BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019146
         (345 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P03697|EXO_LAMBD Exonuclease OS=Enterobacteria phage lambda GN=exo PE=1 SV=1
          Length = 226

 Score = 43.9 bits (102), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 59/147 (40%), Gaps = 23/147 (15%)

Query: 105 WQKLRKHKLTASTFAGAIGF------WPRRRVQ----LWLEKIGAIEPFLGNLATCWSNI 154
           W KLR   +TAS     I        WP  ++     L  E    + P +   A  W   
Sbjct: 24  WHKLRLGVITASEVHNVIAKPRSGKKWPDMKMSYFHTLLAEVCTGVAPEVNAKALAWGKQ 83

Query: 155 KEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKC 214
            E DA   ++  +G  V  +   +YRD+S      A SPDGL          G  LE+KC
Sbjct: 84  YENDARTLFEFTSGVNVTESPI-IYRDESMR---TACSPDGLCS-------DGNGLELKC 132

Query: 215 PFFNGELT--RASPWKRIPLYYIPQAQ 239
           PF + +    R   ++ I   Y+ Q Q
Sbjct: 133 PFTSRDFMKFRLGGFEAIKSAYMAQVQ 159


>sp|Q0URQ5|M28P1_PHANO Probable zinc metalloprotease SNOG_05559 OS=Phaeosphaeria nodorum
           (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=SNOG_05559
           PE=3 SV=1
          Length = 959

 Score = 32.7 bits (73), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 194 DGLVDRFVYDLPSGGVLEIKCP---FFNGELTRASPWKRIPLYYIPQAQGLMEILDRD-W 249
           DG V R V DLPS    +I C      N +      W  +P   + +A       D D W
Sbjct: 766 DGYVQRIVADLPSAQGEQINCTTPEAANRKELMTCTWPGLPAQVVTRASRFSNKTDTDGW 825

Query: 250 MDFYVWTPN 258
           +DF + T N
Sbjct: 826 LDFSITTSN 834


>sp|A8GQ54|TIG_RICAH Trigger factor OS=Rickettsia akari (strain Hartford) GN=tig PE=3
           SV=1
          Length = 445

 Score = 32.7 bits (73), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 7/93 (7%)

Query: 25  YNKCR-SSYRIGVLVADCSNSRTYCTHNLLEPGSVKH--SSNIQVFSDSSKSFSSYIGNS 81
           YNK      RIG+L+A+ + S+       LEP  ++       + F         +  N+
Sbjct: 339 YNKVALRRVRIGLLLAEYAKSKNLQ----LEPDDLRKVIMQRARNFPGQENMIFDFYKNN 394

Query: 82  PSFLSGESHSILQSSSLQHWFKNWQKLRKHKLT 114
           PS + G     L+  ++Q+ F N  KL++ K T
Sbjct: 395 PSAIEGLKGPALEDKAVQYIFNNEIKLKEKKYT 427


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.136    0.436 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,199,347
Number of Sequences: 539616
Number of extensions: 5812428
Number of successful extensions: 11915
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 11915
Number of HSP's gapped (non-prelim): 5
length of query: 345
length of database: 191,569,459
effective HSP length: 118
effective length of query: 227
effective length of database: 127,894,771
effective search space: 29032113017
effective search space used: 29032113017
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)