Query 019149
Match_columns 345
No_of_seqs 153 out of 1926
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 11:39:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019149.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019149hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 3.1E-55 1.1E-59 393.0 27.6 285 32-331 4-297 (297)
2 2lck_A Mitochondrial uncouplin 100.0 8.7E-55 3E-59 391.0 25.6 275 38-334 4-289 (303)
3 2lck_A Mitochondrial uncouplin 100.0 3.6E-34 1.2E-38 256.8 18.5 184 33-233 102-288 (303)
4 1okc_A ADP, ATP carrier protei 100.0 6E-34 2.1E-38 254.7 19.6 192 130-333 6-203 (297)
5 3tgu_G UQCRQ, mitochondrial ub 34.5 29 0.001 23.4 2.7 44 297-340 32-75 (81)
6 1pp9_G Ubiquinol-cytochrome C 30.2 49 0.0017 22.3 3.2 44 297-340 32-75 (81)
7 3f2e_A SIRV coat protein; four 20.7 97 0.0033 20.4 3.2 34 281-314 6-43 (100)
8 2acm_A Mucin-1; auto-catalytic 13.2 34 0.0012 21.3 -0.4 20 184-203 40-59 (66)
9 1y9i_A Low temperature require 12.8 2.4E+02 0.0081 22.1 4.2 44 104-147 111-158 (178)
10 3vjj_A P9-1; 3.00A {Rice black 9.9 1.7E+02 0.0058 24.6 2.6 36 143-199 273-308 (368)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=3.1e-55 Score=393.03 Aligned_cols=285 Identities=31% Similarity=0.542 Sum_probs=246.1
Q ss_pred chhHHHHHHHHhHHHHhhhhccCchHHHHHHHHhCCC------CCccccHHHHHHHHHHhhchhhhhccchhhhHhhhhh
Q 019149 32 LPVYVKELIAGGAAGAFAKTAVAPFERTKILLQTRTE------GFQSRGVYQSLKKLLKQEGILGFYKGNGASVLRIVPY 105 (345)
Q Consensus 32 ~~~~~~~~~~g~~a~~~~~~i~~Pld~ik~~~q~~~~------~~~~~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~~~ 105 (345)
..+.+..+++|++|++++.++++|+|++|+|+|++.. ...++++++++++++++||++|||||+.+++++.++.
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 4567889999999999999999999999999999864 2357899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCC---CChHHHHHHHHHHHHhhhhhcccHHHHHHHHhhcccccCCCcccCcccccCCCC
Q 019149 106 AALHFMTYEEYRVWIINNYPSMG---SGPVIDLLAGSLAGGTAVLCTYPLDLARTKLAYQVVDTGGSLRSGIRSICAQPA 182 (345)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~a~~~~~~i~~Pld~vk~r~q~~~~~~~~~~~~~~~~~~~~~~ 182 (345)
.+++|.+||.+++.+....+... ......+++|++|++++.++++|+|+||+|+|++.... .....
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~-----------~~~~~ 152 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG-----------AAQRE 152 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS-----------TTTCS
T ss_pred HHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC-----------CcCcC
Confidence 99999999999996543222111 12466789999999999999999999999999974321 11256
Q ss_pred CCCHHHHHHHHHHhhCcccccccchHHHhhHHhhhhHHHHHHHHHHhhCCCccCchhHHHHHHHHHHHHHHhhhcccHHH
Q 019149 183 YSGVKDVLTSVYKEGGIRALYRGIGPTLAGILPYAGLKFYIYEELKRHVPEEHQKSIVMRLSCGAMAGLFGQTFTYPLDV 262 (345)
Q Consensus 183 ~~~~~~~~~~i~~~~G~~glyrG~~~~ll~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~t~Pld~ 262 (345)
|.++++++++|+++||++|||||+.+++++.+++++++|.+||.+++.+.+.++.+....+++|++||++++++++|+|+
T Consensus 153 ~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~P~dv 232 (297)
T 1okc_A 153 FTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDT 232 (297)
T ss_dssp CSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGGCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHhcChHHH
Confidence 89999999999999999999999999999999999999999999999887666667788899999999999999999999
Q ss_pred HHHHHHhhccCCCCCCCCcccCCHHHHHHHHHHhhcHHHhhhchhhhHhhhhhhhhhHHHhHHHHHHhc
Q 019149 263 VRRQMQVEYMKPLSKGGDVRYRNTFEGLAAIVRNQGWKQLFAGLSINYIKIVPSVAIGFTAYDMMKSWL 331 (345)
Q Consensus 263 i~~r~q~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~~ly~G~~~~~~~~~~~~~i~~~~y~~~~~~~ 331 (345)
||+|||.+.... +....|+++++|+++++++||++|||||+.|+++|.. ..+++|.+||.+++.+
T Consensus 233 vktr~q~~~~~~---~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~-~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 233 VRRRMMMQSGRK---GADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGM-GGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHHTTTTCC---GGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHHH-HHHHHHHHHHTC----
T ss_pred HHHHHhhcCCCC---CCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhhc-cceeeehHHHHHHhhC
Confidence 999999875321 1225799999999999999999999999999999964 7899999999998753
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=8.7e-55 Score=390.97 Aligned_cols=275 Identities=21% Similarity=0.367 Sum_probs=249.5
Q ss_pred HHHHHhHHHHhhhhccCchHHHHHHHHhCCC---------CCccccHHHHHHHHHHhhchhhhhccchhhhHhhhhhhhH
Q 019149 38 ELIAGGAAGAFAKTAVAPFERTKILLQTRTE---------GFQSRGVYQSLKKLLKQEGILGFYKGNGASVLRIVPYAAL 108 (345)
Q Consensus 38 ~~~~g~~a~~~~~~i~~Pld~ik~~~q~~~~---------~~~~~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~~~~~~ 108 (345)
.+++|++|++++.++++|+|++|+|+|++.. ..+++++++++++++++||+++||||+.+++++.++..++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999999865 2357899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhhhhhcccHHHHHHHHhhcccccCCCcccCcccccCCCCCCCHHH
Q 019149 109 HFMTYEEYRVWIINNYPSMGSGPVIDLLAGSLAGGTAVLCTYPLDLARTKLAYQVVDTGGSLRSGIRSICAQPAYSGVKD 188 (345)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~Pld~vk~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (345)
+|.+||.+++.+.+.. ...+....+++|++||+++.++++|+|+||+|+|++.... ....|.++++
T Consensus 84 ~f~~ye~~k~~~~~~~--~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~------------~~~~~~~~~~ 149 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGS--EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAG------------GGRRYQSTVE 149 (303)
T ss_dssp TTTHHHHHHHHHSCCC--SSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCC------------CSSSCCCHHH
T ss_pred HHHHHHHHHHHHhcCC--cCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccC------------CCCCCCCHHH
Confidence 9999999999886532 2467788999999999999999999999999999985320 1246899999
Q ss_pred HHHHHHHhhCcccccccchHHHhhHHhhhhHHHHHHHHHHhhCCCcc--CchhHHHHHHHHHHHHHHhhhcccHHHHHHH
Q 019149 189 VLTSVYKEGGIRALYRGIGPTLAGILPYAGLKFYIYEELKRHVPEEH--QKSIVMRLSCGAMAGLFGQTFTYPLDVVRRQ 266 (345)
Q Consensus 189 ~~~~i~~~~G~~glyrG~~~~ll~~~~~~~~~~~~y~~~~~~~~~~~--~~~~~~~~~~g~~ag~~~~~~t~Pld~i~~r 266 (345)
++++|+++||++|||||+.+++++.+++.+++|.+||.+++.+.... +.+....+++|++||++++++++|+|+||+|
T Consensus 150 ~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktr 229 (303)
T 2lck_A 150 AYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTR 229 (303)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999886543 4566788999999999999999999999999
Q ss_pred HHhhccCCCCCCCCcccCCHHHHHHHHHHhhcHHHhhhchhhhHhhhhhhhhhHHHhHHHHHHhcCCC
Q 019149 267 MQVEYMKPLSKGGDVRYRNTFEGLAAIVRNQGWKQLFAGLSINYIKIVPSVAIGFTAYDMMKSWLCIP 334 (345)
Q Consensus 267 ~q~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~~ly~G~~~~~~~~~~~~~i~~~~y~~~~~~~~~~ 334 (345)
+|.+.. ..|+++++|+++++++||++|||||+.|+++|.+|..+++|.+||.+++.+...
T Consensus 230 lq~~~~--------~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~ 289 (303)
T 2lck_A 230 YMNSAL--------GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAA 289 (303)
T ss_dssp HTTCCS--------SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHhccc--------cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 998753 469999999999999999999999999999999999999999999999988653
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=3.6e-34 Score=256.84 Aligned_cols=184 Identities=22% Similarity=0.366 Sum_probs=167.5
Q ss_pred hhHHHHHHHHhHHHHhhhhccCchHHHHHHHHhCCC---CCccccHHHHHHHHHHhhchhhhhccchhhhHhhhhhhhHH
Q 019149 33 PVYVKELIAGGAAGAFAKTAVAPFERTKILLQTRTE---GFQSRGVYQSLKKLLKQEGILGFYKGNGASVLRIVPYAALH 109 (345)
Q Consensus 33 ~~~~~~~~~g~~a~~~~~~i~~Pld~ik~~~q~~~~---~~~~~~~~~~~~~i~~~~G~~gly~G~~~~l~~~~~~~~~~ 109 (345)
++....+++|++|++++.++++|+|++|+|+|++.. ...+++.++++++++++||++|||||+.+++++.++..+++
T Consensus 102 ~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~ 181 (303)
T 2lck_A 102 AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAE 181 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999864 34578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhhhhhcccHHHHHHHHhhcccccCCCcccCcccccCCCCCCCHHHH
Q 019149 110 FMTYEEYRVWIINNYPSMGSGPVIDLLAGSLAGGTAVLCTYPLDLARTKLAYQVVDTGGSLRSGIRSICAQPAYSGVKDV 189 (345)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~Pld~vk~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (345)
|.+||.+++.+.+.. .........+++|++|++++.++++|+|+||+|+|++.. ..|.+++++
T Consensus 182 f~~ye~~k~~l~~~~-~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~----------------~~y~~~~~~ 244 (303)
T 2lck_A 182 LVTYDLIKDTLLKAN-LMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL----------------GQYHSAGHC 244 (303)
T ss_dssp HHHHHHHHHTTTTTT-SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS----------------SSCCSHHHH
T ss_pred HHHHHHHHHHHHhcc-CCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc----------------cccCCHHHH
Confidence 999999999876532 234566788999999999999999999999999998742 358999999
Q ss_pred HHHHHHhhCcccccccchHHHhhHHhhhhHHHHHHHHHHhhCCC
Q 019149 190 LTSVYKEGGIRALYRGIGPTLAGILPYAGLKFYIYEELKRHVPE 233 (345)
Q Consensus 190 ~~~i~~~~G~~glyrG~~~~ll~~~~~~~~~~~~y~~~~~~~~~ 233 (345)
+++|+++||++|||||+.+++++.++..+++|.+||.+++.+..
T Consensus 245 ~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 245 ALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp HHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988754
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=6e-34 Score=254.75 Aligned_cols=192 Identities=23% Similarity=0.361 Sum_probs=165.2
Q ss_pred ChHHHHHHHHHHHHhhhhhcccHHHHHHHHhhcccccCCCcccCcccccCCCCCCCHHHHHHHHHHhhCcccccccchHH
Q 019149 130 GPVIDLLAGSLAGGTAVLCTYPLDLARTKLAYQVVDTGGSLRSGIRSICAQPAYSGVKDVLTSVYKEGGIRALYRGIGPT 209 (345)
Q Consensus 130 ~~~~~~~~g~~a~~~~~~i~~Pld~vk~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~glyrG~~~~ 209 (345)
+....+++|++||+++.++++|+|+||+|+|++..... ......|.++++++++++++||++|||||+.+.
T Consensus 6 ~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~---------~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~ 76 (297)
T 1okc_A 6 SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQ---------ISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLAN 76 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSS---------CCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccc---------cccccccccHHHHHHHHHhccchhheecccHHH
Confidence 45678999999999999999999999999999853211 011246899999999999999999999999999
Q ss_pred HhhHHhhhhHHHHHHHHHHhhC-CCcc-C----chhHHHHHHHHHHHHHHhhhcccHHHHHHHHHhhccCCCCCCCCccc
Q 019149 210 LAGILPYAGLKFYIYEELKRHV-PEEH-Q----KSIVMRLSCGAMAGLFGQTFTYPLDVVRRQMQVEYMKPLSKGGDVRY 283 (345)
Q Consensus 210 ll~~~~~~~~~~~~y~~~~~~~-~~~~-~----~~~~~~~~~g~~ag~~~~~~t~Pld~i~~r~q~~~~~~~~~~~~~~~ 283 (345)
+++.++..+++|.+||.+++.+ ...+ . .+....+++|++||+++.++++|+|+||+|+|.+.... +....|
T Consensus 77 l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~---~~~~~~ 153 (297)
T 1okc_A 77 VIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG---AAQREF 153 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS---TTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC---CcCcCC
Confidence 9999999999999999999853 3221 1 23467899999999999999999999999999985322 122578
Q ss_pred CCHHHHHHHHHHhhcHHHhhhchhhhHhhhhhhhhhHHHhHHHHHHhcCC
Q 019149 284 RNTFEGLAAIVRNQGWKQLFAGLSINYIKIVPSVAIGFTAYDMMKSWLCI 333 (345)
Q Consensus 284 ~~~~~~~~~i~~~eG~~~ly~G~~~~~~~~~~~~~i~~~~y~~~~~~~~~ 333 (345)
.+.++++++++++||++|||||+.+++++.+|..++.|.+||.+++.+..
T Consensus 154 ~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~ 203 (297)
T 1okc_A 154 TGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD 203 (297)
T ss_dssp SSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCG
T ss_pred CCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999997743
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=34.50 E-value=29 Score=23.38 Aligned_cols=44 Identities=11% Similarity=0.154 Sum_probs=33.2
Q ss_pred hcHHHhhhchhhhHhhhhhhhhhHHHhHHHHHHhcCCCCCCCCC
Q 019149 297 QGWKQLFAGLSINYIKIVPSVAIGFTAYDMMKSWLCIPPRQKSK 340 (345)
Q Consensus 297 eG~~~ly~G~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~ 340 (345)
.|+-..+|-+.-.++..+|..++.+.+|+..++......+++++
T Consensus 32 ~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~rKnpa 75 (81)
T 3tgu_G 32 DALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRKNPA 75 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCGG
T ss_pred hhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 45667777777888999999999999999998776444444433
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=30.16 E-value=49 Score=22.27 Aligned_cols=44 Identities=9% Similarity=0.166 Sum_probs=33.5
Q ss_pred hcHHHhhhchhhhHhhhhhhhhhHHHhHHHHHHhcCCCCCCCCC
Q 019149 297 QGWKQLFAGLSINYIKIVPSVAIGFTAYDMMKSWLCIPPRQKSK 340 (345)
Q Consensus 297 eG~~~ly~G~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~~ 340 (345)
.|+-..+|-+.-.++..+|..++++.+|+..++......+++++
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~rKnp~ 75 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRKNPA 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCC-
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 56777888888888899999999999999998776544444443
No 7
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=20.69 E-value=97 Score=20.38 Aligned_cols=34 Identities=12% Similarity=0.434 Sum_probs=21.6
Q ss_pred cccCCHHHHHHHHHHhhcH----HHhhhchhhhHhhhh
Q 019149 281 VRYRNTFEGLAAIVRNQGW----KQLFAGLSINYIKIV 314 (345)
Q Consensus 281 ~~~~~~~~~~~~i~~~eG~----~~ly~G~~~~~~~~~ 314 (345)
+++.+.-+-+..++.+-|+ +.+|.|+...+.|..
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 5566666666667766664 668888887766543
No 8
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=13.21 E-value=34 Score=21.35 Aligned_cols=20 Identities=25% Similarity=0.645 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHHhhCccccc
Q 019149 184 SGVKDVLTSVYKEGGIRALY 203 (345)
Q Consensus 184 ~~~~~~~~~i~~~~G~~gly 203 (345)
+++.+.+.+|++++++.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 55778889999999999886
No 9
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=12.78 E-value=2.4e+02 Score=22.06 Aligned_cols=44 Identities=9% Similarity=0.036 Sum_probs=27.7
Q ss_pred hhhhHHHHHHHHHHHHHHhcCC----CCCCChHHHHHHHHHHHHhhhh
Q 019149 104 PYAALHFMTYEEYRVWIINNYP----SMGSGPVIDLLAGSLAGGTAVL 147 (345)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~g~~a~~~~~~ 147 (345)
....+.|..||..|.......+ ..-....-..++|++|++++.+
T Consensus 111 ~~gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~l 158 (178)
T 1y9i_A 111 SIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRL 158 (178)
T ss_dssp GGGHHHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHHHH
Confidence 4566778888888765433322 1224567778888888776533
No 10
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=9.88 E-value=1.7e+02 Score=24.64 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=27.0
Q ss_pred HhhhhhcccHHHHHHHHhhcccccCCCcccCcccccCCCCCCCHHHHHHHHHHhhCc
Q 019149 143 GTAVLCTYPLDLARTKLAYQVVDTGGSLRSGIRSICAQPAYSGVKDVLTSVYKEGGI 199 (345)
Q Consensus 143 ~~~~~i~~Pld~vk~r~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~ 199 (345)
.++++=-+|||++|..++.. -++...+++.++++|+
T Consensus 273 qLaTFdnypfdllRfqL~Sl---------------------istp~~I~e~i~K~GL 308 (368)
T 3vjj_A 273 QLATFDNYPFDLLRFQLSSL---------------------ISTPALIREKIAKEGL 308 (368)
T ss_dssp HHHHCTTCBHHHHHHHCSSC---------------------CCCCHHHHHHHHHSCS
T ss_pred eeecCCCCCHHHHHHHhhhh---------------------ccChHHHHHHHHhcCc
Confidence 34667789999998877543 4455688899999885
Done!