96.28 E-value=0.016 Score=47.96 Aligned_cols=18 Identities=33% Similarity=0.360 Sum_probs=15.3
Q ss_pred CcEEEeCCCCCCHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTAL 100 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~ 100 (345)
.++++.+|+|+|||..+-
T Consensus 63 ~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 63 KDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEeCCCCcHHHHHH
Confidence 469999999999998644
No 276
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=96.25 E-value=0.0096 Score=53.22 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCCCHH-HHHHHHHHHhhcCCceEEEEecC
Q 019145 154 PPYKIIILDEADSMTED-AQNALRRTMETYSKVTRFFFICN 193 (345)
Q Consensus 154 ~~~~iliiDE~~~l~~~-~~~~l~~~le~~~~~~~ii~~~n 193 (345)
.+.++||+||+|.+... ....+..++...+....+++.|.
T Consensus 161 ~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 201 (394)
T 1fuu_A 161 DKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSA 201 (394)
T ss_dssp TTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECS
T ss_pred hhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEE
Confidence 45689999999986432 22334444444445555555543
No 277
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.24 E-value=0.0088 Score=49.62 Aligned_cols=40 Identities=18% Similarity=0.147 Sum_probs=27.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcCCC---CCCCceeeeecCC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFGPE---LYKSRVLELNASD 123 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~~~---~~~~~~~~~~~~~ 123 (345)
.+.|+||+|+|||+++..++.....+. .....++.++...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 379999999999999999998642211 0134555565544
No 278
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.22 E-value=0.013 Score=45.70 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998654
No 279
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.22 E-value=0.054 Score=50.13 Aligned_cols=24 Identities=38% Similarity=0.492 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.+.|+|++|+||||++..++..+.
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999998773
No 280
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.18 E-value=0.014 Score=51.39 Aligned_cols=40 Identities=15% Similarity=0.192 Sum_probs=28.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC---CCCCceeeeecCCc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPE---LYKSRVLELNASDD 124 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~---~~~~~~~~~~~~~~ 124 (345)
++|+||||+|||+++..++.....+. ..+..++.++....
T Consensus 125 ~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 125 TEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp EEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 69999999999999999998753221 12345666666543
No 281
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.18 E-value=0.018 Score=44.36 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998754
No 282
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.17 E-value=0.043 Score=49.59 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=20.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+.|.|++|+||||+++.++...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 6999999999999999998764
No 283
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=95.16 E-value=0.00084 Score=54.37 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=23.5
Q ss_pred HHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHH
Q 019145 74 TNTLETANCPHMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 74 ~~~l~~~~~~~lll~G~~G~GKT~la~~la~~ 105 (345)
.+.+.....-.+++.|++|+|||+++..+...
T Consensus 22 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 22 ENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 33333344445899999999999999888754
No 284
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.14 E-value=0.025 Score=45.86 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+++.|++|+|||+++..+....
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458999999999999999998764
No 285
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.14 E-value=0.0099 Score=56.98 Aligned_cols=39 Identities=38% Similarity=0.565 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
++....++...+. .+..++.||||||||+++..++..+.
T Consensus 182 n~~Q~~av~~~l~---~~~~li~GppGTGKT~~~~~~i~~l~ 220 (624)
T 2gk6_A 182 NHSQVYAVKTVLQ---RPLSLIQGPPGTGKTVTSATIVYHLA 220 (624)
T ss_dssp CHHHHHHHHHHHT---CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc---CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 4666666666653 23579999999999999988887764
No 286
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.12 E-value=0.0056 Score=48.05 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=19.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
.+++.|++|+|||++++.+...
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999998654
No 287
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.12 E-value=0.0097 Score=45.95 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+....
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 48999999999999999998764
No 288
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.10 E-value=0.021 Score=45.13 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999998754
No 289
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.09 E-value=0.0037 Score=51.17 Aligned_cols=22 Identities=41% Similarity=0.489 Sum_probs=20.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|+|++|+||||+++.++. +
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-l 27 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-L 27 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-T
T ss_pred EEEEECCCCCCHHHHHHHHHH-c
Confidence 479999999999999999987 5
No 290
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.08 E-value=0.0043 Score=51.00 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++...
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 47999999999999999999876
No 291
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.08 E-value=0.015 Score=46.51 Aligned_cols=23 Identities=17% Similarity=0.436 Sum_probs=20.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||+++..+...-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998764
No 292
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.08 E-value=0.021 Score=44.47 Aligned_cols=23 Identities=17% Similarity=0.309 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998764
No 293
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.07 E-value=0.018 Score=45.79 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=20.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|.|++|+|||++++.+...-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 38999999999999999998765
No 294
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.07 E-value=0.0041 Score=51.04 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++...
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999999865
No 295
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.06 E-value=0.022 Score=43.96 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 38999999999999999998754
No 296
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.06 E-value=0.004 Score=51.59 Aligned_cols=24 Identities=42% Similarity=0.704 Sum_probs=21.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.++|.|++|+||||+++.++..+.
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 379999999999999999999983
No 297
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.06 E-value=0.0036 Score=52.61 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=21.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|+|++|+||||+++.|+..+
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999987
No 298
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.04 E-value=0.0045 Score=50.99 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+||+|+||||+++.++..+
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 47999999999999999999765
No 299
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.03 E-value=0.009 Score=47.60 Aligned_cols=22 Identities=36% Similarity=0.609 Sum_probs=19.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++.|++|+|||++++.+....
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 8999999999999998777654
No 300
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.03 E-value=0.0028 Score=50.80 Aligned_cols=23 Identities=35% Similarity=0.544 Sum_probs=21.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+||+|+|||+++..+++..
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 38999999999999999999875
No 301
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.02 E-value=0.018 Score=44.10 Aligned_cols=23 Identities=17% Similarity=0.463 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998764
No 302
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.01 E-value=0.0035 Score=50.52 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=20.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
.+.|+|++|+||||+++.+++.
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 4799999999999999999985
No 303
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.01 E-value=0.0068 Score=50.35 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=22.0
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+.|+|++|+||||+++.++..+
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 348999999999999999999987
No 304
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.01 E-value=0.03 Score=44.35 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.5
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~ 105 (345)
..+++.|++|+|||++++.+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999999765
No 305
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.00 E-value=0.0017 Score=51.60 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998764
No 306
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.00 E-value=0.0045 Score=47.99 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||.|+||||+++.++..+
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47999999999999999999987
No 307
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=95.99 E-value=0.024 Score=51.90 Aligned_cols=23 Identities=39% Similarity=0.444 Sum_probs=20.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
++++.+|+|+|||..+-.++...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~ 47 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYR 47 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 79999999999999888776654
No 308
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.99 E-value=0.0015 Score=53.23 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+.|.|++|+||||+++.+++.+
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 309
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.98 E-value=0.0047 Score=50.57 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|+|++|+||||+++.++..+
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 58999999999999999999987
No 310
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.98 E-value=0.0038 Score=50.80 Aligned_cols=23 Identities=39% Similarity=0.414 Sum_probs=21.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++..+
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999986
No 311
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.97 E-value=0.005 Score=50.04 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=21.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++..+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999999876
No 312
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.95 E-value=0.011 Score=50.92 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=20.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
+.++|++|+||||++..++..+.
T Consensus 101 i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 101 WFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 67889999999999999998873
No 313
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.95 E-value=0.0042 Score=53.21 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=19.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|+|++|+||||+++.++ .+
T Consensus 77 iI~I~G~~GSGKSTva~~La-~l 98 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK-NL 98 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HH
T ss_pred EEEEECCCCCCHHHHHHHHH-HC
Confidence 37999999999999999999 45
No 314
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.94 E-value=0.0058 Score=47.81 Aligned_cols=25 Identities=20% Similarity=0.033 Sum_probs=22.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
+.+.|.|++|+||||++..++..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4578999999999999999999873
No 315
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.94 E-value=0.03 Score=43.11 Aligned_cols=23 Identities=17% Similarity=0.411 Sum_probs=20.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999998753
No 316
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.94 E-value=0.0027 Score=51.90 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 38999999999999999998754
No 317
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.94 E-value=0.0034 Score=49.42 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=20.8
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
-.+++.|++|+|||++++.+...-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999998653
No 318
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.92 E-value=0.0095 Score=51.85 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=20.5
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+.|.||+|+||||+++.+...+
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999998887
No 319
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=95.92 E-value=0.015 Score=50.62 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=18.4
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~ 105 (345)
.++++.+|+|+|||..+-..+..
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~ 54 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILE 54 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEcCCCCcHHHHHHHHHHh
Confidence 36999999999999876655544
No 320
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.92 E-value=0.0029 Score=51.42 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=20.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+.|+|++|+||||+++.++..+
T Consensus 24 i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 6899999999999999998764
No 321
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.92 E-value=0.0061 Score=56.48 Aligned_cols=42 Identities=12% Similarity=0.201 Sum_probs=31.4
Q ss_pred cHHHHHHHHHHH--HcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 66 QEEVVRVLTNTL--ETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 66 ~~~~~~~l~~~l--~~~~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.+++.+.+++.. +......++|+|.+|+||||++++|++.+.
T Consensus 377 rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 377 YPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 456666666654 222334589999999999999999999994
No 322
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.91 E-value=0.013 Score=45.33 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||+++..+...-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999997653
No 323
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.89 E-value=0.023 Score=44.49 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=20.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999998754
No 324
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.89 E-value=0.0049 Score=51.43 Aligned_cols=21 Identities=43% Similarity=0.496 Sum_probs=19.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~ 104 (345)
.+.|.||+|+||||+++.++.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 479999999999999999984
No 325
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.89 E-value=0.08 Score=40.49 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998754
No 326
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.88 E-value=0.017 Score=50.53 Aligned_cols=39 Identities=18% Similarity=0.317 Sum_probs=27.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC---CCCCceeeeecCC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPE---LYKSRVLELNASD 123 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~---~~~~~~~~~~~~~ 123 (345)
++|+||||+|||+++..++..+..+. ..+..++.++...
T Consensus 110 ~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 110 TEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred EEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 79999999999999999998753221 1134556666554
No 327
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.88 E-value=0.0051 Score=52.00 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=21.6
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|+||+|+||||+++.++..+
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhC
Confidence 347999999999999999999876
No 328
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=95.85 E-value=0.015 Score=52.98 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=17.0
Q ss_pred CcEEEeCCCCCCHHHHH-HHHH
Q 019145 83 PHMLFYGPPGTGKTTTA-LAIA 103 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la-~~la 103 (345)
.++++.||+|+|||..+ -.+.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999875 4444
No 329
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.84 E-value=0.03 Score=44.92 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||+++..+...-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998654
No 330
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.82 E-value=0.027 Score=44.23 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 38999999999999999998754
No 331
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.82 E-value=0.029 Score=44.10 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 332
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.82 E-value=0.0059 Score=50.19 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 70 VRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 70 ~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
+..+...........+.|.|++|+||||+++.+++.+
T Consensus 9 ~~~~~~~~~~~~~~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 9 MGTLEAQTQGPGSMFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp ----------CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444444444444457999999999999999999987
No 333
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.82 E-value=0.017 Score=56.89 Aligned_cols=39 Identities=38% Similarity=0.582 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
++....++...+.. +..++.||||||||+++..++..+.
T Consensus 358 n~~Q~~Av~~~l~~---~~~lI~GppGTGKT~ti~~~i~~l~ 396 (800)
T 2wjy_A 358 NHSQVYAVKTVLQR---PLSLIQGPPGTGKTVTSATIVYHLA 396 (800)
T ss_dssp CHHHHHHHHHHHTS---SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhccC---CeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45566666665542 3579999999999999988888764
No 334
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.80 E-value=0.0073 Score=47.60 Aligned_cols=24 Identities=38% Similarity=0.440 Sum_probs=21.7
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
+.+.|.|++|+||||+++.+...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 457999999999999999999886
No 335
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.79 E-value=0.0094 Score=47.93 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=20.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|.|++|+|||++++.+...-
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 48999999999999999998764
No 336
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.79 E-value=0.007 Score=56.33 Aligned_cols=38 Identities=29% Similarity=0.268 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+...+...+..+. +++|+||+|+||||+++++...+
T Consensus 247 ~~~l~~l~~~v~~g~--~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 247 SGVLAYLWLAIEHKF--SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp HHHHHHHHHHHHTTC--CEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHhhC
Confidence 455566666666554 59999999999999999998876
No 337
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.79 E-value=0.018 Score=47.84 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|.|++|+|||++++.+...-
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 48999999999999999998654
No 338
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.78 E-value=0.02 Score=56.04 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=30.7
Q ss_pred ccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHH
Q 019145 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~ 104 (345)
.|..++..+...+..+...++++.||+|+|||..+-..+-
T Consensus 372 ~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il 411 (780)
T 1gm5_A 372 AQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAIL 411 (780)
T ss_dssp HHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHH
Confidence 4667777777777677667899999999999987755443
No 339
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.78 E-value=0.0027 Score=50.85 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 38999999999999999998764
No 340
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.78 E-value=0.066 Score=48.65 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=21.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~ 108 (345)
.++++|++|+||||++..++..+..
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~ 126 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLRE 126 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3688899999999999999988843
No 341
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.77 E-value=0.0024 Score=51.81 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998764
No 342
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.77 E-value=0.0045 Score=50.98 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+.|.||+|+||||+++.++..+
T Consensus 28 ~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 28 TEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999999999865
No 343
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.76 E-value=0.019 Score=45.69 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999998754
No 344
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.76 E-value=0.006 Score=54.54 Aligned_cols=23 Identities=22% Similarity=0.553 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|.||+|+|||+++..++..+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHHC
Confidence 36899999999999999999998
No 345
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.75 E-value=0.0072 Score=52.30 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.+.|.||+|+||||+++.++..+.
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 478999999999999999998874
No 346
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.74 E-value=0.036 Score=43.85 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998654
No 347
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.72 E-value=0.026 Score=44.46 Aligned_cols=23 Identities=17% Similarity=0.476 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998754
No 348
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.71 E-value=0.016 Score=52.96 Aligned_cols=35 Identities=26% Similarity=0.461 Sum_probs=26.0
Q ss_pred HHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 69 VVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 69 ~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
.+..+..+.+ ...++|+||+|+|||++++.++...
T Consensus 141 ~ID~L~pi~k---Gq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 141 VVDLLAPYIK---GGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHHSCEET---TCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHHHhhhcc---CCEEEEECCCCCCccHHHHHHHhhh
Confidence 4455544433 3358999999999999999998765
No 349
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.70 E-value=0.036 Score=44.97 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=19.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
.++|.|++|+|||++++.+...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3899999999999999998754
No 350
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.69 E-value=0.037 Score=48.12 Aligned_cols=35 Identities=26% Similarity=0.227 Sum_probs=26.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
++|.|+||+|||+++..++..+... +..++.++..
T Consensus 71 ~li~G~pG~GKTtl~l~ia~~~a~~---g~~vl~~slE 105 (315)
T 3bh0_A 71 VLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLE 105 (315)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTT---TCEEEEEESS
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEECC
Confidence 6999999999999999998776332 2345555544
No 351
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.69 E-value=0.016 Score=45.55 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=20.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+....
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999998654
No 352
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.66 E-value=0.0085 Score=51.71 Aligned_cols=24 Identities=38% Similarity=0.664 Sum_probs=21.8
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+.|+||+|+||||+++.|+..+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhhc
Confidence 347999999999999999999876
No 353
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=95.65 E-value=0.027 Score=54.89 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=17.9
Q ss_pred CCcEEEeCCCCCCHHHHHHHHH
Q 019145 82 CPHMLFYGPPGTGKTTTALAIA 103 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la 103 (345)
..+++++||+|+|||+.+-...
T Consensus 46 ~~~~lv~apTGsGKT~~~~l~i 67 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAEMGI 67 (715)
T ss_dssp TCCEEEECCTTSCHHHHHHHHH
T ss_pred CCcEEEEcCCCCcHHHHHHHHH
Confidence 3579999999999999884443
No 354
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.65 E-value=0.0045 Score=51.23 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=14.8
Q ss_pred cEEEeCCCCCCHHHHHHHHH-HHh
Q 019145 84 HMLFYGPPGTGKTTTALAIA-HQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la-~~l 106 (345)
.+.|+||+|+||||+++.++ ..+
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 47899999999999999999 654
No 355
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.62 E-value=0.14 Score=41.49 Aligned_cols=24 Identities=29% Similarity=0.511 Sum_probs=21.0
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHH
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~ 105 (345)
...+++.|++|+|||+++..+...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 345899999999999999998765
No 356
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.62 E-value=0.034 Score=44.21 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 38999999999999999998754
No 357
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.61 E-value=0.029 Score=44.95 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||+++..+...-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999997654
No 358
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.57 E-value=0.035 Score=44.67 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+....
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998764
No 359
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.57 E-value=0.02 Score=54.58 Aligned_cols=99 Identities=14% Similarity=0.097 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHhhhcCCC
Q 019145 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAVAVGSGQ 146 (345)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (345)
.+..+.+...+.... ...+|+|+.|.|||+++..++..+.. . +.+.++.......+.+..... .....
T Consensus 178 ~dQ~~al~~~~~~~~-~~~vlta~RGRGKSa~lG~~~a~~~~------~-~~vtAP~~~a~~~l~~~~~~~----i~~~~ 245 (671)
T 2zpa_A 178 PEQQQLLKQLMTMPP-GVAAVTAARGRGKSALAGQLISRIAG------R-AIVTAPAKASTDVLAQFAGEK----FRFIA 245 (671)
T ss_dssp HHHHHHHHHHTTCCS-EEEEEEECTTSSHHHHHHHHHHHSSS------C-EEEECSSCCSCHHHHHHHGGG----CCBCC
T ss_pred HHHHHHHHHHHHhhh-CeEEEecCCCCCHHHHHHHHHHHHHh------C-cEEECCCHHHHHHHHHHhhCC----eEEeC
Confidence 344444444444322 34799999999999999999998732 2 245565555555554432211 10000
Q ss_pred CCC-CCCCCCeEEEEEcCCCCCCHHHHHHHHH
Q 019145 147 RRG-GYPCPPYKIIILDEADSMTEDAQNALRR 177 (345)
Q Consensus 147 ~~~-~~~~~~~~iliiDE~~~l~~~~~~~l~~ 177 (345)
+.. .......++|||||+-.++......|+.
T Consensus 246 Pd~~~~~~~~~dlliVDEAAaIp~pll~~ll~ 277 (671)
T 2zpa_A 246 PDALLASDEQADWLVVDEAAAIPAPLLHQLVS 277 (671)
T ss_dssp HHHHHHSCCCCSEEEEETGGGSCHHHHHHHHT
T ss_pred chhhhhCcccCCEEEEEchhcCCHHHHHHHHh
Confidence 000 0012245799999999999877665554
No 360
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.56 E-value=0.019 Score=50.02 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=20.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|+||||+|||+++..++...
T Consensus 101 ~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 101 TEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6999999999999999999864
No 361
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.55 E-value=0.032 Score=44.79 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=20.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 38999999999999999997654
No 362
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.54 E-value=0.0084 Score=49.87 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+||||+|||+++..++..+
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37999999999999998887765
No 363
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=95.54 E-value=0.041 Score=55.62 Aligned_cols=52 Identities=15% Similarity=0.103 Sum_probs=29.2
Q ss_pred chhhhhhCCCCCccc--cccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHH
Q 019145 49 QPWVEKYRPKQVKDV--AHQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIA 103 (345)
Q Consensus 49 ~~~~~~~~p~~~~~~--~g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la 103 (345)
.||.+...|.....+ .-.+.....+..+. .+ .++++.+|+|+|||.++....
T Consensus 69 ~~~~~~~~p~~~~~~~f~L~~~Q~eai~~l~-~g--~~vLV~apTGSGKTlva~lai 122 (1010)
T 2xgj_A 69 TPIAEHKRVNEARTYPFTLDPFQDTAISCID-RG--ESVLVSAHTSAGKTVVAEYAI 122 (1010)
T ss_dssp CCGGGCCCSSCSCCCSSCCCHHHHHHHHHHH-HT--CEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCcccChhhHHhCCCCCCHHHHHHHHHHH-cC--CCEEEECCCCCChHHHHHHHH
Confidence 456555544332111 12334444444433 33 369999999999999875433
No 364
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.53 E-value=0.0083 Score=50.14 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=21.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+-|.||.|+||||+++.++..+
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999876
No 365
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.50 E-value=0.072 Score=42.06 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999998754
No 366
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.50 E-value=0.031 Score=44.45 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=18.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
+++.|++|+|||++++.+...
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999998754
No 367
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.48 E-value=0.016 Score=45.99 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=21.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+++.|++|+|||+++..+...-
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999998754
No 368
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.47 E-value=0.011 Score=47.90 Aligned_cols=24 Identities=17% Similarity=0.098 Sum_probs=22.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+.|.|++|+|||++++.+++.+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh
Confidence 357999999999999999999998
No 369
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.47 E-value=0.017 Score=51.23 Aligned_cols=27 Identities=33% Similarity=0.501 Sum_probs=23.0
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 81 NCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 81 ~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
....+.|+|+||+||||++..++..+.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 334589999999999999999998873
No 370
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.47 E-value=0.0093 Score=48.70 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~ 108 (345)
.++|.|++|+||||.++.+++.+..
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999998843
No 371
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.45 E-value=0.013 Score=48.23 Aligned_cols=22 Identities=36% Similarity=0.683 Sum_probs=21.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+-|.|+||+||||.++.+++.+
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred eeeECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988
No 372
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.44 E-value=0.55 Score=40.30 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.|.||+||||++..+...-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 48999999999999999998653
No 373
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.42 E-value=0.1 Score=45.65 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=26.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
++|.|+||+|||+++..++..+.. .+..+..++..
T Consensus 49 iiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlE 83 (338)
T 4a1f_A 49 VIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLE 83 (338)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESS
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCC
Confidence 699999999999999999887632 23445555443
No 374
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=95.40 E-value=0.024 Score=55.12 Aligned_cols=32 Identities=28% Similarity=0.281 Sum_probs=23.1
Q ss_pred ccHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHH
Q 019145 65 HQEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAI 102 (345)
Q Consensus 65 g~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~l 102 (345)
.|.+++..+. . ..++++.||+|+|||+.+...
T Consensus 29 ~Q~~~i~~i~----~--~~~~lv~apTGsGKT~~~~l~ 60 (702)
T 2p6r_A 29 PQAEAVEKVF----S--GKNLLLAMPTAAGKTLLAEMA 60 (702)
T ss_dssp CCHHHHHHHT----T--CSCEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHh----C--CCcEEEEcCCccHHHHHHHHH
Confidence 4666665532 2 347999999999999987443
No 375
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.38 E-value=0.01 Score=51.60 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
+.|.||+|+||||+++.++..+.
T Consensus 93 vgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 93 IGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHHhhcc
Confidence 68999999999999999998873
No 376
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.36 E-value=0.018 Score=46.78 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
.+++.|++|+|||+++..+...
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999754
No 377
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.36 E-value=0.0095 Score=45.69 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=20.9
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
+.+++.|++|+|||++++.+...-
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999998753
No 378
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.35 E-value=0.0091 Score=49.58 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=20.9
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+.|.||.|+||||+++.++..+
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 347999999999999999998655
No 379
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=95.33 E-value=0.052 Score=45.30 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=15.1
Q ss_pred CcEEEeCCCCCCHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTAL 100 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~ 100 (345)
.++++.+|+|+|||..+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 469999999999997544
No 380
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.31 E-value=0.0092 Score=50.92 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.++|+||+|+||||++..++..+.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 479999999999999999997653
No 381
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.30 E-value=0.0084 Score=49.44 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=18.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.++|.|++|+||||.++.+++.+.
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 479999999999999999999883
No 382
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.30 E-value=0.011 Score=51.07 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
+.|.||.|+||||+++.++..+.
T Consensus 103 i~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 103 IMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998873
No 383
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.30 E-value=0.016 Score=51.42 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=26.5
Q ss_pred HHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 71 RVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 71 ~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+.-.+..+. .++|+||+|+||||++++++...
T Consensus 166 ~~l~~~i~~G~--~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 166 SFLRRAVQLER--VIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HHHHHHHHTTC--CEEEEESSSSCHHHHHHHHHTTS
T ss_pred HHHHHHHhcCC--EEEEECCCCCCHHHHHHHHHhcC
Confidence 44444454444 68999999999999999998876
No 384
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.30 E-value=0.026 Score=50.71 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=26.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCC---CCCCceeeeecCC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPE---LYKSRVLELNASD 123 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~---~~~~~~~~~~~~~ 123 (345)
+.|+||||+|||++++.++-....+. .....++.++...
T Consensus 181 ~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 181 TELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 79999999999999998775442221 1234466666654
No 385
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.29 E-value=0.0096 Score=46.46 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
.++|.|++|+|||+++..+...
T Consensus 18 gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 4899999999999999999875
No 386
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.28 E-value=0.016 Score=57.00 Aligned_cols=38 Identities=37% Similarity=0.596 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 66 QEEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 66 ~~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
++....++...+. .+..++.||||||||+++..++..+
T Consensus 362 n~~Q~~Av~~~l~---~~~~lI~GppGTGKT~~i~~~i~~l 399 (802)
T 2xzl_A 362 NSSQSNAVSHVLQ---RPLSLIQGPPGTGKTVTSATIVYHL 399 (802)
T ss_dssp CHHHHHHHHHHTT---CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHHHHHHH
Confidence 4556666665543 2357999999999999887776554
No 387
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.27 E-value=0.01 Score=52.89 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=21.8
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|+||+|+||||++++++..+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 348999999999999999999876
No 388
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.27 E-value=0.012 Score=50.72 Aligned_cols=24 Identities=25% Similarity=0.160 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.++|.||||+||||+++.++..+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 379999999999999999998763
No 389
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.27 E-value=0.011 Score=51.08 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
++|+||+|+||||++..++..+.
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHHHHH
Confidence 68999999999999999998873
No 390
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.25 E-value=0.011 Score=47.45 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.|++|+||||+++.+....
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999998764
No 391
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.23 E-value=0.0095 Score=49.60 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.|++|+||||+++.+++.+
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 47899999999999999999987
No 392
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.23 E-value=0.036 Score=48.90 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.6
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+.|+||+|+|||++++.++...
T Consensus 134 ~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 134 TEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6999999999999999999876
No 393
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.23 E-value=0.012 Score=51.53 Aligned_cols=23 Identities=43% Similarity=0.587 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
+.|.||+|+||||+++.++..+.
T Consensus 132 i~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 132 IMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 69999999999999999998773
No 394
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=95.22 E-value=0.12 Score=48.41 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=19.0
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++.+|+|+|||..+-..+...
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~ 43 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHH 43 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHH
Confidence 469999999999998766655443
No 395
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.22 E-value=0.011 Score=49.33 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+.|.||.|+||||+++.++.-+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 457899999999999999998765
No 396
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.21 E-value=0.024 Score=45.49 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=4.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
.+++.|++|+|||+++..+...
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998766
No 397
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=95.21 E-value=0.18 Score=47.17 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=18.7
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++.+|+|+|||..+-..+...
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~ 46 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHH 46 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHHH
Confidence 369999999999998766555443
No 398
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.19 E-value=0.011 Score=49.18 Aligned_cols=42 Identities=10% Similarity=0.119 Sum_probs=28.1
Q ss_pred CeEEEEEcCCC-CCCHHHHHHHHHHHh---hcCCceEEEEecCccc
Q 019145 155 PYKIIILDEAD-SMTEDAQNALRRTME---TYSKVTRFFFICNYIS 196 (345)
Q Consensus 155 ~~~iliiDE~~-~l~~~~~~~l~~~le---~~~~~~~ii~~~n~~~ 196 (345)
+++++++||.- .+.......+.+.+. .......+|+++....
T Consensus 145 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~ 190 (237)
T 2cbz_A 145 NADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMS 190 (237)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCST
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChH
Confidence 45799999964 578888888888773 2223445666665443
No 399
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.19 E-value=0.019 Score=49.83 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=21.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++..+
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999876
No 400
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.18 E-value=0.0086 Score=49.88 Aligned_cols=21 Identities=43% Similarity=0.524 Sum_probs=18.7
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
++++|+||+|||+++..++..
T Consensus 33 ~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 33 VLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 799999999999999887654
No 401
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.17 E-value=0.011 Score=47.27 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=20.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+.|.|++|+||||+++.+....
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7999999999999999998765
No 402
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=95.16 E-value=0.056 Score=55.20 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=18.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~ 105 (345)
.+++++||+|+|||..+...+..
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i~~ 222 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAIAQ 222 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCChHHHHHHHHHH
Confidence 46999999999999876554443
No 403
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.16 E-value=0.0097 Score=49.02 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=20.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||.|+||||+++.++...
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998754
No 404
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.14 E-value=0.012 Score=46.52 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=21.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
..+|+||.|+|||+++.++.-.+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 35999999999999999999877
No 405
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.13 E-value=0.0096 Score=55.87 Aligned_cols=41 Identities=32% Similarity=0.408 Sum_probs=28.8
Q ss_pred HHHHHHHHHHH--HcCCCCcEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 67 EEVVRVLTNTL--ETANCPHMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 67 ~~~~~~l~~~l--~~~~~~~lll~G~~G~GKT~la~~la~~l~ 107 (345)
..+...++... .......+.|+|++|+||||++++|+..+.
T Consensus 352 peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 352 PEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp HHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 44445554433 122333579999999999999999999984
No 406
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.09 E-value=0.16 Score=46.35 Aligned_cols=36 Identities=28% Similarity=0.194 Sum_probs=26.4
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
++|.|+||+|||+++..++....... +.+++.++..
T Consensus 203 ~ii~G~pg~GKT~lal~ia~~~a~~~--g~~vl~~slE 238 (444)
T 2q6t_A 203 NIIAARPAMGKTAFALTIAQNAALKE--GVGVGIYSLE 238 (444)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTT--CCCEEEEESS
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEECC
Confidence 69999999999999999988763221 3345555554
No 407
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.09 E-value=0.0079 Score=51.70 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=18.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|+||+|+||||+++.+++.+
T Consensus 7 iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999876
No 408
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.08 E-value=0.013 Score=45.47 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
.+.|.|++|+|||++++.+...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999764
No 409
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.08 E-value=0.012 Score=47.98 Aligned_cols=23 Identities=43% Similarity=0.560 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||.|+||||+++.++..+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998765
No 410
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.07 E-value=0.012 Score=49.64 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||.|+||||+++.++.-+
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998765
No 411
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.04 E-value=0.011 Score=46.79 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=19.2
Q ss_pred cEEEeCCCCCCHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~ 104 (345)
.++|.|++|+|||++++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 389999999999999999976
No 412
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=95.02 E-value=0.09 Score=50.30 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=19.9
Q ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHhh
Q 019145 154 PPYKIIILDEADSMTEDAQNALRRTMET 181 (345)
Q Consensus 154 ~~~~iliiDE~~~l~~~~~~~l~~~le~ 181 (345)
.+.++|||||++.++......+..+++.
T Consensus 317 ~~l~~lVlDEAH~l~~~~~~~l~~Il~~ 344 (666)
T 3o8b_A 317 GAYDIIICDECHSTDSTTILGIGTVLDQ 344 (666)
T ss_dssp TSCSEEEETTTTCCSHHHHHHHHHHHHH
T ss_pred CcccEEEEccchhcCccHHHHHHHHHHh
Confidence 4578999999999987665545444443
No 413
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.02 E-value=0.014 Score=48.49 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.++|.|++|+||||.++.++..+.
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 479999999999999999999884
No 414
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.01 E-value=0.02 Score=53.76 Aligned_cols=41 Identities=29% Similarity=0.368 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHH--HcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 66 QEEVVRVLTNTL--ETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 66 ~~~~~~~l~~~l--~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++...++... +......++|+|++|+||||+++.+++.+
T Consensus 354 r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 354 RPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred chhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHh
Confidence 355555665555 22223347999999999999999999987
No 415
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.99 E-value=0.016 Score=49.04 Aligned_cols=41 Identities=22% Similarity=0.400 Sum_probs=29.1
Q ss_pred CeEEEEEcCCC-CCCHHHHHHHHHHHhhcCC-ceEEEEecCcc
Q 019145 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSK-VTRFFFICNYI 195 (345)
Q Consensus 155 ~~~iliiDE~~-~l~~~~~~~l~~~le~~~~-~~~ii~~~n~~ 195 (345)
+++++++||.- .++......+.+++.+... ...+|+++...
T Consensus 182 ~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~ 224 (267)
T 2zu0_C 182 EPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQ 224 (267)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSG
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCH
Confidence 46799999965 5788888888888876532 34566666443
No 416
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=94.98 E-value=0.03 Score=54.62 Aligned_cols=18 Identities=33% Similarity=0.338 Sum_probs=16.0
Q ss_pred CcEEEeCCCCCCHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTAL 100 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~ 100 (345)
.+++++||+|+|||..+.
T Consensus 40 ~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 40 KNALISIPTASGKTLIAE 57 (720)
T ss_dssp CEEEEECCGGGCHHHHHH
T ss_pred CcEEEEcCCccHHHHHHH
Confidence 579999999999998873
No 417
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.97 E-value=0.014 Score=51.58 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++.-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999998765
No 418
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.96 E-value=0.018 Score=47.03 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=22.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..++|.|++|+||||.++.+++.+
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 347999999999999999999998
No 419
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.95 E-value=0.015 Score=54.91 Aligned_cols=23 Identities=26% Similarity=0.353 Sum_probs=21.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+|++|+||||+++.+++.+
T Consensus 398 ~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 398 TIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEeecCCCCCHHHHHHHHHHHh
Confidence 37999999999999999999997
No 420
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.95 E-value=0.024 Score=44.79 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=22.5
Q ss_pred HcCCCCcEEEeCCCCCCHHHHHHHHHHH
Q 019145 78 ETANCPHMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 78 ~~~~~~~lll~G~~G~GKT~la~~la~~ 105 (345)
.......+++.|++|+|||++++.+...
T Consensus 12 ~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 12 FNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 3344446899999999999999999853
No 421
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.92 E-value=0.016 Score=48.52 Aligned_cols=41 Identities=22% Similarity=0.282 Sum_probs=28.0
Q ss_pred CeEEEEEcCCC-CCCHHHHHHHHHHHhhcC-CceEEEEecCcc
Q 019145 155 PYKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYI 195 (345)
Q Consensus 155 ~~~iliiDE~~-~l~~~~~~~l~~~le~~~-~~~~ii~~~n~~ 195 (345)
+++++++||.- .++......+.+++.+.. ....+|+++...
T Consensus 161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 203 (250)
T 2d2e_A 161 EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQ 203 (250)
T ss_dssp CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSS
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 46799999954 577787788887777653 244566666443
No 422
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.92 E-value=0.02 Score=44.71 Aligned_cols=25 Identities=36% Similarity=0.339 Sum_probs=21.3
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~l 106 (345)
...+++.|++|+|||++++.+...-
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3458999999999999999997643
No 423
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.91 E-value=0.015 Score=49.17 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.0
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+.|.||.|+||||+++.++..+
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 347899999999999999998765
No 424
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.90 E-value=0.016 Score=51.21 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=21.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
+.|.||.|+||||+++.++..+.
T Consensus 160 i~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 160 IMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHhhcc
Confidence 68999999999999999999873
No 425
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.88 E-value=0.017 Score=51.34 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=20.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++.-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999998765
No 426
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.88 E-value=0.016 Score=47.24 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~~ 108 (345)
.+.|.|++|+||||.++.+++.+..
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999998843
No 427
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.87 E-value=0.0062 Score=51.50 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=21.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|.|++|+||||+++.|++.+
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 47999999999999999999886
No 428
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.87 E-value=0.14 Score=43.41 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=18.0
Q ss_pred cEEEeCCCCCCHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIA 103 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la 103 (345)
++++.|++|+||||++..+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999999999864
No 429
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.87 E-value=0.016 Score=45.07 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=19.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
.+++.|++|+|||++++.+...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 4899999999999999998754
No 430
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.86 E-value=0.014 Score=49.12 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||.|+||||+++.++..+
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998765
No 431
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.85 E-value=0.018 Score=50.98 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++.-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999998765
No 432
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.85 E-value=0.013 Score=49.92 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||.|+||||+++.++..+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998755
No 433
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.84 E-value=0.0075 Score=47.38 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.+.|.|++|+||||+++.++..+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 478999999999999999999873
No 434
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.83 E-value=0.015 Score=48.00 Aligned_cols=41 Identities=5% Similarity=0.044 Sum_probs=27.4
Q ss_pred CeEEEEEcCCC-CCCHHHHHHHHHH-HhhcCCceEEEEecCcc
Q 019145 155 PYKIIILDEAD-SMTEDAQNALRRT-METYSKVTRFFFICNYI 195 (345)
Q Consensus 155 ~~~iliiDE~~-~l~~~~~~~l~~~-le~~~~~~~ii~~~n~~ 195 (345)
+++++++||.- .+.......+.+. +........+|+++...
T Consensus 148 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~ 190 (229)
T 2pze_A 148 DADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKM 190 (229)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCH
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCCh
Confidence 56799999954 5788888888875 44433344566666543
No 435
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=94.82 E-value=0.067 Score=49.12 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=17.3
Q ss_pred CcEEEeCCCCCCHHHH-HHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTT-ALAIAHQ 105 (345)
Q Consensus 83 ~~lll~G~~G~GKT~l-a~~la~~ 105 (345)
.++++.||+|+|||+. +-.+...
T Consensus 22 ~~vlv~a~TGsGKT~~~~l~il~~ 45 (459)
T 2z83_A 22 QMTVLDLHPGSGKTRKILPQIIKD 45 (459)
T ss_dssp CEEEECCCTTSCTTTTHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999986 3444443
No 436
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.82 E-value=0.016 Score=48.73 Aligned_cols=24 Identities=38% Similarity=0.492 Sum_probs=21.0
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+.|.||.|+||||+++.++..+
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 347899999999999999998765
No 437
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.82 E-value=0.015 Score=48.42 Aligned_cols=23 Identities=43% Similarity=0.497 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||.|+||||+++.++..+
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998765
No 438
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.82 E-value=0.018 Score=50.88 Aligned_cols=23 Identities=43% Similarity=0.642 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++.-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 47899999999999999998765
No 439
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.82 E-value=0.013 Score=48.87 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||.|+||||+++.++..+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998765
No 440
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.81 E-value=0.015 Score=48.63 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||.|+||||+++.++..+
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998765
No 441
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.80 E-value=0.017 Score=53.94 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=21.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++++|.||+||||+++.+++.+
T Consensus 37 lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 37 VIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37999999999999999999987
No 442
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.80 E-value=0.016 Score=49.22 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=29.4
Q ss_pred CCeEEEEEcCCC-CCCHHHHHHHHHHHhhcCC--ceEEEEecCcc
Q 019145 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYSK--VTRFFFICNYI 195 (345)
Q Consensus 154 ~~~~iliiDE~~-~l~~~~~~~l~~~le~~~~--~~~ii~~~n~~ 195 (345)
.+++++++||.- .|.......+.+++.+... ...+|+++...
T Consensus 173 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~ 217 (271)
T 2ixe_A 173 RKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQL 217 (271)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH
Confidence 356799999964 5788888888888876532 44566666543
No 443
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.79 E-value=0.021 Score=46.88 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.|++|+|||++++.+++.+
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHc
Confidence 37899999999999999999998
No 444
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.79 E-value=0.015 Score=51.26 Aligned_cols=23 Identities=39% Similarity=0.447 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++.-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998765
No 445
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.79 E-value=0.01 Score=52.35 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 47999999999999999998654
No 446
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.79 E-value=0.016 Score=48.87 Aligned_cols=42 Identities=26% Similarity=0.429 Sum_probs=28.2
Q ss_pred CeEEEEEcCCC-CCCHHHHHHHHHHHhhcCCceEEEEecCccc
Q 019145 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (345)
Q Consensus 155 ~~~iliiDE~~-~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~ 196 (345)
+++++++||.- .+.......+.+.+.+......+|+++....
T Consensus 173 ~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~ 215 (260)
T 2ghi_A 173 DPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLS 215 (260)
T ss_dssp CCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGG
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHH
Confidence 45799999964 5777777777777765544445666665443
No 447
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.79 E-value=0.016 Score=48.57 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||.|+||||+++.++..+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998765
No 448
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.77 E-value=0.019 Score=44.36 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999998754
No 449
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.76 E-value=0.02 Score=50.95 Aligned_cols=23 Identities=43% Similarity=0.595 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++.-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 47899999999999999998765
No 450
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=94.75 E-value=0.096 Score=49.99 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=17.1
Q ss_pred CcEEEeCCCCCCHHHH-HHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTT-ALAIAHQ 105 (345)
Q Consensus 83 ~~lll~G~~G~GKT~l-a~~la~~ 105 (345)
.++++.+|+|+|||+. +-.+...
T Consensus 187 ~dvlv~a~TGSGKT~~~~lpil~~ 210 (618)
T 2whx_A 187 RLTIMDLHPGAGKTKRILPSIVRE 210 (618)
T ss_dssp CEEEECCCTTSSTTTTHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 4699999999999986 3334433
No 451
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.74 E-value=0.044 Score=49.39 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||++++++...
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57999999999999999998743
No 452
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.74 E-value=0.017 Score=48.96 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||.|+||||+++.++..+
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998755
No 453
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.70 E-value=0.041 Score=48.53 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=21.3
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l 106 (345)
..+.|.|+||+||||+.+.+...+
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 347999999999999999999865
No 454
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.69 E-value=0.02 Score=44.78 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998754
No 455
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.67 E-value=0.018 Score=48.77 Aligned_cols=42 Identities=24% Similarity=0.344 Sum_probs=27.7
Q ss_pred CCeEEEEEcCCC-CCCHHHHHHHHHHHhhcC-CceEEEEecCcc
Q 019145 154 PPYKIIILDEAD-SMTEDAQNALRRTMETYS-KVTRFFFICNYI 195 (345)
Q Consensus 154 ~~~~iliiDE~~-~l~~~~~~~l~~~le~~~-~~~~ii~~~n~~ 195 (345)
.+++++++||.- .++......+.+++.+.. ....+|+++...
T Consensus 155 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~ 198 (266)
T 2yz2_A 155 HEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 198 (266)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 356799999964 577777777777776542 234456666443
No 456
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.67 E-value=0.02 Score=44.01 Aligned_cols=23 Identities=17% Similarity=0.496 Sum_probs=20.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998753
No 457
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.64 E-value=0.018 Score=49.15 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||.|+||||+++.++..+
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998765
No 458
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.63 E-value=0.02 Score=44.30 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=18.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~ 104 (345)
.+++.|++|+|||++++.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999999863
No 459
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.63 E-value=0.018 Score=44.46 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||+++..+...-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998653
No 460
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.60 E-value=0.018 Score=51.21 Aligned_cols=23 Identities=48% Similarity=0.631 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++.-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999998765
No 461
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.60 E-value=0.02 Score=45.24 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=19.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
.++|.|++|+|||++++.+...
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999863
No 462
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.59 E-value=0.021 Score=44.18 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=19.8
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
.+++.|++|+|||++++.+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 463
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.56 E-value=0.022 Score=52.34 Aligned_cols=23 Identities=43% Similarity=0.520 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
+.|.|++|+||||+++.|+..+.
T Consensus 296 I~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 296 ILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCcccHHHHHHHHHHHhh
Confidence 68999999999999999998773
No 464
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.55 E-value=0.019 Score=48.20 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||.|+||||+++.++..+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998765
No 465
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.54 E-value=0.021 Score=45.46 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=21.0
Q ss_pred CCcEEEeCCCCCCHHHHHHHHHHH
Q 019145 82 CPHMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 82 ~~~lll~G~~G~GKT~la~~la~~ 105 (345)
...+++.|++|+|||+++..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456999999999999999999754
No 466
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=94.52 E-value=0.22 Score=46.01 Aligned_cols=110 Identities=14% Similarity=0.134 Sum_probs=57.1
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecCCccchHHHHHHHHHHHHh-hh---cCCCCCCC--------
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKTFAAV-AV---GSGQRRGG-------- 150 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~-------- 150 (345)
.+.+|.-+.|+|||..+-+++..+..... ...++-+.+. .-...+.+.+..+... .. ........
T Consensus 57 ~~~ilad~~GlGKT~~ai~~i~~~~~~~~-~~~~LIv~P~--~l~~qw~~e~~~~~~~~~v~~~~g~~~~~~~~~~~ivi 133 (500)
T 1z63_A 57 FGICLADDMGLGKTLQTIAVFSDAKKENE-LTPSLVICPL--SVLKNWEEELSKFAPHLRFAVFHEDRSKIKLEDYDIIL 133 (500)
T ss_dssp CCEEECCCTTSCHHHHHHHHHHHHHHTTC-CSSEEEEECS--TTHHHHHHHHHHHCTTSCEEECSSSTTSCCGGGSSEEE
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHHHhcCC-CCCEEEEccH--HHHHHHHHHHHHHCCCceEEEEecCchhccccCCcEEE
Confidence 36899999999999988888777632211 2234434332 2334444444443211 00 00000000
Q ss_pred -----------CCCCCeEEEEEcCCCCCCHHHHHHHHHHHhhcCCceEEEEecCccc
Q 019145 151 -----------YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (345)
Q Consensus 151 -----------~~~~~~~iliiDE~~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~ 196 (345)
......++||+||+|.+.... ....+.+.......++.+++++..
T Consensus 134 ~t~~~l~~~~~l~~~~~~~vIvDEaH~~kn~~-~~~~~~l~~l~~~~~l~LTaTP~~ 189 (500)
T 1z63_A 134 TTYAVLLRDTRLKEVEWKYIVIDEAQNIKNPQ-TKIFKAVKELKSKYRIALTGTPIE 189 (500)
T ss_dssp EEHHHHTTCHHHHTCCEEEEEEETGGGGSCTT-SHHHHHHHTSCEEEEEEECSSCST
T ss_pred eeHHHHhccchhcCCCcCEEEEeCccccCCHh-HHHHHHHHhhccCcEEEEecCCCC
Confidence 012356899999999984321 123333433444556777775543
No 467
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.51 E-value=0.018 Score=44.41 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=18.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~ 104 (345)
.+++.|++|+|||++++.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999998853
No 468
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=94.50 E-value=0.058 Score=49.23 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=17.5
Q ss_pred CcEEEeCCCCCCHHHHH-HHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTA-LAIAHQ 105 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la-~~la~~ 105 (345)
.++++.||+|+|||..+ -.+...
T Consensus 9 ~~vlv~a~TGSGKT~~~l~~~l~~ 32 (440)
T 1yks_A 9 MTTVLDFHPGAGKTRRFLPQILAE 32 (440)
T ss_dssp CEEEECCCTTSSTTTTHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 46999999999999874 444443
No 469
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.49 E-value=0.1 Score=47.68 Aligned_cols=35 Identities=26% Similarity=0.227 Sum_probs=26.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCCCCCCceeeeecC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNAS 122 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 122 (345)
+++.|+||+|||+++..++..+... +..+..++..
T Consensus 200 iiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlE 234 (444)
T 3bgw_A 200 VLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLE 234 (444)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSS
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECC
Confidence 6999999999999999998876432 3345555443
No 470
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.47 E-value=0.027 Score=45.63 Aligned_cols=22 Identities=45% Similarity=0.768 Sum_probs=20.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+.|.|+.|+||||.++.+++.+
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6889999999999999999998
No 471
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.47 E-value=0.018 Score=51.21 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=21.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++..+
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37999999999999999999986
No 472
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=94.46 E-value=0.026 Score=43.12 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~ 108 (345)
.+|+||.|+|||+++.++.-.+.+
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 599999999999999999877633
No 473
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.44 E-value=0.024 Score=45.00 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 38999999999999999998754
No 474
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.44 E-value=0.021 Score=44.51 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.1
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 38999999999999999998643
No 475
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.44 E-value=0.016 Score=51.01 Aligned_cols=23 Identities=35% Similarity=0.404 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++.++.-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 47899999999999999998765
No 476
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=94.44 E-value=0.36 Score=45.35 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=15.9
Q ss_pred CCCcEEEeCCCCCCHHHHHH
Q 019145 81 NCPHMLFYGPPGTGKTTTAL 100 (345)
Q Consensus 81 ~~~~lll~G~~G~GKT~la~ 100 (345)
...++++.+|+|+|||....
T Consensus 110 ~~~~~lv~apTGsGKTl~~~ 129 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKTFAFL 129 (563)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCCeEEEECCCCCCccHHHH
Confidence 34579999999999997533
No 477
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.42 E-value=0.025 Score=44.82 Aligned_cols=23 Identities=17% Similarity=0.463 Sum_probs=20.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||+++..+....
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999998764
No 478
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=94.42 E-value=0.099 Score=52.03 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=18.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
++|+||.|+||||+.+.++.-
T Consensus 676 ~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 676 MIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEESCCCHHHHHHHHHHHHH
T ss_pred EEEECCCCCchHHHHHHHHHH
Confidence 799999999999999998643
No 479
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.41 E-value=0.019 Score=48.53 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=28.4
Q ss_pred CeEEEEEcCCC-CCCHHHHHHHHHHHhhcCCceEEEEecCc
Q 019145 155 PYKIIILDEAD-SMTEDAQNALRRTMETYSKVTRFFFICNY 194 (345)
Q Consensus 155 ~~~iliiDE~~-~l~~~~~~~l~~~le~~~~~~~ii~~~n~ 194 (345)
+++++++||.- .+.......+.+.+.+... .+|+++..
T Consensus 146 ~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd 184 (263)
T 2pjz_A 146 QPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHE 184 (263)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESC
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcC
Confidence 56799999954 5788888888888887655 45555544
No 480
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.40 E-value=0.023 Score=53.91 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=21.6
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.++|+|.+|+||||+++.+++.+
T Consensus 54 lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 54 TVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 47999999999999999999987
No 481
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.40 E-value=0.021 Score=44.69 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=20.0
Q ss_pred cEEEeCCCCCCHHHHHHHHHHH
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~ 105 (345)
.++|.|++|+|||++++.+...
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999865
No 482
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.39 E-value=0.096 Score=52.25 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=18.1
Q ss_pred EEEeCCCCCCHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~ 104 (345)
++|+||.|+||||+++.++-
T Consensus 665 ~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 665 HIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999999843
No 483
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.39 E-value=0.016 Score=45.61 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=19.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~ 104 (345)
..+++.|++|+|||+++..+..
T Consensus 19 ~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999988863
No 484
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.39 E-value=0.027 Score=44.60 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=19.9
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
++|.|++|+|||++++.+....
T Consensus 23 i~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999887754
No 485
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.36 E-value=0.027 Score=49.08 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=21.1
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhc
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~ 107 (345)
+.++|++|+||||++..++..+.
T Consensus 108 I~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998874
No 486
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.35 E-value=0.023 Score=44.30 Aligned_cols=23 Identities=22% Similarity=0.366 Sum_probs=20.3
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999998653
No 487
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.33 E-value=0.26 Score=42.50 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.8
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+.++|.||+||||++..+...-
T Consensus 13 v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 13 VAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 7999999999999999997653
No 488
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.33 E-value=0.024 Score=44.31 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=20.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+....
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998764
No 489
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.32 E-value=0.024 Score=46.24 Aligned_cols=20 Identities=35% Similarity=0.421 Sum_probs=17.8
Q ss_pred EEEeCCCCCCHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAH 104 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~ 104 (345)
+++.|++|+|||++++.+..
T Consensus 18 i~v~G~~~~GKSsli~~~~~ 37 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLT 37 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 89999999999999999443
No 490
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.31 E-value=0.026 Score=52.05 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.9
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHhc
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQLF 107 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l~ 107 (345)
.++++|.||+||||+++.+++.+.
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 479999999999999999999873
No 491
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.30 E-value=0.039 Score=47.63 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.7
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+.|.||+|+||||+++++. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 47999999999999999999 54
No 492
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.29 E-value=0.029 Score=49.29 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=22.1
Q ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 81 NCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 81 ~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
....+.|.||||+||||+++.++..+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 33347999999999999999998765
No 493
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.27 E-value=0.024 Score=44.74 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=19.0
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q 019145 85 MLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~ 105 (345)
++++|++|+|||++|..++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999854
No 494
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.25 E-value=0.028 Score=44.10 Aligned_cols=22 Identities=18% Similarity=0.493 Sum_probs=20.2
Q ss_pred EEEeCCCCCCHHHHHHHHHHHh
Q 019145 85 MLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l 106 (345)
+++.|++|+|||++++.+....
T Consensus 21 i~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7999999999999999998764
No 495
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.25 E-value=0.029 Score=44.46 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=20.4
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 38999999999999999998754
No 496
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.25 E-value=0.031 Score=44.93 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.3
Q ss_pred EEEeCCCCCCHHHHHHHHHHHhcC
Q 019145 85 MLFYGPPGTGKTTTALAIAHQLFG 108 (345)
Q Consensus 85 lll~G~~G~GKT~la~~la~~l~~ 108 (345)
+.|.|+.|+||||.++.+++.+..
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~ 26 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 578899999999999999998843
No 497
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=94.24 E-value=0.23 Score=48.94 Aligned_cols=37 Identities=19% Similarity=0.377 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcCCCCcEEEeCCCCCCHHHHHHHHHHHh
Q 019145 67 EEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 67 ~~~~~~l~~~l~~~~~~~lll~G~~G~GKT~la~~la~~l 106 (345)
+.....+..++. + .++++.+|+|+|||..+-..+...
T Consensus 251 ~~Q~~~i~~~l~-~--~~~ll~~~TGsGKTl~~~~~i~~~ 287 (797)
T 4a2q_A 251 SYQIELAQPAIN-G--KNALICAPTGSGKTFVSILICEHH 287 (797)
T ss_dssp HHHHHHHHHHHT-T--CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-C--CCEEEEeCCCChHHHHHHHHHHHH
Confidence 344444444443 2 469999999999998766665443
No 498
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.24 E-value=0.026 Score=50.51 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=28.6
Q ss_pred CeEEEEEcCC-CCCCHHHHHHHHHHHhhcCCceEEEEecCccc
Q 019145 155 PYKIIILDEA-DSMTEDAQNALRRTMETYSKVTRFFFICNYIS 196 (345)
Q Consensus 155 ~~~iliiDE~-~~l~~~~~~~l~~~le~~~~~~~ii~~~n~~~ 196 (345)
+.+++++||. ..|.......+...+.+......+|+++....
T Consensus 173 ~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e 215 (390)
T 3gd7_A 173 KAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIE 215 (390)
T ss_dssp TCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSG
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHH
Confidence 5679999994 45677777777777776544455666665543
No 499
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.21 E-value=0.029 Score=43.79 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.5
Q ss_pred cEEEeCCCCCCHHHHHHHHHHHh
Q 019145 84 HMLFYGPPGTGKTTTALAIAHQL 106 (345)
Q Consensus 84 ~lll~G~~G~GKT~la~~la~~l 106 (345)
.+++.|++|+|||++++.+...-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 38999999999999999998754
No 500
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=94.20 E-value=0.22 Score=48.15 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=19.2
Q ss_pred CcEEEeCCCCCCHHHHHHHHHHH
Q 019145 83 PHMLFYGPPGTGKTTTALAIAHQ 105 (345)
Q Consensus 83 ~~lll~G~~G~GKT~la~~la~~ 105 (345)
.++++.+|+|+|||..+...+..
T Consensus 29 ~~~iv~~~TGsGKTl~~~~~i~~ 51 (696)
T 2ykg_A 29 KNTIICAPTGCGKTFVSLLICEH 51 (696)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEcCCCchHHHHHHHHHHH
Confidence 46999999999999987766654
Done!