Query 019146
Match_columns 345
No_of_seqs 209 out of 791
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:04:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019146.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019146hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03033 phage_rel_nuc putati 100.0 1.9E-39 4.2E-44 283.3 13.7 150 97-257 1-152 (153)
2 PF09588 YqaJ: YqaJ-like viral 100.0 1.6E-34 3.6E-39 250.2 6.1 140 104-248 1-152 (152)
3 COG5377 Phage-related protein, 100.0 7.3E-29 1.6E-33 227.4 7.6 179 103-294 16-200 (319)
4 PF01771 Herpes_alk_exo: Herpe 99.7 7.9E-17 1.7E-21 162.9 6.3 131 83-219 89-231 (465)
5 PHA03293 deoxyribonuclease; Pr 99.2 6E-11 1.3E-15 120.5 8.7 125 86-218 121-282 (523)
6 TIGR00372 cas4 CRISPR-associat 95.0 0.71 1.5E-05 40.5 12.9 144 114-283 2-149 (178)
7 PF01930 Cas_Cas4: Domain of u 94.9 0.45 9.7E-06 41.4 11.4 131 114-283 1-134 (162)
8 PHA00619 CRISPR-associated Cas 93.0 1.5 3.2E-05 40.1 11.3 154 109-289 19-178 (201)
9 PF13366 PDDEXK_3: PD-(D/E)XK 75.9 3.4 7.3E-05 34.8 3.6 47 192-257 62-108 (118)
10 COG1468 CRISPR-associated prot 65.2 1.1E+02 0.0024 27.8 12.7 140 110-281 13-158 (190)
11 PHA01622 CRISPR-associated Cas 60.8 1.4E+02 0.0029 27.4 12.5 132 129-282 29-166 (204)
12 PF13588 HSDR_N_2: Type I rest 48.7 15 0.00032 29.8 2.4 65 192-270 38-103 (112)
13 PF15649 Tox-REase-7: Restrict 39.6 1.2E+02 0.0026 24.2 6.2 69 152-249 2-73 (87)
14 PRK14676 hypothetical protein; 39.4 49 0.0011 27.7 4.2 32 145-177 3-34 (117)
15 PHA02943 hypothetical protein; 32.1 1.4E+02 0.0031 26.4 6.0 48 235-284 38-85 (165)
16 PRK14689 hypothetical protein; 30.7 80 0.0017 26.8 4.1 54 149-217 8-61 (124)
17 PRK14679 hypothetical protein; 25.6 1.1E+02 0.0024 26.0 4.2 57 147-218 13-69 (128)
18 PRK14675 hypothetical protein; 25.3 1E+02 0.0023 26.0 3.9 53 149-216 8-60 (125)
19 PF09954 DUF2188: Uncharacteri 25.2 84 0.0018 22.8 3.0 34 311-344 21-57 (62)
20 PRK14684 hypothetical protein; 24.9 1.3E+02 0.0027 25.3 4.3 54 148-216 5-58 (120)
21 PRK14673 hypothetical protein; 24.7 1.2E+02 0.0026 26.2 4.2 54 149-216 26-79 (137)
22 PRK14686 hypothetical protein; 24.3 1.3E+02 0.0029 25.1 4.3 54 149-217 5-58 (119)
23 PRK14674 hypothetical protein; 24.2 1.5E+02 0.0032 25.4 4.7 53 149-216 5-57 (133)
24 PF10122 Mu-like_Com: Mu-like 23.3 42 0.0009 24.1 0.9 11 208-218 21-31 (51)
25 PRK14683 hypothetical protein; 23.2 1.3E+02 0.0029 25.4 4.2 54 147-215 11-64 (122)
26 PRK14681 hypothetical protein; 23.1 1.7E+02 0.0036 25.9 4.9 55 148-216 42-96 (158)
27 TIGR00252 conserved hypothetic 23.0 1.4E+02 0.003 25.0 4.3 52 150-216 7-58 (119)
28 PRK14687 hypothetical protein; 22.9 2.3E+02 0.005 25.5 5.8 31 145-176 26-56 (173)
29 PRK14685 hypothetical protein; 22.8 1.4E+02 0.003 27.0 4.4 56 146-216 39-94 (177)
30 PRK14678 hypothetical protein; 22.4 1.7E+02 0.0037 24.5 4.6 55 148-217 5-59 (120)
31 PRK14688 hypothetical protein; 21.2 1.5E+02 0.0033 24.9 4.1 53 149-216 6-58 (121)
32 PRK12497 hypothetical protein; 21.1 1.3E+02 0.0028 25.0 3.7 54 149-217 6-59 (119)
33 PRK14680 hypothetical protein; 20.1 1.3E+02 0.0028 25.9 3.5 53 150-217 7-59 (134)
No 1
>TIGR03033 phage_rel_nuc putative phage-type endonuclease. Members of this protein family are found often in phage genomes and in prokaryotic genomes in uncharacterized regions that resemble integrated prophage regions.
Probab=100.00 E-value=1.9e-39 Score=283.29 Aligned_cols=150 Identities=29% Similarity=0.343 Sum_probs=126.7
Q ss_pred cccCCCHHHHHHhcCCcccchHHHhhcCCCC-ChHHHHHHHhcCCCCCCchHHHHHHHHhhHHHHHHHHHHhCCeeeeec
Q 019146 97 SLQHWFKNWQKLRKHKLTASTFAGAIGFWPR-RRVQLWLEKIGAIEPFLGNLATCWSNIKEEDALERYKLITGNTVYFTE 175 (345)
Q Consensus 97 ~~qq~s~eW~~~R~~rITAS~~~~ilG~~~~-s~~~L~~eKiG~~~~~~~n~am~~G~~~E~~A~~~ye~~~g~~V~~~G 175 (345)
+++|+|++|+++|+++||||++++++|.++| ++.+||.+|+|...++..|++|+||+.+||.|++.|+..++. +..++
T Consensus 1 ~~~Q~s~eWl~~R~~~ItaS~~~~i~g~s~~~t~~~L~~ek~g~~~~~~~~~~~~~G~~~Ep~a~~~~~~~~~~-~~~~~ 79 (153)
T TIGR03033 1 DLVQRTEEWHAWRKGGITASDIAAIMGLNPYKTPEELWKEKTGFVEPEDMNEAMYHGVKLEPEAREAFRDKYGI-MAEPF 79 (153)
T ss_pred CcccCHHHHHHHHhcCCCHhHHHHHHCCCccCCHHHHHHHHhCCCCCccccHHHHHhHhhhHHHHHHHHhcCCe-EEeCc
Confidence 3789999999999999999999999999999 999999999998776667999999999999999987766554 34556
Q ss_pred eEeeccCCCCCCccccCCCCcccccccCCCCCceEEeeccCcCCccccc-CCCCCCCcccHHHHHHHhhhhcCCceeEEE
Q 019146 176 FQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFFNGELTRA-SPWKRIPLYYIPQAQGLMEILDRDWMDFYV 254 (345)
Q Consensus 176 ~~i~~~~~~~~p~lgASPDGlv~~~~~g~~~~gilEIKcP~~~~~~~~~-~~~~~iP~~Y~~QvQ~QM~Vtg~~~~dfvv 254 (345)
++. ++++|||+|||||++.+ +.++||||||+........ ..-+.+|.+|++|||+||+|+|+++|||++
T Consensus 80 ~~~----~~~~~~~~aSpDg~~~~------~~~ilEiK~~~~~~~~~w~~~~~~~iP~~Y~~QvQ~ql~vtg~~~~~f~~ 149 (153)
T TIGR03033 80 CLE----HDEYPWMAASLDGLVAD------DKQILEIKCPSERVSKLWVSELSGEVPAYYQAQVQWQLYVSGSQAAYFAV 149 (153)
T ss_pred EEe----cCCCCeEEECCceeecC------CCceEEEecCCcccchhhhhhccCCCcHHHHHHHHHHHhccCCCeEEEEE
Confidence 554 67899999999999852 6799999999865321100 011479999999999999999999999999
Q ss_pred EeC
Q 019146 255 WTP 257 (345)
Q Consensus 255 ~~~ 257 (345)
|.+
T Consensus 150 ~~~ 152 (153)
T TIGR03033 150 YIG 152 (153)
T ss_pred EeC
Confidence 986
No 2
>PF09588 YqaJ: YqaJ-like viral recombinase domain; InterPro: IPR019080 This protein is found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit []. ; PDB: 3SZ5_A 3SZ4_A 3SYY_A 3K93_A 1AVQ_A 3SM4_C 3SLP_A.
Probab=100.00 E-value=1.6e-34 Score=250.25 Aligned_cols=140 Identities=36% Similarity=0.543 Sum_probs=102.0
Q ss_pred HHHHHhcCCcccchHHHhhcCCCC-ChHHHHHHHhcC------CCCCCchHHHHHHHHhhHHHHHHHHHHhCCeeee-ec
Q 019146 104 NWQKLRKHKLTASTFAGAIGFWPR-RRVQLWLEKIGA------IEPFLGNLATCWSNIKEEDALERYKLITGNTVYF-TE 175 (345)
Q Consensus 104 eW~~~R~~rITAS~~~~ilG~~~~-s~~~L~~eKiG~------~~~~~~n~am~~G~~~E~~A~~~ye~~~g~~V~~-~G 175 (345)
||+++|+++||||++++++|.+++ ++.+||.+|+|. ..++.+|.+|+||+.+|+.|++.|++.+|..|.+ .|
T Consensus 1 eW~~~R~~~ItaS~~~~i~g~~~~~~~~~l~~~k~~~~~~~~~~~~~~~~~~~~~G~~~E~~a~~~~~~~~~~~v~~~~~ 80 (152)
T PF09588_consen 1 EWLELRRGGITASEAAAILGISPYKTPFSLWREKLGERITEDLESPFSGNKAMQWGHELEPLARQFYEEKTGLEVKEPNG 80 (152)
T ss_dssp HHHHHCTT-EEGGGHHHHH---SS-HHHHHHHHHHHHHHHSCH--S--SHHHHHHHHHHHHHHHHHHHHHHT--EE---S
T ss_pred ChhHHHCCCcCHhHHHHHHCCCCCCCHHHHHHHHhCccccCCcCCcchhHHHHHHHHHhhHHHHHHHHHHhccceEecce
Confidence 799999999999999999999999 999999999976 3466789999999999999999999999999998 48
Q ss_pred eEeeccCCCCCCccccCCCCcccccccCCCCCceEEeeccCcCCcccc---cCC-CCCCCcccHHHHHHHhhhhcCC
Q 019146 176 FQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFFNGELTR---ASP-WKRIPLYYIPQAQGLMEILDRD 248 (345)
Q Consensus 176 ~~i~~~~~~~~p~lgASPDGlv~~~~~g~~~~gilEIKcP~~~~~~~~---~~~-~~~iP~~Y~~QvQ~QM~Vtg~~ 248 (345)
+++ ++++|||+|||||++.|...+ ...++||||||+....... ... .+++|.+||+|||+||+|+|++
T Consensus 81 ~~~----~~~~~~l~aSpDg~~~~~~~~-~~~~~lEiK~~~~~~~~~~~~~~~~~~~~ip~~Y~~QvQ~qm~vtg~e 152 (152)
T PF09588_consen 81 LFI----HPDHPWLGASPDGLVVCPSGG-EERGLLEIKCPYSPKFISYKWGEAGESDKIPHYYYAQVQHQMAVTGAE 152 (152)
T ss_dssp -EE----SSCTTSEEE--SEEE--GCTT--CTEEEEEEE-SHHHHHHHHHHCGG-HHCCHHHHHHHHHHHHHHHT-S
T ss_pred eEE----cCccceeeecCCEEEeeccCC-CccceEEEecCCchhhhhhhhcccccccCCCHHHHHHHHHHHHHHCcC
Confidence 877 678999999999999853211 1389999999986322111 001 1379999999999999999985
No 3
>COG5377 Phage-related protein, predicted endonuclease [DNA replication, recombination, and repair]
Probab=99.95 E-value=7.3e-29 Score=227.38 Aligned_cols=179 Identities=25% Similarity=0.303 Sum_probs=156.5
Q ss_pred HHHHHHhcCCcccchHHHhhcCCCC-ChHHHHHHHhcCCCCC-CchHHHHHHHHhhHHHHHHHHHHhCCeeeeeceEeec
Q 019146 103 KNWQKLRKHKLTASTFAGAIGFWPR-RRVQLWLEKIGAIEPF-LGNLATCWSNIKEEDALERYKLITGNTVYFTEFQVYR 180 (345)
Q Consensus 103 ~eW~~~R~~rITAS~~~~ilG~~~~-s~~~L~~eKiG~~~~~-~~n~am~~G~~~E~~A~~~ye~~~g~~V~~~G~~i~~ 180 (345)
.+|+..|+.+|+||+++.+||+++| +|++||++|.|..+|. +...+-.||..+|++++..|++.+|.+|..|..+.
T Consensus 16 ~qWl~~R~~glggSDA~~imGln~ykt~fELwlekt~qv~p~~~qseaayfg~~~Eevva~eferrtGkkvrr~~~i~-- 93 (319)
T COG5377 16 TQWLTHRRQGLGGSDAPIIMGLNKYKTPFELWLEKTGQVTPDESQSEAAYFGELLEEVVAKEFERRTGKKVRRCNAIL-- 93 (319)
T ss_pred HHHHHHHHhcCCCcchhhhhcCCccCCHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhh--
Confidence 3999999999999999999999999 9999999999877665 45688999999999999999999999999998766
Q ss_pred cCCCCCCccccCCCCcccccccCCCCCceEEeeccCcCCcccccCCCC--CCCcccHHHHHHHhhhhc-CCceeEEEEeC
Q 019146 181 DKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFFNGELTRASPWK--RIPLYYIPQAQGLMEILD-RDWMDFYVWTP 257 (345)
Q Consensus 181 ~~~~~~p~lgASPDGlv~~~~~g~~~~gilEIKcP~~~~~~~~~~~~~--~iP~~Y~~QvQ~QM~Vtg-~~~~dfvv~~~ 257 (345)
+||++.|++|+.|..+. | +..+||+||...+. ...|. ++|..|..|||||++|+| -..++|.|..+
T Consensus 94 -~hp~~~F~~anvdr~vV----g--E~aiLeckT~sA~m----~~ew~~~eiP~~Y~vQmqHyl~V~Ge~rk~y~Avlig 162 (319)
T COG5377 94 -RHPEYDFILANVDRDVV----G--EKAILECKTTSAYM----AKEWEDDEIPFHYIVQMQHYLGVLGEYRKAYFAVLIG 162 (319)
T ss_pred -cCccchhhhhhhHHHhh----h--hhhhhccchHHHHH----hcccccccCcHHHHHHHHHHHhhhhhhhhhhheeeec
Confidence 59999999999999886 3 68899999965431 23454 899999999999999999 56678877544
Q ss_pred -CCceEEEEeCCHHHHHHHHHHHHHHHHHhccCCcccc
Q 019146 258 -NGSSLFRVYRDLEYWDVMKMALSDFWWKHVQPAREMC 294 (345)
Q Consensus 258 -~~~~i~rV~RDe~~i~~i~~~~~eFw~~~V~p~~e~~ 294 (345)
+.+.-.+|+||++.+..|+....+||.++|+-...|.
T Consensus 163 G~kfiwkeierddeLin~Ii~~e~~fw~d~v~~~~pPa 200 (319)
T COG5377 163 GNKFIWKEIERDDELINMIINAEIDFWNDIVLGPVPPA 200 (319)
T ss_pred cchhHHHHhhhhHHHHHHHHHHHHHHHhhccccCCCCC
Confidence 6788889999999999999999999999988766664
No 4
>PF01771 Herpes_alk_exo: Herpesvirus alkaline exonuclease; InterPro: IPR001616 Equid herpesvirus 1 (Equine herpesvirus 1) is a respiratory virus capable of causing abortion and neurological disease. Its complete DNA sequence has been determined [] and the constituent genes found to be arranged co-linearly with those in the genomes of other alphaherpesviruses, namely Human herpesvirus 3 (HHV-3) and Human herpesvirus 1 (HHV-1) []. Comparisons of the predicted amino acid sequences have allowed functions of many EHV-1 proteins to be inferred. For example, detailed analysis of HHV-1 and Human herpesvirus 2 (HHV-2) DNA has revealed an open reading frame sufficient to encode 626 amino acids for the HHV-1 alkaline exonuclease (620 amino acids for HHV-2) []. Comparison of the predicted amino acid sequences of the viral enzymes has revealed significant differences in the N-terminal portions of the proteins; nevertheless, their three-dimensional structures are believed to be similar.; GO: 0003677 DNA binding, 0004527 exonuclease activity; PDB: 3FHD_A 3POV_A 2W45_B 2W4B_B.
Probab=99.66 E-value=7.9e-17 Score=162.92 Aligned_cols=131 Identities=19% Similarity=0.061 Sum_probs=88.0
Q ss_pred CCCHHHHHHHhhhccccCCCHHHHHHhcCCcccchHHHhhcCCCCChHHHHHHHhcCCCCCCchHHHHHHHHhhHHHHHH
Q 019146 83 SFLSGESHSILQSSSLQHWFKNWQKLRKHKLTASTFAGAIGFWPRRRVQLWLEKIGAIEPFLGNLATCWSNIKEEDALER 162 (345)
Q Consensus 83 ~it~~e~~~ie~~t~~qq~s~eW~~~R~~rITAS~~~~ilG~~~~s~~~L~~eKiG~~~~~~~n~am~~G~~~E~~A~~~ 162 (345)
..+.+++..||+.|++|+.|+.|+.+|.+++|||.+...+.....++. + ....+.......+.+|.+|..+|+.|+..
T Consensus 89 ~~~~e~~~~IE~~TRGQS~N~LW~lLR~~riTAS~~~~~~~~~~~~~~-l-~~~~~~~~~~~~~~av~fG~~~E~~vk~l 166 (465)
T PF01771_consen 89 RRTREIILRIEKATRGQSENPLWHLLRLGRITASKFYWVCKGPNSSPA-L-FKGNPIQNNHYQSEAVAFGLRNEPVVKKL 166 (465)
T ss_dssp HHHHHHHHHHHHCTTTGCCSCCHHHHCTTSEECCCHHHHHCT-CTTTG-C-CS-------SS--SHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhcCccchhHHHHHCCceeeccceeeccCCcCcHH-H-hccccccccccCcHHHHhchhhHHHHHHH
Confidence 345688999999999999999999999999999999999863222111 1 11101111123567999999999999999
Q ss_pred HHHHhC-----CeeeeeceEeeccCCCCCCccccCCCCcccccccCC-------CCCceEEeeccCcCC
Q 019146 163 YKLITG-----NTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDL-------PSGGVLEIKCPFFNG 219 (345)
Q Consensus 163 ye~~~g-----~~V~~~G~~i~~~~~~~~p~lgASPDGlv~~~~~g~-------~~~gilEIKcP~~~~ 219 (345)
+++..- ..|.+|||++ ++..+++|||||.++.....|+ ....++||||||++.
T Consensus 167 i~~~v~~~~~~~~v~~CGLfi----sp~~Gl~gASpD~~f~r~~~g~~~~~~~~~~~~vyEIKCr~KY~ 231 (465)
T PF01771_consen 167 IEELVVKTRDSEEVLDCGLFI----SPRTGLFGASPDAYFCRDETGELGPLEFEPDIVVYEIKCRYKYL 231 (465)
T ss_dssp HHHCTSS-TTSTCE-----EE-----TTTSSEEE--SEEEC-EEEECTTEEEEECCCEEEEEEEEGCC-
T ss_pred HHHhhccccCCCcccceeeee----cCCCCccccchhheeeeccCCCCCccccCCceEEEEEecccccc
Confidence 888763 4799999999 7788999999999986111221 246679999999874
No 5
>PHA03293 deoxyribonuclease; Provisional
Probab=99.17 E-value=6e-11 Score=120.53 Aligned_cols=125 Identities=22% Similarity=0.117 Sum_probs=86.7
Q ss_pred HHHHHHHhhhccccCCCHHHHHHhcCCcccchHHHhhcCCC-CChHHHHHHHh-cCCCCCCchHHHHHHHHhhHHHHHHH
Q 019146 86 SGESHSILQSSSLQHWFKNWQKLRKHKLTASTFAGAIGFWP-RRRVQLWLEKI-GAIEPFLGNLATCWSNIKEEDALERY 163 (345)
Q Consensus 86 ~~e~~~ie~~t~~qq~s~eW~~~R~~rITAS~~~~ilG~~~-~s~~~L~~eKi-G~~~~~~~n~am~~G~~~E~~A~~~y 163 (345)
.+.+..||..|++|+.++.|+.+|.+++|||.+.- |.+. ....+ |.+.- +. .....+.||.+|+.+|+.|+..+
T Consensus 121 ~~~~~~vE~~TRGQS~N~LW~lLR~~~iTAS~~~w--~~~g~~~~p~-~~~~~~~~-~~~~~s~Av~FG~~nE~~vK~Ll 196 (523)
T PHA03293 121 RDILLFVEAATRNQAECDLWALLRRGLLTASTLKW--GANGPCFPPQ-WCKVNTGA-RGIPQSAAVAFGRTNEPLARALI 196 (523)
T ss_pred HHHHHHHHHHhhcCccCHHHHHHHcCCceecceec--cCCCCccCcc-cccccccc-cccccchHhhhchhhhHHHHHHH
Confidence 35788999999999999999999999999998763 1111 10001 11111 11 01124689999999999999988
Q ss_pred HHHhC---------------------------CeeeeeceEeeccCCCCCCccccCCCCcccccc-cC-------CCCCc
Q 019146 164 KLITG---------------------------NTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFV-YD-------LPSGG 208 (345)
Q Consensus 164 e~~~g---------------------------~~V~~~G~~i~~~~~~~~p~lgASPDGlv~~~~-~g-------~~~~g 208 (345)
+...- .....||+++ ++..+.+|||.|-.+...- .| .....
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~f~f~~~~~~~~~~~~~cGlLi----Dp~tG~~GASLDm~v~~rd~~G~L~~~~~~~~~~ 272 (523)
T PHA03293 197 EAYCVGPSTDDGGTDPDDGEFFVFDEPVGSPPEEAYACGLLI----DARTGMVGASLDMLVCDRDPHGVLAPHPTQTTLE 272 (523)
T ss_pred HHHccCCcccccccccccccceecccccCCCCCcceeeeeEe----cCCCCcccccCceEecccCCCCcccccCCCCcee
Confidence 87531 1244689988 7888999999999873210 11 11366
Q ss_pred eEEeeccCcC
Q 019146 209 VLEIKCPFFN 218 (345)
Q Consensus 209 ilEIKcP~~~ 218 (345)
+.||||-+.+
T Consensus 273 iyEIKCRaKY 282 (523)
T PHA03293 273 FFEIKCRAKY 282 (523)
T ss_pred EEEEeccccc
Confidence 8999998765
No 6
>TIGR00372 cas4 CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.
Probab=94.95 E-value=0.71 Score=40.47 Aligned_cols=144 Identities=16% Similarity=0.079 Sum_probs=82.8
Q ss_pred ccchHHHhhcCCCCChHHHHHHHhcCCCCCCchHHHHHHHHhhHHHHHHHHHHhCCeeeeeceEeeccCCCCCCccccCC
Q 019146 114 TASTFAGAIGFWPRRRVQLWLEKIGAIEPFLGNLATCWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASP 193 (345)
Q Consensus 114 TAS~~~~ilG~~~~s~~~L~~eKiG~~~~~~~n~am~~G~~~E~~A~~~ye~~~g~~V~~~G~~i~~~~~~~~p~lgASP 193 (345)
+.|.+...+=+ |...|.+..+..... .+..|.-|......+.+.. +..+....+-...+. +..+ .+.+.+
T Consensus 2 ~~s~i~~~~~C----pR~~~~~~~~~~~~~-~~~~~~~G~~~h~~~~~~~-~~~~~~~~~~~v~l~---~~~~-~l~G~i 71 (178)
T TIGR00372 2 TVSDVLEYLYC----PRKLWYMKKGGSERF-SEVRMILGRLIHERAESFL-KSLGGVREEKEVPLK---SKKL-GLKGVI 71 (178)
T ss_pred ChHHhHHHHhC----hHHHHHHHhhccccc-chhHHHHHHHHHHHhhhhh-hccCCEEEEEeeEeE---cccC-CcEEEE
Confidence 44444444333 667888887433322 3456999997765554332 222222223344443 3233 478899
Q ss_pred CCcccccccCCCCCceEEeeccCcCCcccccCCCCCCCcccHHHHHHHhhhhcCCce----eEEEEeCCCceEEEEeCCH
Q 019146 194 DGLVDRFVYDLPSGGVLEIKCPFFNGELTRASPWKRIPLYYIPQAQGLMEILDRDWM----DFYVWTPNGSSLFRVYRDL 269 (345)
Q Consensus 194 DGlv~~~~~g~~~~gilEIKcP~~~~~~~~~~~~~~iP~~Y~~QvQ~QM~Vtg~~~~----dfvv~~~~~~~i~rV~RDe 269 (345)
|.+... + .+..++|+|+.... . ...|..|++.|.++...... -+++|...+. ...|..|+
T Consensus 72 D~i~~~---~-~~~~ive~Ktg~~~-------~----~~~~~~Ql~~Ya~~l~~~~~~v~~g~l~y~~~~~-~~~v~~~~ 135 (178)
T TIGR00372 72 DVVLEA---D-GELVPVEVKSGKPK-------L----REAHKYQLLAYAYLLEEMYGEIVRGYILYIEAGK-KLEVEISE 135 (178)
T ss_pred EEEEEE---C-CeEEEEEEecCCCC-------C----ChhHHHHHHHHHHHHHHhhCCCCcEEEEEEeCCc-EEEecCCH
Confidence 988752 1 13458999996432 0 15788899999888754432 2334544443 44888898
Q ss_pred HHHHHHHHHHHHHH
Q 019146 270 EYWDVMKMALSDFW 283 (345)
Q Consensus 270 ~~i~~i~~~~~eFw 283 (345)
+..+.+.+.+.+.-
T Consensus 136 ~~~~~~~~~~~~i~ 149 (178)
T TIGR00372 136 ELRKKAEKLIEKIR 149 (178)
T ss_pred HHHHHHHHHHHHHH
Confidence 87776666655543
No 7
>PF01930 Cas_Cas4: Domain of unknown function DUF83; InterPro: IPR022765 This entry represents an uncharacterised domain found in several proteins, including DNA replication helicase Dna2, clustered regularly interspaced short palindromic repeats (CRISPR)-associated exonuclease Cas4 and putative RecB family exonuclease proteins.
Probab=94.91 E-value=0.45 Score=41.37 Aligned_cols=131 Identities=16% Similarity=0.026 Sum_probs=79.7
Q ss_pred ccchHHHhhcCCCCChHHHHHHHhcCCCCCCchHHHHHHHHhhHHHHHHHHHHhCCeeeeeceEeeccCCCCCCccccCC
Q 019146 114 TASTFAGAIGFWPRRRVQLWLEKIGAIEPFLGNLATCWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASP 193 (345)
Q Consensus 114 TAS~~~~ilG~~~~s~~~L~~eKiG~~~~~~~n~am~~G~~~E~~A~~~ye~~~g~~V~~~G~~i~~~~~~~~p~lgASP 193 (345)
|+|++-..+=+ |..+|+...+.... ..+..|..|..... ..|.+.. .++.+. + .+-+
T Consensus 1 t~s~v~~y~~C----pR~~~l~~~~~~~~-~~~~~~~~G~~~h~---~~~~~~~------~~v~vs-----~----~G~i 57 (162)
T PF01930_consen 1 TGSMVNEYVYC----PRRAYLERVGIEPE-EPTESMELGRELHE---ERYEREK------REVPVS-----E----SGKI 57 (162)
T ss_pred CHHHhhHHHHc----cHHHHHHHcCCccc-CCHhHHHhhHHhhh---hhhhhcc------eeeccC-----C----cEEE
Confidence 44554444332 67889998865332 24568898987655 2233211 222221 1 7888
Q ss_pred CCcccccccCCCCCceEEeeccCcCCcccccCCCCCCCcccHHHHHHHhhhhc---CCceeEEEEeCCCceEEEEeCCHH
Q 019146 194 DGLVDRFVYDLPSGGVLEIKCPFFNGELTRASPWKRIPLYYIPQAQGLMEILD---RDWMDFYVWTPNGSSLFRVYRDLE 270 (345)
Q Consensus 194 DGlv~~~~~g~~~~gilEIKcP~~~~~~~~~~~~~~iP~~Y~~QvQ~QM~Vtg---~~~~dfvv~~~~~~~i~rV~RDe~ 270 (345)
|.+... .....++|+|..... ...+..|+..|+++.. .+.-.-+++...+-...+|+.|++
T Consensus 58 D~v~~~----~~~~~~~E~K~~~~~------------~~~~~~Ql~~Y~~lL~~~g~~v~~G~i~y~~~~~~~~v~~~~~ 121 (162)
T PF01930_consen 58 DIVEKG----GGEIIPVEIKSGRKP------------REEHRMQLAAYALLLEEFGIPVKRGYIYYIEDRKRVRVEITEE 121 (162)
T ss_pred EEEEEe----CCEEEEEEEecCCCC------------cchhHHHHHHHHHHHHhcCccceeEEEEEecCCeEEEEeCCHH
Confidence 888741 125678999976431 2345889999998876 222212344455666777999998
Q ss_pred HHHHHHHHHHHHH
Q 019146 271 YWDVMKMALSDFW 283 (345)
Q Consensus 271 ~i~~i~~~~~eFw 283 (345)
..+.+.+.+.++-
T Consensus 122 ~~~~v~~~i~~i~ 134 (162)
T PF01930_consen 122 LRRKVEKLIEEIR 134 (162)
T ss_pred HHHHHHHHHHHHH
Confidence 8887777777766
No 8
>PHA00619 CRISPR-associated Cas4-like protein
Probab=92.98 E-value=1.5 Score=40.10 Aligned_cols=154 Identities=8% Similarity=-0.006 Sum_probs=81.2
Q ss_pred hcCCcccchHHHhhcCCCCChHHHHHHHhcCC-C-CCCchHHHHHHHHhhHHHHHHHHHHhCCeeeeec-eEeeccCCCC
Q 019146 109 RKHKLTASTFAGAIGFWPRRRVQLWLEKIGAI-E-PFLGNLATCWSNIKEEDALERYKLITGNTVYFTE-FQVYRDKSRD 185 (345)
Q Consensus 109 R~~rITAS~~~~ilG~~~~s~~~L~~eKiG~~-~-~~~~n~am~~G~~~E~~A~~~ye~~~g~~V~~~G-~~i~~~~~~~ 185 (345)
|.+.|..|+++.+ +..+|....+.. + .......|.-|+..-....+...+ .+....... ..+ .
T Consensus 19 ~~~~i~~sd~~~C-------pRk~w~~~~~~~~~~~~~~~~~~~~G~~iHe~~~~~~~~-~sy~~e~~ve~~i------~ 84 (201)
T PHA00619 19 DLQTIWVTELSRC-------LRRSWLMRKNGGVKLALEEAMKMHIGSGLHMRLQRILKK-HGFETECRVERKT------A 84 (201)
T ss_pred CCCeEEeeehhcC-------ccHHHHHHhccccccccccchHHHhhHHHHHHHHHHHhh-cCceeEEEEEEec------c
Confidence 4567888886644 345788777432 2 122346779998765444444442 233322111 111 1
Q ss_pred CCc-cccCCCCcccccccCCCCCceEEeeccCcCCcccccCCCCCCCcccHHHHHHHhhhhcCCceeEEEEeCCCceEEE
Q 019146 186 DDW-LAASPDGLVDRFVYDLPSGGVLEIKCPFFNGELTRASPWKRIPLYYIPQAQGLMEILDRDWMDFYVWTPNGSSLFR 264 (345)
Q Consensus 186 ~p~-lgASPDGlv~~~~~g~~~~gilEIKcP~~~~~~~~~~~~~~iP~~Y~~QvQ~QM~Vtg~~~~dfvv~~~~~~~i~r 264 (345)
.++ +.+..|.+.. + +..|+|||+..... ...+.-..|..|++.+|+..+...+.++.+..+ -.+..
T Consensus 85 ~~~~i~G~ID~i~~----~--~~~vvEiK~s~~~~------~~~~~~~~~~~QL~~Yl~lL~~~~G~l~~~~~~-rk~~e 151 (201)
T PHA00619 85 LGFEIVGKIDVYDK----E--ENTIYELKYTHMDD------LDKGRLNNYLRQLNYYIEMANAMAGYLIIVHAD-GRVEE 151 (201)
T ss_pred cceEEEEEEEEEeC----C--CcEEEEEEccCCCc------ccccchHHHHHHHHHHHHHHHhcCcEEEEEcCC-CceEE
Confidence 233 6678888742 1 45799999964321 011233578899999999987766644333333 23334
Q ss_pred Ee--CCHHHHHHHHHHHHHHHHHhccC
Q 019146 265 VY--RDLEYWDVMKMALSDFWWKHVQP 289 (345)
Q Consensus 265 V~--RDe~~i~~i~~~~~eFw~~~V~p 289 (345)
|. -|++...++.+.+.+.-.+...|
T Consensus 152 V~~~~~~~~l~~~i~~I~~ii~~~~~P 178 (201)
T PHA00619 152 IKRDWSETDLENRANAFGISVEENILP 178 (201)
T ss_pred eeccccHHHHHHHHHHHHHHHhcCcCC
Confidence 43 44444444444333333333333
No 9
>PF13366 PDDEXK_3: PD-(D/E)XK nuclease superfamily
Probab=75.94 E-value=3.4 Score=34.84 Aligned_cols=47 Identities=13% Similarity=-0.017 Sum_probs=38.3
Q ss_pred CCCCcccccccCCCCCceEEeeccCcCCcccccCCCCCCCcccHHHHHHHhhhhcCCceeEEEEeC
Q 019146 192 SPDGLVDRFVYDLPSGGVLEIKCPFFNGELTRASPWKRIPLYYIPQAQGLMEILDRDWMDFYVWTP 257 (345)
Q Consensus 192 SPDGlv~~~~~g~~~~gilEIKcP~~~~~~~~~~~~~~iP~~Y~~QvQ~QM~Vtg~~~~dfvv~~~ 257 (345)
-+|-++. +..|+|+|+--. +.+.+.+|+..+|-.+|.+.+.++-+..
T Consensus 62 r~DllV~-------~~vIvElKav~~------------l~~~h~aQll~YLk~~~~~lGlLiNF~~ 108 (118)
T PF13366_consen 62 RADLLVE-------NKVIVELKAVEE------------LNPVHEAQLLNYLKATGLPLGLLINFGV 108 (118)
T ss_pred EeeEEEc-------CeEEEEEeeHhh------------cCHHHHHHHHHHHHHhCCCEEEEEecCC
Confidence 5777775 678999999532 4567899999999999999998887755
No 10
>COG1468 CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense mechanisms]
Probab=65.21 E-value=1.1e+02 Score=27.80 Aligned_cols=140 Identities=19% Similarity=0.140 Sum_probs=72.6
Q ss_pred cCCcccchHHHhhcCCCCChHHHHHHHhcCCCCCCchHHHHHHHHhhHHHHHHHHHHh--CCeeeeeceEeeccCCCCCC
Q 019146 110 KHKLTASTFAGAIGFWPRRRVQLWLEKIGAIEPFLGNLATCWSNIKEEDALERYKLIT--GNTVYFTEFQVYRDKSRDDD 187 (345)
Q Consensus 110 ~~rITAS~~~~ilG~~~~s~~~L~~eKiG~~~~~~~n~am~~G~~~E~~A~~~ye~~~--g~~V~~~G~~i~~~~~~~~p 187 (345)
...+++|++...+-+ +..+|..+.|..... ++++.-|......+....+... ...|.-.| .
T Consensus 13 ~~~i~~~~v~~y~~C----prk~w~~~~~~~~~~--~~~~~~~~~l~~~i~~~~~~~~~~~~~v~l~~-----------~ 75 (190)
T COG1468 13 SMRITGSDVNEYLYC----PRKLWLFSRGGPEES--PEVYSEGVELGKLIHEKLEKFLRDEKEVELEG-----------E 75 (190)
T ss_pred ceeecHHHHHHHHhc----CHHHHHHHhcCcccc--chhcchhhhhhHHHHHHHHHHhcccccceecc-----------e
Confidence 356777777776655 567899888654332 2344444443333433332211 11111111 1
Q ss_pred ccccCCCCcccccccCC-CCCceEEeeccCcCCcccccCCCCCCCcccHHHHHHHhhhhcCCcee---EEEEeCCCceEE
Q 019146 188 WLAASPDGLVDRFVYDL-PSGGVLEIKCPFFNGELTRASPWKRIPLYYIPQAQGLMEILDRDWMD---FYVWTPNGSSLF 263 (345)
Q Consensus 188 ~lgASPDGlv~~~~~g~-~~~gilEIKcP~~~~~~~~~~~~~~iP~~Y~~QvQ~QM~Vtg~~~~d---fvv~~~~~~~i~ 263 (345)
++ .-|++.... +- ..+.++|||.-.... ..| +..|++.+|++.....+. =+.+-+.....+
T Consensus 76 ~i--~~d~lk~~~--~~~~~~~~vEiK~~~~~~---------~~~--~~~Ql~~ylyl~e~~g~~v~~g~i~Y~~~~k~~ 140 (190)
T COG1468 76 WI--KIDFLKGRM--DLEVKDVVVEIKKSKKME---------KAP--HKLQLAYYLYLEEKLGIAVAKGYIYYPKLKKRV 140 (190)
T ss_pred ee--eeeeecccc--eeeccceeEEEecCcCcc---------cch--HHHHHHHHHHHHHhhCceeeeEEEEecccCcEE
Confidence 12 445544310 00 023479999864321 123 788999999998632221 123334444778
Q ss_pred EEeCCHHHHHHHHHHHHH
Q 019146 264 RVYRDLEYWDVMKMALSD 281 (345)
Q Consensus 264 rV~RDe~~i~~i~~~~~e 281 (345)
.|+-|++..+.+.+.+.+
T Consensus 141 ~Vei~~~~~e~v~~~~~e 158 (190)
T COG1468 141 EVELTEELREEVERVLKE 158 (190)
T ss_pred EEEeCHHHHHHHHHHHHH
Confidence 888888776666555544
No 11
>PHA01622 CRISPR-associated Cas4-like protein
Probab=60.79 E-value=1.4e+02 Score=27.40 Aligned_cols=132 Identities=12% Similarity=0.063 Sum_probs=67.3
Q ss_pred hHHHHHHHhcCCCC-CCchHHHHHHHHhhHHHHHHHHHHhCCeeeeeceEeeccCCCCCCccccCCCCcccccccCCCCC
Q 019146 129 RVQLWLEKIGAIEP-FLGNLATCWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSG 207 (345)
Q Consensus 129 ~~~L~~eKiG~~~~-~~~n~am~~G~~~E~~A~~~ye~~~g~~V~~~G~~i~~~~~~~~p~lgASPDGlv~~~~~g~~~~ 207 (345)
+.++|+ -.+...+ ...++.+.-|...-...-+......+... +..+.+. . +.-.+.+..|.+.. .
T Consensus 29 ~rk~wl-~~~i~~e~~~~~~~~~~G~~ihe~~~~~~~~~~~~e~-Ekei~~~---i-~~i~i~GkID~l~~--------~ 94 (204)
T PHA01622 29 YRKSYL-ARNIEFERGINEIYLDLGEQYHERIEQYFKEKLNCQT-EVEIKDE---I-EGIKISGRIDIVCN--------N 94 (204)
T ss_pred ccHHHH-hcccccccccCchHHHHHHHHHHHHHHHHHHHhCcee-EEEEEEE---E-CCEEEEEEEEEEeC--------C
Confidence 456788 3343222 22378899998765444333333322221 1111110 0 11234556776652 2
Q ss_pred ceEEeeccCcCCcccccCCCCCCCcccHHHHHHHhhhhcC---Cc-eeEEEEeCC-CceEEEEeCCHHHHHHHHHHHHHH
Q 019146 208 GVLEIKCPFFNGELTRASPWKRIPLYYIPQAQGLMEILDR---DW-MDFYVWTPN-GSSLFRVYRDLEYWDVMKMALSDF 282 (345)
Q Consensus 208 gilEIKcP~~~~~~~~~~~~~~iP~~Y~~QvQ~QM~Vtg~---~~-~dfvv~~~~-~~~i~rV~RDe~~i~~i~~~~~eF 282 (345)
.++|+|+.... -..+-..|..||+.|+++... +. +-+.++..+ ...+..+.-|++.++.++..+.+.
T Consensus 95 ~iiEvKsS~k~--------~~~~~~~~~~Qla~Yl~~Lk~~Gi~v~g~~l~~i~~k~~~v~~~~~~e~~le~~i~~I~~~ 166 (204)
T PHA01622 95 DLLEIKTISYN--------YFQVKEYHLYQVALYYHILKKQNYQINNVYIVYLNRNTREVKQFKIDEKVLETYYQKVIEW 166 (204)
T ss_pred ceEEEEecCCC--------CCcccHhHHHHHHHHHHHHHHcCCCCCceEEEEecCCCCceeEEEcChHHHHHHHHHHHHH
Confidence 38999996421 012335789999999988742 21 223344333 234556666766555554444443
No 12
>PF13588 HSDR_N_2: Type I restriction enzyme R protein N terminus (HSDR_N); PDB: 3H1T_A.
Probab=48.74 E-value=15 Score=29.77 Aligned_cols=65 Identities=17% Similarity=0.094 Sum_probs=35.6
Q ss_pred CCCCcccccccCCCCCceEEeeccCcCCcccccCCCCCCCcccHHHHHHHhhhhcCCceeEEEEe-CCCceEEEEeCCHH
Q 019146 192 SPDGLVDRFVYDLPSGGVLEIKCPFFNGELTRASPWKRIPLYYIPQAQGLMEILDRDWMDFYVWT-PNGSSLFRVYRDLE 270 (345)
Q Consensus 192 SPDGlv~~~~~g~~~~gilEIKcP~~~~~~~~~~~~~~iP~~Y~~QvQ~QM~Vtg~~~~dfvv~~-~~~~~i~rV~RDe~ 270 (345)
-+|-++.....+.....++|+|.|... +......|+-.+|..+++++ +++| +....++.+..++.
T Consensus 38 r~Divv~~~~~~~~p~~iIE~K~~~~~-----------~~~~~~~Q~~~Y~~~~~~~~---~i~tNG~~~~~~~~~~~~~ 103 (112)
T PF13588_consen 38 RADIVVFRDDKDNKPLIIIECKAPSVS-----------LSEKAVEQLKSYARALGAPY---GILTNGKEFRFYDVDEGKK 103 (112)
T ss_dssp EEEEEEEEET--TEEEEEEEE--TTS------------GGG-SHHHHHHHHHHHT-SE---EEEE-SS-EEEEETTT--E
T ss_pred eeEEEEEeCCCCCCeEEEEEECCCCCC-----------ccHHHHHHHHHHHHhCCCCE---EEEECCCeEEEEEEeCCCc
Confidence 466666521100124567999998643 12357889999999988776 4554 45677777766654
No 13
>PF15649 Tox-REase-7: Restriction endonuclease fold toxin 7
Probab=39.58 E-value=1.2e+02 Score=24.18 Aligned_cols=69 Identities=16% Similarity=0.153 Sum_probs=42.6
Q ss_pred HHHhhHHHHHHHHHHhCCeeeeeceEeeccCCCCCCccccCCCCcccccccCCCCCceEEeeccCcCCcccccCCCCCCC
Q 019146 152 SNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFFNGELTRASPWKRIP 231 (345)
Q Consensus 152 G~~~E~~A~~~ye~~~g~~V~~~G~~i~~~~~~~~p~lgASPDGlv~~~~~g~~~~gilEIKcP~~~~~~~~~~~~~~iP 231 (345)
|...|..|...+. ..+..+. + ..+..+.-.--||++.. ....++|||..-. +
T Consensus 2 G~~~E~~a~~~~~-~~~~~i~-----~---~~~~~~~~~rIPD~~~~------~~~~l~EVKNV~~------------~- 53 (87)
T PF15649_consen 2 GREGERRAGIDLN-KNKKNIT-----V---NNGNGGQGNRIPDGLDK------NNGQLVEVKNVKY------------Q- 53 (87)
T ss_pred hhhHHHHHhhhhc-CCceEEE-----e---ccCcccCCcCCCccccc------CCCcEEEEechhh------------c-
Confidence 6777888877665 1111121 1 02222334457999874 1568999999753 2
Q ss_pred cccHHHHHHHhhhh---cCCc
Q 019146 232 LYYIPQAQGLMEIL---DRDW 249 (345)
Q Consensus 232 ~~Y~~QvQ~QM~Vt---g~~~ 249 (345)
.|=.|+..|+..+ |.+.
T Consensus 54 -s~t~Qlr~~~~~A~~~G~~~ 73 (87)
T PF15649_consen 54 -SLTKQLRDYVKYAKENGYRF 73 (87)
T ss_pred -cchHHHHHHHHHHHHcCCcE
Confidence 4567999999997 5554
No 14
>PRK14676 hypothetical protein; Provisional
Probab=39.37 E-value=49 Score=27.66 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=24.7
Q ss_pred chHHHHHHHHhhHHHHHHHHHHhCCeeeeeceE
Q 019146 145 GNLATCWSNIKEEDALERYKLITGNTVYFTEFQ 177 (345)
Q Consensus 145 ~n~am~~G~~~E~~A~~~ye~~~g~~V~~~G~~ 177 (345)
+..+...|..-|..|.+.++ ..|..|.+.++-
T Consensus 3 ~~~~~~~G~~gE~~A~~~L~-~~Gy~Il~rN~r 34 (117)
T PRK14676 3 GEVSYYAGQTAEEAVARIYD-RSGRPVAARRWR 34 (117)
T ss_pred chHHHHHHHHHHHHHHHHHH-HCCCEEeeeecC
Confidence 44567889999999988776 578888877653
No 15
>PHA02943 hypothetical protein; Provisional
Probab=32.11 E-value=1.4e+02 Score=26.42 Aligned_cols=48 Identities=13% Similarity=0.174 Sum_probs=38.6
Q ss_pred HHHHHHHhhhhcCCceeEEEEeCCCceEEEEeCCHHHHHHHHHHHHHHHH
Q 019146 235 IPQAQGLMEILDRDWMDFYVWTPNGSSLFRVYRDLEYWDVMKMALSDFWW 284 (345)
Q Consensus 235 ~~QvQ~QM~Vtg~~~~dfvv~~~~~~~i~rV~RDe~~i~~i~~~~~eFw~ 284 (345)
+.|+|+.+++..++.. |--...|..-++.-.|+++...+.+..+++|.
T Consensus 38 ~~qa~~~LyvLErEG~--VkrV~~G~~tyw~l~~day~~~v~~~~Relwr 85 (165)
T PHA02943 38 HSMARNALYQLAKEGM--VLKVEIGRAAIWCLDEDAYTNLVFEIKRELWR 85 (165)
T ss_pred HHHHHHHHHHHHHcCc--eEEEeecceEEEEEChHHHHHHHHHHHHHHHH
Confidence 4599999999999985 22244687778888889998888899999995
No 16
>PRK14689 hypothetical protein; Provisional
Probab=30.68 E-value=80 Score=26.80 Aligned_cols=54 Identities=15% Similarity=0.038 Sum_probs=33.2
Q ss_pred HHHHHHhhHHHHHHHHHHhCCeeeeeceEeeccCCCCCCccccCCCCcccccccCCCCCceEEeeccCc
Q 019146 149 TCWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFF 217 (345)
Q Consensus 149 m~~G~~~E~~A~~~ye~~~g~~V~~~G~~i~~~~~~~~p~lgASPDGlv~~~~~g~~~~gilEIKcP~~ 217 (345)
.+-|..-|..|.++++ ..|..|...++-.. . +-.|=+.. .| ..-..+|||+-.+
T Consensus 8 ~~~G~~gE~~Aa~~L~-~~Gy~Il~rN~r~~---~-------GEIDIIa~---~~-~~lVFVEVKtR~~ 61 (124)
T PRK14689 8 QALGAWAEERVLRLLQ-RRGWRLLDRNWSCR---W-------GELDLVLE---KQ-QRLLVVEVKGRRR 61 (124)
T ss_pred HHHHHHHHHHHHHHHH-HCCCEEEEEecCCC---C-------CcccEEee---eC-CEEEEEEEEECCC
Confidence 3579999999987766 47888887765321 2 34443332 11 1233589999643
No 17
>PRK14679 hypothetical protein; Provisional
Probab=25.59 E-value=1.1e+02 Score=25.98 Aligned_cols=57 Identities=16% Similarity=0.033 Sum_probs=36.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHhCCeeeeeceEeeccCCCCCCccccCCCCcccccccCCCCCceEEeeccCcC
Q 019146 147 LATCWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFFN 218 (345)
Q Consensus 147 ~am~~G~~~E~~A~~~ye~~~g~~V~~~G~~i~~~~~~~~p~lgASPDGlv~~~~~g~~~~gilEIKcP~~~ 218 (345)
.+-..|..-|..|.++++ ..|..|...++-. + .+-.|=+.. .| ..-..+|||+-.+.
T Consensus 13 ~~~~~G~~gE~~A~~~L~-~~Gy~Il~rN~r~--------~--~GEIDiIa~---~~-~~lVFVEVKtR~~~ 69 (128)
T PRK14679 13 ATHGRGLSAEGLALLALM-LKGYRPLARRFAA--------A--GGEIDLIVR---RG-RTIAFVEVKARATL 69 (128)
T ss_pred HHHHHHHHHHHHHHHHHH-HCCCEEEeeeccC--------C--CCeEEEEEE---eC-CEEEEEEEEecCCC
Confidence 456889999999988776 5788888776532 1 344554443 11 12345899996543
No 18
>PRK14675 hypothetical protein; Provisional
Probab=25.25 E-value=1e+02 Score=25.97 Aligned_cols=53 Identities=15% Similarity=0.038 Sum_probs=33.7
Q ss_pred HHHHHHhhHHHHHHHHHHhCCeeeeeceEeeccCCCCCCccccCCCCcccccccCCCCCceEEeeccC
Q 019146 149 TCWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPF 216 (345)
Q Consensus 149 m~~G~~~E~~A~~~ye~~~g~~V~~~G~~i~~~~~~~~p~lgASPDGlv~~~~~g~~~~gilEIKcP~ 216 (345)
-.-|..-|..|...++ ..|..|...++-.. .+-.|=+.. .+ ..-.++|||+-.
T Consensus 8 ~~~G~~gE~~A~~~L~-~~G~~il~rn~r~~----------~GEIDlIa~---d~-~~lvFVEVK~R~ 60 (125)
T PRK14675 8 KSLGEIGESIAVTYLK-GLRYKIVERNFRCR----------CGEIDIIAR---DG-KTLVFVEVKTRK 60 (125)
T ss_pred HHHhHHHHHHHHHHHH-HCCCEEEEEEEeCC----------CCeEEEEEE---eC-CEEEEEEEEecc
Confidence 3468888999987766 47888888776431 344444443 11 123468999954
No 19
>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function.
Probab=25.23 E-value=84 Score=22.77 Aligned_cols=34 Identities=12% Similarity=0.283 Sum_probs=27.2
Q ss_pred CCCCCCCchHHHHHHHHHHhc---cCceEEecccccc
Q 019146 311 PTPRHELWSYLVYDSKRIIDN---SSLLVREIGGKLQ 344 (345)
Q Consensus 311 p~~~h~~~~~~~~~~~~la~~---a~~~~~~~~g~~~ 344 (345)
|..+|+.=.+.|..++.+|.+ +.|+.+.-.|.|+
T Consensus 21 a~~~~~Tk~eAi~~Ar~~a~~~~~~el~Ih~~dG~i~ 57 (62)
T PF09954_consen 21 ASKTFDTKAEAIEAARELAKNQGGGELIIHGRDGKIR 57 (62)
T ss_pred cccccCcHHHHHHHHHHHHHhCCCcEEEEECCCCeEE
Confidence 345566668999999999955 7889998888875
No 20
>PRK14684 hypothetical protein; Provisional
Probab=24.94 E-value=1.3e+02 Score=25.34 Aligned_cols=54 Identities=11% Similarity=0.019 Sum_probs=33.9
Q ss_pred HHHHHHHhhHHHHHHHHHHhCCeeeeeceEeeccCCCCCCccccCCCCcccccccCCCCCceEEeeccC
Q 019146 148 ATCWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPF 216 (345)
Q Consensus 148 am~~G~~~E~~A~~~ye~~~g~~V~~~G~~i~~~~~~~~p~lgASPDGlv~~~~~g~~~~gilEIKcP~ 216 (345)
.-+-|..-|..|...++ ..|..|...++-. -.+-.|=+.. .| ..-..+|||+-.
T Consensus 5 ~~~~G~~gE~~A~~~L~-~~Gy~Il~rN~r~----------~~GEIDiIa~---~~-~~lvFVEVK~R~ 58 (120)
T PRK14684 5 TQKIGFNAEKTACRYLQ-KQGLSFITKNFRY----------KQGEIDLIMS---DQ-SMLVFIEVRYRR 58 (120)
T ss_pred HHHHhHHHHHHHHHHHH-HCCCEEEEEEecC----------CCCeEEEEEE---eC-CEEEEEEEeEcC
Confidence 33579999999987666 5788888776532 1344554443 11 123458999954
No 21
>PRK14673 hypothetical protein; Provisional
Probab=24.69 E-value=1.2e+02 Score=26.19 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=33.5
Q ss_pred HHHHHHhhHHHHHHHHHHhCCeeeeeceEeeccCCCCCCccccCCCCcccccccCCCCCceEEeeccC
Q 019146 149 TCWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPF 216 (345)
Q Consensus 149 m~~G~~~E~~A~~~ye~~~g~~V~~~G~~i~~~~~~~~p~lgASPDGlv~~~~~g~~~~gilEIKcP~ 216 (345)
..-|..-|..|..+++ ..|..|.+-++-.. ..+.++++--.|+ .-..||||+-.
T Consensus 26 ~~~G~~gE~~A~~~L~-~~Gy~IL~rN~r~~---~GEIDLIa~~~~~----------~lVFVEVKtR~ 79 (137)
T PRK14673 26 RAVGAAFEDRALAFLQ-RAGLALVARNYRCR---GGEIDLVMRERDG----------TLVFVEVRARA 79 (137)
T ss_pred HHHHHHHHHHHHHHHH-HCCCEEeEeEecCC---CCccCHHHccCCc----------EEEEEEEEeCC
Confidence 3469999999987765 57888888776431 2233444333332 12358999954
No 22
>PRK14686 hypothetical protein; Provisional
Probab=24.27 E-value=1.3e+02 Score=25.09 Aligned_cols=54 Identities=17% Similarity=0.055 Sum_probs=33.7
Q ss_pred HHHHHHhhHHHHHHHHHHhCCeeeeeceEeeccCCCCCCccccCCCCcccccccCCCCCceEEeeccCc
Q 019146 149 TCWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFF 217 (345)
Q Consensus 149 m~~G~~~E~~A~~~ye~~~g~~V~~~G~~i~~~~~~~~p~lgASPDGlv~~~~~g~~~~gilEIKcP~~ 217 (345)
..-|..-|..|...++ ..|..|.+.++-.. .+-.|=+.. .| ..-..+|||+-.+
T Consensus 5 ~~~G~~gE~~A~~~L~-~~Gy~il~rN~r~~----------~GEIDlIa~---~~-~~lvFVEVKtR~~ 58 (119)
T PRK14686 5 NELGKEGEDLAVEFLI-KKGYTILERNYRFQ----------KAEIDIIAQ---KG-NILVIVEVKTRSS 58 (119)
T ss_pred HHHHHHHHHHHHHHHH-HCCCEEEEEEecCC----------CCcEEEEEC---cC-CEEEEEEEEecCC
Confidence 3468999999987766 57888888776431 344444433 11 1234589999543
No 23
>PRK14674 hypothetical protein; Provisional
Probab=24.18 E-value=1.5e+02 Score=25.45 Aligned_cols=53 Identities=15% Similarity=0.040 Sum_probs=33.4
Q ss_pred HHHHHHhhHHHHHHHHHHhCCeeeeeceEeeccCCCCCCccccCCCCcccccccCCCCCceEEeeccC
Q 019146 149 TCWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPF 216 (345)
Q Consensus 149 m~~G~~~E~~A~~~ye~~~g~~V~~~G~~i~~~~~~~~p~lgASPDGlv~~~~~g~~~~gilEIKcP~ 216 (345)
-.-|..-|..|.+.++ ..|..|.+.++-.. .+-.|=+.. .| ..-..+|||+-.
T Consensus 5 ~~~G~~gE~~A~~~L~-~~Gy~Il~rN~r~~----------~GEIDiIa~---~~-~~LVFVEVK~R~ 57 (133)
T PRK14674 5 QQLGQWAEQTALKLLK-EQNYEWVASNYHSR----------RGEVDLIVK---RG-NELIFVEVKARG 57 (133)
T ss_pred hHhhHHHHHHHHHHHH-HCCCEEeEEeeecC----------CCCEeEEEE---eC-CEEEEEEEEecC
Confidence 4568889999987766 47888888776431 334444433 11 123358999854
No 24
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=23.30 E-value=42 Score=24.14 Aligned_cols=11 Identities=55% Similarity=0.736 Sum_probs=8.8
Q ss_pred ceEEeeccCcC
Q 019146 208 GVLEIKCPFFN 218 (345)
Q Consensus 208 gilEIKcP~~~ 218 (345)
.-||||||...
T Consensus 21 ~~leIKCpRC~ 31 (51)
T PF10122_consen 21 IELEIKCPRCK 31 (51)
T ss_pred cEEEEECCCCC
Confidence 34899999865
No 25
>PRK14683 hypothetical protein; Provisional
Probab=23.22 E-value=1.3e+02 Score=25.36 Aligned_cols=54 Identities=9% Similarity=-0.028 Sum_probs=34.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHhCCeeeeeceEeeccCCCCCCccccCCCCcccccccCCCCCceEEeecc
Q 019146 147 LATCWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCP 215 (345)
Q Consensus 147 ~am~~G~~~E~~A~~~ye~~~g~~V~~~G~~i~~~~~~~~p~lgASPDGlv~~~~~g~~~~gilEIKcP 215 (345)
.+-.-|..-|..|.+.++ ..|..|.+.++-. =.+-.|=+.. .| ..-..+|||+-
T Consensus 11 ~~~~lG~~gE~~A~~~L~-~~Gy~Il~rN~r~----------~~GEIDIIa~---~~-~~lVFVEVKtR 64 (122)
T PRK14683 11 AYNTLGYLGEVLIILFLK-CKLYHIIKHRYRC----------PLGEIDIIAH---KN-KQLVFIEVKTS 64 (122)
T ss_pred HHHHHHHHHHHHHHHHHH-HCCCEEEeeecCC----------CCCcEEEEEE---eC-CEEEEEEEeec
Confidence 455779999999987766 4788888776532 1444554443 11 12345899995
No 26
>PRK14681 hypothetical protein; Provisional
Probab=23.12 E-value=1.7e+02 Score=25.94 Aligned_cols=55 Identities=16% Similarity=0.090 Sum_probs=34.1
Q ss_pred HHHHHHHhhHHHHHHHHHHhCCeeeeeceEeeccCCCCCCccccCCCCcccccccCCCCCceEEeeccC
Q 019146 148 ATCWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPF 216 (345)
Q Consensus 148 am~~G~~~E~~A~~~ye~~~g~~V~~~G~~i~~~~~~~~p~lgASPDGlv~~~~~g~~~~gilEIKcP~ 216 (345)
.-..|..-|..|..+++ ..|..|.+-++-.. ..+.+.++--.|+ .-..+|||+-.
T Consensus 42 ~~~~G~~gE~~Aa~~L~-~~Gy~IL~rN~R~~---~GEIDIIa~d~~~----------~LVFVEVKtR~ 96 (158)
T PRK14681 42 PKQIGALGEQYAAAWLE-EHGWTTLSRNWHCR---YGELDIVALNPEY----------TIVFVEVKTRR 96 (158)
T ss_pred hHHHHHHHHHHHHHHHH-HCCCEEEEEEEeCC---CCcEEEEEEcCCc----------eEEEEEEEecc
Confidence 34569999999988654 57898888776431 2333444332221 23458999954
No 27
>TIGR00252 conserved hypothetical protein TIGR00252. the scores for Mycobacterium tuberculosis and Treponema pallidum are low considering the alignment
Probab=23.00 E-value=1.4e+02 Score=25.00 Aligned_cols=52 Identities=10% Similarity=0.031 Sum_probs=32.7
Q ss_pred HHHHHhhHHHHHHHHHHhCCeeeeeceEeeccCCCCCCccccCCCCcccccccCCCCCceEEeeccC
Q 019146 150 CWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPF 216 (345)
Q Consensus 150 ~~G~~~E~~A~~~ye~~~g~~V~~~G~~i~~~~~~~~p~lgASPDGlv~~~~~g~~~~gilEIKcP~ 216 (345)
.-|..-|..|.+.++ ..|..|.+.++-. + .+-.|=+.. .| ..-..+|||+-.
T Consensus 7 ~~G~~gE~~A~~~L~-~~Gy~Il~rN~r~--------~--~GEIDiIa~---~~-~~lvFVEVK~R~ 58 (119)
T TIGR00252 7 QLGQAGESQARAWLE-QKGLKFIAANWNS--------P--WGEIDLIMH---DT-KTIAFVEVRTRS 58 (119)
T ss_pred HHhHHHHHHHHHHHH-HCCCEEeEEEecC--------C--CCcEEEEEe---eC-CEEEEEEEEecC
Confidence 468899999987766 5788888877542 1 344454443 11 123458999954
No 28
>PRK14687 hypothetical protein; Provisional
Probab=22.93 E-value=2.3e+02 Score=25.52 Aligned_cols=31 Identities=13% Similarity=-0.077 Sum_probs=23.7
Q ss_pred chHHHHHHHHhhHHHHHHHHHHhCCeeeeece
Q 019146 145 GNLATCWSNIKEEDALERYKLITGNTVYFTEF 176 (345)
Q Consensus 145 ~n~am~~G~~~E~~A~~~ye~~~g~~V~~~G~ 176 (345)
++.....|..-|..|.++++. .|..|...++
T Consensus 26 ~~~~~~lGr~gE~~Aa~~L~~-kGy~IL~RN~ 56 (173)
T PRK14687 26 TSPKQRQGGGFEQLACEFLQE-QGLILIARNW 56 (173)
T ss_pred CCHHHHHhHHHHHHHHHHHHH-CCCEEeeecc
Confidence 455568899999999887764 6888877665
No 29
>PRK14685 hypothetical protein; Provisional
Probab=22.82 E-value=1.4e+02 Score=26.99 Aligned_cols=56 Identities=13% Similarity=0.007 Sum_probs=35.0
Q ss_pred hHHHHHHHHhhHHHHHHHHHHhCCeeeeeceEeeccCCCCCCccccCCCCcccccccCCCCCceEEeeccC
Q 019146 146 NLATCWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPF 216 (345)
Q Consensus 146 n~am~~G~~~E~~A~~~ye~~~g~~V~~~G~~i~~~~~~~~p~lgASPDGlv~~~~~g~~~~gilEIKcP~ 216 (345)
...-..|..-|..|..+++ ..|..|...++-. -.+-.|=+.. .| ..-..||||+-.
T Consensus 39 ~~~~~~G~~gE~~Aa~yL~-~~Gy~IL~RN~R~----------~~GEIDIIA~---dg-~~LVFVEVKtR~ 94 (177)
T PRK14685 39 SPTQRCGQAYESAALRWLA-RQGLRPLARNLRC----------RAGEIDLAMR---DG-EVLVLVEVRARA 94 (177)
T ss_pred chHHHHhHHHHHHHHHHHH-HCCCEEeEeeecC----------CCCcEEEEEe---cC-CEEEEEEEeECC
Confidence 3456789999999987766 4688888776532 1344454433 11 123348999954
No 30
>PRK14678 hypothetical protein; Provisional
Probab=22.39 E-value=1.7e+02 Score=24.55 Aligned_cols=55 Identities=13% Similarity=0.023 Sum_probs=35.0
Q ss_pred HHHHHHHhhHHHHHHHHHHhCCeeeeeceEeeccCCCCCCccccCCCCcccccccCCCCCceEEeeccCc
Q 019146 148 ATCWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFF 217 (345)
Q Consensus 148 am~~G~~~E~~A~~~ye~~~g~~V~~~G~~i~~~~~~~~p~lgASPDGlv~~~~~g~~~~gilEIKcP~~ 217 (345)
....|..-|..|.+.++ ..|..|.+.++-. + .+-.|=+.. .| ..-..+|||+-.+
T Consensus 5 ~~~~G~~gE~~A~~~L~-~~Gy~Il~rN~r~--------~--~GEIDiIa~---~~-~~lvFVEVKtR~~ 59 (120)
T PRK14678 5 KRRLGDWGEQVAAAYLE-RCGYTIIARNWRC--------R--AGEIDIVAR---EG-DQLVFVEVRTRRD 59 (120)
T ss_pred HHHHHHHHHHHHHHHHH-HCCCEEeeeeecC--------C--CCCEeeeEE---eC-CEEEEEEEEECCC
Confidence 44579999999977666 5788888777532 1 355555443 11 1234589998644
No 31
>PRK14688 hypothetical protein; Provisional
Probab=21.21 E-value=1.5e+02 Score=24.90 Aligned_cols=53 Identities=15% Similarity=0.011 Sum_probs=33.3
Q ss_pred HHHHHHhhHHHHHHHHHHhCCeeeeeceEeeccCCCCCCccccCCCCcccccccCCCCCceEEeeccC
Q 019146 149 TCWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPF 216 (345)
Q Consensus 149 m~~G~~~E~~A~~~ye~~~g~~V~~~G~~i~~~~~~~~p~lgASPDGlv~~~~~g~~~~gilEIKcP~ 216 (345)
..-|..-|..|...++ ..|..|...++-. + .+-.|=+.. .| ..-..+|||+-.
T Consensus 6 ~~~G~~gE~~A~~~L~-~~Gy~Il~rN~r~--------~--~GEIDiIa~---~~-~~lVFVEVK~R~ 58 (121)
T PRK14688 6 KETGEFGEKLAAEYLK-GMGYSIIQTNCRL--------P--EGEIDIVGQ---DG-EYLVFIEVRTKR 58 (121)
T ss_pred HHHHHHHHHHHHHHHH-HCCCEEEEEEeeC--------C--CCcEeEEEe---eC-CEEEEEEEEecC
Confidence 3469999999977665 5788888877643 1 344554443 11 123458999843
No 32
>PRK12497 hypothetical protein; Reviewed
Probab=21.14 E-value=1.3e+02 Score=24.99 Aligned_cols=54 Identities=13% Similarity=0.022 Sum_probs=35.1
Q ss_pred HHHHHHhhHHHHHHHHHHhCCeeeeeceEeeccCCCCCCccccCCCCcccccccCCCCCceEEeeccCc
Q 019146 149 TCWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFF 217 (345)
Q Consensus 149 m~~G~~~E~~A~~~ye~~~g~~V~~~G~~i~~~~~~~~p~lgASPDGlv~~~~~g~~~~gilEIKcP~~ 217 (345)
..-|..-|..|...++ ..|..|.+.++-. + .+-.|=+.. .| ..-..+|||+-.+
T Consensus 6 ~~~G~~gE~~A~~~L~-~~Gy~Il~rN~r~--------~--~GEIDiIa~---~~-~~lvFVEVK~R~~ 59 (119)
T PRK12497 6 RQLGAAGEDLAARYLE-SKGLRILARNFRC--------R--FGEIDLIAR---DG-DTLVFVEVKTRRS 59 (119)
T ss_pred HHHHHHHHHHHHHHHH-HCCCEEEcceecC--------C--CCcEeeeEE---eC-CEEEEEEEEeccC
Confidence 3569999999988776 5788888776532 1 455565543 11 1234589999643
No 33
>PRK14680 hypothetical protein; Provisional
Probab=20.10 E-value=1.3e+02 Score=25.85 Aligned_cols=53 Identities=13% Similarity=0.087 Sum_probs=33.2
Q ss_pred HHHHHhhHHHHHHHHHHhCCeeeeeceEeeccCCCCCCccccCCCCcccccccCCCCCceEEeeccCc
Q 019146 150 CWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFF 217 (345)
Q Consensus 150 ~~G~~~E~~A~~~ye~~~g~~V~~~G~~i~~~~~~~~p~lgASPDGlv~~~~~g~~~~gilEIKcP~~ 217 (345)
.-|..-|..|.+.++ ..|..|.+.++-. + .+-.|=+.. .| ..-..+|||+-.+
T Consensus 7 ~~G~~gE~~A~~~L~-~~Gy~Il~rN~r~--------~--~GEIDiIa~---~~-~~lVFVEVKtR~~ 59 (134)
T PRK14680 7 AIGQHGEDAAAALLQ-RTGHRILARNWRH--------G--GLELDIVCE---DG-DTIVFVEVKTRAA 59 (134)
T ss_pred HHHHHHHHHHHHHHH-HCCCEEEEeecCC--------C--CCeEEEEEE---eC-CEEEEEEEEecCC
Confidence 468889999987765 5788888776532 1 234554443 11 1234589999543
Done!