BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>019146
MHRSSPKFLREEFASCVSLIVQPSYNKCRSSYRIGVLVADCSNSRTYCTHNLLEPGSVKH
SSNIQVFSDSSKSFSSYIGNSPSFLSGESHSILQSSSLQHWFKNWQKLRKHKLTASTFAG
AIGFWPRRRVQLWLEKIGAIEPFLGNLATCWSNIKEEDALERYKLITGNTVYFTEFQVYR
DKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFFNGELTRASPWKRIPLYYIPQAQG
LMEILDRDWMDFYVWTPNGSSLFRVYRDLEYWDVMKMALSDFWWKHVQPAREMCSKYVIS
DPLKQLKPLKPTPRHELWSYLVYDSKRIIDNSSLLVREIGGKLQN

High Scoring Gene Products

Symbol, full name Information P value
AT1G13810 protein from Arabidopsis thaliana 1.7e-59
AT1G67660 protein from Arabidopsis thaliana 6.6e-42
DDB_G0269080 gene from Dictyostelium discoideum 3.4e-05

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  019146
        (345 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2014874 - symbol:AT1G13810 species:3702 "Arabi...   610  1.7e-59   1
TAIR|locus:2824070 - symbol:AT1G67660 species:3702 "Arabi...   444  6.6e-42   1
DICTYBASE|DDB_G0269080 - symbol:DDB_G0269080 species:4468...   118  3.4e-05   1


>TAIR|locus:2014874 [details] [associations]
            symbol:AT1G13810 species:3702 "Arabidopsis thaliana"
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518 "nuclease
            activity" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] InterPro:IPR011604 EMBL:CP002684 GO:GO:0003677
            GO:GO:0090305 Gene3D:3.90.320.10 InterPro:IPR011335 SUPFAM:SSF52980
            GO:GO:0004519 InterPro:IPR019080 Pfam:PF09588 EMBL:AY735513
            IPI:IPI00516737 RefSeq:NP_172836.1 UniGene:At.50929
            ProteinModelPortal:Q5XVK9 SMR:Q5XVK9 PaxDb:Q5XVK9 PRIDE:Q5XVK9
            EnsemblPlants:AT1G13810.1 GeneID:837942 KEGG:ath:AT1G13810
            TAIR:At1g13810 eggNOG:NOG149697 InParanoid:Q5XVK9 OMA:YIVYESK
            PhylomeDB:Q5XVK9 ProtClustDB:CLSN2913641 Genevestigator:Q5XVK9
            Uniprot:Q5XVK9
        Length = 303

 Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
 Identities = 120/244 (49%), Positives = 158/244 (64%)

Query:   101 WFKNWQKLRKHKLTASTFAGAIGFWPRRRVQLWLEKIGAIEPFLGNLATCWSNIKEEDAL 160
             W KNW+ LRK++LTAS FA AIGF P  R  LWLEKIGA +PF GN AT W    E +AL
Sbjct:    58 WRKNWEDLRKNRLTASNFARAIGFSPDGRRNLWLEKIGAAKPFAGNRATFWDIENEVEAL 117

Query:   161 ERYKLITGNTVYFTEFQVYRD-KSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFFNG 219
             ERY  +TGN +   EF VY++ +S +++WL ASPDG+++     + S GVLE+KCPF N 
Sbjct:   118 ERYNELTGNEILIPEFVVYKNGESPEENWLGASPDGVINVVKDGVTSCGVLEVKCPFDNR 177

Query:   220 ELTRASPWKRIPLYYIPQAQGLMEILDRDWMDFYVWTPNGSSLFRVYRDLEYWDVMKMAL 279
             + ++  PWK++P   +PQ QGLMEI+D DW+D Y WT NGSSLFRV+RD  +W+ MK AL
Sbjct:   178 DNSKVYPWKKVPYNCVPQLQGLMEIVDTDWLDLYCWTRNGSSLFRVWRDTAFWEDMKPAL 237

Query:   280 SDFWWKHVQPAREMCSKYVISDXXXXXXXXXXTPRHELWSYLVYDSKRIIDNSSLLVREI 339
              DFW  HV PARE+ + + I D             HE    ++  ++RI  N++ L  EI
Sbjct:   238 FDFWQNHVLPAREIYNNFDIKDPQVKLREFKPKHWHEDCKKIMRGAERISANANRLFYEI 297

Query:   340 GGKL 343
              G L
Sbjct:   298 DGNL 301


>TAIR|locus:2824070 [details] [associations]
            symbol:AT1G67660 species:3702 "Arabidopsis thaliana"
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518 "nuclease
            activity" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0009507 "chloroplast" evidence=ISM] InterPro:IPR011604
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0003677 GO:GO:0090305
            Gene3D:3.90.320.10 InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0004519
            InterPro:IPR019080 Pfam:PF09588 InterPro:IPR017482
            TIGRFAMs:TIGR03033 EMBL:BT005686 EMBL:AK118996 IPI:IPI00522372
            RefSeq:NP_176934.2 UniGene:At.35616 ProteinModelPortal:Q8GW93
            SMR:Q8GW93 STRING:Q8GW93 PaxDb:Q8GW93 PRIDE:Q8GW93
            EnsemblPlants:AT1G67660.1 GeneID:843091 KEGG:ath:AT1G67660
            TAIR:At1g67660 eggNOG:NOG265035 HOGENOM:HOG000240872
            InParanoid:Q8GW93 OMA:EIMDREW PhylomeDB:Q8GW93
            ProtClustDB:CLSN2680586 ArrayExpress:Q8GW93 Genevestigator:Q8GW93
            Uniprot:Q8GW93
        Length = 355

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 94/247 (38%), Positives = 133/247 (53%)

Query:   103 KNWQKLRKHKLTASTFAGAIGFWP-RRRVQLWLEKI----GAIEPFLGNLATCWSNIKEE 157
             + W  LRK KLT STF+ A+GFW   RR +LW EK+      +       A  W    E 
Sbjct:   119 EEWFALRKDKLTTSTFSTALGFWKGNRRAELWHEKVYDSDARVVEESARFAMNWGVQMES 178

Query:   158 DALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFF 217
              A+ERYK I G  V    F ++ ++  +  WL ASPDG++D F       G+LE+KCP+ 
Sbjct:   179 SAIERYKRIMGCEVGTMGFAIHSNE--EFHWLGASPDGILDCF-------GILEVKCPYN 229

Query:   218 NGELTRASPWKRIPLYYIPQAQGLMEILDRDWMDFYVWTPNGSSLFRVYRDLEYWDVMKM 277
              G+     PWK++P YY+PQ QG MEI+DR+W++ Y WT NGS++FRV RD  YW ++  
Sbjct:   230 KGKTETVLPWKKVPYYYMPQLQGQMEIMDREWVNLYCWTRNGSTVFRVMRDRSYWRIIHD 289

Query:   278 ALSDFWWKHVQPAREMCSKYVISDXXXXXXXXXXTPRHELWSYLVYDSKRIIDNSSLLVR 337
              L +FWW+ V PARE     ++            T  H+     +  S  +   S L+ R
Sbjct:   290 VLREFWWESVIPAREAL---LLGKEDEEVKKYEPTSTHKRTKLAIAKSLNLAAESKLVCR 346

Query:   338 EIGGKLQ 344
             EI   ++
Sbjct:   347 EIADHVE 353


>DICTYBASE|DDB_G0269080 [details] [associations]
            symbol:DDB_G0269080 species:44689 "Dictyostelium
            discoideum" [GO:0090305 "nucleic acid phosphodiester bond
            hydrolysis" evidence=IEA] [GO:0004518 "nuclease activity"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR011604 dictyBase:DDB_G0269080 GO:GO:0003677
            EMBL:AAFI02000004 GO:GO:0090305 Gene3D:3.90.320.10
            InterPro:IPR011335 SUPFAM:SSF52980 GO:GO:0004518
            ProtClustDB:CLSZ2429794 InterPro:IPR019080 Pfam:PF09588
            RefSeq:XP_646949.1 ProteinModelPortal:Q55ES1
            EnsemblProtists:DDB0216628 GeneID:8616638 KEGG:ddi:DDB_G0269080
            InParanoid:Q55ES1 OMA:LSIETIV InterPro:IPR017482 TIGRFAMs:TIGR03033
            Uniprot:Q55ES1
        Length = 192

 Score = 118 (46.6 bits), Expect = 3.4e-05, P = 3.4e-05
 Identities = 50/173 (28%), Positives = 71/173 (41%)

Query:   103 KNWQKLR-KHKLTASTFAGAIGFWP---RRRVQLWLEKIGAIEPFLGNLAT-CWSNIKEE 157
             K W++ R K+ LT S  A AIG  P   +  ++L L K     PF  +       + K +
Sbjct:    22 KKWEEAREKYSLTGSRLAAAIGIDPYTSQHDLKLILAKKKT--PFFSDYCKKAMEHGKHQ 79

Query:   158 DALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFV--YD--LPSGGVLEIK 213
             + + R            E  ++      D  +  SPDG++   V   D  L   GV+EIK
Sbjct:    80 EPIAREFYFNELETSIIEKGIF--PLPGDKRIGCSPDGVIYTTVPGKDGVLQREGVIEIK 137

Query:   214 CPF----FNGELTRASP-----WKRIPLYYIPQAQGLMEILDRDWMDFYVWTP 257
             CP     F+G      P      ++IPL YIPQ    M      W D+  W P
Sbjct:   138 CPLSTTNFSGLKNGRKPDALANAQKIPLDYIPQIFANMACTGAQWCDYICWVP 190


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.137   0.449    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      345       313   0.00081  116 3  11 22  0.37    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  621 (66 KB)
  Total size of DFA:  265 KB (2138 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.94u 0.12s 21.06t   Elapsed:  00:00:01
  Total cpu time:  20.94u 0.12s 21.06t   Elapsed:  00:00:01
  Start:  Fri May 10 23:29:45 2013   End:  Fri May 10 23:29:46 2013

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