BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019148
(345 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R8W6|LC7L3_PONAB Luc7-like protein 3 OS=Pongo abelii GN=LUC7L3 PE=2 SV=1
Length = 432
Score = 195 bits (495), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 100/245 (40%), Positives = 150/245 (61%), Gaps = 7/245 (2%)
Query: 1 MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPC 60
M + LLDELMG RNL +EK+ ++WD + VC +Y+ FCP +LF NTRSDLGPC
Sbjct: 1 MISAAQLLDELMGRDRNLAPDEKR--SNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPC 58
Query: 61 PRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERL--SQEVEPA 118
+IHD+ L++ +EKS R +E + ++ + L+ +++RR+RRG RL SQ + +
Sbjct: 59 EKIHDENLRKQYEKSSRF--MKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSS 116
Query: 119 PPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQS 178
+ + E++ VL +KI LL+Q+E LG GKV+EA+ +M+ VE L E+ L +
Sbjct: 117 GAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTT 176
Query: 179 QNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKE 238
+ AQEK+M +CE+CG+FL+ DA R H+ GKQH+GY ++ + E KE
Sbjct: 177 STIESFA-AQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLR 235
Query: 239 KAREE 243
K EE
Sbjct: 236 KRTEE 240
>sp|O95232|LC7L3_HUMAN Luc7-like protein 3 OS=Homo sapiens GN=LUC7L3 PE=1 SV=2
Length = 432
Score = 195 bits (495), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 100/245 (40%), Positives = 150/245 (61%), Gaps = 7/245 (2%)
Query: 1 MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPC 60
M + LLDELMG RNL +EK+ ++WD + VC +Y+ FCP +LF NTRSDLGPC
Sbjct: 1 MISAAQLLDELMGRDRNLAPDEKR--SNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPC 58
Query: 61 PRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERL--SQEVEPA 118
+IHD+ L++ +EKS R +E + ++ + L+ +++RR+RRG RL SQ + +
Sbjct: 59 EKIHDENLRKQYEKSSRF--MKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSS 116
Query: 119 PPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQS 178
+ + E++ VL +KI LL+Q+E LG GKV+EA+ +M+ VE L E+ L +
Sbjct: 117 GAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTT 176
Query: 179 QNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKE 238
+ AQEK+M +CE+CG+FL+ DA R H+ GKQH+GY ++ + E KE
Sbjct: 177 STIESFA-AQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLR 235
Query: 239 KAREE 243
K EE
Sbjct: 236 KRTEE 240
>sp|Q3SX41|LC7L3_BOVIN Luc7-like protein 3 OS=Bos taurus GN=LUC7L3 PE=2 SV=1
Length = 432
Score = 194 bits (493), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 100/245 (40%), Positives = 150/245 (61%), Gaps = 7/245 (2%)
Query: 1 MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPC 60
M + LLDELMG RNL +EK+ ++WD + VC +Y+ FCP +LF NTRSDLGPC
Sbjct: 1 MISAAQLLDELMGRDRNLAPDEKR--SNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPC 58
Query: 61 PRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERL--SQEVEPA 118
+IHD+ L++ +EKS R +E + ++ + L+ +++RR+RRG RL SQ + +
Sbjct: 59 EKIHDENLRKQYEKSSRF--MKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSS 116
Query: 119 PPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQS 178
+ + E++ VL +KI LL+Q+E LG GKV+EA+ +M+ VE L E+ L +
Sbjct: 117 GAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTT 176
Query: 179 QNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKE 238
+ AQEK+M +CE+CG+FL+ DA R H+ GKQH+GY ++ + E KE
Sbjct: 177 STIESFA-AQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLR 235
Query: 239 KAREE 243
K EE
Sbjct: 236 KRTEE 240
>sp|Q5SUF2|LC7L3_MOUSE Luc7-like protein 3 OS=Mus musculus GN=Luc7l3 PE=1 SV=1
Length = 432
Score = 193 bits (491), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 100/245 (40%), Positives = 150/245 (61%), Gaps = 7/245 (2%)
Query: 1 MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPC 60
M + LLDELMG RNL +EK+ ++WD + VC +Y+ FCP +LF NTRSDLGPC
Sbjct: 1 MISAAQLLDELMGRDRNLAPDEKR--SNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPC 58
Query: 61 PRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERL--SQEVEPA 118
+IHD+ L++ +EKS R +E + ++ + L+ +++RR+RRG RL SQ + +
Sbjct: 59 EKIHDENLRKQYEKSSRF--MKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSS 116
Query: 119 PPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQS 178
+ + E++ VL +KI LL+Q+E LG GKV+EA+ +M+ VE L E+ L +
Sbjct: 117 GAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTT 176
Query: 179 QNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKE 238
+ AQEK+M +CE+CG+FL+ DA R H+ GKQH+GY ++ + E KE
Sbjct: 177 STIESFA-AQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLR 235
Query: 239 KAREE 243
K EE
Sbjct: 236 KRTEE 240
>sp|Q54XQ8|LUC7L_DICDI Luc7-like protein OS=Dictyostelium discoideum GN=crop PE=3 SV=1
Length = 360
Score = 149 bits (376), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 147/263 (55%), Gaps = 33/263 (12%)
Query: 1 MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRS-DLGP 59
MDA RA LDE +G RNL +++ + E ++D ++C F++ CPH+LF N DLGP
Sbjct: 1 MDAIRAQLDEFLGKDRNLLPKDRIKV-ENDFNDPDICKFFLCGLCPHELFTNANIRDLGP 59
Query: 60 CPRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVE--- 116
C ++HD+ + ++ + D Y +E E + E L+ D D++++R +ERL Q
Sbjct: 60 CSKLHDENCVKQYQNNKDKDKY--DYEREWVRVIEGLISDNDKKIKRNKERLLQNPNGDA 117
Query: 117 -----PAPPPPISA------------EKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEA 159
P IS E++ +++ L+ KI+ LL++ E LGE G++ EA+A
Sbjct: 118 NHHGGPIQQQSISQLDDEEGGLLPDKEQNSKITELDLKIQELLKKAEELGEEGQITEAQA 177
Query: 160 LMRKVEILNVEKTTL--TQQSQNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISG 217
LM + + L +K L +Q +N + K+M++CEICG+ L D +R+ SH+ G
Sbjct: 178 LMTEADELKNQKVELEKIEQEKN-------ENKRMSVCEICGALLFVGDKEKRSISHLEG 230
Query: 218 KQHIGYGMVRDFITEYKEAKEKA 240
K+HIG+ +R+ + EY ++ +A
Sbjct: 231 KKHIGFQKIREVMEEYYKSGRRA 253
>sp|Q9CYI4|LUC7L_MOUSE Putative RNA-binding protein Luc7-like 1 OS=Mus musculus GN=Luc7l
PE=2 SV=2
Length = 371
Score = 132 bits (331), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 127/232 (54%), Gaps = 13/232 (5%)
Query: 1 MDAQ---RALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDL 57
M AQ RALLD+LMG AR+ E ++ +K+ D VC +++ CPHD+ TR DL
Sbjct: 1 MSAQAQMRALLDQLMGTARDGDETRQR----VKFTDDRVCKSHLLDCCPHDILAGTRMDL 56
Query: 58 GPCPRIHDQKLKESFE-KSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVE 116
G C +IHD L+ +E S D + FE + E + + DRR ++RL+ E +
Sbjct: 57 GECTKIHDLALRADYEIASKERDLF---FELDAMDHLESFIAECDRRTELAKKRLA-ETQ 112
Query: 117 PAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQ 176
+SA K+E++ L E+I LL + E LG G VDE++ ++ +VE + +K +
Sbjct: 113 EEISAEVSA-KAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEE 171
Query: 177 QSQNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRD 228
+ +N Q++K+ +CE+C ++L +D R H GK H+G+ +R+
Sbjct: 172 EYRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIRE 223
>sp|Q9NQ29|LUC7L_HUMAN Putative RNA-binding protein Luc7-like 1 OS=Homo sapiens GN=LUC7L
PE=1 SV=1
Length = 371
Score = 131 bits (330), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 127/232 (54%), Gaps = 13/232 (5%)
Query: 1 MDAQ---RALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDL 57
M AQ RALLD+LMG AR+ E ++ +K+ D VC +++ CPHD+ TR DL
Sbjct: 1 MSAQAQMRALLDQLMGTARDGDETRQR----VKFTDDRVCKSHLLDCCPHDILAGTRMDL 56
Query: 58 GPCPRIHDQKLKESFE-KSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVE 116
G C +IHD L+ +E S D + FE + E + + DRR ++RL+ E +
Sbjct: 57 GECTKIHDLALRADYEIASKERDLF---FELDAMDHLESFIAECDRRTELAKKRLA-ETQ 112
Query: 117 PAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQ 176
+SA K+E++ L E+I LL + E LG G VDE++ ++ +VE + +K +
Sbjct: 113 EEISAEVSA-KAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEE 171
Query: 177 QSQNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRD 228
+ +N Q++K+ +CE+C ++L +D R H GK H+G+ +R+
Sbjct: 172 EYRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIRE 223
>sp|Q7TNC4|LC7L2_MOUSE Putative RNA-binding protein Luc7-like 2 OS=Mus musculus GN=Luc7l2
PE=1 SV=1
Length = 392
Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 126/237 (53%), Gaps = 11/237 (4%)
Query: 1 MDAQ---RALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDL 57
M AQ RA+LD+LMG +R+ ++ IK+ D VC +++ CPHD+ TR DL
Sbjct: 1 MSAQAQMRAMLDQLMGTSRDGDTTRQR----IKFSDDRVCKSHLLNCCPHDVLSGTRMDL 56
Query: 58 GPCPRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEP 117
G C ++HD L+ +E + + + FE + + + D DRR ++RL++ E
Sbjct: 57 GECLKVHDLALRADYEIASKEQDFF--FELDAMDHLQSFIADCDRRTEVSKKRLAETQEE 114
Query: 118 APPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQ 177
A K+E++ L E+I LL +VE LG G V+E++ +M +VE +K +
Sbjct: 115 ISAEV--AAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEV 172
Query: 178 SQNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYK 234
+N Q++K+ +CE+C ++L +D R H GK H+G+ +R+ + E K
Sbjct: 173 YRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELK 229
>sp|Q9Y383|LC7L2_HUMAN Putative RNA-binding protein Luc7-like 2 OS=Homo sapiens GN=LUC7L2
PE=1 SV=2
Length = 392
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 126/237 (53%), Gaps = 11/237 (4%)
Query: 1 MDAQ---RALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDL 57
M AQ RA+LD+LMG +R+ ++ IK+ D VC +++ CPHD+ TR DL
Sbjct: 1 MSAQAQMRAMLDQLMGTSRDGDTTRQR----IKFSDDRVCKSHLLNCCPHDVLSGTRMDL 56
Query: 58 GPCPRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEP 117
G C ++HD L+ +E + + + FE + + + D DRR ++RL++ E
Sbjct: 57 GECLKVHDLALRADYEIASKEQDFF--FELDAMDHLQSFIADCDRRTEVAKKRLAETQEE 114
Query: 118 APPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQ 177
A K+E++ L E+I LL +VE LG G V+E++ +M +VE +K +
Sbjct: 115 ISAEV--AAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEV 172
Query: 178 SQNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYK 234
+N Q++K+ +CE+C ++L +D R H GK H+G+ +R+ + E K
Sbjct: 173 YRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELK 229
>sp|Q9USM4|LUC7_SCHPO U1 snRNP-associated protein usp106 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=usp106 PE=1 SV=1
Length = 264
Score = 95.1 bits (235), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 127/250 (50%), Gaps = 25/250 (10%)
Query: 4 QRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPCPRI 63
QR ++++LMG+ NL+ + + + D++VC ++ CPHD+F NT+ DLGPCP+I
Sbjct: 5 QRKIIEQLMGS--NLSNFTSRGL--VHFTDRKVCRSFLCGICPHDIFTNTKMDLGPCPKI 60
Query: 64 HDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPI 123
H KLK +E++ Y +E + + E+ V D ++R+ R + E
Sbjct: 61 HSDKLKSDYERASYSHDY--GYEWDYLEDLERHVDDCNKRIDIAEARREKTKEEEERID- 117
Query: 124 SAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKV 183
E + + I+ ++ ++E L + V++A ++ LN KT ++ D+V
Sbjct: 118 --ELMRDIIHTDHSIEVIITEMEALAKRKLVNDA---VKHFIELNRLKT--YRKELYDEV 170
Query: 184 LMM--------AQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYK- 234
+ M +K+ +C+IC ++L D R H SGK H+GY M+R+ + +
Sbjct: 171 ISMNEIPSQASTTHQKLQVCDICSAYLSRLDNDRRLADHFSGKMHLGYAMLRNIARDLRA 230
Query: 235 --EAKEKARE 242
E +EK+R+
Sbjct: 231 QLEDREKSRD 240
>sp|Q07508|LUC7_YEAST Protein LUC7 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=LUC7 PE=1 SV=1
Length = 261
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 114/228 (50%), Gaps = 7/228 (3%)
Query: 4 QRALLDELMGAARNLTEEEKKEYK-EIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPCPR 62
QR L+++LMG + K ++ D ++C Y+V CP+DLF T+ LG CP+
Sbjct: 11 QRKLVEQLMGRDFSFRHNRYSHQKRDLGLHDPKICKSYLVGECPYDLFQGTKQSLGKCPQ 70
Query: 63 IHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPP 122
+H K K +E+ + P+FE E + V + + ++ + L E
Sbjct: 71 MHLTKHKIQYEREVKQGKTFPEFEREYLAILSRFVNECNGQISVALQNLKHTAEERMKIQ 130
Query: 123 ISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQN-- 180
+ +E+L VL+ +I + +++++L A +V K++ L ++ + ++ +N
Sbjct: 131 ---QVTEELDVLDVRIGLMGQEIDSLIRADEVSMGMLQSVKLQELISKRKEVAKRVRNIT 187
Query: 181 DKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRD 228
+ V AQ+ K+ +CE+CG++L D R H GK H+GY +R+
Sbjct: 188 ENVGQSAQQ-KLQVCEVCGAYLSRLDTDRRLADHFLGKIHLGYVKMRE 234
>sp|Q09217|YP68_CAEEL Uncharacterized protein B0495.8 OS=Caenorhabditis elegans
GN=B0495.8 PE=2 SV=1
Length = 313
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 123/245 (50%), Gaps = 11/245 (4%)
Query: 2 DAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTR-SDLGPC 60
D R ++ +LMG+ + KE + +D VC +++ CPHD+ ++R ++ C
Sbjct: 3 DQMRDMIAQLMGSQHV----DNKEKPSMPFDHHSVCRAFLLGVCPHDMVPDSRLQNVVSC 58
Query: 61 PRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPP 120
++H+ K +E++ + + ++ + + E V +D + + RE+L +V+
Sbjct: 59 RKVHEPAHKADYERAQKEKDHF--YDVDAFEIIEHAVHLVDIEIAKVREKLEDDVKTQTS 116
Query: 121 PPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQN 180
+ K++Q++ +EEKI ++ +E LG GK++E+ L + VE L EK + SQ
Sbjct: 117 QAADS-KAKQVAEIEEKIAKNVDDIEKLGNEGKIEESMKLHKYVEELR-EKIQEIEDSQT 174
Query: 181 DKVLMM--AQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKE 238
+ + K+ +CE CG+ L D R H +GK HIG R+ + KE +
Sbjct: 175 EVKTAGPGSNSAKLRVCEDCGAQLNITDHESRIADHYNGKMHIGMVETRETYLKMKETID 234
Query: 239 KAREE 243
+ R+E
Sbjct: 235 ERRKE 239
>sp|O23212|U2A2A_ARATH Splicing factor U2af large subunit A OS=Arabidopsis thaliana
GN=U2AF65A PE=2 SV=2
Length = 573
Score = 39.3 bits (90), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 55/114 (48%), Gaps = 18/114 (15%)
Query: 220 HIGYGMVRDFITEYKEAKEKAREEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRD 279
H G G V D I +EE ++ E+ED+ + K ESR D +R
Sbjct: 7 HEGNGTVADAI----------YDEENGGRDGEIEDQLDSKPKR-ESR------DHERETS 49
Query: 280 RDRDRERERYRERDRERSREWDGRSGRDGGRGADWRSRDRHRD-RSRSRSPVRH 332
R +DRERE+ R++DRER E RS G + RSRD+ RD R R RH
Sbjct: 50 RSKDREREKGRDKDRERDSEVSRRSRDRDGEKSKERSRDKDRDHRERHHRSSRH 103
>sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1
Length = 2876
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 60/104 (57%), Gaps = 20/104 (19%)
Query: 238 EKAREEERLAKEKEVE-DRRKQREKEYE-----SRKRSGSSDRDRYRDRDRD----RERE 287
EKARE++ ++KE+E R K ++KE E R + DRD+ RD+DRD ++R+
Sbjct: 811 EKAREKD---QDKELEKGREKDQDKELEKGQEKDRDKVREKDRDKVRDKDRDKVREKDRD 867
Query: 288 RYRERDRERSREWDGRSGRDGGRGADWRSRDRHRDRSRSRSPVR 331
+ RE+DR++ RE D R+ R RD+ R++ R + V+
Sbjct: 868 KVREKDRDKLREKDREKIRE-------RDRDKGREKDRDKEQVK 904
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 64/113 (56%), Gaps = 10/113 (8%)
Query: 238 EKAREEERLAKEKEVE-DRRKQREKEYE-SRKRSGSSDRDRYRDRDRDRERERYRERDR- 294
EK RE++ ++KE+E DR K ++KE E R++ + ++ R++DRD+E E+ RE+D+
Sbjct: 763 EKCREKD---QDKELEKDREKNQDKELEKGREKDQDKELEKGREKDRDKEMEKAREKDQD 819
Query: 295 ---ERSREWDGRSGRDGGRGADWRSRDRHRDRSRSRSPVRHGHRRSPRSPVRQ 344
E+ RE D + G+ D R + R +DR + R R R R VR+
Sbjct: 820 KELEKGREKDQDKELEKGQEKD-RDKVREKDRDKVRDKDRDKVREKDRDKVRE 871
>sp|Q6PGZ3|MIPT3_DANRE TRAF3-interacting protein 1 OS=Danio rerio GN=traf3ip1 PE=2 SV=1
Length = 629
Score = 35.8 bits (81), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 13/75 (17%)
Query: 260 EKEYESRKRSGSSDRDRYRDRDRDRERERYRERDRERSREWDGRSGRDGGRGADWRSRDR 319
E+ + R+R + DRDR +D+ RDRE+++ RE++RER ++ + R ++R
Sbjct: 198 ERSDKGRERERTKDRDRDKDKSRDREKDKTREKEREREKDRN-------------REKER 244
Query: 320 HRDRSRSRSPVRHGH 334
RD+ R + R H
Sbjct: 245 ERDKDRDKKKERESH 259
>sp|Q5XIN3|MIPT3_RAT TRAF3-interacting protein 1 OS=Rattus norvegicus GN=Traf3ip1 PE=2
SV=1
Length = 653
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 66/122 (54%), Gaps = 20/122 (16%)
Query: 235 EAKEKAREEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRERDR 294
E KE++ E KE E+++ K REKE + ++++ +DRDR+R+ DRDR R+ RE+ R
Sbjct: 170 EVKERSSSAEHKQKE-ELKEDSKPREKERD-KEKAKEADRDRHREPDRDRNRDGEREKAR 227
Query: 295 ERSREWDGRSGR----------------DGGRGAD-WRSRDRHRDRSRSRSPVRHG-HRR 336
R+++ R+ + DGG+ + + RDR + + R R ++G H R
Sbjct: 228 ARAKQDRDRNNKDRDRETERDRDRDRRSDGGKEKERQKDRDRDKGKDRERRKSKNGEHTR 287
Query: 337 SP 338
P
Sbjct: 288 DP 289
>sp|Q8C9B9|DIDO1_MOUSE Death-inducer obliterator 1 OS=Mus musculus GN=Dido1 PE=1 SV=4
Length = 2256
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 259 REKEYESRKRSGSSDRDRYRDRDRDRERERYRERDRERSREW 300
RE+++E RS DR R D+ RDR R RERD +R++EW
Sbjct: 2143 RERDWE---RSRDWDRHREWDKGRDRSSNRDRERDNDRAKEW 2181
>sp|Q3LSS0|C19L2_DANRE CWF19-like protein 2 OS=Danio rerio GN=cwf19l2 PE=2 SV=1
Length = 960
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 57/117 (48%), Gaps = 24/117 (20%)
Query: 223 YGMVRDFITEYKEAKEKAREEERLAKEKEVEDRRKQREKEYESRKRS----------GSS 272
YG + +F KEA++ A E R + E R +RE+ ES +R+
Sbjct: 256 YGSMEEFQKRLKEAEDAAYGERR-----DDEKERGRREEGKESWRRNDREEGRERWRRDE 310
Query: 273 DRDRYRDRDRDRERERYRERDRERSREWDGRSGRDGGRGADWRSRDRHRDRSRSRSP 329
++DR+R DRD RER+R D + +E R +DG WR R + DR R RSP
Sbjct: 311 EKDRWRRNDRDEGRERWRREDGDEEKE---RWRKDG-----WR-RGENEDRRRERSP 358
>sp|Q9BTC0|DIDO1_HUMAN Death-inducer obliterator 1 OS=Homo sapiens GN=DIDO1 PE=1 SV=5
Length = 2240
Score = 32.0 bits (71), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 5/48 (10%)
Query: 278 RDRDRDRERERYRERDRERSREWDGRSGRDGGRGADWRSRDRHRDRSR 325
R+RD DR RE R RD++ SR+WD R+ R A+ R R+R DR +
Sbjct: 2125 RERDWDRPREWDRHRDKDSSRDWD----RNRERSAN-RDREREADRGK 2167
>sp|B3KS81|SRRM5_HUMAN Serine/arginine repetitive matrix protein 5 OS=Homo sapiens
GN=SRRM5 PE=1 SV=3
Length = 715
Score = 32.0 bits (71), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 280 RDRDRERERYRERDRERSREWDGRSGRDGGRGADWRSRDRHRDRSRSRSPVR---HGHRR 336
RDR R R Y+ RDR RSR + RD R RS + RDRSRSRSP + H R
Sbjct: 411 RDRSRSRSPYKARDRSRSRSPN--KARDCSRS---RSPYKARDRSRSRSPNKARDHSRSR 465
Query: 337 SP 338
SP
Sbjct: 466 SP 467
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,231,888
Number of Sequences: 539616
Number of extensions: 5813251
Number of successful extensions: 88895
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 1589
Number of HSP's that attempted gapping in prelim test: 51446
Number of HSP's gapped (non-prelim): 17298
length of query: 345
length of database: 191,569,459
effective HSP length: 118
effective length of query: 227
effective length of database: 127,894,771
effective search space: 29032113017
effective search space used: 29032113017
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)