Query 019146
Match_columns 345
No_of_seqs 209 out of 791
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 11:37:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019146.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019146hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3syy_A Exonuclease; digest dou 100.0 2.8E-46 9.7E-51 342.7 13.6 175 98-284 1-189 (216)
2 3sm4_A Exonuclease; homologous 100.0 1.6E-45 5.4E-50 340.6 16.6 179 94-284 16-211 (229)
3 3k93_A Phage related exonuclea 100.0 5.4E-29 1.8E-33 227.5 12.4 162 108-284 5-213 (223)
4 2w45_A Nuclease, alkaline exon 99.8 1.4E-21 4.9E-26 195.1 6.8 123 87-219 101-233 (470)
5 3fhd_A ORF 37; enase like PD-( 99.8 1.6E-19 5.4E-24 180.4 7.4 123 88-218 140-273 (508)
6 4ic1_A Uncharacterized protein 91.3 1.4 4.7E-05 38.9 10.2 129 129-272 37-172 (206)
7 2wcw_A HJC; type II restrictio 21.9 99 0.0034 25.4 4.4 55 150-217 6-60 (139)
8 3fov_A UPF0102 protein RPA0323 17.3 79 0.0027 26.0 2.8 57 146-217 17-73 (134)
9 1wmh_B Partitioning defective- 16.3 1.2E+02 0.004 23.1 3.3 68 206-275 3-72 (86)
10 2fcg_F Cationic, antibacterial 15.0 1.5E+02 0.0053 17.4 2.8 20 272-292 5-24 (26)
No 1
>3syy_A Exonuclease; digest double stranded DNA, strict 5-3 polarity, hydrolase; 1.90A {Laribacter hongkongensis} PDB: 3sz4_A* 3sz5_A
Probab=100.00 E-value=2.8e-46 Score=342.69 Aligned_cols=175 Identities=27% Similarity=0.327 Sum_probs=148.6
Q ss_pred ccCCCHHHHHHhcCCcccchHHHhh-----cCCCC-Ch--HHHHHHHh-cCCCCCCchHHHHHHHHhhHHHHHHHHHHhC
Q 019146 98 LQHWFKNWQKLRKHKLTASTFAGAI-----GFWPR-RR--VQLWLEKI-GAIEPFLGNLATCWSNIKEEDALERYKLITG 168 (345)
Q Consensus 98 ~qq~s~eW~~~R~~rITAS~~~~il-----G~~~~-s~--~~L~~eKi-G~~~~~~~n~am~~G~~~E~~A~~~ye~~~g 168 (345)
.+|||++|+++|+++||||++++++ |.+++ ++ .+||.||+ |..+++.+|++|+||+.+||.|++.|++.+|
T Consensus 1 ~~Q~s~eW~~~R~~~ItaS~~~~i~~~~~~G~~~~~~~~~~~L~~ek~tG~~~~~~~~~a~~~G~~lE~~a~~~~~~~~g 80 (216)
T 3syy_A 1 MEQRTEEWFAARLGKVTASRVADVMTKTKSGYAASRQNYMAELICQRLTGTQEIRFSNAAMQRGTELEPHARARYIIETG 80 (216)
T ss_dssp ----CCHHHHHHTTCEEGGGHHHHHCC-----CHHHHHHHHHHHHHHHHSSCCC---CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHcCCCCHHHHHHHHhcccCCCCchhhhHHHHHHHHHHcCCCCCccccHHHHHhHHhHHHHHHHHHHHHC
Confidence 4799999999999999999999999 77766 33 49999996 9887777899999999999999999999999
Q ss_pred CeeeeeceEeeccCCCCCCccccCCCCcccccccCCCCCceEEeeccCcCCcccccCCCCCCCcccHHHHHHHhhhhcCC
Q 019146 169 NTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFFNGELTRASPWKRIPLYYIPQAQGLMEILDRD 248 (345)
Q Consensus 169 ~~V~~~G~~i~~~~~~~~p~lgASPDGlv~~~~~g~~~~gilEIKcP~~~~~~~~~~~~~~iP~~Y~~QvQ~QM~Vtg~~ 248 (345)
..|.++|+++ ++++|||+|||||++. ++++||||||+...+... ...+++|.+||+|||+||+|+|++
T Consensus 81 ~~v~~~g~~~----~~~~~~l~ASpDG~v~-------~~~ilEiK~p~~~~~~~~-~~~~~ip~~Y~~QvQ~qm~Vtg~~ 148 (216)
T 3syy_A 81 EIVTEVGLID----HPTIAGFGASPDGLVG-------DTGLIEIKCPNTWTHIET-IKTGKPKPEYIKQMQTQMACTGRQ 148 (216)
T ss_dssp CCEECCCCEE----CSSSTTEEECCSEEET-------TTEEEEEECCCHHHHHHH-HHHCSCCHHHHHHHHHHHHHHTCS
T ss_pred CEeEEcceEE----CCCCccceeCCCEeec-------CCceEEEecCCccchHHH-HhCCCCCHHHHHHHHHHHHhcCCC
Confidence 9999999866 7789999999999986 478999999987543211 224689999999999999999999
Q ss_pred ceeEEEEeCC-----CceEEEEeCCHHHHHHHHHHHHHHHH
Q 019146 249 WMDFYVWTPN-----GSSLFRVYRDLEYWDVMKMALSDFWW 284 (345)
Q Consensus 249 ~~dfvv~~~~-----~~~i~rV~RDe~~i~~i~~~~~eFw~ 284 (345)
||||++|+++ .+.+++|+||+++|+.|++++.+||.
T Consensus 149 ~~~f~v~~~~~~~~~~~~~~rI~RD~~~i~~l~~~~~~Fw~ 189 (216)
T 3syy_A 149 WCDFVSYDDRLPDDMQYFCTRIERDDALIAEIETEVSAFLA 189 (216)
T ss_dssp EEEEEEECTTSCGGGSEEEEEEECCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCCCCceEEEEEECCHHHHHHHHHHHHHHHH
Confidence 9999999873 57899999999999999999999995
No 2
>3sm4_A Exonuclease; homologous recombination, DNA repair, recombineering, single annealing; 1.88A {Enterobacteria phage lambda} PDB: 3slp_A 1avq_A
Probab=100.00 E-value=1.6e-45 Score=340.62 Aligned_cols=179 Identities=23% Similarity=0.335 Sum_probs=158.0
Q ss_pred hhccccCCCHHHHHHhcCCcccchHHHhhcCCCC-Ch---------HHHHHHHh-cCCCCCCchHHHHHHHHhhHHHHHH
Q 019146 94 QSSSLQHWFKNWQKLRKHKLTASTFAGAIGFWPR-RR---------VQLWLEKI-GAIEPFLGNLATCWSNIKEEDALER 162 (345)
Q Consensus 94 ~~t~~qq~s~eW~~~R~~rITAS~~~~ilG~~~~-s~---------~~L~~eKi-G~~~~~~~n~am~~G~~~E~~A~~~ 162 (345)
+..+++|+|++|+++|+++||||++++++|.+++ ++ .+||.||+ |..++ .++.+|+||+.+||.|++.
T Consensus 16 ~i~~~~Q~s~eWl~~R~~~ItaS~~~~ilg~~~~~sp~~~~~~~y~~~L~~ek~~g~~~~-~~~~a~~~G~~~Ep~ar~~ 94 (229)
T 3sm4_A 16 DVRAVEQGDDAWHKLRLGVITASEVHNVIAKPRSGKKWPDMKMSYFHTLLAEVCTGVAPE-VNAKALAWGKQYENDARTL 94 (229)
T ss_dssp CTTCCCSSSHHHHHHTTTCEEGGGTHHHHCCCSSSSCCCHHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHH
T ss_pred eEEECCCCCHHHHHHHCCCccHhHHHHHHCCCCCCCccchhhHHHHHHHHHHHhcCCCCC-CChHHHHHHHHhHHHHHHH
Confidence 4557899999999999999999999999999998 77 69999997 77666 4689999999999999999
Q ss_pred HHHHhCCeeeeeceEeeccCCCCCCccccCCCCcccccccCCCCCceEEeeccCcCCcccccCC--CCCCCcccHHHHHH
Q 019146 163 YKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFFNGELTRASP--WKRIPLYYIPQAQG 240 (345)
Q Consensus 163 ye~~~g~~V~~~G~~i~~~~~~~~p~lgASPDGlv~~~~~g~~~~gilEIKcP~~~~~~~~~~~--~~~iP~~Y~~QvQ~ 240 (345)
|++.+|..|..+|+++ ++++|||+|||||++. +.++||||||+..++...... +.++|.+||+|||+
T Consensus 95 y~~~tg~~V~~~g~~~----~~~~p~l~ASpDGlv~-------~~~ilEiKcp~~~~~~~~~~~~g~~~ip~~Y~~QvQ~ 163 (229)
T 3sm4_A 95 FEFTSGVNVTESPIIY----RDESMRTACSPDGLCS-------DGNGLELACPFTSRDFMKFRLGGFEAIKSAYMAQVQY 163 (229)
T ss_dssp HHHHHSCCEECCCCEE----SSTTCCEEECCSEEET-------TSCEEEEECCSSHHHHHHHHHHGGGGTHHHHHHHHHH
T ss_pred HHHHHCCeeEECCeEE----eCCCCceeecCceecC-------CCcEEEEecCCcchhhHHHHhcCcccCCHHHHHHHHH
Confidence 9999999999999987 6789999999999985 568999999987532111011 22699999999999
Q ss_pred HhhhhcCCceeEEEEeCC----CceEEEEeCCHHHHHHHHHHHHHHHH
Q 019146 241 LMEILDRDWMDFYVWTPN----GSSLFRVYRDLEYWDVMKMALSDFWW 284 (345)
Q Consensus 241 QM~Vtg~~~~dfvv~~~~----~~~i~rV~RDe~~i~~i~~~~~eFw~ 284 (345)
||+|+|+++|||++|+++ ++++++|+||+++|+.|++++.+||.
T Consensus 164 qm~vtg~~~~~f~~~~~~~~~~~~~i~rI~RD~~~i~~l~~~~~~Fw~ 211 (229)
T 3sm4_A 164 SMWVTRKNAWYFANYDPRMKREGLHYVVIERDEKYMASFDEIVPEFIE 211 (229)
T ss_dssp HHHHHTCSEEEEEEECTTSSSCCEEEEEEECCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCEEEEEEEeCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 999999999999999884 58999999999999999999999995
No 3
>3k93_A Phage related exonuclease; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS hydrolase; 2.15A {Haemophilus somnus 129PT}
Probab=99.96 E-value=5.4e-29 Score=227.54 Aligned_cols=162 Identities=23% Similarity=0.199 Sum_probs=128.4
Q ss_pred HhcCCcccchHHHhhcCCC---------CC------hHHHHHHHh-cCCCCCCchHHHHHHHHhhHHHHHHHHHHhCCee
Q 019146 108 LRKHKLTASTFAGAIGFWP---------RR------RVQLWLEKI-GAIEPFLGNLATCWSNIKEEDALERYKLITGNTV 171 (345)
Q Consensus 108 ~R~~rITAS~~~~ilG~~~---------~s------~~~L~~eKi-G~~~~~~~n~am~~G~~~E~~A~~~ye~~~g~~V 171 (345)
+|.-+||||.++.+++..+ ++ ..+|..|++ |.. ++.+|++|+||+.+||.||+.|+..+|..+
T Consensus 5 ~~~~~iTaS~~~~v~~~~k~~~~~~~g~~s~~a~~Y~~eLi~E~ltG~~-~~~~n~~m~~G~~lEp~Ar~~y~~~~~~~~ 83 (223)
T 3k93_A 5 LYHLKVRCSSLHKIIGEPKSKADKEAGKLTDTAKSAVREMAKFDLFGYN-AFEGNKYTQKGNELEEQAIKLSGVTRGLAL 83 (223)
T ss_dssp GCCCCEEGGGHHHHHCCCSSHHHHHTTCCCHHHHHHHHHHHHHHHHCCC-SCCCCHHHHHHHHTHHHHHHHHHHHHTCCC
T ss_pred cceeeeEechHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHhCCC-cccCCHHHHhhHhhhHHHHHHHHHHHCCcc
Confidence 5667899999999996644 22 368899998 764 677899999999999999999999999987
Q ss_pred ee-eceEeeccCCCCCCccccCCCCcccccccCCCCCceEEeeccCcCCcccccCCCCCCCcc----cHHHHHHHhhhhc
Q 019146 172 YF-TEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFFNGELTRASPWKRIPLY----YIPQAQGLMEILD 246 (345)
Q Consensus 172 ~~-~G~~i~~~~~~~~p~lgASPDGlv~~~~~g~~~~gilEIKcP~~~~~~~~~~~~~~iP~~----Y~~QvQ~QM~Vtg 246 (345)
.+ +|+.. .+++||||||++.. ++++||||||++.++...... +.++.. |++|||+||+|+|
T Consensus 84 ~~~~~~~~-------~d~~g~SpDGl~~~------~~gllEIKCp~s~~t~~~~~~-e~~~k~~~~~Y~~QmQ~~M~l~g 149 (223)
T 3k93_A 84 KKNTERRE-------NEFITGECDIYVPS------RKLIIDTKCSWDIGSHPFFTD-EAQEKAKKAGYDIQMQGYMWLWD 149 (223)
T ss_dssp CCCCCCEE-------CSSEEECCSEEEGG------GTEEEEEEECSSTTTSCCSHH-HHHHHHHHHTHHHHHHHHHHHHT
T ss_pred ccccceec-------cCCeeecCccccCC------CCCeEEEeCCCCccccchhhh-cCccccccccHHHHHHhhhhhcC
Confidence 74 56543 46899999999861 469999999998765332111 123333 9999999999999
Q ss_pred CCc--eeEEEEe-C-----------------------CCceEEEEeCCHHHHHHHHHHHHHHHH
Q 019146 247 RDW--MDFYVWT-P-----------------------NGSSLFRVYRDLEYWDVMKMALSDFWW 284 (345)
Q Consensus 247 ~~~--~dfvv~~-~-----------------------~~~~i~rV~RDe~~i~~i~~~~~eFw~ 284 (345)
++| |||+.|. | ..+.+.+|+||+++|++|.+++..|-.
T Consensus 150 ~~~a~~df~l~~~P~~~~~~yd~~~~~~~~v~~i~~~~ri~~~~V~RDe~~I~~i~~~v~~~~~ 213 (223)
T 3k93_A 150 CDQAQIDFVLFPTPLNLISAYDSDFKLIDLVEQIPQIRRITTVIIQRDNELIDKIKERVSAAQK 213 (223)
T ss_dssp CSEEEEEEECCCCCGGGCCTTSCHHHHTHHHHTSCGGGGEEEEEEECCHHHHHHHHHHHHHHHH
T ss_pred CCceeeeEEEecChhhhccccCchhhhhhhhhccChhhceEEEEEecCHHHHHHHHHHHHHHHH
Confidence 999 7777764 3 135788999999999999999988864
No 4
>2w45_A Nuclease, alkaline exonuclease; endonuclease, gamma-herpesvirus, EBV, BGLF5, DNAse, hydrolase, epstein-BARR virus; 3.00A {Human herpesvirus 4} PDB: 2w4b_A
Probab=99.84 E-value=1.4e-21 Score=195.06 Aligned_cols=123 Identities=15% Similarity=-0.008 Sum_probs=93.3
Q ss_pred HHHHHHhhhccccCCCHHHHHHhcCCcccchHHHhhcCCCCChHHHHHHHhcCCCCCCchHHHHHHHHhhHHHHHHHHH-
Q 019146 87 GESHSILQSSSLQHWFKNWQKLRKHKLTASTFAGAIGFWPRRRVQLWLEKIGAIEPFLGNLATCWSNIKEEDALERYKL- 165 (345)
Q Consensus 87 ~e~~~ie~~t~~qq~s~eW~~~R~~rITAS~~~~ilG~~~~s~~~L~~eKiG~~~~~~~n~am~~G~~~E~~A~~~ye~- 165 (345)
+.+..||..|++||+|++|+.+|.++||||.++.++...+.+.+..|. | ......++||+||+++|+.|++.|+.
T Consensus 101 ~~~~~IE~~TRgQs~n~lW~~LR~GrITAS~~~~v~~~~~~k~~~~~~---~-~~~~~~s~Am~fG~~~E~~Ar~l~e~~ 176 (470)
T 2w45_A 101 VLCSYVESMTRGQSENLMWDILRNGIISSSKLLSTIKNGPTKVFEPAP---I-STNHYFGGPVAFGLRCEDTVKDIVCKL 176 (470)
T ss_dssp HHHHHHHHHHSSCTTSHHHHHHHTTCEESTTHHHHHHHCSGGGGSCC-----------CCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhccCCCHHHHHHHCCCccccccchhhcCCCcceeeecc---c-cccccCcHHHHHHHHhHHHHHHHHHHH
Confidence 467899999999999999999999999999999887522211111011 1 11122578999999999999999998
Q ss_pred --HhCCeeeeeceEeeccCCCCCCccccCCCCcccccccCCCCCc-------eEEeeccCcCC
Q 019146 166 --ITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGG-------VLEIKCPFFNG 219 (345)
Q Consensus 166 --~~g~~V~~~G~~i~~~~~~~~p~lgASPDGlv~~~~~g~~~~g-------ilEIKcP~~~~ 219 (345)
.++..|.+|||++ ++..+++||||||++.+. .+ .+.+ ++|||||+++.
T Consensus 177 ~~~~~~~V~~cGL~i----sp~~g~~GASPDglv~~~-~~-d~~~~~~p~~~vlEIKCP~kY~ 233 (470)
T 2w45_A 177 ICGDASANRQFGFMI----SPTDGIFGVSLDLCVNVE-SQ-GDFILFTDRSCIYEIKCRFKYL 233 (470)
T ss_dssp TTTTCCEECCCCCEE----CTTTSSEEECCSEEEEEE-EE-TTEEEEEEEEEEEEEEECGGGC
T ss_pred hhccCCeeeccceEE----eCCCCcEEECCCeeeeee-cc-CCcccccCCccEEEEcCCcccc
Confidence 5688999999998 678899999999999531 11 1223 89999998764
No 5
>3fhd_A ORF 37; enase like PD-(D/E)XK superfamily, hydrolase; 1.85A {Human herpesvirus 8 type M} PDB: 3pov_A*
Probab=99.78 E-value=1.6e-19 Score=180.37 Aligned_cols=123 Identities=17% Similarity=0.096 Sum_probs=84.8
Q ss_pred HHHHHhhhccccCCCHHHHHHhcCCcccchHHHhhcCCC--CChHHHHHHHhcCCCCCCchHHHHHHHHhhHHHHHHHHH
Q 019146 88 ESHSILQSSSLQHWFKNWQKLRKHKLTASTFAGAIGFWP--RRRVQLWLEKIGAIEPFLGNLATCWSNIKEEDALERYKL 165 (345)
Q Consensus 88 e~~~ie~~t~~qq~s~eW~~~R~~rITAS~~~~ilG~~~--~s~~~L~~eKiG~~~~~~~n~am~~G~~~E~~A~~~ye~ 165 (345)
-+..||..|++|++|++|+.+|.++||||.+..++.... ....+ ..|.......++||.||+.+|+.|++.+++
T Consensus 140 l~~~IE~~TRGQS~N~LW~~LR~GrITAS~~~~v~~k~~s~~~~f~----~~~~~~~~~~s~AM~fG~~~E~~AK~li~~ 215 (508)
T 3fhd_A 140 ICCLVERATSSQSLNPVWDALRDGIISSSKFHWAVKQQNTSKKIFS----PWPITNNHFVAGPLAFGLRCEEVVKTLLAT 215 (508)
T ss_dssp HHHHHHHHTTTGGGSTTHHHHHTTSEEGGGHHHHHHTCSTTSCSCC--------------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCccCHHHHHHHcCCeeeccceehhhcccCCCCccc----cCCccccccCCHHHHHhHhhHHHHHHHHHH
Confidence 466789999999999999999999999999999874211 00000 012222223579999999999999997776
Q ss_pred Hh---CCeeeeeceEeeccCCCCCCccccCCCCcccccccCC------CCCceEEeeccCcC
Q 019146 166 IT---GNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDL------PSGGVLEIKCPFFN 218 (345)
Q Consensus 166 ~~---g~~V~~~G~~i~~~~~~~~p~lgASPDGlv~~~~~g~------~~~gilEIKcP~~~ 218 (345)
.. +..|.+|||++ ++..+++||||||++.|..++. ++..|+||||||.+
T Consensus 216 ~i~~~~~~V~dCGL~I----sp~~Gl~GASPD~l~~~~~~~~G~l~~~~~~~vyEIKCR~KY 273 (508)
T 3fhd_A 216 LLHPDETNCLDYGFMQ----SPQNGIFGVSLDFAANVKTDTEGRLQFDPNCKVYEIKCRFKY 273 (508)
T ss_dssp HTCTTSCEECCCCCEE----CTTTSSEEECCSEEEEEEECSSSCEEEEEEEEEEEEEECGGG
T ss_pred HhhcCCCeeeeeeeeE----eCCCCcceEcCCeEEeeecCCCCceeecCCceEEEEecCccc
Confidence 54 57899999998 6778999999999997643221 12457999999876
No 6
>4ic1_A Uncharacterized protein; CAS4, crispr, MCSG, exonuclease, structural genomics, unknow function; 2.35A {Sulfolobus solfataricus}
Probab=91.25 E-value=1.4 Score=38.89 Aligned_cols=129 Identities=13% Similarity=-0.050 Sum_probs=72.9
Q ss_pred hHHHHHHHhc-C-CCCCCchHHHHHHHHhhHHHHHHHHHHhCC--eeee-eceEeeccCCCCCCccccCCCCcccccccC
Q 019146 129 RVQLWLEKIG-A-IEPFLGNLATCWSNIKEEDALERYKLITGN--TVYF-TEFQVYRDKSRDDDWLAASPDGLVDRFVYD 203 (345)
Q Consensus 129 ~~~L~~eKiG-~-~~~~~~n~am~~G~~~E~~A~~~ye~~~g~--~V~~-~G~~i~~~~~~~~p~lgASPDGlv~~~~~g 203 (345)
|.++|++... . ......|..|.-|...-+.+...+....|. +|.- ..+.+. +. .-.+.+-.|++... +
T Consensus 37 pR~~~l~~~~~~~~~~E~~~~~~~~G~~~H~~~~~~~~~~~~v~~Ev~i~~~~~v~---~~-~~~l~GriD~i~~~---~ 109 (206)
T 4ic1_A 37 PRRVRYESEYKELAISQVYAPSAILGDILHLGLESVLKGNFNAETEVETLREINVG---GK-VYKIKGRADAIIRN---D 109 (206)
T ss_dssp HHHHHHHHHCHHHHGGGGGCHHHHHHHHHHHHHHHHHHHHSCEEEEEEEEEEEEET---TE-EEEEEEEEEEEEC-----
T ss_pred CCHHHHHHHccccccccccChHHHHHHHHHHHHHHHHHhccCccceEEEEEEEEeC---Ce-EEEEEEEEEEEEEc---C
Confidence 5668887662 1 111124788999999888887777666532 1111 112120 11 12356788998752 1
Q ss_pred CCCCceEEeeccCcCCcccccCCCCCCCcccHHHHHHHhhhhcCCceeEEEEeCCCceEEEE--eCCHHHH
Q 019146 204 LPSGGVLEIKCPFFNGELTRASPWKRIPLYYIPQAQGLMEILDRDWMDFYVWTPNGSSLFRV--YRDLEYW 272 (345)
Q Consensus 204 ~~~~gilEIKcP~~~~~~~~~~~~~~iP~~Y~~QvQ~QM~Vtg~~~~dfvv~~~~~~~i~rV--~RDe~~i 272 (345)
.....++|+|+-.... . .....|.+|+..++++.+.+.+.++....+....+.+ +.|++.+
T Consensus 110 ~g~~~ive~Ktg~~~~-------~-~~~~~~~~Ql~~Y~~~l~~~~G~L~Y~~~~~~~~v~~~~~l~~~~~ 172 (206)
T 4ic1_A 110 NGKSIVIEIKTSRSDK-------G-LPLIHHKMQLQIYLWLFSAEKGILVYITPDRIAEYEINEPLDEATI 172 (206)
T ss_dssp --CCEEEEEECCSCCT-------T-SSCHHHHHHHHHHHHHHTCSEEEEEEEETTEEEEEEECCCCCHHHH
T ss_pred CCCEEEEEEecCCCCc-------c-cccHHHHHHHHHHHHHHHcCCCEEEEEeCCceEEEEeCCcCCHHHH
Confidence 1134689999964321 1 1235678999999999998877543333333344444 3555554
No 7
>2wcw_A HJC; type II restriction endonuclease, hydrolase, DNA binding protein, holliday junction resolvase; 1.58A {Archaeoglobus fulgidus} PDB: 2wcz_A 2wiw_A 2wiz_A 2wj0_A
Probab=21.91 E-value=99 Score=25.42 Aligned_cols=55 Identities=15% Similarity=-0.068 Sum_probs=33.8
Q ss_pred HHHHHhhHHHHHHHHHHhCCeeeeeceEeeccCCCCCCccccCCCCcccccccCCCCCceEEeeccCc
Q 019146 150 CWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFF 217 (345)
Q Consensus 150 ~~G~~~E~~A~~~ye~~~g~~V~~~G~~i~~~~~~~~p~lgASPDGlv~~~~~g~~~~gilEIKcP~~ 217 (345)
.-|..-|..|.+.+++. |..|...+ - +. -.-.+-||=+... | .....+|||+..+
T Consensus 6 ~~G~~~E~~a~~~L~~~-Gy~ilR~~--~----sg--~~~~~eiDIIA~~---~-~~lv~IEVKtr~~ 60 (139)
T 2wcw_A 6 SKGTRFERDLLVELWKA-GFAAIRVA--G----AG--VSPFPCPDIVAGN---G-RTYLAIEVKMRKE 60 (139)
T ss_dssp -CHHHHHHHHHHHHHHT-TCEEEEBT--T----SS--SCSSCCCSEEEEC---S-SCEEEEEEEECSS
T ss_pred hhHHHHHHHHHHHHHhC-CcEEEEec--C----CC--CCCCCCCCEEEeE---C-CEEEEEEEEECCC
Confidence 56889999999988865 77766331 0 11 1234677766541 1 1344689999764
No 8
>3fov_A UPF0102 protein RPA0323; structural genomics, APC7380, PSI-2, protein structure initi midwest center for structural genomics, MCSG; 1.88A {Rhodopseudomonas palustris}
Probab=17.28 E-value=79 Score=25.95 Aligned_cols=57 Identities=16% Similarity=0.040 Sum_probs=30.1
Q ss_pred hHHHHHHHHhhHHHHHHHHHHhCCeeeeeceEeeccCCCCCCccccCCCCcccccccCCCCCceEEeeccCc
Q 019146 146 NLATCWSNIKEEDALERYKLITGNTVYFTEFQVYRDKSRDDDWLAASPDGLVDRFVYDLPSGGVLEIKCPFF 217 (345)
Q Consensus 146 n~am~~G~~~E~~A~~~ye~~~g~~V~~~G~~i~~~~~~~~p~lgASPDGlv~~~~~g~~~~gilEIKcP~~ 217 (345)
..+-..|..-|..|..+++ ..|..|.+.++-.. .+-.|=+.. .| ..-..+|||+-.+
T Consensus 17 ~~~~~~G~~gE~~A~~~L~-~~Gy~Il~rN~r~~----------~GEIDiIa~---~~-~~LVFVEVKtR~~ 73 (134)
T 3fov_A 17 IAAFRTGLSAEASAADYLE-RQGYRILARRFKTR----------CGEIDLVAQ---RD-ALVAFVEVKARGN 73 (134)
T ss_dssp --------CHHHHHHHHHH-HTTCEEEEEEEEET----------TEEEEEEEE---ET-TEEEEEEEEEC--
T ss_pred chHHHHHHHHHHHHHHHHH-HCCCEEEeccccCC----------CCcEEEEEE---EC-CEEEEEEEEEccC
Confidence 3456789999999987766 56999988876531 234444433 11 1234589999654
No 9
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=16.30 E-value=1.2e+02 Score=23.11 Aligned_cols=68 Identities=13% Similarity=0.041 Sum_probs=38.9
Q ss_pred CCceEEeeccCcCCcccccCC-CCCCCcccHHHHHHHhhhhcCCceeE-EEEeCCCceEEEEeCCHHHHHHH
Q 019146 206 SGGVLEIKCPFFNGELTRASP-WKRIPLYYIPQAQGLMEILDRDWMDF-YVWTPNGSSLFRVYRDLEYWDVM 275 (345)
Q Consensus 206 ~~gilEIKcP~~~~~~~~~~~-~~~iP~~Y~~QvQ~QM~Vtg~~~~df-vv~~~~~~~i~rV~RDe~~i~~i 275 (345)
+.++||||.-|...--..... .......++.++-..++- ..-.+| +.|+...-.+..|.-|+++...+
T Consensus 3 ~~~~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~--L~~~~f~i~Y~D~dGDLlpInnDdnl~~Al 72 (86)
T 1wmh_B 3 HMSIVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQ--IPGLDVLLGYTDAHGDLLPLTNDDSLHRAL 72 (86)
T ss_dssp --CEEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTT--CTTCCCEEEEECTTSCEEECCSHHHHHHHT
T ss_pred CCCEEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcC--CCCCCEEEEEECCCCCEeeecCHHHHHHHH
Confidence 568999999876421111111 112345566666555543 333344 45666567888999999887654
No 10
>2fcg_F Cationic, antibacterial protein FALL-39, core peptide; HOST defense peptide, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=15.03 E-value=1.5e+02 Score=17.42 Aligned_cols=20 Identities=20% Similarity=0.498 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhccCCcc
Q 019146 272 WDVMKMALSDFWWKHVQPARE 292 (345)
Q Consensus 272 i~~i~~~~~eFw~~~V~p~~e 292 (345)
+.+|.+++++|+ .+..|..|
T Consensus 5 ~kkIgQkIkdFf-~~l~prte 24 (26)
T 2fcg_F 5 FKRIVQRIKDFL-RNLVPRTE 24 (26)
T ss_dssp HHHHHHHHHHHH-HHSCCSCC
T ss_pred HHHHHHHHHHHH-HhcCcccc
Confidence 467888999998 56777554
Done!