Query 019147
Match_columns 345
No_of_seqs 187 out of 1496
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 07:05:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019147.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019147hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 5.6E-70 1.2E-74 505.6 32.3 306 9-318 1-310 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 7.7E-68 1.7E-72 481.9 31.2 316 7-327 10-335 (336)
3 TIGR01293 Kv_beta voltage-depe 100.0 7E-63 1.5E-67 461.1 31.3 298 11-315 1-316 (317)
4 PRK09912 L-glyceraldehyde 3-ph 100.0 1.4E-62 3.1E-67 463.8 33.2 313 1-318 4-334 (346)
5 PRK10625 tas putative aldo-ket 100.0 3.5E-62 7.7E-67 461.7 33.0 305 9-317 1-339 (346)
6 COG0656 ARA1 Aldo/keto reducta 100.0 8.5E-62 1.8E-66 434.7 25.6 257 9-319 3-266 (280)
7 PLN02587 L-galactose dehydroge 100.0 5E-60 1.1E-64 441.5 30.0 286 11-317 1-300 (314)
8 cd06660 Aldo_ket_red Aldo-keto 100.0 3.4E-58 7.3E-63 423.9 30.8 280 11-314 1-284 (285)
9 PRK10376 putative oxidoreducta 100.0 2E-57 4.4E-62 419.1 29.9 272 12-317 10-288 (290)
10 KOG1577 Aldo/keto reductase fa 100.0 2.8E-57 6.1E-62 405.4 24.3 259 11-320 6-288 (300)
11 PF00248 Aldo_ket_red: Aldo/ke 100.0 3.5E-57 7.7E-62 416.7 24.5 276 23-316 1-282 (283)
12 PRK11172 dkgB 2,5-diketo-D-glu 100.0 1.1E-55 2.5E-60 402.8 27.3 245 20-318 2-253 (267)
13 PRK14863 bifunctional regulato 100.0 1.3E-55 2.8E-60 406.5 23.9 269 18-315 2-280 (292)
14 COG4989 Predicted oxidoreducta 100.0 1.2E-54 2.6E-59 372.4 22.5 284 9-318 1-294 (298)
15 PRK11565 dkgA 2,5-diketo-D-glu 100.0 8.8E-54 1.9E-58 391.7 27.4 254 11-319 6-264 (275)
16 KOG1576 Predicted oxidoreducta 100.0 4E-51 8.6E-56 353.2 21.9 282 8-306 21-310 (342)
17 COG1453 Predicted oxidoreducta 100.0 2.2E-50 4.7E-55 364.6 23.7 272 9-317 1-285 (391)
18 KOG3023 Glutamate-cysteine lig 98.0 1.1E-05 2.3E-10 70.2 5.8 71 141-212 155-227 (285)
19 cd03319 L-Ala-DL-Glu_epimerase 92.3 5.5 0.00012 37.1 14.4 155 40-217 134-291 (316)
20 cd03316 MR_like Mandelate race 83.6 40 0.00087 31.8 14.3 153 40-212 139-298 (357)
21 PRK08609 hypothetical protein; 83.4 56 0.0012 33.3 16.2 149 44-209 351-522 (570)
22 PRK10550 tRNA-dihydrouridine s 83.3 39 0.00085 31.5 13.7 133 40-185 73-224 (312)
23 PRK08392 hypothetical protein; 82.6 32 0.00069 30.0 12.1 149 43-209 15-178 (215)
24 cd04740 DHOD_1B_like Dihydroor 82.3 38 0.00082 31.1 13.1 152 40-206 100-286 (296)
25 PRK07945 hypothetical protein; 82.0 20 0.00043 33.9 11.2 155 42-209 111-288 (335)
26 PRK07535 methyltetrahydrofolat 81.9 31 0.00068 31.3 12.0 134 107-270 23-158 (261)
27 cd00739 DHPS DHPS subgroup of 80.4 24 0.00052 31.9 10.7 143 106-269 21-169 (257)
28 PRK00164 moaA molybdenum cofac 80.1 52 0.0011 30.7 13.4 152 39-210 49-228 (331)
29 cd03315 MLE_like Muconate lact 79.7 46 0.001 29.9 14.9 158 40-218 85-244 (265)
30 cd03174 DRE_TIM_metallolyase D 79.1 12 0.00025 33.7 8.4 106 105-212 15-135 (265)
31 cd00423 Pterin_binding Pterin 78.9 31 0.00068 31.1 11.1 102 106-213 21-128 (258)
32 PF07021 MetW: Methionine bios 78.0 19 0.00042 31.0 8.7 150 46-218 5-172 (193)
33 PRK13958 N-(5'-phosphoribosyl) 77.5 7.3 0.00016 34.0 6.3 67 118-186 16-83 (207)
34 COG1748 LYS9 Saccharopine dehy 73.8 18 0.00039 34.8 8.3 81 42-138 79-159 (389)
35 PTZ00413 lipoate synthase; Pro 71.3 92 0.002 30.0 12.2 158 39-216 177-373 (398)
36 TIGR02370 pyl_corrinoid methyl 70.9 46 0.001 28.7 9.6 145 40-206 10-164 (197)
37 PRK01222 N-(5'-phosphoribosyl) 70.0 13 0.00028 32.6 6.0 67 119-187 19-86 (210)
38 COG1140 NarY Nitrate reductase 69.8 2.2 4.7E-05 40.2 1.1 54 154-207 263-317 (513)
39 PRK12581 oxaloacetate decarbox 65.5 1.4E+02 0.003 29.6 12.6 110 40-167 103-216 (468)
40 PRK10558 alpha-dehydro-beta-de 65.1 47 0.001 30.0 8.7 67 148-215 10-79 (256)
41 PRK07259 dihydroorotate dehydr 64.7 1.2E+02 0.0025 28.0 11.7 152 40-206 102-289 (301)
42 cd00740 MeTr MeTr subgroup of 64.7 1.1E+02 0.0023 27.6 12.5 103 106-213 23-127 (252)
43 cd00308 enolase_like Enolase-s 64.2 41 0.00088 29.6 8.1 87 127-217 120-208 (229)
44 cd04731 HisF The cyclase subun 63.7 88 0.0019 27.7 10.3 84 117-203 156-242 (243)
45 PRK10128 2-keto-3-deoxy-L-rham 63.2 64 0.0014 29.4 9.2 66 148-214 9-77 (267)
46 cd03323 D-glucarate_dehydratas 63.1 1.5E+02 0.0032 28.6 14.4 152 40-215 168-322 (395)
47 PRK04452 acetyl-CoA decarbonyl 61.4 95 0.0021 29.1 10.1 95 117-214 83-184 (319)
48 cd02070 corrinoid_protein_B12- 61.3 1.1E+02 0.0023 26.4 11.0 149 40-210 9-170 (201)
49 COG2355 Zn-dependent dipeptida 60.6 71 0.0015 29.8 9.1 107 42-164 149-260 (313)
50 TIGR01928 menC_lowGC/arch o-su 60.4 1.5E+02 0.0032 27.7 14.7 154 40-218 132-287 (324)
51 PF03102 NeuB: NeuB family; I 60.1 57 0.0012 29.2 8.2 112 39-169 53-184 (241)
52 PRK00730 rnpA ribonuclease P; 59.7 52 0.0011 26.8 7.1 63 82-154 46-110 (138)
53 cd01973 Nitrogenase_VFe_beta_l 59.5 1.6E+02 0.0035 29.0 12.1 113 62-184 65-194 (454)
54 COG0135 TrpF Phosphoribosylant 59.4 29 0.00063 30.3 6.1 83 119-210 18-103 (208)
55 PLN02389 biotin synthase 58.7 1.6E+02 0.0034 28.4 11.5 101 39-156 116-227 (379)
56 COG4130 Predicted sugar epimer 58.5 46 0.00099 29.3 6.9 81 165-264 49-136 (272)
57 cd07943 DRE_TIM_HOA 4-hydroxy- 58.3 1.4E+02 0.0031 26.8 14.7 116 38-174 18-147 (263)
58 TIGR01502 B_methylAsp_ase meth 57.5 47 0.001 32.3 7.7 86 128-214 265-357 (408)
59 PRK13796 GTPase YqeH; Provisio 57.4 1.8E+02 0.0039 27.7 12.8 122 39-172 54-178 (365)
60 TIGR02026 BchE magnesium-proto 57.0 89 0.0019 31.2 9.9 66 139-206 320-392 (497)
61 cd03322 rpsA The starvation se 56.9 1.8E+02 0.0039 27.6 14.5 147 40-214 126-274 (361)
62 cd00408 DHDPS-like Dihydrodipi 56.4 1.5E+02 0.0034 26.7 14.8 54 39-93 15-74 (281)
63 PRK09613 thiH thiamine biosynt 56.2 94 0.002 30.8 9.7 168 40-209 29-236 (469)
64 cd02930 DCR_FMN 2,4-dienoyl-Co 56.0 1.8E+02 0.004 27.4 13.2 97 83-184 202-305 (353)
65 TIGR03239 GarL 2-dehydro-3-deo 55.6 78 0.0017 28.5 8.4 67 148-215 3-72 (249)
66 TIGR00190 thiC thiamine biosyn 55.3 1.6E+02 0.0035 28.5 10.5 151 40-221 75-228 (423)
67 TIGR03822 AblA_like_2 lysine-2 55.0 1.8E+02 0.004 27.1 12.4 109 107-218 120-240 (321)
68 COG1801 Uncharacterized conser 55.0 1.7E+02 0.0036 26.6 10.4 108 23-138 4-115 (263)
69 PRK07379 coproporphyrinogen II 54.4 72 0.0016 30.8 8.6 60 106-167 179-255 (400)
70 PRK05660 HemN family oxidoredu 53.9 84 0.0018 30.1 8.9 61 106-168 171-244 (378)
71 cd01974 Nitrogenase_MoFe_beta 53.7 2.2E+02 0.0049 27.7 12.4 109 62-183 64-192 (435)
72 TIGR01496 DHPS dihydropteroate 53.6 1.7E+02 0.0037 26.4 12.8 99 106-212 20-125 (257)
73 PRK06294 coproporphyrinogen II 53.2 88 0.0019 29.8 8.9 61 105-167 166-243 (370)
74 PRK05692 hydroxymethylglutaryl 53.1 27 0.00058 32.2 5.1 102 106-210 23-138 (287)
75 cd03318 MLE Muconate Lactonizi 53.0 52 0.0011 31.3 7.3 73 144-216 227-301 (365)
76 TIGR01430 aden_deam adenosine 52.7 1.9E+02 0.0042 26.7 13.4 104 107-215 138-242 (324)
77 PRK05414 urocanate hydratase; 52.5 39 0.00085 33.5 6.2 115 48-176 118-254 (556)
78 TIGR01228 hutU urocanate hydra 52.3 39 0.00085 33.3 6.1 125 48-186 109-258 (545)
79 COG0635 HemN Coproporphyrinoge 52.1 1.1E+02 0.0025 29.7 9.5 60 106-167 201-276 (416)
80 PF00682 HMGL-like: HMGL-like 52.0 1E+02 0.0023 27.0 8.7 120 39-174 11-143 (237)
81 TIGR00735 hisF imidazoleglycer 51.3 1.3E+02 0.0027 27.0 9.1 90 116-208 161-253 (254)
82 PRK15072 bifunctional D-altron 51.0 89 0.0019 30.2 8.6 83 128-214 233-317 (404)
83 COG2102 Predicted ATPases of P 50.9 27 0.00059 30.7 4.5 100 140-267 74-177 (223)
84 PF11242 DUF2774: Protein of u 50.6 22 0.00048 24.4 3.0 23 254-276 15-37 (63)
85 COG0502 BioB Biotin synthase a 50.6 1.9E+02 0.0041 27.3 10.3 135 39-193 84-235 (335)
86 cd07943 DRE_TIM_HOA 4-hydroxy- 50.1 1.2E+02 0.0027 27.2 9.0 105 105-211 18-131 (263)
87 TIGR00126 deoC deoxyribose-pho 49.8 1.2E+02 0.0026 26.5 8.5 72 40-126 130-205 (211)
88 TIGR02534 mucon_cyclo muconate 49.3 59 0.0013 30.9 7.0 73 145-217 227-301 (368)
89 cd03314 MAL Methylaspartate am 48.9 1.3E+02 0.0028 28.8 9.2 84 130-213 230-320 (369)
90 PF11020 DUF2610: Domain of un 48.5 42 0.0009 24.4 4.3 29 246-274 48-76 (82)
91 PRK06424 transcription factor; 48.3 46 0.001 27.3 5.2 82 194-276 22-110 (144)
92 COG2069 CdhD CO dehydrogenase/ 48.3 1.7E+02 0.0038 27.0 9.2 95 117-216 158-262 (403)
93 PF14871 GHL6: Hypothetical gl 48.2 24 0.00053 28.4 3.6 25 191-215 43-67 (132)
94 PRK10415 tRNA-dihydrouridine s 48.2 2.3E+02 0.0051 26.4 12.2 135 40-186 75-225 (321)
95 PRK08446 coproporphyrinogen II 48.2 2E+02 0.0043 27.2 10.4 60 106-167 162-231 (350)
96 PLN02428 lipoic acid synthase 48.1 2E+02 0.0043 27.4 10.1 158 39-216 130-325 (349)
97 PLN02746 hydroxymethylglutaryl 47.8 82 0.0018 29.9 7.5 99 106-210 65-180 (347)
98 cd01965 Nitrogenase_MoFe_beta_ 47.8 2.7E+02 0.0059 27.0 12.5 109 63-184 61-188 (428)
99 PRK13352 thiamine biosynthesis 47.7 2.5E+02 0.0054 27.3 10.6 94 104-221 138-231 (431)
100 PF13378 MR_MLE_C: Enolase C-t 47.6 21 0.00045 27.3 3.0 54 163-217 3-57 (111)
101 CHL00076 chlB photochlorophyll 47.5 2E+02 0.0043 28.9 10.6 89 127-215 117-248 (513)
102 PRK07328 histidinol-phosphatas 47.3 2.2E+02 0.0047 25.7 13.2 112 43-164 19-162 (269)
103 TIGR02311 HpaI 2,4-dihydroxyhe 47.2 1.9E+02 0.004 26.0 9.5 65 148-213 3-70 (249)
104 cd07944 DRE_TIM_HOA_like 4-hyd 47.1 1.4E+02 0.003 27.0 8.8 107 104-211 15-128 (266)
105 PRK06361 hypothetical protein; 46.5 1.9E+02 0.0041 24.9 18.8 187 43-274 11-201 (212)
106 cd02810 DHOD_DHPD_FMN Dihydroo 46.3 2.3E+02 0.005 25.7 12.6 131 40-185 109-272 (289)
107 PLN02363 phosphoribosylanthran 46.3 66 0.0014 29.1 6.4 74 107-186 56-130 (256)
108 PRK09427 bifunctional indole-3 46.0 58 0.0013 32.1 6.4 65 119-187 273-338 (454)
109 PRK14461 ribosomal RNA large s 46.0 1.4E+02 0.0031 28.6 8.8 89 130-219 232-355 (371)
110 COG0159 TrpA Tryptophan syntha 45.7 1.3E+02 0.0028 27.4 8.1 20 282-301 209-228 (265)
111 cd03327 MR_like_2 Mandelate ra 45.5 90 0.0019 29.4 7.5 81 127-211 197-279 (341)
112 COG1121 ZnuC ABC-type Mn/Zn tr 45.3 1E+02 0.0022 27.9 7.4 65 107-174 113-206 (254)
113 cd07939 DRE_TIM_NifV Streptomy 44.3 2.3E+02 0.0051 25.3 9.8 97 105-209 16-127 (259)
114 PRK02901 O-succinylbenzoate sy 44.3 1.6E+02 0.0034 27.7 8.8 72 145-218 173-245 (327)
115 cd03325 D-galactonate_dehydrat 44.3 1.3E+02 0.0029 28.3 8.6 69 144-212 215-285 (352)
116 PRK12928 lipoyl synthase; Prov 44.2 1.5E+02 0.0033 27.3 8.6 161 39-214 87-280 (290)
117 TIGR00048 radical SAM enzyme, 44.1 57 0.0012 31.0 6.0 90 129-218 218-335 (355)
118 PF05913 DUF871: Bacterial pro 44.1 87 0.0019 29.9 7.1 207 40-296 12-232 (357)
119 PRK06256 biotin synthase; Vali 43.4 2.8E+02 0.006 25.9 11.1 101 39-156 91-201 (336)
120 cd07937 DRE_TIM_PC_TC_5S Pyruv 42.4 2.7E+02 0.0057 25.3 13.7 124 38-173 17-154 (275)
121 PRK09061 D-glutamate deacylase 42.0 2.7E+02 0.0058 27.9 10.7 113 43-163 170-283 (509)
122 PRK08195 4-hyroxy-2-oxovalerat 41.9 3E+02 0.0066 25.9 15.9 25 38-62 21-45 (337)
123 PRK13803 bifunctional phosphor 41.9 74 0.0016 32.7 6.7 75 108-187 13-88 (610)
124 PRK14017 galactonate dehydrata 41.1 1.6E+02 0.0035 28.2 8.7 70 145-214 217-288 (382)
125 TIGR00035 asp_race aspartate r 41.1 1.2E+02 0.0027 26.6 7.3 63 106-169 14-88 (229)
126 TIGR00676 fadh2 5,10-methylene 40.9 2.8E+02 0.006 25.2 12.4 154 42-219 15-193 (272)
127 PRK09058 coproporphyrinogen II 40.9 1.2E+02 0.0026 29.8 7.9 105 106-222 227-336 (449)
128 PRK07094 biotin synthase; Prov 40.7 2.1E+02 0.0045 26.5 9.2 97 39-156 70-179 (323)
129 PRK15108 biotin synthase; Prov 40.4 3.2E+02 0.007 25.8 12.0 104 39-158 76-187 (345)
130 TIGR03822 AblA_like_2 lysine-2 40.4 3.1E+02 0.0067 25.6 12.2 102 40-156 120-228 (321)
131 PRK01045 ispH 4-hydroxy-3-meth 40.2 68 0.0015 29.7 5.6 108 155-297 156-275 (298)
132 cd03174 DRE_TIM_metallolyase D 40.1 2.7E+02 0.0057 24.7 12.9 25 39-63 16-40 (265)
133 PRK08195 4-hyroxy-2-oxovalerat 39.9 2.2E+02 0.0049 26.8 9.2 102 104-211 20-134 (337)
134 COG0218 Predicted GTPase [Gene 39.9 2.5E+02 0.0055 24.4 10.4 100 42-154 91-198 (200)
135 PRK06740 histidinol-phosphatas 39.9 3.2E+02 0.007 25.6 11.4 50 113-163 156-222 (331)
136 COG4464 CapC Capsular polysacc 39.8 1.8E+02 0.004 25.7 7.7 43 36-79 15-60 (254)
137 TIGR03217 4OH_2_O_val_ald 4-hy 39.4 3.3E+02 0.0072 25.6 16.0 25 38-62 20-44 (333)
138 PF00682 HMGL-like: HMGL-like 39.3 1E+02 0.0022 27.1 6.5 97 106-208 11-124 (237)
139 KOG0259 Tyrosine aminotransfer 39.2 3.7E+02 0.0079 26.0 11.9 65 20-92 62-135 (447)
140 TIGR00126 deoC deoxyribose-pho 39.2 2.6E+02 0.0057 24.4 10.4 100 39-154 15-114 (211)
141 PRK13347 coproporphyrinogen II 39.0 1.3E+02 0.0029 29.5 7.9 60 106-167 216-291 (453)
142 PRK05628 coproporphyrinogen II 39.0 2.2E+02 0.0047 27.1 9.2 28 105-133 171-198 (375)
143 cd01301 rDP_like renal dipepti 38.9 1.9E+02 0.0042 26.9 8.5 110 42-164 154-263 (309)
144 TIGR01927 menC_gamma/gm+ o-suc 38.9 1.7E+02 0.0037 27.1 8.2 73 146-218 196-270 (307)
145 PHA02128 hypothetical protein 38.9 61 0.0013 24.9 4.2 70 142-211 60-150 (151)
146 cd08583 PI-PLCc_GDPD_SF_unchar 38.8 2.5E+02 0.0055 24.6 9.1 21 41-61 14-34 (237)
147 COG0282 ackA Acetate kinase [E 38.6 2E+02 0.0043 27.7 8.4 120 147-297 162-289 (396)
148 cd00405 PRAI Phosphoribosylant 38.2 2.4E+02 0.0052 24.1 8.6 110 35-173 4-116 (203)
149 PF04476 DUF556: Protein of un 38.1 2.9E+02 0.0064 24.6 9.5 145 49-208 14-183 (235)
150 COG1751 Uncharacterized conser 38.0 1.1E+02 0.0023 25.4 5.7 73 40-125 12-85 (186)
151 PF00809 Pterin_bind: Pterin b 37.7 1.9E+02 0.0041 25.1 7.9 90 119-214 28-125 (210)
152 cd00950 DHDPS Dihydrodipicolin 37.4 3.1E+02 0.0068 24.8 14.6 29 39-67 18-46 (284)
153 PRK05283 deoxyribose-phosphate 37.3 2.8E+02 0.0061 25.1 8.9 78 40-128 144-227 (257)
154 COG3172 NadR Predicted ATPase/ 36.9 1.5E+02 0.0033 25.0 6.5 99 53-155 78-185 (187)
155 TIGR02090 LEU1_arch isopropylm 36.7 3.7E+02 0.0079 25.6 10.2 26 38-63 18-43 (363)
156 PF02679 ComA: (2R)-phospho-3- 36.6 26 0.00056 31.5 2.2 98 112-210 24-131 (244)
157 TIGR01278 DPOR_BchB light-inde 36.2 3.1E+02 0.0067 27.5 10.0 101 70-184 69-194 (511)
158 PF01175 Urocanase: Urocanase; 35.9 54 0.0012 32.5 4.4 126 47-186 107-257 (546)
159 TIGR03247 glucar-dehydr glucar 35.8 1.6E+02 0.0034 29.0 7.7 86 129-214 252-338 (441)
160 TIGR02082 metH 5-methyltetrahy 35.8 6.8E+02 0.015 28.2 13.2 122 120-268 378-505 (1178)
161 KOG0059 Lipid exporter ABCA1 a 35.7 1.7E+02 0.0037 31.6 8.6 71 106-178 670-769 (885)
162 TIGR00216 ispH_lytB (E)-4-hydr 35.5 1.2E+02 0.0026 27.9 6.4 115 146-296 145-272 (280)
163 COG2987 HutU Urocanate hydrata 35.5 61 0.0013 31.7 4.5 101 68-182 148-261 (561)
164 PF07994 NAD_binding_5: Myo-in 35.0 2.1E+02 0.0045 26.5 7.9 146 108-293 131-283 (295)
165 COG4555 NatA ABC-type Na+ tran 34.7 1.9E+02 0.004 25.6 6.9 70 105-176 104-202 (245)
166 cd03317 NAAAR N-acylamino acid 34.6 1.1E+02 0.0024 28.8 6.3 85 127-215 203-289 (354)
167 PRK13361 molybdenum cofactor b 34.5 3.8E+02 0.0083 24.9 13.2 95 39-156 45-154 (329)
168 PF01207 Dus: Dihydrouridine s 34.5 1.6E+02 0.0034 27.4 7.2 133 40-184 64-212 (309)
169 cd03321 mandelate_racemase Man 34.2 4E+02 0.0087 25.1 12.8 150 41-210 142-293 (355)
170 PRK02083 imidazole glycerol ph 34.0 3.4E+02 0.0073 24.1 10.5 87 119-208 162-251 (253)
171 TIGR03471 HpnJ hopanoid biosyn 33.9 4.5E+02 0.0098 25.8 10.8 66 140-207 321-393 (472)
172 PRK14476 nitrogenase molybdenu 33.8 4.7E+02 0.01 25.7 12.6 109 63-183 72-200 (455)
173 PRK09490 metH B12-dependent me 33.7 7.3E+02 0.016 28.1 12.9 119 121-266 395-519 (1229)
174 PRK00208 thiG thiazole synthas 33.7 3.6E+02 0.0078 24.3 15.0 76 105-182 72-148 (250)
175 cd02801 DUS_like_FMN Dihydrour 33.1 3.2E+02 0.007 23.6 9.9 132 40-185 65-213 (231)
176 PRK12331 oxaloacetate decarbox 32.9 1.8E+02 0.004 28.6 7.6 103 105-210 22-141 (448)
177 TIGR03849 arch_ComA phosphosul 32.9 84 0.0018 28.1 4.8 97 112-210 11-118 (237)
178 TIGR03217 4OH_2_O_val_ald 4-hy 32.8 3.1E+02 0.0066 25.8 8.9 104 104-210 19-132 (333)
179 PRK12360 4-hydroxy-3-methylbut 32.7 1.5E+02 0.0033 27.2 6.6 43 254-297 226-274 (281)
180 PLN02681 proline dehydrogenase 32.6 5E+02 0.011 25.7 11.1 162 43-216 221-413 (455)
181 PRK09240 thiH thiamine biosynt 32.5 4.5E+02 0.0097 25.1 10.7 100 39-156 104-216 (371)
182 PRK10200 putative racemase; Pr 32.5 1.8E+02 0.0039 25.7 7.0 63 106-169 14-88 (230)
183 PRK09856 fructoselysine 3-epim 32.4 1.2E+02 0.0026 27.2 6.0 52 195-265 93-144 (275)
184 PRK00507 deoxyribose-phosphate 32.1 2E+02 0.0044 25.3 7.1 75 39-125 133-208 (221)
185 TIGR00737 nifR3_yhdG putative 32.0 4.2E+02 0.009 24.6 12.7 138 40-189 73-226 (319)
186 PRK03031 rnpA ribonuclease P; 31.8 2.4E+02 0.0053 22.1 6.9 64 82-154 47-114 (122)
187 PRK08599 coproporphyrinogen II 31.6 2.8E+02 0.0062 26.3 8.7 60 106-167 164-240 (377)
188 TIGR03821 AblA_like_1 lysine-2 31.4 4.4E+02 0.0095 24.6 11.9 108 108-218 127-246 (321)
189 cd02932 OYE_YqiM_FMN Old yello 31.4 4.4E+02 0.0095 24.6 13.8 94 83-184 219-319 (336)
190 TIGR02026 BchE magnesium-proto 31.2 3.6E+02 0.0079 26.8 9.6 101 106-210 222-341 (497)
191 COG0820 Predicted Fe-S-cluster 31.0 2E+02 0.0044 27.3 7.2 88 130-218 216-332 (349)
192 PF00356 LacI: Bacterial regul 30.7 54 0.0012 21.1 2.4 42 255-302 2-43 (46)
193 cd04728 ThiG Thiazole synthase 30.5 4E+02 0.0088 24.0 14.9 76 105-182 72-148 (248)
194 cd07948 DRE_TIM_HCS Saccharomy 30.3 2.3E+02 0.005 25.6 7.4 99 105-211 18-131 (262)
195 PRK06582 coproporphyrinogen II 30.2 2.8E+02 0.0062 26.6 8.4 61 105-167 173-250 (390)
196 TIGR02351 thiH thiazole biosyn 30.2 4.9E+02 0.011 24.8 10.2 101 39-156 103-215 (366)
197 TIGR00677 fadh2_euk methylenet 30.1 4.3E+02 0.0094 24.1 12.0 157 42-219 16-197 (281)
198 PF00697 PRAI: N-(5'phosphorib 29.7 54 0.0012 28.2 3.1 67 118-188 14-81 (197)
199 COG3215 PilZ Tfp pilus assembl 29.4 72 0.0016 24.4 3.2 55 40-96 18-72 (117)
200 cd07948 DRE_TIM_HCS Saccharomy 29.2 4.3E+02 0.0093 23.8 12.5 114 39-173 19-146 (262)
201 smart00642 Aamy Alpha-amylase 29.0 70 0.0015 26.7 3.5 22 195-216 73-94 (166)
202 PRK05799 coproporphyrinogen II 28.9 3.4E+02 0.0073 25.8 8.7 27 106-133 163-189 (374)
203 PF14502 HTH_41: Helix-turn-he 28.8 60 0.0013 21.2 2.3 29 253-281 7-37 (48)
204 PF01402 RHH_1: Ribbon-helix-h 28.7 90 0.002 18.7 3.2 22 250-271 9-30 (39)
205 PF01118 Semialdhyde_dh: Semia 28.5 78 0.0017 24.6 3.6 27 40-66 75-101 (121)
206 PRK15440 L-rhamnonate dehydrat 28.5 2E+02 0.0042 27.9 6.9 67 145-211 248-318 (394)
207 PRK00499 rnpA ribonuclease P; 28.4 2.8E+02 0.0061 21.4 6.9 63 82-154 38-104 (114)
208 PRK03170 dihydrodipicolinate s 28.1 4.6E+02 0.01 23.8 14.9 29 39-67 19-47 (292)
209 PF00072 Response_reg: Respons 28.1 1.9E+02 0.0041 21.2 5.7 65 120-187 37-103 (112)
210 PRK14457 ribosomal RNA large s 28.1 5.2E+02 0.011 24.4 13.2 136 82-218 99-266 (345)
211 COG2874 FlaH Predicted ATPases 27.9 2.5E+02 0.0055 24.9 6.7 113 43-164 44-167 (235)
212 COG0145 HyuA N-methylhydantoin 27.9 6.4E+02 0.014 26.4 10.8 101 39-141 136-247 (674)
213 PRK04390 rnpA ribonuclease P; 27.8 3E+02 0.0065 21.6 7.1 64 82-154 44-110 (120)
214 PRK14459 ribosomal RNA large s 27.7 3.2E+02 0.0069 26.2 8.1 90 129-218 241-361 (373)
215 PRK14477 bifunctional nitrogen 27.7 8.3E+02 0.018 26.6 12.4 108 63-183 551-676 (917)
216 PRK03459 rnpA ribonuclease P; 27.6 3.1E+02 0.0067 21.6 7.0 63 82-154 48-114 (122)
217 PRK09249 coproporphyrinogen II 27.5 2E+02 0.0044 28.2 7.0 17 206-222 317-333 (453)
218 PF01408 GFO_IDH_MocA: Oxidore 27.4 2.7E+02 0.0059 21.0 8.4 44 170-216 54-97 (120)
219 cd01320 ADA Adenosine deaminas 27.3 4.9E+02 0.011 23.9 14.1 156 43-209 74-238 (325)
220 TIGR02668 moaA_archaeal probab 27.3 4.8E+02 0.01 23.7 10.8 113 38-173 39-169 (302)
221 PRK09358 adenosine deaminase; 27.2 5.1E+02 0.011 24.1 13.4 105 108-216 148-253 (340)
222 COG0042 tRNA-dihydrouridine sy 27.0 5.3E+02 0.011 24.1 11.2 132 40-184 77-227 (323)
223 PRK01313 rnpA ribonuclease P; 27.0 3.3E+02 0.0071 21.8 7.0 62 82-153 47-113 (129)
224 PRK14456 ribosomal RNA large s 27.0 2.3E+02 0.0051 27.1 7.1 89 130-218 238-355 (368)
225 TIGR00973 leuA_bact 2-isopropy 26.9 6.4E+02 0.014 25.2 10.4 179 39-222 20-235 (494)
226 PRK14465 ribosomal RNA large s 26.8 4.2E+02 0.009 25.1 8.6 90 129-218 215-331 (342)
227 TIGR00381 cdhD CO dehydrogenas 26.8 5.9E+02 0.013 24.6 12.1 105 109-218 128-253 (389)
228 COG0626 MetC Cystathionine bet 26.7 2.2E+02 0.0047 27.6 6.8 82 141-222 112-196 (396)
229 PRK08776 cystathionine gamma-s 26.7 2.1E+02 0.0046 27.6 6.9 75 143-217 111-187 (405)
230 COG1099 Predicted metal-depend 26.7 4.6E+02 0.01 23.4 8.5 60 181-271 100-162 (254)
231 PRK14466 ribosomal RNA large s 26.5 4.3E+02 0.0093 25.1 8.6 91 129-219 210-328 (345)
232 PRK00077 eno enolase; Provisio 26.5 5.7E+02 0.012 24.9 9.8 96 106-210 261-361 (425)
233 cd02069 methionine_synthase_B1 26.4 4.4E+02 0.0094 23.0 10.2 144 40-206 13-168 (213)
234 cd03329 MR_like_4 Mandelate ra 26.3 5.6E+02 0.012 24.2 14.5 152 40-212 143-299 (368)
235 PF07287 DUF1446: Protein of u 26.3 1.5E+02 0.0032 28.4 5.5 17 195-211 61-77 (362)
236 PF02679 ComA: (2R)-phospho-3- 26.2 1.9E+02 0.0042 25.9 6.0 84 42-133 84-167 (244)
237 COG1168 MalY Bifunctional PLP- 26.1 6E+02 0.013 24.5 11.2 27 195-221 181-207 (388)
238 PRK14463 ribosomal RNA large s 25.9 4.8E+02 0.01 24.7 9.0 91 130-220 211-329 (349)
239 cd07940 DRE_TIM_IPMS 2-isoprop 25.7 4.4E+02 0.0095 23.7 8.4 105 104-216 15-138 (268)
240 PF01904 DUF72: Protein of unk 25.7 4.6E+02 0.01 23.0 10.2 135 48-210 12-147 (230)
241 PF10668 Phage_terminase: Phag 25.6 1.5E+02 0.0032 20.4 3.9 17 254-270 24-40 (60)
242 TIGR03070 couple_hipB transcri 25.5 68 0.0015 20.7 2.4 21 253-273 5-25 (58)
243 PRK08508 biotin synthase; Prov 25.4 5.1E+02 0.011 23.5 10.9 22 39-60 40-61 (279)
244 cd03320 OSBS o-Succinylbenzoat 25.4 2.3E+02 0.005 25.4 6.5 73 144-217 166-239 (263)
245 PRK13210 putative L-xylulose 5 25.1 3.2E+02 0.007 24.4 7.5 51 195-264 97-147 (284)
246 PRK09856 fructoselysine 3-epim 25.0 2.6E+02 0.0055 25.0 6.8 58 160-217 3-72 (275)
247 PRK08208 coproporphyrinogen II 24.9 5.3E+02 0.011 25.1 9.3 62 105-168 204-276 (430)
248 TIGR02660 nifV_homocitr homoci 24.8 4.2E+02 0.0091 25.2 8.4 97 105-209 19-130 (365)
249 COG2256 MGS1 ATPase related to 24.8 3.8E+02 0.0082 26.1 7.8 102 46-166 37-142 (436)
250 smart00052 EAL Putative diguan 24.7 3.6E+02 0.0078 23.0 7.6 97 110-210 100-208 (241)
251 PLN02540 methylenetetrahydrofo 24.6 7.6E+02 0.017 25.2 13.5 150 42-207 15-197 (565)
252 PRK06015 keto-hydroxyglutarate 24.6 1.6E+02 0.0034 25.6 5.0 87 108-210 15-102 (201)
253 cd08562 GDPD_EcUgpQ_like Glyce 24.6 4E+02 0.0087 22.9 7.8 19 195-213 189-207 (229)
254 PRK05588 histidinol-phosphatas 24.4 5E+02 0.011 23.0 10.7 106 42-162 16-144 (255)
255 PF02401 LYTB: LytB protein; 24.3 1.4E+02 0.003 27.4 4.8 116 147-297 145-274 (281)
256 PRK15108 biotin synthase; Prov 24.3 6.1E+02 0.013 23.9 10.1 106 106-215 76-194 (345)
257 TIGR00538 hemN oxygen-independ 24.3 3.8E+02 0.0083 26.3 8.3 61 106-168 215-291 (455)
258 cd04742 NPD_FabD 2-Nitropropan 24.1 2E+02 0.0043 28.1 6.0 68 145-213 28-103 (418)
259 PRK02714 O-succinylbenzoate sy 24.0 4.1E+02 0.0088 24.7 8.1 86 127-218 192-278 (320)
260 TIGR01060 eno phosphopyruvate 24.0 6.7E+02 0.014 24.5 9.8 96 106-210 262-362 (425)
261 cd01821 Rhamnogalacturan_acety 23.7 4.3E+02 0.0094 22.0 7.8 53 195-266 97-149 (198)
262 cd05007 SIS_Etherase N-acetylm 23.7 5.4E+02 0.012 23.1 11.1 122 42-174 36-163 (257)
263 COG3623 SgaU Putative L-xylulo 23.6 1.4E+02 0.003 26.8 4.3 77 16-93 65-156 (287)
264 PF10171 DUF2366: Uncharacteri 23.6 1.4E+02 0.0031 25.3 4.3 48 113-163 67-114 (173)
265 TIGR00742 yjbN tRNA dihydrouri 23.5 6.1E+02 0.013 23.6 12.6 133 40-184 65-222 (318)
266 TIGR01290 nifB nitrogenase cof 23.4 7.2E+02 0.016 24.4 11.9 82 104-190 58-145 (442)
267 COG2089 SpsE Sialic acid synth 23.3 6.4E+02 0.014 23.8 11.5 116 39-173 87-222 (347)
268 PF00289 CPSase_L_chain: Carba 23.2 3.5E+02 0.0076 20.8 7.1 88 110-210 12-104 (110)
269 PRK01903 rnpA ribonuclease P; 23.1 4E+02 0.0086 21.4 7.0 47 107-153 66-128 (133)
270 cd00945 Aldolase_Class_I Class 23.0 4.3E+02 0.0094 21.8 9.9 98 40-154 11-109 (201)
271 TIGR02931 anfK_nitrog Fe-only 22.9 7.4E+02 0.016 24.4 12.3 109 63-184 72-201 (461)
272 PF08418 Pol_alpha_B_N: DNA po 22.9 82 0.0018 28.2 3.1 49 249-298 9-60 (253)
273 COG0135 TrpF Phosphoribosylant 22.8 1.2E+02 0.0025 26.6 3.8 98 40-167 11-112 (208)
274 PLN00191 enolase 22.8 2.7E+02 0.0059 27.5 6.8 96 106-210 295-393 (457)
275 TIGR03597 GTPase_YqeH ribosome 22.8 6.6E+02 0.014 23.8 9.5 120 39-170 48-170 (360)
276 PRK04820 rnpA ribonuclease P; 22.8 4.3E+02 0.0093 21.6 7.1 64 82-154 48-114 (145)
277 PF00701 DHDPS: Dihydrodipicol 22.7 5.8E+02 0.013 23.1 12.6 120 39-175 19-153 (289)
278 PRK14460 ribosomal RNA large s 22.4 6.8E+02 0.015 23.8 9.8 101 118-219 207-335 (354)
279 cd08556 GDPD Glycerophosphodie 22.3 3.9E+02 0.0084 21.9 7.1 147 41-213 12-168 (189)
280 PF00148 Oxidored_nitro: Nitro 22.2 2.5E+02 0.0054 26.8 6.5 101 70-183 58-176 (398)
281 cd07937 DRE_TIM_PC_TC_5S Pyruv 22.1 3.4E+02 0.0073 24.6 7.0 100 106-210 18-136 (275)
282 TIGR01182 eda Entner-Doudoroff 22.1 2E+02 0.0042 25.1 5.1 87 108-210 19-106 (204)
283 TIGR00433 bioB biotin syntheta 22.0 5.9E+02 0.013 23.0 11.4 116 40-172 63-191 (296)
284 cd00668 Ile_Leu_Val_MetRS_core 21.9 1.2E+02 0.0027 28.0 4.1 49 108-159 81-131 (312)
285 PRK01492 rnpA ribonuclease P; 21.8 4E+02 0.0086 20.9 7.0 61 83-152 47-114 (118)
286 PF01244 Peptidase_M19: Membra 21.7 81 0.0018 29.5 2.9 107 42-164 160-271 (320)
287 PF13518 HTH_28: Helix-turn-he 21.7 1.1E+02 0.0024 19.4 2.8 22 254-276 14-35 (52)
288 PRK14462 ribosomal RNA large s 21.6 7.1E+02 0.015 23.7 9.3 89 131-219 225-341 (356)
289 cd00248 Mth938-like Mth938-lik 21.5 2E+02 0.0043 22.1 4.6 52 162-213 36-87 (109)
290 cd03313 enolase Enolase: Enola 21.3 7.6E+02 0.016 23.9 9.6 96 106-210 261-361 (408)
291 PRK14464 ribosomal RNA large s 21.2 4.4E+02 0.0095 25.0 7.6 82 139-220 223-321 (344)
292 COG1151 6Fe-6S prismane cluste 21.2 5.3E+02 0.011 26.2 8.3 98 109-208 360-463 (576)
293 PF01053 Cys_Met_Meta_PP: Cys/ 20.9 2E+02 0.0043 27.7 5.4 80 141-220 104-186 (386)
294 PRK05406 LamB/YcsF family prot 20.9 4.1E+02 0.009 23.9 6.9 81 25-122 13-95 (246)
295 COG2022 ThiG Uncharacterized e 20.9 4.9E+02 0.011 23.3 7.2 54 105-158 79-133 (262)
296 PRK11613 folP dihydropteroate 20.7 6.6E+02 0.014 23.0 10.2 99 107-212 36-140 (282)
297 TIGR01428 HAD_type_II 2-haloal 20.7 1.4E+02 0.0029 25.2 3.9 65 111-177 61-129 (198)
298 PF05368 NmrA: NmrA-like famil 20.5 2.2E+02 0.0048 24.6 5.3 96 111-217 10-106 (233)
299 TIGR02660 nifV_homocitr homoci 20.3 7.5E+02 0.016 23.5 9.8 39 39-79 20-60 (365)
300 PLN02522 ATP citrate (pro-S)-l 20.3 2E+02 0.0044 29.6 5.4 84 68-159 234-325 (608)
301 cd07939 DRE_TIM_NifV Streptomy 20.3 6.2E+02 0.013 22.5 13.4 39 39-78 17-56 (259)
302 PRK15005 universal stress prot 20.3 3.5E+02 0.0076 21.0 6.1 27 188-214 90-116 (144)
303 COG2109 BtuR ATP:corrinoid ade 20.2 5.7E+02 0.012 22.1 8.4 42 108-149 104-150 (198)
304 PRK14470 ribosomal RNA large s 20.1 4.6E+02 0.0099 24.7 7.5 89 130-218 208-324 (336)
305 PF05049 IIGP: Interferon-indu 20.1 2.3E+02 0.005 27.3 5.5 95 53-149 109-214 (376)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=5.6e-70 Score=505.57 Aligned_cols=306 Identities=42% Similarity=0.672 Sum_probs=273.7
Q ss_pred cCeeecCCCCcccCccccccccCcCCCCCCCCHHHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhcCC-CCCeE
Q 019147 9 VPRVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELP-RENIQ 87 (345)
Q Consensus 9 m~~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~-R~~~~ 87 (345)
|++|+||++|++||+||||||.+|+.+.. .+.+++.++|++|+++||||||||+.||.|.||+++|++|++.. |++++
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~~-~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~Rd~vv 79 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTDD-EEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGRRDKVV 79 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCCc-hhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCCCCeEE
Confidence 78999999999999999999999864222 24557888999999999999999999999999999999999844 89999
Q ss_pred EEeeccccccCcccc-ccCCCHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCCCc
Q 019147 88 VATKFGFVELGFTSV-IVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 166 (345)
Q Consensus 88 I~tK~~~~~~~~~~~-~~~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~ 166 (345)
|+||++.....+... ..+.++++|+++++.||+|||||||||||+||||...+.++++.+|.+|+++|+||+||+||++
T Consensus 80 IaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~~ 159 (316)
T COG0667 80 IATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNYS 159 (316)
T ss_pred EEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCC
Confidence 999999765421111 3568999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc-CCCceeccccCcccccccccchhHHHHhCCeEEeecCCCCcccCCCCccCCCCCcccccc-CCCCCCcc
Q 019147 167 PDTIRRAHAV-HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLKF-FPRFNGEN 244 (345)
Q Consensus 167 ~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~-~~~~~~~~ 244 (345)
++++.++++. .+++++|.+||+++|..+.+++++|+++||++++||||++|+|+|++... ..+.+.. .+.+..+.
T Consensus 160 ~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~---~~~~r~~~~~~~~~~~ 236 (316)
T COG0667 160 AEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPG---PEGSRASELPRFQREL 236 (316)
T ss_pred HHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCCC---cchhhccccccchhhh
Confidence 9999999999 59999999999999877777999999999999999999999999995443 1222222 25566677
Q ss_pred hhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCCeEecCCCCCHHhHHHhhcccCCCCCHHHHHHHHHhCCC
Q 019147 245 LDRNKSIYFRIENLAKKYKCTSAQLALAWVLAQGEDVVPIPGTTKIKNLDDNIGSLTVKLTKEDLKEISDAVPT 318 (345)
Q Consensus 245 ~~~~~~~~~~l~~la~~~g~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~enl~a~~~~Lt~e~~~~i~~~~~~ 318 (345)
.+...+.+..++++|+++|+|++|+||+|++++|.|++||+|+++++||++|+++++..|++++++.|++....
T Consensus 237 ~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~~~~~~~l~~~~~~ 310 (316)
T COG0667 237 TERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSEEELAALDEISAE 310 (316)
T ss_pred hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCCHHHHHHHHHHhhh
Confidence 88889999999999999999999999999999999999999999999999999999999999999999988754
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=7.7e-68 Score=481.93 Aligned_cols=316 Identities=44% Similarity=0.710 Sum_probs=281.0
Q ss_pred CCcCeeecCCCCcccCccccccccCcCCCCCCCCHHHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhc--CCCC
Q 019147 7 LQVPRVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE--LPRE 84 (345)
Q Consensus 7 ~~m~~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~--~~R~ 84 (345)
..|+++++|++|++||+||||||.+.. |+...++++|.++++.|+++|+||||||+.||+|.||.++|++|++ .+|+
T Consensus 10 ~~~~~~~lg~~gl~Vs~lglG~m~~~~-~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~R~ 88 (336)
T KOG1575|consen 10 LGMLRRKLGNSGLKVSPLGLGCMGWTT-FGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWRRD 88 (336)
T ss_pred hcceeeeccCCCceecceeecceeeec-cccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCcCC
Confidence 359999999999999999999985543 4444689999999999999999999999999999999999999998 5799
Q ss_pred CeEEEeeccccccCccccccCCCHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCC
Q 019147 85 NIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE 164 (345)
Q Consensus 85 ~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~ 164 (345)
+++|+||++.... +......+...+...++.||+|||++|||+||+||+|+..+.++++++|.+++++|+||+||+|+
T Consensus 89 ~vviaTK~~~~~~--~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiGlSe 166 (336)
T KOG1575|consen 89 KVVIATKFGFDYG--GETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWGLSE 166 (336)
T ss_pred cEEEEEEEeccCC--CcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEEecc
Confidence 9999999987652 22245678899999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHhhcCC--CceeccccCccccccc-ccchhHHHHhCCeEEeecCCCCcccCCCC-ccCCCCCccccc----c
Q 019147 165 ASPDTIRRAHAVHP--ITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRGFFGGKA-VVESVPLDSFLK----F 236 (345)
Q Consensus 165 ~~~~~l~~~~~~~~--~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~spl~~G~L~g~~-~~~~~~~~~~~~----~ 236 (345)
++++++.+++...+ +.++|++||++.|+.+ .+++++|+++||++++||||++|+|+|++ ..++.+.++.+. .
T Consensus 167 ~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e~~~~~~~~~~~~~~ 246 (336)
T KOG1575|consen 167 WSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGEDSRNGDKRFQFLGL 246 (336)
T ss_pred CCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCccccccccccccccccccc
Confidence 99999999999876 9999999999999854 56999999999999999999999999984 334455444322 1
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCCeEecCCCCCHHhHHHhhcccCCCCCHHHHHHHHHhC
Q 019147 237 FPRFNGENLDRNKSIYFRIENLAKKYKCTSAQLALAWVLAQGEDVVPIPGTTKIKNLDDNIGSLTVKLTKEDLKEISDAV 316 (345)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~enl~a~~~~Lt~e~~~~i~~~~ 316 (345)
.+.+... ..++..++++.++|+++|+|++|+||+|+++++.+++||||+++.+||+||++|+...|+++++.+|++..
T Consensus 247 ~~~~~~~--~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~~~Lt~e~~~~l~~~~ 324 (336)
T KOG1575|consen 247 SPQTEEG--DKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALSVKLTPEEIKELEEII 324 (336)
T ss_pred ccccchh--hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhhccCCHHHHHHHHHhh
Confidence 2222222 56788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCh
Q 019147 317 PTEEVAGDRYP 327 (345)
Q Consensus 317 ~~~~~~~~~~~ 327 (345)
+.....+++|.
T Consensus 325 ~~~~~~~~~~~ 335 (336)
T KOG1575|consen 325 DKILGFGPRSI 335 (336)
T ss_pred ccccCcCCCCC
Confidence 99888888875
No 3
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=7e-63 Score=461.15 Aligned_cols=298 Identities=29% Similarity=0.459 Sum_probs=251.1
Q ss_pred eeecCCCCcccCccccccccCcCCCCCCCCHHHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhc--CCCCCeEE
Q 019147 11 RVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE--LPRENIQV 88 (345)
Q Consensus 11 ~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~--~~R~~~~I 88 (345)
||+||+||++||+||||||++ ||...+.+++.++|+.|+++|||+||||+.||.|.||+++|++|+. ..|++++|
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~---~g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~~~~i 77 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVT---FGGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRSSYVI 77 (317)
T ss_pred CcccCCCCCeecceeecCCcc---CCCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcccEEE
Confidence 578999999999999999974 2333477889999999999999999999999999999999999985 36999999
Q ss_pred EeeccccccCccccccCCCHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHH
Q 019147 89 ATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPD 168 (345)
Q Consensus 89 ~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~ 168 (345)
+||++..... ....+.+++.+++++++||+||||||||+|++|||+...+++++|++|++|+++||||+||+|||+++
T Consensus 78 aTK~~~~~~~--~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~~ 155 (317)
T TIGR01293 78 TTKIFWGGKA--ETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSSM 155 (317)
T ss_pred EeeeccCCCC--CCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHH
Confidence 9998642110 01134689999999999999999999999999999988889999999999999999999999999999
Q ss_pred HHHHHhhc------CCCceeccccCcccccc-cccchhHHHHhCCeEEeecCCCCcccCCCCccCCCCCccccccCCC--
Q 019147 169 TIRRAHAV------HPITAVQLEWSLWARDI-ENEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLKFFPR-- 239 (345)
Q Consensus 169 ~l~~~~~~------~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~-- 239 (345)
++.++... .+++++|++||++++.. +.+++++|+++||++++|+||++|+|++++... .+.+. +...+.
T Consensus 156 ~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~-~~~~~-~~~~~~~~ 233 (317)
T TIGR01293 156 EIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSG-IPPYS-RATLKGYQ 233 (317)
T ss_pred HHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCC-CCCcc-cccccccc
Confidence 98776432 46789999999999874 568999999999999999999999999985322 22221 111010
Q ss_pred -CC----CcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCCeEecCCCCCHHhHHHhhcccCC--CCCHHHHHHH
Q 019147 240 -FN----GENLDRNKSIYFRIENLAKKYKCTSAQLALAWVLAQGEDVVPIPGTTKIKNLDDNIGSLTV--KLTKEDLKEI 312 (345)
Q Consensus 240 -~~----~~~~~~~~~~~~~l~~la~~~g~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~enl~a~~~--~Lt~e~~~~i 312 (345)
+. .+........++.+.++|+++|+|++|+||+|++++|.|+++|+|+++++|+++|+++++. +||++++++|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~~Ls~e~~~~l 313 (317)
T TIGR01293 234 WLKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSLQVLPKLSSSIIHEI 313 (317)
T ss_pred hhhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHhhccCCCCHHHHHHH
Confidence 11 1122335667788999999999999999999999999999999999999999999999987 9999999999
Q ss_pred HHh
Q 019147 313 SDA 315 (345)
Q Consensus 313 ~~~ 315 (345)
+++
T Consensus 314 ~~~ 316 (317)
T TIGR01293 314 DSI 316 (317)
T ss_pred Hhh
Confidence 875
No 4
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=1.4e-62 Score=463.77 Aligned_cols=313 Identities=27% Similarity=0.484 Sum_probs=257.7
Q ss_pred CCcc-ccCCcCeeecCCCCcccCccccccccCcCCCCCCCCHHHHHHHHHHHHHCCCCeeecCCCCCC--CcHHHHHHHH
Q 019147 1 MAED-KKLQVPRVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGP--YTNEILLGKA 77 (345)
Q Consensus 1 m~~~-~~~~m~~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~--G~sE~~lG~a 77 (345)
|+.+ ....|++|+||+||++||+||||||+. ||...+.+++.++|+.|+++|||+||||+.||. |.||+.+|++
T Consensus 4 ~~~~~~~~~m~~r~lg~tg~~vs~lglG~~~~---~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~ 80 (346)
T PRK09912 4 LANPERYGQMQYRYCGKSGLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRL 80 (346)
T ss_pred eccCCCCCCcceeecCCCCcccccccccCccc---cCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHH
Confidence 4443 334599999999999999999999972 333335678899999999999999999999995 8999999999
Q ss_pred HhcC---CCCCeEEEeeccccccCccccccCCCHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHc
Q 019147 78 LKEL---PRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEE 154 (345)
Q Consensus 78 l~~~---~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~ 154 (345)
|++. .|++++|+||++..... +....+.+++++++++++||+||||||||+|++|||+...+++++|++|++|+++
T Consensus 81 l~~~~~~~Rd~~~I~TK~g~~~~~-~~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~ 159 (346)
T PRK09912 81 LREDFAAYRDELIISTKAGYDMWP-GPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQS 159 (346)
T ss_pred HHhcccCCCCeEEEEEEecccCCC-CcCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHc
Confidence 9862 59999999999753111 1111346799999999999999999999999999999888899999999999999
Q ss_pred CCcceEecCCCcHHHHHHHhhc-----CCCceeccccCccccccc-ccchhHHHHhCCeEEeecCCCCcccCCCCccCCC
Q 019147 155 GKIKYIGLSEASPDTIRRAHAV-----HPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESV 228 (345)
Q Consensus 155 G~ir~iGvS~~~~~~l~~~~~~-----~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~ 228 (345)
||||+||||||++++++++.+. .+++++|++||++++..+ .+++++|+++||++++|+||++|+|++++... .
T Consensus 160 GkIr~iGvSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~~~-~ 238 (346)
T PRK09912 160 GKALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNG-I 238 (346)
T ss_pred CCeeEEEecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCCCCCC-C
Confidence 9999999999999988765442 367899999999998654 47999999999999999999999999975322 1
Q ss_pred CCccccc----cCCCCCCcch-hhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCCeEecCCCCCHHhHHHhhccc-CC
Q 019147 229 PLDSFLK----FFPRFNGENL-DRNKSIYFRIENLAKKYKCTSAQLALAWVLAQGEDVVPIPGTTKIKNLDDNIGSL-TV 302 (345)
Q Consensus 229 ~~~~~~~----~~~~~~~~~~-~~~~~~~~~l~~la~~~g~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~enl~a~-~~ 302 (345)
+.+.... ..+.+.+..+ +...+..+.+.++|+++|+|++|+||+|++++|.|++||+|+++++||++|++++ .+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~ 318 (346)
T PRK09912 239 PQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENVQALNNL 318 (346)
T ss_pred CCCccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHhhhcCC
Confidence 2111000 0011111111 3445677899999999999999999999999999999999999999999999998 48
Q ss_pred CCCHHHHHHHHHhCCC
Q 019147 303 KLTKEDLKEISDAVPT 318 (345)
Q Consensus 303 ~Lt~e~~~~i~~~~~~ 318 (345)
+|+++++++|+++.+.
T Consensus 319 ~L~~e~~~~l~~~~~~ 334 (346)
T PRK09912 319 TFSTEELAQIDQHIAD 334 (346)
T ss_pred CCCHHHHHHHHHhhCc
Confidence 9999999999998865
No 5
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=3.5e-62 Score=461.70 Aligned_cols=305 Identities=27% Similarity=0.364 Sum_probs=254.0
Q ss_pred cCeeecCCCCcccCccccccccCcCCCCCCCCHHHHHHHHHHHHHCCCCeeecCCCCC-------CCcHHHHHHHHHhc-
Q 019147 9 VPRVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYG-------PYTNEILLGKALKE- 80 (345)
Q Consensus 9 m~~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg-------~G~sE~~lG~al~~- 80 (345)
|+||+||+||++||+||||||+||+ ..+.+++.++|+.|+++|||+||||+.|| .|.||..+|++|+.
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~----~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~ 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGE----QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCC----CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc
Confidence 7899999999999999999999864 23678899999999999999999999998 48899999999985
Q ss_pred CCCCCeEEEeeccccccCccc---cccCCCHHHHHHHHHHHHhhcCCCceeEEEeecCCC-----------------CCC
Q 019147 81 LPRENIQVATKFGFVELGFTS---VIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDT-----------------SVP 140 (345)
Q Consensus 81 ~~R~~~~I~tK~~~~~~~~~~---~~~~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~-----------------~~~ 140 (345)
..|++++|+||++........ ...+.+++.+++++++||+||||||||+|++|||+. ..+
T Consensus 77 ~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T PRK10625 77 GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVS 156 (346)
T ss_pred CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCC
Confidence 359999999998632110000 012468999999999999999999999999999964 246
Q ss_pred HHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhhc------CCCceeccccCcccccccccchhHHHHhCCeEEeecCC
Q 019147 141 IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV------HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPL 214 (345)
Q Consensus 141 ~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~------~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl 214 (345)
++++|++|++|+++||||+||+|||+.+++++++.. ..+.++|++||++++..+.+++++|+++||++++|+||
T Consensus 157 ~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL 236 (346)
T PRK10625 157 LLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCL 236 (346)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccc
Confidence 789999999999999999999999999988775431 35788999999999876668999999999999999999
Q ss_pred CCcccCCCCccCCCCCccccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCCeEecCCCCCHHhHH
Q 019147 215 GRGFFGGKAVVESVPLDSFLKFFPRFNGENLDRNKSIYFRIENLAKKYKCTSAQLALAWVLAQGEDVVPIPGTTKIKNLD 294 (345)
Q Consensus 215 ~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~ 294 (345)
++|+|++++.....+.+......+.|.....+...+..+.+.++|+++|+|++|+||+|++++|.|+++|+|+++++||+
T Consensus 237 ~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~~l~ 316 (346)
T PRK10625 237 AFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTMEQLK 316 (346)
T ss_pred cCeeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHHHHH
Confidence 99999998533222221110011112211224456678899999999999999999999999999999999999999999
Q ss_pred HhhcccCCCCCHHHHHHHHHhCC
Q 019147 295 DNIGSLTVKLTKEDLKEISDAVP 317 (345)
Q Consensus 295 enl~a~~~~Lt~e~~~~i~~~~~ 317 (345)
+|+++++++|+++++++|+++.+
T Consensus 317 en~~a~~~~L~~~~~~~l~~~~~ 339 (346)
T PRK10625 317 TNIESLHLTLSEEVLAEIEAVHQ 339 (346)
T ss_pred HHHhhccCCCCHHHHHHHHHHHh
Confidence 99999999999999999999874
No 6
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=8.5e-62 Score=434.65 Aligned_cols=257 Identities=31% Similarity=0.518 Sum_probs=230.6
Q ss_pred cCeeecCCCCcccCccccccccCcCCCCCCCCHHHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhc--CCCCCe
Q 019147 9 VPRVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE--LPRENI 86 (345)
Q Consensus 9 m~~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~--~~R~~~ 86 (345)
+.+.+| ++|.+||.||||||++++ .+.+.+.+.+|++.|+|+||||..|| ||+.+|+++++ .+|+++
T Consensus 3 ~~~~~l-~~g~~iP~iGlGt~~~~~-------~~~~~~av~~Al~~Gyr~IDTA~~Yg---nE~~VG~aI~~s~v~Reel 71 (280)
T COG0656 3 KTKVTL-NNGVEIPAIGLGTWQIGD-------DEWAVRAVRAALELGYRLIDTAEIYG---NEEEVGEAIKESGVPREEL 71 (280)
T ss_pred Cceeec-CCCCcccCcceEeeecCC-------chhHHHHHHHHHHhCcceEecHhHhc---CHHHHHHHHHhcCCCHHHe
Confidence 455677 677889999999999753 23388999999999999999999999 99999999998 689999
Q ss_pred EEEeeccccccCccccccCCCHHHHHHHHHHHHhhcCCCceeEEEeecCCCC--CCHHHHHHHHHHHHHcCCcceEecCC
Q 019147 87 QVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS--VPIEETIGEMKKLVEEGKIKYIGLSE 164 (345)
Q Consensus 87 ~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~--~~~~~~~~~l~~l~~~G~ir~iGvS~ 164 (345)
||+||++... .+++.+.+++++||++||+||||||+||||.+. ..+.++|++|++++++|+||+|||||
T Consensus 72 FittKvw~~~---------~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSN 142 (280)
T COG0656 72 FITTKVWPSD---------LGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSN 142 (280)
T ss_pred EEEeecCCcc---------CCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeC
Confidence 9999999754 458899999999999999999999999999752 33789999999999999999999999
Q ss_pred CcHHHHHHHhhc--CCCceeccccCcccccccccchhHHHHhCCeEEeecCCCCcc-cCCCCccCCCCCccccccCCCCC
Q 019147 165 ASPDTIRRAHAV--HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGF-FGGKAVVESVPLDSFLKFFPRFN 241 (345)
Q Consensus 165 ~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~-L~g~~~~~~~~~~~~~~~~~~~~ 241 (345)
|+.++++++++. ..|+++|++||++.+.. ++++||+++||.++|||||++|. |.. .
T Consensus 143 F~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~--el~~~~~~~gI~v~AysPL~~g~~l~~---------------~---- 201 (280)
T COG0656 143 FGVEHLEELLSLAKVKPAVNQIEYHPYLRQP--ELLPFCQRHGIAVEAYSPLAKGGKLLD---------------N---- 201 (280)
T ss_pred CCHHHHHHHHHhcCCCCceEEEEeccCCCcH--HHHHHHHHcCCEEEEECCccccccccc---------------C----
Confidence 999999999877 45899999999999964 59999999999999999999643 211 1
Q ss_pred CcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCCeEecCCCCCHHhHHHhhcccCCCCCHHHHHHHHHhCCCC
Q 019147 242 GENLDRNKSIYFRIENLAKKYKCTSAQLALAWVLAQGEDVVPIPGTTKIKNLDDNIGSLTVKLTKEDLKEISDAVPTE 319 (345)
Q Consensus 242 ~~~~~~~~~~~~~l~~la~~~g~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~enl~a~~~~Lt~e~~~~i~~~~~~~ 319 (345)
+.+.+||++||.|++|++|+|+++++. +|||.+++++|++||++++++.||+|||+.|+++....
T Consensus 202 -----------~~l~~Ia~k~g~t~AQv~L~W~i~~gv--~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~ 266 (280)
T COG0656 202 -----------PVLAEIAKKYGKTPAQVALRWHIQRGV--IVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGY 266 (280)
T ss_pred -----------hHHHHHHHHhCCCHHHHHHHHHHhCCc--EEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhcccc
Confidence 289999999999999999999999995 89999999999999999999999999999999999754
No 7
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=5e-60 Score=441.48 Aligned_cols=286 Identities=28% Similarity=0.458 Sum_probs=245.5
Q ss_pred eeecCCCCcccCccccccccCcCCCCCCCCHHHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhc--CCCCCeEE
Q 019147 11 RVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE--LPRENIQV 88 (345)
Q Consensus 11 ~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~--~~R~~~~I 88 (345)
||+||+||++||.||||||++|+.|+. .+.+++.++|+.|+++|||+||||+.||.|.||+.+|++|+. ..|++++|
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~-~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~~v~I 79 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGP-VSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPREKYVV 79 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCC-CCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcceEEE
Confidence 688999999999999999999876764 477899999999999999999999999999999999999987 46999999
Q ss_pred EeeccccccCccccccCCCHHHHHHHHHHHHhhcCCCceeEEEeecCCCC---CCHHHHHHHHHHHHHcCCcceEecCCC
Q 019147 89 ATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS---VPIEETIGEMKKLVEEGKIKYIGLSEA 165 (345)
Q Consensus 89 ~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~---~~~~~~~~~l~~l~~~G~ir~iGvS~~ 165 (345)
+||++.... ..+.+++.+++++++||++||+||||+|++|||+.. .+++++|++|++|+++||||+||+|||
T Consensus 80 ~TK~~~~~~-----~~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~ 154 (314)
T PLN02587 80 STKCGRYGE-----GFDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGL 154 (314)
T ss_pred EeccccCCC-----CCCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 999984321 124679999999999999999999999999999642 346789999999999999999999999
Q ss_pred cHHHHHHHhhc---C--CCceeccccCcccccccccchhHHHHhCCeEEeecCCCCcccCCCCccCCCCCccccccCCCC
Q 019147 166 SPDTIRRAHAV---H--PITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLKFFPRF 240 (345)
Q Consensus 166 ~~~~l~~~~~~---~--~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~ 240 (345)
++++++.+... . .+..+|+.||+.++.. .+++++|+++||++++|+||++|+|+++..+. +
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~-------------~ 220 (314)
T PLN02587 155 PLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGLLTENGPPE-------------W 220 (314)
T ss_pred CHHHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccccCCCCCCC-------------C
Confidence 99988776653 2 2333578899887643 48999999999999999999999999863111 1
Q ss_pred CCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCCeEecCCCCCHHhHHHhhcccC----CCCCHHHHHHHHHhC
Q 019147 241 NGENLDRNKSIYFRIENLAKKYKCTSAQLALAWVLAQGEDVVPIPGTTKIKNLDDNIGSLT----VKLTKEDLKEISDAV 316 (345)
Q Consensus 241 ~~~~~~~~~~~~~~l~~la~~~g~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~enl~a~~----~~Lt~e~~~~i~~~~ 316 (345)
.. ..+......+.++++|+++|+|++|+||+|++++|.|++||+|+++++|+++|++++. .+|+++++++|+++.
T Consensus 221 ~~-~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~ 299 (314)
T PLN02587 221 HP-APPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEAIL 299 (314)
T ss_pred CC-CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHhh
Confidence 00 1134556677899999999999999999999999999999999999999999999976 379999999999988
Q ss_pred C
Q 019147 317 P 317 (345)
Q Consensus 317 ~ 317 (345)
+
T Consensus 300 ~ 300 (314)
T PLN02587 300 A 300 (314)
T ss_pred c
Confidence 5
No 8
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=3.4e-58 Score=423.87 Aligned_cols=280 Identities=40% Similarity=0.644 Sum_probs=249.7
Q ss_pred eeecCCCCcccCccccccccCcCCCCCCCCHHHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhcCC-CCCeEEE
Q 019147 11 RVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELP-RENIQVA 89 (345)
Q Consensus 11 ~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~-R~~~~I~ 89 (345)
+|+||+||+.||+||||||.++..| .+.+++.++++.|++.|||+||||+.||.|.||+.+|++|++.. |++++|+
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~---~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~ 77 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGY---VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIA 77 (285)
T ss_pred CcccCCCCceecCcceeccccCCCC---CCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEE
Confidence 5789999999999999999987655 36789999999999999999999999999999999999999854 9999999
Q ss_pred eeccccccCccccccCCCHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCC-HHHHHHHHHHHHHcCCcceEecCCCcHH
Q 019147 90 TKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVP-IEETIGEMKKLVEEGKIKYIGLSEASPD 168 (345)
Q Consensus 90 tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~-~~~~~~~l~~l~~~G~ir~iGvS~~~~~ 168 (345)
||++..... ..+.+++.+++++++||++||+||||+|+||||+.... ..++|++|++++++|+||+||||||+.+
T Consensus 78 tK~~~~~~~----~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~ 153 (285)
T cd06660 78 TKVGPRPGD----GRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAE 153 (285)
T ss_pred eeecCCCCC----CCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHH
Confidence 999865321 14578999999999999999999999999999988765 8899999999999999999999999999
Q ss_pred HHHHHhhc--CCCceeccccCcccccccccchhHHHHhCCeEEeecCCCCcccCCCCccCCCCCccccccCCCCCCcchh
Q 019147 169 TIRRAHAV--HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLKFFPRFNGENLD 246 (345)
Q Consensus 169 ~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (345)
.+.+++.. .+|+++|++||++++..+.+++++|+++||++++|+||++|.|+++......+.
T Consensus 154 ~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~---------------- 217 (285)
T cd06660 154 QLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPP---------------- 217 (285)
T ss_pred HHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCCCCC----------------
Confidence 99999888 899999999999999765579999999999999999999999987632211100
Q ss_pred hhHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCCeEecCCCCCHHhHHHhhcccCCCCCHHHHHHHHH
Q 019147 247 RNKSIYFRIENLAKKYKCTSAQLALAWVLAQGEDVVPIPGTTKIKNLDDNIGSLTVKLTKEDLKEISD 314 (345)
Q Consensus 247 ~~~~~~~~l~~la~~~g~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~enl~a~~~~Lt~e~~~~i~~ 314 (345)
.......+..++++++++++|+||+|++++|.+++||+|+++++|+++|+++..++|++++++.|++
T Consensus 218 -~~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~ 284 (285)
T cd06660 218 -EGDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDA 284 (285)
T ss_pred -hhhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhh
Confidence 0114568999999999999999999999999999999999999999999999999999999999986
No 9
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=2e-57 Score=419.11 Aligned_cols=272 Identities=28% Similarity=0.492 Sum_probs=235.7
Q ss_pred eecCCCCcccCccccccccCcC--CCCCCCCHHHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEE
Q 019147 12 VKLGTQGLEVSKLGYGCMSLSG--CYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVA 89 (345)
Q Consensus 12 ~~lg~tg~~vs~lglG~~~~g~--~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~ 89 (345)
++|+ |++||+||||||++|+ .||...+++++.++|+.|+++|||+||||+.||.|.+|+.+|++++. .|++++|+
T Consensus 10 ~~l~--g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~-~R~~~~i~ 86 (290)
T PRK10376 10 FTLG--GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP-YPDDLTIV 86 (290)
T ss_pred eecC--CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc-CCCeEEEE
Confidence 3453 9999999999999985 46765577889999999999999999999999999999999999975 69999999
Q ss_pred eeccccccCccccccCCCHHHHHHHHHHHHhhcCCCceeEEEeecCCC-----CCCHHHHHHHHHHHHHcCCcceEecCC
Q 019147 90 TKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDT-----SVPIEETIGEMKKLVEEGKIKYIGLSE 164 (345)
Q Consensus 90 tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~-----~~~~~~~~~~l~~l~~~G~ir~iGvS~ 164 (345)
||++...........+.+++.+++++++||+||||||||+|++|+++. ..+++++|++|++|+++||||+|||||
T Consensus 87 TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gkir~iGvSn 166 (290)
T PRK10376 87 TKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLVRHIGLSN 166 (290)
T ss_pred eeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCceeEEEecC
Confidence 999754321111123568999999999999999999999999988521 234789999999999999999999999
Q ss_pred CcHHHHHHHhhcCCCceeccccCcccccccccchhHHHHhCCeEEeecCCCCcccCCCCccCCCCCccccccCCCCCCcc
Q 019147 165 ASPDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLKFFPRFNGEN 244 (345)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~ 244 (345)
|+.++++++.+..+++++|++||++++.. .+++++|+++||++++|+||+++. + +
T Consensus 167 ~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~~~~~~~~~gi~v~a~~pL~g~~-------------------~-~---- 221 (290)
T PRK10376 167 VTPTQVAEARKIAEIVCVQNHYNLAHRAD-DALIDALARDGIAYVPFFPLGGFT-------------------P-L---- 221 (290)
T ss_pred CCHHHHHHHHhhCCeEEEecccCCCcCCh-HHHHHHHHHcCCEEEEeecCCCCC-------------------h-h----
Confidence 99999999988888999999999998763 579999999999999999997321 0 0
Q ss_pred hhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCCeEecCCCCCHHhHHHhhcccCCCCCHHHHHHHHHhCC
Q 019147 245 LDRNKSIYFRIENLAKKYKCTSAQLALAWVLAQGEDVVPIPGTTKIKNLDDNIGSLTVKLTKEDLKEISDAVP 317 (345)
Q Consensus 245 ~~~~~~~~~~l~~la~~~g~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~enl~a~~~~Lt~e~~~~i~~~~~ 317 (345)
..+.+.++|+++|+|++|+||+|+++++.++++|+|+++++|+++|+++++++|++++++.|+++.+
T Consensus 222 ------~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~ 288 (290)
T PRK10376 222 ------QSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIAR 288 (290)
T ss_pred ------hhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHh
Confidence 0247899999999999999999999987667899999999999999999999999999999998764
No 10
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=2.8e-57 Score=405.41 Aligned_cols=259 Identities=31% Similarity=0.480 Sum_probs=231.8
Q ss_pred eeecCCCCcccCccccccccCcCCCCCCCCHHHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhc------CCCC
Q 019147 11 RVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE------LPRE 84 (345)
Q Consensus 11 ~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~------~~R~ 84 (345)
+.+| ++|.++|.||||||+. ++.++.+.++.|++.||++||||..|+ +|+.+|++|++ ..|+
T Consensus 6 ~~~L-n~G~~mP~iGlGTw~~--------~~~~~~~aV~~Al~~GYRHIDtA~~Y~---NE~evG~aik~~i~~~~v~Re 73 (300)
T KOG1577|consen 6 TVKL-NNGFKMPIIGLGTWQS--------PPGQVAEAVKAAIKAGYRHIDTAHVYG---NEKEVGEAIKELLAEGGVKRE 73 (300)
T ss_pred eEec-cCCCccceeeeEeccc--------ChhhHHHHHHHHHHhCcceeechhhhC---ChHHHHHHHHHHhhhCCcchh
Confidence 6788 8999999999999983 568899999999999999999999999 89999999996 5899
Q ss_pred CeEEEeeccccccCccccccCCCHHHHHHHHHHHHhhcCCCceeEEEeecCCCC----------------CCHHHHHHHH
Q 019147 85 NIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS----------------VPIEETIGEM 148 (345)
Q Consensus 85 ~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~----------------~~~~~~~~~l 148 (345)
++||+||+|+.. +.++.++.++++||++||+||+|+|++|||-.. .+..++|++|
T Consensus 74 diFiTSKlw~~~---------~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~am 144 (300)
T KOG1577|consen 74 DIFITSKLWPTD---------HAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAM 144 (300)
T ss_pred hheeeeccCccc---------cChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHH
Confidence 999999999754 468999999999999999999999999999543 3467899999
Q ss_pred HHHHHcCCcceEecCCCcHHHHHHHhhc--CCCceeccccCcccccccccchhHHHHhCCeEEeecCCCCcccCCCCccC
Q 019147 149 KKLVEEGKIKYIGLSEASPDTIRRAHAV--HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGFFGGKAVVE 226 (345)
Q Consensus 149 ~~l~~~G~ir~iGvS~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~ 226 (345)
++++++|++|+||||||+..++++++.. .+|.++|+++|++.++ .++++||+++||.|.|||||+++-- +.
T Consensus 145 E~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q--~~L~~fCk~~~I~v~AYSpLg~~~~-~~---- 217 (300)
T KOG1577|consen 145 EKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQ--KKLVEFCKSKGIVVTAYSPLGSPGR-GS---- 217 (300)
T ss_pred HHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcCh--HHHHHHHhhCCcEEEEecCCCCCCC-cc----
Confidence 9999999999999999999999999887 6789999999998875 6799999999999999999997531 00
Q ss_pred CCCCccccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCCeEecCCCCCHHhHHHhhcccCCCCCH
Q 019147 227 SVPLDSFLKFFPRFNGENLDRNKSIYFRIENLAKKYKCTSAQLALAWVLAQGEDVVPIPGTTKIKNLDDNIGSLTVKLTK 306 (345)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~enl~a~~~~Lt~ 306 (345)
+.. .-+.+.+||++||.|++|++|||+++++. +|||.++|+++++||++++++.||+
T Consensus 218 -----------~ll----------~~~~l~~iA~K~~kt~aQIlLrw~~q~g~--~vipKS~~~~Ri~eN~~vfdf~Lt~ 274 (300)
T KOG1577|consen 218 -----------DLL----------EDPVLKEIAKKYNKTPAQILLRWALQRGV--SVIPKSSNPERIKENFKVFDFELTE 274 (300)
T ss_pred -----------ccc----------cCHHHHHHHHHhCCCHHHHHHHHHHhCCc--EEEeccCCHHHHHHHHhhccccCCH
Confidence 000 11389999999999999999999999998 9999999999999999999999999
Q ss_pred HHHHHHHHhCCCCc
Q 019147 307 EDLKEISDAVPTEE 320 (345)
Q Consensus 307 e~~~~i~~~~~~~~ 320 (345)
+|++.|+......+
T Consensus 275 ed~~~i~~~~~~~r 288 (300)
T KOG1577|consen 275 EDMKKLDSLNSNER 288 (300)
T ss_pred HHHHHHhhccccce
Confidence 99999998886554
No 11
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=3.5e-57 Score=416.66 Aligned_cols=276 Identities=36% Similarity=0.569 Sum_probs=232.9
Q ss_pred ccccccccCcCCCCCCCCHHHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhc--CCCCCeEEEeeccccccCcc
Q 019147 23 KLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE--LPRENIQVATKFGFVELGFT 100 (345)
Q Consensus 23 ~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~--~~R~~~~I~tK~~~~~~~~~ 100 (345)
+||||||++++. ..+.+++.++|+.|++.|||+||||+.||+|.||+.+|++|+. .+|++++|+||+... .
T Consensus 1 ~l~lG~~~~~~~---~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~----~ 73 (283)
T PF00248_consen 1 PLGLGTWRLGGE---RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVYGD----G 73 (283)
T ss_dssp SBEEECTTBTTT---TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEESS----S
T ss_pred CEEEEccccCCC---CCCHHHHHHHHHHHHHcCCCeecccccccccccccccccccccccccccccccccccccc----c
Confidence 589999998753 4589999999999999999999999999999999999999998 789999999999221 1
Q ss_pred ccccCCCHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCC-HHHHHHHHHHHHHcCCcceEecCCCcHHHHHHH--hhcC
Q 019147 101 SVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVP-IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRA--HAVH 177 (345)
Q Consensus 101 ~~~~~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~-~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~--~~~~ 177 (345)
....+.+++.+++++++||++||+||||+|++|||+.... ..++|++|++|+++|+||+||||||+++.++++ ....
T Consensus 74 ~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 153 (283)
T PF00248_consen 74 KPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSI 153 (283)
T ss_dssp STGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS
T ss_pred cccccccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccccccccccccccccccccccc
Confidence 2245678999999999999999999999999999999888 899999999999999999999999999999999 5557
Q ss_pred CCceeccccCcccccccccchhHHHHhCCeEEeecCCCCcccCCCCccCCC-CCccccccCCCCCCcchhhhHHHHHHHH
Q 019147 178 PITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESV-PLDSFLKFFPRFNGENLDRNKSIYFRIE 256 (345)
Q Consensus 178 ~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 256 (345)
+|+++|++||++++....+++++|+++||++++|+||++|+|+++...... +.... ........+.+.
T Consensus 154 ~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~ 222 (283)
T PF00248_consen 154 PPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRAS-----------LRDAQELADALR 222 (283)
T ss_dssp -ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSG-----------SSTHGGGHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccCccccccccCCCcccccc-----------cchhhhhhhhhh
Confidence 899999999999776678999999999999999999999999987432211 11000 001345567899
Q ss_pred HHHHHcCCCHHHHHHHHHHhcCCCeEecCCCCCHHhHHHhhcccCCCCCHHHHHHHHHhC
Q 019147 257 NLAKKYKCTSAQLALAWVLAQGEDVVPIPGTTKIKNLDDNIGSLTVKLTKEDLKEISDAV 316 (345)
Q Consensus 257 ~la~~~g~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~enl~a~~~~Lt~e~~~~i~~~~ 316 (345)
++++++|+|++|+||+|+++++.+.+||+|+++++|+++|+++++++||++++++|+++.
T Consensus 223 ~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 223 ELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp HHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999874
No 12
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=1.1e-55 Score=402.76 Aligned_cols=245 Identities=28% Similarity=0.422 Sum_probs=220.1
Q ss_pred ccCccccccccCcCCCCCCCCHHHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhc--CCCCCeEEEeecccccc
Q 019147 20 EVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE--LPRENIQVATKFGFVEL 97 (345)
Q Consensus 20 ~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~--~~R~~~~I~tK~~~~~~ 97 (345)
+||.||||||+++ .+++.++++.|++.|||+||||+.|| +|..+|++|++ ..|++++|+||++..
T Consensus 2 ~vs~lglGt~~~~--------~~~~~~~i~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~v~i~TK~~~~-- 68 (267)
T PRK11172 2 SIPAFGLGTFRLK--------DQVVIDSVKTALELGYRAIDTAQIYD---NEAAVGQAIAESGVPRDELFITTKIWID-- 68 (267)
T ss_pred CCCCEeeEccccC--------hHHHHHHHHHHHHcCCCEEEccchhC---CHHHHHHHHHHcCCChhHeEEEEEeCCC--
Confidence 6999999999863 36799999999999999999999999 79999999985 469999999998532
Q ss_pred CccccccCCCHHHHHHHHHHHHhhcCCCceeEEEeecCCCC--CCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhh
Q 019147 98 GFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS--VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHA 175 (345)
Q Consensus 98 ~~~~~~~~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~--~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~ 175 (345)
..+++.+++++++||+|||+||||+|++|||++. .+.+++|++|++|+++||||+||||||+.++++++++
T Consensus 69 -------~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~ 141 (267)
T PRK11172 69 -------NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIA 141 (267)
T ss_pred -------CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHH
Confidence 2568999999999999999999999999999763 5678999999999999999999999999999988876
Q ss_pred c---CCCceeccccCcccccccccchhHHHHhCCeEEeecCCCCcccCCCCccCCCCCccccccCCCCCCcchhhhHHHH
Q 019147 176 V---HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLKFFPRFNGENLDRNKSIY 252 (345)
Q Consensus 176 ~---~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (345)
. .+++++|++||++++. .+++++|+++||++++|+||++|.+...
T Consensus 142 ~~~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G~~~~~------------------------------ 189 (267)
T PRK11172 142 AVGAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYGKVLKD------------------------------ 189 (267)
T ss_pred hcCCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCCCCcccCC------------------------------
Confidence 4 3689999999999874 5899999999999999999999854311
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhcCCCeEecCCCCCHHhHHHhhcccCCCCCHHHHHHHHHhCCC
Q 019147 253 FRIENLAKKYKCTSAQLALAWVLAQGEDVVPIPGTTKIKNLDDNIGSLTVKLTKEDLKEISDAVPT 318 (345)
Q Consensus 253 ~~l~~la~~~g~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~enl~a~~~~Lt~e~~~~i~~~~~~ 318 (345)
+.+.++|+++|+|++|+||+|+++++. +||+|+++++|+++|+++++++||++++++|+++.+.
T Consensus 190 ~~l~~~a~~~~~s~aqval~w~l~~~~--~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~ 253 (267)
T PRK11172 190 PVIARIAAKHNATPAQVILAWAMQLGY--SVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDRN 253 (267)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCC--EeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccC
Confidence 268899999999999999999999975 6999999999999999999999999999999999854
No 13
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=1.3e-55 Score=406.47 Aligned_cols=269 Identities=19% Similarity=0.227 Sum_probs=229.3
Q ss_pred CcccCccccccccCcCC-------CCCCCCHHHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEe
Q 019147 18 GLEVSKLGYGCMSLSGC-------YNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVAT 90 (345)
Q Consensus 18 g~~vs~lglG~~~~g~~-------~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~t 90 (345)
+++||+||||||++|+. |+. ++.+++.++|+.|+++|||+||||+.||. ||..+|++|+...+++++|+|
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~-~~~~ea~~~l~~A~~~Gin~~DTA~~YG~--SE~~lG~al~~~~~~~~~i~t 78 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGR-TPEAEARDILNIAARAGLSVLDASGLFGR--AETVLGQLIPRPVPFRVTLST 78 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCC-CCHHHHHHHHHHHHHcCCCEEecchhhhh--HHHHHhhhhccCCceEeeccc
Confidence 67899999999999863 444 48899999999999999999999999974 999999999852346788999
Q ss_pred eccccccCccccccCCCHHHHHHHHHHHHhhcCCCceeEEEeecCCCC-CCH-HHHHHHHHHHHHcCCcceEecCCCcHH
Q 019147 91 KFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-VPI-EETIGEMKKLVEEGKIKYIGLSEASPD 168 (345)
Q Consensus 91 K~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~-~~~-~~~~~~l~~l~~~G~ir~iGvS~~~~~ 168 (345)
|.. +.+++.+++++++||+||||||||+|++|+|+.. .+. +++|++|++|+++||||+||||||+++
T Consensus 79 k~~-----------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~ 147 (292)
T PRK14863 79 VRA-----------DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASD 147 (292)
T ss_pred ccc-----------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHH
Confidence 842 2358999999999999999999999999999763 333 678999999999999999999999999
Q ss_pred HHHHHhhcCCCceeccccCccccccc-ccchhHHHHhCCeEEeecCCCCcccCCCCccCCCCCccccccCCCCCCcchhh
Q 019147 169 TIRRAHAVHPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLKFFPRFNGENLDR 247 (345)
Q Consensus 169 ~l~~~~~~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (345)
++..+....+++++|++||++++..+ .+++++|+++||++++|+||++|+|++... ..+. .+..
T Consensus 148 ~~~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~--~~~~-------------~~~~ 212 (292)
T PRK14863 148 DPVGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPD--RVPA-------------QLKG 212 (292)
T ss_pred HHHHHHhcCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCcc--cCcc-------------chhh
Confidence 99888777889999999999998754 479999999999999999999999975311 0000 0112
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCCeEecCCCCCHHhHHHhhcccCCCCCHHHHHHHHHh
Q 019147 248 NKSIYFRIENLAKKYKCTSAQLALAWVLAQGEDVVPIPGTTKIKNLDDNIGSLTVKLTKEDLKEISDA 315 (345)
Q Consensus 248 ~~~~~~~l~~la~~~g~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~enl~a~~~~Lt~e~~~~i~~~ 315 (345)
....+..+.+++.++++|++|+||+|++++|.|+++|+|+++++|+++|+++...+++++.+++|..-
T Consensus 213 ~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~~~ 280 (292)
T PRK14863 213 ASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMAID 280 (292)
T ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhccCC
Confidence 23455678888889999999999999999999999999999999999999999999999888777543
No 14
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=1.2e-54 Score=372.44 Aligned_cols=284 Identities=29% Similarity=0.449 Sum_probs=254.2
Q ss_pred cCeeecCCCCcccCccccccccCcCCCCCCCCHHHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhc--CCCCCe
Q 019147 9 VPRVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE--LPRENI 86 (345)
Q Consensus 9 m~~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~--~~R~~~ 86 (345)
|++.+||+.|+++|+|.+|+|++.. |+ ++..++...++.|++.|||+||-|+.||.|..|+++|.+|+- ..|+++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d-~~--~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p~lReki 77 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND-WN--MSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAPGLREKI 77 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh-cc--CCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcChhhhhhe
Confidence 7889999999999999999999974 44 366899999999999999999999999999999999999986 579999
Q ss_pred EEEeeccccccCc---cccccCCCHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecC
Q 019147 87 QVATKFGFVELGF---TSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS 163 (345)
Q Consensus 87 ~I~tK~~~~~~~~---~~~~~~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS 163 (345)
.|+||+|...... ...+.++|.++|..|+|+||++|+|||+|+++||+||+..+.+++.+++..|+++||||++|||
T Consensus 78 eivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGVS 157 (298)
T COG4989 78 EIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGVS 157 (298)
T ss_pred EeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeecC
Confidence 9999999765432 2235789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHhhc--CCCceeccccCcccccc-cccchhHHHHhCCeEEeecCCCCccc-CCCCccCCCCCccccccCCC
Q 019147 164 EASPDTIRRAHAV--HPITAVQLEWSLWARDI-ENEIVPLCRELGIGIVPYCPLGRGFF-GGKAVVESVPLDSFLKFFPR 239 (345)
Q Consensus 164 ~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a~spl~~G~L-~g~~~~~~~~~~~~~~~~~~ 239 (345)
||++.+++.+.+. .++.+||+++|+++... .++.+++|+.+.|.+++||||++|-+ +|.
T Consensus 158 Nf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g~----------------- 220 (298)
T COG4989 158 NFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLGD----------------- 220 (298)
T ss_pred CCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccCC-----------------
Confidence 9999999887776 45789999999998753 47899999999999999999998832 221
Q ss_pred CCCcchhhhHHHHHHHHHHHHHcC-CCHHHHHHHHHHhcCCCeEecCCCCCHHhHHHhhcccCCCCCHHHHHHHHHhCCC
Q 019147 240 FNGENLDRNKSIYFRIENLAKKYK-CTSAQLALAWVLAQGEDVVPIPGTTKIKNLDDNIGSLTVKLTKEDLKEISDAVPT 318 (345)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~la~~~g-~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~enl~a~~~~Lt~e~~~~i~~~~~~ 318 (345)
+..++....+..+|.++| .|..++|++|++.+|.-..||+|+.+++++++.++|+++.||.++|-+|..+..+
T Consensus 221 ------~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa~G 294 (298)
T COG4989 221 ------DKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAAIG 294 (298)
T ss_pred ------cchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHHhcc
Confidence 223455668999999999 7999999999999999999999999999999999999999999999999988743
No 15
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=8.8e-54 Score=391.68 Aligned_cols=254 Identities=30% Similarity=0.404 Sum_probs=224.0
Q ss_pred eeecCCCCcccCccccccccCcCCCCCCCCHHHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhc--CCCCCeEE
Q 019147 11 RVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE--LPRENIQV 88 (345)
Q Consensus 11 ~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~--~~R~~~~I 88 (345)
+..| ++|+.||.||||||++ +.+++.++|+.|++.|||+||||+.|| +|+.+|++|+. ..|++++|
T Consensus 6 ~~~l-~~g~~v~~lglG~~~~--------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~~~i 73 (275)
T PRK11565 6 VIKL-QDGNVMPQLGLGVWQA--------SNEEVITAIHKALEVGYRSIDTAAIYK---NEEGVGKALKEASVAREELFI 73 (275)
T ss_pred eEEc-CCCCccCCcceECccC--------CHHHHHHHHHHHHHhCCCEEEchhhhC---CHHHHHHHHHHcCCCHHHEEE
Confidence 3557 8999999999999975 457899999999999999999999998 79999999986 36899999
Q ss_pred EeeccccccCccccccCCCHHHHHHHHHHHHhhcCCCceeEEEeecCCCC-CCHHHHHHHHHHHHHcCCcceEecCCCcH
Q 019147 89 ATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSEASP 167 (345)
Q Consensus 89 ~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~-~~~~~~~~~l~~l~~~G~ir~iGvS~~~~ 167 (345)
+||++. .+++.+++++++||++||+||||+|++|||+.. .+..++|++|++|+++|+||+||||||++
T Consensus 74 ~tK~~~-----------~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ir~iGvSn~~~ 142 (275)
T PRK11565 74 TTKLWN-----------DDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQI 142 (275)
T ss_pred EEEecC-----------cchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCeeEEeeccCCH
Confidence 999862 136799999999999999999999999999865 34789999999999999999999999999
Q ss_pred HHHHHHhhcC--CCceeccccCcccccccccchhHHHHhCCeEEeecCCCCcccCCCCccCCCCCccccccCCCCCCcch
Q 019147 168 DTIRRAHAVH--PITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLKFFPRFNGENL 245 (345)
Q Consensus 168 ~~l~~~~~~~--~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~ 245 (345)
+++++++... .+.++|++||++.+. .+++++|+++||++++|+||++|.- + .+.
T Consensus 143 ~~l~~~~~~~~v~~~~~Q~~~~~~~~~--~~~~~~~~~~~i~~~a~spl~~G~~-~-----------------~~~---- 198 (275)
T PRK11565 143 HHLQRLIDETGVTPVINQIELHPLMQQ--RQLHAWNATHKIQTESWSPLAQGGK-G-----------------VFD---- 198 (275)
T ss_pred HHHHHHHHhCCCCceeeeeecCCccch--HHHHHHHHHCCCEEEEEccCCCCCc-c-----------------ccc----
Confidence 9999887543 478999999999874 5799999999999999999997630 0 000
Q ss_pred hhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCCeEecCCCCCHHhHHHhhcccCCCCCHHHHHHHHHhCCCC
Q 019147 246 DRNKSIYFRIENLAKKYKCTSAQLALAWVLAQGEDVVPIPGTTKIKNLDDNIGSLTVKLTKEDLKEISDAVPTE 319 (345)
Q Consensus 246 ~~~~~~~~~l~~la~~~g~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~enl~a~~~~Lt~e~~~~i~~~~~~~ 319 (345)
.+.+.++|+++|+|++|+||||+++++. +||+|+++++|+++|+++++++|+++++++|+++....
T Consensus 199 ------~~~l~~ia~~~g~s~aq~aL~w~l~~~~--~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~~~~~ 264 (275)
T PRK11565 199 ------QKVIRDLADKYGKTPAQIVIRWHLDSGL--VVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKLDQGK 264 (275)
T ss_pred ------CHHHHHHHHHhCCCHHHHHHHHHHcCCC--EeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhhcccC
Confidence 1378999999999999999999999986 68999999999999999999999999999999998643
No 16
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=4e-51 Score=353.22 Aligned_cols=282 Identities=26% Similarity=0.410 Sum_probs=243.6
Q ss_pred CcCeeecCCCCcccCccccccccCcCCCCCCCCHHHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeE
Q 019147 8 QVPRVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQ 87 (345)
Q Consensus 8 ~m~~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~ 87 (345)
+|.||.+|+||++||+||||+..++..|+.. +.++....+..|+.+|||+|||++.||.++||..+|.++++.+|+.++
T Consensus 21 rmeyR~lg~tgl~VSk~~fGga~L~~~fgd~-~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR~aYy 99 (342)
T KOG1576|consen 21 RMEYRQLGSTGLRVSKLGFGGAALGQLFGDE-DEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPREAYY 99 (342)
T ss_pred HHHHhhcCCCcceeeeeeecchhhhhhcCCc-chhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCChhhee
Confidence 4999999999999999999999999988873 777777777779999999999999999999999999999999999999
Q ss_pred EEeeccccccCccccccCCCHHHHHHHHHHHHhhcCCCceeEEEeecCCCC----CCHHHHHHHHHHHHHcCCcceEecC
Q 019147 88 VATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS----VPIEETIGEMKKLVEEGKIKYIGLS 163 (345)
Q Consensus 88 I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~----~~~~~~~~~l~~l~~~G~ir~iGvS 163 (345)
|+||++....+ .....+++++.+++++++||+||++||+|++++|..+.. ..+.|++.+|++||++||||+||++
T Consensus 100 IaTKvgRy~ld-~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiGit 178 (342)
T KOG1576|consen 100 IATKVGRYELD-YANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFIGIT 178 (342)
T ss_pred eeeeeeecccC-ccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEeeec
Confidence 99999976533 233578999999999999999999999999999998764 2357999999999999999999999
Q ss_pred CCcHHHHHHHhhcC--CCceec--cccCcccccccccchhHHHHhCCeEEeecCCCCcccCCCCccCCCCCccccccCCC
Q 019147 164 EASPDTIRRAHAVH--PITAVQ--LEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLKFFPR 239 (345)
Q Consensus 164 ~~~~~~l~~~~~~~--~~~~~q--~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~ 239 (345)
.++.+.+.+.++.. .++++- ..|++.+..- -..+++.+.+|++|+.-++++.|+|+...++.
T Consensus 179 gypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tL-l~~~~~~~sk~vgVi~AsalsmgLLt~~gp~~------------- 244 (342)
T KOG1576|consen 179 GYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTL-LRYLKRLKSKGVGVINASALSMGLLTNQGPPP------------- 244 (342)
T ss_pred ccchHHHHHHHhcCCCceeeehhhhhhccccHHH-HHHHHHHHhcCceEEehhhHHHHHhhcCCCCC-------------
Confidence 99999999988764 366665 5666655432 36677888999999999999999999653221
Q ss_pred CCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCCeEecCCCCCHHhHHHhhcccCCCCCH
Q 019147 240 FNGENLDRNKSIYFRIENLAKKYKCTSAQLALAWVLAQGEDVVPIPGTTKIKNLDDNIGSLTVKLTK 306 (345)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~la~~~g~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~enl~a~~~~Lt~ 306 (345)
| .+..++..+...+-.++|++.|+....+|++|.++.++++++++|+++.++|+.|+++..-.||.
T Consensus 245 w-HPaS~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~ 310 (342)
T KOG1576|consen 245 W-HPASDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSS 310 (342)
T ss_pred C-CCCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccc
Confidence 1 12235667777788899999999999999999999999999999999999999999987667777
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=2.2e-50 Score=364.59 Aligned_cols=272 Identities=28% Similarity=0.381 Sum_probs=242.3
Q ss_pred cCeeecCCCCcccCccccccccCcCCCCCCCCHHHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEE
Q 019147 9 VPRVKLGTQGLEVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQV 88 (345)
Q Consensus 9 m~~~~lg~tg~~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I 88 (345)
|.||++|+||.++|.||||||++...|....+.+.+.++|++|+++|||+||||..|..|.||..+|+||++..|+++.+
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~L 80 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKL 80 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEE
Confidence 78999999999999999999999876766679999999999999999999999999988889999999999988999999
Q ss_pred EeeccccccCccccccCCCHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHH-----HHHHHHHHHHHcCCcceEecC
Q 019147 89 ATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIE-----ETIGEMKKLVEEGKIKYIGLS 163 (345)
Q Consensus 89 ~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~-----~~~~~l~~l~~~G~ir~iGvS 163 (345)
+||+.... --+++.+++-++++|++||+||+|+|+||.... ..++ ..++.+++++++|+||++|+|
T Consensus 81 aTKlp~~~--------~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~-e~~~k~~~~g~~df~~kak~eGkIr~~GFS 151 (391)
T COG1453 81 ATKLPSWP--------VKDREDMERIFNEQLEKLGTDYIDYYLIHGLNT-ETWEKIERLGVFDFLEKAKAEGKIRNAGFS 151 (391)
T ss_pred EeecCCcc--------ccCHHHHHHHHHHHHHHhCCchhhhhhhccccH-HHHHHHHccChHHHHHHHHhcCcEEEeeec
Confidence 99998533 236899999999999999999999999999987 4443 369999999999999999999
Q ss_pred CCc-HHHHHHHhhcCCCceeccccCccccccc--ccchhHHHHhCCeEEeecCCCCcccCCCCccCCCCCccccccCCCC
Q 019147 164 EAS-PDTIRRAHAVHPITAVQLEWSLWARDIE--NEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLKFFPRF 240 (345)
Q Consensus 164 ~~~-~~~l~~~~~~~~~~~~q~~~n~~~~~~~--~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~ 240 (345)
.|+ ++.+.+++...+++++|++||.+++... .+.+++|.++|++|+.++|+.+|-|..+ .|
T Consensus 152 fHgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~-----vP----------- 215 (391)
T COG1453 152 FHGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYN-----VP----------- 215 (391)
T ss_pred CCCCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccC-----CC-----------
Confidence 985 5788999999999999999999998754 4899999999999999999999876542 11
Q ss_pred CCcchhhhHHHHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCeEecCCCCCHHhHHHhhcccCC---CCCHHHHHHHHHh
Q 019147 241 NGENLDRNKSIYFRIENLAKKYK--CTSAQLALAWVLAQGEDVVPIPGTTKIKNLDDNIGSLTV---KLTKEDLKEISDA 315 (345)
Q Consensus 241 ~~~~~~~~~~~~~~l~~la~~~g--~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~enl~a~~~---~Lt~e~~~~i~~~ 315 (345)
+++.+++++++ .||+.+|+||++++|.|++|++|+++++|++||++..+. +||++|++.|.++
T Consensus 216 ------------~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v 283 (391)
T COG1453 216 ------------EKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKV 283 (391)
T ss_pred ------------HHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHH
Confidence 27888888876 689999999999999999999999999999999998863 3999999888876
Q ss_pred CC
Q 019147 316 VP 317 (345)
Q Consensus 316 ~~ 317 (345)
.+
T Consensus 284 ~~ 285 (391)
T COG1453 284 EE 285 (391)
T ss_pred HH
Confidence 53
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=98.00 E-value=1.1e-05 Score=70.20 Aligned_cols=71 Identities=15% Similarity=0.198 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhhc--CCCceeccccCcccccccccchhHHHHhCCeEEeec
Q 019147 141 IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV--HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYC 212 (345)
Q Consensus 141 ~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~s 212 (345)
+.++|+.||+++.+|+|..||||.|++.+|++++.. ..|..+|+...-...-+ .++..||..++|.++.++
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvP-pdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVP-PDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCC-HHHHHHhhhcceeeeecC
Confidence 456899999999999999999999999999999887 45788898877776654 589999999999998754
No 19
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=92.30 E-value=5.5 Score=37.10 Aligned_cols=155 Identities=15% Similarity=0.102 Sum_probs=95.2
Q ss_pred CHHHHHHHHHHHHHCCCCeeecCCCCCCC-cHHHHHHHHHhcCCCCCeEEEeeccccccCccccccCCCHHHHHHHHHHH
Q 019147 40 SEEDGISIIKHAFSKGITFFDTADKYGPY-TNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEAS 118 (345)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G-~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~S 118 (345)
+.++..+.++.+.+.|++.|+.-- |.. ..+.-.=+++++... ++-|.-+.... ++.+.. ..+-+.
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~~~~d~~~v~~lr~~~g-~~~l~vD~n~~----------~~~~~A-~~~~~~ 199 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGDLEDDIERIRAIREAAP-DARLRVDANQG----------WTPEEA-VELLRE 199 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCChhhHHHHHHHHHHhCC-CCeEEEeCCCC----------cCHHHH-HHHHHH
Confidence 557777888889999999998642 211 112122234443122 55666665322 334332 233445
Q ss_pred HhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhhcCCCceeccccCcccc-ccccc
Q 019147 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR-DIENE 196 (345)
Q Consensus 119 L~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~ 196 (345)
|+.+++ .++-.|-.. +-++.+.+|++...|. +.|=+-++.+.+..+++....+++|+..+.+-. ..-.+
T Consensus 200 l~~~~l-----~~iEeP~~~----~d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~ 270 (316)
T cd03319 200 LAELGV-----ELIEQPVPA----GDDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALR 270 (316)
T ss_pred HHhcCC-----CEEECCCCC----CCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHH
Confidence 555544 344444332 2366777888887776 345566888999999998889999987665321 11257
Q ss_pred chhHHHHhCCeEEeecCCCCc
Q 019147 197 IVPLCRELGIGIVPYCPLGRG 217 (345)
Q Consensus 197 ~~~~~~~~gi~v~a~spl~~G 217 (345)
+..+|+++|+.++..+-+..+
T Consensus 271 ~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 271 IADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHHHHHcCCCEEEECchhhH
Confidence 899999999999987555443
No 20
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=83.55 E-value=40 Score=31.79 Aligned_cols=153 Identities=13% Similarity=0.112 Sum_probs=89.8
Q ss_pred CHHHHHHHHHHHHHCCCCeeecC--CCCCCC---cHHHHHHHHHhcCCCCCeEEEeeccccccCccccccCCCHHHHHHH
Q 019147 40 SEEDGISIIKHAFSKGITFFDTA--DKYGPY---TNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSC 114 (345)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA--~~Yg~G---~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ 114 (345)
+.++..+.++.+.+.|++.|-.- ..|..+ +-+.-.=+++++.-.+++.|...... .++.+...+
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~vDaN~----------~~~~~~a~~- 207 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDANG----------RWDLAEAIR- 207 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEEECCC----------CCCHHHHHH-
Confidence 35667777888889999988643 222100 01111123344322345555555421 134444332
Q ss_pred HHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhhcCCCceeccccCccccc-
Q 019147 115 CEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARD- 192 (345)
Q Consensus 115 ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~- 192 (345)
-+++|. ..++.+++.|-.. +-++.+.+|++.-.|. ..|=|.++.+.+..+++....+++|+....+-.-
T Consensus 208 ---~~~~l~--~~~i~~iEqP~~~----~~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~ 278 (357)
T cd03316 208 ---LARALE--EYDLFWFEEPVPP----DDLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGIT 278 (357)
T ss_pred ---HHHHhC--ccCCCeEcCCCCc----cCHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHH
Confidence 233332 1245556666432 2466677788775555 3444567889999999888889999876654211
Q ss_pred ccccchhHHHHhCCeEEeec
Q 019147 193 IENEIVPLCRELGIGIVPYC 212 (345)
Q Consensus 193 ~~~~~~~~~~~~gi~v~a~s 212 (345)
.-.++...|+++|+.++..+
T Consensus 279 ~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 279 EAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred HHHHHHHHHHHcCCeEeccC
Confidence 12588999999999988654
No 21
>PRK08609 hypothetical protein; Provisional
Probab=83.43 E-value=56 Score=33.31 Aligned_cols=149 Identities=15% Similarity=0.209 Sum_probs=83.0
Q ss_pred HHHHHHHHHHCCCCeeecCCCCC-----CCcHHHHHHHHHhc-------CCCCCeEEEeeccccccCccccccCCCHHHH
Q 019147 44 GISIIKHAFSKGITFFDTADKYG-----PYTNEILLGKALKE-------LPRENIQVATKFGFVELGFTSVIVKGTPEYV 111 (345)
Q Consensus 44 ~~~~l~~A~~~Gin~~DTA~~Yg-----~G~sE~~lG~al~~-------~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i 111 (345)
..++++.|.+.|+.+|=.++|+. .|.+...+-..++. ...=++++..-+.... +.+
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i~~--------~g~---- 418 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMDILP--------DGS---- 418 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeecC--------Ccc----
Confidence 55699999999999998888862 23333333333222 1111223322222211 111
Q ss_pred HHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCC------Cc--H---HHHHHHhhcCCCc
Q 019147 112 RSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE------AS--P---DTIRRAHAVHPIT 180 (345)
Q Consensus 112 ~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~------~~--~---~~l~~~~~~~~~~ 180 (345)
..-.+..|+. .||+ +.-+|++.. .+.+++++.+.++.+.|.+--||=-. .. . +.+.+++.... .
T Consensus 419 ~d~~~~~L~~--~D~v-I~SvH~~~~-~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G-~ 493 (570)
T PRK08609 419 LDYDDEVLAE--LDYV-IAAIHSSFS-QSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETN-T 493 (570)
T ss_pred hhhcHHHHHh--hCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhC-C
Confidence 2222334544 4666 778897643 34677888899999999888776554 11 1 22223322233 2
Q ss_pred eeccccCcccccccccchhHHHHhCCeEE
Q 019147 181 AVQLEWSLWARDIENEIVPLCRELGIGIV 209 (345)
Q Consensus 181 ~~q~~~n~~~~~~~~~~~~~~~~~gi~v~ 209 (345)
++|+.-+.+.......++..|.+.|+.+.
T Consensus 494 ~lEINa~~~r~~~~~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 494 ALELNANPNRLDLSAEHLKKAQEAGVKLA 522 (570)
T ss_pred EEEEcCCccccCccHHHHHHHHHcCCEEE
Confidence 45665555433334678889999998754
No 22
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=83.32 E-value=39 Score=31.50 Aligned_cols=133 Identities=12% Similarity=-0.007 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHHCCCCeeec---CC-----CCCCC----cHHHHHHHHHhcC---CCCCeEEEeeccccccCcccccc
Q 019147 40 SEEDGISIIKHAFSKGITFFDT---AD-----KYGPY----TNEILLGKALKEL---PRENIQVATKFGFVELGFTSVIV 104 (345)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DT---A~-----~Yg~G----~sE~~lG~al~~~---~R~~~~I~tK~~~~~~~~~~~~~ 104 (345)
++++..+....+.+.|+..||- .+ .||.| ..-+.+.+.++.. -..++-|+.|+.....
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~------- 145 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWD------- 145 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCC-------
Confidence 6677777778888899999993 22 36655 2334555555541 1224778889764221
Q ss_pred CCCHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHH---HHHHHHHHHHcCCcceEecCC-CcHHHHHHHhhcCCCc
Q 019147 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEE---TIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPIT 180 (345)
Q Consensus 105 ~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~---~~~~l~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~ 180 (345)
+.+. ...+-+.|+..| +|.+-+|.-........ -|+...++++.-.|.-||... .++++..++++....+
T Consensus 146 --~~~~-~~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~D 219 (312)
T PRK10550 146 --SGER-KFEIADAVQQAG---ATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCD 219 (312)
T ss_pred --CchH-HHHHHHHHHhcC---CCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCC
Confidence 1122 235556677777 56667786433221111 267788888877788888776 5788888888777788
Q ss_pred eeccc
Q 019147 181 AVQLE 185 (345)
Q Consensus 181 ~~q~~ 185 (345)
.+++-
T Consensus 220 gVmiG 224 (312)
T PRK10550 220 AVMIG 224 (312)
T ss_pred EEEEc
Confidence 87764
No 23
>PRK08392 hypothetical protein; Provisional
Probab=82.57 E-value=32 Score=30.03 Aligned_cols=149 Identities=16% Similarity=0.149 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhc----CCCCCeEEEeeccccccCccccccCCCHHHHHHHHHHH
Q 019147 43 DGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEAS 118 (345)
Q Consensus 43 ~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~----~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~S 118 (345)
...++++.|.+.|++.|=.+++.... ...-+-..+++ ..+..+ .-+.|.... ..++. ....++.
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~-~~~~~~~y~~~i~~l~~~~~i--~il~GiE~~--------~~~~~-~~~~~~~ 82 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYF-TPSKFNAYINEIRQWGEESEI--VVLAGIEAN--------ITPNG-VDITDDF 82 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCcc-chhhHHHHHHHHHHHhhccCc--eEEEeEEee--------ecCCc-chhHHHH
Confidence 36788999999999998766665311 11112222222 112222 223332211 00111 1223344
Q ss_pred HhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCCC-------c-HHHHHHHhhc---CCCceeccccC
Q 019147 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-------S-PDTIRRAHAV---HPITAVQLEWS 187 (345)
Q Consensus 119 L~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~-------~-~~~l~~~~~~---~~~~~~q~~~n 187 (345)
+++ .||+ +.-+|.+......++-.+.+.++.+.|.+.-+|=-.. . .+.+.++++. .. ..+++|
T Consensus 83 ~~~--~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g---~~lEiN 156 (215)
T PRK08392 83 AKK--LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYG---KAFEIS 156 (215)
T ss_pred Hhh--CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhC---CEEEEe
Confidence 443 4665 6677844332334566788888889998777765321 1 1233332222 22 122333
Q ss_pred cccccccccchhHHHHhCCeEE
Q 019147 188 LWARDIENEIVPLCRELGIGIV 209 (345)
Q Consensus 188 ~~~~~~~~~~~~~~~~~gi~v~ 209 (345)
-..+.+...+++.|++.|+.++
T Consensus 157 t~~~~p~~~~l~~~~~~G~~~~ 178 (215)
T PRK08392 157 SRYRVPDLEFIRECIKRGIKLT 178 (215)
T ss_pred CCCCCCCHHHHHHHHHcCCEEE
Confidence 2222233578999999998764
No 24
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=82.35 E-value=38 Score=31.08 Aligned_cols=152 Identities=13% Similarity=0.078 Sum_probs=90.7
Q ss_pred CHHHHHHHHHHHHHCCCCeeec---CCCCCC-----CcHHHHHHHHHhcCCCC-CeEEEeeccccccCccccccCCCHHH
Q 019147 40 SEEDGISIIKHAFSKGITFFDT---ADKYGP-----YTNEILLGKALKELPRE-NIQVATKFGFVELGFTSVIVKGTPEY 110 (345)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DT---A~~Yg~-----G~sE~~lG~al~~~~R~-~~~I~tK~~~~~~~~~~~~~~~s~~~ 110 (345)
+.++..+..+.+.+.|+..||. ++.+.. |.+.+.+-+.++...+. ++-|..|+.+.. +.
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~------------~~ 167 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPNV------------TD 167 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCCc------------hh
Confidence 5677888888888999999986 222211 12566776777663222 678888986421 12
Q ss_pred HHHHHHHHHhhcCCCceeEEE------eecCCCC-------------CCHHHHHHHHHHHHHcCCcceEecCC-CcHHHH
Q 019147 111 VRSCCEASLRRLDVEYIDLYY------QHRVDTS-------------VPIEETIGEMKKLVEEGKIKYIGLSE-ASPDTI 170 (345)
Q Consensus 111 i~~~ve~SL~~Lg~d~iDl~~------lH~~~~~-------------~~~~~~~~~l~~l~~~G~ir~iGvS~-~~~~~l 170 (345)
+ ..+-+.++..|.|.|++.- +|.-... ....-.++.+.++++.=.|.-||+.. ++++.+
T Consensus 168 ~-~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da 246 (296)
T cd04740 168 I-VEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDA 246 (296)
T ss_pred H-HHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHH
Confidence 2 2334557788988776641 1110000 00112467777777765688888887 477888
Q ss_pred HHHhhcCCCceeccccCcccccc------cccchhHHHHhCC
Q 019147 171 RRAHAVHPITAVQLEWSLWARDI------ENEIVPLCRELGI 206 (345)
Q Consensus 171 ~~~~~~~~~~~~q~~~n~~~~~~------~~~~~~~~~~~gi 206 (345)
.+++... .+.+|+---++. ++ ..++.++.+++|.
T Consensus 247 ~~~l~~G-Ad~V~igra~l~-~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 247 LEFLMAG-ASAVQVGTANFV-DPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHHHHcC-CCEEEEchhhhc-ChHHHHHHHHHHHHHHHHcCC
Confidence 8888754 688887444333 22 1456666666664
No 25
>PRK07945 hypothetical protein; Provisional
Probab=82.02 E-value=20 Score=33.85 Aligned_cols=155 Identities=15% Similarity=0.093 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHCCCCeeecCCCCCC-----CcHHHHHHHHHhcC--CCCCeE-EEeeccccccCccccccCCCHHHHHH
Q 019147 42 EDGISIIKHAFSKGITFFDTADKYGP-----YTNEILLGKALKEL--PRENIQ-VATKFGFVELGFTSVIVKGTPEYVRS 113 (345)
Q Consensus 42 ~~~~~~l~~A~~~Gin~~DTA~~Yg~-----G~sE~~lG~al~~~--~R~~~~-I~tK~~~~~~~~~~~~~~~s~~~i~~ 113 (345)
....++++.|.+.|+..+=.++|... +.+...+-+.+..+ .|+++- |.-+.|....- .++.+.+..
T Consensus 111 ~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~I~Il~GiE~d~----~~~g~~~~~-- 184 (335)
T PRK07945 111 SPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAPFRILTGIEVDI----LDDGSLDQE-- 184 (335)
T ss_pred CCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCCceEEEEeEecc----cCCCCcchh--
Confidence 44789999999999998877666421 22222233333221 111110 33333322110 011222322
Q ss_pred HHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCC---------------CcHHHHHHHhhcCC
Q 019147 114 CCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE---------------ASPDTIRRAHAVHP 178 (345)
Q Consensus 114 ~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~---------------~~~~~l~~~~~~~~ 178 (345)
++.|+. .||+ +.-+|+... .+.++..+.+.++.+.+.+..+|=-. +..+.+.+++....
T Consensus 185 --~~~l~~--~D~v-IgSvH~~~~-~~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e~g 258 (335)
T PRK07945 185 --PELLDR--LDVV-VASVHSKLR-MDAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACREHG 258 (335)
T ss_pred --HHHHHh--CCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHHhC
Confidence 333333 4666 677898643 23455677888888888888887432 11122222222222
Q ss_pred CceeccccCcccccccccchhHHHHhCCeEE
Q 019147 179 ITAVQLEWSLWARDIENEIVPLCRELGIGIV 209 (345)
Q Consensus 179 ~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~ 209 (345)
. .+.+..+.+...+...+++.|++.|+.++
T Consensus 259 ~-~lEINt~~~r~~P~~~il~~a~e~G~~vt 288 (335)
T PRK07945 259 T-AVEINSRPERRDPPTRLLRLALDAGCLFS 288 (335)
T ss_pred C-EEEEeCCCCCCCChHHHHHHHHHcCCeEE
Confidence 1 22222233333334578888888888754
No 26
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=81.87 E-value=31 Score=31.25 Aligned_cols=134 Identities=11% Similarity=0.146 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhhc--CCCceecc
Q 019147 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV--HPITAVQL 184 (345)
Q Consensus 107 s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~--~~~~~~q~ 184 (345)
+.+.+.+..++. ..-|-|.||+=.= +......+.+...++.+++.-.+ -|-+-+++++.++++++. ...-++-
T Consensus 23 d~~~i~~~A~~~-~~~GAdiIDVg~~--~~~~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~~iINs- 97 (261)
T PRK07535 23 DAAFIQKLALKQ-AEAGADYLDVNAG--TAVEEEPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGPPLINS- 97 (261)
T ss_pred CHHHHHHHHHHH-HHCCCCEEEECCC--CCchhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCCCEEEe-
Confidence 455555554444 3668999998532 11122234455566666554233 378889999999999987 3332222
Q ss_pred ccCcccccccccchhHHHHhCCeEEeecCCCCcccCCCCccCCCCCccccccCCCCCCcchhhhHHHHHHHHHHHHHcCC
Q 019147 185 EWSLWARDIENEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLKFFPRFNGENLDRNKSIYFRIENLAKKYKC 264 (345)
Q Consensus 185 ~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~ 264 (345)
.|..... ...+++.++++|+.++...--..|. +...+...+.++.+.+.|.++|+
T Consensus 98 -Is~~~~~-~~~~~~l~~~~g~~vv~m~~~~~g~-----------------------P~t~~~~~~~l~~~v~~a~~~GI 152 (261)
T PRK07535 98 -VSAEGEK-LEVVLPLVKKYNAPVVALTMDDTGI-----------------------PKDAEDRLAVAKELVEKADEYGI 152 (261)
T ss_pred -CCCCCcc-CHHHHHHHHHhCCCEEEEecCCCCC-----------------------CCCHHHHHHHHHHHHHHHHHcCC
Confidence 2222211 2478999999999999754322231 11123345566677777888888
Q ss_pred CHHHHH
Q 019147 265 TSAQLA 270 (345)
Q Consensus 265 s~~q~a 270 (345)
++.++.
T Consensus 153 ~~~~Ii 158 (261)
T PRK07535 153 PPEDIY 158 (261)
T ss_pred CHhHEE
Confidence 777654
No 27
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=80.42 E-value=24 Score=31.94 Aligned_cols=143 Identities=16% Similarity=0.126 Sum_probs=80.0
Q ss_pred CCHHHHHHHHHHHHhhcCCCceeEEE-eecCCCC-CCH----HHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhhcCCC
Q 019147 106 GTPEYVRSCCEASLRRLDVEYIDLYY-QHRVDTS-VPI----EETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPI 179 (345)
Q Consensus 106 ~s~~~i~~~ve~SL~~Lg~d~iDl~~-lH~~~~~-~~~----~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 179 (345)
++.+.+.+..++.+ +-|-|.||+=- =.+|+.. .+. +.+...++.+++.-.+. |.+-+++++.++++++...
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~- 97 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGA- 97 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCC-
Confidence 45555555555443 55889999842 2344432 122 23444566666653443 7888999999999998753
Q ss_pred ceeccccCcccccccccchhHHHHhCCeEEeecCCCCcccCCCCccCCCCCccccccCCCCCCcchhhhHHHHHHHHHHH
Q 019147 180 TAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLKFFPRFNGENLDRNKSIYFRIENLA 259 (345)
Q Consensus 180 ~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la 259 (345)
+. -...+....+ .++++.++++|..++.+.. .|. +.... ..+.| ..-.+.....+++..+.|
T Consensus 98 ~i-INdisg~~~~--~~~~~l~~~~~~~vV~m~~--~g~------p~~~~------~~~~~-~~~~~~~~~~~~~~i~~~ 159 (257)
T cd00739 98 DI-INDVSGGSDD--PAMLEVAAEYGAPLVLMHM--RGT------PKTMQ------ENPYY-EDVVDEVLSFLEARLEAA 159 (257)
T ss_pred CE-EEeCCCCCCC--hHHHHHHHHcCCCEEEECC--CCC------Ccccc------cCCCc-ccHHHHHHHHHHHHHHHH
Confidence 22 1222333221 5789999999999998433 221 11000 01111 112344445566666777
Q ss_pred HHcCCCHHHH
Q 019147 260 KKYKCTSAQL 269 (345)
Q Consensus 260 ~~~g~s~~q~ 269 (345)
.++|++..++
T Consensus 160 ~~~Gi~~~~I 169 (257)
T cd00739 160 ESAGVARNRI 169 (257)
T ss_pred HHcCCCHHHE
Confidence 8888765443
No 28
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=80.11 E-value=52 Score=30.73 Aligned_cols=152 Identities=14% Similarity=0.125 Sum_probs=81.8
Q ss_pred CCHHHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhc---C-CCCCeEEEeeccccccCccccccCCCHHHHHHH
Q 019147 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE---L-PRENIQVATKFGFVELGFTSVIVKGTPEYVRSC 114 (345)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~---~-~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ 114 (345)
++.++..++++.+.+.|++.|.-.. |.-.-..-+-+.++. . .-..+.|+|-.. .+.+.
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~tG--GEPll~~~l~~li~~i~~~~~~~~i~itTNG~----------------ll~~~ 110 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLTG--GEPLLRKDLEDIIAALAALPGIRDLALTTNGY----------------LLARR 110 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--CCCcCccCHHHHHHHHHhcCCCceEEEEcCch----------------hHHHH
Confidence 5788999999999999998876431 211111112233322 1 123455555521 12222
Q ss_pred HHHHHhhcCCCceeEEEeecCCC--------CCCHHHHHHHHHHHHHcCC----cceEecCCCcHHHHHHHhh---cCCC
Q 019147 115 CEASLRRLDVEYIDLYYQHRVDT--------SVPIEETIGEMKKLVEEGK----IKYIGLSEASPDTIRRAHA---VHPI 179 (345)
Q Consensus 115 ve~SL~~Lg~d~iDl~~lH~~~~--------~~~~~~~~~~l~~l~~~G~----ir~iGvS~~~~~~l~~~~~---~~~~ 179 (345)
-..|...|++.|- +-+|..++ ...+++++++++.+++.|. |..+.+...+.+++.++++ ..++
T Consensus 111 -~~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv 188 (331)
T PRK00164 111 -AAALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGI 188 (331)
T ss_pred -HHHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCC
Confidence 2345555655543 34454432 1357889999999999986 3344444455555555433 3455
Q ss_pred ceeccccCcccccc---------cccchhHHHHhCCeEEe
Q 019147 180 TAVQLEWSLWARDI---------ENEIVPLCRELGIGIVP 210 (345)
Q Consensus 180 ~~~q~~~n~~~~~~---------~~~~~~~~~~~gi~v~a 210 (345)
.+.-++|.++.... ..++++..+++|+.+..
T Consensus 189 ~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 228 (331)
T PRK00164 189 QLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQP 228 (331)
T ss_pred eEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcccc
Confidence 55555555543210 14567777777665443
No 29
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=79.73 E-value=46 Score=29.95 Aligned_cols=158 Identities=15% Similarity=0.166 Sum_probs=93.0
Q ss_pred CHHHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeeccccccCccccccCCCHHHHHHHHHHHH
Q 019147 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (345)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL 119 (345)
+.++..+.++.+.+.|++.|-.--.-.. ..+.-.=+++++...+++.|.-.... .++.+...+-+ +.|
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~~-~~d~~~v~~vr~~~g~~~~l~vDan~----------~~~~~~a~~~~-~~l 152 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRDP-ARDVAVVAALREAVGDDAELRVDANR----------GWTPKQAIRAL-RAL 152 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCH-HHHHHHHHHHHHhcCCCCEEEEeCCC----------CcCHHHHHHHH-HHH
Confidence 4566677778888999998875321110 11112223444422334544433321 23444443322 344
Q ss_pred hhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhhcCCCceeccccCcccc-cccccc
Q 019147 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR-DIENEI 197 (345)
Q Consensus 120 ~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~ 197 (345)
+.++ +.++.-|-... -++.+.++++.-.+. +.|=+-++.+.+..+++...++++|+..+.+-. ..-.++
T Consensus 153 ~~~~-----i~~iEeP~~~~----d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~ 223 (265)
T cd03315 153 EDLG-----LDYVEQPLPAD----DLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRV 223 (265)
T ss_pred HhcC-----CCEEECCCCcc----cHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHH
Confidence 5544 44456564322 356677777776555 445566788899998888889999987665432 112578
Q ss_pred hhHHHHhCCeEEeecCCCCcc
Q 019147 198 VPLCRELGIGIVPYCPLGRGF 218 (345)
Q Consensus 198 ~~~~~~~gi~v~a~spl~~G~ 218 (345)
...|+++|+.++..+.+..|+
T Consensus 224 ~~~A~~~gi~~~~~~~~~s~i 244 (265)
T cd03315 224 LAVAEALGLPVMVGSMIESGL 244 (265)
T ss_pred HHHHHHcCCcEEecCccchHH
Confidence 999999999999876665443
No 30
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=79.12 E-value=12 Score=33.66 Aligned_cols=106 Identities=14% Similarity=0.112 Sum_probs=67.6
Q ss_pred CCCHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcC-CcceEecCCCcHHHHHHHhhcCCCceec
Q 019147 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEASPDTIRRAHAVHPITAVQ 183 (345)
Q Consensus 105 ~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvS~~~~~~l~~~~~~~~~~~~q 183 (345)
.++.+...+-+ +.|..+|+++|.+-..-.+...-..++.++.++++++.+ .++...++.-..+.++.+.+. .++.++
T Consensus 15 ~~s~e~~~~i~-~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~-g~~~i~ 92 (265)
T cd03174 15 TFSTEDKLEIA-EALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEA-GVDEVR 92 (265)
T ss_pred CCCHHHHHHHH-HHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhC-CcCEEE
Confidence 35566655544 458889999999876654422211245688888999988 577667776556667666654 356666
Q ss_pred cccCccc--------ccc------cccchhHHHHhCCeEEeec
Q 019147 184 LEWSLWA--------RDI------ENEIVPLCRELGIGIVPYC 212 (345)
Q Consensus 184 ~~~n~~~--------~~~------~~~~~~~~~~~gi~v~a~s 212 (345)
+.+..-+ +.. -...+++++++|+.+...-
T Consensus 93 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 93 IFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 6554431 111 1467888899998877544
No 31
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=78.86 E-value=31 Score=31.09 Aligned_cols=102 Identities=18% Similarity=0.139 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHhhcCCCceeEEE-eecCCCC-CC----HHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhhcCCC
Q 019147 106 GTPEYVRSCCEASLRRLDVEYIDLYY-QHRVDTS-VP----IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPI 179 (345)
Q Consensus 106 ~s~~~i~~~ve~SL~~Lg~d~iDl~~-lH~~~~~-~~----~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 179 (345)
.+.+.+.+..++.+ .-|-|.||+=- --+|+.. .+ .+.+...++.+++.-.+ -|.+-+++++.++++++....
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~-piSIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDV-PISVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCC-eEEEeCCcHHHHHHHHHhCCC
Confidence 45666666655554 66889999853 2344321 11 23356667777665333 388899999999999987632
Q ss_pred ceeccccCcccccccccchhHHHHhCCeEEeecC
Q 019147 180 TAVQLEWSLWARDIENEIVPLCRELGIGIVPYCP 213 (345)
Q Consensus 180 ~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~sp 213 (345)
-+ ...+....+ .++++.++++|..++.+..
T Consensus 99 iI--Ndis~~~~~--~~~~~l~~~~~~~vV~m~~ 128 (258)
T cd00423 99 II--NDVSGGRGD--PEMAPLAAEYGAPVVLMHM 128 (258)
T ss_pred EE--EeCCCCCCC--hHHHHHHHHcCCCEEEECc
Confidence 22 222322211 4789999999999988654
No 32
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=78.01 E-value=19 Score=30.98 Aligned_cols=150 Identities=17% Similarity=0.182 Sum_probs=93.3
Q ss_pred HHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeeccccccCccccccCCCHHHHHHHHHHHH------
Q 019147 46 SIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL------ 119 (345)
Q Consensus 46 ~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL------ 119 (345)
+++..-++-|-+.+|-.-..| .+-+.|++ .+ .+. . ...+.+++.+.+++++-+
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG------~LL~~L~~-~k-~v~----g---------~GvEid~~~v~~cv~rGv~Viq~D 63 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDG------ELLAYLKD-EK-QVD----G---------YGVEIDPDNVAACVARGVSVIQGD 63 (193)
T ss_pred HHHHHHcCCCCEEEecCCCch------HHHHHHHH-hc-CCe----E---------EEEecCHHHHHHHHHcCCCEEECC
Confidence 456667788889999776555 24466654 11 111 0 112345666666655544
Q ss_pred -----hhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhh--cCCCceeccccCccccc
Q 019147 120 -----RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHA--VHPITAVQLEWSLWARD 192 (345)
Q Consensus 120 -----~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~--~~~~~~~q~~~n~~~~~ 192 (345)
....-+.+|.+.+..-= ..+....+.|+++.+=|+---|++.||.-+....-+- -.-|..-.++|+-++..
T Consensus 64 ld~gL~~f~d~sFD~VIlsqtL--Q~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTP 141 (193)
T PF07021_consen 64 LDEGLADFPDQSFDYVILSQTL--QAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTP 141 (193)
T ss_pred HHHhHhhCCCCCccEEehHhHH--HhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCC
Confidence 44444455554443210 1123345568888888988889999998776554333 23356678888877653
Q ss_pred c-----cccchhHHHHhCCeEEeecCCCCcc
Q 019147 193 I-----ENEIVPLCRELGIGIVPYCPLGRGF 218 (345)
Q Consensus 193 ~-----~~~~~~~~~~~gi~v~a~spl~~G~ 218 (345)
. -.+..++|++.|+.|.-..++..+.
T Consensus 142 Nih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 142 NIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred CcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 1 1688899999999999988887653
No 33
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=77.52 E-value=7.3 Score=34.01 Aligned_cols=67 Identities=15% Similarity=0.198 Sum_probs=46.1
Q ss_pred HHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecC-CCcHHHHHHHhhcCCCceecccc
Q 019147 118 SLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPITAVQLEW 186 (345)
Q Consensus 118 SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~ 186 (345)
.+..+|.||+=+++........+.+.+ ..+.... .+.++.+||. |.+++.+.++++..+++++|+.-
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~V~~~~a-~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG 83 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRHQTITQI-KKLASAV-PNHIDKVCVVVNPDLTTIEHILSNTSINTIQLHG 83 (207)
T ss_pred HHHHcCCCEEEEecCCCCcccCCHHHH-HHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECC
Confidence 345699999998754433333444433 3333322 3568889996 78899999999989999999864
No 34
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=73.84 E-value=18 Score=34.78 Aligned_cols=81 Identities=17% Similarity=0.207 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeeccccccCccccccCCCHHHHHHHHHHHHhh
Q 019147 42 EDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRR 121 (345)
Q Consensus 42 ~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~ 121 (345)
-....+++.|++.|++++|||...- ....+.+. ..+..+.+..-+|..+ ..+--....++++--+
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~~~---~~~~~~~~---a~~Agit~v~~~G~dP--------Gi~nv~a~~a~~~~~~- 143 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYYEE---PPWKLDEE---AKKAGITAVLGCGFDP--------GITNVLAAYAAKELFD- 143 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEcccCCc---hhhhhhHH---HHHcCeEEEcccCcCc--------chHHHHHHHHHHHhhc-
Confidence 3456899999999999999998655 22222222 2345566666666443 1222233333333322
Q ss_pred cCCCceeEEEeecCCCC
Q 019147 122 LDVEYIDLYYQHRVDTS 138 (345)
Q Consensus 122 Lg~d~iDl~~lH~~~~~ 138 (345)
.+++||+|..+.|+..
T Consensus 144 -~i~si~iy~g~~g~~~ 159 (389)
T COG1748 144 -EIESIDIYVGGLGEHG 159 (389)
T ss_pred -cccEEEEEEecCCCCC
Confidence 5899999999998765
No 35
>PTZ00413 lipoate synthase; Provisional
Probab=71.30 E-value=92 Score=29.97 Aligned_cols=158 Identities=13% Similarity=0.192 Sum_probs=84.1
Q ss_pred CCHHHHHHHHHHHHHCCCCeeecCCCCC----CCcHHHHHHHHHhcCCC--CCeEEEeeccccccCccccccCCCHHHHH
Q 019147 39 LSEEDGISIIKHAFSKGITFFDTADKYG----PYTNEILLGKALKELPR--ENIQVATKFGFVELGFTSVIVKGTPEYVR 112 (345)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg----~G~sE~~lG~al~~~~R--~~~~I~tK~~~~~~~~~~~~~~~s~~~i~ 112 (345)
.|.++..++-+.+.+.|++|+=.+...+ +|.++. +.+.++.+.. .++.|..-++-.. .+.+.++
T Consensus 177 lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~-~a~~I~~Ir~~~p~~~IevligDf~---------g~~e~l~ 246 (398)
T PTZ00413 177 LDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASH-VARCVELIKESNPELLLEALVGDFH---------GDLKSVE 246 (398)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHH-HHHHHHHHHccCCCCeEEEcCCccc---------cCHHHHH
Confidence 5888888888888899998764443333 222433 3445554322 3455555544211 1233332
Q ss_pred HHHHHHHhhcCCCceeEEEeecCCC-----------CCCHHHHHHHHHHHHHc--CCcc-----eEecCCCcHHHHHHHh
Q 019147 113 SCCEASLRRLDVEYIDLYYQHRVDT-----------SVPIEETIGEMKKLVEE--GKIK-----YIGLSEASPDTIRRAH 174 (345)
Q Consensus 113 ~~ve~SL~~Lg~d~iDl~~lH~~~~-----------~~~~~~~~~~l~~l~~~--G~ir-----~iGvS~~~~~~l~~~~ 174 (345)
+ |..-| +|.| -||.+. ...+++.|+.|+..++. |.|. -+|+.....+.++-+.
T Consensus 247 ~-----L~eAG---~dvy-nHNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~eEvie~m~ 317 (398)
T PTZ00413 247 K-----LANSP---LSVY-AHNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEEEVRQTLR 317 (398)
T ss_pred H-----HHhcC---CCEE-ecccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCCHHHHHHHHH
Confidence 2 33333 4433 366422 13578889999988874 3332 2565555544443333
Q ss_pred hc--CCCceeccccCccccc-----------c--cccchhHHHHhCCeEEeecCCCC
Q 019147 175 AV--HPITAVQLEWSLWARD-----------I--ENEIVPLCRELGIGIVPYCPLGR 216 (345)
Q Consensus 175 ~~--~~~~~~q~~~n~~~~~-----------~--~~~~~~~~~~~gi~v~a~spl~~ 216 (345)
.. ..++++.+. +++.+. + -..+-+.+.+.|...++.+||-.
T Consensus 318 dLrelGVDivtIG-QYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~sgPlVR 373 (398)
T PTZ00413 318 DLRTAGVSAVTLG-QYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCASGPLVR 373 (398)
T ss_pred HHHHcCCcEEeec-cccCCCcccCCceeccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 32 333333320 122221 1 14666778888999898888864
No 36
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=70.94 E-value=46 Score=28.68 Aligned_cols=145 Identities=11% Similarity=0.014 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhc----CCCCCeEEEeeccccccCccccccCCCHHHHHHHH
Q 019147 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCC 115 (345)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~----~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~v 115 (345)
+.+++.++++.+++.|++..|.- +..+..++.. ..+.+++++-= ..+.+.+++.+
T Consensus 10 d~~~~~~~v~~~l~~g~~~~~i~--------~~~l~p~m~~iG~~w~~gei~va~~-------------~~a~~~~~~~l 68 (197)
T TIGR02370 10 EEDDVVEGAQKALDAGIDPIELI--------EKGLMAGMGVVGKLFEDGELFLPHV-------------MMSADAMLAGI 68 (197)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHHHcCCCccHHHH-------------HHHHHHHHHHH
Confidence 77899999999999998866532 2334444433 13344443111 12344555555
Q ss_pred HHHHhhcCCC----ceeEEEeecCCCCCCHHHHHHHHHHHHHcCC-cceEecCCCcHHHHHHHhhcCCCceeccccCccc
Q 019147 116 EASLRRLDVE----YIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWA 190 (345)
Q Consensus 116 e~SL~~Lg~d----~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~ 190 (345)
......+... .---+++-.+..+.+--...-.-.-|+..|. |.++|. +-+.+.+.+.+....++++.+.+....
T Consensus 69 ~~l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~-~vp~e~~v~~~~~~~pd~v~lS~~~~~ 147 (197)
T TIGR02370 69 KVLTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGR-DVPIDTVVEKVKKEKPLMLTGSALMTT 147 (197)
T ss_pred HHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCC-CCCHHHHHHHHHHcCCCEEEEcccccc
Confidence 5555555421 1112334334333333333333445667786 777885 456677777777788888888776544
Q ss_pred cccc-ccchhHHHHhCC
Q 019147 191 RDIE-NEIVPLCRELGI 206 (345)
Q Consensus 191 ~~~~-~~~~~~~~~~gi 206 (345)
.... .++++.+++.|.
T Consensus 148 ~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 148 TMYGQKDINDKLKEEGY 164 (197)
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 3222 578888888853
No 37
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=70.05 E-value=13 Score=32.58 Aligned_cols=67 Identities=19% Similarity=0.223 Sum_probs=44.5
Q ss_pred HhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecC-CCcHHHHHHHhhcCCCceeccccC
Q 019147 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPITAVQLEWS 187 (345)
Q Consensus 119 L~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~n 187 (345)
+..+|.|++=+++........+.+.+-+....+ .+.+..+||. +.+++.+.++++...++++|+.-+
T Consensus 19 ~~~~Gad~iGfI~~~~S~R~V~~~~a~~i~~~~--~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg~ 86 (210)
T PRK01222 19 AAELGADAIGFVFYPKSPRYVSPEQAAELAAAL--PPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHGD 86 (210)
T ss_pred HHHcCCCEEEEccCCCCCCcCCHHHHHHHHHhC--CCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 345899999887433322223333332222222 3568899997 678899999999899999999653
No 38
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=69.82 E-value=2.2 Score=40.23 Aligned_cols=54 Identities=17% Similarity=0.324 Sum_probs=38.0
Q ss_pred cCCcceEecCCCcHHHHHHHhhcCC-CceeccccCcccccccccchhHHHHhCCe
Q 019147 154 EGKIKYIGLSEASPDTIRRAHAVHP-ITAVQLEWSLWARDIENEIVPLCRELGIG 207 (345)
Q Consensus 154 ~G~ir~iGvS~~~~~~l~~~~~~~~-~~~~q~~~n~~~~~~~~~~~~~~~~~gi~ 207 (345)
-|+||++||--++++.+.++..... -+..+.+..++....+..+++.|++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 4999999999999999998877632 33444444444333345778888888876
No 39
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=65.52 E-value=1.4e+02 Score=29.61 Aligned_cols=110 Identities=11% Similarity=0.066 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhc----CCCCCeEEEeeccccccCccccccCCCHHHHHHHH
Q 019147 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCC 115 (345)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~----~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~v 115 (345)
+.+.....++.|.++||..|=..++-.. .+.+-.+++. ...-.+.|+-... +.++.+++.+.+
T Consensus 103 pddvv~~fv~~a~~~Gidi~Rifd~lnd---~~n~~~ai~~ak~~G~~~~~~i~yt~s----------p~~t~~y~~~~a 169 (468)
T PRK12581 103 ADDIVDKFISLSAQNGIDVFRIFDALND---PRNIQQALRAVKKTGKEAQLCIAYTTS----------PVHTLNYYLSLV 169 (468)
T ss_pred cchHHHHHHHHHHHCCCCEEEEcccCCC---HHHHHHHHHHHHHcCCEEEEEEEEEeC----------CcCcHHHHHHHH
Confidence 3466778899999999998887776653 2333333332 1111122222221 234566777766
Q ss_pred HHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcH
Q 019147 116 EASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASP 167 (345)
Q Consensus 116 e~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~ 167 (345)
++ +..+|.+ .+.|-.........++.+.+..+++...+ -||+-.|+.
T Consensus 170 ~~-l~~~Gad---~I~IkDtaG~l~P~~v~~Lv~alk~~~~~-pi~~H~Hnt 216 (468)
T PRK12581 170 KE-LVEMGAD---SICIKDMAGILTPKAAKELVSGIKAMTNL-PLIVHTHAT 216 (468)
T ss_pred HH-HHHcCCC---EEEECCCCCCcCHHHHHHHHHHHHhccCC-eEEEEeCCC
Confidence 65 4567854 44444333333445566666666665443 477766543
No 40
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=65.15 E-value=47 Score=30.03 Aligned_cols=67 Identities=10% Similarity=-0.015 Sum_probs=42.2
Q ss_pred HHHHHHcCCcceEec-CCCcHHHHHHHhhc--CCCceeccccCcccccccccchhHHHHhCCeEEeecCCC
Q 019147 148 MKKLVEEGKIKYIGL-SEASPDTIRRAHAV--HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLG 215 (345)
Q Consensus 148 l~~l~~~G~ir~iGv-S~~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~ 215 (345)
|.+..++|+. .+|+ ...+...+.+++.. ..+.++-.++++++...-..++..|+..|+..+.+-|-.
T Consensus 10 lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~ 79 (256)
T PRK10558 10 FKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTN 79 (256)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 5555566874 4554 22332344444444 345556678888877654678888999999988876554
No 41
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=64.72 E-value=1.2e+02 Score=27.96 Aligned_cols=152 Identities=13% Similarity=0.095 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHHHHCC-CCeeec---CCC-----CCCCcHHHHHHHHHhcCCC-CCeEEEeeccccccCccccccCCCHH
Q 019147 40 SEEDGISIIKHAFSKG-ITFFDT---ADK-----YGPYTNEILLGKALKELPR-ENIQVATKFGFVELGFTSVIVKGTPE 109 (345)
Q Consensus 40 ~~~~~~~~l~~A~~~G-in~~DT---A~~-----Yg~G~sE~~lG~al~~~~R-~~~~I~tK~~~~~~~~~~~~~~~s~~ 109 (345)
+.++..+..+.+.+.| +..||- +++ |..+...+.+-+.++...+ -++-|..|+.+.. +
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~------------~ 169 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNV------------T 169 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCc------------h
Confidence 5677888888888898 899975 222 1222356667777665222 2677889986421 1
Q ss_pred HHHHHHHHHHhhcCCCceeEEE-eecC--CCC--C------------C--HHHHHHHHHHHHHcCCcceEecCC-CcHHH
Q 019147 110 YVRSCCEASLRRLDVEYIDLYY-QHRV--DTS--V------------P--IEETIGEMKKLVEEGKIKYIGLSE-ASPDT 169 (345)
Q Consensus 110 ~i~~~ve~SL~~Lg~d~iDl~~-lH~~--~~~--~------------~--~~~~~~~l~~l~~~G~ir~iGvS~-~~~~~ 169 (345)
.+. .+-+.|+..|.|.|++.- ++.. +.. . + ..-.++.+.++++.=.+--||+.. .+.+.
T Consensus 170 ~~~-~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~d 248 (301)
T PRK07259 170 DIV-EIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAED 248 (301)
T ss_pred hHH-HHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHH
Confidence 222 244557788888776531 1111 000 0 0 011456666676665688888887 47888
Q ss_pred HHHHhhcCCCceeccccCcccccc------cccchhHHHHhCC
Q 019147 170 IRRAHAVHPITAVQLEWSLWARDI------ENEIVPLCRELGI 206 (345)
Q Consensus 170 l~~~~~~~~~~~~q~~~n~~~~~~------~~~~~~~~~~~gi 206 (345)
+.+++... .+.+|+---++. ++ .+++-.++.++|.
T Consensus 249 a~~~l~aG-Ad~V~igr~ll~-~P~~~~~i~~~l~~~~~~~g~ 289 (301)
T PRK07259 249 AIEFIMAG-ASAVQVGTANFY-DPYAFPKIIEGLEAYLDKYGI 289 (301)
T ss_pred HHHHHHcC-CCceeEcHHHhc-CcHHHHHHHHHHHHHHHHcCC
Confidence 88887644 678886433332 22 1455566666664
No 42
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=64.68 E-value=1.1e+02 Score=27.60 Aligned_cols=103 Identities=12% Similarity=0.021 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhhcC-CCceecc
Q 019147 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH-PITAVQL 184 (345)
Q Consensus 106 ~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~-~~~~~q~ 184 (345)
.+++.+.+.+++.++ -|.|+||+=. .|......++.-+.+..+++.-.+ -|.|-+++++.++++++.. ..+ +-.
T Consensus 23 ~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~~~~~ee~~r~v~~i~~~~~~-piSIDT~~~~v~e~aL~~~~G~~-iIN 97 (252)
T cd00740 23 EDYDEALDVARQQVE-GGAQILDLNV--DYGGLDGVSAMKWLLNLLATEPTV-PLMLDSTNWEVIEAGLKCCQGKC-VVN 97 (252)
T ss_pred CCHHHHHHHHHHHHH-CCCCEEEECC--CCCCCCHHHHHHHHHHHHHHhcCC-cEEeeCCcHHHHHHHHhhCCCCc-EEE
Confidence 456777777777765 4999999854 233212223333333333322122 3788899999999998862 222 222
Q ss_pred ccCcccc-cccccchhHHHHhCCeEEeecC
Q 019147 185 EWSLWAR-DIENEIVPLCRELGIGIVPYCP 213 (345)
Q Consensus 185 ~~n~~~~-~~~~~~~~~~~~~gi~v~a~sp 213 (345)
..+.... .....+++.++++|..++.+..
T Consensus 98 sIs~~~~~e~~~~~~~~~~~~~~~vV~m~~ 127 (252)
T cd00740 98 SINLEDGEERFLKVARLAKEHGAAVVVLAF 127 (252)
T ss_pred eCCCCCCccccHHHHHHHHHhCCCEEEecc
Confidence 3333221 1124678899999999988654
No 43
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=64.21 E-value=41 Score=29.57 Aligned_cols=87 Identities=13% Similarity=0.053 Sum_probs=60.2
Q ss_pred eeEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhhcCCCceeccccCccccc-ccccchhHHHHh
Q 019147 127 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARD-IENEIVPLCREL 204 (345)
Q Consensus 127 iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~ 204 (345)
.++.++-.|-+.. -++.+.+|++...+. +.+=|.++.+.+..++....++++|+..+.+-.- .-.++..+|+++
T Consensus 120 ~~i~~iEeP~~~~----d~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~ 195 (229)
T cd00308 120 YGLAWIEEPCAPD----DLEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAF 195 (229)
T ss_pred cCCCeEECCCCcc----CHHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 4666676664432 256677788777666 4455567788887888777889999877654221 115788999999
Q ss_pred CCeEEeecCCCCc
Q 019147 205 GIGIVPYCPLGRG 217 (345)
Q Consensus 205 gi~v~a~spl~~G 217 (345)
|+.++..+.+..|
T Consensus 196 gi~~~~~~~~~s~ 208 (229)
T cd00308 196 GIRVMVHGTLESS 208 (229)
T ss_pred CCEEeecCCCCCH
Confidence 9999987766544
No 44
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=63.71 E-value=88 Score=27.71 Aligned_cols=84 Identities=11% Similarity=0.044 Sum_probs=44.1
Q ss_pred HHHhhcCCCceeEEEeecCCCCCCHH-HHHHHHHHHHHcCCcceEecCC-CcHHHHHHHhhcCCCceeccccCcccccc-
Q 019147 117 ASLRRLDVEYIDLYYQHRVDTSVPIE-ETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQLEWSLWARDI- 193 (345)
Q Consensus 117 ~SL~~Lg~d~iDl~~lH~~~~~~~~~-~~~~~l~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~n~~~~~~- 193 (345)
+.++.+| +|.+.+|..+...... --|+.++++++.-.+.-|..-. .+++.+.++++....+.+++---+.....
T Consensus 156 ~~l~~~G---~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~~ 232 (243)
T cd04731 156 KEVEELG---AGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYT 232 (243)
T ss_pred HHHHHCC---CCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCCC
Confidence 4455666 5556666654321111 1255566666655566565554 46778888777666666665333322211
Q ss_pred cccchhHHHH
Q 019147 194 ENEIVPLCRE 203 (345)
Q Consensus 194 ~~~~~~~~~~ 203 (345)
..++..+|++
T Consensus 233 ~~~~~~~~~~ 242 (243)
T cd04731 233 IAELKEYLAE 242 (243)
T ss_pred HHHHHHHHhh
Confidence 1345555554
No 45
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=63.16 E-value=64 Score=29.39 Aligned_cols=66 Identities=12% Similarity=0.008 Sum_probs=40.1
Q ss_pred HHHHHHcCCcceEec-CCCcHHHHHHHhhcC--CCceeccccCcccccccccchhHHHHhCCeEEeecCC
Q 019147 148 MKKLVEEGKIKYIGL-SEASPDTIRRAHAVH--PITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPL 214 (345)
Q Consensus 148 l~~l~~~G~ir~iGv-S~~~~~~l~~~~~~~--~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl 214 (345)
|.+..++|+.- +|+ .......+.+++... ++.++-.++++++......++..++..|+..+++-|-
T Consensus 9 lk~~L~~G~~~-~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~ 77 (267)
T PRK10128 9 FKEGLRKGEVQ-IGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVE 77 (267)
T ss_pred HHHHHHcCCce-EEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCC
Confidence 45555667753 554 233323344444443 4445567888887764467888888888888776554
No 46
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=63.06 E-value=1.5e+02 Score=28.63 Aligned_cols=152 Identities=14% Similarity=0.087 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHH-CCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeeccccccCccccccCCCHHHHHHHHHHH
Q 019147 40 SEEDGISIIKHAFS-KGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEAS 118 (345)
Q Consensus 40 ~~~~~~~~l~~A~~-~Gin~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~S 118 (345)
+.++..+.++.+.+ .|++.|=.--.-.....+.-.=+++++.- .++.|..-.. ..++++.. .+.
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v~avRea~-~~~~l~vDaN----------~~w~~~~A----~~~ 232 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGVLPGEEEIEAVKALAEAF-PGARLRLDPN----------GAWSLETA----IRL 232 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCCCCHHHHHHHHHHHHHhC-CCCcEEEeCC----------CCcCHHHH----HHH
Confidence 55666666677765 69997743210001011111123343311 1333333221 12344433 333
Q ss_pred HhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhhcCCCceeccccCccccc-cccc
Q 019147 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARD-IENE 196 (345)
Q Consensus 119 L~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~ 196 (345)
+++|. - ++.++--|-. -++.+.+|++...+. +.|-|.++.+++..+++..-++++|......-.- .-.+
T Consensus 233 ~~~l~--~-~l~~iEeP~~------d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~k 303 (395)
T cd03323 233 AKELE--G-VLAYLEDPCG------GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVR 303 (395)
T ss_pred HHhcC--c-CCCEEECCCC------CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHHH
Confidence 34443 2 6666766643 377888888887666 6666778888999998888899998876643211 1258
Q ss_pred chhHHHHhCCeEEeecCCC
Q 019147 197 IVPLCRELGIGIVPYCPLG 215 (345)
Q Consensus 197 ~~~~~~~~gi~v~a~spl~ 215 (345)
+...|+.+||.+..++...
T Consensus 304 ia~~A~~~gi~~~~h~~~e 322 (395)
T cd03323 304 VAQVCETWGLGWGMHSNNH 322 (395)
T ss_pred HHHHHHHcCCeEEEecCcc
Confidence 8999999999998877653
No 47
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=61.41 E-value=95 Score=29.10 Aligned_cols=95 Identities=13% Similarity=0.195 Sum_probs=52.2
Q ss_pred HHHhhcCCCceeEEEeec-CCC-CCCHHHHHHHHHHHHHcCCcce-EecCCC---cHHHHHHHhhcCC-CceeccccCcc
Q 019147 117 ASLRRLDVEYIDLYYQHR-VDT-SVPIEETIGEMKKLVEEGKIKY-IGLSEA---SPDTIRRAHAVHP-ITAVQLEWSLW 189 (345)
Q Consensus 117 ~SL~~Lg~d~iDl~~lH~-~~~-~~~~~~~~~~l~~l~~~G~ir~-iGvS~~---~~~~l~~~~~~~~-~~~~q~~~n~~ 189 (345)
+.-+.+|.|+||+-+.-. |+. +...++....++...+.=.+-- |..|.. +++.++++++... -..+-...|
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat-- 160 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAE-- 160 (319)
T ss_pred HHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECC--
Confidence 445688989888754322 221 1233444444444433323332 555532 6788888877532 111111111
Q ss_pred cccccccchhHHHHhCCeEEeecCC
Q 019147 190 ARDIENEIVPLCRELGIGIVPYCPL 214 (345)
Q Consensus 190 ~~~~~~~~~~~~~~~gi~v~a~spl 214 (345)
...-+.+.+.|+++|..|++.+|.
T Consensus 161 -~en~~~i~~lA~~y~~~Vva~s~~ 184 (319)
T PRK04452 161 -EDNYKKIAAAAMAYGHAVIAWSPL 184 (319)
T ss_pred -HHHHHHHHHHHHHhCCeEEEEcHH
Confidence 111258999999999999987654
No 48
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=61.29 E-value=1.1e+02 Score=26.40 Aligned_cols=149 Identities=15% Similarity=0.124 Sum_probs=82.5
Q ss_pred CHHHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhc----CCCCCeEEEeeccccccCccccccCCCHHHHHHHH
Q 019147 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCC 115 (345)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~----~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~v 115 (345)
|.+++.+++..+++.|+...|.- +..+..+++. -.+++++++-=. ...+.+++.+
T Consensus 9 D~~~~~~~v~~~l~~g~~~~~i~--------~~~l~p~m~~vG~~w~~~~i~va~e~-------------~as~~~~~~l 67 (201)
T cd02070 9 DEEETVELVKKALEAGIDPQDII--------EEGLAPGMDIVGDKYEEGEIFVPELL-------------MAADAMKAGL 67 (201)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHHHccCCeeHHHHH-------------HHHHHHHHHH
Confidence 77889999999999997654422 2334444433 133444443211 1233444444
Q ss_pred HHHHhhcCCCc---eeEEEeecCCCCCCHHHHHHHHHHHHHcCC-cceEecCCCcHHHHHHHhhcCCCceeccccCcccc
Q 019147 116 EASLRRLDVEY---IDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR 191 (345)
Q Consensus 116 e~SL~~Lg~d~---iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~ 191 (345)
......+.... ---+++-.+..+.+--...-.-.-|+..|. |.++| .+.+.+.+.+.+....++++-+.++.-..
T Consensus 68 ~~l~~~~~~~~~~~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG-~~~p~~~l~~~~~~~~~d~v~lS~~~~~~ 146 (201)
T cd02070 68 DLLKPLLGKSKSAKKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLG-RDVPPEEFVEAVKEHKPDILGLSALMTTT 146 (201)
T ss_pred HHHHHHHhhcCCCCCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEecccccc
Confidence 44444443321 113444444433333233333345677887 56678 56677888887777888888777654433
Q ss_pred cc-cccchhHHHHhC----CeEEe
Q 019147 192 DI-ENEIVPLCRELG----IGIVP 210 (345)
Q Consensus 192 ~~-~~~~~~~~~~~g----i~v~a 210 (345)
-. -.++++.+++.+ +.|+.
T Consensus 147 ~~~~~~~i~~lr~~~~~~~~~i~v 170 (201)
T cd02070 147 MGGMKEVIEALKEAGLRDKVKVMV 170 (201)
T ss_pred HHHHHHHHHHHHHCCCCcCCeEEE
Confidence 21 256777777774 45554
No 49
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=60.59 E-value=71 Score=29.80 Aligned_cols=107 Identities=15% Similarity=0.162 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeeccccccCccccccCCCHHHHHHHHHHHHhh
Q 019147 42 EDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRR 121 (345)
Q Consensus 42 ~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~ 121 (345)
..-+++|+.+-++|| .+|.|+. +++.+=+++.- -+..+|+|-.....- .++.+.--.++++...++
T Consensus 149 ~~Gk~lV~~~N~LgI-iiDlSH~-----s~kt~~Dvl~~--s~~PviaSHSN~~al------~~h~RNl~D~qlkaI~~~ 214 (313)
T COG2355 149 PFGKELVREMNELGI-IIDLSHL-----SDKTFWDVLDL--SKAPVVASHSNARAL------VDHPRNLSDEQLKAIAET 214 (313)
T ss_pred HHHHHHHHHHHhcCC-EEEeccc-----CCccHHHHHhc--cCCceEEecCCchhc------cCCCCCCCHHHHHHHHhc
Confidence 346899999999999 9999986 66777777763 555677766544321 223333334444555555
Q ss_pred cCCCceeEEEeecC-----CCCCCHHHHHHHHHHHHHcCCcceEecCC
Q 019147 122 LDVEYIDLYYQHRV-----DTSVPIEETIGEMKKLVEEGKIKYIGLSE 164 (345)
Q Consensus 122 Lg~d~iDl~~lH~~-----~~~~~~~~~~~~l~~l~~~G~ir~iGvS~ 164 (345)
=| -|.+.++-.. ....+++++.+.++..++.+=+++||+.+
T Consensus 215 gG--vIgv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGs 260 (313)
T COG2355 215 GG--VIGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGS 260 (313)
T ss_pred CC--EEEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcCcceeEecc
Confidence 44 2333333221 13457899999999999999999999975
No 50
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=60.40 E-value=1.5e+02 Score=27.70 Aligned_cols=154 Identities=14% Similarity=0.068 Sum_probs=91.6
Q ss_pred CHHHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeeccccccCccccccCCCHHHHHHHHHHHH
Q 019147 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (345)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL 119 (345)
+.++..+.+..+.+.|++.|=.-- +. ..+.-+=+++++.. .++.|.-=.. ..++++.+. .-+.|
T Consensus 132 ~~~~~~~~a~~~~~~Gf~~~KiKv--~~-~~d~~~v~~vr~~~-~~~~l~vDaN----------~~~~~~~a~--~~~~l 195 (324)
T TIGR01928 132 NDEQMLKQIESLKATGYKRIKLKI--TP-QIMHQLVKLRRLRF-PQIPLVIDAN----------ESYDLQDFP--RLKEL 195 (324)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEe--CC-chhHHHHHHHHHhC-CCCcEEEECC----------CCCCHHHHH--HHHHH
Confidence 446667777888899999873211 11 12222334444422 2322222111 123454432 12333
Q ss_pred hhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhhcCCCceeccccCccccc-ccccc
Q 019147 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARD-IENEI 197 (345)
Q Consensus 120 ~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~ 197 (345)
+. .++.++--|-. .+.++.+.+|++.-.+. +.|=|.++...+..++....++++|+..+-+-.- .-.++
T Consensus 196 ~~-----~~~~~iEeP~~----~~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~ 266 (324)
T TIGR01928 196 DR-----YQLLYIEEPFK----IDDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKA 266 (324)
T ss_pred hh-----CCCcEEECCCC----hhHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHH
Confidence 33 35556665532 23467788888876655 5677889999999999888899999876653221 11578
Q ss_pred hhHHHHhCCeEEeecCCCCcc
Q 019147 198 VPLCRELGIGIVPYCPLGRGF 218 (345)
Q Consensus 198 ~~~~~~~gi~v~a~spl~~G~ 218 (345)
...|+.+|+.++..+.+..|+
T Consensus 267 ~~~A~~~gi~~~~~~~~es~i 287 (324)
T TIGR01928 267 IETCREHGAKVWIGGMLETGI 287 (324)
T ss_pred HHHHHHcCCeEEEcceEcccH
Confidence 999999999999766555543
No 51
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=60.10 E-value=57 Score=29.24 Aligned_cols=112 Identities=25% Similarity=0.226 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHHCCCCeeecCCCCCC----------------C--cHHHHHHHHHhcCCCCCeEEEeeccccccCcc
Q 019147 39 LSEEDGISIIKHAFSKGITFFDTADKYGP----------------Y--TNEILLGKALKELPRENIQVATKFGFVELGFT 100 (345)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~----------------G--~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~ 100 (345)
.+.++-.++.++|-+.||.||=|.-.-.. + .+-.+|-+.-+ ....++|+|=..
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~--tgkPvIlSTG~s------- 123 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAK--TGKPVILSTGMS------- 123 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHT--T-S-EEEE-TT--------
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHH--hCCcEEEECCCC-------
Confidence 47788999999999999999976642210 0 01111111111 233355555432
Q ss_pred ccccCCCHHHHHHHHHHHHhhcCCCceeEEEeecCCCC-CCHHH-HHHHHHHHHHcCCcceEecCCCcHHH
Q 019147 101 SVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-VPIEE-TIGEMKKLVEEGKIKYIGLSEASPDT 169 (345)
Q Consensus 101 ~~~~~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~-~~~~~-~~~~l~~l~~~G~ir~iGvS~~~~~~ 169 (345)
+.+.|.++++-..++-+ -++.++|..... .+.++ -+..+..|++.=- --||.|.|+...
T Consensus 124 ------tl~EI~~Av~~~~~~~~---~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g~ 184 (241)
T PF03102_consen 124 ------TLEEIERAVEVLREAGN---EDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDGI 184 (241)
T ss_dssp -------HHHHHHHHHHHHHHCT-----EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSSS
T ss_pred ------CHHHHHHHHHHHHhcCC---CCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCCc
Confidence 45677777766644443 689999988543 44444 3677777775433 468999988643
No 52
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=59.71 E-value=52 Score=26.75 Aligned_cols=63 Identities=11% Similarity=0.185 Sum_probs=46.3
Q ss_pred CCCCeEEEeeccccccCccccccCCCHHHHHHHHHHHHhhcC--CCceeEEEeecCCCCCCHHHHHHHHHHHHHc
Q 019147 82 PRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLD--VEYIDLYYQHRVDTSVPIEETIGEMKKLVEE 154 (345)
Q Consensus 82 ~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~Lg--~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~ 154 (345)
.|=-+.|+-|++.- ..+..|++.+.++.+.+. ....|++++.......++.++...|..+.++
T Consensus 46 ~RlG~sVSKKvg~A----------V~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 46 CKVGITVSKKFGKA----------HQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred ceEEEEEecccccc----------hhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 35557788887642 347788888888888764 3568999999887767778877777777665
No 53
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=59.49 E-value=1.6e+02 Score=29.01 Aligned_cols=113 Identities=12% Similarity=0.073 Sum_probs=59.9
Q ss_pred CCCCCCCcHHHHHHHHHhc----CC-CCCeEEEeeccccccCccccccCCCHHHHHHHHHHHHh-hcCCCceeEEEeecC
Q 019147 62 ADKYGPYTNEILLGKALKE----LP-RENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLR-RLDVEYIDLYYQHRV 135 (345)
Q Consensus 62 A~~Yg~G~sE~~lG~al~~----~~-R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~-~Lg~d~iDl~~lH~~ 135 (345)
.-.|| .|+-|-++|++ .+ .+-++|.|-+....- .-+.+.+.+.+++-++ ...--.+.++.+|.|
T Consensus 65 d~VfG---G~~~L~~~I~~~~~~~~~p~~I~V~tTC~~eiI-------GDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tp 134 (454)
T cd01973 65 SAVFG---GAKRVEEGVLVLARRYPDLRVIPIITTCSTEII-------GDDIEGVIRKLNEALKEEFPDREVHLIPVHTP 134 (454)
T ss_pred ceEEC---cHHHHHHHHHHHHHhcCCCCEEEEECCchHhhh-------ccCHHHHHHHHHhhhhhccCCCCCeEEEeeCC
Confidence 34677 57777788776 22 244677777653221 1123333333332221 111013789999999
Q ss_pred CCCCCH-HHHHHHHHHHHH--------cCCcceEecCC--CcHHHHHHHhhcCCCceecc
Q 019147 136 DTSVPI-EETIGEMKKLVE--------EGKIKYIGLSE--ASPDTIRRAHAVHPITAVQL 184 (345)
Q Consensus 136 ~~~~~~-~~~~~~l~~l~~--------~G~ir~iGvS~--~~~~~l~~~~~~~~~~~~q~ 184 (345)
+..... .....+++.+.+ +++|--||-.+ .+.+.++++++...+.++.+
T Consensus 135 gF~Gs~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v~~~ 194 (454)
T cd01973 135 SFKGSMVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEANIL 194 (454)
T ss_pred CcCCCHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEEe
Confidence 876432 222223333322 46677786433 23466777777777776654
No 54
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=59.36 E-value=29 Score=30.32 Aligned_cols=83 Identities=16% Similarity=0.217 Sum_probs=52.8
Q ss_pred HhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCC-cceEecC-CCcHHHHHHHhhcCCCceeccccCccccccccc
Q 019147 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLS-EASPDTIRRAHAVHPITAVQLEWSLWARDIENE 196 (345)
Q Consensus 119 L~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~ 196 (345)
...+|.||+=+++.-........ +..+++.+.-. ++.+||. |.+.+.+.++++...++.+|+.-.. ..+
T Consensus 18 a~~~gad~iG~If~~~SpR~Vs~----~~a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~e-----~~~ 88 (208)
T COG0135 18 AAKAGADYIGFIFVPKSPRYVSP----EQAREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGDE-----DPE 88 (208)
T ss_pred HHHcCCCEEEEEEcCCCCCcCCH----HHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCCC-----CHH
Confidence 34678899887666532233333 33334444433 8899997 5788889999999999999986442 234
Q ss_pred chhHHHHhC-CeEEe
Q 019147 197 IVPLCRELG-IGIVP 210 (345)
Q Consensus 197 ~~~~~~~~g-i~v~a 210 (345)
.++..++.. +.|+-
T Consensus 89 ~~~~l~~~~~~~v~k 103 (208)
T COG0135 89 YIDQLKEELGVPVIK 103 (208)
T ss_pred HHHHHHhhcCCceEE
Confidence 555555543 55553
No 55
>PLN02389 biotin synthase
Probab=58.66 E-value=1.6e+02 Score=28.40 Aligned_cols=101 Identities=19% Similarity=0.198 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHHCCCCeeecCCCC-CC-C--cHHHHHHHHHhcCCCCCeEEEeeccccccCccccccCCCHHHHHHH
Q 019147 39 LSEEDGISIIKHAFSKGITFFDTADKY-GP-Y--TNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSC 114 (345)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA~~Y-g~-G--~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ 114 (345)
.+.++..+.++.+.+.|++.|--.... +. + ..-..+-+.++.+....+.|....|. .+.+.+
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~-----------l~~E~l--- 181 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGM-----------LEKEQA--- 181 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCC-----------CCHHHH---
Confidence 578899999999999999987432111 11 1 11234555565533333445443332 223333
Q ss_pred HHHHHhhcCCCceeEEEeec-C------CCCCCHHHHHHHHHHHHHcCC
Q 019147 115 CEASLRRLDVEYIDLYYQHR-V------DTSVPIEETIGEMKKLVEEGK 156 (345)
Q Consensus 115 ve~SL~~Lg~d~iDl~~lH~-~------~~~~~~~~~~~~l~~l~~~G~ 156 (345)
+.|+..|+|++-+- +.. + -....+++.++.++.+++.|.
T Consensus 182 --~~LkeAGld~~~~~-LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 182 --AQLKEAGLTAYNHN-LDTSREYYPNVITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred --HHHHHcCCCEEEee-ecCChHHhCCcCCCCCHHHHHHHHHHHHHcCC
Confidence 33555576664331 121 1 012357888999999999985
No 56
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=58.46 E-value=46 Score=29.26 Aligned_cols=81 Identities=12% Similarity=0.279 Sum_probs=53.7
Q ss_pred CcHHHHHHHhhcCCCceecc----ccCccccccc---ccchhHHHHhCCeEEeecCCCCcccCCCCccCCCCCccccccC
Q 019147 165 ASPDTIRRAHAVHPITAVQL----EWSLWARDIE---NEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLKFF 237 (345)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~q~----~~n~~~~~~~---~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~ 237 (345)
.++.+++.+.+...+.++-+ +||.|+.... .++.+|++.-|-.-+..-|+..|-..+.
T Consensus 49 ~p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~~--------------- 113 (272)
T COG4130 49 TPAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWPGT--------------- 113 (272)
T ss_pred CCHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCc---------------
Confidence 45677777777665444332 6676665321 6899999999999999999987532221
Q ss_pred CCCCCcchhhhHHHHHHHHHHHHHcCC
Q 019147 238 PRFNGENLDRNKSIYFRIENLAKKYKC 264 (345)
Q Consensus 238 ~~~~~~~~~~~~~~~~~l~~la~~~g~ 264 (345)
....+.....+++++.+-.++|+
T Consensus 114 ----~vr~~~lv~AlkaLkpil~~~gi 136 (272)
T COG4130 114 ----AVRREDLVEALKALKPILDEYGI 136 (272)
T ss_pred ----ccchHHHHHHHHHhhHHHHHhCc
Confidence 11123455667788888888876
No 57
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=58.30 E-value=1.4e+02 Score=26.84 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=62.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCeeecCCC-----------CCCCcHHHHHHHHHhcCCCCCeEEEeeccccccCccccccCC
Q 019147 38 PLSEEDGISIIKHAFSKGITFFDTADK-----------YGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKG 106 (345)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gin~~DTA~~-----------Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~ 106 (345)
..+.++..++++...+.||..++.... |..-..++.+.+..+..+..++.+..-.+ . .
T Consensus 18 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~--~---------~ 86 (263)
T cd07943 18 QFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPG--I---------G 86 (263)
T ss_pred ecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCC--c---------c
Confidence 357788999999999999999998721 11112445554444433333332221100 0 1
Q ss_pred CHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecC---CCcHHHHHHHh
Q 019147 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS---EASPDTIRRAH 174 (345)
Q Consensus 107 s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS---~~~~~~l~~~~ 174 (345)
..+. ++..++ .|++.+-++.- ..+.....+.++..++.|.--.+.++ .++++.+.++.
T Consensus 87 ~~~~----i~~a~~-~g~~~iri~~~-----~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~ 147 (263)
T cd07943 87 TVDD----LKMAAD-LGVDVVRVATH-----CTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQA 147 (263)
T ss_pred CHHH----HHHHHH-cCCCEEEEEec-----hhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHH
Confidence 1333 344433 36665555331 12245667778888888875555542 24555554433
No 58
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=57.49 E-value=47 Score=32.29 Aligned_cols=86 Identities=12% Similarity=-0.026 Sum_probs=59.9
Q ss_pred eEEEeecCCCCCCHHHHHHHHHHHHHc------CCcceEecCCCcHHHHHHHhhcCCCceeccccCcccccc-cccchhH
Q 019147 128 DLYYQHRVDTSVPIEETIGEMKKLVEE------GKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDI-ENEIVPL 200 (345)
Q Consensus 128 Dl~~lH~~~~~~~~~~~~~~l~~l~~~------G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~-~~~~~~~ 200 (345)
++ ++-.|-+..+.++-++.+.+|+++ ..=-..+=|.++.+.+..+++..-.+++|+..+-+-.-. -.++.++
T Consensus 265 ~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~l 343 (408)
T TIGR01502 265 HL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMY 343 (408)
T ss_pred Ce-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHH
Confidence 44 677775443334457777777765 333344556788999999998888899999877532211 2588999
Q ss_pred HHHhCCeEEeecCC
Q 019147 201 CRELGIGIVPYCPL 214 (345)
Q Consensus 201 ~~~~gi~v~a~spl 214 (345)
|+.+||.++..+..
T Consensus 344 A~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 344 CKANGMGAYVGGTC 357 (408)
T ss_pred HHHcCCEEEEeCCC
Confidence 99999999986654
No 59
>PRK13796 GTPase YqeH; Provisional
Probab=57.45 E-value=1.8e+02 Score=27.74 Aligned_cols=122 Identities=14% Similarity=0.174 Sum_probs=78.9
Q ss_pred CCHHHHHHHHHHHHHCC---CCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeeccccccCccccccCCCHHHHHHHH
Q 019147 39 LSEEDGISIIKHAFSKG---ITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCC 115 (345)
Q Consensus 39 ~~~~~~~~~l~~A~~~G---in~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~v 115 (345)
++.++..++++..-+.- +-.+|..+.-+. -...+.+... .+.-++|.+|+-.... ....+.+.+-+
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s--~~~~L~~~~~--~kpviLViNK~DLl~~-------~~~~~~i~~~l 122 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNGS--WIPGLHRFVG--NNPVLLVGNKADLLPK-------SVKKNKVKNWL 122 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCCc--hhHHHHHHhC--CCCEEEEEEchhhCCC-------ccCHHHHHHHH
Confidence 46667777777776655 456786664432 2333444332 4567889999864321 12345666666
Q ss_pred HHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHH
Q 019147 116 EASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRR 172 (345)
Q Consensus 116 e~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~ 172 (345)
+.-.+.+|....|++.+-.-. ...++++++.+.++.+.+.+-.+|.+|..-..|--
T Consensus 123 ~~~~k~~g~~~~~v~~vSAk~-g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLiN 178 (365)
T PRK13796 123 RQEAKELGLRPVDVVLISAQK-GHGIDELLEAIEKYREGRDVYVVGVTNVGKSTLIN 178 (365)
T ss_pred HHHHHhcCCCcCcEEEEECCC-CCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHHH
Confidence 666777776555777765443 34578888888888777889999999987665433
No 60
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=57.04 E-value=89 Score=31.16 Aligned_cols=66 Identities=8% Similarity=0.070 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHHcCCcce----EecCCCcHHHHHHHhhc---CCCceeccccCcccccccccchhHHHHhCC
Q 019147 139 VPIEETIGEMKKLVEEGKIKY----IGLSEASPDTIRRAHAV---HPITAVQLEWSLWARDIENEIVPLCRELGI 206 (345)
Q Consensus 139 ~~~~~~~~~l~~l~~~G~ir~----iGvS~~~~~~l~~~~~~---~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi 206 (345)
...++..++++.+++.|.... +|+-+.+.+.+++.++. .+++ ++.++++.+-+..++.+.+++.+.
T Consensus 320 ~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~--~~~~~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 320 TTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPD--QANWLMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCC--ceEEEEecCCCCcHHHHHHHhhcc
Confidence 346778899999999997433 46667777776664443 3344 344567777666788888887653
No 61
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=56.87 E-value=1.8e+02 Score=27.59 Aligned_cols=147 Identities=11% Similarity=0.043 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeeccccccCccccccCCCHHHHHHHHHHHH
Q 019147 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (345)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL 119 (345)
+.++..+.+..+.+.|++.|=.- -.+.+ +++++.-.+++.|..-.. ..++.+.. .+-+
T Consensus 126 ~~~~~~~~a~~~~~~Gf~~~KiK-------v~~~v-~avre~~G~~~~l~vDaN----------~~w~~~~A----~~~~ 183 (361)
T cd03322 126 DIPELLEAVERHLAQGYRAIRVQ-------LPKLF-EAVREKFGFEFHLLHDVH----------HRLTPNQA----ARFG 183 (361)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeC-------HHHHH-HHHHhccCCCceEEEECC----------CCCCHHHH----HHHH
Confidence 44556667777788898876421 01222 333432223443432221 12344432 2223
Q ss_pred hhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhhcCCCceeccccCccccc-ccccc
Q 019147 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARD-IENEI 197 (345)
Q Consensus 120 ~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~ 197 (345)
+.|. .+++.++--|-.. +-++.+.+|++...+. +.|=|-++...+..++....++++|+....+-.- .-.++
T Consensus 184 ~~l~--~~~l~~iEeP~~~----~d~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~i 257 (361)
T cd03322 184 KDVE--PYRLFWMEDPTPA----ENQEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKI 257 (361)
T ss_pred HHhh--hcCCCEEECCCCc----ccHHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHH
Confidence 3332 2466667666432 2377788888887766 6677888999999998888899999877653211 12588
Q ss_pred hhHHHHhCCeEEeecCC
Q 019147 198 VPLCRELGIGIVPYCPL 214 (345)
Q Consensus 198 ~~~~~~~gi~v~a~spl 214 (345)
.+.|+++|+.++.++..
T Consensus 258 a~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 258 ADLASLYGVRTGWHGPT 274 (361)
T ss_pred HHHHHHcCCeeeccCCC
Confidence 99999999999875443
No 62
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=56.44 E-value=1.5e+02 Score=26.72 Aligned_cols=54 Identities=7% Similarity=0.131 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHHCCCCeeecCCCCCCCc----H--HHHHHHHHhcCCCCCeEEEeecc
Q 019147 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYT----N--EILLGKALKELPRENIQVATKFG 93 (345)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~----s--E~~lG~al~~~~R~~~~I~tK~~ 93 (345)
+|.+...+.++..++.|++-|-..-..|.+. . ++++..+.+. ...++-|..-++
T Consensus 15 iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~-~~~~~~vi~gv~ 74 (281)
T cd00408 15 VDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEA-VAGRVPVIAGVG 74 (281)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHH-hCCCCeEEEecC
Confidence 5888899999999999999887666555441 2 3444444443 234444444444
No 63
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=56.19 E-value=94 Score=30.83 Aligned_cols=168 Identities=15% Similarity=0.127 Sum_probs=92.2
Q ss_pred CHHHHHHHHHHHHH-CCCCeeecCCCCCCCc--HHHHHHHHHhc----CCCCCeEEEeecccccc------------Ccc
Q 019147 40 SEEDGISIIKHAFS-KGITFFDTADKYGPYT--NEILLGKALKE----LPRENIQVATKFGFVEL------------GFT 100 (345)
Q Consensus 40 ~~~~~~~~l~~A~~-~Gin~~DTA~~Yg~G~--sE~~lG~al~~----~~R~~~~I~tK~~~~~~------------~~~ 100 (345)
+.+...++++.+++ .+++.=|.+..+..-. .-..|.++-+. .--+.+++.+=+..... ...
T Consensus 29 ~~~~v~~il~Kal~~~~Ls~eEal~LL~~~~~~~le~L~~~A~~ir~~~~Gn~I~lfapLyiSN~C~n~C~YCgfs~~n~ 108 (469)
T PRK09613 29 DKDEIREILEKAKEKKGLSPEEAAVLLNVEDPELLEEIFEAAREIKEKIYGNRIVLFAPLYISNYCVNNCVYCGFRRSNK 108 (469)
T ss_pred CHHHHHHHHHHHHcCCCCCHHHHHHHHcCCChhHHHHHHHHHHHHHHHHcCCEEEEEEeccccCCCCCCCccCCCccCCC
Confidence 56668888888887 4666555554443211 11223333222 11233333332211100 001
Q ss_pred -ccccCCCHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHH----cCCcceEecC--CCcHHHHHHH
Q 019147 101 -SVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVE----EGKIKYIGLS--EASPDTIRRA 173 (345)
Q Consensus 101 -~~~~~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~----~G~ir~iGvS--~~~~~~l~~~ 173 (345)
......+.+.|.+.++. ++.+|...+-|+.=..| ...+++.+.+.++.+++ .|.++.|+|+ ..+.++++++
T Consensus 109 ~i~r~~Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p-~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~L 186 (469)
T PRK09613 109 EIKRKKLTQEEIREEVKA-LEDMGHKRLALVAGEDP-PNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKL 186 (469)
T ss_pred CCCceECCHHHHHHHHHH-HHHCCCCEEEEEeCCCC-CCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHH
Confidence 11234789999999875 57899877766422222 23456767777777765 5778777775 3677888887
Q ss_pred hhcC--CCceeccccCc-----ccc-----ccc--ccchhHHHHhCCeEE
Q 019147 174 HAVH--PITAVQLEWSL-----WAR-----DIE--NEIVPLCRELGIGIV 209 (345)
Q Consensus 174 ~~~~--~~~~~q~~~n~-----~~~-----~~~--~~~~~~~~~~gi~v~ 209 (345)
.+.+ ...++|--||. +++ +.+ -..++.+++.||.-+
T Consensus 187 keaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~V 236 (469)
T PRK09613 187 KEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDV 236 (469)
T ss_pred HHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCee
Confidence 6653 33445555542 111 111 356788888888743
No 64
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=56.03 E-value=1.8e+02 Score=27.45 Aligned_cols=97 Identities=18% Similarity=0.114 Sum_probs=47.4
Q ss_pred CCCeEEEeeccccccCccccccCCCHHHHHHHHHHHHhhcCCCceeEE-Eeec-CCCC----CCHHHHHHHHHHHHHcCC
Q 019147 83 RENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLY-YQHR-VDTS----VPIEETIGEMKKLVEEGK 156 (345)
Q Consensus 83 R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~Lg~d~iDl~-~lH~-~~~~----~~~~~~~~~l~~l~~~G~ 156 (345)
..++.|..|++...... ...+.+... .+-+-|+.+|+|+|++- -.|. +... .+........+++++.=.
T Consensus 202 G~d~~v~iRi~~~D~~~----~g~~~~e~~-~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~ 276 (353)
T cd02930 202 GEDFIIIYRLSMLDLVE----GGSTWEEVV-ALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVD 276 (353)
T ss_pred CCCceEEEEecccccCC----CCCCHHHHH-HHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCC
Confidence 35677777776432110 112344333 34445677787777762 1231 1110 000112333445555545
Q ss_pred cceEecCC-CcHHHHHHHhhcCCCceecc
Q 019147 157 IKYIGLSE-ASPDTIRRAHAVHPITAVQL 184 (345)
Q Consensus 157 ir~iGvS~-~~~~~l~~~~~~~~~~~~q~ 184 (345)
+.-++.-. ++++.++++++....|.+++
T Consensus 277 iPVi~~G~i~~~~~a~~~i~~g~~D~V~~ 305 (353)
T cd02930 277 IPVIASNRINTPEVAERLLADGDADMVSM 305 (353)
T ss_pred CCEEEcCCCCCHHHHHHHHHCCCCChhHh
Confidence 55555544 46677777777666666554
No 65
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=55.59 E-value=78 Score=28.47 Aligned_cols=67 Identities=9% Similarity=-0.095 Sum_probs=40.3
Q ss_pred HHHHHHcCCcceEec-CCCcHHHHHHHhhcC--CCceeccccCcccccccccchhHHHHhCCeEEeecCCC
Q 019147 148 MKKLVEEGKIKYIGL-SEASPDTIRRAHAVH--PITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLG 215 (345)
Q Consensus 148 l~~l~~~G~ir~iGv-S~~~~~~l~~~~~~~--~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~ 215 (345)
|.+..++|+. .+|+ ++.+...+.+++... .+.++-.++.+++...-..++..++..|+..+.+-|-.
T Consensus 3 lk~~l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~ 72 (249)
T TIGR03239 3 FRQDLLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWN 72 (249)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 3444455764 3554 333333444444443 45556668888876544678888888898888766553
No 66
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=55.28 E-value=1.6e+02 Score=28.48 Aligned_cols=151 Identities=15% Similarity=0.175 Sum_probs=86.6
Q ss_pred CHHHHHHHHHHHHHCCCCee-ecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeecccccc--CccccccCCCHHHHHHHHH
Q 019147 40 SEEDGISIIKHAFSKGITFF-DTADKYGPYTNEILLGKALKELPRENIQVATKFGFVEL--GFTSVIVKGTPEYVRSCCE 116 (345)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~-DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~--~~~~~~~~~s~~~i~~~ve 116 (345)
+.+.=.+=++.|++.|-..+ |-+ ..| .-..+.+.+-+ ...+-|-| +..... .......+.+++.+.+.||
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLS-tGg---dl~~iR~~il~--~s~vpvGT-VPiYqa~~~~~~~~~~mt~d~~~~~ie 147 (423)
T TIGR00190 75 DIEEEVEKALIAIKYGADTVMDLS-TGG---DLDEIRKAILD--AVPVPVGT-VPIYQAAEKVHGAVEDMDEDDMFRAIE 147 (423)
T ss_pred CHHHHHHHHHHHHHcCCCeEeecc-CCC---CHHHHHHHHHH--cCCCCccC-ccHHHHHHHhcCChhhCCHHHHHHHHH
Confidence 33333344799999997744 444 334 23333333321 11222221 111000 0001234678888988888
Q ss_pred HHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhhcCCCceeccccCccccccccc
Q 019147 117 ASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDIENE 196 (345)
Q Consensus 117 ~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~ 196 (345)
+..+ |=+|++-+|.-- +.+.++.++++|+ ..|+-+-...-+...+... -.=|++...+ +.
T Consensus 148 ~qa~----dGVDfmTiH~Gi-------~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~~------~~ENPlye~f-D~ 207 (423)
T TIGR00190 148 KQAK----DGVDFMTIHAGV-------LLEYVERLKRSGR--ITGIVSRGGAILAAWMLHH------HKENPLYKNF-DY 207 (423)
T ss_pred HHHH----hCCCEEEEccch-------hHHHHHHHHhCCC--ccCeecCcHHHHHHHHHHc------CCcCchHHHH-HH
Confidence 8876 458888899652 4778889999985 5677665554444433222 1335666544 58
Q ss_pred chhHHHHhCCeEEeecCCCCcccCC
Q 019147 197 IVPLCRELGIGIVPYCPLGRGFFGG 221 (345)
Q Consensus 197 ~~~~~~~~gi~v~a~spl~~G~L~g 221 (345)
+++.|++++|.+. |+.|+=.|
T Consensus 208 lLeI~~~yDVtlS----LGDglRPG 228 (423)
T TIGR00190 208 ILEIAKEYDVTLS----LGDGLRPG 228 (423)
T ss_pred HHHHHHHhCeeee----ccCCcCCC
Confidence 9999999999984 56665444
No 67
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=55.00 E-value=1.8e+02 Score=27.11 Aligned_cols=109 Identities=16% Similarity=0.080 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHhhcCCCceeEEEeecCCCCC-CHHHHHHHHHHHHHcCCcceEecCC---------CcHHHHHHHhhc
Q 019147 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSV-PIEETIGEMKKLVEEGKIKYIGLSE---------ASPDTIRRAHAV 176 (345)
Q Consensus 107 s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~-~~~~~~~~l~~l~~~G~ir~iGvS~---------~~~~~l~~~~~~ 176 (345)
+.+.+.+.++..-+..+ |.-+.|-.-++.. +...+.+.++.+++.|.|+.|.+.+ .+.+.++.+.+.
T Consensus 120 ~~~e~~~~i~~i~~~~~---I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~ 196 (321)
T TIGR03822 120 SPAELDAAFAYIADHPE---IWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTS 196 (321)
T ss_pred CHHHHHHHHHHHHhCCC---ccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHc
Confidence 34455555443333323 3334454444432 2456777788888888876555433 334444444443
Q ss_pred CCCceeccccCcccc--cccccchhHHHHhCCeEEeecCCCCcc
Q 019147 177 HPITAVQLEWSLWAR--DIENEIVPLCRELGIGIVPYCPLGRGF 218 (345)
Q Consensus 177 ~~~~~~q~~~n~~~~--~~~~~~~~~~~~~gi~v~a~spl~~G~ 218 (345)
.....+-+..|-... ..-...++.+++.||.+...+++..|.
T Consensus 197 g~~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 197 GKTVYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred CCcEEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC
Confidence 322233444432110 011466778889999999988888764
No 68
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=54.95 E-value=1.7e+02 Score=26.64 Aligned_cols=108 Identities=9% Similarity=-0.035 Sum_probs=62.5
Q ss_pred ccccccccCcCCCCCCCCHHHHHHHHHHHHHCCCCeeecC-CCCCCCcHHHHHHHHHhcCCCCCeEEEeeccccccCccc
Q 019147 23 KLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTA-DKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTS 101 (345)
Q Consensus 23 ~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA-~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~ 101 (345)
.||+++|+...+-|.-.++....+-.-..+...+|.+.-- ..|.. -+++.+-+|.++ ..+++..+.|+.....
T Consensus 4 ~IG~sGW~~~~w~~~~yp~~~~~~~~L~~y~~~f~~VEiN~TFYa~-p~~~t~~~W~~~-~p~~FrFsvK~~~~iT---- 77 (263)
T COG1801 4 YIGTSGWSYPDWEGLFYPEGLKKKEFLAYYASHFNTVEINSTFYAP-PSPETVLRWAEE-TPDDFRFSVKAPRAIT---- 77 (263)
T ss_pred EEeecCCCcccccccccCcccchhhHHHHHhccCCEEEECCcccCC-CCHHHHHHHHHh-CCCCeEEEEEeccccc----
Confidence 4677777765422221122222222344555667777643 34543 267777788875 8999999999975331
Q ss_pred cccCCCH---HHHHHHHHHHHhhcCCCceeEEEeecCCCC
Q 019147 102 VIVKGTP---EYVRSCCEASLRRLDVEYIDLYYQHRVDTS 138 (345)
Q Consensus 102 ~~~~~s~---~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~ 138 (345)
+..-.. ..+.+.+.+-++.|| +.+..+++.-|..-
T Consensus 78 -H~~~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Ppsf 115 (263)
T COG1801 78 -HQRRLKECDFELWEFFLEPLAPLG-ERLGPILFQLPPSF 115 (263)
T ss_pred -chhhhccchHHHHHHHHHHHHhhh-cccceEEEecCCcc
Confidence 111122 344444555555677 58999999888653
No 69
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=54.41 E-value=72 Score=30.82 Aligned_cols=60 Identities=20% Similarity=0.127 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHhhcCCCceeEEEeec-CCCC-----------CC-HHH---HH-HHHHHHHHcCCcceEecCCCcH
Q 019147 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHR-VDTS-----------VP-IEE---TI-GEMKKLVEEGKIKYIGLSEASP 167 (345)
Q Consensus 106 ~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~-~~~~-----------~~-~~~---~~-~~l~~l~~~G~ir~iGvS~~~~ 167 (345)
-+.+.+++.++..+ +|+.++|.+|.+.- |... .+ .++ .+ .+.+.|.+.|-. .+++|||..
T Consensus 179 qt~e~~~~tl~~~~-~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeisnfa~ 255 (400)
T PRK07379 179 QTLEDWQASLEAAI-ALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYE-HYEISNYAK 255 (400)
T ss_pred CCHHHHHHHHHHHH-cCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-eeeeeheEC
Confidence 46777777777655 48889999887752 2110 01 111 22 245667777875 478888864
No 70
>PRK05660 HemN family oxidoreductase; Provisional
Probab=53.92 E-value=84 Score=30.10 Aligned_cols=61 Identities=11% Similarity=0.014 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHhhcCCCceeEEEee-cCCCC-------C-CHHHHHH----HHHHHHHcCCcceEecCCCcHH
Q 019147 106 GTPEYVRSCCEASLRRLDVEYIDLYYQH-RVDTS-------V-PIEETIG----EMKKLVEEGKIKYIGLSEASPD 168 (345)
Q Consensus 106 ~s~~~i~~~ve~SL~~Lg~d~iDl~~lH-~~~~~-------~-~~~~~~~----~l~~l~~~G~ir~iGvS~~~~~ 168 (345)
.+.+.+.+.++..++ |+.++|.+|.+- .|... . ..++.++ +.+.|.+.|-. .+++|||...
T Consensus 171 qt~~~~~~~l~~~~~-l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yei~~fa~~ 244 (378)
T PRK05660 171 QSLEEALDDLRQAIA-LNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGYQ-QYETSAYAKP 244 (378)
T ss_pred CCHHHHHHHHHHHHh-cCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCCc-EeecccccCC
Confidence 467888887777655 899999998774 23210 1 1122233 34466677864 4788888753
No 71
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=53.68 E-value=2.2e+02 Score=27.75 Aligned_cols=109 Identities=14% Similarity=0.133 Sum_probs=57.9
Q ss_pred CCCCCCCcHHHHHHHHHhc----CCCCCeEEEeeccccccCccccccCCCHHHHHHHHHHHHhhcCC-CceeEEEeecCC
Q 019147 62 ADKYGPYTNEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDV-EYIDLYYQHRVD 136 (345)
Q Consensus 62 A~~Yg~G~sE~~lG~al~~----~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~Lg~-d~iDl~~lH~~~ 136 (345)
.-.|| .|+-|-++|++ .+.+-++|.|-+.... --+.+...+++.-++... ..+.++.++.|.
T Consensus 64 d~V~G---g~~~L~~ai~~~~~~~~p~~I~v~ttC~~~i----------iGdDi~~v~~~~~~~~~~~~~~~vi~v~tpg 130 (435)
T cd01974 64 AAVFG---GQNNLIDGLKNAYAVYKPDMIAVSTTCMAEV----------IGDDLNAFIKNAKNKGSIPADFPVPFANTPS 130 (435)
T ss_pred ceEEC---cHHHHHHHHHHHHHhcCCCEEEEeCCchHhh----------hhccHHHHHHHHHHhccCCCCCeEEEecCCC
Confidence 34677 56777788776 3444567777664321 122333333333233311 147899999887
Q ss_pred CCCCH----HHHHHHHH-HHHH-------cCCcceEe-cCCC-c-HHHHHHHhhcCCCceec
Q 019147 137 TSVPI----EETIGEMK-KLVE-------EGKIKYIG-LSEA-S-PDTIRRAHAVHPITAVQ 183 (345)
Q Consensus 137 ~~~~~----~~~~~~l~-~l~~-------~G~ir~iG-vS~~-~-~~~l~~~~~~~~~~~~q 183 (345)
..... +.++++|- .+.. .++|--|| ..+. . .+.++++++...+.++.
T Consensus 131 f~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~~ 192 (435)
T cd01974 131 FVGSHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYTI 192 (435)
T ss_pred CccCHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEEE
Confidence 65332 23444433 2322 33455565 2222 2 56788888877666654
No 72
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=53.55 E-value=1.7e+02 Score=26.37 Aligned_cols=99 Identities=17% Similarity=0.146 Sum_probs=62.6
Q ss_pred CCHHHHHHHHHHHHhhcCCCceeEE-EeecCCCC-CCHH-H---HHHHHHHHHHc-CCcceEecCCCcHHHHHHHhhcCC
Q 019147 106 GTPEYVRSCCEASLRRLDVEYIDLY-YQHRVDTS-VPIE-E---TIGEMKKLVEE-GKIKYIGLSEASPDTIRRAHAVHP 178 (345)
Q Consensus 106 ~s~~~i~~~ve~SL~~Lg~d~iDl~-~lH~~~~~-~~~~-~---~~~~l~~l~~~-G~ir~iGvS~~~~~~l~~~~~~~~ 178 (345)
.+++.+.+.+++.+ .-|.++||+= .--+|+.. .+.+ | +...++.+++. +. -+.+-+++++.++++++.+.
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G~ 96 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAEVARAALEAGA 96 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcCC
Confidence 45666666665554 5688999993 11234322 1222 2 55566666665 43 38888999999999998743
Q ss_pred CceeccccCcccccccccchhHHHHhCCeEEeec
Q 019147 179 ITAVQLEWSLWARDIENEIVPLCRELGIGIVPYC 212 (345)
Q Consensus 179 ~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~s 212 (345)
.-++-+ +... ..++++.++++|..++.+.
T Consensus 97 ~iINsi--s~~~---~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 97 DIINDV--SGGQ---DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred CEEEEC--CCCC---CchhHHHHHHcCCcEEEEe
Confidence 323222 2222 2579999999999999853
No 73
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=53.23 E-value=88 Score=29.84 Aligned_cols=61 Identities=18% Similarity=0.164 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCceeEEEeec-CCCC-----------CCH-H---HH-HHHHHHHHHcCCcceEecCCCcH
Q 019147 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHR-VDTS-----------VPI-E---ET-IGEMKKLVEEGKIKYIGLSEASP 167 (345)
Q Consensus 105 ~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~-~~~~-----------~~~-~---~~-~~~l~~l~~~G~ir~iGvS~~~~ 167 (345)
.-+.+.+.+.++..++ |+.++|.+|.+.- |... .+. + +. ..+.+.|.+.|-.+ +++|||..
T Consensus 166 gqt~~~~~~~l~~~~~-l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~-yeis~fa~ 243 (370)
T PRK06294 166 TQSLSDFIVDLHQAIT-LPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGFTR-YELASYAK 243 (370)
T ss_pred CCCHHHHHHHHHHHHc-cCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCCe-eeeeeeeC
Confidence 3468888888887664 8999999998863 3210 011 1 11 22455667777644 78888764
No 74
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=53.15 E-value=27 Score=32.16 Aligned_cols=102 Identities=12% Similarity=0.062 Sum_probs=59.9
Q ss_pred CCHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhhcCCCceeccc
Q 019147 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLE 185 (345)
Q Consensus 106 ~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~ 185 (345)
++.+.. ..+-+.|.++|+++|.+-.+++|...-...+.++.+..+.+...++...+. .+...++.+++.. ++.+.+.
T Consensus 23 ~s~e~k-~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g-~~~v~i~ 99 (287)
T PRK05692 23 IPTADK-IALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAG-ADEVAVF 99 (287)
T ss_pred cCHHHH-HHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcC-CCEEEEE
Confidence 455544 446677999999999997665554221122335556665544445655554 4677788877652 2333332
Q ss_pred cCc--c------cccc------cccchhHHHHhCCeEEe
Q 019147 186 WSL--W------ARDI------ENEIVPLCRELGIGIVP 210 (345)
Q Consensus 186 ~n~--~------~~~~------~~~~~~~~~~~gi~v~a 210 (345)
++. . .... -.+.+++++++|+.+.+
T Consensus 100 ~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 100 ASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 222 1 1111 14689999999998863
No 75
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=53.04 E-value=52 Score=31.26 Aligned_cols=73 Identities=10% Similarity=0.089 Sum_probs=50.7
Q ss_pred HHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhhcCCCceeccccCccccc-ccccchhHHHHhCCeEEeecCCCC
Q 019147 144 TIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARD-IENEIVPLCRELGIGIVPYCPLGR 216 (345)
Q Consensus 144 ~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~v~a~spl~~ 216 (345)
-++.+.+|+++..|. +.|=|-++...+..+++...++++|+....+-.- .-.++..+|+++|+.++..+-+..
T Consensus 227 ~~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~s 301 (365)
T cd03318 227 NLDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLES 301 (365)
T ss_pred cHHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcchh
Confidence 366777787776655 5566667888888888877788888865543211 125788999999999886544433
No 76
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=52.66 E-value=1.9e+02 Score=26.72 Aligned_cols=104 Identities=15% Similarity=0.123 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCCC-cHHHHHHHhhcCCCceeccc
Q 019147 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHAVHPITAVQLE 185 (345)
Q Consensus 107 s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~~ 185 (345)
+++.+++.++..++ .+-+.+--+-++......+.+.....++..++.|+--.+=++.. +...+..++.....+.+---
T Consensus 138 ~~~~~~~~~~~~~~-~~~~~vvg~~l~~~e~~~~~~~~~~~~~~A~~~g~~i~~Ha~E~~~~~~~~~~~~~~g~~ri~Hg 216 (324)
T TIGR01430 138 QPEAAEETLELAKP-YKEQTIVGFGLAGDERGGPPPDFVRAFAIARELGLHLTVHAGELGGPESVREALDDLGATRIGHG 216 (324)
T ss_pred CHHHHHHHHHHHHh-hccCcEEEecCCCCCCCCCHHHHHHHHHHHHHCCCCeEEecCCCCChHHHHHHHHHcCchhcchh
Confidence 46777777777665 32222322334443333445667777888888887555544433 23344444432222211111
Q ss_pred cCcccccccccchhHHHHhCCeEEeecCCC
Q 019147 186 WSLWARDIENEIVPLCRELGIGIVPYCPLG 215 (345)
Q Consensus 186 ~n~~~~~~~~~~~~~~~~~gi~v~a~spl~ 215 (345)
+++ .. ..+.++..+++||.+.. .|..
T Consensus 217 ~~l-~~--~~~~i~~l~~~gi~v~~-cP~S 242 (324)
T TIGR01430 217 VRA-LE--DPELLKRLAQENITLEV-CPTS 242 (324)
T ss_pred hhh-cc--CHHHHHHHHHcCceEEE-CCcc
Confidence 111 11 14689999999998753 3443
No 77
>PRK05414 urocanate hydratase; Provisional
Probab=52.50 E-value=39 Score=33.48 Aligned_cols=115 Identities=17% Similarity=0.181 Sum_probs=78.3
Q ss_pred HHHHHHCCCCeee--cCCCCC--------CCcHHHHHHHHHhc---CCCCCeEEEeeccccccCcc---------ccccC
Q 019147 48 IKHAFSKGITFFD--TADKYG--------PYTNEILLGKALKE---LPRENIQVATKFGFVELGFT---------SVIVK 105 (345)
Q Consensus 48 l~~A~~~Gin~~D--TA~~Yg--------~G~sE~~lG~al~~---~~R~~~~I~tK~~~~~~~~~---------~~~~~ 105 (345)
....-+.|+..+- ||-.|- .|.-|.++..+=+. ..+-++||++-+|......+ ....+
T Consensus 118 f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~g~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vE 197 (556)
T PRK05414 118 FNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFGGDLAGRLVLTAGLGGMGGAQPLAATMAGAVCLAVE 197 (556)
T ss_pred HHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcCCCCceeEEEEecCCccccccHHHHHhcCceEEEEE
Confidence 4556677876543 444431 25666666544333 25778999988886654311 01122
Q ss_pred CCHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhhc
Q 019147 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV 176 (345)
Q Consensus 106 ~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~ 176 (345)
.+++.| -+|+.+.|+|.+ ..+++++++..++.+++|+..+||+-..-++.+.++++.
T Consensus 198 vd~~ri-------~kR~~~gyld~~-------~~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~ 254 (556)
T PRK05414 198 VDESRI-------DKRLRTGYLDEK-------ADDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRR 254 (556)
T ss_pred ECHHHH-------HHHHhCCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHc
Confidence 344444 458888999863 246899999999999999999999999999999998876
No 78
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=52.31 E-value=39 Score=33.34 Aligned_cols=125 Identities=18% Similarity=0.184 Sum_probs=82.1
Q ss_pred HHHHHHCCCCeee--cCCCCC--------CCcHHHHHHHHHhc---CCCCCeEEEeeccccccCcc---------ccccC
Q 019147 48 IKHAFSKGITFFD--TADKYG--------PYTNEILLGKALKE---LPRENIQVATKFGFVELGFT---------SVIVK 105 (345)
Q Consensus 48 l~~A~~~Gin~~D--TA~~Yg--------~G~sE~~lG~al~~---~~R~~~~I~tK~~~~~~~~~---------~~~~~ 105 (345)
....-+.|+..+- ||-.|- .|.-|.++..+=+. ..+-++||++-+|......+ ....+
T Consensus 109 f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vE 188 (545)
T TIGR01228 109 FHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGSLKGKWVLTAGLGGMGGAQPLAVTMNGGVSIAVE 188 (545)
T ss_pred HHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCCCceeEEEEeCCCccccccHHHHHHcCceEEEEE
Confidence 5556677877543 444331 25666665544332 24778888888886654311 01122
Q ss_pred CCHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhhc---CCCcee
Q 019147 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV---HPITAV 182 (345)
Q Consensus 106 ~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~---~~~~~~ 182 (345)
.+++.| -+|+.+.|+|.+ ..+++++++..++.+++|+..+||+-..-++.+.++++. +.+..-
T Consensus 189 vd~~ri-------~kR~~~gyld~~-------~~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~pDlvtD 254 (545)
T TIGR01228 189 VDESRI-------DKRLETKYCDEQ-------TDSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVVPDVVTD 254 (545)
T ss_pred ECHHHH-------HHHHhcCcceeE-------cCCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCCCCCcCC
Confidence 344444 457888998863 246899999999999999999999999999999998876 233344
Q ss_pred cccc
Q 019147 183 QLEW 186 (345)
Q Consensus 183 q~~~ 186 (345)
|...
T Consensus 255 QTSa 258 (545)
T TIGR01228 255 QTSA 258 (545)
T ss_pred CCcc
Confidence 5543
No 79
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=52.06 E-value=1.1e+02 Score=29.72 Aligned_cols=60 Identities=20% Similarity=0.212 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHHhhcCCCceeEEEe-ecCCCC----------CCH-H---HHHHH-HHHHHHcCCcceEecCCCcH
Q 019147 106 GTPEYVRSCCEASLRRLDVEYIDLYYQ-HRVDTS----------VPI-E---ETIGE-MKKLVEEGKIKYIGLSEASP 167 (345)
Q Consensus 106 ~s~~~i~~~ve~SL~~Lg~d~iDl~~l-H~~~~~----------~~~-~---~~~~~-l~~l~~~G~ir~iGvS~~~~ 167 (345)
-+.+.+.+.++..++ |+.|+|.+|.+ |-|... .+- + +.++. .+.|.+.|- +.+|+|||.-
T Consensus 201 QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~yeisnfa~ 276 (416)
T COG0635 201 QTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYEISNFAK 276 (416)
T ss_pred CCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEeechhcC
Confidence 356667777766654 67999999977 433110 111 1 34444 445667777 8999999986
No 80
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=51.98 E-value=1e+02 Score=27.01 Aligned_cols=120 Identities=15% Similarity=0.221 Sum_probs=69.0
Q ss_pred CCHHHHHHHHHHHHHCCCCeeecC-CCCCCCcHHHHHHHHHhcCCCCCeEEEeeccccccCccccccCCCHHHHHHHHHH
Q 019147 39 LSEEDGISIIKHAFSKGITFFDTA-DKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEA 117 (345)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA-~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~ 117 (345)
.+.++..++++...+.||..|+.. +..+. ...+.+.+..+......+...+. ...+.++.+++.
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~--------------~~~~~i~~~~~~ 75 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASE-DDFEQVRRLREALPNARLQALCR--------------ANEEDIERAVEA 75 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSH-HHHHHHHHHHHHHHSSEEEEEEE--------------SCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCH-HHHHHhhhhhhhhcccccceeee--------------ehHHHHHHHHHh
Confidence 467889999999999999999999 43332 12333444433322322222222 235667776764
Q ss_pred HHhhcCCCceeEEEeecCC-----CCCC----HHHHHHHHHHHHHcCCcceEecCC---CcHHHHHHHh
Q 019147 118 SLRRLDVEYIDLYYQHRVD-----TSVP----IEETIGEMKKLVEEGKIKYIGLSE---ASPDTIRRAH 174 (345)
Q Consensus 118 SL~~Lg~d~iDl~~lH~~~-----~~~~----~~~~~~~l~~l~~~G~ir~iGvS~---~~~~~l~~~~ 174 (345)
. ...|.+.+.++.-=++. .... ++.+.+.++..++.|.-..+++-. ++++.+.++.
T Consensus 76 ~-~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~ 143 (237)
T PF00682_consen 76 A-KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELA 143 (237)
T ss_dssp H-HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHH
T ss_pred h-HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHH
Confidence 4 56788877765432220 0111 344566777778888888888744 4555554443
No 81
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=51.26 E-value=1.3e+02 Score=27.04 Aligned_cols=90 Identities=18% Similarity=0.156 Sum_probs=52.1
Q ss_pred HHHHhhcCCCceeEEEeecCCCCCCHHH-HHHHHHHHHHcCCcceEecCC-CcHHHHHHHhhcCCCceeccccCcccccc
Q 019147 116 EASLRRLDVEYIDLYYQHRVDTSVPIEE-TIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQLEWSLWARDI 193 (345)
Q Consensus 116 e~SL~~Lg~d~iDl~~lH~~~~~~~~~~-~~~~l~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~n~~~~~~ 193 (345)
-+-|+.+| +|.+.+|..+....... -++.+.++++.-.+.-|..-. .+.+.+.++++....+.+.+---+.....
T Consensus 161 ~~~l~~~G---~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~ 237 (254)
T TIGR00735 161 AKEVEKLG---AGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREI 237 (254)
T ss_pred HHHHHHcC---CCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCC
Confidence 34455666 56666676544321111 255566666665566665554 56788888888766666554222222211
Q ss_pred -cccchhHHHHhCCeE
Q 019147 194 -ENEIVPLCRELGIGI 208 (345)
Q Consensus 194 -~~~~~~~~~~~gi~v 208 (345)
..++.+.|+++||.+
T Consensus 238 ~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 238 TIGEVKEYLAERGIPV 253 (254)
T ss_pred CHHHHHHHHHHCCCcc
Confidence 257889999999864
No 82
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=51.05 E-value=89 Score=30.23 Aligned_cols=83 Identities=8% Similarity=-0.007 Sum_probs=58.5
Q ss_pred eEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhhcCCCceeccccCccccc-ccccchhHHHHhC
Q 019147 128 DLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARD-IENEIVPLCRELG 205 (345)
Q Consensus 128 Dl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~g 205 (345)
++.++--|-.. +-++.+.+|++.-.|. +.|=|.++...+..+++..-++++|+...-.-.- .-.++.+.|+.+|
T Consensus 233 ~l~~iEeP~~~----~d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~g 308 (404)
T PRK15072 233 RLFWLEDPTPA----ENQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALYQ 308 (404)
T ss_pred CCcEEECCCCc----cCHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHcC
Confidence 44455544322 2367788888876666 6677778999999999888889999876653211 1257899999999
Q ss_pred CeEEeecCC
Q 019147 206 IGIVPYCPL 214 (345)
Q Consensus 206 i~v~a~spl 214 (345)
+.++.++..
T Consensus 309 i~~~~h~~~ 317 (404)
T PRK15072 309 VRTGSHGPT 317 (404)
T ss_pred CceeeccCc
Confidence 999876543
No 83
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=50.88 E-value=27 Score=30.71 Aligned_cols=100 Identities=15% Similarity=0.217 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHHcCCcceEec----CCCcHHHHHHHhhcCCCceeccccCcccccccccchhHHHHhCCeEEeecCCC
Q 019147 140 PIEETIGEMKKLVEEGKIKYIGL----SEASPDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLG 215 (345)
Q Consensus 140 ~~~~~~~~l~~l~~~G~ir~iGv----S~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~ 215 (345)
..+++.++|..|+ +..|.. |.+....++.+++...+.+ |.|+-+....+++...-+.|..++.-++-+
T Consensus 74 eve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~~----~~PLWg~d~~ell~e~~~~Gf~~~Iv~Vsa 145 (223)
T COG2102 74 EVEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLKV----YAPLWGRDPEELLEEMVEAGFEAIIVAVSA 145 (223)
T ss_pred hHHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCEE----eecccCCCHHHHHHHHHHcCCeEEEEEEec
Confidence 4566777777776 444544 3455566777776655443 334433333688888888888888777777
Q ss_pred CcccCCCCccCCCCCccccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHH
Q 019147 216 RGFFGGKAVVESVPLDSFLKFFPRFNGENLDRNKSIYFRIENLAKKYKCTSA 267 (345)
Q Consensus 216 ~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~ 267 (345)
.|+-.. +-+..+ ..+.++.+..++++||+.|+
T Consensus 146 ~gL~~~------------------~lGr~i--~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 146 EGLDES------------------WLGRRI--DREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred cCCChH------------------HhCCcc--CHHHHHHHHHHHHhcCCCcc
Confidence 775210 000001 12456789999999998764
No 84
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=50.61 E-value=22 Score=24.41 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Q 019147 254 RIENLAKKYKCTSAQLALAWVLA 276 (345)
Q Consensus 254 ~l~~la~~~g~s~~q~al~~~l~ 276 (345)
.+.+||+++|+++.++|..|+.-
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~V 37 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAEV 37 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHH
Confidence 46789999999999999999863
No 85
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=50.56 E-value=1.9e+02 Score=27.29 Aligned_cols=135 Identities=19% Similarity=0.221 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHHHHCC-CCeeecCCCCCCCcHHHHHHHHHhcCC-CCCeEEEeeccccccCccccccCCCHHHHHHHHH
Q 019147 39 LSEEDGISIIKHAFSKG-ITFFDTADKYGPYTNEILLGKALKELP-RENIQVATKFGFVELGFTSVIVKGTPEYVRSCCE 116 (345)
Q Consensus 39 ~~~~~~~~~l~~A~~~G-in~~DTA~~Yg~G~sE~~lG~al~~~~-R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve 116 (345)
++.++..+.-+.|.+.| .+|...|..++.|+.=..+-++++.+. --.+-+.--+| ..+.+..
T Consensus 84 ~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c~slG-----------~l~~eq~----- 147 (335)
T COG0502 84 MEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELGLEVCASLG-----------MLTEEQA----- 147 (335)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcCcHHhhccC-----------CCCHHHH-----
Confidence 46677777778888999 889998888874444444445554411 11122222222 1233333
Q ss_pred HHHhhcCCCceeEEEeecCCC----------CCCHHHHHHHHHHHHHcCCcce----EecCCCcHHHHHHHhhcCCCc-e
Q 019147 117 ASLRRLDVEYIDLYYQHRVDT----------SVPIEETIGEMKKLVEEGKIKY----IGLSEASPDTIRRAHAVHPIT-A 181 (345)
Q Consensus 117 ~SL~~Lg~d~iDl~~lH~~~~----------~~~~~~~~~~l~~l~~~G~ir~----iGvS~~~~~~l~~~~~~~~~~-~ 181 (345)
+-|+.-|+|+. -|+.+. ...+++-++.++.+++.|.=-. +|+-....+.+..+....... .
T Consensus 148 ~~L~~aGvd~y----nhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~p 223 (335)
T COG0502 148 EKLADAGVDRY----NHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTP 223 (335)
T ss_pred HHHHHcChhhe----ecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCCC
Confidence 44777787764 465543 2357888999999999987433 455555555555554443332 5
Q ss_pred eccccCcccccc
Q 019147 182 VQLEWSLWARDI 193 (345)
Q Consensus 182 ~q~~~n~~~~~~ 193 (345)
-.+++|.+.+.+
T Consensus 224 dsVPIn~l~P~~ 235 (335)
T COG0502 224 DSVPINFLNPIP 235 (335)
T ss_pred CeeeeeeecCCC
Confidence 667888888753
No 86
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=50.13 E-value=1.2e+02 Score=27.19 Aligned_cols=105 Identities=17% Similarity=0.183 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCceeEEEeecCCC-----CCCHHHHHHHHHHHHHc-CCcceEecC---CCcHHHHHHHhh
Q 019147 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDT-----SVPIEETIGEMKKLVEE-GKIKYIGLS---EASPDTIRRAHA 175 (345)
Q Consensus 105 ~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~-----~~~~~~~~~~l~~l~~~-G~ir~iGvS---~~~~~~l~~~~~ 175 (345)
.++.+...+ +-+.|.++|+++|.+-+...... ..+....++.++.+++. ...+...++ ....+.++.+.+
T Consensus 18 ~~~~~~k~~-i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 96 (263)
T cd07943 18 QFTLEQVRA-IARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAAD 96 (263)
T ss_pred ecCHHHHHH-HHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHH
Confidence 355555544 55569999999999975432110 00112245566666443 346655554 234566766665
Q ss_pred cCCCceeccccCcccccccccchhHHHHhCCeEEee
Q 019147 176 VHPITAVQLEWSLWARDIENEIVPLCRELGIGIVPY 211 (345)
Q Consensus 176 ~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~ 211 (345)
. .++.+.+.++.-+...-.+.+++++++|+.+...
T Consensus 97 ~-g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 97 L-GVDVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred c-CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 3 4566655443322222257889999999877653
No 87
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=49.77 E-value=1.2e+02 Score=26.50 Aligned_cols=72 Identities=18% Similarity=0.214 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHHCCCCeeecCCCCC-CCcHH---HHHHHHHhcCCCCCeEEEeeccccccCccccccCCCHHHHHHHH
Q 019147 40 SEEDGISIIKHAFSKGITFFDTADKYG-PYTNE---ILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCC 115 (345)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg-~G~sE---~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~v 115 (345)
+.++...+.+.+.+.|..|+=|+..|+ .|.+. +.+.++++ ++ +-.|.... .+ +.+...+-+
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~----~~--v~IKaaGG--------ir-t~~~a~~~i 194 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVG----DT--IGVKASGG--------VR-TAEDAIAMI 194 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhc----cC--CeEEEeCC--------CC-CHHHHHHHH
Confidence 557788999999999999999999997 34322 33334433 22 33343211 12 578888889
Q ss_pred HHHHhhcCCCc
Q 019147 116 EASLRRLDVEY 126 (345)
Q Consensus 116 e~SL~~Lg~d~ 126 (345)
+.--.|+|+++
T Consensus 195 ~aGa~riGts~ 205 (211)
T TIGR00126 195 EAGASRIGASA 205 (211)
T ss_pred HHhhHHhCcch
Confidence 99999999875
No 88
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=49.30 E-value=59 Score=30.92 Aligned_cols=73 Identities=11% Similarity=0.039 Sum_probs=52.5
Q ss_pred HHHHHHHHHcCCcc-eEecCCCcHHHHHHHhhcCCCceeccccCccccc-ccccchhHHHHhCCeEEeecCCCCc
Q 019147 145 IGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARD-IENEIVPLCRELGIGIVPYCPLGRG 217 (345)
Q Consensus 145 ~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~v~a~spl~~G 217 (345)
++.+.+|++...+. +.|=|-++..++..++.....+++|+...-+-.- .-.++...|+.+|+.++..+.+.++
T Consensus 227 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~ 301 (368)
T TIGR02534 227 REALARLTRRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGP 301 (368)
T ss_pred HHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhH
Confidence 66777787776655 6677788888888888887788888866653211 1157888999999998876555444
No 89
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=48.86 E-value=1.3e+02 Score=28.83 Aligned_cols=84 Identities=18% Similarity=0.054 Sum_probs=56.2
Q ss_pred EEeecCCCCCCHHHHHHHHHHHHHc------CCcceEecCCCcHHHHHHHhhcCCCceeccccCcccccc-cccchhHHH
Q 019147 130 YYQHRVDTSVPIEETIGEMKKLVEE------GKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDI-ENEIVPLCR 202 (345)
Q Consensus 130 ~~lH~~~~~~~~~~~~~~l~~l~~~------G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~-~~~~~~~~~ 202 (345)
+++-.|-+..+.++-++.+.+|++. +.=-..|=|.++.+.+..+++..-.+++|+..+-.-.-. -.++.++|+
T Consensus 230 ~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA~ 309 (369)
T cd03314 230 LRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYCK 309 (369)
T ss_pred EEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHHH
Confidence 4555554332222346667777665 333345667788999999988888899998877532111 258899999
Q ss_pred HhCCeEEeecC
Q 019147 203 ELGIGIVPYCP 213 (345)
Q Consensus 203 ~~gi~v~a~sp 213 (345)
.+||.++..+.
T Consensus 310 a~Gi~~~~h~~ 320 (369)
T cd03314 310 EHGVGAYLGGS 320 (369)
T ss_pred HcCCcEEEeCC
Confidence 99999998654
No 90
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=48.45 E-value=42 Score=24.38 Aligned_cols=29 Identities=14% Similarity=0.165 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 019147 246 DRNKSIYFRIENLAKKYKCTSAQLALAWV 274 (345)
Q Consensus 246 ~~~~~~~~~l~~la~~~g~s~~q~al~~~ 274 (345)
+...+.+.+|.++|++.|++.+++|.-.+
T Consensus 48 ~~V~~sl~kL~~La~~N~v~feeLc~YAL 76 (82)
T PF11020_consen 48 EKVMDSLSKLYKLAKENNVSFEELCVYAL 76 (82)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 57788899999999999999999986443
No 91
>PRK06424 transcription factor; Provisional
Probab=48.31 E-value=46 Score=27.26 Aligned_cols=82 Identities=12% Similarity=0.032 Sum_probs=41.7
Q ss_pred cccchhHHHHhCCeEEee---cCCCC--cccCCCCc--cCCCCCccccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCH
Q 019147 194 ENEIVPLCRELGIGIVPY---CPLGR--GFFGGKAV--VESVPLDSFLKFFPRFNGENLDRNKSIYFRIENLAKKYKCTS 266 (345)
Q Consensus 194 ~~~~~~~~~~~gi~v~a~---spl~~--G~L~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~ 266 (345)
+-.+-+.|.+.|..|..+ +|... -..+.... .........+.. ..+.....+......+.|+.+-++.|+|.
T Consensus 22 ~l~vC~~Ca~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~g~~Ir~lRe~~GLSQ 100 (144)
T PRK06424 22 ILNVCDDCAKFGTPVIEHNKFKEVKEDIKVKLPEKKIIVPTYKKAYKKYK-KKASDEDLDIVEDYAELVKNARERLSMSQ 100 (144)
T ss_pred eeehhHHHHHcCCcccccCCCCcccccccccCccccccccccccCCCCcc-CcccHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 356788899999999998 56543 11110000 000000000000 01111112223445567788888899999
Q ss_pred HHHHHHHHHh
Q 019147 267 AQLALAWVLA 276 (345)
Q Consensus 267 ~q~al~~~l~ 276 (345)
.++|-+--++
T Consensus 101 ~eLA~~iGvs 110 (144)
T PRK06424 101 ADLAAKIFER 110 (144)
T ss_pred HHHHHHhCCC
Confidence 9988654433
No 92
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=48.30 E-value=1.7e+02 Score=27.03 Aligned_cols=95 Identities=15% Similarity=0.258 Sum_probs=64.9
Q ss_pred HHHhhcCCCceeEEEeecCCC-----CCCHHHHHHHHHHHHHcCCcce-EecCCC---cHHHHHHHhhcCCC-ceecccc
Q 019147 117 ASLRRLDVEYIDLYYQHRVDT-----SVPIEETIGEMKKLVEEGKIKY-IGLSEA---SPDTIRRAHAVHPI-TAVQLEW 186 (345)
Q Consensus 117 ~SL~~Lg~d~iDl~~lH~~~~-----~~~~~~~~~~l~~l~~~G~ir~-iGvS~~---~~~~l~~~~~~~~~-~~~q~~~ 186 (345)
...++.| .|++-+|-... +.+.+++.+.|+++.+.=+|-. ||=|.. +++.++++.+...= .+.-...
T Consensus 158 k~Vk~fg---admvTiHlIsTdPki~D~p~~EAak~lEdvLqAVdvPiiiGGSGnpeKDpeVlekaAEvaEGeRclLaSa 234 (403)
T COG2069 158 KCVKKFG---ADMVTIHLISTDPKIKDTPAKEAAKTLEDVLQAVDVPIIIGGSGNPEKDPEVLEKAAEVAEGERCLLASA 234 (403)
T ss_pred HHHHHhC---CceEEEEeecCCccccCCCHHHHHHHHHHHHHhcCcCEEecCCCCCccCHHHHHHHHHhhcCceEEeecc
Confidence 3445666 67778886643 3567889999999988877653 566764 56788887776332 2322233
Q ss_pred CcccccccccchhHHHHhCCeEEeecCCCC
Q 019147 187 SLWARDIENEIVPLCRELGIGIVPYCPLGR 216 (345)
Q Consensus 187 n~~~~~~~~~~~~~~~~~gi~v~a~spl~~ 216 (345)
|+ +.+. ..+.+++.++|=.|++|+++.-
T Consensus 235 nl-dlDy-~~ia~AA~ky~H~VLswt~~D~ 262 (403)
T COG2069 235 NL-DLDY-ERIAEAALKYDHVVLSWTQMDV 262 (403)
T ss_pred cc-ccCH-HHHHHHHHhcCceEEEeeccCh
Confidence 32 3333 5789999999999999999863
No 93
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=48.25 E-value=24 Score=28.38 Aligned_cols=25 Identities=36% Similarity=0.622 Sum_probs=20.8
Q ss_pred ccccccchhHHHHhCCeEEeecCCC
Q 019147 191 RDIENEIVPLCRELGIGIVPYCPLG 215 (345)
Q Consensus 191 ~~~~~~~~~~~~~~gi~v~a~spl~ 215 (345)
++...++++.|++.||.|++|-.+.
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 3334789999999999999988775
No 94
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=48.24 E-value=2.3e+02 Score=26.39 Aligned_cols=135 Identities=12% Similarity=0.059 Sum_probs=77.9
Q ss_pred CHHHHHHHHHHHHHCCCCeeecC---C-------CCCCC--cHHHHHHHHHhcC-CCCCeEEEeeccccccCccccccCC
Q 019147 40 SEEDGISIIKHAFSKGITFFDTA---D-------KYGPY--TNEILLGKALKEL-PRENIQVATKFGFVELGFTSVIVKG 106 (345)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA---~-------~Yg~G--~sE~~lG~al~~~-~R~~~~I~tK~~~~~~~~~~~~~~~ 106 (345)
++++..+..+.+.+.|+..||.- + .+|.. ..-..+.+.++.. .--++-|+.|+...+. .
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~--------~ 146 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWA--------P 146 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEcccc--------C
Confidence 56777777777888999999942 1 22221 1233444444431 1113457777753221 1
Q ss_pred CHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCH--HHHHHHHHHHHHcCCcceEecCC-CcHHHHHHHhhcCCCceec
Q 019147 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPI--EETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQ 183 (345)
Q Consensus 107 s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~--~~~~~~l~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q 183 (345)
+..... .+-+-|+..| +|.+.+|.-...... ..-|+.+.++++.=.|--||... .+++.++++++....+.+|
T Consensus 147 ~~~~~~-~~a~~le~~G---~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVm 222 (321)
T PRK10415 147 EHRNCV-EIAQLAEDCG---IQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALM 222 (321)
T ss_pred CcchHH-HHHHHHHHhC---CCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEE
Confidence 111121 2334467777 466677865322111 12377778888776778787776 5788888888777788888
Q ss_pred ccc
Q 019147 184 LEW 186 (345)
Q Consensus 184 ~~~ 186 (345)
+-=
T Consensus 223 iGR 225 (321)
T PRK10415 223 IGR 225 (321)
T ss_pred ECh
Confidence 753
No 95
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=48.19 E-value=2e+02 Score=27.17 Aligned_cols=60 Identities=15% Similarity=0.084 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHhhcCCCceeEEEeec-CCCC--------CCHHHHH-HHHHHHHHcCCcceEecCCCcH
Q 019147 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHR-VDTS--------VPIEETI-GEMKKLVEEGKIKYIGLSEASP 167 (345)
Q Consensus 106 ~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~-~~~~--------~~~~~~~-~~l~~l~~~G~ir~iGvS~~~~ 167 (345)
.+.+.+++.++..+ +|+.++|.+|.+.- |... .+.++.+ .+.+.|.+.|- ..+++|||..
T Consensus 162 qt~~~~~~~l~~~~-~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~yeis~fa~ 231 (350)
T PRK08446 162 DNKKLLKEELKLAK-ELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGF-KQYEISNFGK 231 (350)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCC-cEEEeehhhC
Confidence 45777888776644 58999999987753 2211 0112333 34566677786 4588888764
No 96
>PLN02428 lipoic acid synthase
Probab=48.09 E-value=2e+02 Score=27.40 Aligned_cols=158 Identities=14% Similarity=0.225 Sum_probs=82.6
Q ss_pred CCHHHHHHHHHHHHHCCCCeeecC----CCCCCCcHHHHHHHHHhcCCC--CCeEEEeeccccccCccccccCCCHHHHH
Q 019147 39 LSEEDGISIIKHAFSKGITFFDTA----DKYGPYTNEILLGKALKELPR--ENIQVATKFGFVELGFTSVIVKGTPEYVR 112 (345)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA----~~Yg~G~sE~~lG~al~~~~R--~~~~I~tK~~~~~~~~~~~~~~~s~~~i~ 112 (345)
.+.++..++.+.+.+.|++++=-. +.|.++..+ .+.+.++.+.+ ..+.|..=. +.. ..+
T Consensus 130 ~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~-~~~elir~Ir~~~P~i~Ie~L~-pdf--------~~d----- 194 (349)
T PLN02428 130 PDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSG-HFAETVRRLKQLKPEILVEALV-PDF--------RGD----- 194 (349)
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHH-HHHHHHHHHHHhCCCcEEEEeC-ccc--------cCC-----
Confidence 355667788888888998865422 123333343 33444444221 123222211 110 001
Q ss_pred HHHHHHHhhcCCCceeEEEeecCCC-----------CCCHHHHHHHHHHHHHc--CCcc----eEecCCCcHHHHHHHhh
Q 019147 113 SCCEASLRRLDVEYIDLYYQHRVDT-----------SVPIEETIGEMKKLVEE--GKIK----YIGLSEASPDTIRRAHA 175 (345)
Q Consensus 113 ~~ve~SL~~Lg~d~iDl~~lH~~~~-----------~~~~~~~~~~l~~l~~~--G~ir----~iGvS~~~~~~l~~~~~ 175 (345)
++.|++|.-.-+|. +-|+++. ....++.++.|+.+++. |..- -+|+ .-+.+++.+.+.
T Consensus 195 ---~elL~~L~eAG~d~-i~hnlETv~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGL-GET~Edv~e~l~ 269 (349)
T PLN02428 195 ---LGAVETVATSGLDV-FAHNIETVERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLGL-GETDEEVVQTME 269 (349)
T ss_pred ---HHHHHHHHHcCCCE-EccCccCcHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEec-CCCHHHHHHHHH
Confidence 33344443333666 3477754 12457789999999888 7653 2466 455555555433
Q ss_pred c---CCCceecc-cc----------Cccccc-ccccchhHHHHhCCeEEeecCCCC
Q 019147 176 V---HPITAVQL-EW----------SLWARD-IENEIVPLCRELGIGIVPYCPLGR 216 (345)
Q Consensus 176 ~---~~~~~~q~-~~----------n~~~~~-~~~~~~~~~~~~gi~v~a~spl~~ 216 (345)
. ..++++.+ +| +-+... .-..+-+++.+.|...++.+||-.
T Consensus 270 ~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp~vr 325 (349)
T PLN02428 270 DLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGPLVR 325 (349)
T ss_pred HHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 2 44444433 22 111111 114667788888999998888864
No 97
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=47.84 E-value=82 Score=29.91 Aligned_cols=99 Identities=11% Similarity=0.032 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHHHHhhcCCCceeEEEeecCCCC---CCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhhcCCCcee
Q 019147 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS---VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAV 182 (345)
Q Consensus 106 ~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~---~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~ 182 (345)
++.+ -+..+-+.|.++|+++|++-..-+|... .+.+++++.+.. ...++..++. .+...++.+++... +.+
T Consensus 65 ~s~e-~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~---~~~~~~~~l~-~n~~die~A~~~g~-~~v 138 (347)
T PLN02746 65 VPTS-VKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRN---LEGARFPVLT-PNLKGFEAAIAAGA-KEV 138 (347)
T ss_pred CCHH-HHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHh---ccCCceeEEc-CCHHHHHHHHHcCc-CEE
Confidence 4444 4556777799999999998755454321 233455555543 2335555553 47788888887632 333
Q ss_pred ccccCc--------cccccc------ccchhHHHHhCCeEEe
Q 019147 183 QLEWSL--------WARDIE------NEIVPLCRELGIGIVP 210 (345)
Q Consensus 183 q~~~n~--------~~~~~~------~~~~~~~~~~gi~v~a 210 (345)
.+.++. +....+ .+++++|+++|+.+.+
T Consensus 139 ~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~ 180 (347)
T PLN02746 139 AVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRG 180 (347)
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 332211 111111 4788999999998853
No 98
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=47.79 E-value=2.7e+02 Score=27.02 Aligned_cols=109 Identities=16% Similarity=0.101 Sum_probs=58.8
Q ss_pred CCCCCCcHHHHHHHHHhc----CCCCCeEEEeeccccccCccccccCCCHHHHHHHHHHHHhhcC-CCceeEEEeecCCC
Q 019147 63 DKYGPYTNEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLD-VEYIDLYYQHRVDT 137 (345)
Q Consensus 63 ~~Yg~G~sE~~lG~al~~----~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~Lg-~d~iDl~~lH~~~~ 137 (345)
-.|| .|..|-+++++ .+.+-++|.|-+.... --+.+..-+++.-++.. .--+.++.+|.|..
T Consensus 61 ~V~G---g~~~L~~~i~~~~~~~~p~~I~v~~tC~~~l----------iGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf 127 (428)
T cd01965 61 AVFG---GEDNLIEALKNLLSRYKPDVIGVLTTCLTET----------IGDDVAGFIKEFRAEGPEPADFPVVYASTPSF 127 (428)
T ss_pred eeEC---cHHHHHHHHHHHHHhcCCCEEEEECCcchhh----------cCCCHHHHHHHHHhhccCCCCCeEEEeeCCCC
Confidence 3566 46777778776 2344467777664322 11223333333222211 01366888888876
Q ss_pred CCCH----HHHHHHHHH-H------HHcCCcceEecCCC---cHHHHHHHhhcCCCceecc
Q 019147 138 SVPI----EETIGEMKK-L------VEEGKIKYIGLSEA---SPDTIRRAHAVHPITAVQL 184 (345)
Q Consensus 138 ~~~~----~~~~~~l~~-l------~~~G~ir~iGvS~~---~~~~l~~~~~~~~~~~~q~ 184 (345)
.... +.++++|-+ + ++.++|--||-++. +.+.++++++...+.++.+
T Consensus 128 ~g~~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~ 188 (428)
T cd01965 128 KGSHETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIIL 188 (428)
T ss_pred CCcHHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEe
Confidence 5332 234444332 2 23456777876653 3577888888766666554
No 99
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=47.71 E-value=2.5e+02 Score=27.31 Aligned_cols=94 Identities=15% Similarity=0.204 Sum_probs=64.7
Q ss_pred cCCCHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhhcCCCceec
Q 019147 104 VKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQ 183 (345)
Q Consensus 104 ~~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q 183 (345)
.+.+++.+.+.||+..+ |=+|++-+|.-- +.+.++.++++|+ ..|+-+-...-+...+....
T Consensus 138 ~~mt~d~~~~~ie~qa~----~GVDfmTiHcGi-------~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~n~----- 199 (431)
T PRK13352 138 VDMTEDDLFDVIEKQAK----DGVDFMTIHCGV-------TRETLERLKKSGR--IMGIVSRGGSFLAAWMLHNN----- 199 (431)
T ss_pred hhCCHHHHHHHHHHHHH----hCCCEEEEccch-------hHHHHHHHHhcCC--ccCeecCCHHHHHHHHHHcC-----
Confidence 46788889888888876 458888899752 4778888999885 56776655444444332221
Q ss_pred cccCcccccccccchhHHHHhCCeEEeecCCCCcccCC
Q 019147 184 LEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGFFGG 221 (345)
Q Consensus 184 ~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g 221 (345)
.=|++...+ +.+++.|++++|.+. |+.|+=.|
T Consensus 200 -~ENPlye~f-D~lLeI~~~yDVtlS----LGDglRPG 231 (431)
T PRK13352 200 -KENPLYEHF-DYLLEILKEYDVTLS----LGDGLRPG 231 (431)
T ss_pred -CcCchHHHH-HHHHHHHHHhCeeee----ccCCcCCC
Confidence 335666554 589999999999984 66665444
No 100
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=47.64 E-value=21 Score=27.35 Aligned_cols=54 Identities=22% Similarity=0.192 Sum_probs=40.0
Q ss_pred CCCcHHHHHHHhhcCCCceeccccCccccc-ccccchhHHHHhCCeEEeecCCCCc
Q 019147 163 SEASPDTIRRAHAVHPITAVQLEWSLWARD-IENEIVPLCRELGIGIVPYCPLGRG 217 (345)
Q Consensus 163 S~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~v~a~spl~~G 217 (345)
|.++...+.++++...++++|+...-+--- .-..+.++|+++|+.+...+. ..+
T Consensus 3 ~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp TSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 567888899999988889999875543211 125889999999999999886 544
No 101
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=47.47 E-value=2e+02 Score=28.94 Aligned_cols=89 Identities=15% Similarity=0.247 Sum_probs=48.8
Q ss_pred eeEEEeecCCCCCC-HHHHHHHHHHHH------------------HcCCcceEecCC------CcHHHHHHHhhcCCCce
Q 019147 127 IDLYYQHRVDTSVP-IEETIGEMKKLV------------------EEGKIKYIGLSE------ASPDTIRRAHAVHPITA 181 (345)
Q Consensus 127 iDl~~lH~~~~~~~-~~~~~~~l~~l~------------------~~G~ir~iGvS~------~~~~~l~~~~~~~~~~~ 181 (345)
++++.+|.|..... ....-.+++.++ .+++|--||.++ .+...++++++...+.+
T Consensus 117 ~pVi~v~t~~f~g~~~~g~~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~v 196 (513)
T CHL00076 117 SDVILADVNHYRVNELQAADRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEI 196 (513)
T ss_pred CCEEEeCCCCCcccHHHHHHHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeE
Confidence 68999999976532 222212222222 235688888774 34566777877766665
Q ss_pred ecc----------------ccCccc-ccccccchhHHH-HhCCeEEeecCCC
Q 019147 182 VQL----------------EWSLWA-RDIENEIVPLCR-ELGIGIVPYCPLG 215 (345)
Q Consensus 182 ~q~----------------~~n~~~-~~~~~~~~~~~~-~~gi~v~a~spl~ 215 (345)
+.+ .+|+.. +.....+.++.+ +.|+.++...|++
T Consensus 197 n~v~~~g~sl~di~~~~~A~~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiG 248 (513)
T CHL00076 197 NQIIPEGGSVEDLKNLPKAWFNIVPYREVGLMTAKYLEKEFGMPYISTTPMG 248 (513)
T ss_pred EEEECCCCCHHHHHhcccCcEEEEechhhhHHHHHHHHHHhCCCeEeeccCC
Confidence 522 222222 111123344443 5688887767764
No 102
>PRK07328 histidinol-phosphatase; Provisional
Probab=47.28 E-value=2.2e+02 Score=25.70 Aligned_cols=112 Identities=14% Similarity=0.150 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHCCCCeeecCCCCCC------------CcHHHHHHHHHhcC--CCCCe-EEEeeccccccCccccccCCC
Q 019147 43 DGISIIKHAFSKGITFFDTADKYGP------------YTNEILLGKALKEL--PRENI-QVATKFGFVELGFTSVIVKGT 107 (345)
Q Consensus 43 ~~~~~l~~A~~~Gin~~DTA~~Yg~------------G~sE~~lG~al~~~--~R~~~-~I~tK~~~~~~~~~~~~~~~s 107 (345)
...++++.|.+.|+..+=-++|... +.+..-+-..++++ .|+++ -|--++|... +.-
T Consensus 19 ~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i~Il~GiE~--------~~~ 90 (269)
T PRK07328 19 TPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDLYVRLGIEA--------DYH 90 (269)
T ss_pred CHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCCeEEEEEEe--------ccc
Confidence 3678999999999998766555221 11112223333321 11111 1222333221 111
Q ss_pred HHHHHHHHHHHHhhcCCCceeEEEeecCCCC-------------CCHHHHH----HHHHHHHHcCCcceEecCC
Q 019147 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-------------VPIEETI----GEMKKLVEEGKIKYIGLSE 164 (345)
Q Consensus 108 ~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~-------------~~~~~~~----~~l~~l~~~G~ir~iGvS~ 164 (345)
+ .....+++.|++-..||+ +..+|+.+.. ...++++ +.+.++.+.|.+.-||=-.
T Consensus 91 ~-~~~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d 162 (269)
T PRK07328 91 P-GTEEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHPD 162 (269)
T ss_pred C-CcHHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCcc
Confidence 1 123445666777777777 7788986421 1122333 3577788888887777543
No 103
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=47.25 E-value=1.9e+02 Score=25.99 Aligned_cols=65 Identities=15% Similarity=0.026 Sum_probs=36.5
Q ss_pred HHHHHHcCCcceEec--CCCcHHHHHHHhhc-CCCceeccccCcccccccccchhHHHHhCCeEEeecC
Q 019147 148 MKKLVEEGKIKYIGL--SEASPDTIRRAHAV-HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCP 213 (345)
Q Consensus 148 l~~l~~~G~ir~iGv--S~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~sp 213 (345)
|.+..++|+. .+|+ ...++..++.+... ..+.++-++.++++......++..++..|+.++.+-|
T Consensus 3 lk~~l~~g~~-~~g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~ 70 (249)
T TIGR02311 3 FKQALKEGQP-QIGLWLGLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPA 70 (249)
T ss_pred HHHHHHCCCc-eEEEEEeCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECC
Confidence 4455566875 3444 33444545444433 3444556678876554334566677777777776543
No 104
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=47.12 E-value=1.4e+02 Score=27.05 Aligned_cols=107 Identities=11% Similarity=0.127 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCH------HHHHHHHHHHHH-cCCcceEecCCCcHHHHHHHhhc
Q 019147 104 VKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPI------EETIGEMKKLVE-EGKIKYIGLSEASPDTIRRAHAV 176 (345)
Q Consensus 104 ~~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~------~~~~~~l~~l~~-~G~ir~iGvS~~~~~~l~~~~~~ 176 (345)
..++.+...+-++. |.++|+++|++-+.......... .+.++.+..+.+ .-++..+.-..-...........
T Consensus 15 ~~f~~~~~~~ia~~-L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~ 93 (266)
T cd07944 15 WDFGDEFVKAIYRA-LAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASG 93 (266)
T ss_pred ccCCHHHHHHHHHH-HHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhc
Q ss_pred CCCceeccccCcccccccccchhHHHHhCCeEEee
Q 019147 177 HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPY 211 (345)
Q Consensus 177 ~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~ 211 (345)
..++.+.+.+..-.-..-.+.+++++++|+.|...
T Consensus 94 ~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 94 SVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred CCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEE
No 105
>PRK06361 hypothetical protein; Provisional
Probab=46.50 E-value=1.9e+02 Score=24.85 Aligned_cols=187 Identities=16% Similarity=0.087 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHH---HhcC-CCCCeEEEeeccccccCccccccCCCHHHHHHHHHHH
Q 019147 43 DGISIIKHAFSKGITFFDTADKYGPYTNEILLGKA---LKEL-PRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEAS 118 (345)
Q Consensus 43 ~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~a---l~~~-~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~S 118 (345)
...++++.|.+.|+..|=-+++.....-...+-.+ .+.. ...++.| ..|.... ...++.+ ..+...
T Consensus 11 ~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~~~~~~i~v--~~GiE~~-------~~~~~~~-~~~~~~ 80 (212)
T PRK06361 11 IPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEELELYWDIEV--IPGVELT-------HVPPKLI-PKLAKK 80 (212)
T ss_pred CHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHHhhcCCCEE--EEEEEEc-------ccCchhh-chHHHH
Confidence 46789999999999998877775421111111111 1111 1112322 2222110 0112223 333456
Q ss_pred HhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhhcCCCceeccccCcccccccccch
Q 019147 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDIENEIV 198 (345)
Q Consensus 119 L~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~ 198 (345)
+.+++ .|+..+|......+.. ...-.++.+.|.+.-+|=-..-...+.+++....+ .+.+......+.....++
T Consensus 81 ~~~~~---~~~~svH~~~~~~~~~--~~~~~~a~~~~~~dvlaHpd~~~~~~~~~~~~~~~-~lEin~~~~~~~~~~~~l 154 (212)
T PRK06361 81 ARDLG---AEIVVVHGETIVEPVE--EGTNLAAIECEDVDILAHPGLITEEEAELAAENGV-FLEITARKGHSLTNGHVA 154 (212)
T ss_pred HHHCC---CEEEEECCCCcchhhh--hhhHHHHHhCCCCcEecCcchhhHHHHHHHHHcCe-EEEEECCCCcccchHHHH
Confidence 66665 5667899553322221 11114577888877666543222222233332221 222221111222235789
Q ss_pred hHHHHhCCeEEeecCCCCcccCCCCccCCCCCccccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 019147 199 PLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLKFFPRFNGENLDRNKSIYFRIENLAKKYKCTSAQLALAWV 274 (345)
Q Consensus 199 ~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~q~al~~~ 274 (345)
+.+++.|+.++.-|.... + +. ....+.+..++++.|.+..++.-.+.
T Consensus 155 ~~a~~~gi~vv~~SDaH~-------------------------~---~d-~~~~~~~~~i~~~~gl~~~~v~~~~~ 201 (212)
T PRK06361 155 RIAREAGAPLVINTDTHA-------------------------P---SD-LITYEFARKVALGAGLTEKELEEALE 201 (212)
T ss_pred HHHHHhCCcEEEECCCCC-------------------------H---HH-HHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999999999876444431 0 11 12345788888899998888765544
No 106
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=46.31 E-value=2.3e+02 Score=25.71 Aligned_cols=131 Identities=16% Similarity=0.163 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHHCCCCeeec---CCCCCCC----cHHHHHHHHHhcCCCC-CeEEEeeccccccCccccccCCCHHHH
Q 019147 40 SEEDGISIIKHAFSKGITFFDT---ADKYGPY----TNEILLGKALKELPRE-NIQVATKFGFVELGFTSVIVKGTPEYV 111 (345)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DT---A~~Yg~G----~sE~~lG~al~~~~R~-~~~I~tK~~~~~~~~~~~~~~~s~~~i 111 (345)
+.++..+..+.+.+.|+..|+. ++....+ ...+.+.+.++...+. ++-|..|+... .+.+.+
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~----------~~~~~~ 178 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPY----------FDLEDI 178 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCC----------CCHHHH
Confidence 5677888888888999999984 3333221 2345566666552211 56788898743 234455
Q ss_pred HHHHHHHHhhcCCCceeEEEeecCCCC-------------C--------CH-HHHHHHHHHHHHcC--CcceEecCCC-c
Q 019147 112 RSCCEASLRRLDVEYIDLYYQHRVDTS-------------V--------PI-EETIGEMKKLVEEG--KIKYIGLSEA-S 166 (345)
Q Consensus 112 ~~~ve~SL~~Lg~d~iDl~~lH~~~~~-------------~--------~~-~~~~~~l~~l~~~G--~ir~iGvS~~-~ 166 (345)
.+.++ .|+..|.|.|. +|+-... . .. .-.++.+.++++.= .+.-||+... +
T Consensus 179 ~~~a~-~l~~~Gad~i~---~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~ 254 (289)
T cd02810 179 VELAK-AAERAGADGLT---AINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDS 254 (289)
T ss_pred HHHHH-HHHHcCCCEEE---EEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 44333 46777855554 4432100 0 00 11366666666653 5777777764 4
Q ss_pred HHHHHHHhhcCCCceeccc
Q 019147 167 PDTIRRAHAVHPITAVQLE 185 (345)
Q Consensus 167 ~~~l~~~~~~~~~~~~q~~ 185 (345)
.+.+.+++... .+.+|+-
T Consensus 255 ~~da~~~l~~G-Ad~V~vg 272 (289)
T cd02810 255 GEDVLEMLMAG-ASAVQVA 272 (289)
T ss_pred HHHHHHHHHcC-ccHheEc
Confidence 67777766643 5666653
No 107
>PLN02363 phosphoribosylanthranilate isomerase
Probab=46.30 E-value=66 Score=29.08 Aligned_cols=74 Identities=19% Similarity=0.293 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecC-CCcHHHHHHHhhcCCCceeccc
Q 019147 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPITAVQLE 185 (345)
Q Consensus 107 s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~ 185 (345)
+++.++.++ ++|.|+|=+++..........+.+ +.+-.......++.+||- +.+++.+.++++..+++++|+.
T Consensus 56 ~~eda~~a~-----~~GaD~iGfIf~~~SpR~Vs~e~a-~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLH 129 (256)
T PLN02363 56 SARDAAMAV-----EAGADFIGMILWPKSKRSISLSVA-KEISQVAREGGAKPVGVFVDDDANTILRAADSSDLELVQLH 129 (256)
T ss_pred cHHHHHHHH-----HcCCCEEEEecCCCCCCcCCHHHH-HHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCEEEEC
Confidence 355555544 589999998754432233334433 333333333246679995 7888999999988999999996
Q ss_pred c
Q 019147 186 W 186 (345)
Q Consensus 186 ~ 186 (345)
-
T Consensus 130 G 130 (256)
T PLN02363 130 G 130 (256)
T ss_pred C
Confidence 4
No 108
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=46.03 E-value=58 Score=32.15 Aligned_cols=65 Identities=18% Similarity=0.230 Sum_probs=43.6
Q ss_pred HhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecC-CCcHHHHHHHhhcCCCceeccccC
Q 019147 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPITAVQLEWS 187 (345)
Q Consensus 119 L~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~n 187 (345)
...+|.|++=+++...-....+.+.+-+....+. ++.+||- |-+++.+.++++...++++|+.-+
T Consensus 273 a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l~----v~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG~ 338 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAAP----LRYVGVFRNADIEDIVDIAKQLSLAAVQLHGD 338 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhCC----CCEEEEEeCCCHHHHHHHHHHcCCCEEEeCCC
Confidence 4457889888864433223344443333333222 8889996 788899999998899999999764
No 109
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=45.98 E-value=1.4e+02 Score=28.56 Aligned_cols=89 Identities=11% Similarity=0.206 Sum_probs=58.2
Q ss_pred EEeecCCCC-----------CCHHHHHHHHHHHHHcCCcceEec-----C--CCcHHHHHH---HhhcC------CCcee
Q 019147 130 YYQHRVDTS-----------VPIEETIGEMKKLVEEGKIKYIGL-----S--EASPDTIRR---AHAVH------PITAV 182 (345)
Q Consensus 130 ~~lH~~~~~-----------~~~~~~~~~l~~l~~~G~ir~iGv-----S--~~~~~~l~~---~~~~~------~~~~~ 182 (345)
+.||.|+.. .+++++++++++..++-. |.|-+ . |.+.++..+ +++.. +..++
T Consensus 232 iSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~-rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VN 310 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTR-RRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVN 310 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhC-CEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEE
Confidence 679999643 357889999988865433 23322 2 455555444 44444 56789
Q ss_pred ccccCccccc----cc----ccchhHHHHhCCeEEeecCCCCccc
Q 019147 183 QLEWSLWARD----IE----NEIVPLCRELGIGIVPYCPLGRGFF 219 (345)
Q Consensus 183 q~~~n~~~~~----~~----~~~~~~~~~~gi~v~a~spl~~G~L 219 (345)
-++||+.... +. ....+..+++||.+..+...+..+.
T Consensus 311 LIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~DI~ 355 (371)
T PRK14461 311 LIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGVEIA 355 (371)
T ss_pred EecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcChh
Confidence 9999996432 11 4566677899999999888765443
No 110
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=45.67 E-value=1.3e+02 Score=27.37 Aligned_cols=20 Identities=5% Similarity=-0.095 Sum_probs=14.3
Q ss_pred EecCCCCCHHhHHHhhcccC
Q 019147 282 VPIPGTTKIKNLDDNIGSLT 301 (345)
Q Consensus 282 ~vi~g~~~~~~l~enl~a~~ 301 (345)
.+=.|.++++|+++..++.+
T Consensus 209 ~vGFGIs~~e~~~~v~~~AD 228 (265)
T COG0159 209 LVGFGISSPEQAAQVAEAAD 228 (265)
T ss_pred EEecCcCCHHHHHHHHHhCC
Confidence 44467888888888777654
No 111
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=45.50 E-value=90 Score=29.36 Aligned_cols=81 Identities=16% Similarity=0.152 Sum_probs=57.1
Q ss_pred eeEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhhcCCCceeccccCccccc-ccccchhHHHHh
Q 019147 127 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARD-IENEIVPLCREL 204 (345)
Q Consensus 127 iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~ 204 (345)
+++.++--|-.. +-++.+.+|+++..|. +.|=|.++...+..+++....+++|+..+-.-.- .-.++...|+++
T Consensus 197 ~~~~~iEeP~~~----~d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~~i~~~A~~~ 272 (341)
T cd03327 197 YELRWIEEPLIP----DDIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGGITELKKIAALAEAY 272 (341)
T ss_pred cCCccccCCCCc----cCHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 355555555332 2366777888887766 5666778899999999888889999876654211 125889999999
Q ss_pred CCeEEee
Q 019147 205 GIGIVPY 211 (345)
Q Consensus 205 gi~v~a~ 211 (345)
|+.++.+
T Consensus 273 g~~~~~h 279 (341)
T cd03327 273 GVPVVPH 279 (341)
T ss_pred CCeeccc
Confidence 9998754
No 112
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=45.28 E-value=1e+02 Score=27.87 Aligned_cols=65 Identities=18% Similarity=0.205 Sum_probs=49.9
Q ss_pred CHHHHHHHHHHHHhhcC--------------------------CCceeEEEeecCCCCCCH---HHHHHHHHHHHHcCCc
Q 019147 107 TPEYVRSCCEASLRRLD--------------------------VEYIDLYYQHRVDTSVPI---EETIGEMKKLVEEGKI 157 (345)
Q Consensus 107 s~~~i~~~ve~SL~~Lg--------------------------~d~iDl~~lH~~~~~~~~---~~~~~~l~~l~~~G~i 157 (345)
+.+. ++.++++|+++| ....|+++|.-|....+. .++++.|.+|+++|+
T Consensus 113 ~~~d-~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~- 190 (254)
T COG1121 113 NKKD-KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK- 190 (254)
T ss_pred cHHH-HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC-
Confidence 3444 788999999988 456799999988766554 468999999999988
Q ss_pred ceEecCCCcHHHHHHHh
Q 019147 158 KYIGLSEASPDTIRRAH 174 (345)
Q Consensus 158 r~iGvS~~~~~~l~~~~ 174 (345)
.|=+.+|+...+....
T Consensus 191 -tIl~vtHDL~~v~~~~ 206 (254)
T COG1121 191 -TVLMVTHDLGLVMAYF 206 (254)
T ss_pred -EEEEEeCCcHHhHhhC
Confidence 6777888877765543
No 113
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=44.30 E-value=2.3e+02 Score=25.32 Aligned_cols=97 Identities=19% Similarity=0.152 Sum_probs=58.7
Q ss_pred CCCHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcC-CcceEecCCCcHHHHHHHhhcCCCceec
Q 019147 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEASPDTIRRAHAVHPITAVQ 183 (345)
Q Consensus 105 ~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvS~~~~~~l~~~~~~~~~~~~q 183 (345)
.++.+... .+-+.|.++|+++|++-+ |.. -+.-++.++.+.+.+ .++..+.+....+.++.+.+. .++.+.
T Consensus 16 ~~~~~~k~-~i~~~L~~~Gv~~iE~g~---p~~---~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~-g~~~i~ 87 (259)
T cd07939 16 AFSREEKL-AIARALDEAGVDEIEVGI---PAM---GEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRC-GVTAVH 87 (259)
T ss_pred CCCHHHHH-HHHHHHHHcCCCEEEEec---CCC---CHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhC-CcCEEE
Confidence 35555544 455669999999999852 321 123356677777643 367777776777888777664 334444
Q ss_pred cccCcccc--------cc------cccchhHHHHhCCeEE
Q 019147 184 LEWSLWAR--------DI------ENEIVPLCRELGIGIV 209 (345)
Q Consensus 184 ~~~n~~~~--------~~------~~~~~~~~~~~gi~v~ 209 (345)
+.++.-+. .. -.+.+++|+++|+.+.
T Consensus 88 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~ 127 (259)
T cd07939 88 ISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS 127 (259)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 43222111 11 1367889999998765
No 114
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=44.29 E-value=1.6e+02 Score=27.72 Aligned_cols=72 Identities=11% Similarity=0.111 Sum_probs=51.0
Q ss_pred HHHHHHHHHcCCcc-eEecCCCcHHHHHHHhhcCCCceeccccCcccccccccchhHHHHhCCeEEeecCCCCcc
Q 019147 145 IGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGF 218 (345)
Q Consensus 145 ~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~ 218 (345)
++.+.+++++-.|. +.|=|-++...+..++.....+++|+..+.+-.- .++++.|+++||.++..+.+..++
T Consensus 173 ~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GGi--t~~lkiA~~~gi~v~v~s~~es~i 245 (327)
T PRK02901 173 VEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGGV--RAALDIAEQIGLPVVVSSALDTSV 245 (327)
T ss_pred HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCCH--HHHHHHHHHcCCcEEEeCCcccHH
Confidence 55666666553333 4455567788888888888889999887764431 467789999999999887776554
No 115
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=44.25 E-value=1.3e+02 Score=28.32 Aligned_cols=69 Identities=12% Similarity=0.156 Sum_probs=51.0
Q ss_pred HHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhhcCCCceeccccCcccc-cccccchhHHHHhCCeEEeec
Q 019147 144 TIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR-DIENEIVPLCRELGIGIVPYC 212 (345)
Q Consensus 144 ~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~s 212 (345)
-++.+.+|+++.-+. +.|=|.++...+..+++..-++++|+....+-. ..-.++.+.|+++||.++.++
T Consensus 215 d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 215 NVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred CHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCcEeccC
Confidence 377788888876555 556677889999998887778899987654321 112588999999999998654
No 116
>PRK12928 lipoyl synthase; Provisional
Probab=44.23 E-value=1.5e+02 Score=27.26 Aligned_cols=161 Identities=14% Similarity=0.192 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHCCCCeeecCCCCC---CCcHHHHHHHHHhcCCCCCeEEEeeccccccCccccccCCCHHHHHHHH
Q 019147 39 LSEEDGISIIKHAFSKGITFFDTADKYG---PYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCC 115 (345)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg---~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~v 115 (345)
.+.++..+.++.+.+.|++++--..... ....-..+-+.++.+....-.+..++ ++++.+.+ .
T Consensus 87 ~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~~I~~-------------ltp~~~~~-~ 152 (290)
T PRK12928 87 LDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTGIEV-------------LTPDFWGG-Q 152 (290)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCCEEEE-------------eccccccC-C
Q ss_pred HHHHhhcCCCceeEEEe---------ecCCCCCCHHHHHHHHHHHHHcC---CcceE---ecCCCcHHHHHHHhhc---C
Q 019147 116 EASLRRLDVEYIDLYYQ---------HRVDTSVPIEETIGEMKKLVEEG---KIKYI---GLSEASPDTIRRAHAV---H 177 (345)
Q Consensus 116 e~SL~~Lg~d~iDl~~l---------H~~~~~~~~~~~~~~l~~l~~~G---~ir~i---GvS~~~~~~l~~~~~~---~ 177 (345)
++.|+.|.-...+++.. .........++.++.++.+++.| .++.- |+ +-+.+++.+.+.. .
T Consensus 153 ~e~L~~l~~Ag~~i~~hnlEt~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel 231 (290)
T PRK12928 153 RERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAV 231 (290)
T ss_pred HHHHHHHHHcCchhhcccCcCcHHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhc
Q ss_pred CCceecc-ccCc-----------ccccccccchhHHHHhCCeEEeecCC
Q 019147 178 PITAVQL-EWSL-----------WARDIENEIVPLCRELGIGIVPYCPL 214 (345)
Q Consensus 178 ~~~~~q~-~~n~-----------~~~~~~~~~~~~~~~~gi~v~a~spl 214 (345)
+++.+.+ +|.. +.+.....+.+.+.+.|...++.+||
T Consensus 232 ~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~~p~ 280 (290)
T PRK12928 232 GCDRLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIARELGFSHVRSGPL 280 (290)
T ss_pred CCCEEEEEcCCCCCccCCceeeccCHHHHHHHHHHHHHcCCceeEecCc
No 117
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=44.13 E-value=57 Score=31.02 Aligned_cols=90 Identities=10% Similarity=0.197 Sum_probs=55.4
Q ss_pred EEEeecCCCC-----------CCHHHHHHHHHHHHH-cCC---cceEecC--CCcHHHHHH---HhhcCCCceeccccCc
Q 019147 129 LYYQHRVDTS-----------VPIEETIGEMKKLVE-EGK---IKYIGLS--EASPDTIRR---AHAVHPITAVQLEWSL 188 (345)
Q Consensus 129 l~~lH~~~~~-----------~~~~~~~~~l~~l~~-~G~---ir~iGvS--~~~~~~l~~---~~~~~~~~~~q~~~n~ 188 (345)
.+-||.+++. .+++++++++.++.+ .|. |+++=+. |.+.+++.+ ++...++.++-++||+
T Consensus 218 aiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp 297 (355)
T TIGR00048 218 AISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNP 297 (355)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEeccc
Confidence 3678998632 236788888876654 442 3344333 344455444 4444556788899998
Q ss_pred cccc----cc----ccchhHHHHhCCeEEeecCCCCcc
Q 019147 189 WARD----IE----NEIVPLCRELGIGIVPYCPLGRGF 218 (345)
Q Consensus 189 ~~~~----~~----~~~~~~~~~~gi~v~a~spl~~G~ 218 (345)
+... +. ..+.++.+++|+.+......+..+
T Consensus 298 ~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~di 335 (355)
T TIGR00048 298 FPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGDDI 335 (355)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcch
Confidence 6531 11 245566778899999887776544
No 118
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=44.10 E-value=87 Score=29.86 Aligned_cols=207 Identities=16% Similarity=0.083 Sum_probs=93.3
Q ss_pred CHHHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHH---HHHhcCCCCCeEEEeeccccccCccccccCCCHHHHHHHHH
Q 019147 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLG---KALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCE 116 (345)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG---~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve 116 (345)
+.++..+.|+.|.+.|++.+=|+=+...+..+..+. +.++......+.|..=+.+..-. .-..+.+.+
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~----~lg~~~~dl----- 82 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLK----KLGISYDDL----- 82 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHH----TTT-BTTBT-----
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHH----HcCCCHHHH-----
Confidence 578899999999999999999997775432332222 22221233445555444332100 001111112
Q ss_pred HHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhhcC-CCceeccccCccccccc-
Q 019147 117 ASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH-PITAVQLEWSLWARDIE- 194 (345)
Q Consensus 117 ~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~-~~~~~q~~~n~~~~~~~- 194 (345)
..++.||++.|= |. .-.. .+.+.+|-+.|.--.+=.|+.+.+.+..+.+.. .++-+..-+|. .+.+.
T Consensus 83 ~~~~~lGi~~lR---lD---~Gf~----~~~ia~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNf-YPr~~T 151 (357)
T PF05913_consen 83 SFFKELGIDGLR---LD---YGFS----GEEIAKLSKNGIKIELNASTITEEELDELIKYGANFSNIIACHNF-YPRPYT 151 (357)
T ss_dssp HHHHHHT-SEEE---ES---SS-S----CHHHHHHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE----B-STT-
T ss_pred HHHHHcCCCEEE---EC---CCCC----HHHHHHHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEEecc-cCCCCC
Confidence 135566644322 22 1111 233334444477666777888888888887764 34444444443 44333
Q ss_pred -------ccchhHHHHhCCeEEeecCCCCcccCCCCccCCCCCccccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHH
Q 019147 195 -------NEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLKFFPRFNGENLDRNKSIYFRIENLAKKYKCTSA 267 (345)
Q Consensus 195 -------~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~ 267 (345)
.+.-.+.++.|+.+.|+-|-.. ...|+ ..++ .| .+| +|---+.
T Consensus 152 GLs~~~f~~~n~~~k~~gi~~~AFI~g~~-~~rGP-----l~~G-----LP-----TlE--------------~hR~~~p 201 (357)
T PF05913_consen 152 GLSEEFFIEKNQLLKEYGIKTAAFIPGDE-NKRGP-----LYEG-----LP-----TLE--------------KHRNLPP 201 (357)
T ss_dssp SB-HHHHHHHHHHHHHTT-EEEEEE--SS-S-BTT-----T-S-------B-----SBG--------------GGTTS-H
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEEecCCC-cccCC-----ccCC-----CC-----ccH--------------HHcCCCH
Confidence 2345567888999999877653 22222 0000 01 011 2222334
Q ss_pred HHHHHHHHhcCCCeEecCCCC--CHHhHHHh
Q 019147 268 QLALAWVLAQGEDVVPIPGTT--KIKNLDDN 296 (345)
Q Consensus 268 q~al~~~l~~~~v~~vi~g~~--~~~~l~en 296 (345)
.+|.+.+...+.+.-|++|=. +.+.+++.
T Consensus 202 ~~aa~~L~~~~~iD~V~IGD~~~s~~el~~~ 232 (357)
T PF05913_consen 202 YAAALELFALGLIDDVIIGDPFASEEELKQL 232 (357)
T ss_dssp HHHHHHHHHTTT--EEEE-SC---HHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEECCCcCCHHHHHHH
Confidence 556778888888889999865 33444443
No 119
>PRK06256 biotin synthase; Validated
Probab=43.43 E-value=2.8e+02 Score=25.85 Aligned_cols=101 Identities=22% Similarity=0.251 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHHCCCCee-ecCCCCCCCcH-HHHHHHHHhcCCC-CCeEEEeeccccccCccccccCCCHHHHHHHH
Q 019147 39 LSEEDGISIIKHAFSKGITFF-DTADKYGPYTN-EILLGKALKELPR-ENIQVATKFGFVELGFTSVIVKGTPEYVRSCC 115 (345)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~-DTA~~Yg~G~s-E~~lG~al~~~~R-~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~v 115 (345)
.+.++..+.++.+.+.|+..| -.+..++.... -..+-+.++.+.+ -.+.+.+-.+. .+++.+
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g~-----------l~~e~l---- 155 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLGL-----------LTEEQA---- 155 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCCc-----------CCHHHH----
Confidence 477889999999999998633 22323332111 1234445554221 23333332221 233333
Q ss_pred HHHHhhcCCCceeEEEeec-------CCCCCCHHHHHHHHHHHHHcCC
Q 019147 116 EASLRRLDVEYIDLYYQHR-------VDTSVPIEETIGEMKKLVEEGK 156 (345)
Q Consensus 116 e~SL~~Lg~d~iDl~~lH~-------~~~~~~~~~~~~~l~~l~~~G~ 156 (345)
+-|+..|++.+-+- +.. ......+++.+++++.+++.|.
T Consensus 156 -~~LkeaG~~~v~~~-lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi 201 (336)
T PRK06256 156 -ERLKEAGVDRYNHN-LETSRSYFPNVVTTHTYEDRIDTCEMVKAAGI 201 (336)
T ss_pred -HHHHHhCCCEEecC-CccCHHHHhhcCCCCCHHHHHHHHHHHHHcCC
Confidence 34777786654321 111 1111235677788888888775
No 120
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=42.43 E-value=2.7e+02 Score=25.34 Aligned_cols=124 Identities=12% Similarity=0.051 Sum_probs=64.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCeeecCCCC--------CCCcHHHHHHHHHhcCCCCCeEEEeeccccccCccccccCCCHH
Q 019147 38 PLSEEDGISIIKHAFSKGITFFDTADKY--------GPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPE 109 (345)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gin~~DTA~~Y--------g~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~ 109 (345)
..+.++..++.....+.||..|+....- -.-..++.+..+-+..++.++...+...... ....-|.
T Consensus 17 ~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~------~~~~~p~ 90 (275)
T cd07937 17 RMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLV------GYRHYPD 90 (275)
T ss_pred eccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhccccccc------CccCCCc
Confidence 3467888888888889999999987421 1112334444333323444444333321000 0111133
Q ss_pred HH-HHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEec-----CCCcHHHHHHH
Q 019147 110 YV-RSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGL-----SEASPDTIRRA 173 (345)
Q Consensus 110 ~i-~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGv-----S~~~~~~l~~~ 173 (345)
.+ +.-++.+ ...|++.|-+ ..+..+++.+.+.++..++.|+.-.+.+ +.++.+.+.++
T Consensus 91 ~~~~~di~~~-~~~g~~~iri-----~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~ 154 (275)
T cd07937 91 DVVELFVEKA-AKNGIDIFRI-----FDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKL 154 (275)
T ss_pred HHHHHHHHHH-HHcCCCEEEE-----eecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHH
Confidence 33 3333333 3446555443 2233347778888899999997544444 34555555544
No 121
>PRK09061 D-glutamate deacylase; Validated
Probab=41.96 E-value=2.7e+02 Score=27.89 Aligned_cols=113 Identities=11% Similarity=0.073 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeeccccccCccccccCCCHHHHHHHHHHHHhhc
Q 019147 43 DGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRL 122 (345)
Q Consensus 43 ~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~L 122 (345)
+..++++.|++.|+..|=+...|-.+.+...+-+.++...+....|.+-+..... .++.....++++.++..
T Consensus 170 ~m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~--------~~~~~e~~av~~~i~lA 241 (509)
T PRK09061 170 EILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLSN--------VDPRSSVDAYQELIAAA 241 (509)
T ss_pred HHHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCccc--------CCchhHHHHHHHHHHHH
Confidence 3677788899999999977666755545666666666544456666665542210 01122223333333322
Q ss_pred CCCceeEEEeecCCC-CCCHHHHHHHHHHHHHcCCcceEecC
Q 019147 123 DVEYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLS 163 (345)
Q Consensus 123 g~d~iDl~~lH~~~~-~~~~~~~~~~l~~l~~~G~ir~iGvS 163 (345)
..--.-+.+.|-... .....+.++.+++++++|.--..-++
T Consensus 242 ~~~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~ 283 (509)
T PRK09061 242 AETGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAY 283 (509)
T ss_pred HHhCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEec
Confidence 211133566675432 23467789999999999853333343
No 122
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=41.92 E-value=3e+02 Score=25.89 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCeeecC
Q 019147 38 PLSEEDGISIIKHAFSKGITFFDTA 62 (345)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gin~~DTA 62 (345)
..+.++..++++..-+.||..|+.+
T Consensus 21 ~f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 21 QYTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred ccCHHHHHHHHHHHHHcCCCEEEee
Confidence 3577889999999999999999985
No 123
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=41.91 E-value=74 Score=32.72 Aligned_cols=75 Identities=12% Similarity=0.148 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecC-CCcHHHHHHHhhcCCCceecccc
Q 019147 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPITAVQLEW 186 (345)
Q Consensus 108 ~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~ 186 (345)
.+.++.+ ..+|.|+|=+++..........+.+...+.+....-.++.+||- |.+++.+.++.+...++++|+.-
T Consensus 13 ~eda~~a-----~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLHG 87 (610)
T PRK13803 13 SALISKA-----VDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLHG 87 (610)
T ss_pred HHHHHHH-----HHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECC
Confidence 4555544 45899999988665444444455523333333333357789995 78899999999889999999965
Q ss_pred C
Q 019147 187 S 187 (345)
Q Consensus 187 n 187 (345)
+
T Consensus 88 ~ 88 (610)
T PRK13803 88 A 88 (610)
T ss_pred C
Confidence 4
No 124
>PRK14017 galactonate dehydratase; Provisional
Probab=41.13 E-value=1.6e+02 Score=28.15 Aligned_cols=70 Identities=16% Similarity=0.227 Sum_probs=53.4
Q ss_pred HHHHHHHHHcCCcc-eEecCCCcHHHHHHHhhcCCCceeccccCcccc-cccccchhHHHHhCCeEEeecCC
Q 019147 145 IGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR-DIENEIVPLCRELGIGIVPYCPL 214 (345)
Q Consensus 145 ~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~spl 214 (345)
++.+.+|++...+. +.|=|.++...+..+++...++++|+..+.+-. ..-.++.+.|+.+||.++.++..
T Consensus 217 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 288 (382)
T PRK14017 217 AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCPL 288 (382)
T ss_pred HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCCC
Confidence 57788888887666 566677899999999988888999987665421 11258899999999999876543
No 125
>TIGR00035 asp_race aspartate racemase.
Probab=41.07 E-value=1.2e+02 Score=26.59 Aligned_cols=63 Identities=19% Similarity=0.130 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHHHhhcCCCceeEEEeecCCCCC------------CHHHHHHHHHHHHHcCCcceEecCCCcHHH
Q 019147 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSV------------PIEETIGEMKKLVEEGKIKYIGLSEASPDT 169 (345)
Q Consensus 106 ~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~------------~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~ 169 (345)
-+.+..++-++..-.+.+.++++.+.+++|+... ....+.+.++.|.+.| +.+|-++..++..
T Consensus 14 at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~ 88 (229)
T TIGR00035 14 ATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHK 88 (229)
T ss_pred HHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHH
Confidence 4567788888888888999999999999985321 1234666777777665 7889887766655
No 126
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=40.94 E-value=2.8e+02 Score=25.16 Aligned_cols=154 Identities=16% Similarity=0.162 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHH--HHHhc-CCCCC-eEEEeeccccccCccccccCCCHHHHHHHHHH
Q 019147 42 EDGISIIKHAFSKGITFFDTADKYGPYTNEILLG--KALKE-LPREN-IQVATKFGFVELGFTSVIVKGTPEYVRSCCEA 117 (345)
Q Consensus 42 ~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG--~al~~-~~R~~-~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~ 117 (345)
+...+.++..-+.|..+|..++.=+.+..+..+. +.|+. ..-+- ..++.. +.++..+...+..
T Consensus 15 ~~l~~~~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r-------------~~n~~~l~~~L~~ 81 (272)
T TIGR00676 15 ENLWETVDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCI-------------GATREEIREILRE 81 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeec-------------CCCHHHHHHHHHH
Confidence 4455556666688999999887655333333332 33332 11111 112222 2456677776664
Q ss_pred HHhhcCCCceeEEEeecCCC-------CCCHHHHHHHHHHHHHc-CCcceEecCCCcH---------HHHHHHhhc----
Q 019147 118 SLRRLDVEYIDLYYQHRVDT-------SVPIEETIGEMKKLVEE-GKIKYIGLSEASP---------DTIRRAHAV---- 176 (345)
Q Consensus 118 SL~~Lg~d~iDl~~lH~~~~-------~~~~~~~~~~l~~l~~~-G~ir~iGvS~~~~---------~~l~~~~~~---- 176 (345)
. ..+|++ +++.|-.... ...+....+-++.+++. |. -+||+..++. ++++.+.++
T Consensus 82 ~-~~~Gi~--nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~-f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aG 157 (272)
T TIGR00676 82 Y-RELGIR--HILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGD-FDIGVAAYPEKHPEAPNLEEDIENLKRKVDAG 157 (272)
T ss_pred H-HHCCCC--EEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCC-eeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 4 777755 3444433211 12233455555555554 43 4688776431 234444333
Q ss_pred CCCceeccccCcccccccccchhHHHHhCCeEEeecCCCCccc
Q 019147 177 HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGFF 219 (345)
Q Consensus 177 ~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L 219 (345)
..+-+-|.-|+. ..-.++++.|++.||.+ |+--|++
T Consensus 158 A~f~iTQ~~fd~---~~~~~~~~~~~~~gi~~----PIi~Gi~ 193 (272)
T TIGR00676 158 ADYAITQLFFDN---DDYYRFVDRCRAAGIDV----PIIPGIM 193 (272)
T ss_pred CCeEeeccccCH---HHHHHHHHHHHHcCCCC----CEecccC
Confidence 346667776665 22257888999998765 5544553
No 127
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=40.89 E-value=1.2e+02 Score=29.80 Aligned_cols=105 Identities=27% Similarity=0.316 Sum_probs=51.5
Q ss_pred CCHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCC-CcHHHHHHH---hhcCCCce
Q 019147 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRA---HAVHPITA 181 (345)
Q Consensus 106 ~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~-~~~~~l~~~---~~~~~~~~ 181 (345)
-+.+.+++.++..++ |+.++|++|.+.-... +++ .+.+++|++..-. +. -..+....+ +.... .
T Consensus 227 qT~e~~~~~l~~~~~-l~~~~is~y~L~~~pg-T~l-------~~~~~~g~l~~~~-~~~~~~~my~~~~~~L~~~G--y 294 (449)
T PRK09058 227 QTPEIWQQDLAIVRD-LGLDGVDLYALNLLPG-TPL-------AKAVEKGKLPPPA-TPAERADMYAYGVEFLAKAG--W 294 (449)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEeccccCCC-CHH-------HHHHHcCCCCCCC-CHHHHHHHHHHHHHHHHHCC--C
Confidence 467778887777654 8999999998763321 111 2234445432100 00 000111111 11122 2
Q ss_pred eccccCcccccc-cccchhHHHHhCCeEEeecCCCCcccCCC
Q 019147 182 VQLEWSLWARDI-ENEIVPLCRELGIGIVPYCPLGRGFFGGK 222 (345)
Q Consensus 182 ~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a~spl~~G~L~g~ 222 (345)
.|++.+-+.+.. +.......-..+..+++.++=|.|.+.+.
T Consensus 295 ~~yeis~far~~~~~~~~n~~~~~~~~~lg~G~gA~s~~~~~ 336 (449)
T PRK09058 295 RQLSNSHWARTTRERNLYNLLIKQGAECLPFGAGAGGSIGGY 336 (449)
T ss_pred eEEeeeeeecCCccccHHHHHHcCCCCEEEEccCcccccCCE
Confidence 444444443321 11233334445778888888888877553
No 128
>PRK07094 biotin synthase; Provisional
Probab=40.67 E-value=2.1e+02 Score=26.53 Aligned_cols=97 Identities=19% Similarity=0.259 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHHHCCCCeeecC----CCCCCCcHHHHHHHHHhcCCC-CCeEEEeeccccccCccccccCCCHHHHHH
Q 019147 39 LSEEDGISIIKHAFSKGITFFDTA----DKYGPYTNEILLGKALKELPR-ENIQVATKFGFVELGFTSVIVKGTPEYVRS 113 (345)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA----~~Yg~G~sE~~lG~al~~~~R-~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~ 113 (345)
.+.++..+.++.+.+.|++.|--. +.|. ...+-+.++.+.. ..+.+..-.+ ..+.+.+
T Consensus 70 ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~----~~~l~~l~~~i~~~~~l~i~~~~g-----------~~~~e~l-- 132 (323)
T PRK07094 70 LSPEEILECAKKAYELGYRTIVLQSGEDPYYT----DEKIADIIKEIKKELDVAITLSLG-----------ERSYEEY-- 132 (323)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCC----HHHHHHHHHHHHccCCceEEEecC-----------CCCHHHH--
Confidence 367888888899999999877422 2232 2334445544222 2343322111 1223332
Q ss_pred HHHHHHhhcCCCceeEEEeecC--------CCCCCHHHHHHHHHHHHHcCC
Q 019147 114 CCEASLRRLDVEYIDLYYQHRV--------DTSVPIEETIGEMKKLVEEGK 156 (345)
Q Consensus 114 ~ve~SL~~Lg~d~iDl~~lH~~--------~~~~~~~~~~~~l~~l~~~G~ 156 (345)
+.|+..|.+.+-+ -+... ......++.+++++.+++.|.
T Consensus 133 ---~~Lk~aG~~~v~~-glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi 179 (323)
T PRK07094 133 ---KAWKEAGADRYLL-RHETADKELYAKLHPGMSFENRIACLKDLKELGY 179 (323)
T ss_pred ---HHHHHcCCCEEEe-ccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Confidence 3466667655432 11111 112345677788888888775
No 129
>PRK15108 biotin synthase; Provisional
Probab=40.42 E-value=3.2e+02 Score=25.77 Aligned_cols=104 Identities=13% Similarity=0.195 Sum_probs=57.0
Q ss_pred CCHHHHHHHHHHHHHCCCCeeecCCCC-CC-CcHHHHHHHHHhcCCCCCeEEEeeccccccCccccccCCCHHHHHHHHH
Q 019147 39 LSEEDGISIIKHAFSKGITFFDTADKY-GP-YTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCE 116 (345)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA~~Y-g~-G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve 116 (345)
.+.++..+..+.+.+.|++-|--.... +. ...-+.+-+.++.++...+.++.-.|. .+.+.++
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G~-----------ls~e~l~---- 140 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETCMTLGT-----------LSESQAQ---- 140 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCCEEEEeCCc-----------CCHHHHH----
Confidence 577888888888889999988432221 11 112245566665533222333222221 2333333
Q ss_pred HHHhhcCCCceeEEEeecC------CCCCCHHHHHHHHHHHHHcCCcc
Q 019147 117 ASLRRLDVEYIDLYYQHRV------DTSVPIEETIGEMKKLVEEGKIK 158 (345)
Q Consensus 117 ~SL~~Lg~d~iDl~~lH~~------~~~~~~~~~~~~l~~l~~~G~ir 158 (345)
-|+..|+|++.+-+=-.| -....+++.++.++.+++.|.--
T Consensus 141 -~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v 187 (345)
T PRK15108 141 -RLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKV 187 (345)
T ss_pred -HHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCce
Confidence 366667775443211111 11235788999999999999743
No 130
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=40.38 E-value=3.1e+02 Score=25.55 Aligned_cols=102 Identities=14% Similarity=0.074 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHHC-CCCeeecCCCCCCC--cHHHHHHHHHhc---C-CCCCeEEEeeccccccCccccccCCCHHHHH
Q 019147 40 SEEDGISIIKHAFSK-GITFFDTADKYGPY--TNEILLGKALKE---L-PRENIQVATKFGFVELGFTSVIVKGTPEYVR 112 (345)
Q Consensus 40 ~~~~~~~~l~~A~~~-Gin~~DTA~~Yg~G--~sE~~lG~al~~---~-~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~ 112 (345)
+.++..++++...+. ||+.+--+- |.- .+...+.+.++. . ....+-|.|+.... .+..+.
T Consensus 120 ~~~e~~~~i~~i~~~~~I~~VilSG--GDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~-----------~p~rit 186 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEIWEVILTG--GDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVA-----------DPARVT 186 (321)
T ss_pred CHHHHHHHHHHHHhCCCccEEEEeC--CCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCccc-----------ChhhcC
Confidence 556777788776654 887552111 110 122333333333 2 12335566665321 123334
Q ss_pred HHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCC
Q 019147 113 SCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK 156 (345)
Q Consensus 113 ~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ 156 (345)
..+-+.|++.|.. ..+.+|......-.++++++++.|++.|.
T Consensus 187 ~ell~~L~~~g~~--v~i~l~~~h~~el~~~~~~ai~~L~~~Gi 228 (321)
T TIGR03822 187 PALIAALKTSGKT--VYVALHANHARELTAEARAACARLIDAGI 228 (321)
T ss_pred HHHHHHHHHcCCc--EEEEecCCChhhcCHHHHHHHHHHHHcCC
Confidence 4444566666632 35677775443335678889999998885
No 131
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=40.15 E-value=68 Score=29.74 Aligned_cols=108 Identities=12% Similarity=0.077 Sum_probs=63.9
Q ss_pred CCcceEecCCCcHHHHHHHhhc---CCCceeccccCcccc---cccccchhHHHHhCCeEEeecCCCCcccCCCCccCCC
Q 019147 155 GKIKYIGLSEASPDTIRRAHAV---HPITAVQLEWSLWAR---DIENEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESV 228 (345)
Q Consensus 155 G~ir~iGvS~~~~~~l~~~~~~---~~~~~~q~~~n~~~~---~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~ 228 (345)
.++-.+--.+++.+.+.++.+. ..+...-..+|-+.. ..+..+.+++++.++-++. +|.=+.+
T Consensus 156 ~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~v~~~nTIC~aT~~RQ~a~~~La~~vD~miVV-----Gg~~SsN------ 224 (298)
T PRK01045 156 DKLALVTQTTLSVDDTAEIIAALKERFPEIQGPPKDDICYATQNRQEAVKELAPQADLVIVV-----GSKNSSN------ 224 (298)
T ss_pred CcEEEEEcCCCcHHHHHHHHHHHHHhCcCcccCCCCCcchhhHHHHHHHHHHHhhCCEEEEE-----CCCCCcc------
Confidence 4455555566777766655443 111111111232221 1235778888887777665 2321110
Q ss_pred CCccccccCCCCCCcchhhhHHHHHHHHHHHHHcCC------CHHHHHHHHHHhcCCCeEecCCCCCHHhHHHhh
Q 019147 229 PLDSFLKFFPRFNGENLDRNKSIYFRIENLAKKYKC------TSAQLALAWVLAQGEDVVPIPGTTKIKNLDDNI 297 (345)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~------s~~q~al~~~l~~~~v~~vi~g~~~~~~l~enl 297 (345)
-.+|.++|++++. ++.++-..|+.... ...+..|+|+|+.+-+.+
T Consensus 225 -----------------------T~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~-~VGitaGASTP~~li~eV 275 (298)
T PRK01045 225 -----------------------SNRLREVAEEAGAPAYLIDDASEIDPEWFKGVK-TVGVTAGASAPEWLVQEV 275 (298)
T ss_pred -----------------------HHHHHHHHHHHCCCEEEECChHHCcHHHhcCCC-EEEEEecCCCCHHHHHHH
Confidence 1278899998874 68999999997654 357789999999775543
No 132
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=40.13 E-value=2.7e+02 Score=24.68 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHHCCCCeeecCC
Q 019147 39 LSEEDGISIIKHAFSKGITFFDTAD 63 (345)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA~ 63 (345)
.+.++..++++...+.|+..|+...
T Consensus 16 ~s~e~~~~i~~~L~~~GV~~IEvg~ 40 (265)
T cd03174 16 FSTEDKLEIAEALDEAGVDSIEVGS 40 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecc
Confidence 4778899999999999999999763
No 133
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=39.92 E-value=2.2e+02 Score=26.78 Aligned_cols=102 Identities=20% Similarity=0.187 Sum_probs=57.3
Q ss_pred cCCCHHHHHHHHHHHHhhcCCCceeEEEee---------cCCCCCCHHHHHHHHHHHHHc-CCcceEecCC---CcHHHH
Q 019147 104 VKGTPEYVRSCCEASLRRLDVEYIDLYYQH---------RVDTSVPIEETIGEMKKLVEE-GKIKYIGLSE---ASPDTI 170 (345)
Q Consensus 104 ~~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH---------~~~~~~~~~~~~~~l~~l~~~-G~ir~iGvS~---~~~~~l 170 (345)
+.++.+.+.+ +-+.|.+.|+++|.+-..- .+. ..+. ++.++.+++. ...+...+.. .+.+.+
T Consensus 20 ~~f~~~~~~~-i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~-~~~~---~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl 94 (337)
T PRK08195 20 HQYTLEQVRA-IARALDAAGVPVIEVTHGDGLGGSSFNYGFG-AHTD---EEYIEAAAEVVKQAKIAALLLPGIGTVDDL 94 (337)
T ss_pred CccCHHHHHH-HHHHHHHcCCCEEEeecCCCCCCccccCCCC-CCCH---HHHHHHHHHhCCCCEEEEEeccCcccHHHH
Confidence 3466666655 5556999999999985321 111 1222 3444444322 2344444332 245677
Q ss_pred HHHhhcCCCceeccccCcccccccccchhHHHHhCCeEEee
Q 019147 171 RRAHAVHPITAVQLEWSLWARDIENEIVPLCRELGIGIVPY 211 (345)
Q Consensus 171 ~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~ 211 (345)
+.+.+. .++.+.+.++.-..+.-.+.+++++++|+.+...
T Consensus 95 ~~a~~~-gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 95 KMAYDA-GVRVVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHHHc-CCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 776654 4566555444322222357889999999887764
No 134
>COG0218 Predicted GTPase [General function prediction only]
Probab=39.90 E-value=2.5e+02 Score=24.37 Aligned_cols=100 Identities=16% Similarity=-0.005 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHC------CCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeeccccccCccccccCCCHHHHHHHH
Q 019147 42 EDGISIIKHAFSK------GITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCC 115 (345)
Q Consensus 42 ~~~~~~l~~A~~~------Gin~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~v 115 (345)
+...+++...++. .+-.+|.-..--. .+..+=++|......=++|.||..- .......+.+
T Consensus 91 e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~--~D~em~~~l~~~~i~~~vv~tK~DK-----------i~~~~~~k~l 157 (200)
T COG0218 91 EKWKKLIEEYLEKRANLKGVVLLIDARHPPKD--LDREMIEFLLELGIPVIVVLTKADK-----------LKKSERNKQL 157 (200)
T ss_pred HHHHHHHHHHHhhchhheEEEEEEECCCCCcH--HHHHHHHHHHHcCCCeEEEEEcccc-----------CChhHHHHHH
Confidence 4456666666543 4557776544332 5677778888777788899999752 3456677888
Q ss_pred HHHHhhcCCCceeE--EEeecCCCCCCHHHHHHHHHHHHHc
Q 019147 116 EASLRRLDVEYIDL--YYQHRVDTSVPIEETIGEMKKLVEE 154 (345)
Q Consensus 116 e~SL~~Lg~d~iDl--~~lH~~~~~~~~~~~~~~l~~l~~~ 154 (345)
....+.|+.+..|- +++........+++++..+.+....
T Consensus 158 ~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 158 NKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 88998998777765 4444444445578888888776543
No 135
>PRK06740 histidinol-phosphatase; Validated
Probab=39.89 E-value=3.2e+02 Score=25.62 Aligned_cols=50 Identities=10% Similarity=0.067 Sum_probs=32.2
Q ss_pred HHHHHHHhhcCCCceeEEEeecCCCC-----C--------CH----HHHHHHHHHHHHcCCcceEecC
Q 019147 113 SCCEASLRRLDVEYIDLYYQHRVDTS-----V--------PI----EETIGEMKKLVEEGKIKYIGLS 163 (345)
Q Consensus 113 ~~ve~SL~~Lg~d~iDl~~lH~~~~~-----~--------~~----~~~~~~l~~l~~~G~ir~iGvS 163 (345)
..+++.|+....||+ +.-+|+.+.. . .. +.-.+.+.++.+.|++..||=-
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgHp 222 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAHL 222 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeCc
Confidence 345566777777877 7788975411 1 11 1235678888899988877754
No 136
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=39.76 E-value=1.8e+02 Score=25.66 Aligned_cols=43 Identities=12% Similarity=0.099 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCeeecCCCCCCCc---HHHHHHHHHh
Q 019147 36 NSPLSEEDGISIIKHAFSKGITFFDTADKYGPYT---NEILLGKALK 79 (345)
Q Consensus 36 ~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~---sE~~lG~al~ 79 (345)
|+. +.++..++++.|.+.|++-+=..++|-.|+ ++..+-+.+.
T Consensus 15 Gp~-s~eesl~ml~~A~~qGvt~iVaTsHh~~g~y~n~~~~v~~~~~ 60 (254)
T COG4464 15 GPK-SLEESLAMLREAVRQGVTKIVATSHHLHGRYENPIEKVKEKAN 60 (254)
T ss_pred CCC-cHHHHHHHHHHHHHcCceEEeecccccCCccCChHHHHHHHHH
Confidence 443 789999999999999999777666666553 4444444443
No 137
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=39.35 E-value=3.3e+02 Score=25.60 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCeeecC
Q 019147 38 PLSEEDGISIIKHAFSKGITFFDTA 62 (345)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gin~~DTA 62 (345)
..+.++..++++..-+.||..|+.+
T Consensus 20 ~f~~~~~~~ia~~Ld~aGV~~IEvg 44 (333)
T TIGR03217 20 QFTIEQVRAIAAALDEAGVDAIEVT 44 (333)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 3577889999999889999999985
No 138
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=39.29 E-value=1e+02 Score=27.12 Aligned_cols=97 Identities=20% Similarity=0.173 Sum_probs=54.6
Q ss_pred CCHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhh---cCCCcee
Q 019147 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHA---VHPITAV 182 (345)
Q Consensus 106 ~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~---~~~~~~~ 182 (345)
++.+... .+-+.|.++|+++|++- .|.......+.++.+.+.... .+..+++-...+.++..++ ...++.+
T Consensus 11 ~~~~~k~-~i~~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~i 84 (237)
T PF00682_consen 11 FSTEEKL-EIAKALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDII 84 (237)
T ss_dssp --HHHHH-HHHHHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSEE
T ss_pred cCHHHHH-HHHHHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCEE
Confidence 4455444 45566999999999987 333222233445555555555 4444555556665655433 2445555
Q ss_pred ccccCccc--c------------cccccchhHHHHhCCeE
Q 019147 183 QLEWSLWA--R------------DIENEIVPLCRELGIGI 208 (345)
Q Consensus 183 q~~~n~~~--~------------~~~~~~~~~~~~~gi~v 208 (345)
.+..+.-+ . ..-.+.+.+++++|+.+
T Consensus 85 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 85 RIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 44333322 0 01157789999999998
No 139
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=39.25 E-value=3.7e+02 Score=26.04 Aligned_cols=65 Identities=17% Similarity=0.303 Sum_probs=39.8
Q ss_pred ccCccccccccCcCCCCCCCCHHHHHHHHHHHHHCCCCeeecCCCCCCC----cHHHHHHHHHhc-----CCCCCeEEEe
Q 019147 20 EVSKLGYGCMSLSGCYNSPLSEEDGISIIKHAFSKGITFFDTADKYGPY----TNEILLGKALKE-----LPRENIQVAT 90 (345)
Q Consensus 20 ~vs~lglG~~~~g~~~~~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G----~sE~~lG~al~~-----~~R~~~~I~t 90 (345)
.|=+++.|=-+. |+.-.+..++.+++..|++.|- ...|++. .+-+.+.+++.. ...+++|+++
T Consensus 62 ~iipl~~GDPsv---~~~~~ts~~a~~Av~~al~Sgk-----~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~lts 133 (447)
T KOG0259|consen 62 PILPLGHGDPSV---YPCFRTSQEAEQAVVDALRSGK-----GNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTS 133 (447)
T ss_pred eeccCCCCCCCc---cccccCCHHHHHHHHHHHhcCC-----CCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEec
Confidence 344555553322 3332344678888888888873 4567653 366677777654 3578888876
Q ss_pred ec
Q 019147 91 KF 92 (345)
Q Consensus 91 K~ 92 (345)
-+
T Consensus 134 GC 135 (447)
T KOG0259|consen 134 GC 135 (447)
T ss_pred cc
Confidence 54
No 140
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=39.20 E-value=2.6e+02 Score=24.40 Aligned_cols=100 Identities=17% Similarity=0.168 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeeccccccCccccccCCCHHHHHHHHHHH
Q 019147 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEAS 118 (345)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~S 118 (345)
.+.++..++.+.|.+.|+.-+=..+.|- ....+.|+ ...+-|+|=+++..+. .+.+.-...+++.
T Consensus 15 ~t~~~i~~lc~~A~~~~~~avcv~p~~v-----~~a~~~l~---~~~v~v~tVigFP~G~-------~~~~~K~~E~~~A 79 (211)
T TIGR00126 15 TTEEDIITLCAQAKTYKFAAVCVNPSYV-----PLAKELLK---GTEVRICTVVGFPLGA-------STTDVKLYETKEA 79 (211)
T ss_pred CCHHHHHHHHHHHHhhCCcEEEeCHHHH-----HHHHHHcC---CCCCeEEEEeCCCCCC-------CcHHHHHHHHHHH
Confidence 4788999999999999988776655442 23344443 3468888888866532 2233334445555
Q ss_pred HhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHc
Q 019147 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEE 154 (345)
Q Consensus 119 L~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~ 154 (345)
++ +|.|-||+++-...-...+++.+.+.+.+.++.
T Consensus 80 v~-~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~ 114 (211)
T TIGR00126 80 IK-YGADEVDMVINIGALKDGNEEVVYDDIRAVVEA 114 (211)
T ss_pred HH-cCCCEEEeecchHhhhCCcHHHHHHHHHHHHHH
Confidence 54 799999998775543345566777777777764
No 141
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=39.00 E-value=1.3e+02 Score=29.49 Aligned_cols=60 Identities=22% Similarity=0.277 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHhhcCCCceeEEEe-ecCCCC----------C-CHHHH----HHHHHHHHHcCCcceEecCCCcH
Q 019147 106 GTPEYVRSCCEASLRRLDVEYIDLYYQ-HRVDTS----------V-PIEET----IGEMKKLVEEGKIKYIGLSEASP 167 (345)
Q Consensus 106 ~s~~~i~~~ve~SL~~Lg~d~iDl~~l-H~~~~~----------~-~~~~~----~~~l~~l~~~G~ir~iGvS~~~~ 167 (345)
.+.+.+.+.++..+ +|+.++|.+|.+ |.|... . +.++. ..+.+.|.+.|-.+ +|+++|..
T Consensus 216 qt~e~~~~tl~~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~~-~~~~~far 291 (453)
T PRK13347 216 QTVESFRETLDKVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYVP-IGLDHFAL 291 (453)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCEE-EeccceeC
Confidence 46788888777766 599999999866 333210 1 12222 23567788889755 99999875
No 142
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=38.99 E-value=2.2e+02 Score=27.14 Aligned_cols=28 Identities=18% Similarity=0.219 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHHHHhhcCCCceeEEEee
Q 019147 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQH 133 (345)
Q Consensus 105 ~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH 133 (345)
..+.+.+++.++..+ +|+.+++.+|.+.
T Consensus 171 gqt~~~~~~tl~~~~-~l~~~~i~~y~l~ 198 (375)
T PRK05628 171 GESDDDWRASLDAAL-EAGVDHVSAYALI 198 (375)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEeeeee
Confidence 356788888777554 5999999998876
No 143
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=38.91 E-value=1.9e+02 Score=26.88 Aligned_cols=110 Identities=13% Similarity=0.139 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeeccccccCccccccCCCHHHHHHHHHHHHhh
Q 019147 42 EDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRR 121 (345)
Q Consensus 42 ~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~ 121 (345)
+.-+++|+...+.|+ .+|+|+. |++.+-++++- . ...+|+|-.....-.+ ...+.+-+.++ ++.+.=--
T Consensus 154 ~~G~~vv~~mn~lGm-iiDvSH~-----s~~~~~dv~~~-s-~~PviaSHsn~ral~~--h~RNltD~~i~-~ia~~GGv 222 (309)
T cd01301 154 PFGKELVREMNRLGI-IIDLSHL-----SERTFWDVLDI-S-NAPVIASHSNARALCD--HPRNLTDAQLK-AIAETGGV 222 (309)
T ss_pred HHHHHHHHHHHHcCC-EEEcCCC-----CHHHHHHHHHh-c-CCCEEEeccChHHhcC--CCCCCCHHHHH-HHHHcCCE
Confidence 457899999999998 9999986 78888888874 2 3457777765432110 01123333332 22222111
Q ss_pred cCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCC
Q 019147 122 LDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE 164 (345)
Q Consensus 122 Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~ 164 (345)
.|+.+...++ . .+....++++++.++.+++.+=+.+||+.+
T Consensus 223 igi~~~~~fl-~-~~~~~~~~~~~~hi~~i~~l~G~dhVgiGs 263 (309)
T cd01301 223 IGVNFYPAFL-S-PGADATLDDVVRHIDYIVDLIGIDHVGLGS 263 (309)
T ss_pred EEEeeeHHHh-C-CCCCCCHHHHHHHHHHHHHhcCCCeEEECc
Confidence 2222211111 1 123456888999999999887799999976
No 144
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=38.90 E-value=1.7e+02 Score=27.06 Aligned_cols=73 Identities=11% Similarity=0.012 Sum_probs=49.3
Q ss_pred HHHHHHHHcCCcc-eEecCCCcHHHHHHHhhcCCCceeccccCccccc-ccccchhHHHHhCCeEEeecCCCCcc
Q 019147 146 GEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARD-IENEIVPLCRELGIGIVPYCPLGRGF 218 (345)
Q Consensus 146 ~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~v~a~spl~~G~ 218 (345)
+.+..+.++-.+. +.|=|-++.+.+..+++....+++|+....+-.- .-.++.+.|+.+||.++..+.+..|+
T Consensus 196 ~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es~i 270 (307)
T TIGR01927 196 DEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESSI 270 (307)
T ss_pred HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccchHH
Confidence 4555565553322 4455667888888888777778888876653211 12588999999999999877776554
No 145
>PHA02128 hypothetical protein
Probab=38.86 E-value=61 Score=24.93 Aligned_cols=70 Identities=14% Similarity=0.209 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhhc------------------CCCceec---cccCcccccccccchhH
Q 019147 142 EETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV------------------HPITAVQ---LEWSLWARDIENEIVPL 200 (345)
Q Consensus 142 ~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~------------------~~~~~~q---~~~n~~~~~~~~~~~~~ 200 (345)
..++..-.++..+|-+|-|-+...+..+++.+... +.+.+.+ .+|.+-.+...+++.++
T Consensus 60 ~gl~~lane~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rqeiydw 139 (151)
T PHA02128 60 TGLLHLANEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQEIYDW 139 (151)
T ss_pred chHHHHHHHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHHHHHhh
Confidence 34677777888999999888876665555443221 1222333 36666666656899999
Q ss_pred HHHhCCeEEee
Q 019147 201 CRELGIGIVPY 211 (345)
Q Consensus 201 ~~~~gi~v~a~ 211 (345)
+-.|||.++.+
T Consensus 140 agthgvefvim 150 (151)
T PHA02128 140 AGTHGVEFVIM 150 (151)
T ss_pred cccCceEEEEe
Confidence 99999998764
No 146
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=38.83 E-value=2.5e+02 Score=24.58 Aligned_cols=21 Identities=19% Similarity=0.542 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHCCCCeeec
Q 019147 41 EEDGISIIKHAFSKGITFFDT 61 (345)
Q Consensus 41 ~~~~~~~l~~A~~~Gin~~DT 61 (345)
++.....++.|++.|+..|.+
T Consensus 14 pENTl~Af~~A~~~G~d~iE~ 34 (237)
T cd08583 14 YTNSLDAFEHNYKKGYRVFEV 34 (237)
T ss_pred CccHHHHHHHHHHhCCCEEEE
Confidence 466788889999999997764
No 147
>COG0282 ackA Acetate kinase [Energy production and conversion]
Probab=38.57 E-value=2e+02 Score=27.67 Aligned_cols=120 Identities=14% Similarity=0.156 Sum_probs=69.4
Q ss_pred HHHHHHHcCCcceEecCCCcHH----HHHHHhhcCCCceeccccCcccccccccchhHHHHhCCeE---EeecCCCCccc
Q 019147 147 EMKKLVEEGKIKYIGLSEASPD----TIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRELGIGI---VPYCPLGRGFF 219 (345)
Q Consensus 147 ~l~~l~~~G~ir~iGvS~~~~~----~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v---~a~spl~~G~L 219 (345)
-=.++.++-.||.+|+-..+-. ...+.+...--+.+.+-+++-+.. . =.|-++|-.| +.++||. |+.
T Consensus 162 lP~~~y~~~gIRrYGFHGtSh~YVs~~aa~~L~k~~~~l~~I~~HLGNGA---S--icAiknGkSvDTSMGfTPLe-Gl~ 235 (396)
T COG0282 162 LPYELYEKYGIRRYGFHGTSHKYVSQRAAEILGKPLEDLNLITCHLGNGA---S--ICAIKNGKSVDTSMGFTPLE-GLM 235 (396)
T ss_pred CCHHHHHhcCceecccCccchHHHHHHHHHHhCCCccccCEEEEEecCch---h--hhhhhCCeeeccCCCCCccc-cee
Confidence 3457888889999999876644 344444433236677777765542 1 1234555544 5688997 777
Q ss_pred CCCCccCCCCCccccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCCeEecCCCCC-HHhHHHhh
Q 019147 220 GGKAVVESVPLDSFLKFFPRFNGENLDRNKSIYFRIENLAKKYKCTSAQLALAWVLAQGEDVVPIPGTTK-IKNLDDNI 297 (345)
Q Consensus 220 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~~q~al~~~l~~~~v~~vi~g~~~-~~~l~enl 297 (345)
-|.++.+- .| ..+.-++++.|+|+.|+.- .|++..--.=|.|-++ ...++++.
T Consensus 236 MGTRsGdi---------DP--------------~ii~~l~~~~~~s~~~i~~--~LNkkSGllGlSg~ssD~R~l~~~~ 289 (396)
T COG0282 236 MGTRSGDI---------DP--------------GIILYLMEQEGMSAEEIDT--LLNKKSGLLGLSGLSSDMRDLEEAA 289 (396)
T ss_pred ccCCCCCC---------Ch--------------HHHHHHHHhcCCCHHHHHH--HHhhhccccccccccchHHHHHHHh
Confidence 66543321 11 1677788889999999653 4443321133455333 45554444
No 148
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=38.19 E-value=2.4e+02 Score=24.10 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHHC-CCCeeecCCCCCCCcHHHHHHHHHhcCCC--CCeEEEeeccccccCccccccCCCHHHH
Q 019147 35 YNSPLSEEDGISIIKHAFSK-GITFFDTADKYGPYTNEILLGKALKELPR--ENIQVATKFGFVELGFTSVIVKGTPEYV 111 (345)
Q Consensus 35 ~~~~~~~~~~~~~l~~A~~~-Gin~~DTA~~Yg~G~sE~~lG~al~~~~R--~~~~I~tK~~~~~~~~~~~~~~~s~~~i 111 (345)
+|-. +.+++..+++.-.+. |+++.+.++-|= +.....+..+..++ ..+-+...-.
T Consensus 4 CGi~-~~ed~~~a~~~Gvd~ig~i~~~~s~R~v---~~~~a~~l~~~~~~~~~~V~v~vn~~------------------ 61 (203)
T cd00405 4 CGIT-TLEDALAAAEAGADAIGFIFAPKSPRYV---SPEQAREIVAALPPFVKRVGVFVNED------------------ 61 (203)
T ss_pred CCCC-CHHHHHHHHHcCCCEEEEecCCCCCCCC---CHHHHHHHHHhCCCCCcEEEEEeCCC------------------
Q ss_pred HHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHH
Q 019147 112 RSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRA 173 (345)
Q Consensus 112 ~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~ 173 (345)
...+.+....++ +|.++||..++ .+..+.+.+......++.+|+++....++...
T Consensus 62 ~~~i~~ia~~~~---~d~Vqlhg~e~----~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~ 116 (203)
T cd00405 62 LEEILEIAEELG---LDVVQLHGDES----PEYCAQLRARLGLPVIKAIRVKDEEDLEKAAA 116 (203)
T ss_pred HHHHHHHHHhcC---CCEEEECCCCC----HHHHHHHHhhcCCcEEEEEecCChhhHHHhhh
No 149
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=38.07 E-value=2.9e+02 Score=24.61 Aligned_cols=145 Identities=17% Similarity=0.196 Sum_probs=81.2
Q ss_pred HHHHHCCCCeeecCC-CCCC-C-cHHHHHHHHHhcCCCCCeEEEeeccccccCccccccCCCHHHHHHHHHHHHhhcCCC
Q 019147 49 KHAFSKGITFFDTAD-KYGP-Y-TNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVE 125 (345)
Q Consensus 49 ~~A~~~Gin~~DTA~-~Yg~-G-~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~Lg~d 125 (345)
..|++.|...||.=+ .-|. | ....++.+. .+......-||..+|-.. +.|..+..+....- .-|+|
T Consensus 14 ~~a~~~gaDiID~K~P~~GaLGA~~~~vi~~i-~~~~~~~~pvSAtiGDlp---------~~p~~~~~aa~~~a-~~Gvd 82 (235)
T PF04476_consen 14 EEALAGGADIIDLKNPAEGALGALFPWVIREI-VAAVPGRKPVSATIGDLP---------MKPGTASLAALGAA-ATGVD 82 (235)
T ss_pred HHHHhCCCCEEEccCCCCCCCCCCCHHHHHHH-HHHcCCCCceEEEecCCC---------CCchHHHHHHHHHH-hcCCC
Confidence 457889999999742 2221 2 233444433 332344467888887443 23555655555544 34888
Q ss_pred ceeEEEeecCCCCCCHHHHHHHHH-------HHHHcCCcceEecCCC------cHHHHHHHhhcCCCceeccccC-----
Q 019147 126 YIDLYYQHRVDTSVPIEETIGEMK-------KLVEEGKIKYIGLSEA------SPDTIRRAHAVHPITAVQLEWS----- 187 (345)
Q Consensus 126 ~iDl~~lH~~~~~~~~~~~~~~l~-------~l~~~G~ir~iGvS~~------~~~~l~~~~~~~~~~~~q~~~n----- 187 (345)
||=+=+.-..+ .++..+.|+ +...+-++-+.+.+.+ ++..+.++.....++.+|+.--
T Consensus 83 yvKvGl~g~~~----~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa~Kdg~ 158 (235)
T PF04476_consen 83 YVKVGLFGCKD----YDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDTADKDGG 158 (235)
T ss_pred EEEEecCCCCC----HHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEecccCCCC
Confidence 88876653222 333333333 2223456778888876 3455656665566777776432
Q ss_pred -cccccc---cccchhHHHHhCCeE
Q 019147 188 -LWARDI---ENEIVPLCRELGIGI 208 (345)
Q Consensus 188 -~~~~~~---~~~~~~~~~~~gi~v 208 (345)
+++.-. ..+.++.|+++|+-+
T Consensus 159 ~L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 159 SLFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred chhhcCCHHHHHHHHHHHHHccchh
Confidence 222211 146778888888764
No 150
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=38.05 E-value=1.1e+02 Score=25.41 Aligned_cols=73 Identities=16% Similarity=0.155 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeec-cccccCccccccCCCHHHHHHHHHHH
Q 019147 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKF-GFVELGFTSVIVKGTPEYVRSCCEAS 118 (345)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~-~~~~~~~~~~~~~~s~~~i~~~ve~S 118 (345)
+++...-.+++|-++||.+|=.|..||. +-.-+-+.+.. . =++++.|-- |.... ....+...+++-
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~--tA~k~lemveg-~-lkvVvVthh~Gf~e~---------g~~e~~~E~~~~ 78 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGY--TALKALEMVEG-D-LKVVVVTHHAGFEEK---------GTQEMDEEVRKE 78 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccH--HHHHHHHhccc-C-ceEEEEEeecccccC---------CceecCHHHHHH
Confidence 5566777889999999999999999985 33333333322 2 235555543 32221 123456667888
Q ss_pred HhhcCCC
Q 019147 119 LRRLDVE 125 (345)
Q Consensus 119 L~~Lg~d 125 (345)
|+..|.+
T Consensus 79 L~erGa~ 85 (186)
T COG1751 79 LKERGAK 85 (186)
T ss_pred HHHcCce
Confidence 8888843
No 151
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=37.72 E-value=1.9e+02 Score=25.11 Aligned_cols=90 Identities=16% Similarity=0.196 Sum_probs=54.1
Q ss_pred HhhcCCCceeEEEee-cCCCC-CC----HHHHHHHHHHHHH--cCCcceEecCCCcHHHHHHHhhcCCCceeccccCccc
Q 019147 119 LRRLDVEYIDLYYQH-RVDTS-VP----IEETIGEMKKLVE--EGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWA 190 (345)
Q Consensus 119 L~~Lg~d~iDl~~lH-~~~~~-~~----~~~~~~~l~~l~~--~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~ 190 (345)
+..-|.++||+=--- +|... .+ ++.+...++.+++ .+. -|.+-++.++.++.+++. ..+++-...+.-
T Consensus 28 ~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~-g~~~ind~~~~~- 103 (210)
T PF00809_consen 28 QVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKA-GADIINDISGFE- 103 (210)
T ss_dssp HHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHH-TSSEEEETTTTS-
T ss_pred HHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHc-CcceEEeccccc-
Confidence 344588999974221 22211 12 2234555666665 233 477788999999999887 444332222211
Q ss_pred ccccccchhHHHHhCCeEEeecCC
Q 019147 191 RDIENEIVPLCRELGIGIVPYCPL 214 (345)
Q Consensus 191 ~~~~~~~~~~~~~~gi~v~a~spl 214 (345)
. ..++++.++++|..++++.--
T Consensus 104 ~--~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 104 D--DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp S--STTHHHHHHHHTSEEEEESES
T ss_pred c--cchhhhhhhcCCCEEEEEecc
Confidence 1 368999999999999986444
No 152
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=37.41 E-value=3.1e+02 Score=24.76 Aligned_cols=29 Identities=10% Similarity=0.094 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHHCCCCeeecCCCCCC
Q 019147 39 LSEEDGISIIKHAFSKGITFFDTADKYGP 67 (345)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~ 67 (345)
+|.+...+.++..++.|++-+=..-..|.
T Consensus 18 iD~~~~~~~i~~l~~~Gv~gl~v~GstGE 46 (284)
T cd00950 18 VDFDALERLIEFQIENGTDGLVVCGTTGE 46 (284)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCcc
Confidence 58888999999999999998775555544
No 153
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=37.26 E-value=2.8e+02 Score=25.12 Aligned_cols=78 Identities=15% Similarity=0.096 Sum_probs=51.4
Q ss_pred CHH-HHHHHHHHHHHCCCCeeecCCCCCC-CcHH---HHHHHHHhcC-CCCCeEEEeeccccccCccccccCCCHHHHHH
Q 019147 40 SEE-DGISIIKHAFSKGITFFDTADKYGP-YTNE---ILLGKALKEL-PRENIQVATKFGFVELGFTSVIVKGTPEYVRS 113 (345)
Q Consensus 40 ~~~-~~~~~l~~A~~~Gin~~DTA~~Yg~-G~sE---~~lG~al~~~-~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~ 113 (345)
+.+ +...+.+.|.+.|..|+=|+..|+. |.+. +++-+++++. ...+ +--|.... =.+.+....
T Consensus 144 ~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~~~~--vgIKAsGG---------Irt~~~A~~ 212 (257)
T PRK05283 144 KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVAKT--VGFKPAGG---------VRTAEDAAQ 212 (257)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcccCCC--eeEEccCC---------CCCHHHHHH
Confidence 334 5888999999999999999999974 4332 3333444321 0122 33343211 125788888
Q ss_pred HHHHHHhhcCCCcee
Q 019147 114 CCEASLRRLDVEYID 128 (345)
Q Consensus 114 ~ve~SL~~Lg~d~iD 128 (345)
-++.--+.||.+|++
T Consensus 213 ~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 213 YLALADEILGADWAD 227 (257)
T ss_pred HHHHHHHHhChhhcC
Confidence 899999999988876
No 154
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=36.86 E-value=1.5e+02 Score=24.97 Aligned_cols=99 Identities=11% Similarity=0.042 Sum_probs=64.3
Q ss_pred HCCCCeeecCCCCC-------CCcHHHHHHHHHhcCCCCCeEEEeeccccccCccc--cccCCCHHHHHHHHHHHHhhcC
Q 019147 53 SKGITFFDTADKYG-------PYTNEILLGKALKELPRENIQVATKFGFVELGFTS--VIVKGTPEYVRSCCEASLRRLD 123 (345)
Q Consensus 53 ~~Gin~~DTA~~Yg-------~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~--~~~~~s~~~i~~~ve~SL~~Lg 123 (345)
..+|-++||-..-. .|+.+..+-..|.+ .|-++.|.++---.+..++. ....-++....+-+++.|++-+
T Consensus 78 a~~v~fiDTD~itT~~~~~~y~gr~~P~~~~~i~~-~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L~~~~ 156 (187)
T COG3172 78 ANKVAFIDTDFLTTQAFCKKYEGREHPFLQALIAE-YRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQMLEENN 156 (187)
T ss_pred CCceEEEeccHHHHHHHHHHHcccCCchHHHHHhh-cccceEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHHHHhC
Confidence 46999999854221 13345566666665 67788877764433322221 1222367788888999999998
Q ss_pred CCceeEEEeecCCCCCCHHHHHHHHHHHHHcC
Q 019147 124 VEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG 155 (345)
Q Consensus 124 ~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G 155 (345)
..|+ -|..++........+++.++|..++
T Consensus 157 ~~~v---~i~~~~y~eR~~~~~~aV~ell~~~ 185 (187)
T COG3172 157 IPFV---VIEGEDYLERYLQAVEAVEELLGEK 185 (187)
T ss_pred CcEE---EEcCCCHHHHHHHHHHHHHHHHhcc
Confidence 6664 4566665566677888999888776
No 155
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=36.65 E-value=3.7e+02 Score=25.60 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCeeecCC
Q 019147 38 PLSEEDGISIIKHAFSKGITFFDTAD 63 (345)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gin~~DTA~ 63 (345)
..+.++..++++...+.||..|+...
T Consensus 18 ~~s~~~k~~ia~~L~~~Gv~~IEvG~ 43 (363)
T TIGR02090 18 SLTVEQKVEIARKLDELGVDVIEAGF 43 (363)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 34778889999999999999999753
No 156
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=36.64 E-value=26 Score=31.47 Aligned_cols=98 Identities=17% Similarity=0.153 Sum_probs=53.4
Q ss_pred HHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHc-CCcceEecC-------CCcHHHHHHHhhcCCCceec
Q 019147 112 RSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEE-GKIKYIGLS-------EASPDTIRRAHAVHPITAVQ 183 (345)
Q Consensus 112 ~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~-G~ir~iGvS-------~~~~~~l~~~~~~~~~~~~q 183 (345)
.+.++..|+-.| +|||++=+-|-......+++++..-++.++ |---+.|=. .-..+++.+.++...|+++.
T Consensus 24 ~~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IE 102 (244)
T PF02679_consen 24 LRYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIE 102 (244)
T ss_dssp HHHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEE
T ss_pred HHHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEE
Confidence 456788888888 999999999876654444455544444433 333333311 12234444445556777777
Q ss_pred cccCccccccc--ccchhHHHHhCCeEEe
Q 019147 184 LEWSLWARDIE--NEIVPLCRELGIGIVP 210 (345)
Q Consensus 184 ~~~n~~~~~~~--~~~~~~~~~~gi~v~a 210 (345)
+.=..+.-..+ ..++..+++.|..|++
T Consensus 103 iSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 103 ISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp E--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred ecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 76555443322 4778888888888775
No 157
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=36.24 E-value=3.1e+02 Score=27.50 Aligned_cols=101 Identities=10% Similarity=0.064 Sum_probs=57.1
Q ss_pred HHHHHHHHHhc----CCCCCeEEEeeccccccCccccccCCCHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCH-HHH
Q 019147 70 NEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPI-EET 144 (345)
Q Consensus 70 sE~~lG~al~~----~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~-~~~ 144 (345)
+++.|-+++++ .+.+-++|.|-+. ++-|-..++...+.++.+.++++.++.+...... ...
T Consensus 69 ~~~~L~~aI~~~~~~~~P~~I~V~sTC~--------------selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~ 134 (511)
T TIGR01278 69 SQTRLVDTVRRVDDRFKPDLIVVTPSCT--------------SSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAA 134 (511)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEeCCCh--------------HHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHH
Confidence 56777777766 2334456666553 2333333444445555445889999988765432 122
Q ss_pred HHHHHHHH--------------HcCCcceEecCCC------cHHHHHHHhhcCCCceecc
Q 019147 145 IGEMKKLV--------------EEGKIKYIGLSEA------SPDTIRRAHAVHPITAVQL 184 (345)
Q Consensus 145 ~~~l~~l~--------------~~G~ir~iGvS~~------~~~~l~~~~~~~~~~~~q~ 184 (345)
-.+|+.++ +++.|--||.++. +...++++++...+.++.+
T Consensus 135 ~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v 194 (511)
T TIGR01278 135 DRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVV 194 (511)
T ss_pred HHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 22222222 2456888898762 3456777777766666543
No 158
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=35.90 E-value=54 Score=32.52 Aligned_cols=126 Identities=19% Similarity=0.180 Sum_probs=72.7
Q ss_pred HHHHHHHCCCCeee--cCCCCCC--------CcHHHHHHHHHhc---CCCCCeEEEeeccccccCcc---------cccc
Q 019147 47 IIKHAFSKGITFFD--TADKYGP--------YTNEILLGKALKE---LPRENIQVATKFGFVELGFT---------SVIV 104 (345)
Q Consensus 47 ~l~~A~~~Gin~~D--TA~~Yg~--------G~sE~~lG~al~~---~~R~~~~I~tK~~~~~~~~~---------~~~~ 104 (345)
-.....+.|+..+- ||-.|-- |.-|.++.-+-+. ..+-++||++-+|......+ ....
T Consensus 107 ~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l~v 186 (546)
T PF01175_consen 107 HFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGGDLAGKLFLTAGLGGMGGAQPLAATMAGGVGLIV 186 (546)
T ss_dssp HHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTTS-TT-EEEEE--STTCCHHHHHHHHTT-EEEEE
T ss_pred HHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCCCCcceEEEEecccccccchHHHHHhcCceEEEE
Confidence 35666778887654 5554421 4555555433222 46788999999887654210 1122
Q ss_pred CCCHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhhcC---CCce
Q 019147 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH---PITA 181 (345)
Q Consensus 105 ~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~---~~~~ 181 (345)
+.+++.|+ +|+.+.|+|.+- .+++++++..++.+++|+..+||+-..-++.++++++.. .+..
T Consensus 187 Evd~~ri~-------kR~~~g~ld~~~-------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~t 252 (546)
T PF01175_consen 187 EVDPSRIE-------KRLEQGYLDEVT-------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDLVT 252 (546)
T ss_dssp ES-HHHHH-------HHHHTTSSSEEE-------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SEE-
T ss_pred EECHHHHH-------HHHhCCCeeEEc-------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCccc
Confidence 34455554 577788998642 458999999999999999999999998889898887762 2334
Q ss_pred ecccc
Q 019147 182 VQLEW 186 (345)
Q Consensus 182 ~q~~~ 186 (345)
-|...
T Consensus 253 DQTS~ 257 (546)
T PF01175_consen 253 DQTSA 257 (546)
T ss_dssp --SST
T ss_pred CCCcc
Confidence 45543
No 159
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=35.80 E-value=1.6e+02 Score=28.97 Aligned_cols=86 Identities=8% Similarity=0.070 Sum_probs=55.8
Q ss_pred EEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhhcCCCceeccccCcccccccccchhHHHHhCCe
Q 019147 129 LYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRELGIG 207 (345)
Q Consensus 129 l~~lH~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~ 207 (345)
+.++--|-+..+..+-++.+.+|++...|. +.|-+.++..++..+++..-++++|......--..-.++.+.|+.+|+.
T Consensus 252 ~~~iEePv~~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~d~~~gGIt~~~kIa~lA~a~Gi~ 331 (441)
T TIGR03247 252 LAYAEDPCGAEQGYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPLADPHFWTMQGSVRVAQMCHDWGLT 331 (441)
T ss_pred hceEeCCCCcccccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEeccCCcchHHHHHHHHHHHHHcCCE
Confidence 445665543322111267777887765554 3455668888999988888888888875321111125889999999999
Q ss_pred EEeecCC
Q 019147 208 IVPYCPL 214 (345)
Q Consensus 208 v~a~spl 214 (345)
+..++..
T Consensus 332 v~~h~~~ 338 (441)
T TIGR03247 332 WGSHSNN 338 (441)
T ss_pred EEEeCCc
Confidence 8876644
No 160
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=35.78 E-value=6.8e+02 Score=28.16 Aligned_cols=122 Identities=15% Similarity=0.073 Sum_probs=69.0
Q ss_pred hhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHH-cCCc--ceEecCCCcHHHHHHHhhcCCCceeccccCccc--cccc
Q 019147 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVE-EGKI--KYIGLSEASPDTIRRAHAVHPITAVQLEWSLWA--RDIE 194 (345)
Q Consensus 120 ~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~-~G~i--r~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~--~~~~ 194 (345)
-.-|-+.||+=.= ....+-++.++.+..+.+ +-.+ --|-+-++.++.++.+++..+=..+-...|... .. .
T Consensus 378 ve~GA~iIDVn~~---~~~vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaLk~~~G~~IINsIs~~~g~~~-~ 453 (1178)
T TIGR02082 378 VENGAQILDINVD---YGMLDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVLEAGLKCIQGKCIVNSISLKDGEER-F 453 (1178)
T ss_pred HHCCCCEEEECCC---CCCCCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHHHHHHHhcCCCCEEEeCCCCCCCcc-H
Confidence 3568899998532 111233444444444443 3212 236677899999999998732122333444432 11 1
Q ss_pred ccchhHHHHhCCeEEeecCCCCcccCCCCccCCCCCccccccCCCCCCcchhhhHHHHHHHHHHHHH-cCCCHHH
Q 019147 195 NEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLKFFPRFNGENLDRNKSIYFRIENLAKK-YKCTSAQ 268 (345)
Q Consensus 195 ~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~-~g~s~~q 268 (345)
.++++.|+++|..++.+.-=..|. +...+...+.++++-+.+.+ +|+++..
T Consensus 454 ~~~~~l~~~yga~vV~m~~de~G~-----------------------p~t~e~r~~i~~~~~~~~~~~~Gi~~ed 505 (1178)
T TIGR02082 454 IETAKLIKEYGAAVVVMAFDEEGQ-----------------------ARTADRKIEICKRAYNILTEKVGFPPED 505 (1178)
T ss_pred HHHHHHHHHhCCCEEEEecCCCCC-----------------------CCCHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 379999999999999865322332 11223445566666666665 8876544
No 161
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=35.71 E-value=1.7e+02 Score=31.62 Aligned_cols=71 Identities=15% Similarity=0.081 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHhhcC--------------------------CCceeEEEeecCCCCCCH---HHHHHHHHHHHHcCC
Q 019147 106 GTPEYVRSCCEASLRRLD--------------------------VEYIDLYYQHRVDTSVPI---EETIGEMKKLVEEGK 156 (345)
Q Consensus 106 ~s~~~i~~~ve~SL~~Lg--------------------------~d~iDl~~lH~~~~~~~~---~~~~~~l~~l~~~G~ 156 (345)
..+.++.+.++..|+.++ +....+++|..|..-.+. ..+|+.+.++++.|+
T Consensus 670 ~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~ 749 (885)
T KOG0059|consen 670 LPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGK 749 (885)
T ss_pred CChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 456789999999999887 345678888888654433 579999999999999
Q ss_pred cceEecCCCcHHHHHHHhhcCC
Q 019147 157 IKYIGLSEASPDTIRRAHAVHP 178 (345)
Q Consensus 157 ir~iGvS~~~~~~l~~~~~~~~ 178 (345)
+|=+.+|+-++.+.++....
T Consensus 750 --aiiLTSHsMeE~EaLCtR~a 769 (885)
T KOG0059|consen 750 --AIILTSHSMEEAEALCTRTA 769 (885)
T ss_pred --EEEEEcCCHHHHHHHhhhhh
Confidence 89999999998888776633
No 162
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=35.51 E-value=1.2e+02 Score=27.85 Aligned_cols=115 Identities=15% Similarity=0.188 Sum_probs=67.8
Q ss_pred HHHHHHHHcCCcceEecCCCcHHHHHHHhhc----CCCceeccccCcccc---cccccchhHHHHhCCeEEeecCCCCcc
Q 019147 146 GEMKKLVEEGKIKYIGLSEASPDTIRRAHAV----HPITAVQLEWSLWAR---DIENEIVPLCRELGIGIVPYCPLGRGF 218 (345)
Q Consensus 146 ~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~----~~~~~~q~~~n~~~~---~~~~~~~~~~~~~gi~v~a~spl~~G~ 218 (345)
+.++.|....++..+--.+.+.+.+.++.+. .+..-..+ +|-+.. ..+..+.+++++-++-++. +|.
T Consensus 145 ~d~~~l~~~~~v~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~-~nTIC~AT~~RQ~a~~~la~~vD~miVV-----Gg~ 218 (280)
T TIGR00216 145 EDLENFKVEDLLGVVSQTTLSQEDTKEIVAELKARVPQKEVPV-FNTICYATQNRQDAVKELAPEVDLMIVI-----GGK 218 (280)
T ss_pred HHHHhCCCCCcEEEEEcCCCcHHHHHHHHHHHHHhCCCcCCCC-CCCcccccHHHHHHHHHHHhhCCEEEEE-----CCC
Confidence 3444444345555555566777666554433 21011111 222221 1235778888887776665 232
Q ss_pred cCCCCccCCCCCccccccCCCCCCcchhhhHHHHHHHHHHHHHcCC------CHHHHHHHHHHhcCCCeEecCCCCCHHh
Q 019147 219 FGGKAVVESVPLDSFLKFFPRFNGENLDRNKSIYFRIENLAKKYKC------TSAQLALAWVLAQGEDVVPIPGTTKIKN 292 (345)
Q Consensus 219 L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~------s~~q~al~~~l~~~~v~~vi~g~~~~~~ 292 (345)
=+.+ -.+|.++|+++|. ++.++-..|+-.... ..+..|+|+|+.
T Consensus 219 nSsN-----------------------------T~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~-VGiTAGASTP~~ 268 (280)
T TIGR00216 219 NSSN-----------------------------TTRLYEIAEEHGPPSYLIETAEELPEEWLKGVKV-VGITAGASTPDW 268 (280)
T ss_pred CCch-----------------------------HHHHHHHHHHhCCCEEEECChHHCCHHHhCCCCE-EEEEecCCCCHH
Confidence 1110 1378999999874 689999999987654 577899999998
Q ss_pred HHHh
Q 019147 293 LDDN 296 (345)
Q Consensus 293 l~en 296 (345)
+-+.
T Consensus 269 li~e 272 (280)
T TIGR00216 269 IIEE 272 (280)
T ss_pred HHHH
Confidence 7654
No 163
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=35.49 E-value=61 Score=31.69 Aligned_cols=101 Identities=14% Similarity=0.120 Sum_probs=69.0
Q ss_pred CcHHHHHHHHHhc---CCCCCeEEEeeccccccCcc-------c--cccCCCHHHHHHHHHHHHhhcCCCceeEEEeecC
Q 019147 68 YTNEILLGKALKE---LPRENIQVATKFGFVELGFT-------S--VIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRV 135 (345)
Q Consensus 68 G~sE~~lG~al~~---~~R~~~~I~tK~~~~~~~~~-------~--~~~~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~ 135 (345)
|.=|.++..+-+. ..+-+++++.-+|......+ . ...+.+.+.| -+||.+.|+|.
T Consensus 148 GTyeT~~~~~r~h~~gdL~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI-------~~Rl~t~y~d~------ 214 (561)
T COG2987 148 GTYETFAEAGRQHFGGDLKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRI-------DKRLRTGYLDE------ 214 (561)
T ss_pred chHHHHHHHHHHhcCCCccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHH-------HHHHhcchhhh------
Confidence 5566666554443 36778999888886654311 0 0112223333 35778899885
Q ss_pred CCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhhc-CCCcee
Q 019147 136 DTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV-HPITAV 182 (345)
Q Consensus 136 ~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~ 182 (345)
....++|.++..++..++|+-.+||+-..-++.+.++++. ..||++
T Consensus 215 -~a~~ldeAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~v 261 (561)
T COG2987 215 -IAETLDEALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLV 261 (561)
T ss_pred -hcCCHHHHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCcee
Confidence 2346899999999999999999999999999999998887 344443
No 164
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=35.02 E-value=2.1e+02 Score=26.51 Aligned_cols=146 Identities=14% Similarity=0.112 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHhhcCCCceeEEEeecCCCC----CCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHH--HhhcCCCce
Q 019147 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTS----VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRR--AHAVHPITA 181 (345)
Q Consensus 108 ~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~----~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~--~~~~~~~~~ 181 (345)
.+.+++.|.+-+++.++|++=++.+-+-... ....+++++|++..+++.-. + ++..+-. ++. .+..+
T Consensus 131 ~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~-~-----~aS~~YA~AAl~-~g~~f 203 (295)
T PF07994_consen 131 VEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPE-I-----SASMLYAYAALE-AGVPF 203 (295)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT-H-----HHHHHHHHHHHH-TTEEE
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc-C-----ChHHHHHHHHHH-CCCCe
Confidence 5678899999999999886655555433321 12335789999888876633 2 2332211 122 23222
Q ss_pred -eccccCcccccccccchhHHHHhCCeEEeecCCCCcccCCCCccCCCCCccccccCCCCCCcchhhhHHHHHHHHHHHH
Q 019147 182 -VQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLKFFPRFNGENLDRNKSIYFRIENLAK 260 (345)
Q Consensus 182 -~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~ 260 (345)
|=.+-+..+ ...+.+.++++|+.+..- . +.........--+-++.++|.
T Consensus 204 vN~tP~~~a~---~P~l~ela~~~gvpi~Gd-----D----------------------~KT~lAAplvlDLirl~~la~ 253 (295)
T PF07994_consen 204 VNGTPSNIAD---DPALVELAEEKGVPIAGD-----D----------------------GKTPLAAPLVLDLIRLAKLAL 253 (295)
T ss_dssp EE-SSSTTTT---SHHHHHHHHHHTEEEEES-----S----------------------BS-HHHHHHHHHHHHHHHHHH
T ss_pred EeccCccccC---CHHHHHHHHHcCCCeecc-----h----------------------HhhhhhhHHHHHHHHHHHHHH
Confidence 222222222 247899999999998741 0 001112233444558889999
Q ss_pred HcCCCHHHHHHHHHHhcCCCeEecCCCCCHHhH
Q 019147 261 KYKCTSAQLALAWVLAQGEDVVPIPGTTKIKNL 293 (345)
Q Consensus 261 ~~g~s~~q~al~~~l~~~~v~~vi~g~~~~~~l 293 (345)
+.|....+-.++|.+..|. +=+|......+
T Consensus 254 r~g~~Gv~~~ls~ffK~P~---~~~g~~~~~~l 283 (295)
T PF07994_consen 254 RRGMGGVQEWLSFFFKSPM---VPPGPPQEHDL 283 (295)
T ss_dssp HTTS-EEHHHHHHHBSS-T-----TTSTT--HH
T ss_pred HcCCCChhHHHHHHhcCCC---ccCCCCCCCcH
Confidence 9999889999999999986 22555555544
No 165
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=34.66 E-value=1.9e+02 Score=25.59 Aligned_cols=70 Identities=13% Similarity=0.113 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHHHhhcCC-C-------------------------ceeEEEeecCCCCCCH---HHHHHHHHHHHHcC
Q 019147 105 KGTPEYVRSCCEASLRRLDV-E-------------------------YIDLYYQHRVDTSVPI---EETIGEMKKLVEEG 155 (345)
Q Consensus 105 ~~s~~~i~~~ve~SL~~Lg~-d-------------------------~iDl~~lH~~~~~~~~---~~~~~~l~~l~~~G 155 (345)
+.+...+++.+++.-++|+. + ..+++.+.-|..-.++ ....+.+.+++.+|
T Consensus 104 ~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~eg 183 (245)
T COG4555 104 GLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEG 183 (245)
T ss_pred hhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCC
Confidence 45667778888888888873 2 2344444444332232 46788899999999
Q ss_pred CcceEecCCCcHHHHHHHhhc
Q 019147 156 KIKYIGLSEASPDTIRRAHAV 176 (345)
Q Consensus 156 ~ir~iGvS~~~~~~l~~~~~~ 176 (345)
+ .+=+|+|..+.++++++.
T Consensus 184 r--~viFSSH~m~EvealCDr 202 (245)
T COG4555 184 R--AVIFSSHIMQEVEALCDR 202 (245)
T ss_pred c--EEEEecccHHHHHHhhhe
Confidence 8 788899999999887764
No 166
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=34.59 E-value=1.1e+02 Score=28.84 Aligned_cols=85 Identities=16% Similarity=0.080 Sum_probs=56.9
Q ss_pred eeEEEeecCCCCCCHHHHHHHHHHHHHcCCc-ceEecCCCcHHHHHHHhhcCCCceeccccCccccc-ccccchhHHHHh
Q 019147 127 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKI-KYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARD-IENEIVPLCREL 204 (345)
Q Consensus 127 iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~ 204 (345)
.++.++--|-.. +-++.+.+|+++-.+ -+.|=|.++.+.+..+++...++++|+..+.+-.- .-.++...|+.+
T Consensus 203 ~~i~~iEeP~~~----~d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~A~~~ 278 (354)
T cd03317 203 YGLLMIEQPLAA----DDLIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEH 278 (354)
T ss_pred CCccEEECCCCh----hHHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHc
Confidence 355556555322 236667777665433 25566778999999999888889999876654321 125789999999
Q ss_pred CCeEEeecCCC
Q 019147 205 GIGIVPYCPLG 215 (345)
Q Consensus 205 gi~v~a~spl~ 215 (345)
|+.++..+.+.
T Consensus 279 gi~~~~g~~~e 289 (354)
T cd03317 279 GIPVWCGGMLE 289 (354)
T ss_pred CCcEEecCccc
Confidence 99998654443
No 167
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=34.52 E-value=3.8e+02 Score=24.91 Aligned_cols=95 Identities=17% Similarity=0.174 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHHCCCCeeecCCCCCCCc------HHHHHHHHHhcCC-CCCeEEEeeccccccCccccccCCCHHHH
Q 019147 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYT------NEILLGKALKELP-RENIQVATKFGFVELGFTSVIVKGTPEYV 111 (345)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~------sE~~lG~al~~~~-R~~~~I~tK~~~~~~~~~~~~~~~s~~~i 111 (345)
++.++..++++.+.+.|+..|--. | |+ -+.++. .+++.. ..++.|+|-.. .+
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~t---G-GEPllr~dl~~li~-~i~~~~~l~~i~itTNG~----------------ll 103 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRLT---G-GEPLVRRGCDQLVA-RLGKLPGLEELSLTTNGS----------------RL 103 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE---C-cCCCccccHHHHHH-HHHhCCCCceEEEEeChh----------------HH
Confidence 578899999999999999887533 2 21 122222 222211 12344544421 12
Q ss_pred HHHHHHHHhhcCCCceeEEEeecCCCC--------CCHHHHHHHHHHHHHcCC
Q 019147 112 RSCCEASLRRLDVEYIDLYYQHRVDTS--------VPIEETIGEMKKLVEEGK 156 (345)
Q Consensus 112 ~~~ve~SL~~Lg~d~iDl~~lH~~~~~--------~~~~~~~~~l~~l~~~G~ 156 (345)
.+ .-+.|...|++++- +-|+..++. ..++.+++.++.+++.|.
T Consensus 104 ~~-~~~~L~~aGl~~v~-ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi 154 (329)
T PRK13361 104 AR-FAAELADAGLKRLN-ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGF 154 (329)
T ss_pred HH-HHHHHHHcCCCeEE-EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCC
Confidence 22 34556677777765 355555331 236778888888888875
No 168
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=34.47 E-value=1.6e+02 Score=27.37 Aligned_cols=133 Identities=17% Similarity=0.118 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHHHCCCCeeec----------CCCCCCC--cHHHHHHHHHhcCC-CCCeEEEeeccccccCccccccCC
Q 019147 40 SEEDGISIIKHAFSKGITFFDT----------ADKYGPY--TNEILLGKALKELP-RENIQVATKFGFVELGFTSVIVKG 106 (345)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DT----------A~~Yg~G--~sE~~lG~al~~~~-R~~~~I~tK~~~~~~~~~~~~~~~ 106 (345)
+++...+..+.+.+.|+..||- ...||.+ ..-..+.+.++... .-.+-|+.|+.... +.
T Consensus 64 ~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~--------~~ 135 (309)
T PF01207_consen 64 DPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGW--------DD 135 (309)
T ss_dssp -HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESEC--------T-
T ss_pred cHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEeccccc--------cc
Confidence 6777778778888889999993 3345543 23445566655411 12356677765332 11
Q ss_pred CHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCH--HHHHHHHHHHHHcCCcceEecCC-CcHHHHHHHhhcCCCceec
Q 019147 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPI--EETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQ 183 (345)
Q Consensus 107 s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~--~~~~~~l~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q 183 (345)
+.+...+ +-+.|+..| +|.+.+|.-...... .--|+.+.++++.=.|--||=.+ ++.+.+.+.++....+-+|
T Consensus 136 ~~~~~~~-~~~~l~~~G---~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvM 211 (309)
T PF01207_consen 136 SPEETIE-FARILEDAG---VSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVM 211 (309)
T ss_dssp -CHHHHH-HHHHHHHTT-----EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEE
T ss_pred chhHHHH-HHHHhhhcc---cceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEE
Confidence 2333333 455677777 788999976443322 33588888888876666555444 6777777777665666666
Q ss_pred c
Q 019147 184 L 184 (345)
Q Consensus 184 ~ 184 (345)
+
T Consensus 212 i 212 (309)
T PF01207_consen 212 I 212 (309)
T ss_dssp E
T ss_pred E
Confidence 5
No 169
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=34.23 E-value=4e+02 Score=25.07 Aligned_cols=150 Identities=9% Similarity=0.050 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeeccccccCccccccCCCHHHHHHHHHHHHh
Q 019147 41 EEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLR 120 (345)
Q Consensus 41 ~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~ 120 (345)
.++..+.+..+.+.|++.|=.=-....-..+.-.=+++++.-.+++.|..-.. ..++.+...+-+ +.|+
T Consensus 142 ~~~~~~~a~~~~~~Gf~~~KiKvg~~~~~~d~~~v~air~~~g~~~~l~vDaN----------~~~~~~~A~~~~-~~l~ 210 (355)
T cd03321 142 AKLATERAVTAAEEGFHAVKTKIGYPTADEDLAVVRSIRQAVGDGVGLMVDYN----------QSLTVPEAIERG-QALD 210 (355)
T ss_pred HHHHHHHHHHHHHhhhHHHhhhcCCCChHhHHHHHHHHHHhhCCCCEEEEeCC----------CCcCHHHHHHHH-HHHH
Confidence 44555666666778887553211011001222222445442233444443321 123454433322 3334
Q ss_pred hcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhhcCCCceeccccCccccc-ccccch
Q 019147 121 RLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARD-IENEIV 198 (345)
Q Consensus 121 ~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~ 198 (345)
.+ ++.++..|-.. +-++.+.+|+++--|. +.|=+.++..++..+++...++++|+..+-+-.- .-.++.
T Consensus 211 ~~-----~i~~iEeP~~~----~d~~~~~~l~~~~~ipia~~E~~~~~~~~~~~i~~~~~d~i~~~~~~~GGit~~~~ia 281 (355)
T cd03321 211 QE-----GLTWIEEPTLQ----HDYEGHARIASALRTPVQMGENWLGPEEMFKALSAGACDLVMPDLMKIGGVTGWLRAS 281 (355)
T ss_pred cC-----CCCEEECCCCC----cCHHHHHHHHHhcCCCEEEcCCCcCHHHHHHHHHhCCCCeEecCHhhhCCHHHHHHHH
Confidence 44 45556655432 2366777787765443 4555678899999998888889999876654211 115789
Q ss_pred hHHHHhCCeEEe
Q 019147 199 PLCRELGIGIVP 210 (345)
Q Consensus 199 ~~~~~~gi~v~a 210 (345)
+.|+.+|+.++.
T Consensus 282 ~~A~~~gi~~~~ 293 (355)
T cd03321 282 ALAEQAGIPMSS 293 (355)
T ss_pred HHHHHcCCeecc
Confidence 999999999863
No 170
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=34.04 E-value=3.4e+02 Score=24.13 Aligned_cols=87 Identities=10% Similarity=0.051 Sum_probs=47.9
Q ss_pred HhhcCCCceeEEEeecCCCCCCHH-HHHHHHHHHHHcCCcceEecCC-CcHHHHHHHhhcCCCceeccccCccccc-ccc
Q 019147 119 LRRLDVEYIDLYYQHRVDTSVPIE-ETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQLEWSLWARD-IEN 195 (345)
Q Consensus 119 L~~Lg~d~iDl~~lH~~~~~~~~~-~~~~~l~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~ 195 (345)
+..+| +|-+.+|..+...... --|+.+.++++.-.+.-|.-.. .+.+.+.++++....+.+.+---+.... ...
T Consensus 162 ~~~~g---~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~ 238 (253)
T PRK02083 162 VEELG---AGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIG 238 (253)
T ss_pred HHHcC---CCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHH
Confidence 34555 5566776654321110 1266666666665566665543 4667787777665555554422222211 125
Q ss_pred cchhHHHHhCCeE
Q 019147 196 EIVPLCRELGIGI 208 (345)
Q Consensus 196 ~~~~~~~~~gi~v 208 (345)
++++.|++.||.+
T Consensus 239 ~~~~~~~~~~~~~ 251 (253)
T PRK02083 239 ELKAYLAEQGIPV 251 (253)
T ss_pred HHHHHHHHCCCcc
Confidence 7788898888764
No 171
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=33.93 E-value=4.5e+02 Score=25.84 Aligned_cols=66 Identities=18% Similarity=0.114 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHHcCCcce----EecCCCcHHHHHHHhhc---CCCceeccccCcccccccccchhHHHHhCCe
Q 019147 140 PIEETIGEMKKLVEEGKIKY----IGLSEASPDTIRRAHAV---HPITAVQLEWSLWARDIENEIVPLCRELGIG 207 (345)
Q Consensus 140 ~~~~~~~~l~~l~~~G~ir~----iGvS~~~~~~l~~~~~~---~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~ 207 (345)
..++..++++.+++.|.--. +|+-+.+.+.+++.++. .+++. +.++++.+-+..++.+.+++.|+-
T Consensus 321 ~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~~--~~~~~l~P~PGT~l~~~~~~~g~~ 393 (472)
T TIGR03471 321 TVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPHT--IQVSLAAPYPGTELYDQAKQNGWI 393 (472)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCc--eeeeecccCCCcHHHHHHHHCCCc
Confidence 45677888888888886432 26666777766665443 33333 345666666667888888887753
No 172
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=33.83 E-value=4.7e+02 Score=25.74 Aligned_cols=109 Identities=10% Similarity=0.031 Sum_probs=55.9
Q ss_pred CCCCCCcHHHHHHHHHhc----CCCCCeEEEeeccccccCccccccCCCHHHHHHHHHHHHhhcCCCceeEEEeecCCCC
Q 019147 63 DKYGPYTNEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS 138 (345)
Q Consensus 63 ~~Yg~G~sE~~lG~al~~----~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~ 138 (345)
-.|| .|..|-++|++ .+.+-++|.|-+-... ..-+.+.+-+.++....+ ..-+.++.++.|+..
T Consensus 72 ~VfG---g~~~L~~aI~~~~~~~~P~~I~V~ttC~~ei-------IGDDi~~v~~~~~~~~p~--~~~~pvi~v~tpgF~ 139 (455)
T PRK14476 72 TILG---GDENVEEAILNICKKAKPKIIGLCTTGLTET-------RGDDVAGALKEIRARHPE--LADTPIVYVSTPDFK 139 (455)
T ss_pred eEeC---CHHHHHHHHHHHHHhhCCCEEEEeCcchHhh-------hhccHHHHHHHHHhhccc--cCCCeEEEecCCCCC
Confidence 4677 56777777766 2345566666653211 011223333322222111 113678899999875
Q ss_pred CCH----HHHHHHHH-HHH--------HcCCcceEecCCC---cHHHHHHHhhcCCCceec
Q 019147 139 VPI----EETIGEMK-KLV--------EEGKIKYIGLSEA---SPDTIRRAHAVHPITAVQ 183 (345)
Q Consensus 139 ~~~----~~~~~~l~-~l~--------~~G~ir~iGvS~~---~~~~l~~~~~~~~~~~~q 183 (345)
... +.++++|- .+. ++++|--||-+++ +.+.++++++...+.++.
T Consensus 140 g~~~~G~~~a~~al~~~~~~~~~~~~~~~~~VNiIgg~~~~~~D~~elk~lL~~~Gl~v~~ 200 (455)
T PRK14476 140 GALEDGWAAAVEAIVEALVPPASSTGRRPRQVNVLPGSHLTPGDIEELREIIEAFGLEPII 200 (455)
T ss_pred CcHHHHHHHHHHHHHHHhcccccCCCCCCCcEEEECCCCCCcccHHHHHHHHHHcCCceEE
Confidence 432 22333332 222 3456888865443 446677777776666554
No 173
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=33.74 E-value=7.3e+02 Score=28.06 Aligned_cols=119 Identities=16% Similarity=0.129 Sum_probs=68.7
Q ss_pred hcCCCceeEEEeecCCCC-CCHHHHHHHHHHHHHcC-Cc--ceEecCCCcHHHHHHHhhcCCCceeccccCcccccc-cc
Q 019147 121 RLDVEYIDLYYQHRVDTS-VPIEETIGEMKKLVEEG-KI--KYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDI-EN 195 (345)
Q Consensus 121 ~Lg~d~iDl~~lH~~~~~-~~~~~~~~~l~~l~~~G-~i--r~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~-~~ 195 (345)
.-|-+.||+= ++.. .+-++.+..+-.+++.- .+ --|-+-++.++.++.+++..+=..+-...|...... -.
T Consensus 395 e~GA~iIDVn----~g~~~id~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~ViEaaLk~~~G~~IINSIs~~~~~~~~~ 470 (1229)
T PRK09490 395 ENGAQIIDIN----MDEGMLDSEAAMVRFLNLIASEPDIARVPIMIDSSKWEVIEAGLKCIQGKGIVNSISLKEGEEKFI 470 (1229)
T ss_pred HCCCCEEEEC----CCCCCCCHHHHHHHHHHHHHhhhccCCceEEEeCCcHHHHHHHHhhcCCCCEEEeCCCCCCCccHH
Confidence 5588999984 4322 23344444433333321 11 126677889999999998732122333444433211 13
Q ss_pred cchhHHHHhCCeEEeecCCCCcccCCCCccCCCCCccccccCCCCCCcchhhhHHHHHHHHHHHHH-cCCCH
Q 019147 196 EIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLKFFPRFNGENLDRNKSIYFRIENLAKK-YKCTS 266 (345)
Q Consensus 196 ~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~-~g~s~ 266 (345)
++++.|+++|..++++.-=..|. +...++..++++++-+.+.+ +|+++
T Consensus 471 ~~~~l~~kyga~vV~m~~de~G~-----------------------~~t~e~r~~ia~r~~~~~~~~~Gi~~ 519 (1229)
T PRK09490 471 EHARLVRRYGAAVVVMAFDEQGQ-----------------------ADTRERKIEICKRAYDILTEEVGFPP 519 (1229)
T ss_pred HHHHHHHHhCCCEEEEecCCCCC-----------------------CCCHHHHHHHHHHHHHHHHHHcCCCH
Confidence 68999999999999865333332 12245666777777777654 77643
No 174
>PRK00208 thiG thiazole synthase; Reviewed
Probab=33.74 E-value=3.6e+02 Score=24.32 Aligned_cols=76 Identities=21% Similarity=0.149 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHhhcCCCceeEEEeecCCCC-CCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhhcCCCcee
Q 019147 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAV 182 (345)
Q Consensus 105 ~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~-~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~ 182 (345)
..+.+...+-.+-..+-+++++|=|=.+..+... .+..+++++.++|+++|.+- +=+++.++...+++.+. .++++
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~v-lpyc~~d~~~ak~l~~~-G~~~v 148 (250)
T PRK00208 72 CRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEEA-GCAAV 148 (250)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc-CCCEe
Confidence 4567777888888889999999998888777654 46789999999999999965 44677777666665554 44444
No 175
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=33.14 E-value=3.2e+02 Score=23.59 Aligned_cols=132 Identities=15% Similarity=0.072 Sum_probs=71.9
Q ss_pred CHHHHHHHHHHHHHCCCCeeecC----------CCCCCC--cHHHHHHHHHhcCCCCC--eEEEeeccccccCccccccC
Q 019147 40 SEEDGISIIKHAFSKGITFFDTA----------DKYGPY--TNEILLGKALKELPREN--IQVATKFGFVELGFTSVIVK 105 (345)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA----------~~Yg~G--~sE~~lG~al~~~~R~~--~~I~tK~~~~~~~~~~~~~~ 105 (345)
+.++..+..+.+.+.|+..||-- +.||.. ..-+.+-+.++.. |+. +-|+.|+...+.
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v-~~~~~~~v~vk~r~~~~-------- 135 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAV-REAVPIPVTVKIRLGWD-------- 135 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHH-HHhcCCCEEEEEeeccC--------
Confidence 56778888888889999999842 345532 1334444555542 221 456677643220
Q ss_pred CCHHHHHHHHHHHHhhcCCCceeEEEeecCCCCC--CHHHHHHHHHHHHHcCCcceEecCCC-cHHHHHHHhhcCCCcee
Q 019147 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSV--PIEETIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHAVHPITAV 182 (345)
Q Consensus 106 ~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~--~~~~~~~~l~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~ 182 (345)
. .+...+ +-+.|+..|+ |.+.+|...... .....|+.+.++++.-.+.-++.... +.+++.++++....+.+
T Consensus 136 ~-~~~~~~-~~~~l~~~Gv---d~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V 210 (231)
T cd02801 136 D-EEETLE-LAKALEDAGA---SALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGV 210 (231)
T ss_pred C-chHHHH-HHHHHHHhCC---CEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEE
Confidence 0 112222 2234556675 555567653211 00123666667777666666665553 56777777766566666
Q ss_pred ccc
Q 019147 183 QLE 185 (345)
Q Consensus 183 q~~ 185 (345)
++-
T Consensus 211 ~ig 213 (231)
T cd02801 211 MIG 213 (231)
T ss_pred EEc
Confidence 654
No 176
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=32.93 E-value=1.8e+02 Score=28.64 Aligned_cols=103 Identities=13% Similarity=0.082 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCceeEEEeecCCCCC----CHHHHHHHHHHHHHcC-Ccc---------eEecCCCcHHHH
Q 019147 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSV----PIEETIGEMKKLVEEG-KIK---------YIGLSEASPDTI 170 (345)
Q Consensus 105 ~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~----~~~~~~~~l~~l~~~G-~ir---------~iGvS~~~~~~l 170 (345)
.++.+...+ +-..|.++|++.|.+. +...... .-++.|+.++.+++.. .++ .+|.++++-+.+
T Consensus 22 ~~~t~dkl~-ia~~Ld~~Gv~~IE~~--ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv 98 (448)
T PRK12331 22 RMTTEEMLP-ILEKLDNAGYHSLEMW--GGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVV 98 (448)
T ss_pred ccCHHHHHH-HHHHHHHcCCCEEEec--CCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhH
Confidence 344555544 5556899999999983 1110000 1123577777776652 233 256666655544
Q ss_pred HHHhh---cCCCceeccccCcccccccccchhHHHHhCCeEEe
Q 019147 171 RRAHA---VHPITAVQLEWSLWARDIENEIVPLCRELGIGIVP 210 (345)
Q Consensus 171 ~~~~~---~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a 210 (345)
.+.++ ...++++.+...+-+...-...+++++++|..+.+
T Consensus 99 ~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~ 141 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQV 141 (448)
T ss_pred HHHHHHHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEE
Confidence 43222 24566666654443322225688999999987653
No 177
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=32.91 E-value=84 Score=28.06 Aligned_cols=97 Identities=13% Similarity=0.123 Sum_probs=59.9
Q ss_pred HHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHH-HHHcCCcceEecCCC--------cHHHHHHHhhcCCCcee
Q 019147 112 RSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKK-LVEEGKIKYIGLSEA--------SPDTIRRAHAVHPITAV 182 (345)
Q Consensus 112 ~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~-l~~~G~ir~iGvS~~--------~~~~l~~~~~~~~~~~~ 182 (345)
.+.++..|+-+| +|||++=+-|-......++.++..-+ +++-|.--+.| -++ ..+++.+.++.-.|+++
T Consensus 11 ~~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~lGf~~I 88 (237)
T TIGR03849 11 PKFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDELGFEAV 88 (237)
T ss_pred HHHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHHcCCCEE
Confidence 456788888899 99999999887665444455555444 45556655556 221 11222223334567787
Q ss_pred ccccCccccccc--ccchhHHHHhCCeEEe
Q 019147 183 QLEWSLWARDIE--NEIVPLCRELGIGIVP 210 (345)
Q Consensus 183 q~~~n~~~~~~~--~~~~~~~~~~gi~v~a 210 (345)
.+.-..+.-..+ ..+++.++++|..+..
T Consensus 89 EiS~G~~~i~~~~~~rlI~~~~~~g~~v~~ 118 (237)
T TIGR03849 89 EISDGSMEISLEERCNLIERAKDNGFMVLS 118 (237)
T ss_pred EEcCCccCCCHHHHHHHHHHHHhCCCeEec
Confidence 776555443322 4778888888888763
No 178
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=32.83 E-value=3.1e+02 Score=25.83 Aligned_cols=104 Identities=20% Similarity=0.241 Sum_probs=55.4
Q ss_pred cCCCHHHHHHHHHHHHhhcCCCceeEEEe--------e-cCCCCCCHHHHHHHHHHHHHcCCcceEecC-CCcHHHHHHH
Q 019147 104 VKGTPEYVRSCCEASLRRLDVEYIDLYYQ--------H-RVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRA 173 (345)
Q Consensus 104 ~~~s~~~i~~~ve~SL~~Lg~d~iDl~~l--------H-~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-~~~~~~l~~~ 173 (345)
+.++.+.+.+ +-+.|.+.|+++|.+-.. . .+....++ +.++.+.+..+.-++..+-+. ..+.+.++.+
T Consensus 19 ~~f~~~~~~~-ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~-e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a 96 (333)
T TIGR03217 19 HQFTIEQVRA-IAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDL-EYIEAAADVVKRAKVAVLLLPGIGTVHDLKAA 96 (333)
T ss_pred CcCCHHHHHH-HHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChH-HHHHHHHHhCCCCEEEEEeccCccCHHHHHHH
Confidence 3456665554 666699999999998521 1 12111222 233333333333232222111 1246677776
Q ss_pred hhcCCCceeccccCcccccccccchhHHHHhCCeEEe
Q 019147 174 HAVHPITAVQLEWSLWARDIENEIVPLCRELGIGIVP 210 (345)
Q Consensus 174 ~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a 210 (345)
.+. .++.+.+..+.-.-+.-.+.+++++++|..+..
T Consensus 97 ~~~-gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~ 132 (333)
T TIGR03217 97 YDA-GARTVRVATHCTEADVSEQHIGMARELGMDTVG 132 (333)
T ss_pred HHC-CCCEEEEEeccchHHHHHHHHHHHHHcCCeEEE
Confidence 654 456666554432222235788899999988764
No 179
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=32.74 E-value=1.5e+02 Score=27.19 Aligned_cols=43 Identities=12% Similarity=0.127 Sum_probs=34.3
Q ss_pred HHHHHHHHcCC------CHHHHHHHHHHhcCCCeEecCCCCCHHhHHHhh
Q 019147 254 RIENLAKKYKC------TSAQLALAWVLAQGEDVVPIPGTTKIKNLDDNI 297 (345)
Q Consensus 254 ~l~~la~~~g~------s~~q~al~~~l~~~~v~~vi~g~~~~~~l~enl 297 (345)
+|.++|++.+. ++.++-..|+..... ..+..|+|+|+.+-+.+
T Consensus 226 rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~-VGitaGASTP~~li~eV 274 (281)
T PRK12360 226 KLVKICEKNCPNTFHIETADELDLEMLKDYKI-IGITAGASTPDWIIEEV 274 (281)
T ss_pred HHHHHHHHHCCCEEEECChHHCCHHHhCCCCE-EEEEccCCCCHHHHHHH
Confidence 78899998874 688998999987653 46789999999876543
No 180
>PLN02681 proline dehydrogenase
Probab=32.63 E-value=5e+02 Score=25.67 Aligned_cols=162 Identities=14% Similarity=0.085 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHCCCC-eeecCCCCCCCcHHHHHHHHHhcCCC----CCeEEEeeccccccCccccccCCCHHHHHHHHHH
Q 019147 43 DGISIIKHAFSKGIT-FFDTADKYGPYTNEILLGKALKELPR----ENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEA 117 (345)
Q Consensus 43 ~~~~~l~~A~~~Gin-~~DTA~~Yg~G~sE~~lG~al~~~~R----~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~ 117 (345)
...++++.|.+.|+. +||.=+.|=...-..+.-+..+...+ .-|+++--.... -+++.+...++.
T Consensus 221 rl~~i~~~A~~~gv~l~IDAE~s~~q~aid~l~~~l~~~yN~~~~~~~V~~T~QaYLk----------~t~~~l~~~l~~ 290 (455)
T PLN02681 221 RLQKLCERAAQLGVPLLIDAEYTSLQPAIDYITYDLAREFNKGKDRPIVYGTYQAYLK----------DARERLRLDLER 290 (455)
T ss_pred HHHHHHHHHHHCCCEEEEeCCcccchhHHHHHHHHHHHHhccccCCCcEEEEEeCccc----------cCHHHHHHHHHH
Confidence 467788999999998 67765544322233333344444333 334444443322 256777777776
Q ss_pred HHhh---cCC-----CceeE-----EEeecCCCC-CCHHH---HHH-HHHHHHH---cCCcceEecCCCcHHHHHHHhhc
Q 019147 118 SLRR---LDV-----EYIDL-----YYQHRVDTS-VPIEE---TIG-EMKKLVE---EGKIKYIGLSEASPDTIRRAHAV 176 (345)
Q Consensus 118 SL~~---Lg~-----d~iDl-----~~lH~~~~~-~~~~~---~~~-~l~~l~~---~G~ir~iGvS~~~~~~l~~~~~~ 176 (345)
+.+. +|+ -|+|- -.+.||++. ...++ .+. .++.|.+ .|.+ ++.+.+|+.+-+..+.+.
T Consensus 291 a~~~g~~~gvKLVRGAY~e~E~~~a~~~g~~~pi~~~k~~Td~~Y~~~~~~lL~~~~~~~~-~~~vATHN~~Si~~a~~~ 369 (455)
T PLN02681 291 SEREGVPLGAKLVRGAYLSLERRLAASLGVPSPVHDTIQDTHACYNRCAEFLLEKASNGDG-EVMLATHNVESGELAAAK 369 (455)
T ss_pred HHhcCCCcceEEEecCCcchhhhhHHhcCCCCCCcCCHHHHHHHHHHHHHHHhhhhccCCe-eeEEecCCHHHHHHHHHH
Confidence 6543 221 23221 112223222 11222 222 2333333 3543 788999998876665443
Q ss_pred ---C--CCceeccccCcccccccccchhHHHHhCCeEEeecCCCC
Q 019147 177 ---H--PITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGR 216 (345)
Q Consensus 177 ---~--~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~ 216 (345)
. +.+-..++|-.+..- .+.+.....+.|..|.-|.|++.
T Consensus 370 ~~~~gi~~~~~~veF~qL~GM-~d~ls~~L~~~G~~V~kYvPyG~ 413 (455)
T PLN02681 370 MNELGLHKGDPRVQFAQLLGM-SDNLSFGLGNAGFRVSKYLPYGP 413 (455)
T ss_pred HHHcCCCCCCCCEEEeccCCC-CHHHHHHHHhcCCCEEEEeeccC
Confidence 1 111113333333321 13455556677999999999973
No 181
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=32.51 E-value=4.5e+02 Score=25.07 Aligned_cols=100 Identities=15% Similarity=0.085 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHHHCCCCeeecC--CCCCCCcHHHHHHHHHhcCCCCCe-EEEeeccccccCccccccCCCHHHHHHHH
Q 019147 39 LSEEDGISIIKHAFSKGITFFDTA--DKYGPYTNEILLGKALKELPRENI-QVATKFGFVELGFTSVIVKGTPEYVRSCC 115 (345)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA--~~Yg~G~sE~~lG~al~~~~R~~~-~I~tK~~~~~~~~~~~~~~~s~~~i~~~v 115 (345)
.+.++..+.++.+.+.|++.|--- ..-- ...-..+-+.++.+.+ .+ -|..+.++ .+.+.+
T Consensus 104 ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~-~~~~e~l~~~i~~Ik~-~~p~i~i~~g~-----------lt~e~l---- 166 (371)
T PRK09240 104 LDEEEIEREMAAIKKLGFEHILLLTGEHEA-KVGVDYIRRALPIARE-YFSSVSIEVQP-----------LSEEEY---- 166 (371)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCC-CCCHHHHHHHHHHHHH-hCCCceeccCC-----------CCHHHH----
Confidence 578889999999999999977321 1110 0122344445544211 11 12223332 234444
Q ss_pred HHHHhhcCCCceeEEEe----------ecCCCCCCHHHHHHHHHHHHHcCC
Q 019147 116 EASLRRLDVEYIDLYYQ----------HRVDTSVPIEETIGEMKKLVEEGK 156 (345)
Q Consensus 116 e~SL~~Lg~d~iDl~~l----------H~~~~~~~~~~~~~~l~~l~~~G~ 156 (345)
+-|+..|++++-+.+= |.......+++.+++++.+++.|.
T Consensus 167 -~~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~ 216 (371)
T PRK09240 167 -AELVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGI 216 (371)
T ss_pred -HHHHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCC
Confidence 5788889886665432 211123357889999999999995
No 182
>PRK10200 putative racemase; Provisional
Probab=32.46 E-value=1.8e+02 Score=25.68 Aligned_cols=63 Identities=21% Similarity=0.064 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHHhhcCCCceeEEEeecCCCC------------CCHHHHHHHHHHHHHcCCcceEecCCCcHHH
Q 019147 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS------------VPIEETIGEMKKLVEEGKIKYIGLSEASPDT 169 (345)
Q Consensus 106 ~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~------------~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~ 169 (345)
-+.+..++-++..-.+.+.++++.+.+|+++.. .+...+.+.++.|.+.| +..|-+...++..
T Consensus 14 aT~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g-~~~iviaCNTah~ 88 (230)
T PRK10200 14 STIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAG-AEGIVLCTNTMHK 88 (230)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCEEEECCchHHH
Confidence 356778888888888899999999999998432 13345677788888887 6888887655543
No 183
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=32.42 E-value=1.2e+02 Score=27.19 Aligned_cols=52 Identities=10% Similarity=0.079 Sum_probs=35.3
Q ss_pred ccchhHHHHhCCeEEeecCCCCcccCCCCccCCCCCccccccCCCCCCcchhhhHHHHHHHHHHHHHcCCC
Q 019147 195 NEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLKFFPRFNGENLDRNKSIYFRIENLAKKYKCT 265 (345)
Q Consensus 195 ~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s 265 (345)
...+++|+..|...+...|...|... ...+.++...+.++.+.++|+++|+.
T Consensus 93 ~~~i~~a~~lGa~~i~~~~~~~~~~~-------------------~~~~~~~~~~~~l~~l~~~a~~~gv~ 144 (275)
T PRK09856 93 KLAMDMAKEMNAGYTLISAAHAGYLT-------------------PPNVIWGRLAENLSELCEYAENIGMD 144 (275)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCCCC-------------------CHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 46789999999999877665432100 01223456667788889999998863
No 184
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=32.08 E-value=2e+02 Score=25.32 Aligned_cols=75 Identities=19% Similarity=0.160 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHHCCCCeeecCCCCCC-CcHHHHHHHHHhcCCCCCeEEEeeccccccCccccccCCCHHHHHHHHHH
Q 019147 39 LSEEDGISIIKHAFSKGITFFDTADKYGP-YTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEA 117 (345)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~-G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~ 117 (345)
.+.++..++.+.+.+.|..||=|+..|+. |.+-+.+....+. -+.++-|-.=.|. .+.+...+-++.
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~-~~~~~~IKasGGI-----------rt~~~a~~~i~a 200 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRET-VGPRVGVKASGGI-----------RTLEDALAMIEA 200 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHH-hCCCceEEeeCCc-----------CCHHHHHHHHHc
Confidence 36778899999999999999999999963 5555555444333 2233222211121 246666666666
Q ss_pred HHhhcCCC
Q 019147 118 SLRRLDVE 125 (345)
Q Consensus 118 SL~~Lg~d 125 (345)
--.|+||.
T Consensus 201 GA~riGtS 208 (221)
T PRK00507 201 GATRLGTS 208 (221)
T ss_pred CcceEccC
Confidence 66666664
No 185
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=32.01 E-value=4.2e+02 Score=24.55 Aligned_cols=138 Identities=14% Similarity=0.079 Sum_probs=80.5
Q ss_pred CHHHHHHHHHHHHHCCCCeeecC---------CCCC-CC--cHHHHHHHHHhcC-CCCCeEEEeeccccccCccccccCC
Q 019147 40 SEEDGISIIKHAFSKGITFFDTA---------DKYG-PY--TNEILLGKALKEL-PRENIQVATKFGFVELGFTSVIVKG 106 (345)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA---------~~Yg-~G--~sE~~lG~al~~~-~R~~~~I~tK~~~~~~~~~~~~~~~ 106 (345)
++++..+..+.+.+.|+..||-- ..|+ .. ..-+.+.+.++.. .+-.+-|+.|+......
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~-------- 144 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDD-------- 144 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCC--------
Confidence 67788888888889999999852 1222 10 1235555666552 12236688887432210
Q ss_pred CHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCH--HHHHHHHHHHHHcCCcceEecCC-CcHHHHHHHhhcCCCceec
Q 019147 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPI--EETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQ 183 (345)
Q Consensus 107 s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~--~~~~~~l~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q 183 (345)
....+ ..+-+.|+..|+| .+.+|........ .-.|+.+.++++.=.|--||... .+.+.+.++++....+.+|
T Consensus 145 ~~~~~-~~~a~~l~~~G~d---~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~Vm 220 (319)
T TIGR00737 145 AHINA-VEAARIAEDAGAQ---AVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVM 220 (319)
T ss_pred CcchH-HHHHHHHHHhCCC---EEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEE
Confidence 01111 2345557777855 4556754221111 12477777777765677777765 5678888888777788888
Q ss_pred cccCcc
Q 019147 184 LEWSLW 189 (345)
Q Consensus 184 ~~~n~~ 189 (345)
+---++
T Consensus 221 igR~~l 226 (319)
T TIGR00737 221 IGRGAL 226 (319)
T ss_pred EChhhh
Confidence 754433
No 186
>PRK03031 rnpA ribonuclease P; Reviewed
Probab=31.85 E-value=2.4e+02 Score=22.12 Aligned_cols=64 Identities=19% Similarity=0.180 Sum_probs=43.7
Q ss_pred CCCCeEEEeeccccccCccccccCCCHHHHHHHHHHHHhhcCC---CceeEEEeecCCCC-CCHHHHHHHHHHHHHc
Q 019147 82 PRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDV---EYIDLYYQHRVDTS-VPIEETIGEMKKLVEE 154 (345)
Q Consensus 82 ~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~Lg~---d~iDl~~lH~~~~~-~~~~~~~~~l~~l~~~ 154 (345)
.|=-+.|+-|++... ..+..+++.+.+..+.+.. ...|++++-.+... .+..++.+.|..|.++
T Consensus 47 ~R~G~~VsKK~~~~A---------V~RNriKR~lRe~~R~~~~~l~~g~diVvi~r~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03031 47 TRFGISISQKVSKKA---------VVRNRIKRQIRAALRQLLPRIAPGWDLVIIVKPTAAECNYEQFLQELEQLLIQ 114 (122)
T ss_pred cEEEEEEecccccch---------hhhhHHHHHHHHHHHHhhhccCCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 344456666655322 3477888888888887642 35799999988654 5677888888777655
No 187
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=31.60 E-value=2.8e+02 Score=26.33 Aligned_cols=60 Identities=17% Similarity=0.088 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHhhcCCCceeEEEee-cCCCC-----------CC-HHH---H-HHHHHHHHHcCCcceEecCCCcH
Q 019147 106 GTPEYVRSCCEASLRRLDVEYIDLYYQH-RVDTS-----------VP-IEE---T-IGEMKKLVEEGKIKYIGLSEASP 167 (345)
Q Consensus 106 ~s~~~i~~~ve~SL~~Lg~d~iDl~~lH-~~~~~-----------~~-~~~---~-~~~l~~l~~~G~ir~iGvS~~~~ 167 (345)
-+.+.+.+.++.. .+|+.+++.+|.+. .|... .+ .+. . -.+.+.|.+.|-. .+++|+|..
T Consensus 164 qt~~~~~~~l~~~-~~l~~~~i~~y~l~~~pgT~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~Gy~-~~~~~~fa~ 240 (377)
T PRK08599 164 QTIEDFKESLAKA-LALDIPHYSAYSLILEPKTVFYNLMRKGKLRLPGEDLEAEMYEYLMDEMEAHGFH-QYEISNFAK 240 (377)
T ss_pred CCHHHHHHHHHHH-HccCCCEEeeeceeecCCChhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-EeeeeeeeC
Confidence 4678888877764 66999999888654 22110 01 111 2 2245666677754 578887763
No 188
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=31.42 E-value=4.4e+02 Score=24.61 Aligned_cols=108 Identities=14% Similarity=0.081 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHH-HHHHHHHHHHHcCCcceEecCC----CcHHH----HHHHhhcCC
Q 019147 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIE-ETIGEMKKLVEEGKIKYIGLSE----ASPDT----IRRAHAVHP 178 (345)
Q Consensus 108 ~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~-~~~~~l~~l~~~G~ir~iGvS~----~~~~~----l~~~~~~~~ 178 (345)
.+.+.+.++..-+..+ |.-+.+-.-++....+ .+.+.++.+..-..++.+|+.+ ..+.. +.+.++...
T Consensus 127 ~~~~~~~i~~i~~~~~---i~~VvltGGEPL~~~d~~L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~ 203 (321)
T TIGR03821 127 KAQWKEALEYIAQHPE---INEVILSGGDPLMAKDHRLDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSR 203 (321)
T ss_pred HHHHHHHHHHHHhcCC---CCEEEEeCcccccCCchHHHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcC
Confidence 3444444444333333 3334444444432222 2556666777777888888764 32222 222333344
Q ss_pred Ccee-ccccCcccc--cccccchhHHHHhCCeEEeecCCCCcc
Q 019147 179 ITAV-QLEWSLWAR--DIENEIVPLCRELGIGIVPYCPLGRGF 218 (345)
Q Consensus 179 ~~~~-q~~~n~~~~--~~~~~~~~~~~~~gi~v~a~spl~~G~ 218 (345)
+..+ ++.+|-... +...+.++.+++.||.+...+++..|+
T Consensus 204 ~~~~~~~h~dh~~Ei~d~~~~ai~~L~~~Gi~v~~qtvllkgi 246 (321)
T TIGR03821 204 LQTVLVVHINHANEIDAEVADALAKLRNAGITLLNQSVLLRGV 246 (321)
T ss_pred CcEEEEeeCCChHhCcHHHHHHHHHHHHcCCEEEecceeeCCC
Confidence 3343 445553211 112467788889999999999988765
No 189
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=31.38 E-value=4.4e+02 Score=24.62 Aligned_cols=94 Identities=15% Similarity=0.140 Sum_probs=51.5
Q ss_pred CCCeEEEeeccccccCccccccCCCHHHHHHHHHHHHhhcCCCceeEEEeecCCC--C--CCH--HHHHHHHHHHHHcCC
Q 019147 83 RENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDT--S--VPI--EETIGEMKKLVEEGK 156 (345)
Q Consensus 83 R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~--~--~~~--~~~~~~l~~l~~~G~ 156 (345)
.+++.|..|+....... ...+.+... .+-+.|+..|+|+|++ |.... . .+. ...++.++++++.=.
T Consensus 219 G~d~~v~vri~~~~~~~----~g~~~~e~~-~ia~~Le~~gvd~iev---~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~ 290 (336)
T cd02932 219 PEDKPLFVRISATDWVE----GGWDLEDSV-ELAKALKELGVDLIDV---SSGGNSPAQKIPVGPGYQVPFAERIRQEAG 290 (336)
T ss_pred CCCceEEEEEcccccCC----CCCCHHHHH-HHHHHHHHcCCCEEEE---CCCCCCcccccCCCccccHHHHHHHHhhCC
Confidence 45678888887532110 112343333 2344566777666653 42110 0 011 112455666666656
Q ss_pred cceEecCCC-cHHHHHHHhhcCCCceecc
Q 019147 157 IKYIGLSEA-SPDTIRRAHAVHPITAVQL 184 (345)
Q Consensus 157 ir~iGvS~~-~~~~l~~~~~~~~~~~~q~ 184 (345)
|--++..+. +++..+++++....|.+++
T Consensus 291 iPVi~~G~i~t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 291 IPVIAVGLITDPEQAEAILESGRADLVAL 319 (336)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCCCeehh
Confidence 777777664 6777888887776777665
No 190
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=31.18 E-value=3.6e+02 Score=26.83 Aligned_cols=101 Identities=11% Similarity=0.106 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcC-CcceEecCC----C--cHHHHHHHhhcCC
Q 019147 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSE----A--SPDTIRRAHAVHP 178 (345)
Q Consensus 106 ~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvS~----~--~~~~l~~~~~~~~ 178 (345)
.+++.|.+.++...++.|+.++ .+.......+.+.+.+.+++++++| .--.+++++ . +.+.++.+. ...
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~---~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~-~aG 297 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFF---ILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYR-RAG 297 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEE---EEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHH-HhC
Confidence 4789999999998888886654 3333333344556777788888887 323344432 1 334444433 333
Q ss_pred CceeccccCc--------ccccc----cccchhHHHHhCCeEEe
Q 019147 179 ITAVQLEWSL--------WARDI----ENEIVPLCRELGIGIVP 210 (345)
Q Consensus 179 ~~~~q~~~n~--------~~~~~----~~~~~~~~~~~gi~v~a 210 (345)
+..+++-.-- +.... ..+.+..|+++||.+.+
T Consensus 298 ~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~ 341 (497)
T TIGR02026 298 LVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEA 341 (497)
T ss_pred CcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEE
Confidence 3333321111 11111 14678889999998754
No 191
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=30.97 E-value=2e+02 Score=27.28 Aligned_cols=88 Identities=13% Similarity=0.189 Sum_probs=56.3
Q ss_pred EEeecCCCC-----------CCHHHHHHHHHHHHHcCCcceEecC-------CCcHHH---HHHHhhcCCCceeccccCc
Q 019147 130 YYQHRVDTS-----------VPIEETIGEMKKLVEEGKIKYIGLS-------EASPDT---IRRAHAVHPITAVQLEWSL 188 (345)
Q Consensus 130 ~~lH~~~~~-----------~~~~~~~~~l~~l~~~G~ir~iGvS-------~~~~~~---l~~~~~~~~~~~~q~~~n~ 188 (345)
+.||.|+.. .++++++++.+...+... +.|-+- |.+.++ |.+++...+-.++-++||+
T Consensus 216 iSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~-~rVt~EY~Ll~~VND~~e~A~~L~~ll~~~~~~VNLIP~Np 294 (349)
T COG0820 216 ISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSG-RRVTFEYVLLDGVNDSLEHAKELAKLLKGIPCKVNLIPYNP 294 (349)
T ss_pred EecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccC-ceEEEEeeecccccCCHHHHHHHHHHhcCCCceEEEeecCC
Confidence 678998542 246788888888776555 444331 344444 4455555666899999999
Q ss_pred ccccc-c-------ccchhHHHHhCCeEEeecCCCCcc
Q 019147 189 WARDI-E-------NEIVPLCRELGIGIVPYCPLGRGF 218 (345)
Q Consensus 189 ~~~~~-~-------~~~~~~~~~~gi~v~a~spl~~G~ 218 (345)
+.... + ....+...++||.+.....-+..+
T Consensus 295 ~~~~~y~r~~~~~i~~F~~~L~~~gv~~tvR~~~g~DI 332 (349)
T COG0820 295 VPGSDYERSSKERIRKFLKILKKAGVLVTVRKTRGDDI 332 (349)
T ss_pred CCCCCccCCcHHHHHHHHHHHHhCCeeEEecccccccc
Confidence 87542 1 344555567789888877766544
No 192
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=30.69 E-value=54 Score=21.06 Aligned_cols=42 Identities=12% Similarity=0.145 Sum_probs=28.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhcCCCeEecCCCCCHHhHHHhhcccCC
Q 019147 255 IENLAKKYKCTSAQLALAWVLAQGEDVVPIPGTTKIKNLDDNIGSLTV 302 (345)
Q Consensus 255 l~~la~~~g~s~~q~al~~~l~~~~v~~vi~g~~~~~~l~enl~a~~~ 302 (345)
|++||+..|+|++.+ ..+|+.+. -+...+.+++.+.++.+++
T Consensus 2 i~dIA~~agvS~~TV--Sr~ln~~~----~vs~~tr~rI~~~a~~lgY 43 (46)
T PF00356_consen 2 IKDIAREAGVSKSTV--SRVLNGPP----RVSEETRERILEAAEELGY 43 (46)
T ss_dssp HHHHHHHHTSSHHHH--HHHHTTCS----SSTHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHCcCHHHH--HHHHhCCC----CCCHHHHHHHHHHHHHHCC
Confidence 678999999999885 45555442 3455666777776666554
No 193
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=30.54 E-value=4e+02 Score=23.95 Aligned_cols=76 Identities=21% Similarity=0.140 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHhhcCCCceeEEEeecCCCC-CCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhhcCCCcee
Q 019147 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAV 182 (345)
Q Consensus 105 ~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~-~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~ 182 (345)
..+.+...+-.+-..+-+++++|=|=.+..+... .+..+++++.++|+++|.+- +=+++.++...+++.+. .++++
T Consensus 72 ~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~v-lpyc~dd~~~ar~l~~~-G~~~v 148 (248)
T cd04728 72 CRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTV-LPYCTDDPVLAKRLEDA-GCAAV 148 (248)
T ss_pred CCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc-CCCEe
Confidence 4567777788888889999999998888777654 45789999999999999965 44677777666665554 44444
No 194
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=30.29 E-value=2.3e+02 Score=25.60 Aligned_cols=99 Identities=18% Similarity=0.209 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCC-cceEecCCCcHHHHHHHhhcCCCceec
Q 019147 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPDTIRRAHAVHPITAVQ 183 (345)
Q Consensus 105 ~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~q 183 (345)
.++.+...+ +-+.|.++|++.|.+-. |... .+.++..+.+.+.++ .+-++....+.+.++.+.+. .++.+-
T Consensus 18 ~~s~~~k~~-i~~~L~~~Gv~~IEvG~---P~~~---~~~~~~~~~l~~~~~~~~v~~~~r~~~~di~~a~~~-g~~~i~ 89 (262)
T cd07948 18 FFDTEDKIE-IAKALDAFGVDYIELTS---PAAS---PQSRADCEAIAKLGLKAKILTHIRCHMDDARIAVET-GVDGVD 89 (262)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEEEC---CCCC---HHHHHHHHHHHhCCCCCcEEEEecCCHHHHHHHHHc-CcCEEE
Confidence 355665555 45559999988888763 5332 334555555555444 33455556777888888775 333333
Q ss_pred cccCc--------cccccc------ccchhHHHHhCCeEEee
Q 019147 184 LEWSL--------WARDIE------NEIVPLCRELGIGIVPY 211 (345)
Q Consensus 184 ~~~n~--------~~~~~~------~~~~~~~~~~gi~v~a~ 211 (345)
+.++. +.+..+ .+.+.+++++|+.|...
T Consensus 90 i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~ 131 (262)
T cd07948 90 LVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFS 131 (262)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 32221 111111 46678889999887654
No 195
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=30.24 E-value=2.8e+02 Score=26.64 Aligned_cols=61 Identities=13% Similarity=0.057 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHHhhcCCCceeEEEeec-CCCC-----------C-CHHH---HH-HHHHHHHHcCCcceEecCCCcH
Q 019147 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHR-VDTS-----------V-PIEE---TI-GEMKKLVEEGKIKYIGLSEASP 167 (345)
Q Consensus 105 ~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~-~~~~-----------~-~~~~---~~-~~l~~l~~~G~ir~iGvS~~~~ 167 (345)
.-+.+.+++.++..++ |+.++|.+|.+.- |... . +.++ .+ .+.+.|.+.|-.+ +++|||..
T Consensus 173 gqt~e~~~~~l~~~~~-l~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~~-yeis~fa~ 250 (390)
T PRK06582 173 GQTLKDWQEELKQAMQ-LATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYFR-YEISNYAK 250 (390)
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCce-eeceeeeC
Confidence 3467888899988886 8999999998763 3210 0 1111 22 2345566677654 78888764
No 196
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=30.17 E-value=4.9e+02 Score=24.75 Aligned_cols=101 Identities=15% Similarity=0.117 Sum_probs=58.2
Q ss_pred CCHHHHHHHHHHHHHCCCCeeecCCCCCCC-cHHHHHHHHHhcCCCCCe-EEEeeccccccCccccccCCCHHHHHHHHH
Q 019147 39 LSEEDGISIIKHAFSKGITFFDTADKYGPY-TNEILLGKALKELPRENI-QVATKFGFVELGFTSVIVKGTPEYVRSCCE 116 (345)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G-~sE~~lG~al~~~~R~~~-~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve 116 (345)
.+.++..+.++.+.+.|++-|=--..-+.- ..-..+.+.++.+ ++.+ .+...++ ..+.+.+
T Consensus 103 Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~eii~~I-k~~~p~i~Iei~-----------~lt~e~~----- 165 (366)
T TIGR02351 103 LNEEEIEREIEAIKKSGFKEILLVTGESEKAAGVEYIAEAIKLA-REYFSSLAIEVQ-----------PLNEEEY----- 165 (366)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHH-HHhCCccccccc-----------cCCHHHH-----
Confidence 478899999999999999966422111111 1223455566542 1111 1111221 1344544
Q ss_pred HHHhhcCCCceeEEE----------eecCCCCCCHHHHHHHHHHHHHcCC
Q 019147 117 ASLRRLDVEYIDLYY----------QHRVDTSVPIEETIGEMKKLVEEGK 156 (345)
Q Consensus 117 ~SL~~Lg~d~iDl~~----------lH~~~~~~~~~~~~~~l~~l~~~G~ 156 (345)
+-|+..|++++-+.+ +|-......+++.+++++.+++.|.
T Consensus 166 ~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~ 215 (366)
T TIGR02351 166 KKLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGM 215 (366)
T ss_pred HHHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCC
Confidence 568888888765543 2222233457888999999999985
No 197
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=30.06 E-value=4.3e+02 Score=24.13 Aligned_cols=157 Identities=15% Similarity=0.190 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHH--HHhcCCCCCeEEEeeccccccCccccccCCCHHHHHHHHHHHH
Q 019147 42 EDGISIIKHAFSKGITFFDTADKYGPYTNEILLGK--ALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASL 119 (345)
Q Consensus 42 ~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~--al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL 119 (345)
+...+.++.-.+.+..|+..+..=|.+..+..+.- .|+. +-.+-+..-+.. .+.+...++..+.+.
T Consensus 16 ~~~~~~~~~l~~~~p~fvsvT~~~~~~~~~~t~~~~~~l~~--~~g~~~i~Hltc---------r~~~~~~l~~~L~~~- 83 (281)
T TIGR00677 16 QNLYERMDRMVASGPLFIDITWGAGGTTAELTLTIASRAQN--VVGVETCMHLTC---------TNMPIEMIDDALERA- 83 (281)
T ss_pred HHHHHHHHHHhhCCCCEEEeccCCCCcchhhHHHHHHHHHH--hcCCCeeEEecc---------CCCCHHHHHHHHHHH-
Confidence 44566667777889999988754433233443432 2332 112211111111 123455565555544
Q ss_pred hhcCCCceeEEEeecCCC---------CCCHHHHHHHHHHHHHc-CCcceEecCCCcH--------H-HHHHHhhc----
Q 019147 120 RRLDVEYIDLYYQHRVDT---------SVPIEETIGEMKKLVEE-GKIKYIGLSEASP--------D-TIRRAHAV---- 176 (345)
Q Consensus 120 ~~Lg~d~iDl~~lH~~~~---------~~~~~~~~~~l~~l~~~-G~ir~iGvS~~~~--------~-~l~~~~~~---- 176 (345)
..+|++ +++.|-...+ ...++...+.++.+++. |.--.||+..++. + ++..+.++
T Consensus 84 ~~~Gi~--niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aG 161 (281)
T TIGR00677 84 YSNGIQ--NILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDYFCIGVAGYPEGHPEAESVELDLKYLKEKVDAG 161 (281)
T ss_pred HHCCCC--EEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCceEEEEEECCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 777765 3444443221 11233355556666554 4435799987641 1 23343333
Q ss_pred CCCceeccccCcccccccccchhHHHHhCCeEEeecCCCCccc
Q 019147 177 HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGFF 219 (345)
Q Consensus 177 ~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~L 219 (345)
..+-+-|.-|+. ..-.+.++.|++.|+.+ |+--|++
T Consensus 162 A~f~iTQ~~Fd~---~~~~~f~~~~~~~gi~~----PIi~GI~ 197 (281)
T TIGR00677 162 ADFIITQLFYDV---DNFLKFVNDCRAIGIDC----PIVPGIM 197 (281)
T ss_pred CCEeeccceecH---HHHHHHHHHHHHcCCCC----CEEeecc
Confidence 345566776664 22247888899987654 4444554
No 198
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=29.74 E-value=54 Score=28.21 Aligned_cols=67 Identities=18% Similarity=0.239 Sum_probs=41.7
Q ss_pred HHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecC-CCcHHHHHHHhhcCCCceeccccCc
Q 019147 118 SLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPITAVQLEWSL 188 (345)
Q Consensus 118 SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~n~ 188 (345)
.+..+|.||+=+.+ +|.....+ ..+...++.+.-..+.+||- |.+.+.+.++++...++++|+.-+.
T Consensus 14 ~~~~~g~d~~Gfi~--~~~S~R~v--~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e 81 (197)
T PF00697_consen 14 LAAELGADYLGFIF--YPKSPRYV--SPDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGDE 81 (197)
T ss_dssp HHHHHTSSEEEEE----TTCTTB----HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SGG
T ss_pred HHHHcCCCEEeeec--CCCCCCcc--CHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCCC
Confidence 45678988888763 34322112 24445555555555578985 5677888888888999999986553
No 199
>COG3215 PilZ Tfp pilus assembly protein PilZ [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=29.44 E-value=72 Score=24.40 Aligned_cols=55 Identities=22% Similarity=0.167 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeeccccc
Q 019147 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVE 96 (345)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~ 96 (345)
|..-....---.+++|.-|+-|-..|.-| .|.++---|-+ ..++++|++|+.+..
T Consensus 18 D~a~LYsaYMpfl~nGglFVpTnk~y~iG-~evfl~l~lld-~pekl~vagkVaWit 72 (117)
T COG3215 18 DMALLYSAYMPFLENGGLFVPTNKVYSIG-EEVFLLLELLD-FPEKLPVAGKVAWIT 72 (117)
T ss_pred hHHHHHHHHhHHHhcCcEEcccCCccccc-hhhhhhhhhcC-chhhccccceEEEEc
Confidence 34444555556679999999999999876 55655444433 567999999996543
No 200
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=29.22 E-value=4.3e+02 Score=23.84 Aligned_cols=114 Identities=17% Similarity=0.184 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHHHHCCCCeeecCC-CCCCCcHHHHHHHHHhcCCC-CCeEEEeeccccccCccccccCCCHHHHHHHHH
Q 019147 39 LSEEDGISIIKHAFSKGITFFDTAD-KYGPYTNEILLGKALKELPR-ENIQVATKFGFVELGFTSVIVKGTPEYVRSCCE 116 (345)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA~-~Yg~G~sE~~lG~al~~~~R-~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve 116 (345)
.+.++..++++...+.||..|+... .++. .+.-.-+.+....+ ..++.. . ....+.++++++
T Consensus 19 ~s~~~k~~i~~~L~~~Gv~~IEvG~P~~~~--~~~~~~~~l~~~~~~~~v~~~---~-----------r~~~~di~~a~~ 82 (262)
T cd07948 19 FDTEDKIEIAKALDAFGVDYIELTSPAASP--QSRADCEAIAKLGLKAKILTH---I-----------RCHMDDARIAVE 82 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCCH--HHHHHHHHHHhCCCCCcEEEE---e-----------cCCHHHHHHHHH
Confidence 4678899999999999999999863 3332 33322333432222 122111 0 123455555544
Q ss_pred HHHhhcCCCceeEEEeecC-----CCCCCHHH----HHHHHHHHHHcCCcceEecCC---CcHHHHHHH
Q 019147 117 ASLRRLDVEYIDLYYQHRV-----DTSVPIEE----TIGEMKKLVEEGKIKYIGLSE---ASPDTIRRA 173 (345)
Q Consensus 117 ~SL~~Lg~d~iDl~~lH~~-----~~~~~~~~----~~~~l~~l~~~G~ir~iGvS~---~~~~~l~~~ 173 (345)
.|++.|.++.=-++ ......++ +.+.++.+++.|.--.+++.. .+.+.+.++
T Consensus 83 -----~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~ 146 (262)
T cd07948 83 -----TGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRV 146 (262)
T ss_pred -----cCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHH
Confidence 37777776652111 01122333 455557777888765566532 344444443
No 201
>smart00642 Aamy Alpha-amylase domain.
Probab=29.01 E-value=70 Score=26.72 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=18.4
Q ss_pred ccchhHHHHhCCeEEeecCCCC
Q 019147 195 NEIVPLCRELGIGIVPYCPLGR 216 (345)
Q Consensus 195 ~~~~~~~~~~gi~v~a~spl~~ 216 (345)
+.+++.|+++||.|+.=-++..
T Consensus 73 ~~lv~~~h~~Gi~vilD~V~NH 94 (166)
T smart00642 73 KELVDAAHARGIKVILDVVINH 94 (166)
T ss_pred HHHHHHHHHCCCEEEEEECCCC
Confidence 6899999999999997666654
No 202
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=28.92 E-value=3.4e+02 Score=25.75 Aligned_cols=27 Identities=26% Similarity=0.170 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHhhcCCCceeEEEee
Q 019147 106 GTPEYVRSCCEASLRRLDVEYIDLYYQH 133 (345)
Q Consensus 106 ~s~~~i~~~ve~SL~~Lg~d~iDl~~lH 133 (345)
-+.+.+.+.++..+ +|+.++|.+|.+.
T Consensus 163 qt~e~~~~~l~~~~-~l~~~~is~y~l~ 189 (374)
T PRK05799 163 QTLEDWKETLEKVV-ELNPEHISCYSLI 189 (374)
T ss_pred CCHHHHHHHHHHHH-hcCCCEEEEeccE
Confidence 46788888777765 4888999888765
No 203
>PF14502 HTH_41: Helix-turn-helix domain
Probab=28.77 E-value=60 Score=21.20 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=24.5
Q ss_pred HHHHHHHHHcCCC--HHHHHHHHHHhcCCCe
Q 019147 253 FRIENLAKKYKCT--SAQLALAWVLAQGEDV 281 (345)
Q Consensus 253 ~~l~~la~~~g~s--~~q~al~~~l~~~~v~ 281 (345)
..+.+++++++++ ..|-||.++-..+.|.
T Consensus 7 ~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI~ 37 (48)
T PF14502_consen 7 PTISEYSEKFGVSRGTIQNALKFLEENGAIK 37 (48)
T ss_pred CCHHHHHHHhCcchhHHHHHHHHHHHCCcEE
Confidence 3788999999987 5899999999988754
No 204
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=28.73 E-value=90 Score=18.67 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHcCCCHHHHHH
Q 019147 250 SIYFRIENLAKKYKCTSAQLAL 271 (345)
Q Consensus 250 ~~~~~l~~la~~~g~s~~q~al 271 (345)
+..+.|.++|++.|.|.+++.-
T Consensus 9 ~~~~~l~~~a~~~g~s~s~~ir 30 (39)
T PF01402_consen 9 ELYERLDELAKELGRSRSELIR 30 (39)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHH
Confidence 4556899999999999887643
No 205
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=28.55 E-value=78 Score=24.62 Aligned_cols=27 Identities=11% Similarity=0.270 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHHCCCCeeecCCCCC
Q 019147 40 SEEDGISIIKHAFSKGITFFDTADKYG 66 (345)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg 66 (345)
+...+.+....+++.|++.||.+..|.
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 567789999999999999999999885
No 206
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=28.50 E-value=2e+02 Score=27.85 Aligned_cols=67 Identities=18% Similarity=0.102 Sum_probs=48.8
Q ss_pred HHHHHHHHHcCCc--c-eEecCCCcHHHHHHHhhcCCCceeccccCccccc-ccccchhHHHHhCCeEEee
Q 019147 145 IGEMKKLVEEGKI--K-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWARD-IENEIVPLCRELGIGIVPY 211 (345)
Q Consensus 145 ~~~l~~l~~~G~i--r-~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~-~~~~~~~~~~~~gi~v~a~ 211 (345)
++.+.+|++.-.+ . .-|-+.++...+..+++....+++|+...-+-.- .-.++...|+.+|+.+..+
T Consensus 248 ~~~~~~L~~~~~~~i~ia~gE~~~~~~~~~~li~~~a~Divq~d~~~~GGit~~~kia~lA~a~gi~~~pH 318 (394)
T PRK15440 248 YWGYRELKRNAPAGMMVTSGEHEATLQGFRTLLEMGCIDIIQPDVGWCGGLTELVKIAALAKARGQLVVPH 318 (394)
T ss_pred HHHHHHHHHhCCCCCceecCCCccCHHHHHHHHHcCCCCEEeCCccccCCHHHHHHHHHHHHHcCCeeccc
Confidence 6677778776542 2 2377778889999999888899999876654211 1258899999999998654
No 207
>PRK00499 rnpA ribonuclease P; Reviewed
Probab=28.44 E-value=2.8e+02 Score=21.42 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=43.2
Q ss_pred CCCCeEEEeeccccccCccccccCCCHHHHHHHHHHHHhhcCC---CceeEEEeecCCCC-CCHHHHHHHHHHHHHc
Q 019147 82 PRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDV---EYIDLYYQHRVDTS-VPIEETIGEMKKLVEE 154 (345)
Q Consensus 82 ~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~Lg~---d~iDl~~lH~~~~~-~~~~~~~~~l~~l~~~ 154 (345)
.|=-+.|+-|++. . ..+..+++.+.+..+.+.. ...|++++-.+... .+..++-+.|..|.++
T Consensus 38 ~R~GisVsKKvgk-A---------V~RNriKR~lRE~~R~~~~~~~~~~d~v~i~r~~~~~~~~~~l~~~l~~ll~k 104 (114)
T PRK00499 38 FRVGISVSKKVGN-A---------VVRNRIKRLIRESFRELKDEIKKGYDFVVIARKPAAELDYKEIKKSLIHVLKL 104 (114)
T ss_pred cEEEEEEecccCc-h---------hhHhHHHHHHHHHHHHhhhcccCCceEEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 4445677777764 2 3477888888888876643 35799999888653 5677777777776654
No 208
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=28.14 E-value=4.6e+02 Score=23.83 Aligned_cols=29 Identities=7% Similarity=0.022 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHHHCCCCeeecCCCCCC
Q 019147 39 LSEEDGISIIKHAFSKGITFFDTADKYGP 67 (345)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~ 67 (345)
+|.+...+.++..++.|++-+=..-..|.
T Consensus 19 iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE 47 (292)
T PRK03170 19 VDFAALRKLVDYLIANGTDGLVVVGTTGE 47 (292)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCcCCc
Confidence 57888899999999999987754444443
No 209
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=28.13 E-value=1.9e+02 Score=21.19 Aligned_cols=65 Identities=12% Similarity=0.017 Sum_probs=37.5
Q ss_pred hhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcC-CcceEecCCC-cHHHHHHHhhcCCCceeccccC
Q 019147 120 RRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEA-SPDTIRRAHAVHPITAVQLEWS 187 (345)
Q Consensus 120 ~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G-~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~~~n 187 (345)
+.++....|++++...-+..... +.++.+++.+ .++-|.+++. +.....++.+..-.+++.-+++
T Consensus 37 ~~~~~~~~d~iiid~~~~~~~~~---~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~ 103 (112)
T PF00072_consen 37 ELLKKHPPDLIIIDLELPDGDGL---ELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFS 103 (112)
T ss_dssp HHHHHSTESEEEEESSSSSSBHH---HHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEESSSS
T ss_pred HHhcccCceEEEEEeeecccccc---ccccccccccccccEEEecCCCCHHHHHHHHHCCCCEEEECCCC
Confidence 33333459999998665544444 4445555555 6777777754 4456666665544444444433
No 210
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=28.06 E-value=5.2e+02 Score=24.45 Aligned_cols=136 Identities=11% Similarity=0.059 Sum_probs=77.9
Q ss_pred CCCCeEEEeeccccccCc----c--ccccCCCHHHHHHHHHHHHhhcCCCceeEEEeecC-CCCCCHHHHHHHHHHHHHc
Q 019147 82 PRENIQVATKFGFVELGF----T--SVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRV-DTSVPIEETIGEMKKLVEE 154 (345)
Q Consensus 82 ~R~~~~I~tK~~~~~~~~----~--~~~~~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~-~~~~~~~~~~~~l~~l~~~ 154 (345)
.|..+.|+|.+|....-. + ......+++.|..++....+.++. .++-+.+-.. ++....+.+.++++.+.+.
T Consensus 99 ~r~t~cvSsqvGC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~~~-~~~~IvfmGmGEPlln~~~v~~~i~~l~~~ 177 (345)
T PRK14457 99 KRLTVCVSSQVGCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDMQR-RVSHVVFMGMGEPLLNIDEVLAAIRCLNQD 177 (345)
T ss_pred CCCEEEEeCCCCCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHhcC-CCCEEEEEecCccccCHHHHHHHHHHHhcc
Confidence 366788888887644311 1 122357899999999988877753 3565555443 3444567789999998875
Q ss_pred -CC-cceEecCCCc-HHHHHHHhhcC------CCceeccccCcccccc------------c----ccchhHHHHhCCeEE
Q 019147 155 -GK-IKYIGLSEAS-PDTIRRAHAVH------PITAVQLEWSLWARDI------------E----NEIVPLCRELGIGIV 209 (345)
Q Consensus 155 -G~-ir~iGvS~~~-~~~l~~~~~~~------~~~~~q~~~n~~~~~~------------~----~~~~~~~~~~gi~v~ 209 (345)
|. .|.|-+|+.. +..+.++.+.. ....+.+.+|..+... - ..+.+++.+.|-.|.
T Consensus 178 ~~i~~r~itvST~G~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr~I~ 257 (345)
T PRK14457 178 LGIGQRRITVSTVGVPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGRRVS 257 (345)
T ss_pred cCCccCceEEECCCchhhHHHHHhhhhhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCCEEE
Confidence 43 3566666642 34556655432 1122444444333210 0 233355566677777
Q ss_pred eecCCCCcc
Q 019147 210 PYCPLGRGF 218 (345)
Q Consensus 210 a~spl~~G~ 218 (345)
..-||-.|+
T Consensus 258 iey~LIpGv 266 (345)
T PRK14457 258 FEYILLGGV 266 (345)
T ss_pred EEEEEECCc
Confidence 666665554
No 211
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=27.95 E-value=2.5e+02 Score=24.88 Aligned_cols=113 Identities=11% Similarity=0.061 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhc-----CCCCCeEEEeeccccccCccccccCCCHHHHHHHHHH
Q 019147 43 DGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE-----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEA 117 (345)
Q Consensus 43 ~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~-----~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~ 117 (345)
-..+++.-++..|.+.-= |. +|..+-++|+. ++=.+.++.-+....... .......+..-+.-++.
T Consensus 44 Lsqr~~YG~L~~g~~v~y----vs---Te~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~--~~~~~~~~~~~~~~L~~ 114 (235)
T COG2874 44 LSQRFAYGFLMNGYRVTY----VS---TELTVREFIKQMESLSYDVSDFLLSGRLLFFPVN--LEPVNWGRRSARKLLDL 114 (235)
T ss_pred HHHHHHHHHHhCCceEEE----EE---echhHHHHHHHHHhcCCCchHHHhcceeEEEEec--ccccccChHHHHHHHHH
Confidence 357778888899988653 22 67777777765 233333443333322110 00112345566666777
Q ss_pred HHhhcCCCceeEEEeecCCCC---C---CHHHHHHHHHHHHHcCCcceEecCC
Q 019147 118 SLRRLDVEYIDLYYQHRVDTS---V---PIEETIGEMKKLVEEGKIKYIGLSE 164 (345)
Q Consensus 118 SL~~Lg~d~iDl~~lH~~~~~---~---~~~~~~~~l~~l~~~G~ir~iGvS~ 164 (345)
.++....-.-|++.+...+.- . ...+.+..++.|.++||+--+-+.-
T Consensus 115 l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp 167 (235)
T COG2874 115 LLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHP 167 (235)
T ss_pred HHhhHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEeCh
Confidence 777777777899999887542 1 2334577778888999988777654
No 212
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.88 E-value=6.4e+02 Score=26.39 Aligned_cols=101 Identities=12% Similarity=0.100 Sum_probs=68.8
Q ss_pred CCHHHHHHHHHHHHHCCCCeeecC--CCCCCCcHHHHHHHHHhcCCCCCeEEEe--eccccccCcccc---c--cCC--C
Q 019147 39 LSEEDGISIIKHAFSKGITFFDTA--DKYGPYTNEILLGKALKELPRENIQVAT--KFGFVELGFTSV---I--VKG--T 107 (345)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA--~~Yg~G~sE~~lG~al~~~~R~~~~I~t--K~~~~~~~~~~~---~--~~~--s 107 (345)
.|.++..+.++...+.|+.-|=.+ .+|-+...|..+++.+++.- ..+.|++ ++++......+. . ... -
T Consensus 136 lD~~~v~~~~~~l~~~gv~siAVs~~~S~~NP~HE~~v~eiire~~-~~i~V~~shev~p~~~~~eR~~TavlnA~L~pi 214 (674)
T COG0145 136 LDEEEVREAAAALKAAGVEAIAVSSLFSYRNPEHELRVAEIIREIG-PDIPVSLSHEVSPEIGEYERANTAVLNAYLSPI 214 (674)
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEEEecccCCcHHHHHHHHHHHHhc-CCceEEechhcchhcCcccchhhheeeeeehHH
Confidence 688999999999999999976644 46666779999999999844 6777777 887643221100 0 001 1
Q ss_pred HHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCH
Q 019147 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPI 141 (345)
Q Consensus 108 ~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~ 141 (345)
-+...++++..|+.-|.. ..++++-+.....+.
T Consensus 215 ~~~yl~~v~~~l~~~g~~-~~l~~m~sdGgl~~~ 247 (674)
T COG0145 215 LRRYLEAVKDALKERGIK-ARLMVMQSDGGLVSA 247 (674)
T ss_pred HHHHHHHHHHHHHhcCCC-ceeEEEecCCccccH
Confidence 244556677788887765 578888777554443
No 213
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=27.84 E-value=3e+02 Score=21.57 Aligned_cols=64 Identities=14% Similarity=0.204 Sum_probs=41.2
Q ss_pred CCCCeEEEeeccccccCccccccCCCHHHHHHHHHHHHhhcCC--CceeEEEeecCCCC-CCHHHHHHHHHHHHHc
Q 019147 82 PRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDV--EYIDLYYQHRVDTS-VPIEETIGEMKKLVEE 154 (345)
Q Consensus 82 ~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~Lg~--d~iDl~~lH~~~~~-~~~~~~~~~l~~l~~~ 154 (345)
.|=-+.|+-|++... ..+..+++.+.+..+.... .-.|++++..+... .+..++.+.|..|.+.
T Consensus 44 ~R~G~~VsKK~~~~A---------V~RNRiKR~lRE~~R~~~~~l~~~DiVvi~r~~~~~~~~~~l~~~l~~ll~k 110 (120)
T PRK04390 44 PRLGLVVGKKTAKRA---------VERNYMKRVIREWFRLNQHRLPPVDFVVRVQRKFDRATAKQAVAELAQLMAK 110 (120)
T ss_pred ceEEEEEecccCcch---------hhhhHHHHHHHHHHHhccccCCCceEEEEeCCCcccCCHHHHHHHHHHHHHH
Confidence 444566777754322 3467788888888765542 34699999988643 4566666666666544
No 214
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=27.67 E-value=3.2e+02 Score=26.25 Aligned_cols=90 Identities=13% Similarity=0.132 Sum_probs=59.0
Q ss_pred EEEeecCCCC-----------CCHHHHHHHHHHHH-HcCC---cceEecC--CCcHHH---HHHHhhcC---CCceeccc
Q 019147 129 LYYQHRVDTS-----------VPIEETIGEMKKLV-EEGK---IKYIGLS--EASPDT---IRRAHAVH---PITAVQLE 185 (345)
Q Consensus 129 l~~lH~~~~~-----------~~~~~~~~~l~~l~-~~G~---ir~iGvS--~~~~~~---l~~~~~~~---~~~~~q~~ 185 (345)
.+-||.+++. .+++++++++.++. +.|+ |+++=+. |.+.++ |.++++.. +..++-++
T Consensus 241 avSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLIp 320 (373)
T PRK14459 241 AVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLIP 320 (373)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEEc
Confidence 4678998653 24688999987776 4464 4455444 344444 44445444 56789999
Q ss_pred cCccccc----cc----ccchhHHHHhCCeEEeecCCCCcc
Q 019147 186 WSLWARD----IE----NEIVPLCRELGIGIVPYCPLGRGF 218 (345)
Q Consensus 186 ~n~~~~~----~~----~~~~~~~~~~gi~v~a~spl~~G~ 218 (345)
||++... +. ....+..+++||.+..+...+..+
T Consensus 321 yNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~dI 361 (373)
T PRK14459 321 LNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQEI 361 (373)
T ss_pred cCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCcCH
Confidence 9996531 11 356777889999999988776544
No 215
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=27.66 E-value=8.3e+02 Score=26.63 Aligned_cols=108 Identities=12% Similarity=0.107 Sum_probs=58.1
Q ss_pred CCCCCCcHHHHHHHHHhc----CCCCCeEEEeeccccccCccccccCCCHHHHHHHHHHHHhhc-CCCceeEEEeecCCC
Q 019147 63 DKYGPYTNEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRL-DVEYIDLYYQHRVDT 137 (345)
Q Consensus 63 ~~Yg~G~sE~~lG~al~~----~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~L-g~d~iDl~~lH~~~~ 137 (345)
-.|| .|+-|-++|++ ...+-++|.|-+.... --+.|..-+++.-++. ...-+.++.++.|+.
T Consensus 551 ~VfG---G~~~L~~~I~~~~~~~~p~~I~V~tTc~~ei----------IGDDi~~vi~~~~~~~~~~~~~pvi~v~tpgF 617 (917)
T PRK14477 551 AIFG---GWENLKQGILRVIEKFKPKVIGVMTTGLTET----------MGDDVRSAIVQFREEHPELDDVPVVWASTPDY 617 (917)
T ss_pred eEEC---cHHHHHHHHHHHHHhcCCCEEEEECCchHhh----------hhcCHHHHHHHHHhhccccCCCeEEEeeCCCC
Confidence 3677 56666677765 3455577777765321 1123333333322221 112378999999987
Q ss_pred CCCHH----HHHHHH-HHHH-----HcCCcceEecCCC---cHHHHHHHhhcCCCceec
Q 019147 138 SVPIE----ETIGEM-KKLV-----EEGKIKYIGLSEA---SPDTIRRAHAVHPITAVQ 183 (345)
Q Consensus 138 ~~~~~----~~~~~l-~~l~-----~~G~ir~iGvS~~---~~~~l~~~~~~~~~~~~q 183 (345)
..... .+++++ +.+. ..++|--||-++. +.+.++++++...+.++-
T Consensus 618 ~Gs~~~G~~~a~~aiv~~~~~~~~~~~~~VNli~~~~~~~gD~~eik~lL~~~Gl~v~~ 676 (917)
T PRK14477 618 CGSLQEGYAAAVEAIVATLPEPGERIPGQVNILPGAHLTPADVEEIKEIVEAFGLDPVV 676 (917)
T ss_pred ccCHHHHHHHHHHHHHHHhccccCCCCCcEEEeCCCCCChhhHHHHHHHHHHcCCceEE
Confidence 64432 233333 2332 3467888876654 335566677766655543
No 216
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=27.60 E-value=3.1e+02 Score=21.64 Aligned_cols=63 Identities=10% Similarity=0.012 Sum_probs=44.3
Q ss_pred CCCCeEEEeeccccccCccccccCCCHHHHHHHHHHHHhhcCCC---ceeEEEeecCCCC-CCHHHHHHHHHHHHHc
Q 019147 82 PRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVE---YIDLYYQHRVDTS-VPIEETIGEMKKLVEE 154 (345)
Q Consensus 82 ~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~Lg~d---~iDl~~lH~~~~~-~~~~~~~~~l~~l~~~ 154 (345)
.|=-+.|+-|+|.- ..+..+++-+.++.+.+..+ -.|++++-.+... .+..++.+.|+.+.+.
T Consensus 48 ~R~G~~VsKKvG~A----------V~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03459 48 PRFGLVVSKAVGNA----------VIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLGK 114 (122)
T ss_pred CEEEEEEeeeccch----------hHHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHHH
Confidence 45567888887742 24677888888888777643 3699999887653 5677777777776654
No 217
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=27.46 E-value=2e+02 Score=28.19 Aligned_cols=17 Identities=6% Similarity=-0.011 Sum_probs=11.2
Q ss_pred CeEEeecCCCCcccCCC
Q 019147 206 IGIVPYCPLGRGFFGGK 222 (345)
Q Consensus 206 i~v~a~spl~~G~L~g~ 222 (345)
-.+++.+|=|.|.+.+.
T Consensus 317 ~~~iglG~gA~s~~~~~ 333 (453)
T PRK09249 317 CDLIGLGVSAISRIGDG 333 (453)
T ss_pred CeEEEECcCcccCCCCe
Confidence 56677777777776543
No 218
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=27.35 E-value=2.7e+02 Score=20.96 Aligned_cols=44 Identities=20% Similarity=0.142 Sum_probs=30.1
Q ss_pred HHHHhhcCCCceeccccCcccccccccchhHHHHhCCeEEeecCCCC
Q 019147 170 IRRAHAVHPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGR 216 (345)
Q Consensus 170 l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~ 216 (345)
++++++...+|++-+--....+ .++...|-++|+.|+.=.|++.
T Consensus 54 ~~~ll~~~~~D~V~I~tp~~~h---~~~~~~~l~~g~~v~~EKP~~~ 97 (120)
T PF01408_consen 54 LEELLADEDVDAVIIATPPSSH---AEIAKKALEAGKHVLVEKPLAL 97 (120)
T ss_dssp HHHHHHHTTESEEEEESSGGGH---HHHHHHHHHTTSEEEEESSSSS
T ss_pred HHHHHHhhcCCEEEEecCCcch---HHHHHHHHHcCCEEEEEcCCcC
Confidence 4445555566666654443222 5788899999999999889874
No 219
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=27.34 E-value=4.9e+02 Score=23.91 Aligned_cols=156 Identities=13% Similarity=0.146 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHCCCCeeecC--CC--CCCC-cHHHHHH---HHHhcCCCCCeEEEeeccccccCccccccCCCHHHHHHH
Q 019147 43 DGISIIKHAFSKGITFFDTA--DK--YGPY-TNEILLG---KALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSC 114 (345)
Q Consensus 43 ~~~~~l~~A~~~Gin~~DTA--~~--Yg~G-~sE~~lG---~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ 114 (345)
.+...+..+++.|++++|.- +. -+.| ..+..+. +++.+ .++++-|-.++.... .....++.+.+.
T Consensus 74 ~~~~~~~e~~~~Gvt~~E~~~~p~~~~~~~~~~~~~~~~~~~ai~~-~~~~~gi~~~l~~~~------~~~~~~~~~~~~ 146 (325)
T cd01320 74 LAYEYLEDAAADGVVYAEIRFSPQLHTRRGLSFDEVVEAVLRGLDE-AEAEFGIKARLILCG------LRHLSPESAQET 146 (325)
T ss_pred HHHHHHHHHHHcCCEEEEEEeCchhhccCCCCHHHHHHHHHHHHHH-HHHhcCCeEEEEEEe------cCCCCHHHHHHH
Confidence 36777888899999999842 11 0111 1333332 23332 111111111111100 001234556666
Q ss_pred HHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCCC-cHHHHHHHhhcCCCceeccccCcccccc
Q 019147 115 CEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHAVHPITAVQLEWSLWARDI 193 (345)
Q Consensus 115 ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~~~n~~~~~~ 193 (345)
++...+. +-+.+.-+-+.......+.++....++..++.|+--.+=++.. ..+.+..+++...++.+---+++ ..
T Consensus 147 ~~~~~~~-~~~~vvg~~l~~~~~~~~~~~~~~~~~~A~~~g~~v~~H~~E~~~~~~~~~a~~~~g~~~i~H~~~l---~~ 222 (325)
T cd01320 147 LELALKY-RDKGVVGFDLAGDEVGFPPEKFVRAFQRAREAGLRLTAHAGEAGGPESVRDALDLLGAERIGHGIRA---IE 222 (325)
T ss_pred HHHHHhc-cCCCEEEeecCCCCCCCCHHHHHHHHHHHHHCCCceEEeCCCCCCHHHHHHHHHHcCCcccchhhcc---Cc
Confidence 6655543 2222222223333223345667777888888876544444332 33445555542233221111111 11
Q ss_pred cccchhHHHHhCCeEE
Q 019147 194 ENEIVPLCRELGIGIV 209 (345)
Q Consensus 194 ~~~~~~~~~~~gi~v~ 209 (345)
..+.++..+++||.+.
T Consensus 223 ~~~~~~~l~~~gi~v~ 238 (325)
T cd01320 223 DPELVKRLAERNIPLE 238 (325)
T ss_pred cHHHHHHHHHcCCeEE
Confidence 2357899999999875
No 220
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=27.29 E-value=4.8e+02 Score=23.75 Aligned_cols=113 Identities=14% Similarity=0.177 Sum_probs=60.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCeeecCCCCCCCc------HHHHHHHHHhcCCCCCeEEEeeccccccCccccccCCCHHHH
Q 019147 38 PLSEEDGISIIKHAFSKGITFFDTADKYGPYT------NEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYV 111 (345)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~------sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i 111 (345)
.++.++..++++.+.+.|+..|.-. | |+ -..++. .+++..-.++.|+|-.. .+
T Consensus 39 ~ls~eei~~~i~~~~~~gi~~I~~t---G-GEPll~~~l~~iv~-~l~~~g~~~v~i~TNG~----------------ll 97 (302)
T TIGR02668 39 ELSPEEIERIVRVASEFGVRKVKIT---G-GEPLLRKDLIEIIR-RIKDYGIKDVSMTTNGI----------------LL 97 (302)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEE---C-cccccccCHHHHHH-HHHhCCCceEEEEcCch----------------HH
Confidence 3678889999999999999877632 3 31 112222 22221112455555421 11
Q ss_pred HHHHHHHHhhcCCCceeEEEeecCCC--------CCCHHHHHHHHHHHHHcCCc----ceEecCCCcHHHHHHH
Q 019147 112 RSCCEASLRRLDVEYIDLYYQHRVDT--------SVPIEETIGEMKKLVEEGKI----KYIGLSEASPDTIRRA 173 (345)
Q Consensus 112 ~~~ve~SL~~Lg~d~iDl~~lH~~~~--------~~~~~~~~~~l~~l~~~G~i----r~iGvS~~~~~~l~~~ 173 (345)
. ..-..|.+.|++.|- +-++.+++ ...++.+++.++.+++.|.- ..+.+.+.+.+++.++
T Consensus 98 ~-~~~~~l~~~g~~~v~-iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~~~g~n~~ei~~~ 169 (302)
T TIGR02668 98 E-KLAKKLKEAGLDRVN-VSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVVLKGINDNEIPDM 169 (302)
T ss_pred H-HHHHHHHHCCCCEEE-EEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHH
Confidence 1 233446666766554 33454432 12467788899998888742 2233333444554443
No 221
>PRK09358 adenosine deaminase; Provisional
Probab=27.25 E-value=5.1e+02 Score=24.06 Aligned_cols=105 Identities=14% Similarity=0.096 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCCC-cHHHHHHHhhcCCCceecccc
Q 019147 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHAVHPITAVQLEW 186 (345)
Q Consensus 108 ~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~~~ 186 (345)
++...+.+++.++...-+.+--+-++.+....+.+...+.++.+++.|.--.+=++.. +.+.+..++....++.+ ..
T Consensus 148 ~~~~~~~~~~~~~~~~~~~vvg~~l~g~e~~~~~~~~~~~~~~A~~~g~~~~~H~~E~~~~~~~~~al~~lg~~ri--~H 225 (340)
T PRK09358 148 EEAAARELEALAARYRDDGVVGFDLAGDELGFPPSKFARAFDRARDAGLRLTAHAGEAGGPESIWEALDELGAERI--GH 225 (340)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEeCCCcCCCCCHHHHHHHHHHHHHCCCCeEEcCCCCCchhHHHHHHHHcCCccc--ch
Confidence 4455556666655422122222223334333445666777888888886554444432 23445555543233321 11
Q ss_pred CcccccccccchhHHHHhCCeEEeecCCCC
Q 019147 187 SLWARDIENEIVPLCRELGIGIVPYCPLGR 216 (345)
Q Consensus 187 n~~~~~~~~~~~~~~~~~gi~v~a~spl~~ 216 (345)
..... ...++++..+++||.+. ..|...
T Consensus 226 g~~l~-~~~~~~~~l~~~gi~v~-~cP~Sn 253 (340)
T PRK09358 226 GVRAI-EDPALMARLADRRIPLE-VCPTSN 253 (340)
T ss_pred hhhhc-cCHHHHHHHHHcCCeEE-ECCCcc
Confidence 11111 12468899999999875 345443
No 222
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=27.03 E-value=5.3e+02 Score=24.14 Aligned_cols=132 Identities=17% Similarity=0.084 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHHCCCCeeecC----------CCCCCC--cHHHHHHHHHhcC---CCCCeEEEeeccccccCcccccc
Q 019147 40 SEEDGISIIKHAFSKGITFFDTA----------DKYGPY--TNEILLGKALKEL---PRENIQVATKFGFVELGFTSVIV 104 (345)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA----------~~Yg~G--~sE~~lG~al~~~---~R~~~~I~tK~~~~~~~~~~~~~ 104 (345)
+++...+..+.+.+.|+..||-- ..+|.. .+-..+.+.++.. .. ++-|+.|+-..+..
T Consensus 77 dp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~-~iPVTVKiRlG~d~------ 149 (323)
T COG0042 77 DPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVG-DIPVTVKIRLGWDD------ 149 (323)
T ss_pred CHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhC-CCCeEEEEecccCc------
Confidence 56778888888999999999942 223322 3455666666551 12 67888888644321
Q ss_pred CCCHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCH--HHHHHHHHHHHHcCC-cceEecCC-CcHHHHHHHhhcCCCc
Q 019147 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPI--EETIGEMKKLVEEGK-IKYIGLSE-ASPDTIRRAHAVHPIT 180 (345)
Q Consensus 105 ~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~--~~~~~~l~~l~~~G~-ir~iGvS~-~~~~~l~~~~~~~~~~ 180 (345)
.+.....+.+.++.-| +|.+.+|.-...... ..-|+.+.++++.=. |--||=.+ ++.+...+.++....|
T Consensus 150 ---~~~~~~~ia~~~~~~g---~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~D 223 (323)
T COG0042 150 ---DDILALEIARILEDAG---ADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGAD 223 (323)
T ss_pred ---ccccHHHHHHHHHhcC---CCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCC
Confidence 1123445666666666 778889976432211 124778888887755 55555444 7888888888887777
Q ss_pred eecc
Q 019147 181 AVQL 184 (345)
Q Consensus 181 ~~q~ 184 (345)
-+++
T Consensus 224 gVMi 227 (323)
T COG0042 224 GVMI 227 (323)
T ss_pred EEEE
Confidence 7776
No 223
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=27.02 E-value=3.3e+02 Score=21.77 Aligned_cols=62 Identities=21% Similarity=0.230 Sum_probs=43.5
Q ss_pred CCCCeEEEeeccccccCccccccCCCHHHHHHHHHHHHhhcCC----CceeEEEeecCCCC-CCHHHHHHHHHHHHH
Q 019147 82 PRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDV----EYIDLYYQHRVDTS-VPIEETIGEMKKLVE 153 (345)
Q Consensus 82 ~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~Lg~----d~iDl~~lH~~~~~-~~~~~~~~~l~~l~~ 153 (345)
.|=-+.|+-|+|.- ..+..|++.+.++++.+.. ...|++++-.+... .+..++-+.|+.+.+
T Consensus 47 ~RvG~~VSKKvG~A----------V~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 47 PRVGFTVTKKNGNA----------VERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred cEEEEEEecccCcc----------hHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 45557777777632 3478888888888887653 45899999988643 556677777766554
No 224
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.98 E-value=2.3e+02 Score=27.08 Aligned_cols=89 Identities=15% Similarity=0.176 Sum_probs=56.3
Q ss_pred EEeecCCC------------CCCHHHHHHHHHH-HHHcC---CcceEecC--CCcHHHHH---HHhhcCCCceeccccCc
Q 019147 130 YYQHRVDT------------SVPIEETIGEMKK-LVEEG---KIKYIGLS--EASPDTIR---RAHAVHPITAVQLEWSL 188 (345)
Q Consensus 130 ~~lH~~~~------------~~~~~~~~~~l~~-l~~~G---~ir~iGvS--~~~~~~l~---~~~~~~~~~~~q~~~n~ 188 (345)
+.||.++. ..+++++++++.+ +.+.| +|+++=+. |.+.+.+. +++...+..++-++||+
T Consensus 238 iSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn~ 317 (368)
T PRK14456 238 VSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYNS 317 (368)
T ss_pred EEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeecc
Confidence 56788732 2356888888875 45556 24444443 34544444 44444556788899998
Q ss_pred cccccc--------ccchhHHHHhCCeEEeecCCCCcc
Q 019147 189 WARDIE--------NEIVPLCRELGIGIVPYCPLGRGF 218 (345)
Q Consensus 189 ~~~~~~--------~~~~~~~~~~gi~v~a~spl~~G~ 218 (345)
+....- ..+.+..+++|+.+......+.-+
T Consensus 318 ~~~~~~~~ps~e~i~~F~~~L~~~Gi~vtvR~~~G~di 355 (368)
T PRK14456 318 IVNIKFEPVCSSTRERFRDRLLDAGLQVTVRKSYGTTI 355 (368)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCcch
Confidence 754311 456677788999999887776543
No 225
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=26.86 E-value=6.4e+02 Score=25.20 Aligned_cols=179 Identities=14% Similarity=0.055 Sum_probs=83.0
Q ss_pred CCHHHHHHHHHHHHHCCCCeeecCCC-CCCCcHHHHHHHHHhc-CCCCCeEEEeecccccc-----------Cc------
Q 019147 39 LSEEDGISIIKHAFSKGITFFDTADK-YGPYTNEILLGKALKE-LPRENIQVATKFGFVEL-----------GF------ 99 (345)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA~~-Yg~G~sE~~lG~al~~-~~R~~~~I~tK~~~~~~-----------~~------ 99 (345)
++.++-.++.+...+.|+.+|+.+.. .+.+ ..+.+ +.+.. ....++..-+......- ..
T Consensus 20 ~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~~-d~e~v-~~i~~~~~~~~i~al~r~~~~did~a~~al~~~~~~~v~i~~ 97 (494)
T TIGR00973 20 LTVEEKLQIALALERLGVDIIEAGFPVSSPG-DFEAV-QRIARTVKNPRVCGLARCVEKDIDAAAEALKPAEKFRIHTFI 97 (494)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEECCCCCHH-HHHHH-HHHHHhCCCCEEEEEcCCCHHhHHHHHHhccccCCCEEEEEE
Confidence 46788889888888999999996532 2221 12233 33422 22223222221100000 00
Q ss_pred -c-----ccccCCCHHHHHHHHHHHHhhcCCCceeEEEeecCCC-CCCHHHHHHHHHHHHHcCCcceEecCC----CcHH
Q 019147 100 -T-----SVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLSE----ASPD 168 (345)
Q Consensus 100 -~-----~~~~~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~-~~~~~~~~~~l~~l~~~G~ir~iGvS~----~~~~ 168 (345)
. ....+.+++.+.+.+.++.+...- +-.-+.+...|. ..+.+.+++.++.+.+.| +..|.++. ..|+
T Consensus 98 ~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~-~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~G-a~~i~l~DTvG~~~P~ 175 (494)
T TIGR00973 98 ATSPIHLEHKLKMTRDEVLERAVGMVKYAKN-FTDDVEFSCEDAGRTEIPFLARIVEAAINAG-ATTINIPDTVGYALPA 175 (494)
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHHHHH-cCCeEEEEcCCCCCCCHHHHHHHHHHHHHcC-CCEEEeCCCCCCCCHH
Confidence 0 001123445555555555544431 112244444433 245666777777777776 45677764 3455
Q ss_pred HHHHHhhc----CC-CceeccccCcccccccc--cchhHHHHhCCeEEeecCCCCcccCCC
Q 019147 169 TIRRAHAV----HP-ITAVQLEWSLWARDIEN--EIVPLCRELGIGIVPYCPLGRGFFGGK 222 (345)
Q Consensus 169 ~l~~~~~~----~~-~~~~q~~~n~~~~~~~~--~~~~~~~~~gi~v~a~spl~~G~L~g~ 222 (345)
++.++++. .+ ..-+.+.+|.=+.. .. .-.-.|-+.|+..+--+..+-|--+|+
T Consensus 176 ~~~~~i~~l~~~~~~~~~v~l~~H~HND~-GlAvANalaAv~aGa~~vd~tv~GlGERaGN 235 (494)
T TIGR00973 176 EYGNLIKGLRENVPNIDKAILSVHCHNDL-GLAVANSLAAVQNGARQVECTINGIGERAGN 235 (494)
T ss_pred HHHHHHHHHHHhhccccCceEEEEeCCCC-ChHHHHHHHHHHhCCCEEEEEeecccccccC
Confidence 55444332 11 11122333332211 10 111233456777776666666644443
No 226
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.80 E-value=4.2e+02 Score=25.11 Aligned_cols=90 Identities=13% Similarity=0.151 Sum_probs=0.0
Q ss_pred EEEeecC-----------CCCCCHHHHHHHHHHHHHcCCcc----eEecCCCcH-----HHHHHHhhcCCCceeccccCc
Q 019147 129 LYYQHRV-----------DTSVPIEETIGEMKKLVEEGKIK----YIGLSEASP-----DTIRRAHAVHPITAVQLEWSL 188 (345)
Q Consensus 129 l~~lH~~-----------~~~~~~~~~~~~l~~l~~~G~ir----~iGvS~~~~-----~~l~~~~~~~~~~~~q~~~n~ 188 (345)
.+.||.| ....+++++++++.++.++-+-+ ++=+.+.+- +.+.+++...+..++-++||.
T Consensus 215 aiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kVnLIPyN~ 294 (342)
T PRK14465 215 AISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKRRITFEYVMIPGVNMGRENANKLVKIARSLDCKINVIPLNT 294 (342)
T ss_pred EEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCCEEEEEEEEECCccCCHHHHHHHHHHHhhCCCcEEEEccCC
Q ss_pred cccccc-------ccchhHHHHhCCeEEeecCCCCcc
Q 019147 189 WARDIE-------NEIVPLCRELGIGIVPYCPLGRGF 218 (345)
Q Consensus 189 ~~~~~~-------~~~~~~~~~~gi~v~a~spl~~G~ 218 (345)
-..... ....+..+++||.+..+...+..+
T Consensus 295 ~~~~~~~ps~e~i~~F~~~L~~~Gi~v~~R~~~G~di 331 (342)
T PRK14465 295 EFFGWRRPTDDEVAEFIMLLEPAGVPILNRRSPGKDI 331 (342)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCcCh
No 227
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=26.79 E-value=5.9e+02 Score=24.60 Aligned_cols=105 Identities=16% Similarity=0.210 Sum_probs=61.2
Q ss_pred HHHHHHHHHHH-----------hhcCCCceeEEEeecCCCC-----CCHHHHHHHHHHHHHcCCcc-eEecC---CCcHH
Q 019147 109 EYVRSCCEASL-----------RRLDVEYIDLYYQHRVDTS-----VPIEETIGEMKKLVEEGKIK-YIGLS---EASPD 168 (345)
Q Consensus 109 ~~i~~~ve~SL-----------~~Lg~d~iDl~~lH~~~~~-----~~~~~~~~~l~~l~~~G~ir-~iGvS---~~~~~ 168 (345)
+.+++.++... +.++ +|++.||....+ .+.++..+..++..+.=.+- -|+=| ..+++
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~e 204 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPL 204 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHH
Confidence 55666665555 5565 778888865332 23455666666654433322 22222 46788
Q ss_pred HHHHHhhcCCC-ceeccccCcccccccccchhHHHHhCCeEEeecCCCCcc
Q 019147 169 TIRRAHAVHPI-TAVQLEWSLWARDIENEIVPLCRELGIGIVPYCPLGRGF 218 (345)
Q Consensus 169 ~l~~~~~~~~~-~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~spl~~G~ 218 (345)
.++++++...= .++-..-|.=+ + -..+.+.|+++|..+++++|..-|.
T Consensus 205 VLeaaLe~~~G~kpLL~SAt~e~-N-y~~ia~lAk~yg~~Vvv~s~~Din~ 253 (389)
T TIGR00381 205 VLEKAAEVAEGERCLLASANLDL-D-YEKIANAAKKYGHVVLSWTIMDINM 253 (389)
T ss_pred HHHHHHHHhCCCCcEEEecCchh-h-HHHHHHHHHHhCCeEEEEcCCcHHH
Confidence 88888776321 11111112110 1 2579999999999999999887554
No 228
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=26.71 E-value=2.2e+02 Score=27.62 Aligned_cols=82 Identities=9% Similarity=0.041 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhh--cCCCceeccccCccccccc-ccchhHHHHhCCeEEeecCCCCc
Q 019147 141 IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHA--VHPITAVQLEWSLWARDIE-NEIVPLCRELGIGIVPYCPLGRG 217 (345)
Q Consensus 141 ~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~--~~~~~~~q~~~n~~~~~~~-~~~~~~~~~~gi~v~a~spl~~G 217 (345)
...+...++.+.++.-|....+-....+.+.+++. ..+...+..+-|++.+-.+ ..+.+.|+++|+-++.=+.++.+
T Consensus 112 YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP 191 (396)
T COG0626 112 YGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATP 191 (396)
T ss_pred cchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccc
Confidence 55678888888888888877777777766655554 4677788889998876543 68888999999999988888888
Q ss_pred ccCCC
Q 019147 218 FFGGK 222 (345)
Q Consensus 218 ~L~g~ 222 (345)
++..+
T Consensus 192 ~~q~P 196 (396)
T COG0626 192 VLQRP 196 (396)
T ss_pred cccCh
Confidence 77543
No 229
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=26.70 E-value=2.1e+02 Score=27.59 Aligned_cols=75 Identities=12% Similarity=0.076 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHcCCcceEecCCCcHHHHHHHhhc-CCCceeccccCcccccc-cccchhHHHHhCCeEEeecCCCCc
Q 019147 143 ETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV-HPITAVQLEWSLWARDI-ENEIVPLCRELGIGIVPYCPLGRG 217 (345)
Q Consensus 143 ~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a~spl~~G 217 (345)
.++..++.+.+.+.++.+-+...+.+.+++++.. .+..++..+-|+.-+-. ..++.+.|+++|+-++.=...+.+
T Consensus 111 ~t~~~~~~~~~~~g~~v~~v~~~d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~ 187 (405)
T PRK08776 111 GSWRLFNALAKKGHFALITADLTDPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSP 187 (405)
T ss_pred HHHHHHHHHHHhcCcEEEEECCCCHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCccc
Confidence 3444455544444555555555566777666542 33344444555543321 257788888888888866665544
No 230
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=26.70 E-value=4.6e+02 Score=23.37 Aligned_cols=60 Identities=13% Similarity=0.129 Sum_probs=39.5
Q ss_pred eeccccCcccccc---cccchhHHHHhCCeEEeecCCCCcccCCCCccCCCCCccccccCCCCCCcchhhhHHHHHHHHH
Q 019147 181 AVQLEWSLWARDI---ENEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLKFFPRFNGENLDRNKSIYFRIEN 257 (345)
Q Consensus 181 ~~q~~~n~~~~~~---~~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 257 (345)
+-.+-++...... ..+-++.|++++|.++.+.|=.. -.+...++.+
T Consensus 100 iGEiGLe~~t~~E~evf~~QL~LA~e~dvPviVHTPr~n-------------------------------K~e~t~~ild 148 (254)
T COG1099 100 IGEIGLEEATDEEKEVFREQLELARELDVPVIVHTPRRN-------------------------------KKEATSKILD 148 (254)
T ss_pred eeecccccCCHHHHHHHHHHHHHHHHcCCcEEEeCCCCc-------------------------------chhHHHHHHH
Confidence 3355555444321 14568899999999999887642 1233457888
Q ss_pred HHHHcCCCHHHHHH
Q 019147 258 LAKKYKCTSAQLAL 271 (345)
Q Consensus 258 la~~~g~s~~q~al 271 (345)
++.+.|+.+.++.+
T Consensus 149 i~~~~~l~~~lvvI 162 (254)
T COG1099 149 ILIESGLKPSLVVI 162 (254)
T ss_pred HHHHcCCChhheeh
Confidence 88889888776553
No 231
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.53 E-value=4.3e+02 Score=25.08 Aligned_cols=91 Identities=12% Similarity=0.048 Sum_probs=57.2
Q ss_pred EEEeecCCCC-----------CCHHHHHHHHHHHHHcC--C--cceEecC--CCcHHHHHH---HhhcCCCceeccccCc
Q 019147 129 LYYQHRVDTS-----------VPIEETIGEMKKLVEEG--K--IKYIGLS--EASPDTIRR---AHAVHPITAVQLEWSL 188 (345)
Q Consensus 129 l~~lH~~~~~-----------~~~~~~~~~l~~l~~~G--~--ir~iGvS--~~~~~~l~~---~~~~~~~~~~q~~~n~ 188 (345)
.+-||.|+.. .+++++++++++..++. + +-|+=+. |.+.+++.+ ++...+..++-++||+
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np 289 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHA 289 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecCC
Confidence 4778988542 35688899988865443 2 2233232 555555444 4444567788999997
Q ss_pred cccc----c-c---ccchhHHHHhCCeEEeecCCCCccc
Q 019147 189 WARD----I-E---NEIVPLCRELGIGIVPYCPLGRGFF 219 (345)
Q Consensus 189 ~~~~----~-~---~~~~~~~~~~gi~v~a~spl~~G~L 219 (345)
.... + . ....+..+++||.+..+...+..+.
T Consensus 290 ~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~dI~ 328 (345)
T PRK14466 290 IPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGEDIF 328 (345)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCCchh
Confidence 4331 1 1 3556667789999998877765443
No 232
>PRK00077 eno enolase; Provisional
Probab=26.49 E-value=5.7e+02 Score=24.93 Aligned_cols=96 Identities=10% Similarity=0.056 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcC--CcceEecCC--CcHHHHHHHhhcCCCce
Q 019147 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGLSE--ASPDTIRRAHAVHPITA 181 (345)
Q Consensus 106 ~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvS~--~~~~~l~~~~~~~~~~~ 181 (345)
.+++...+.+.+.++.+ ++++|-.|-... -|+.+.+|.++- +|.-.|=-. .+++.+..+++....++
T Consensus 261 ~s~~e~~~~~~~l~e~y-----~i~~iEdPl~~~----D~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~ 331 (425)
T PRK00077 261 LTSEEMIDYLAELVDKY-----PIVSIEDGLDEN----DWEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANS 331 (425)
T ss_pred CCHHHHHHHHHHHHhhC-----CcEEEEcCCCCc----cHHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCE
Confidence 45666666666665553 577777775433 356666666653 455433332 46899999988888889
Q ss_pred eccccCcccccc-cccchhHHHHhCCeEEe
Q 019147 182 VQLEWSLWARDI-ENEIVPLCRELGIGIVP 210 (345)
Q Consensus 182 ~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a 210 (345)
+|+..|-+-.-. -.++...|+.+|+.++.
T Consensus 332 v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 332 ILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred EEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 998877543211 25788999999998664
No 233
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=26.40 E-value=4.4e+02 Score=22.98 Aligned_cols=144 Identities=11% Similarity=-0.032 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhc----CCCCCeEEEeeccccccCccccccCCCHHHHHHHH
Q 019147 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCC 115 (345)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~----~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~v 115 (345)
|.+++.++++.|++.|+...|+- +..+-.++.. ..+.+++|+--. .+.+.+++.+
T Consensus 13 D~~~~~~~l~~al~~~~~~~~ii--------~~~l~p~m~~vG~~w~~gei~vaqe~-------------~as~~~~~~l 71 (213)
T cd02069 13 IRDGIEEDTEEARQQYARPLEII--------NGPLMDGMKVVGDLFGAGKMFLPQVL-------------KSARVMKAAV 71 (213)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHHHccCCCcHHHHH-------------HHHHHHHHHH
Confidence 77899999999999997654422 2233334433 134455543221 2344455555
Q ss_pred HHHHhhcCC------CceeEEEeecCCCCCCHHHHHHHHHHHHHcCC-cceEecCCCcHHHHHHHhhcCCCceeccccCc
Q 019147 116 EASLRRLDV------EYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPDTIRRAHAVHPITAVQLEWSL 188 (345)
Q Consensus 116 e~SL~~Lg~------d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~ 188 (345)
+....++.. +.-- +++-.+..+.+--...=.-.-|+..|. |-++|.. .+++.+.+.+...+++++.+....
T Consensus 72 ~~l~~~l~~~~~~~~~~~~-vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~-vp~e~~v~~~~~~~~~~V~lS~~~ 149 (213)
T cd02069 72 AYLEPYMEKEKGENSSKGK-IVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVM-VPIEKILEAAKEHKADIIGLSGLL 149 (213)
T ss_pred HHHHHHHhhccccCCCCCe-EEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCC-CCHHHHHHHHHHcCCCEEEEccch
Confidence 555222221 1122 233333332222222222223566776 7778864 445666666666777887776554
Q ss_pred ccccc-cccchhHHHHhCC
Q 019147 189 WARDI-ENEIVPLCRELGI 206 (345)
Q Consensus 189 ~~~~~-~~~~~~~~~~~gi 206 (345)
-.... -.++++.+++.+.
T Consensus 150 ~~~~~~~~~~i~~L~~~~~ 168 (213)
T cd02069 150 VPSLDEMVEVAEEMNRRGI 168 (213)
T ss_pred hccHHHHHHHHHHHHhcCC
Confidence 33221 1577777777754
No 234
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=26.29 E-value=5.6e+02 Score=24.22 Aligned_cols=152 Identities=11% Similarity=0.010 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHHHHCCCCeeecCCCCCCCcHHH--HHHHHHhcCCCCCeEEEeeccccccCccccccCCCHHHHHHHHHH
Q 019147 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEI--LLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEA 117 (345)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~--~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~ 117 (345)
+.++..+.++.+.+.|++.|=.- .++...-++ ..=+++++.--+++.|..=.. ..++.+...+ +-+
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~~~~~~di~~i~~vR~~~G~~~~l~vDan----------~~~~~~~A~~-~~~ 210 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGPGVVRRDLKACLAVREAVGPDMRLMHDGA----------HWYSRADALR-LGR 210 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCchhHHHHHHHHHHHHHHhCCCCeEEEECC----------CCcCHHHHHH-HHH
Confidence 55677778888899999988542 222100111 112333331112333322111 1133433322 223
Q ss_pred HHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCc-HHHHHHHhhcCCCceeccccCccccc-cc
Q 019147 118 SLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEAS-PDTIRRAHAVHPITAVQLEWSLWARD-IE 194 (345)
Q Consensus 118 SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir-~iGvS~~~-~~~l~~~~~~~~~~~~q~~~n~~~~~-~~ 194 (345)
.|+.+ ++.++-.|-. .. -++.+.+|+++-.|. +.|=+-++ ..++..+++...++++|+..+.+-.- .-
T Consensus 211 ~l~~~-----~l~~iEeP~~---~~-d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~~ 281 (368)
T cd03329 211 ALEEL-----GFFWYEDPLR---EA-SISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITGA 281 (368)
T ss_pred Hhhhc-----CCCeEeCCCC---ch-hHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHHH
Confidence 34444 4445554432 22 256777888875555 22334467 88888888888889999987754221 12
Q ss_pred ccchhHHHHhCCeEEeec
Q 019147 195 NEIVPLCRELGIGIVPYC 212 (345)
Q Consensus 195 ~~~~~~~~~~gi~v~a~s 212 (345)
.++...|+++||.+..++
T Consensus 282 ~~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 282 MKTAHLAEAFGLDVELHG 299 (368)
T ss_pred HHHHHHHHHcCCEEEEEC
Confidence 578999999999997643
No 235
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=26.29 E-value=1.5e+02 Score=28.36 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=14.4
Q ss_pred ccchhHHHHhCCeEEee
Q 019147 195 NEIVPLCRELGIGIVPY 211 (345)
Q Consensus 195 ~~~~~~~~~~gi~v~a~ 211 (345)
+.+++.|+++||.|+.-
T Consensus 61 ~~~L~~~~~~gIkvI~N 77 (362)
T PF07287_consen 61 RPLLPAAAEKGIKVITN 77 (362)
T ss_pred HHHHHHHHhCCCCEEEe
Confidence 57899999999999874
No 236
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=26.23 E-value=1.9e+02 Score=25.91 Aligned_cols=84 Identities=12% Similarity=0.028 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeeccccccCccccccCCCHHHHHHHHHHHHhh
Q 019147 42 EDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRR 121 (345)
Q Consensus 42 ~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~ 121 (345)
....+.++.+-+.|++.++.++.+-. -++...-++++......+.+.|-+|.... ......+++.+.+.+++-|+.
T Consensus 84 ~~~~~yl~~~k~lGf~~IEiSdGti~-l~~~~r~~~I~~~~~~Gf~v~~EvG~K~~---~~~~~~~~~~~i~~~~~dLeA 159 (244)
T PF02679_consen 84 GKFDEYLEECKELGFDAIEISDGTID-LPEEERLRLIRKAKEEGFKVLSEVGKKDP---ESDFSLDPEELIEQAKRDLEA 159 (244)
T ss_dssp T-HHHHHHHHHHCT-SEEEE--SSS----HHHHHHHHHHHCCTTSEEEEEES-SSH---HHHTT--CCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCEEEecCCcee-CCHHHHHHHHHHHHHCCCEEeecccCCCc---hhcccCCHHHHHHHHHHHHHC
Confidence 34677888888999999998876642 25555556776655666999999985432 112234467777778888877
Q ss_pred cCCCceeEEEee
Q 019147 122 LDVEYIDLYYQH 133 (345)
Q Consensus 122 Lg~d~iDl~~lH 133 (345)
| .|.+++.
T Consensus 160 -G---A~~ViiE 167 (244)
T PF02679_consen 160 -G---ADKVIIE 167 (244)
T ss_dssp -T---ECEEEE-
T ss_pred -C---CCEEEEe
Confidence 6 4555553
No 237
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=26.14 E-value=6e+02 Score=24.48 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=18.9
Q ss_pred ccchhHHHHhCCeEEeecCCCCcccCC
Q 019147 195 NEIVPLCRELGIGIVPYCPLGRGFFGG 221 (345)
Q Consensus 195 ~~~~~~~~~~gi~v~a~spl~~G~L~g 221 (345)
.++.+.|++|||.|++-.--+-=.+.|
T Consensus 181 ~~i~elc~kh~v~VISDEIHaDlv~~g 207 (388)
T COG1168 181 RKIAELCLRHGVRVISDEIHADLVLGG 207 (388)
T ss_pred HHHHHHHHHcCCEEEeecccccccccC
Confidence 578889999999998754444334455
No 238
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.86 E-value=4.8e+02 Score=24.71 Aligned_cols=91 Identities=12% Similarity=0.158 Sum_probs=57.1
Q ss_pred EEeecCCCC-----------CCHHHHHHHHHHHHHcC--C--cceEecC--CCcHHHHHHHh---hcCCCceeccccCcc
Q 019147 130 YYQHRVDTS-----------VPIEETIGEMKKLVEEG--K--IKYIGLS--EASPDTIRRAH---AVHPITAVQLEWSLW 189 (345)
Q Consensus 130 ~~lH~~~~~-----------~~~~~~~~~l~~l~~~G--~--ir~iGvS--~~~~~~l~~~~---~~~~~~~~q~~~n~~ 189 (345)
+-+|.++.. .+++++++++.+..+.+ . ++++=+. |.+.+.+.++. ...+..++-++||+.
T Consensus 211 iSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlIPyn~~ 290 (349)
T PRK14463 211 VSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLIPFNEH 290 (349)
T ss_pred EeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEEecCCC
Confidence 568888542 23567788887776654 2 3344444 45556555544 445567888999986
Q ss_pred ccc----cc----ccchhHHHHhCCeEEeecCCCCcccC
Q 019147 190 ARD----IE----NEIVPLCRELGIGIVPYCPLGRGFFG 220 (345)
Q Consensus 190 ~~~----~~----~~~~~~~~~~gi~v~a~spl~~G~L~ 220 (345)
... +. ..+.+..+++||.+..+...+..+..
T Consensus 291 ~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~~~G~di~a 329 (349)
T PRK14463 291 EGCDFRSPTQEAIDRFHKYLLDKHVTVITRSSRGSDISA 329 (349)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcchhh
Confidence 431 11 35566778899999998887655443
No 239
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=25.69 E-value=4.4e+02 Score=23.68 Aligned_cols=105 Identities=18% Similarity=0.177 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHHHHHHhhcCCCceeEEEee-cCCCCCCHHHHHHHHHHHHHcCC-cceEecCCCcHHHHHHHhhcCC---
Q 019147 104 VKGTPEYVRSCCEASLRRLDVEYIDLYYQH-RVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPDTIRRAHAVHP--- 178 (345)
Q Consensus 104 ~~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH-~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~--- 178 (345)
..++.+...+-++. |.++|+++|.+-+.- ++++ ++.++.+.+... ++..+++......++.+.+...
T Consensus 15 ~~~~~~~k~~i~~~-L~~~Gv~~iEvg~~~~~~~~-------~~~~~~l~~~~~~~~~~~l~r~~~~~v~~a~~~~~~~~ 86 (268)
T cd07940 15 VSLTPEEKLEIARQ-LDELGVDVIEAGFPAASPGD-------FEAVKRIAREVLNAEICGLARAVKKDIDAAAEALKPAK 86 (268)
T ss_pred CCCCHHHHHHHHHH-HHHcCCCEEEEeCCCCCHHH-------HHHHHHHHHhCCCCEEEEEccCCHhhHHHHHHhCCCCC
Q ss_pred CceeccccCc--------cccccc------ccchhHHHHhCCeEEeecCCCC
Q 019147 179 ITAVQLEWSL--------WARDIE------NEIVPLCRELGIGIVPYCPLGR 216 (345)
Q Consensus 179 ~~~~q~~~n~--------~~~~~~------~~~~~~~~~~gi~v~a~spl~~ 216 (345)
++.+.+.+++ +....+ .+.+++++++|+.+.-..+.+.
T Consensus 87 ~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~ 138 (268)
T cd07940 87 VDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDAT 138 (268)
T ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCC
No 240
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=25.69 E-value=4.6e+02 Score=23.02 Aligned_cols=135 Identities=13% Similarity=0.078 Sum_probs=70.4
Q ss_pred HHHHHHCCCCeeec-CCCCCCCcHHHHHHHHHhcCCCCCeEEEeeccccccCccccccCCCHHHHHHHHHHHHhhcCCCc
Q 019147 48 IKHAFSKGITFFDT-ADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEY 126 (345)
Q Consensus 48 l~~A~~~Gin~~DT-A~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~Lg~d~ 126 (345)
|+...+. .|.++. +..|+.- +++.+.+|.+. ..+++..+-|+.....-. ..-....+.+.+.+-+.++-|| +.
T Consensus 12 L~~Ya~~-F~~VEvn~TFY~~P-~~~t~~~W~~~-~p~~F~F~vK~~~~iTH~--~~l~~~~~~~~~~F~~~~~~L~-~k 85 (230)
T PF01904_consen 12 LAYYARH-FNTVEVNSTFYRIP-SPETVARWREQ-TPEGFRFSVKAPQLITHE--RRLRDCAEELWRRFLEALEPLG-EK 85 (230)
T ss_dssp HHHHCCT--SEEEE-HHCCSSS--HHHHHHHHCT-S-TT-EEEEE--CCCCCC--CHCGSSHHHHHHHHHHHCHHHH-T-
T ss_pred HHHHHHh-CCeEEECcccCCCC-CHHHHHHHHhh-CCCCeEEEEeccHHheec--ccccccHHHHHHHHHHHHHHHh-hc
Confidence 4444443 565554 4456643 67788888876 678999999997543110 0011235666566666999999 99
Q ss_pred eeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhhcCCCceeccccCcccccccccchhHHHHhCC
Q 019147 127 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRELGI 206 (345)
Q Consensus 127 iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi 206 (345)
+..+++.-|..-..-.+.++.|..+.+.-. ....-++.+.---+. ..+++++++++|+
T Consensus 86 lg~iL~Q~Ppsf~~~~~~~~~l~~~l~~~~-------------------~~~~~avE~R~~sW~---~~~~~~~l~~~~~ 143 (230)
T PF01904_consen 86 LGPILFQFPPSFRFTPENLERLDAFLDRLP-------------------RGFRYAVEFRHPSWF---TEEVFELLREHGV 143 (230)
T ss_dssp EEEEEEE--TT--S-HHHHHHHHHHHHHTT--------------------TS-EEEE--BGGGG---CHHHHHHHHHTT-
T ss_pred ceEEEEEcCCCcCCCHHHHHHHHHHHhhcc-------------------cccceEEecCCcchh---hHHHHHHHHHcCC
Confidence 999999988753334455666655554422 011223333322222 2467888888888
Q ss_pred eEEe
Q 019147 207 GIVP 210 (345)
Q Consensus 207 ~v~a 210 (345)
..+.
T Consensus 144 ~~v~ 147 (230)
T PF01904_consen 144 ALVI 147 (230)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7664
No 241
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=25.65 E-value=1.5e+02 Score=20.40 Aligned_cols=17 Identities=12% Similarity=0.440 Sum_probs=15.0
Q ss_pred HHHHHHHHcCCCHHHHH
Q 019147 254 RIENLAKKYKCTSAQLA 270 (345)
Q Consensus 254 ~l~~la~~~g~s~~q~a 270 (345)
.+.+||+++|++..++-
T Consensus 24 ~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIR 40 (60)
T ss_pred cHHHHHHHHCCCHHHHH
Confidence 68899999999998865
No 242
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=25.52 E-value=68 Score=20.70 Aligned_cols=21 Identities=24% Similarity=0.059 Sum_probs=13.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHH
Q 019147 253 FRIENLAKKYKCTSAQLALAW 273 (345)
Q Consensus 253 ~~l~~la~~~g~s~~q~al~~ 273 (345)
+.++.+.++.|+|..++|-..
T Consensus 5 ~~l~~~r~~~gltq~~lA~~~ 25 (58)
T TIGR03070 5 MLVRARRKALGLTQADLADLA 25 (58)
T ss_pred HHHHHHHHHcCCCHHHHHHHh
Confidence 356666677777777777443
No 243
>PRK08508 biotin synthase; Provisional
Probab=25.42 E-value=5.1e+02 Score=23.48 Aligned_cols=22 Identities=23% Similarity=0.025 Sum_probs=17.7
Q ss_pred CCHHHHHHHHHHHHHCCCCeee
Q 019147 39 LSEEDGISIIKHAFSKGITFFD 60 (345)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~D 60 (345)
.+.+++.+.++.|.+.|++-|-
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~ 61 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFC 61 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEE
Confidence 4778888888889999997653
No 244
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=25.37 E-value=2.3e+02 Score=25.38 Aligned_cols=73 Identities=21% Similarity=0.147 Sum_probs=48.2
Q ss_pred HHHHHHHHHHcCCcceEecCCCcHHHHHHHhhcCCCceeccccCcccc-cccccchhHHHHhCCeEEeecCCCCc
Q 019147 144 TIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWAR-DIENEIVPLCRELGIGIVPYCPLGRG 217 (345)
Q Consensus 144 ~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~-~~~~~~~~~~~~~gi~v~a~spl~~G 217 (345)
-++.+.++. .+.=-+.|=|-++...+..+++....+++|+....+-. ..-.++.+.|+.+|+.++..+-+..+
T Consensus 166 d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi~~~~~~~~es~ 239 (263)
T cd03320 166 DLAELRRLA-AGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARGIPAVVSSALESS 239 (263)
T ss_pred HHHHHHHhh-cCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcCCCEEEEcchhhH
Confidence 355666665 33333556566777778888887778888887664321 11257899999999999876555443
No 245
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=25.14 E-value=3.2e+02 Score=24.38 Aligned_cols=51 Identities=14% Similarity=0.107 Sum_probs=31.4
Q ss_pred ccchhHHHHhCCeEEeecCCCCcccCCCCccCCCCCccccccCCCCCCcchhhhHHHHHHHHHHHHHcCC
Q 019147 195 NEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLKFFPRFNGENLDRNKSIYFRIENLAKKYKC 264 (345)
Q Consensus 195 ~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~ 264 (345)
...++.|++.|+.++...... .. .. + .....++...+.+..+.++|+++|+
T Consensus 97 ~~~i~~a~~lG~~~v~~~~~~--~~---~~-------------~-~~~~~~~~~~~~l~~l~~~a~~~gv 147 (284)
T PRK13210 97 KKAIRLAQDLGIRTIQLAGYD--VY---YE-------------E-KSEETRQRFIEGLAWAVEQAAAAQV 147 (284)
T ss_pred HHHHHHHHHhCCCEEEECCcc--cc---cc-------------c-ccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 578999999999998742111 00 00 0 0112345556677788888888876
No 246
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=24.97 E-value=2.6e+02 Score=24.99 Aligned_cols=58 Identities=14% Similarity=0.144 Sum_probs=34.3
Q ss_pred EecCCC-----cHHHHHHHhhcCCCceeccccCc-------ccccccccchhHHHHhCCeEEeecCCCCc
Q 019147 160 IGLSEA-----SPDTIRRAHAVHPITAVQLEWSL-------WARDIENEIVPLCRELGIGIVPYCPLGRG 217 (345)
Q Consensus 160 iGvS~~-----~~~~l~~~~~~~~~~~~q~~~n~-------~~~~~~~~~~~~~~~~gi~v~a~spl~~G 217 (345)
||+|++ +.++.-+.++...++.+++..+. +.......+.+.++++|+.+.++.|...+
T Consensus 3 lg~~t~~~~~~~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~~ 72 (275)
T PRK09856 3 TGMFTCGHQRLPIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETNG 72 (275)
T ss_pred eeeeehhheeCCHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCcccC
Confidence 555553 34444444555667777763221 11111256788899999999988876543
No 247
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=24.87 E-value=5.3e+02 Score=25.12 Aligned_cols=62 Identities=13% Similarity=-0.029 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHHhhcCCCceeEEEeecCCCC------CC-HH---HHH-HHHHHHHHcCCcceEecCCCcHH
Q 019147 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS------VP-IE---ETI-GEMKKLVEEGKIKYIGLSEASPD 168 (345)
Q Consensus 105 ~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~------~~-~~---~~~-~~l~~l~~~G~ir~iGvS~~~~~ 168 (345)
..+.+.+.+.++..+ +|+.++|.+|.+.-.... .+ .+ +.+ .+.+.|.+.|- +.+++++|...
T Consensus 204 ~qt~e~~~~~l~~~~-~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy-~~yei~~far~ 276 (430)
T PRK08208 204 GQTHASWMESLDQAL-VYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGY-TQTSMRMFRRN 276 (430)
T ss_pred CCCHHHHHHHHHHHH-hCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCC-eEEeecceecC
Confidence 356788888888776 589999999987532211 01 11 123 34566777786 45899988753
No 248
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=24.85 E-value=4.2e+02 Score=25.19 Aligned_cols=97 Identities=16% Similarity=0.180 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCC-cceEecCCCcHHHHHHHhhcCCCceec
Q 019147 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPDTIRRAHAVHPITAVQ 183 (345)
Q Consensus 105 ~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~q 183 (345)
.++.+...+ +-+.|.++|+++|.+- +|.. -+.-++.++.+.+.+. .+..+++....+.++.+.+. .++.+.
T Consensus 19 ~~s~~~k~~-ia~~L~~~Gv~~IEvG---~p~~---~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~-g~~~i~ 90 (365)
T TIGR02660 19 AFTAAEKLA-IARALDEAGVDELEVG---IPAM---GEEERAVIRAIVALGLPARLMAWCRARDADIEAAARC-GVDAVH 90 (365)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEEe---CCCC---CHHHHHHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcC-CcCEEE
Confidence 355555444 5666999999999884 3432 1233666777776643 66677777778888887764 233333
Q ss_pred cccCccc--------cccc------ccchhHHHHhCCeEE
Q 019147 184 LEWSLWA--------RDIE------NEIVPLCRELGIGIV 209 (345)
Q Consensus 184 ~~~n~~~--------~~~~------~~~~~~~~~~gi~v~ 209 (345)
+....-+ ...+ .+.+++++++|+.+.
T Consensus 91 i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~ 130 (365)
T TIGR02660 91 ISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130 (365)
T ss_pred EEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 3322211 1111 367889999998765
No 249
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=24.84 E-value=3.8e+02 Score=26.12 Aligned_cols=102 Identities=16% Similarity=0.247 Sum_probs=64.6
Q ss_pred HHHHHHHHCCCCeeecCCCCCC-CcHHHHHHHHHhcCCCCCeEEEeeccccccCccccccCCCHHHHHHHHHHHHhhcCC
Q 019147 46 SIIKHAFSKGITFFDTADKYGP-YTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDV 124 (345)
Q Consensus 46 ~~l~~A~~~Gin~~DTA~~Yg~-G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~Lg~ 124 (345)
.+|.++++.|- +-..=.||+ |.--..|.+.|...-.-.+.-.+-+ ..+.+.+++.+|++.+.++.
T Consensus 37 ~~lrr~v~~~~--l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv------------~~gvkdlr~i~e~a~~~~~~ 102 (436)
T COG2256 37 KPLRRAVEAGH--LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV------------TSGVKDLREIIEEARKNRLL 102 (436)
T ss_pred chHHHHHhcCC--CceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc------------cccHHHHHHHHHHHHHHHhc
Confidence 56788888762 223335664 5555678888875222222211111 13468899999999888886
Q ss_pred CceeEEEe---ecCCCCCCHHHHHHHHHHHHHcCCcceEecCCCc
Q 019147 125 EYIDLYYQ---HRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 166 (345)
Q Consensus 125 d~iDl~~l---H~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~ 166 (345)
.+==+++| |+.+.. .=++|--.++.|.|-.||.++-+
T Consensus 103 gr~tiLflDEIHRfnK~-----QQD~lLp~vE~G~iilIGATTEN 142 (436)
T COG2256 103 GRRTILFLDEIHRFNKA-----QQDALLPHVENGTIILIGATTEN 142 (436)
T ss_pred CCceEEEEehhhhcChh-----hhhhhhhhhcCCeEEEEeccCCC
Confidence 55555555 554432 35667788999999999998744
No 250
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=24.66 E-value=3.6e+02 Score=23.04 Aligned_cols=97 Identities=16% Similarity=0.206 Sum_probs=55.8
Q ss_pred HHHHHHHHHHhhcCCCc--eeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcH--HHHHHHhhcCCCceeccc
Q 019147 110 YVRSCCEASLRRLDVEY--IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASP--DTIRRAHAVHPITAVQLE 185 (345)
Q Consensus 110 ~i~~~ve~SL~~Lg~d~--iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~--~~l~~~~~~~~~~~~q~~ 185 (345)
.....+.+.|++.+... +=+-+-. .............++.|++.|- .+.+.++.. ..+..+ ...+++.+=+.
T Consensus 100 ~~~~~l~~~l~~~~~~~~~lvlei~e-~~~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~l-~~l~~d~iKld 175 (241)
T smart00052 100 DLVPRVLELLEETGLPPQRLELEITE-SVLLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLSYL-KRLPVDLLKID 175 (241)
T ss_pred hHHHHHHHHHHHcCCCHHHEEEEEeC-hhhhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHHH-HhCCCCeEEEC
Confidence 34455667777766542 2222211 1112234445688999999997 567776643 223333 33456666555
Q ss_pred cCccccc--------ccccchhHHHHhCCeEEe
Q 019147 186 WSLWARD--------IENEIVPLCRELGIGIVP 210 (345)
Q Consensus 186 ~n~~~~~--------~~~~~~~~~~~~gi~v~a 210 (345)
.+++..- .-+.++..|+..|+.+++
T Consensus 176 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via 208 (241)
T smart00052 176 KSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVA 208 (241)
T ss_pred HHHHhhhccChhHHHHHHHHHHHHHHCCCeEEE
Confidence 4443221 125678899999999987
No 251
>PLN02540 methylenetetrahydrofolate reductase
Probab=24.64 E-value=7.6e+02 Score=25.21 Aligned_cols=150 Identities=14% Similarity=0.144 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhcCCCC-CeEEEeeccccccCccccccCCCHHHHHHHHHHHHh
Q 019147 42 EDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRE-NIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLR 120 (345)
Q Consensus 42 ~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~R~-~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~ 120 (345)
+...+.++.-.+.|-.|+|....=|...++..+.-+..- .++ .+-..--+. ..+.+...+...+++. +
T Consensus 15 ~nL~~~~~rl~~~~P~FisVT~gAgGst~~~Tl~la~~l-q~~~Gie~i~HLT---------Crd~n~~~L~~~L~~a-~ 83 (565)
T PLN02540 15 DNLFERMDRMVAHGPLFCDITWGAGGSTADLTLDIANRM-QNMICVETMMHLT---------CTNMPVEKIDHALETI-K 83 (565)
T ss_pred HHHHHHHHHHhccCCCEEEeCCCCCCCcHHHHHHHHHHH-HHhcCCCeeEEee---------ecCCCHHHHHHHHHHH-H
Confidence 445566666778899999987554444556555444321 111 111111111 1134566777766665 7
Q ss_pred hcCCCceeEEEeecCCCC---------CCHHHHHHHHHHHHHc-CCcceEecCCCcH------------------HHHHH
Q 019147 121 RLDVEYIDLYYQHRVDTS---------VPIEETIGEMKKLVEE-GKIKYIGLSEASP------------------DTIRR 172 (345)
Q Consensus 121 ~Lg~d~iDl~~lH~~~~~---------~~~~~~~~~l~~l~~~-G~ir~iGvS~~~~------------------~~l~~ 172 (345)
.+|+. .++.|....+. ..+..+.+-++..++. |..-.|||+.++. ..+..
T Consensus 84 ~~GIr--NILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~gd~f~IgVAGYPEgHpe~~~~~~~~~~~~~~~dl~~ 161 (565)
T PLN02540 84 SNGIQ--NILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDVIGGDGLATPEAYQKDLAY 161 (565)
T ss_pred HCCCC--EEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCCCCceEEEeCCCCCCCcccccccccCCCChHHHHHH
Confidence 88866 45555433221 1123345555555554 5566788886532 23444
Q ss_pred Hhhc----CCCceeccccCcccccccccchhHHHHhCCe
Q 019147 173 AHAV----HPITAVQLEWSLWARDIENEIVPLCRELGIG 207 (345)
Q Consensus 173 ~~~~----~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~ 207 (345)
+.++ ..+-+-|+-|+. +.-.+.++.|++.||.
T Consensus 162 Lk~KvdAGAdFiITQlfFD~---d~f~~f~~~~r~~Gi~ 197 (565)
T PLN02540 162 LKEKVDAGADLIITQLFYDT---DIFLKFVNDCRQIGIT 197 (565)
T ss_pred HHHHHHcCCCEEeeccccCH---HHHHHHHHHHHhcCCC
Confidence 3333 345566776664 2224778889999843
No 252
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.63 E-value=1.6e+02 Score=25.63 Aligned_cols=87 Identities=10% Similarity=0.151 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCC-CcHHHHHHHhhcCCCceecccc
Q 019147 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQLEW 186 (345)
Q Consensus 108 ~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~ 186 (345)
++...+ +-+.|-+-|+.-|-+=+ -. .+..+.+++++++..=-.||.-+ .+.++++.+++..- +++ .
T Consensus 15 ~~~a~~-ia~al~~gGi~~iEit~---~t-----p~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA-~Fi---v 81 (201)
T PRK06015 15 VEHAVP-LARALAAGGLPAIEITL---RT-----PAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGS-RFI---V 81 (201)
T ss_pred HHHHHH-HHHHHHHCCCCEEEEeC---CC-----ccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCC-CEE---E
Confidence 444443 34455556655444322 11 12455666666553324588876 68888888877632 221 2
Q ss_pred CcccccccccchhHHHHhCCeEEe
Q 019147 187 SLWARDIENEIVPLCRELGIGIVP 210 (345)
Q Consensus 187 n~~~~~~~~~~~~~~~~~gi~v~a 210 (345)
++ ....+++++|+++||.++.
T Consensus 82 SP---~~~~~vi~~a~~~~i~~iP 102 (201)
T PRK06015 82 SP---GTTQELLAAANDSDVPLLP 102 (201)
T ss_pred CC---CCCHHHHHHHHHcCCCEeC
Confidence 22 2236899999999999885
No 253
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=24.59 E-value=4e+02 Score=22.91 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=15.3
Q ss_pred ccchhHHHHhCCeEEeecC
Q 019147 195 NEIVPLCRELGIGIVPYCP 213 (345)
Q Consensus 195 ~~~~~~~~~~gi~v~a~sp 213 (345)
.++++.++++|+.|.+|.+
T Consensus 189 ~~~v~~~~~~g~~v~~wTv 207 (229)
T cd08562 189 EEQVKALKDAGYKLLVYTV 207 (229)
T ss_pred HHHHHHHHHCCCEEEEEeC
Confidence 4688889999999988854
No 254
>PRK05588 histidinol-phosphatase; Provisional
Probab=24.37 E-value=5e+02 Score=23.01 Aligned_cols=106 Identities=14% Similarity=0.153 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHCCCCeeecCCCCCCC-----cHHHHHHHHHhc---CCCCCeEEEeeccccccCccccccCCCHHHHHH
Q 019147 42 EDGISIIKHAFSKGITFFDTADKYGPY-----TNEILLGKALKE---LPRENIQVATKFGFVELGFTSVIVKGTPEYVRS 113 (345)
Q Consensus 42 ~~~~~~l~~A~~~Gin~~DTA~~Yg~G-----~sE~~lG~al~~---~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~ 113 (345)
....+.++.|.+.|+..+ .+++.... .-..-+-+.+++ ...-++.+-.-++ ..++ ...
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~~~i~~~~~~~I~~GiE~~------------~~~~-~~~ 81 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYFNKYSKYRNNKLLLGIELG------------MEKD-LIE 81 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHHHHHHHHhcCCcceEEEec------------ccCC-CHH
Confidence 447799999999999998 77663110 000011122222 1122333333332 1122 245
Q ss_pred HHHHHHhhcCCCceeEEEeecCCCCC----------CHHHH----HHHHHHHHH-cCCcceEec
Q 019147 114 CCEASLRRLDVEYIDLYYQHRVDTSV----------PIEET----IGEMKKLVE-EGKIKYIGL 162 (345)
Q Consensus 114 ~ve~SL~~Lg~d~iDl~~lH~~~~~~----------~~~~~----~~~l~~l~~-~G~ir~iGv 162 (345)
.+++.|++...||+ +.-+|+.+... +.+++ ++.+.++++ .|++.-+|=
T Consensus 82 ~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlgH 144 (255)
T PRK05588 82 ENKELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLGH 144 (255)
T ss_pred HHHHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCccC
Confidence 56778888887877 78889864211 22332 356666665 466655543
No 255
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=24.35 E-value=1.4e+02 Score=27.43 Aligned_cols=116 Identities=15% Similarity=0.124 Sum_probs=63.2
Q ss_pred HHHHHHHc--CCcceEecCCCcHHHHHHHhhc---CCCceeccccCccccc---ccccchhHHHHhCCeEEeecCCCCcc
Q 019147 147 EMKKLVEE--GKIKYIGLSEASPDTIRRAHAV---HPITAVQLEWSLWARD---IENEIVPLCRELGIGIVPYCPLGRGF 218 (345)
Q Consensus 147 ~l~~l~~~--G~ir~iGvS~~~~~~l~~~~~~---~~~~~~q~~~n~~~~~---~~~~~~~~~~~~gi~v~a~spl~~G~ 218 (345)
.++.+... .++-.+--.+++.+.+.++.+. .-+......+|-+... .+..+.+++++-++-++. +|.
T Consensus 145 ~~~~l~~~~~~kv~vvsQTT~~~~~~~~i~~~l~~~~~~~~~~~~nTIC~aT~~RQ~a~~~La~~vD~miVI-----Gg~ 219 (281)
T PF02401_consen 145 DVEKLPISDPKKVAVVSQTTQSVEKFEEIVEALKKRFPELEGPVFNTICYATQNRQEAARELAKEVDAMIVI-----GGK 219 (281)
T ss_dssp HHHHGGGSSTTCEEEEE-TTS-HHHHHHHHHHHHHHSTCEE-SCC-S--CHHHHHHHHHHHHHCCSSEEEEE-----S-T
T ss_pred hhcccCCCCCCeEEEEEeecccHHHHHHHHHHHHHhCccccCCCCCCCCHhHHHHHHHHHHHHhhCCEEEEe-----cCC
Confidence 34444433 3666666678888766665443 1122222233333321 135777788877766654 221
Q ss_pred cCCCCccCCCCCccccccCCCCCCcchhhhHHHHHHHHHHHHHcCC------CHHHHHHHHHHhcCCCeEecCCCCCHHh
Q 019147 219 FGGKAVVESVPLDSFLKFFPRFNGENLDRNKSIYFRIENLAKKYKC------TSAQLALAWVLAQGEDVVPIPGTTKIKN 292 (345)
Q Consensus 219 L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~------s~~q~al~~~l~~~~v~~vi~g~~~~~~ 292 (345)
-+ .--.+|.++|++++. ++.++...|+-.... ..+..|+|+|+.
T Consensus 220 ~S-----------------------------sNT~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~~-VGItaGASTP~~ 269 (281)
T PF02401_consen 220 NS-----------------------------SNTRKLAEIAKEHGKPTYHIETADELDPEWLKGVKK-VGITAGASTPDW 269 (281)
T ss_dssp T------------------------------HHHHHHHHHHHHCTTCEEEESSGGG--HHHHTT-SE-EEEEE-TTS-HH
T ss_pred CC-----------------------------ccHHHHHHHHHHhCCCEEEeCCccccCHhHhCCCCE-EEEEccCCCCHH
Confidence 10 011389999999884 689999999988763 577899999998
Q ss_pred HHHhh
Q 019147 293 LDDNI 297 (345)
Q Consensus 293 l~enl 297 (345)
+-+.+
T Consensus 270 ii~eV 274 (281)
T PF02401_consen 270 IIEEV 274 (281)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 86653
No 256
>PRK15108 biotin synthase; Provisional
Probab=24.31 E-value=6.1e+02 Score=23.92 Aligned_cols=106 Identities=8% Similarity=-0.022 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHHhhcCCCceeEEEeecCCC-CCCHHHHHHHHHHHHHcCCcceEecCC--CcHHHHHHHhhcC-----
Q 019147 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLSE--ASPDTIRRAHAVH----- 177 (345)
Q Consensus 106 ~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~-~~~~~~~~~~l~~l~~~G~ir~iGvS~--~~~~~l~~~~~~~----- 177 (345)
.+++.|.+.++. ...+|+..+- +...+..+ ...++.+.+.++.+++.|. .+.+|+ .+.+.++++.+.+
T Consensus 76 ls~eEI~~~a~~-~~~~G~~~i~-i~~~g~~p~~~~~e~i~~~i~~ik~~~i--~v~~s~G~ls~e~l~~LkeAGld~~n 151 (345)
T PRK15108 76 MEVEQVLESARK-AKAAGSTRFC-MGAAWKNPHERDMPYLEQMVQGVKAMGL--ETCMTLGTLSESQAQRLANAGLDYYN 151 (345)
T ss_pred CCHHHHHHHHHH-HHHcCCCEEE-EEecCCCCCcchHHHHHHHHHHHHhCCC--EEEEeCCcCCHHHHHHHHHcCCCEEe
Confidence 688888887765 5678998883 33332222 2346667777787787765 344554 5677777765541
Q ss_pred -CCceeccccCcccc--ccc--ccchhHHHHhCCeEEeecCCC
Q 019147 178 -PITAVQLEWSLWAR--DIE--NEIVPLCRELGIGIVPYCPLG 215 (345)
Q Consensus 178 -~~~~~q~~~n~~~~--~~~--~~~~~~~~~~gi~v~a~spl~ 215 (345)
.++...--|.-+.. ..+ -+.++.+++.|+.+-+...++
T Consensus 152 ~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~G 194 (345)
T PRK15108 152 HNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVG 194 (345)
T ss_pred eccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEe
Confidence 11111111111111 111 366778888888665543443
No 257
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=24.31 E-value=3.8e+02 Score=26.27 Aligned_cols=61 Identities=20% Similarity=0.280 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHhhcCCCceeEEEe-ecCC----------CCC-CHHH---HHH-HHHHHHHcCCcceEecCCCcHH
Q 019147 106 GTPEYVRSCCEASLRRLDVEYIDLYYQ-HRVD----------TSV-PIEE---TIG-EMKKLVEEGKIKYIGLSEASPD 168 (345)
Q Consensus 106 ~s~~~i~~~ve~SL~~Lg~d~iDl~~l-H~~~----------~~~-~~~~---~~~-~l~~l~~~G~ir~iGvS~~~~~ 168 (345)
.+.+.+.+.++..++ |+.++|.+|.+ +.|. ... +.++ .+. +.+.|.+.|- ..+++++|...
T Consensus 215 qt~e~~~~tl~~~~~-l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy-~~~~~~~fa~~ 291 (455)
T TIGR00538 215 QTKESFAKTLEKVAE-LNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGY-QFIGMDHFAKP 291 (455)
T ss_pred CCHHHHHHHHHHHHh-cCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCC-EEEeccceeCC
Confidence 468888888886655 89999999977 2221 001 1222 222 4455666776 56999998753
No 258
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=24.11 E-value=2e+02 Score=28.09 Aligned_cols=68 Identities=16% Similarity=0.217 Sum_probs=45.0
Q ss_pred HHHHHHHHHcCCcceEecCCCcHHHHHHHhhc--------CCCceeccccCcccccccccchhHHHHhCCeEEeecC
Q 019147 145 IGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV--------HPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCP 213 (345)
Q Consensus 145 ~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~--------~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~sp 213 (345)
.+-...+-+.|-+..+|....+++++++.+.. .+|-+|-+ .++-++..+..+++.+.++||.++..+-
T Consensus 28 ~eLVaAvs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~~~~~e~~~v~l~le~gV~~ve~sa 103 (418)
T cd04742 28 AELVVAMGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPDEPELEEGLVDLFLRHGVRVVEASA 103 (418)
T ss_pred HHHHHHHHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCCCchhHHHHHHHHHHcCCCEEEecc
Confidence 34445566889999999999999888765443 24544443 2222222235789999999998876553
No 259
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=24.01 E-value=4.1e+02 Score=24.70 Aligned_cols=86 Identities=8% Similarity=0.032 Sum_probs=57.7
Q ss_pred eeEEEeecCCCCCCHHHHHHHHHHHHHcCCc-ceEecCCCcHHHHHHHhhcCCCceeccccCcccccccccchhHHHHhC
Q 019147 127 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKI-KYIGLSEASPDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRELG 205 (345)
Q Consensus 127 iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~i-r~iGvS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~g 205 (345)
.++.++--|-... -++.+.+|++.-.+ -+.|=|-++...+..+++....+++|+..+-.-. -.++++.|+.+|
T Consensus 192 ~~i~~iEqP~~~~----~~~~~~~l~~~~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik~~k~GG--i~~~~~~a~~~g 265 (320)
T PRK02714 192 GKIEFIEQPLPPD----QFDEMLQLSQDYQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGS--PSRLRQFCQQHP 265 (320)
T ss_pred CCccEEECCCCcc----cHHHHHHHHHhCCCCEEECCccCCHHHHHHHHHcCCCCEEEEcchhcCC--HHHHHHHHHHhC
Confidence 4566666654322 35666667665433 3556677888888888887778888887665432 146778899999
Q ss_pred CeEEeecCCCCcc
Q 019147 206 IGIVPYCPLGRGF 218 (345)
Q Consensus 206 i~v~a~spl~~G~ 218 (345)
|.++..+.+..|+
T Consensus 266 i~~~~~~~~es~i 278 (320)
T PRK02714 266 LDAVFSSVFETAI 278 (320)
T ss_pred CCEEEEechhhHH
Confidence 9999876665443
No 260
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=23.99 E-value=6.7e+02 Score=24.45 Aligned_cols=96 Identities=11% Similarity=0.067 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcC--CcceEecCC--CcHHHHHHHhhcCCCce
Q 019147 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGLSE--ASPDTIRRAHAVHPITA 181 (345)
Q Consensus 106 ~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvS~--~~~~~l~~~~~~~~~~~ 181 (345)
.+++...+-+++.++. .+++++-.|-... -|+.+.+|.+.- .+.-.|=-. .+.+.++.+++....++
T Consensus 262 ~s~~eai~~~~~lle~-----~~i~~iEdPl~~~----D~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~ 332 (425)
T TIGR01060 262 LTSEEMIEYYKELVEK-----YPIVSIEDGLSEE----DWEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANS 332 (425)
T ss_pred cCHHHHHHHHHHHHhc-----CCcEEEEcCCCcc----cHHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCE
Confidence 3445554444444443 3566777664432 366666676654 554333332 35889999988888888
Q ss_pred eccccCcccccc-cccchhHHHHhCCeEEe
Q 019147 182 VQLEWSLWARDI-ENEIVPLCRELGIGIVP 210 (345)
Q Consensus 182 ~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a 210 (345)
+|+..|-+-.-. -.++...|+.+|+.++.
T Consensus 333 v~ik~~~iGGItea~~ia~lA~~~Gi~~vv 362 (425)
T TIGR01060 333 ILIKPNQIGTLTETLDAVELAKKAGYTAVI 362 (425)
T ss_pred EEecccccCCHHHHHHHHHHHHHcCCcEEE
Confidence 888877543211 25788999999998654
No 261
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=23.69 E-value=4.3e+02 Score=22.02 Aligned_cols=53 Identities=15% Similarity=0.089 Sum_probs=32.9
Q ss_pred ccchhHHHHhCCeEEeecCCCCcccCCCCccCCCCCccccccCCCCCCcchhhhHHHHHHHHHHHHHcCCCH
Q 019147 195 NEIVPLCRELGIGIVPYCPLGRGFFGGKAVVESVPLDSFLKFFPRFNGENLDRNKSIYFRIENLAKKYKCTS 266 (345)
Q Consensus 195 ~~~~~~~~~~gi~v~a~spl~~G~L~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~s~ 266 (345)
..+++.++++|..++..+|....-+. .. . ...+...+..+.++++|+++|+..
T Consensus 97 ~~ii~~~~~~~~~~il~tp~~~~~~~---------~~-------~---~~~~~~~~~~~~~~~~a~~~~~~~ 149 (198)
T cd01821 97 RRYIAEARAKGATPILVTPVTRRTFD---------EG-------G---KVEDTLGDYPAAMRELAAEEGVPL 149 (198)
T ss_pred HHHHHHHHHCCCeEEEECCccccccC---------CC-------C---cccccchhHHHHHHHHHHHhCCCE
Confidence 47888899999999888776421100 00 0 001123345568999999999874
No 262
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=23.69 E-value=5.4e+02 Score=23.10 Aligned_cols=122 Identities=16% Similarity=0.119 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhc------CCCCCeEEEeeccccccCccccccCCCHHHHHHHH
Q 019147 42 EDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKE------LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCC 115 (345)
Q Consensus 42 ~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~------~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~v 115 (345)
+++.+.+..++..|-+.| .+|.|.|-.+--.-..+ .+++.+....-.|...-. ..... .+.-...-
T Consensus 36 ~~av~~~~~~l~~ggrl~----~~GaGtSg~la~~da~e~~~tfg~~~~~v~~~iagg~~a~~---~a~~~-~edd~~~~ 107 (257)
T cd05007 36 ARAVDAAAERLRAGGRLI----YVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALT---RAVEG-AEDDEEAG 107 (257)
T ss_pred HHHHHHHHHHHHcCCEEE----EEcCcHHHHHHHHHHHhccccccCCcccceEEEeCCHHHHH---hhccc-cCChHHHH
Confidence 345556667778888877 56878775433111111 133333322222211000 00000 11111223
Q ss_pred HHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHh
Q 019147 116 EASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAH 174 (345)
Q Consensus 116 e~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~ 174 (345)
.+.+...+...=|+++.-...... .+++.+++.+++.| +.-|++++.....+....
T Consensus 108 ~~~l~a~~l~~~DvvI~IS~SG~T--~~vi~al~~Ak~~G-a~~I~It~~~~s~L~~~a 163 (257)
T cd05007 108 AADLQAINLTERDVVIGIAASGRT--PYVLGALRYARARG-ALTIGIACNPGSPLLQLA 163 (257)
T ss_pred HHHHHHcCCCCCCEEEEEeCCCCC--HHHHHHHHHHHHCC-CeEEEEECCCCChhHHhC
Confidence 344555666677999887766543 45899999999998 778999988766666643
No 263
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=23.62 E-value=1.4e+02 Score=26.75 Aligned_cols=77 Identities=14% Similarity=0.207 Sum_probs=45.6
Q ss_pred CCCcccCccccccccCcCCCCCC--CCHHHHHHHHHHH----HHCCCCeeecCC--CCCCCcHHHHHHHHHhc-------
Q 019147 16 TQGLEVSKLGYGCMSLSGCYNSP--LSEEDGISIIKHA----FSKGITFFDTAD--KYGPYTNEILLGKALKE------- 80 (345)
Q Consensus 16 ~tg~~vs~lglG~~~~g~~~~~~--~~~~~~~~~l~~A----~~~Gin~~DTA~--~Yg~G~sE~~lG~al~~------- 80 (345)
.+|+.++.+||.+-+-- .+|+. ...+++.+++..| .++||+.|--|. .|=.-.+|....+++..
T Consensus 65 etgv~ipSmClSaHRRf-PfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~~l 143 (287)
T COG3623 65 ETGVRIPSMCLSAHRRF-PFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAVEL 143 (287)
T ss_pred HhCCCccchhhhhhccC-CCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHHHH
Confidence 68999999999764411 13333 2345566666665 478999998884 33222244444444433
Q ss_pred CCCCCeEEEeecc
Q 019147 81 LPRENIQVATKFG 93 (345)
Q Consensus 81 ~~R~~~~I~tK~~ 93 (345)
..+..|.++.-+-
T Consensus 144 A~~aqV~lAvEiM 156 (287)
T COG3623 144 AARAQVMLAVEIM 156 (287)
T ss_pred HHhhccEEEeeec
Confidence 2466677766654
No 264
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=23.61 E-value=1.4e+02 Score=25.27 Aligned_cols=48 Identities=17% Similarity=0.313 Sum_probs=32.8
Q ss_pred HHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecC
Q 019147 113 SCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS 163 (345)
Q Consensus 113 ~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS 163 (345)
.+++++|..- .-++++++....+....+-++.|..|..+|++|++-+-
T Consensus 67 ~~f~~~L~e~---sn~l~lv~~~~rNp~S~~hvq~l~~l~nqg~Lr~~nLG 114 (173)
T PF10171_consen 67 QSFEDALLEA---SNDLLLVSPAIRNPTSDKHVQRLMRLRNQGRLRYLNLG 114 (173)
T ss_pred HHHHHHHHHH---hCceeccChhhcCchHHHHHHHHHHHhcCCceEEeeee
Confidence 3344444443 25777777555554556779999999999999987543
No 265
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=23.48 E-value=6.1e+02 Score=23.65 Aligned_cols=133 Identities=14% Similarity=0.097 Sum_probs=74.6
Q ss_pred CHHHHHHHHHHHHHCCCCeee----------cCCCCCCC--cHHHHHHHHHhcC-CCCCeEEEeeccccccCccccccCC
Q 019147 40 SEEDGISIIKHAFSKGITFFD----------TADKYGPY--TNEILLGKALKEL-PRENIQVATKFGFVELGFTSVIVKG 106 (345)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~D----------TA~~Yg~G--~sE~~lG~al~~~-~R~~~~I~tK~~~~~~~~~~~~~~~ 106 (345)
+.++..+..+.+.+.|+..|| +...||.. ..-+.+.+.++.. ..-++-|+.|+...... ..
T Consensus 65 ~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~------~~ 138 (318)
T TIGR00742 65 DPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDP------LD 138 (318)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCC------cc
Confidence 677777888888889999999 44455542 2233455555541 11245688888543211 01
Q ss_pred CHHHHHHHHHHHHhhcCCCceeEEEeecCCC-CCC--------H-HHHHHHHHHHHHcC-CcceEecCC-CcHHHHHHHh
Q 019147 107 TPEYVRSCCEASLRRLDVEYIDLYYQHRVDT-SVP--------I-EETIGEMKKLVEEG-KIKYIGLSE-ASPDTIRRAH 174 (345)
Q Consensus 107 s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~-~~~--------~-~~~~~~l~~l~~~G-~ir~iGvS~-~~~~~l~~~~ 174 (345)
+.+... .+-+.|+..| +|.+-+|.-.. ... . .--|+...++++.- .|--||.-+ ++.+.+.+.+
T Consensus 139 ~~~~~~-~~~~~l~~~G---~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l 214 (318)
T TIGR00742 139 SYEFLC-DFVEIVSGKG---CQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHL 214 (318)
T ss_pred hHHHHH-HHHHHHHHcC---CCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHH
Confidence 122222 3344556666 67777896532 000 0 01366677777754 577777654 5666666665
Q ss_pred hcCCCceecc
Q 019147 175 AVHPITAVQL 184 (345)
Q Consensus 175 ~~~~~~~~q~ 184 (345)
. ..+.+|+
T Consensus 215 ~--g~dgVMi 222 (318)
T TIGR00742 215 S--HVDGVMV 222 (318)
T ss_pred h--CCCEEEE
Confidence 3 4566665
No 266
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=23.35 E-value=7.2e+02 Score=24.42 Aligned_cols=82 Identities=12% Similarity=0.082 Sum_probs=53.8
Q ss_pred cCCCHHHHHHHHHHHHhhcCCCceeEEEeecCCC-CCCHHHHHHHHHHHHHc--CCcceEecCCC---cHHHHHHHhhcC
Q 019147 104 VKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDT-SVPIEETIGEMKKLVEE--GKIKYIGLSEA---SPDTIRRAHAVH 177 (345)
Q Consensus 104 ~~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~-~~~~~~~~~~l~~l~~~--G~ir~iGvS~~---~~~~l~~~~~~~ 177 (345)
...+++.+.+.+++....++ .++.+-|-.+.+ ....+.+++.|+.++++ |. .+.+++- .++.++++.+.
T Consensus 58 ~~Ltpee~~~~i~~v~~~~~--~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i--~i~lsTNG~~l~e~i~~L~~~- 132 (442)
T TIGR01290 58 ELLTPEQALRKARQVAAEIP--QLSVVGIAGPGDPLANIGKTFQTLELVARQLPDV--KLCLSTNGLMLPEHVDRLVDL- 132 (442)
T ss_pred ccCCHHHHHHHHHHHHHhcC--CCCEEEEecCCCcccCccccHHHHHHHHHhcCCC--eEEEECCCCCCHHHHHHHHHC-
Confidence 34788999999888877662 356666666543 33345688899999888 44 4666653 25677776654
Q ss_pred CCceeccccCccc
Q 019147 178 PITAVQLEWSLWA 190 (345)
Q Consensus 178 ~~~~~q~~~n~~~ 190 (345)
.++.+.+.++-++
T Consensus 133 gvd~V~islka~d 145 (442)
T TIGR01290 133 GVGHVTITINAID 145 (442)
T ss_pred CCCeEEEeccCCC
Confidence 3556666666544
No 267
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=23.26 E-value=6.4e+02 Score=23.81 Aligned_cols=116 Identities=19% Similarity=0.176 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHHHHCCCCeeecCCCCCC----------------C--cHHHHHHHHHhcCCCCCeEEEeeccccccCcc
Q 019147 39 LSEEDGISIIKHAFSKGITFFDTADKYGP----------------Y--TNEILLGKALKELPRENIQVATKFGFVELGFT 100 (345)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~----------------G--~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~ 100 (345)
++.+.-.++.+.|-+.|+-+|=|--.+.. | ....++-...+ .-..+++||=+.
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~--~~kPiIlSTGma------- 157 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK--KGKPIILSTGMA------- 157 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh--cCCCEEEEcccc-------
Confidence 46677788899999999988866433321 1 11222222222 223566666543
Q ss_pred ccccCCCHHHHHHHHHHHHhhcCCCceeEEEeecCCCC-CCHHHH-HHHHHHHHHcCCcceEecCCCcHHHHHHH
Q 019147 101 SVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTS-VPIEET-IGEMKKLVEEGKIKYIGLSEASPDTIRRA 173 (345)
Q Consensus 101 ~~~~~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~-~~~~~~-~~~l~~l~~~G~ir~iGvS~~~~~~l~~~ 173 (345)
+-+.+.++++...++=. .|+.++|..... .+.+++ +..|..|.+.= ---||+|.|+..-+..+
T Consensus 158 ------~~~ei~~av~~~r~~g~---~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l 222 (347)
T COG2089 158 ------TIEEIEEAVAILRENGN---PDIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPL 222 (347)
T ss_pred ------cHHHHHHHHHHHHhcCC---CCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHH
Confidence 35677777766555433 399999987543 556553 66666666553 34699999988755443
No 268
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=23.21 E-value=3.5e+02 Score=20.80 Aligned_cols=88 Identities=13% Similarity=0.145 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCC-----CcHHHHHHHhhcCCCceecc
Q 019147 110 YVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE-----ASPDTIRRAHAVHPITAVQL 184 (345)
Q Consensus 110 ~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~-----~~~~~l~~~~~~~~~~~~q~ 184 (345)
.+--.+-+++++|| +..+.++..++.... .....-+.-.++-.. .+.+.+..+......+.+.-
T Consensus 12 eia~r~~ra~r~~G---i~tv~v~s~~d~~s~--------~~~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~p 80 (110)
T PF00289_consen 12 EIAVRIIRALRELG---IETVAVNSNPDTVST--------HVDMADEAYFEPPGPSPESYLNIEAIIDIARKEGADAIHP 80 (110)
T ss_dssp HHHHHHHHHHHHTT---SEEEEEEEGGGTTGH--------HHHHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEEES
T ss_pred HHHHHHHHHHHHhC---CcceeccCchhcccc--------cccccccceecCcchhhhhhccHHHHhhHhhhhcCccccc
Confidence 34556778889998 555666655433222 233444555565222 56788888877778888877
Q ss_pred ccCcccccccccchhHHHHhCCeEEe
Q 019147 185 EWSLWARDIENEIVPLCRELGIGIVP 210 (345)
Q Consensus 185 ~~n~~~~~~~~~~~~~~~~~gi~v~a 210 (345)
-|..+.-. .++.+.|.++||.++.
T Consensus 81 Gyg~lse~--~~fa~~~~~~gi~fiG 104 (110)
T PF00289_consen 81 GYGFLSEN--AEFAEACEDAGIIFIG 104 (110)
T ss_dssp TSSTTTTH--HHHHHHHHHTT-EESS
T ss_pred ccchhHHH--HHHHHHHHHCCCEEEC
Confidence 78777664 4788889999998875
No 269
>PRK01903 rnpA ribonuclease P; Reviewed
Probab=23.10 E-value=4e+02 Score=21.39 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHhh----cCCC----------ceeEEEeecC--CCCCCHHHHHHHHHHHHH
Q 019147 107 TPEYVRSCCEASLRR----LDVE----------YIDLYYQHRV--DTSVPIEETIGEMKKLVE 153 (345)
Q Consensus 107 s~~~i~~~ve~SL~~----Lg~d----------~iDl~~lH~~--~~~~~~~~~~~~l~~l~~ 153 (345)
.+..|++.+.++.+. |..+ ++|++++..+ ....+.+++-+.|+.|.+
T Consensus 66 ~RNRiKR~lREa~R~~~~~l~~~~~~~~~~~~~~~~iv~i~~~~~~~~~~~~~l~~~l~~ll~ 128 (133)
T PRK01903 66 KRNRIKRLMREAYRLEKHVLLDRLETDAGAKNRQLAIAFLYTGRSDEIPSLAEFRREMRKLLQ 128 (133)
T ss_pred hhhHHHHHHHHHHHHhHhhhcccccccccccCcceEEEEEEeccccccCCHHHHHHHHHHHHH
Confidence 466777777777665 4333 4799999988 333456666666666544
No 270
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=23.01 E-value=4.3e+02 Score=21.78 Aligned_cols=98 Identities=19% Similarity=0.113 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhcCCCC-CeEEEeeccccccCccccccCCCHHHHHHHHHHH
Q 019147 40 SEEDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRE-NIQVATKFGFVELGFTSVIVKGTPEYVRSCCEAS 118 (345)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~R~-~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~S 118 (345)
+.+...++++.+.+.|++-+-+.. .++-.+.+. ..+ ++-|..+++..... ...+...+.++..
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------~~i~~~~~~-~~~~~~~v~~~v~~~~~~-------~~~~~~~~~a~~a 74 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------GYVRLAADA-LAGSDVPVIVVVGFPTGL-------TTTEVKVAEVEEA 74 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------HHHHHHHHH-hCCCCCeEEEEecCCCCC-------CcHHHHHHHHHHH
Confidence 678899999999999999876553 233333332 334 67777787643210 1134444444444
Q ss_pred HhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHc
Q 019147 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEE 154 (345)
Q Consensus 119 L~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~ 154 (345)
.++|.|.+.+..-+........+++.+.++++.+.
T Consensus 75 -~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~ 109 (201)
T cd00945 75 -IDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEA 109 (201)
T ss_pred -HHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHH
Confidence 44575555443222111111134555555555554
No 271
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=22.90 E-value=7.4e+02 Score=24.42 Aligned_cols=109 Identities=13% Similarity=0.071 Sum_probs=60.5
Q ss_pred CCCCCCcHHHHHHHHHhc----CC-CCCeEEEeeccccccCccccccCCCHHHHHHHHHHHHhhcC---C--CceeEEEe
Q 019147 63 DKYGPYTNEILLGKALKE----LP-RENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLD---V--EYIDLYYQ 132 (345)
Q Consensus 63 ~~Yg~G~sE~~lG~al~~----~~-R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~Lg---~--d~iDl~~l 132 (345)
-.|| .|.-|-+++++ .+ .+-++|.|-+.... --+.+...+++.-++++ . -.+.++.+
T Consensus 72 ~VfG---g~~~L~~ai~~~~~~~~~p~~i~v~ttc~~ei----------iGDDi~~v~~~~~~~~~~~~~p~~~~~ii~v 138 (461)
T TIGR02931 72 AVFG---ALDRVEEAVDVLLTRYPDVKVVPIITTCSTEI----------IGDDVDGLISKLNEELLKEKFPDREVHLIPI 138 (461)
T ss_pred eEEC---cHHHHHHHHHHHHHhcCCCCEEEEECCchHHh----------hhcCHHHHHHHHHhhhcccccCCCCCeEEEe
Confidence 4677 56677788876 22 33456666654321 12344444444444442 1 13678999
Q ss_pred ecCCCCCCH----HHHHHHHH-HHHH----cCCcceEecCC--CcHHHHHHHhhcCCCceecc
Q 019147 133 HRVDTSVPI----EETIGEMK-KLVE----EGKIKYIGLSE--ASPDTIRRAHAVHPITAVQL 184 (345)
Q Consensus 133 H~~~~~~~~----~~~~~~l~-~l~~----~G~ir~iGvS~--~~~~~l~~~~~~~~~~~~q~ 184 (345)
|.|+..... +.+++++- ++.. +++|--||-.+ -+.+.++++++...+.++.+
T Consensus 139 ~tpgF~gs~~~Gy~~a~~ali~~~~~~~~~~~~VNlig~~~~~~D~~elk~lL~~~Gl~v~~l 201 (461)
T TIGR02931 139 HTPSFVGSMITGYDVAVHDFVKHFAKKDKPNDKINLITGWVNPGDVKELKHLLEEMDIEANVL 201 (461)
T ss_pred eCCCCCCcHHHHHHHHHHHHHHHHccCCCCCCcEEEECCCCChhhHHHHHHHHHHcCCceEEe
Confidence 999876443 23333332 2222 46688888543 24466777887776666543
No 272
>PF08418 Pol_alpha_B_N: DNA polymerase alpha subunit B N-terminal; InterPro: IPR013627 This is the eukaryotic DNA polymerase alpha subunit B N-terminal domain which is involved in complex formation []. ; PDB: 4E2I_9 2KEB_A 3FLO_G.
Probab=22.89 E-value=82 Score=28.18 Aligned_cols=49 Identities=12% Similarity=0.274 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH---HHhcCCCeEecCCCCCHHhHHHhhc
Q 019147 249 KSIYFRIENLAKKYKCTSAQLALAW---VLAQGEDVVPIPGTTKIKNLDDNIG 298 (345)
Q Consensus 249 ~~~~~~l~~la~~~g~s~~q~al~~---~l~~~~v~~vi~g~~~~~~l~enl~ 298 (345)
..++.++..||+.|++++.+++..| ++++..- ..-+...+.+.+++.|.
T Consensus 9 ~~vl~kl~slc~~~~ls~edL~~kWeaf~~~~~~~-~~~l~~~~L~~F~~~lq 60 (253)
T PF08418_consen 9 PDVLEKLQSLCRLYNLSAEDLFYKWEAFSLNMQLD-DTKLTLDNLDQFKQYLQ 60 (253)
T ss_dssp HHHHHHHHTHHHHST--HHHHHHHHTTHHHHTT-S-C----TTTTTGGGTTTS
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCC-cCcCCHHHHHHHHHHHH
Confidence 4678899999999999999999997 4454432 22255556666655543
No 273
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=22.82 E-value=1.2e+02 Score=26.58 Aligned_cols=98 Identities=20% Similarity=0.213 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHH-CCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeeccccccCccccccCCCHHHHHHHHHHH
Q 019147 40 SEEDGISIIKHAFS-KGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEAS 118 (345)
Q Consensus 40 ~~~~~~~~l~~A~~-~Gin~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~S 118 (345)
+.+++..+.+...+ .|+-|...++=|= +-+...+..+..+. .++++-.. +.+.+.+ .+.
T Consensus 11 ~~eda~~a~~~gad~iG~If~~~SpR~V---s~~~a~~i~~~v~~-----~~~VgVf~--------n~~~~~i----~~i 70 (208)
T COG0135 11 RLEDAKAAAKAGADYIGFIFVPKSPRYV---SPEQAREIASAVPK-----VKVVGVFV--------NESIEEI----LEI 70 (208)
T ss_pred CHHHHHHHHHcCCCEEEEEEcCCCCCcC---CHHHHHHHHHhCCC-----CCEEEEEC--------CCCHHHH----HHH
Confidence 44555444444333 2444445466554 44444455544222 12333222 2234443 444
Q ss_pred HhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHc---CCcceEecCCCcH
Q 019147 119 LRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEE---GKIKYIGLSEASP 167 (345)
Q Consensus 119 L~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~---G~ir~iGvS~~~~ 167 (345)
++.++ +|++|||.... .+.+++|+.+ ..+++|.++.-..
T Consensus 71 ~~~~~---ld~VQlHG~e~-------~~~~~~l~~~~~~~v~kai~v~~~~~ 112 (208)
T COG0135 71 AEELG---LDAVQLHGDED-------PEYIDQLKEELGVPVIKAISVSEEGD 112 (208)
T ss_pred HHhcC---CCEEEECCCCC-------HHHHHHHHhhcCCceEEEEEeCCccc
Confidence 44554 89999998843 4445555554 5788999876543
No 274
>PLN00191 enolase
Probab=22.81 E-value=2.7e+02 Score=27.53 Aligned_cols=96 Identities=11% Similarity=0.113 Sum_probs=65.0
Q ss_pred CCHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEec-C-CCcHHHHHHHhhcCCCceec
Q 019147 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGL-S-EASPDTIRRAHAVHPITAVQ 183 (345)
Q Consensus 106 ~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGv-S-~~~~~~l~~~~~~~~~~~~q 183 (345)
.+++.+.+-+...+++ .++.+|-.|-.. +-|+.+.+|.++.++.-+|= + ..+++.+..+++....++++
T Consensus 295 ~s~~e~i~~~~~L~~~-----y~I~~IEDPl~~----~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~ 365 (457)
T PLN00191 295 KSGDELIDLYKEFVSD-----YPIVSIEDPFDQ----DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALL 365 (457)
T ss_pred cCHHHHHHHHHHHhhc-----CCcEEEECCCCc----ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEE
Confidence 3555555555444433 356777777443 23677777888878776662 2 36688899998888888888
Q ss_pred cccCcccccc-cccchhHHHHhCCeEEe
Q 019147 184 LEWSLWARDI-ENEIVPLCRELGIGIVP 210 (345)
Q Consensus 184 ~~~n~~~~~~-~~~~~~~~~~~gi~v~a 210 (345)
+..|-+-.-. -.++.+.|+.+|+.++.
T Consensus 366 iKl~qiGGITea~~~a~lA~~~G~~~~i 393 (457)
T PLN00191 366 LKVNQIGTVTESIEAVKMSKAAGWGVMT 393 (457)
T ss_pred ecccccCCHHHHHHHHHHHHHCCCEEEe
Confidence 8877543211 25788999999999976
No 275
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=22.80 E-value=6.6e+02 Score=23.79 Aligned_cols=120 Identities=13% Similarity=0.200 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHHHHHC---CCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeeccccccCccccccCCCHHHHHHHH
Q 019147 39 LSEEDGISIIKHAFSK---GITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCC 115 (345)
Q Consensus 39 ~~~~~~~~~l~~A~~~---Gin~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~v 115 (345)
.+.++..+++....+. =+-.+|..+..+... ..+-+.+. ...-++|.+|+-.... ....+.+.+-+
T Consensus 48 ~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~--~~l~~~~~--~~piilV~NK~DLl~k-------~~~~~~~~~~l 116 (360)
T TIGR03597 48 LNDDDFLNLLNSLGDSNALIVYVVDIFDFEGSLI--PELKRFVG--GNPVLLVGNKIDLLPK-------SVNLSKIKEWM 116 (360)
T ss_pred CCHHHHHHHHhhcccCCcEEEEEEECcCCCCCcc--HHHHHHhC--CCCEEEEEEchhhCCC-------CCCHHHHHHHH
Confidence 4556677776666532 223567655444321 12223332 4566889999864321 22355666666
Q ss_pred HHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHH
Q 019147 116 EASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTI 170 (345)
Q Consensus 116 e~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l 170 (345)
.+-++.+|....+++.+- .-....++++++.+.++.+.+.|-.+|.+|..-..+
T Consensus 117 ~~~~k~~g~~~~~i~~vS-Ak~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStl 170 (360)
T TIGR03597 117 KKRAKELGLKPVDIILVS-AKKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSL 170 (360)
T ss_pred HHHHHHcCCCcCcEEEec-CCCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 666777776544666554 333455888899998887767888999999876554
No 276
>PRK04820 rnpA ribonuclease P; Reviewed
Probab=22.78 E-value=4.3e+02 Score=21.62 Aligned_cols=64 Identities=14% Similarity=0.143 Sum_probs=41.6
Q ss_pred CCCCeEEEeeccccccCccccccCCCHHHHHHHHHHHHhhcC--CCceeEEEeecCCC-CCCHHHHHHHHHHHHHc
Q 019147 82 PRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLD--VEYIDLYYQHRVDT-SVPIEETIGEMKKLVEE 154 (345)
Q Consensus 82 ~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~Lg--~d~iDl~~lH~~~~-~~~~~~~~~~l~~l~~~ 154 (345)
.|=-+.|+-|++... ..+..|++.+.++.+.+. +...|++++-.+.. ..+..++.+.|..|.++
T Consensus 48 ~RlG~sVSKKvg~~A---------V~RNRiKR~lRE~fR~~~~~l~~~DiVviar~~~~~~~~~~l~~~l~~LL~k 114 (145)
T PRK04820 48 PRLGLAVSRKVDTRA---------VGRNRIKRVLREAMRQLLPELAPGDYVVVARSAAAKASNPQLRDAFLRLLRR 114 (145)
T ss_pred cEEEEEEeccccCcc---------hhHHHHHHHHHHHHHHhhhccCCCCEEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 344566666764222 346777777777777553 23349888887764 35677888888877765
No 277
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=22.67 E-value=5.8e+02 Score=23.09 Aligned_cols=120 Identities=16% Similarity=0.170 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHHCCCCeeecCCCCCCCc----HH--HHHHHHHhcCCCCCeEEEeeccccccCccccccCCCHHHHH
Q 019147 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYT----NE--ILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVR 112 (345)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~----sE--~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~ 112 (345)
+|.+...+.++..++.|++-|=.+-.-|.+. .| +++-.+.+. ...++-|..=++. .+.+...
T Consensus 19 id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~-~~~~~~vi~gv~~-----------~st~~~i 86 (289)
T PF00701_consen 19 IDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEA-AAGRVPVIAGVGA-----------NSTEEAI 86 (289)
T ss_dssp B-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHH-HTTSSEEEEEEES-----------SSHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHH-ccCceEEEecCcc-----------hhHHHHH
Confidence 5888899999999999999877665555442 22 223233332 2233333333332 1233333
Q ss_pred HHHHHHHhhcCCCceeEEEeecCCCC-CCHHHHHHHHHHHHHcCCcceEecC--------CCcHHHHHHHhh
Q 019147 113 SCCEASLRRLDVEYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLS--------EASPDTIRRAHA 175 (345)
Q Consensus 113 ~~ve~SL~~Lg~d~iDl~~lH~~~~~-~~~~~~~~~l~~l~~~G~ir~iGvS--------~~~~~~l~~~~~ 175 (345)
+..+. .+.+| +|.+++.-|... ..-+++.+.++++-+...+- |-+- +.+++.+.++.+
T Consensus 87 ~~a~~-a~~~G---ad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~p-i~iYn~P~~tg~~ls~~~l~~L~~ 153 (289)
T PF00701_consen 87 ELARH-AQDAG---ADAVLVIPPYYFKPSQEELIDYFRAIADATDLP-IIIYNNPARTGNDLSPETLARLAK 153 (289)
T ss_dssp HHHHH-HHHTT----SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSE-EEEEEBHHHHSSTSHHHHHHHHHT
T ss_pred HHHHH-HhhcC---ceEEEEeccccccchhhHHHHHHHHHHhhcCCC-EEEEECCCccccCCCHHHHHHHhc
Confidence 33333 34566 455555555332 23455666666666554332 2222 234555666555
No 278
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.36 E-value=6.8e+02 Score=23.77 Aligned_cols=101 Identities=12% Similarity=0.119 Sum_probs=59.9
Q ss_pred HHhhcCCCceeEEEeecCCCC-----------CCHHHHHHHHHHHHHc-CC---cceEecC--CCcHHHHHHH---hhcC
Q 019147 118 SLRRLDVEYIDLYYQHRVDTS-----------VPIEETIGEMKKLVEE-GK---IKYIGLS--EASPDTIRRA---HAVH 177 (345)
Q Consensus 118 SL~~Lg~d~iDl~~lH~~~~~-----------~~~~~~~~~l~~l~~~-G~---ir~iGvS--~~~~~~l~~~---~~~~ 177 (345)
-|...+...+++ -||.+++. .+++++++++.+...+ |+ |+++=+. |.+.++++++ +...
T Consensus 207 ~L~~~~l~~L~i-SLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~~v~iey~LI~GvNDs~ed~~~l~~~l~~~ 285 (354)
T PRK14460 207 ELGESGLAFLAV-SLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRERVTFEYLLLGGVNDSLEHARELVRLLSRT 285 (354)
T ss_pred HHHhCCCcEEEE-eCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCCeEEEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 355556555554 57777542 2467788888765443 22 3344332 4554554444 4445
Q ss_pred CCceeccccCccccc----cc----ccchhHHHHhCCeEEeecCCCCccc
Q 019147 178 PITAVQLEWSLWARD----IE----NEIVPLCRELGIGIVPYCPLGRGFF 219 (345)
Q Consensus 178 ~~~~~q~~~n~~~~~----~~----~~~~~~~~~~gi~v~a~spl~~G~L 219 (345)
+..++-++||++... +. ..+.+..+++|+.+..+...+..+.
T Consensus 286 ~~~VnLIpyn~~~g~~y~~p~~e~v~~f~~~l~~~Gi~vtir~~~G~di~ 335 (354)
T PRK14460 286 KCKLNLIVYNPAEGLPYSAPTEERILAFEKYLWSKGITAIIRKSKGQDIK 335 (354)
T ss_pred CCcEEEEcCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCCchH
Confidence 567888999986432 11 3456677788999988877765443
No 279
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=22.35 E-value=3.9e+02 Score=21.95 Aligned_cols=147 Identities=15% Similarity=0.128 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHCCCCeeecCCCCC-CCc-----HHHHHHHHHhcCC-CCCeEEEeeccccccCccccccCCCHHHHHH
Q 019147 41 EEDGISIIKHAFSKGITFFDTADKYG-PYT-----NEILLGKALKELP-RENIQVATKFGFVELGFTSVIVKGTPEYVRS 113 (345)
Q Consensus 41 ~~~~~~~l~~A~~~Gin~~DTA~~Yg-~G~-----sE~~lG~al~~~~-R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~ 113 (345)
++.....++.|++.|.++|++--... +|. .-..+-++|+... .-.+.|=.|.... .+.+.+
T Consensus 12 pent~~a~~~a~~~g~~~iE~Dv~~tkDg~~vv~Hdi~tL~e~l~~~~~~~~i~leiK~~~~------------~~~~~~ 79 (189)
T cd08556 12 PENTLAAFRKALEAGADGVELDVQLTKDGVLVVIHDIPTLEEVLELVKGGVGLNIELKEPTR------------YPGLEA 79 (189)
T ss_pred CchHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcCCCCHHHHHHhcccCcEEEEEECCCCC------------chhHHH
Confidence 46788889999999999887532211 110 1112333333322 2234454553211 234455
Q ss_pred HHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCCC--cHHHHH-HHhhcCCCceeccccCccc
Q 019147 114 CCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA--SPDTIR-RAHAVHPITAVQLEWSLWA 190 (345)
Q Consensus 114 ~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~--~~~~l~-~~~~~~~~~~~q~~~n~~~ 190 (345)
.+-+.+++.+. .+-+++.+.+. +.+..+.+...+ . .+|+... ...... .......++.+.+.+..+.
T Consensus 80 ~l~~~i~~~~~--~~~v~i~s~~~-----~~l~~~~~~~p~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 149 (189)
T cd08556 80 KVAELLREYGL--EERVVVSSFDH-----EALRALKELDPE-V--PTGLLVDKPPLDPLLAELARALGADAVNPHYKLLT 149 (189)
T ss_pred HHHHHHHHcCC--cCCEEEEeCCH-----HHHHHHHHhCCC-C--cEEEEeecCcccchhhhHHHhcCCeEEccChhhCC
Confidence 56666666652 24444444322 233333333222 1 1333222 111111 1222344555666555433
Q ss_pred ccccccchhHHHHhCCeEEeecC
Q 019147 191 RDIENEIVPLCRELGIGIVPYCP 213 (345)
Q Consensus 191 ~~~~~~~~~~~~~~gi~v~a~sp 213 (345)
..+++.|+++|+.+.+|..
T Consensus 150 ----~~~i~~~~~~g~~v~~wtv 168 (189)
T cd08556 150 ----PELVRAAHAAGLKVYVWTV 168 (189)
T ss_pred ----HHHHHHHHHcCCEEEEEcC
Confidence 4789999999999999854
No 280
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=22.19 E-value=2.5e+02 Score=26.80 Aligned_cols=101 Identities=16% Similarity=0.111 Sum_probs=55.9
Q ss_pred HHHHHHHHHhc----CCCCCeEEEeeccccccCccccccCCCHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCC----H
Q 019147 70 NEILLGKALKE----LPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVP----I 141 (345)
Q Consensus 70 sE~~lG~al~~----~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~----~ 141 (345)
.|+-|-+++++ ..++-++|.|-+.... --+.+..-+++.-++.+ +.++.+|.+..... .
T Consensus 58 ~~~kL~~~i~~~~~~~~P~~i~v~~sC~~~i----------IGdD~~~v~~~~~~~~~---~~vi~v~~~gf~~~~~~G~ 124 (398)
T PF00148_consen 58 GEEKLREAIKEIAEKYKPKAIFVVTSCVPEI----------IGDDIEAVARELQEEYG---IPVIPVHTPGFSGSYSQGY 124 (398)
T ss_dssp SHHHHHHHHHHHHHHHSTSEEEEEE-HHHHH----------TTTTHHHHHHHHHHHHS---SEEEEEE--TTSSSHHHHH
T ss_pred chhhHHHHHHHHHhcCCCcEEEEECCCCHHH----------hCCCHHHHHHHhhcccC---CcEEEEECCCccCCccchH
Confidence 45555566655 3456677887765322 12234444444444555 38888998876433 2
Q ss_pred HHHHHHHHHHH-H------cCCcceEecCCCc---HHHHHHHhhcCCCceec
Q 019147 142 EETIGEMKKLV-E------EGKIKYIGLSEAS---PDTIRRAHAVHPITAVQ 183 (345)
Q Consensus 142 ~~~~~~l~~l~-~------~G~ir~iGvS~~~---~~~l~~~~~~~~~~~~q 183 (345)
+.++.+|-+.. + ++.|--||.++.. ..++.++++...+.++.
T Consensus 125 ~~a~~~l~~~~~~~~~~~~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi~v~~ 176 (398)
T PF00148_consen 125 DAALRALAEQLVKPPEEKKPRSVNIIGGSPLGPGDLEELKRLLEELGIEVNA 176 (398)
T ss_dssp HHHHHHHHHHHTTGTTTTSSSEEEEEEESTBTHHHHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHhhcccccccCCCCceEEecCcCCCcccHHHHHHHHHHCCCceEE
Confidence 44555554444 2 3678888998765 34566677665554433
No 281
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=22.14 E-value=3.4e+02 Score=24.64 Aligned_cols=100 Identities=11% Similarity=0.082 Sum_probs=51.1
Q ss_pred CCHHHHHHHHHHHHhhcCCCceeEEEeecCCC-C----CCHHHHHHHHHHHHHcC---Ccce-------EecCCCcHH--
Q 019147 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDT-S----VPIEETIGEMKKLVEEG---KIKY-------IGLSEASPD-- 168 (345)
Q Consensus 106 ~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~-~----~~~~~~~~~l~~l~~~G---~ir~-------iGvS~~~~~-- 168 (345)
++.+...+ +-..|.++|+++|++-. |.. . ..-++-++.++++.+.. ++.. +|++.++.+
T Consensus 18 ~~~~~~~~-ia~~L~~~Gv~~iE~G~---~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~ 93 (275)
T cd07937 18 MRTEDMLP-IAEALDEAGFFSLEVWG---GATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVV 93 (275)
T ss_pred ccHHHHHH-HHHHHHHcCCCEEEccC---CcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHH
Confidence 44554444 58899999999999862 321 0 00112244444444432 2222 233333332
Q ss_pred --HHHHHhhcCCCceeccccCcccccccccchhHHHHhCCeEEe
Q 019147 169 --TIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRELGIGIVP 210 (345)
Q Consensus 169 --~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a 210 (345)
.++.+.+ ..++.+.+-+.+-+-+.-.+.+++++++|+.+..
T Consensus 94 ~~di~~~~~-~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 94 ELFVEKAAK-NGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred HHHHHHHHH-cCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEE
Confidence 2333333 3455555543332222125788999999987764
No 282
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=22.10 E-value=2e+02 Score=25.10 Aligned_cols=87 Identities=16% Similarity=0.226 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCC-CcHHHHHHHhhcCCCceecccc
Q 019147 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQLEW 186 (345)
Q Consensus 108 ~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~ 186 (345)
++...+ +-+.|-.-|+..+-+=+ - ....++.+++++++..=-.||.-+ .+.++++.+++..- +++ .
T Consensus 19 ~e~a~~-~~~al~~~Gi~~iEit~---~-----t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA-~Fi---v 85 (204)
T TIGR01182 19 VDDALP-LAKALIEGGLRVLEVTL---R-----TPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGA-QFI---V 85 (204)
T ss_pred HHHHHH-HHHHHHHcCCCEEEEeC---C-----CccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCC-CEE---E
Confidence 444433 45566667755554422 1 123566666666654324688876 68888888887532 232 2
Q ss_pred CcccccccccchhHHHHhCCeEEe
Q 019147 187 SLWARDIENEIVPLCRELGIGIVP 210 (345)
Q Consensus 187 n~~~~~~~~~~~~~~~~~gi~v~a 210 (345)
++ ....+++++|+++||.++.
T Consensus 86 sP---~~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 86 SP---GLTPELAKHAQDHGIPIIP 106 (204)
T ss_pred CC---CCCHHHHHHHHHcCCcEEC
Confidence 22 2236899999999999885
No 283
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=21.98 E-value=5.9e+02 Score=22.95 Aligned_cols=116 Identities=10% Similarity=0.131 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHHCCCCee-e-cCCCCCCCc-HHHHHHHHHhcCCCCCeEEEeeccccccCccccccCCCHHHHHHHHH
Q 019147 40 SEEDGISIIKHAFSKGITFF-D-TADKYGPYT-NEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCE 116 (345)
Q Consensus 40 ~~~~~~~~l~~A~~~Gin~~-D-TA~~Yg~G~-sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve 116 (345)
+.++..+.++.+.+.|++.| - ++..+.... .++.+....+...+-.+.+..-.+ ..+++ .-
T Consensus 63 ~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~g-----------~~~~e-----~l 126 (296)
T TIGR00433 63 KVDEVLEEARKAKAAGATRFCLVASGRGPKDREFMEYVEAMVQIVEEMGLKTCATLG-----------LLDPE-----QA 126 (296)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEEecCCCChHHHHHHHHHHHHHHHhCCCeEEecCC-----------CCCHH-----HH
Confidence 45666666677778998753 2 222222111 234454443322222333322211 12233 33
Q ss_pred HHHhhcCCCceeEEEeecC------CCCCCHHHHHHHHHHHHHcCCcc----eEecCCCcHHHHHH
Q 019147 117 ASLRRLDVEYIDLYYQHRV------DTSVPIEETIGEMKKLVEEGKIK----YIGLSEASPDTIRR 172 (345)
Q Consensus 117 ~SL~~Lg~d~iDl~~lH~~------~~~~~~~~~~~~l~~l~~~G~ir----~iGvS~~~~~~l~~ 172 (345)
+.|+..|++.+-+-+=..+ .....+++.+++++.+++.|.-- -+|+ +.+.+.+.+
T Consensus 127 ~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl-~et~~d~~~ 191 (296)
T TIGR00433 127 KRLKDAGLDYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGL-GETVEDRIG 191 (296)
T ss_pred HHHHHcCCCEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeC-CCCHHHHHH
Confidence 4577778776544221111 11234677788888888887521 2455 445554444
No 284
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=21.89 E-value=1.2e+02 Score=27.95 Aligned_cols=49 Identities=22% Similarity=0.204 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhhcCCCce--eEEEeecCCCCCCHHHHHHHHHHHHHcCCcce
Q 019147 108 PEYVRSCCEASLRRLDVEYI--DLYYQHRVDTSVPIEETIGEMKKLVEEGKIKY 159 (345)
Q Consensus 108 ~~~i~~~ve~SL~~Lg~d~i--Dl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~ 159 (345)
.+...+.+.+.|++||+.+- ..+.=+.+ ...+.+++.+++|.++|.|-.
T Consensus 81 ~~~~~~~~~~~l~~lgI~~Dw~~~~~T~~~---~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISYDWSDEYITTEP---EYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHHhCccccCCCCeECCCH---HHHHHHHHHHHHHHHCCCEEe
Confidence 56777889999999998632 22222222 235678999999999999764
No 285
>PRK01492 rnpA ribonuclease P; Reviewed
Probab=21.83 E-value=4e+02 Score=20.87 Aligned_cols=61 Identities=11% Similarity=0.086 Sum_probs=42.3
Q ss_pred CCCeEEEeeccccccCccccccCCCHHHHHHHHHHHHhhcCCC------ceeEEEeecCCCC-CCHHHHHHHHHHHH
Q 019147 83 RENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRRLDVE------YIDLYYQHRVDTS-VPIEETIGEMKKLV 152 (345)
Q Consensus 83 R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~Lg~d------~iDl~~lH~~~~~-~~~~~~~~~l~~l~ 152 (345)
|=-+.|+-|++... ..+..+++.+.++.+....+ -.|++++-.+... .+..++-+.|+.|.
T Consensus 47 RlG~sVSKKv~~kA---------V~RNRiKR~lRE~fR~~~~~~~l~~~g~DiVviaR~~~~~~~~~~l~~~l~~l~ 114 (118)
T PRK01492 47 FLGIKVSRKLNKKA---------VVRNKIKRRIRHLIRIIVSDSSFKAIKFAMIIIPRKGFEEINFSHLNYELSKII 114 (118)
T ss_pred eEEEEEecccCCch---------hhHHHHHHHHHHHHHHhCcccccCCCCceEEEEECCCcccCCHHHHHHHHHHHH
Confidence 55678888865322 34788999999998887642 4799999888653 45666666666553
No 286
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=21.72 E-value=81 Score=29.50 Aligned_cols=107 Identities=12% Similarity=0.165 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHCCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeeccccccCccccccCCCHHHHHHHHHHHHhh
Q 019147 42 EDGISIIKHAFSKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFTSVIVKGTPEYVRSCCEASLRR 121 (345)
Q Consensus 42 ~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~~~~~~~s~~~i~~~ve~SL~~ 121 (345)
+--+++|+..-+.|+ .+|.|+. ||+.+=++++- -+..+|+|-.....-. .+++.-++...++|.+ +
T Consensus 160 ~~G~~vV~~mn~lGm-~vDvSH~-----s~~t~~Dv~~~--s~~PviaSHSn~ral~---~h~RNltDe~iraia~---~ 225 (320)
T PF01244_consen 160 PFGREVVREMNRLGM-LVDVSHL-----SEKTFWDVLEI--SKKPVIASHSNARALC---PHPRNLTDEQIRAIAE---R 225 (320)
T ss_dssp HHHHHHHHHHHHHT--EEE-TTB------HHHHHHHHHH---SSEEEECCEEBTTTS-----TTSB-HHHHHHHHH---T
T ss_pred hHHHHHHHHHHHcCC-eeeeccC-----CHHHHHHHHhh--cCCCEEEeccChHhhC---CCCCCCCHHHHHHHHH---C
Confidence 457899999999998 9999986 88999899974 3457777776544321 1122223333333332 2
Q ss_pred cCCCceeEEEeecC-----CCCCCHHHHHHHHHHHHHcCCcceEecCC
Q 019147 122 LDVEYIDLYYQHRV-----DTSVPIEETIGEMKKLVEEGKIKYIGLSE 164 (345)
Q Consensus 122 Lg~d~iDl~~lH~~-----~~~~~~~~~~~~l~~l~~~G~ir~iGvS~ 164 (345)
=| .|=+.++... +....++++++.++.+++.+=+.+||+.+
T Consensus 226 GG--viGi~~~~~fl~~~~~~~~~~~~~~~Hi~y~~~l~G~dhVgiGs 271 (320)
T PF01244_consen 226 GG--VIGINFYPAFLGDDWDPRASLDDLVDHIDYIVDLVGIDHVGIGS 271 (320)
T ss_dssp T---EEEEESSHHHHSTTHSSG-BHHHHHHHHHHHHHHH-GGGEEEE-
T ss_pred Cc--EEEEEcchhhhcccccccccHHHHHHHHHHHHHhcCCCeEEECc
Confidence 22 2333322211 13356888999999999888899999965
No 287
>PF13518 HTH_28: Helix-turn-helix domain
Probab=21.66 E-value=1.1e+02 Score=19.35 Aligned_cols=22 Identities=9% Similarity=0.522 Sum_probs=17.1
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Q 019147 254 RIENLAKKYKCTSAQLALAWVLA 276 (345)
Q Consensus 254 ~l~~la~~~g~s~~q~al~~~l~ 276 (345)
.+.++|+++|+|..++ .+|+-.
T Consensus 14 s~~~~a~~~gis~~tv-~~w~~~ 35 (52)
T PF13518_consen 14 SVREIAREFGISRSTV-YRWIKR 35 (52)
T ss_pred CHHHHHHHHCCCHhHH-HHHHHH
Confidence 5678899999988775 777754
No 288
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.64 E-value=7.1e+02 Score=23.72 Aligned_cols=89 Identities=12% Similarity=0.106 Sum_probs=56.2
Q ss_pred EeecCCCC-----------CCHHHHHHHHHHHH-HcCC---cceEecC--CCcHHHHHHHh---hcCCCceeccccCccc
Q 019147 131 YQHRVDTS-----------VPIEETIGEMKKLV-EEGK---IKYIGLS--EASPDTIRRAH---AVHPITAVQLEWSLWA 190 (345)
Q Consensus 131 ~lH~~~~~-----------~~~~~~~~~l~~l~-~~G~---ir~iGvS--~~~~~~l~~~~---~~~~~~~~q~~~n~~~ 190 (345)
-||.+++. .++++++++++++. +.|+ |+++=+. |.+.++++++. +..+..++-++||++.
T Consensus 225 SLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~~i~ieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPyn~~~ 304 (356)
T PRK14462 225 SLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRKRVMFEYLVIKDVNDDLKSAKKLVKLLNGIKAKVNLILFNPHE 304 (356)
T ss_pred ECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCCeEEEEEEEECCCCCCHHHHHHHHHHHhhcCcEEEEEeCCCCC
Confidence 48988653 23567888887554 5554 5555554 45556555544 4345678899999865
Q ss_pred cc----cc----ccchhHHHHhCCeEEeecCCCCccc
Q 019147 191 RD----IE----NEIVPLCRELGIGIVPYCPLGRGFF 219 (345)
Q Consensus 191 ~~----~~----~~~~~~~~~~gi~v~a~spl~~G~L 219 (345)
.. +. ....+..+++||.+..+...+..+.
T Consensus 305 ~~~~~~ps~e~i~~f~~~l~~~gi~vtvR~~~G~dI~ 341 (356)
T PRK14462 305 GSKFERPSLEDMIKFQDYLNSKGLLCTIRESKGLDIS 341 (356)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCcEEEeCCCCCchh
Confidence 31 11 2345566778999998877765443
No 289
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=21.53 E-value=2e+02 Score=22.11 Aligned_cols=52 Identities=15% Similarity=0.137 Sum_probs=30.8
Q ss_pred cCCCcHHHHHHHhhcCCCceeccccCcccccccccchhHHHHhCCeEEeecC
Q 019147 162 LSEASPDTIRRAHAVHPITAVQLEWSLWARDIENEIVPLCRELGIGIVPYCP 213 (345)
Q Consensus 162 vS~~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~sp 213 (345)
.+.-+.+.+..++...+++++-+-..--.+....++.++++++||++..+..
T Consensus 36 ~~~l~~~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T 87 (109)
T cd00248 36 LSDLDPEALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMST 87 (109)
T ss_pred cccCCHHHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCc
Confidence 4445666666665543355554433332223335788999999999887543
No 290
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=21.28 E-value=7.6e+02 Score=23.92 Aligned_cols=96 Identities=15% Similarity=0.149 Sum_probs=61.0
Q ss_pred CCHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcC--CcceEecC--CCcHHHHHHHhhcCCCce
Q 019147 106 GTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGLS--EASPDTIRRAHAVHPITA 181 (345)
Q Consensus 106 ~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G--~ir~iGvS--~~~~~~l~~~~~~~~~~~ 181 (345)
.+++...+-+.+.++. .+++++-.|-...+ |+.+.+|.++- .+.-+|=- .++++.+..+++....++
T Consensus 261 ~t~~eai~~~~~l~e~-----~~i~~iEdPl~~~D----~eg~~~L~~~~g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~ 331 (408)
T cd03313 261 LTSEELIDYYKELVKK-----YPIVSIEDPFDEDD----WEGWAKLTAKLGDKIQIVGDDLFVTNPERLKKGIEKKAANA 331 (408)
T ss_pred cCHHHHHHHHHHHHHh-----CCcEEEEeCCCCcC----HHHHHHHHHhcCCCCeEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 4555555545554444 35777877755433 55566666662 44432322 257899999988888888
Q ss_pred eccccCcccccc-cccchhHHHHhCCeEEe
Q 019147 182 VQLEWSLWARDI-ENEIVPLCRELGIGIVP 210 (345)
Q Consensus 182 ~q~~~n~~~~~~-~~~~~~~~~~~gi~v~a 210 (345)
+|+..|-+-.-. -.++...|+.+|+.++.
T Consensus 332 v~ik~~~iGGite~~~ia~lA~~~G~~~~~ 361 (408)
T cd03313 332 LLIKVNQIGTLTETIEAIKLAKKNGYGVVV 361 (408)
T ss_pred EEEcccccCCHHHHHHHHHHHHHcCCeEEc
Confidence 888777543211 15788999999999864
No 291
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.24 E-value=4.4e+02 Score=25.00 Aligned_cols=82 Identities=11% Similarity=0.044 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHHHc-CC---cceEec--CCCcHHHHHHHhh---cCCCceeccccCccccc-----cc---ccchhHH
Q 019147 139 VPIEETIGEMKKLVEE-GK---IKYIGL--SEASPDTIRRAHA---VHPITAVQLEWSLWARD-----IE---NEIVPLC 201 (345)
Q Consensus 139 ~~~~~~~~~l~~l~~~-G~---ir~iGv--S~~~~~~l~~~~~---~~~~~~~q~~~n~~~~~-----~~---~~~~~~~ 201 (345)
.+++++.+++.++.++ |+ +-++=+ -|.+.+++.++.+ ..+..++-++||+.... .. ..+.+..
T Consensus 223 ~~l~el~~a~~~~~~~~grri~~EyvLl~GVNDs~e~a~~L~~~l~~~~~~vNLIPyN~v~g~~~~rp~~~~i~~f~~~L 302 (344)
T PRK14464 223 IAPEELVELGEAYARATGYPIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLIPYNSVDGDAYRRPSGERIVAMARYL 302 (344)
T ss_pred CCHHHHHHHHHHHHHHHCCEEEEEEEEeCCCCCCHHHHHHHHHHHhccccccceecCCccCCCCccCCCHHHHHHHHHHH
Confidence 3678888888877644 42 123322 2566666655544 35677889999985432 11 3566677
Q ss_pred HHhCCeEEeecCCCCcccC
Q 019147 202 RELGIGIVPYCPLGRGFFG 220 (345)
Q Consensus 202 ~~~gi~v~a~spl~~G~L~ 220 (345)
+++||.+......+..+..
T Consensus 303 ~~~gi~~tiR~~~G~di~a 321 (344)
T PRK14464 303 HRRGVLTKVRNSAGQDVDG 321 (344)
T ss_pred HHCCceEEEECCCCCchhh
Confidence 7899999998888765443
No 292
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=21.17 E-value=5.3e+02 Score=26.22 Aligned_cols=98 Identities=13% Similarity=0.052 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEec----CCC--cHHHHHHHhhcCCCcee
Q 019147 109 EYVRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGL----SEA--SPDTIRRAHAVHPITAV 182 (345)
Q Consensus 109 ~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGv----S~~--~~~~l~~~~~~~~~~~~ 182 (345)
+...+-|+..++..+-.+.+--.+---.....+.+.+.-|-+++++|+||.+.+ ++- ....+....+..|-+++
T Consensus 360 ~~~~~vIe~A~e~~~~r~~~~~~ivvGFs~~~il~a~d~lielI~sGkIKgv~~v~GCd~~~~~~~yvt~~keliprD~l 439 (576)
T COG1151 360 EDFSEVIEMAIENFKNRKSEKHKIVVGFSHESILAAADPLIELIASGKIKGVVVVVGCDGLRSGRHYVTLFKELIPRDIL 439 (576)
T ss_pred hhHHHHHHHHHhccCCcccccceeEEeecHHHHHHHHHHHHHHHhcCCcceEEEEeeCCCCCCCcccHHHHHHhcccceE
Confidence 667788899999888777761111000011224456777889999999998854 331 11234444444443443
Q ss_pred ccccCcccccccccchhHHHHhCCeE
Q 019147 183 QLEWSLWARDIENEIVPLCRELGIGI 208 (345)
Q Consensus 183 q~~~n~~~~~~~~~~~~~~~~~gi~v 208 (345)
-+..-- -...-.-+++|...||+-
T Consensus 440 VLt~GC--gk~~~~~~~vc~~lGIPp 463 (576)
T COG1151 440 VLTLGC--GKYRFNKADVGDILGIPR 463 (576)
T ss_pred EEeccc--chhhhhhhccccccCCCc
Confidence 322111 111112347788888774
No 293
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=20.94 E-value=2e+02 Score=27.71 Aligned_cols=80 Identities=11% Similarity=0.054 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhhc-CCCceeccccCccccccc-ccchhHHHHhC-CeEEeecCCCCc
Q 019147 141 IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV-HPITAVQLEWSLWARDIE-NEIVPLCRELG-IGIVPYCPLGRG 217 (345)
Q Consensus 141 ~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~-~~~~~~~~~~g-i~v~a~spl~~G 217 (345)
...+...++++....-|...=+...+.+.++++++. .+..+++.+-|+...-.+ ..+.+.|+++| +.++.=+.++.+
T Consensus 104 Y~~t~~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp 183 (386)
T PF01053_consen 104 YGGTYRLLEELLPRFGVEVTFVDPTDLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATP 183 (386)
T ss_dssp SHHHHHHHHHCHHHTTSEEEEESTTSHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHT
T ss_pred cCcchhhhhhhhcccCcEEEEeCchhHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccce
Confidence 456777777755555555444445577888877764 456677888888765433 68888999998 999998888877
Q ss_pred ccC
Q 019147 218 FFG 220 (345)
Q Consensus 218 ~L~ 220 (345)
++.
T Consensus 184 ~~~ 186 (386)
T PF01053_consen 184 YNQ 186 (386)
T ss_dssp TTC
T ss_pred eee
Confidence 554
No 294
>PRK05406 LamB/YcsF family protein; Provisional
Probab=20.90 E-value=4.1e+02 Score=23.88 Aligned_cols=81 Identities=15% Similarity=0.336 Sum_probs=50.5
Q ss_pred ccccccCcCCCCCCCCHHHHHHHHHHHH-HCCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeecccccc-Ccccc
Q 019147 25 GYGCMSLSGCYNSPLSEEDGISIIKHAF-SKGITFFDTADKYGPYTNEILLGKALKELPRENIQVATKFGFVEL-GFTSV 102 (345)
Q Consensus 25 glG~~~~g~~~~~~~~~~~~~~~l~~A~-~~Gin~~DTA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~-~~~~~ 102 (345)
+||.|.+| ++++.-.+|..|- .+|+ |.| ....+-+.++--....+-|-.--++... ..|+.
T Consensus 13 ~fG~w~~g-------~D~~lmp~IssANIACG~-------HAG---Dp~~M~~tv~lA~~~gV~IGAHPgypD~~gFGRR 75 (246)
T PRK05406 13 SFGAWKMG-------DDEALLPLVTSANIACGF-------HAG---DPAVMRRTVRLAKENGVAIGAHPGYPDLEGFGRR 75 (246)
T ss_pred CCCCCCCC-------CHHHHHHHhhhHHHhccc-------cCC---CHHHHHHHHHHHHHcCCeEccCCCCCccCCCCCC
Confidence 57888765 4567777777773 6665 566 4555666665434556666655554332 22444
Q ss_pred ccCCCHHHHHHHHHHHHhhc
Q 019147 103 IVKGTPEYVRSCCEASLRRL 122 (345)
Q Consensus 103 ~~~~s~~~i~~~ve~SL~~L 122 (345)
..+.+++.++..+...+..|
T Consensus 76 ~m~~s~~el~~~v~yQigAL 95 (246)
T PRK05406 76 NMDLSPEELYALVLYQIGAL 95 (246)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 55678888887776666655
No 295
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=20.86 E-value=4.9e+02 Score=23.34 Aligned_cols=54 Identities=22% Similarity=0.171 Sum_probs=43.8
Q ss_pred CCCHHHHHHHHHHHHhhcCCCceeEEEeecCCCCC-CHHHHHHHHHHHHHcCCcc
Q 019147 105 KGTPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSV-PIEETIGEMKKLVEEGKIK 158 (345)
Q Consensus 105 ~~s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~-~~~~~~~~l~~l~~~G~ir 158 (345)
..+.+...+..+-..+-+++++|-+=.+-..+... +..+++++-|.|+++|-+-
T Consensus 79 c~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~V 133 (262)
T COG2022 79 CRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVV 133 (262)
T ss_pred cCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEE
Confidence 45677778888889999999999998887666543 4568999999999999754
No 296
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=20.67 E-value=6.6e+02 Score=23.04 Aligned_cols=99 Identities=15% Similarity=0.204 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHhhcCCCceeEEEe-ecCCCC-CCH-HH---HHHHHHHHHHcCCcceEecCCCcHHHHHHHhhcCCCc
Q 019147 107 TPEYVRSCCEASLRRLDVEYIDLYYQ-HRVDTS-VPI-EE---TIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPIT 180 (345)
Q Consensus 107 s~~~i~~~ve~SL~~Lg~d~iDl~~l-H~~~~~-~~~-~~---~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~ 180 (345)
+.+.+.+..++.+ .-|-|-||+=-- .+|... .+. +| +...++.++++-.+ -|.|-++.++.++++++.+---
T Consensus 36 ~~~~a~~~a~~~~-~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~-~ISIDT~~~~va~~AL~~Gadi 113 (282)
T PRK11613 36 SLIDAVKHANLMI-NAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEV-WISVDTSKPEVIRESAKAGAHI 113 (282)
T ss_pred CHHHHHHHHHHHH-HCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC-eEEEECCCHHHHHHHHHcCCCE
Confidence 4555555444443 447788887422 234332 222 23 56677777755233 4888899999999999874322
Q ss_pred eeccccCcccccccccchhHHHHhCCeEEeec
Q 019147 181 AVQLEWSLWARDIENEIVPLCRELGIGIVPYC 212 (345)
Q Consensus 181 ~~q~~~n~~~~~~~~~~~~~~~~~gi~v~a~s 212 (345)
+|-+ .+ +. +.++++.++++|..++.+.
T Consensus 114 INDI-~g-~~---d~~~~~~~a~~~~~vVlmh 140 (282)
T PRK11613 114 INDI-RS-LS---EPGALEAAAETGLPVCLMH 140 (282)
T ss_pred EEEC-CC-CC---CHHHHHHHHHcCCCEEEEc
Confidence 2222 12 21 2467888999999998874
No 297
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=20.67 E-value=1.4e+02 Score=25.23 Aligned_cols=65 Identities=22% Similarity=0.205 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhcCCCc----eeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhhcC
Q 019147 111 VRSCCEASLRRLDVEY----IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH 177 (345)
Q Consensus 111 i~~~ve~SL~~Lg~d~----iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~ 177 (345)
.+..++..++++|.+. ++.+.-.+ .......++.+.|+.|+++| ++-.-+||.+...+...++..
T Consensus 61 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~L~~~g-~~~~i~Sn~~~~~~~~~l~~~ 129 (198)
T TIGR01428 61 TREALRYLLGRLGLEDDESAADRLAEAY-LRLPPHPDVPAGLRALKERG-YRLAILSNGSPAMLKSLVKHA 129 (198)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHCC-CeEEEEeCCCHHHHHHHHHHC
Confidence 3456666777777641 11111111 11223456788899999988 455557888877776665543
No 298
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=20.51 E-value=2.2e+02 Score=24.56 Aligned_cols=96 Identities=9% Similarity=0.012 Sum_probs=56.1
Q ss_pred HHHHHHHHHhhcCCCceeEEEeecCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhhcCCCceeccccC-cc
Q 019147 111 VRSCCEASLRRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWS-LW 189 (345)
Q Consensus 111 i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n-~~ 189 (345)
+-+++=+.|.. .-..+..+.+.. .=+...+|.+.|-. .+-..-.+.+.|.++++.....++-+... .-
T Consensus 10 ~G~~v~~~L~~---~~~~V~~l~R~~-------~~~~~~~l~~~g~~-vv~~d~~~~~~l~~al~g~d~v~~~~~~~~~~ 78 (233)
T PF05368_consen 10 QGRSVVRALLS---AGFSVRALVRDP-------SSDRAQQLQALGAE-VVEADYDDPESLVAALKGVDAVFSVTPPSHPS 78 (233)
T ss_dssp HHHHHHHHHHH---TTGCEEEEESSS-------HHHHHHHHHHTTTE-EEES-TT-HHHHHHHHTTCSEEEEESSCSCCC
T ss_pred HHHHHHHHHHh---CCCCcEEEEecc-------chhhhhhhhcccce-EeecccCCHHHHHHHHcCCceEEeecCcchhh
Confidence 33444444444 335677777664 12234556677764 56666667888888887544333333322 11
Q ss_pred cccccccchhHHHHhCCeEEeecCCCCc
Q 019147 190 ARDIENEIVPLCRELGIGIVPYCPLGRG 217 (345)
Q Consensus 190 ~~~~~~~~~~~~~~~gi~v~a~spl~~G 217 (345)
.......++++|++.||..+.+|-++..
T Consensus 79 ~~~~~~~li~Aa~~agVk~~v~ss~~~~ 106 (233)
T PF05368_consen 79 ELEQQKNLIDAAKAAGVKHFVPSSFGAD 106 (233)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEESEESSG
T ss_pred hhhhhhhHHHhhhccccceEEEEEeccc
Confidence 1112368999999999999999888754
No 299
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=20.29 E-value=7.5e+02 Score=23.47 Aligned_cols=39 Identities=10% Similarity=0.274 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHHCCCCeeecC-CCCCCCcHH-HHHHHHHh
Q 019147 39 LSEEDGISIIKHAFSKGITFFDTA-DKYGPYTNE-ILLGKALK 79 (345)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA-~~Yg~G~sE-~~lG~al~ 79 (345)
.+.++..++++...+.||..|+.+ +..+ ..| +.+....+
T Consensus 20 ~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~--~~~~e~i~~i~~ 60 (365)
T TIGR02660 20 FTAAEKLAIARALDEAGVDELEVGIPAMG--EEERAVIRAIVA 60 (365)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCC--HHHHHHHHHHHH
Confidence 477888999999999999999986 2223 244 44544433
No 300
>PLN02522 ATP citrate (pro-S)-lyase
Probab=20.27 E-value=2e+02 Score=29.56 Aligned_cols=84 Identities=21% Similarity=0.057 Sum_probs=48.6
Q ss_pred CcHHHHHHHHHhcCCCCCeEEEeecccccc--Ccc-ccccCC----CHHHHHHHHHHHHhhcCCCceeEEEeecCCCCCC
Q 019147 68 YTNEILLGKALKELPRENIQVATKFGFVEL--GFT-SVIVKG----TPEYVRSCCEASLRRLDVEYIDLYYQHRVDTSVP 140 (345)
Q Consensus 68 G~sE~~lG~al~~~~R~~~~I~tK~~~~~~--~~~-~~~~~~----s~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~~~~ 140 (345)
|..|+.+-+++++..+.+-+|+-|.|.... ..+ ...+.. +-...-+..+..|++-|+-.+| ....
T Consensus 234 g~~e~~f~ea~~~a~~~KPVVa~kaGrsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~aGv~vv~--------s~~E 305 (608)
T PLN02522 234 GRDEYSLVEALKQGKVSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGAIVPT--------SFEA 305 (608)
T ss_pred chhHHHHHHHHHHhcCCCCEEEEeccCCCccCccccccccccccccCCCccHHHHHHHHHHCCCeEeC--------CHHH
Confidence 467888888888755889999999997652 111 001100 0112225567778888743322 2111
Q ss_pred H-HHHHHHHHHHHHcCCcce
Q 019147 141 I-EETIGEMKKLVEEGKIKY 159 (345)
Q Consensus 141 ~-~~~~~~l~~l~~~G~ir~ 159 (345)
+ +-+.+.+++|+.+|.|.-
T Consensus 306 l~~~~~~~~~~~~~~~~~~~ 325 (608)
T PLN02522 306 LEAAIKETFEKLVEEGKIIP 325 (608)
T ss_pred HHHHHHHHHHHHHhCCceee
Confidence 2 224556788888887765
No 301
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=20.27 E-value=6.2e+02 Score=22.54 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHHCCCCeeecCCCCCCCcHH-HHHHHHH
Q 019147 39 LSEEDGISIIKHAFSKGITFFDTADKYGPYTNE-ILLGKAL 78 (345)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~G~sE-~~lG~al 78 (345)
.+.++..++++.-.+.||..|+..-.. .+..+ +.+.+..
T Consensus 17 ~~~~~k~~i~~~L~~~Gv~~iE~g~p~-~~~~~~e~~~~l~ 56 (259)
T cd07939 17 FSREEKLAIARALDEAGVDEIEVGIPA-MGEEEREAIRAIV 56 (259)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCC-CCHHHHHHHHHHH
Confidence 467889999999999999999986221 22354 4444443
No 302
>PRK15005 universal stress protein F; Provisional
Probab=20.25 E-value=3.5e+02 Score=21.03 Aligned_cols=27 Identities=7% Similarity=0.171 Sum_probs=20.1
Q ss_pred cccccccccchhHHHHhCCeEEeecCC
Q 019147 188 LWARDIENEIVPLCRELGIGIVPYCPL 214 (345)
Q Consensus 188 ~~~~~~~~~~~~~~~~~gi~v~a~spl 214 (345)
+....+.+.++++++++++.++..+.-
T Consensus 90 v~~G~p~~~I~~~a~~~~~DLIV~Gs~ 116 (144)
T PRK15005 90 VEEGSPKDRILELAKKIPADMIIIASH 116 (144)
T ss_pred EeCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 334444578999999999999887654
No 303
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=20.19 E-value=5.7e+02 Score=22.11 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhhcCCCceeEEEeecCCC-----CCCHHHHHHHHH
Q 019147 108 PEYVRSCCEASLRRLDVEYIDLYYQHRVDT-----SVPIEETIGEMK 149 (345)
Q Consensus 108 ~~~i~~~ve~SL~~Lg~d~iDl~~lH~~~~-----~~~~~~~~~~l~ 149 (345)
.....+.++.+++.|..+..|++.|.-... ..+++++.+.|.
T Consensus 104 ~~aa~~~w~~a~~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~ 150 (198)
T COG2109 104 IAAAKAGWEHAKEALADGKYDLVILDELNYALRYGLLPLEEVVALLK 150 (198)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHh
Confidence 356677788888888877888888875532 234556655555
No 304
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.14 E-value=4.6e+02 Score=24.74 Aligned_cols=89 Identities=12% Similarity=0.092 Sum_probs=53.9
Q ss_pred EEeecCCCC-----------CCHHHHHHHHHHHHHcCC---cceEecC--CCcHHHHHH---HhhcCCCceeccccCccc
Q 019147 130 YYQHRVDTS-----------VPIEETIGEMKKLVEEGK---IKYIGLS--EASPDTIRR---AHAVHPITAVQLEWSLWA 190 (345)
Q Consensus 130 ~~lH~~~~~-----------~~~~~~~~~l~~l~~~G~---ir~iGvS--~~~~~~l~~---~~~~~~~~~~q~~~n~~~ 190 (345)
+-||.+++. .+++++++++..+.+.|+ ++++=+. |.+.+++++ +++..+..++-++||+..
T Consensus 208 iSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~rri~ieyvLI~GvNDseeda~~La~llk~l~~~vnlI~~N~~~ 287 (336)
T PRK14470 208 ISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALRGRVTLEYVMISGVNVGEEDAAALGRLLAGIPVRLNPIAVNDAT 287 (336)
T ss_pred EecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhCCCeEEEEEEEecccCCHHHHHHHHHHHhcCCCeEEEeccCCCC
Confidence 567887432 256788899988887654 2333222 345555544 444455678899999854
Q ss_pred ccc----c---ccchhHH--HHhCCeEEeecCCCCcc
Q 019147 191 RDI----E---NEIVPLC--RELGIGIVPYCPLGRGF 218 (345)
Q Consensus 191 ~~~----~---~~~~~~~--~~~gi~v~a~spl~~G~ 218 (345)
... + ....+.. +++||.+..+...+..+
T Consensus 288 ~~~~~p~~~~i~~f~~~l~~~~~g~~~~~R~~~G~di 324 (336)
T PRK14470 288 GRYRPPDEDEWNAFRDALARELPGTPVVRRYSGGQDE 324 (336)
T ss_pred CCccCCCHHHHHHHHHHHHHccCCeEEEEECCCCCCh
Confidence 321 1 2344445 35688888877776544
No 305
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=20.06 E-value=2.3e+02 Score=27.26 Aligned_cols=95 Identities=14% Similarity=0.169 Sum_probs=53.5
Q ss_pred HCCCCeee-----cCCCCCCCcHHHHHHHHHhcCCCCCeEEEeeccccccCcc-ccccCCC----HHHHHHHHHHHHhhc
Q 019147 53 SKGITFFD-----TADKYGPYTNEILLGKALKELPRENIQVATKFGFVELGFT-SVIVKGT----PEYVRSCCEASLRRL 122 (345)
Q Consensus 53 ~~Gin~~D-----TA~~Yg~G~sE~~lG~al~~~~R~~~~I~tK~~~~~~~~~-~~~~~~s----~~~i~~~ve~SL~~L 122 (345)
+.+..-+| ++.-+.. ++..|.+.++.....=+||-||+...-.... .....++ -+.|++.+.+.|++-
T Consensus 109 ~~~~~~yD~fiii~s~rf~~--ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~ 186 (376)
T PF05049_consen 109 EVKFYRYDFFIIISSERFTE--NDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKA 186 (376)
T ss_dssp HTTGGG-SEEEEEESSS--H--HHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCT
T ss_pred HccccccCEEEEEeCCCCch--hhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHc
Confidence 45666555 3444543 8888899998755556789999875221100 0011233 357788899999999
Q ss_pred CCCceeEEEeecCCCC-CCHHHHHHHHH
Q 019147 123 DVEYIDLYYQHRVDTS-VPIEETIGEMK 149 (345)
Q Consensus 123 g~d~iDl~~lH~~~~~-~~~~~~~~~l~ 149 (345)
|+....+|++-+.+.. .++..+.++|+
T Consensus 187 gv~~P~VFLVS~~dl~~yDFp~L~~tL~ 214 (376)
T PF05049_consen 187 GVSEPQVFLVSSFDLSKYDFPKLEETLE 214 (376)
T ss_dssp T-SS--EEEB-TTTTTSTTHHHHHHHHH
T ss_pred CCCcCceEEEeCCCcccCChHHHHHHHH
Confidence 9999999999888754 45555555544
Done!