Query 019150
Match_columns 345
No_of_seqs 86 out of 88
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 07:06:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019150.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019150hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09459 EB_dh: Ethylbenzene d 99.6 1.2E-16 2.6E-21 150.1 3.1 128 178-329 1-154 (261)
2 TIGR03477 DMSO_red_II_gam DMSO 98.3 3.8E-06 8.2E-11 78.1 8.6 103 170-285 9-116 (205)
3 PF04478 Mid2: Mid2 like cell 97.4 0.00017 3.8E-09 64.8 3.8 33 85-117 47-79 (154)
4 PF01102 Glycophorin_A: Glycop 96.9 0.00034 7.3E-09 60.7 1.2 41 78-118 55-95 (122)
5 PTZ00382 Variant-specific surf 96.7 0.0011 2.3E-08 55.1 2.7 35 78-112 57-91 (96)
6 PF08693 SKG6: Transmembrane a 95.6 0.015 3.3E-07 42.0 3.3 28 85-112 9-37 (40)
7 PF02480 Herpes_gE: Alphaherpe 94.3 0.015 3.2E-07 59.7 0.7 26 88-113 353-380 (439)
8 PF03302 VSP: Giardia variant- 94.2 0.034 7.3E-07 56.1 2.9 39 78-116 358-396 (397)
9 PF13908 Shisa: Wnt and FGF in 93.8 0.073 1.6E-06 47.5 3.9 28 85-112 77-104 (179)
10 PF12273 RCR: Chitin synthesis 93.6 0.034 7.5E-07 47.5 1.5 20 99-118 10-29 (130)
11 PF06697 DUF1191: Protein of u 93.5 0.085 1.8E-06 51.7 4.1 36 81-116 207-243 (278)
12 PF05454 DAG1: Dystroglycan (D 93.4 0.022 4.8E-07 55.9 0.0 25 30-57 87-111 (290)
13 PF15102 TMEM154: TMEM154 prot 93.1 0.27 5.9E-06 44.3 6.4 12 83-94 54-65 (146)
14 PF06452 DUF1083: Domain of un 91.6 0.24 5.1E-06 42.7 4.0 54 174-230 1-55 (185)
15 PF04478 Mid2: Mid2 like cell 91.4 0.3 6.5E-06 44.4 4.5 41 76-117 42-82 (154)
16 PF01299 Lamp: Lysosome-associ 91.0 0.15 3.3E-06 49.2 2.5 30 88-117 271-300 (306)
17 PF10873 DUF2668: Protein of u 90.7 0.17 3.6E-06 45.8 2.2 36 81-116 55-91 (155)
18 PF15069 FAM163: FAM163 family 90.6 0.3 6.5E-06 43.9 3.7 25 86-111 5-29 (143)
19 PF07213 DAP10: DAP10 membrane 90.4 0.25 5.4E-06 40.5 2.8 40 79-118 26-65 (79)
20 PF02480 Herpes_gE: Alphaherpe 90.3 0.082 1.8E-06 54.4 0.0 36 81-116 350-386 (439)
21 PF12768 Rax2: Cortical protei 90.3 0.3 6.4E-06 47.6 3.8 20 79-98 219-238 (281)
22 PF14575 EphA2_TM: Ephrin type 90.3 0.15 3.3E-06 40.6 1.5 29 89-117 2-30 (75)
23 PF08374 Protocadherin: Protoc 90.2 0.22 4.7E-06 47.5 2.7 44 160-203 99-142 (221)
24 PF05808 Podoplanin: Podoplani 90.1 0.089 1.9E-06 48.0 0.0 33 80-112 122-155 (162)
25 PF07204 Orthoreo_P10: Orthore 89.1 0.16 3.4E-06 43.0 0.8 22 95-116 48-69 (98)
26 PF15345 TMEM51: Transmembrane 88.8 0.44 9.6E-06 45.8 3.6 35 79-117 52-86 (233)
27 PF02439 Adeno_E3_CR2: Adenovi 88.2 0.29 6.2E-06 35.2 1.4 9 90-98 6-14 (38)
28 cd00005 CBM9 Family 9 carbohyd 87.9 0.77 1.7E-05 41.4 4.4 53 167-226 5-58 (186)
29 PF01034 Syndecan: Syndecan do 87.5 0.18 3.8E-06 39.9 0.1 9 90-98 12-20 (64)
30 PF05393 Hum_adeno_E3A: Human 86.7 0.4 8.8E-06 40.3 1.8 43 83-125 26-68 (94)
31 COG3889 Predicted solute bindi 86.5 1 2.2E-05 49.9 5.1 27 87-113 844-870 (872)
32 PF02009 Rifin_STEVOR: Rifin/s 83.1 0.39 8.4E-06 47.4 0.1 31 86-116 255-285 (299)
33 PF13908 Shisa: Wnt and FGF in 82.5 1.4 3.1E-05 39.3 3.5 34 85-118 73-107 (179)
34 PF05454 DAG1: Dystroglycan (D 81.8 0.44 9.6E-06 46.9 0.0 15 100-114 159-173 (290)
35 PF12877 DUF3827: Domain of un 81.5 2 4.3E-05 46.7 4.7 36 80-116 263-298 (684)
36 PF08693 SKG6: Transmembrane a 80.8 0.51 1.1E-05 34.2 0.0 35 84-118 5-40 (40)
37 PHA03265 envelope glycoprotein 80.8 1.5 3.3E-05 44.8 3.3 12 47-58 277-288 (402)
38 PF04689 S1FA: DNA binding pro 79.1 2.6 5.7E-05 33.7 3.5 54 81-134 7-62 (69)
39 PF06679 DUF1180: Protein of u 78.6 5.3 0.00012 36.5 5.8 15 99-114 107-121 (163)
40 PF02439 Adeno_E3_CR2: Adenovi 77.2 1.7 3.8E-05 31.2 1.8 28 85-112 4-31 (38)
41 PF15065 NCU-G1: Lysosomal tra 77.0 0.89 1.9E-05 45.9 0.4 36 83-118 314-350 (350)
42 PF05568 ASFV_J13L: African sw 76.8 1.5 3.2E-05 40.3 1.7 25 92-116 34-58 (189)
43 PHA03283 envelope glycoprotein 75.5 2.8 6.2E-05 44.6 3.6 38 86-124 400-437 (542)
44 PF04906 Tweety: Tweety; Inte 75.4 1.6 3.4E-05 44.5 1.7 20 99-118 34-53 (406)
45 PF06809 NPDC1: Neural prolife 75.1 10 0.00022 38.5 7.1 25 92-116 203-228 (341)
46 PHA03281 envelope glycoprotein 73.0 6.2 0.00013 42.6 5.3 29 82-110 548-577 (642)
47 PF02158 Neuregulin: Neureguli 72.7 1.2 2.5E-05 45.9 0.0 30 86-116 9-38 (404)
48 PF10577 UPF0560: Uncharacteri 70.4 2.2 4.7E-05 47.3 1.4 26 87-112 273-299 (807)
49 PF14610 DUF4448: Protein of u 70.1 16 0.00034 33.1 6.7 12 27-38 86-97 (189)
50 PF06365 CD34_antigen: CD34/Po 67.1 9 0.0002 36.2 4.6 30 88-117 101-132 (202)
51 PF12191 stn_TNFRSF12A: Tumour 66.8 2.3 5E-05 37.8 0.6 40 84-123 75-115 (129)
52 PTZ00382 Variant-specific surf 66.2 7.6 0.00016 32.4 3.5 27 86-113 69-95 (96)
53 PLN03150 hypothetical protein; 62.0 6.7 0.00015 41.7 3.1 20 85-104 542-561 (623)
54 PF12273 RCR: Chitin synthesis 61.9 6.8 0.00015 33.5 2.5 21 87-107 2-22 (130)
55 PF01034 Syndecan: Syndecan do 61.2 2.7 5.9E-05 33.3 -0.0 24 86-110 12-35 (64)
56 PF05283 MGC-24: Multi-glycosy 60.7 15 0.00033 34.4 4.7 23 92-114 163-185 (186)
57 PF05083 LST1: LST-1 protein; 60.6 3.7 8.1E-05 33.3 0.7 23 95-117 2-24 (74)
58 PF14851 FAM176: FAM176 family 59.8 4.5 9.8E-05 36.7 1.2 28 84-112 22-49 (153)
59 PTZ00046 rifin; Provisional 59.3 3.9 8.5E-05 41.7 0.7 30 87-116 315-344 (358)
60 PF13584 BatD: Oxygen toleranc 58.8 22 0.00048 36.1 6.0 19 30-48 344-364 (484)
61 TIGR01477 RIFIN variant surfac 56.7 4.6 9.9E-05 41.1 0.7 30 87-116 310-339 (353)
62 PF05510 Sarcoglycan_2: Sarcog 56.3 6.6 0.00014 40.4 1.8 38 92-130 290-327 (386)
63 PF15050 SCIMP: SCIMP protein 55.7 8.8 0.00019 34.2 2.2 18 99-116 20-37 (133)
64 KOG3514 Neurexin III-alpha [Si 55.5 23 0.00051 41.2 5.9 23 89-111 1514-1536(1591)
65 PLN00113 leucine-rich repeat r 55.3 11 0.00025 40.8 3.5 22 165-186 704-725 (968)
66 PF14986 DUF4514: Domain of un 54.1 12 0.00025 29.3 2.4 28 85-112 20-47 (61)
67 PF14979 TMEM52: Transmembrane 54.0 4.2 9E-05 37.1 -0.0 22 94-115 26-50 (154)
68 PF03229 Alpha_GJ: Alphavirus 53.5 17 0.00037 32.2 3.6 18 88-105 84-101 (126)
69 KOG4433 Tweety transmembrane/c 52.9 6 0.00013 42.0 0.9 30 86-115 43-74 (526)
70 KOG0729 26S proteasome regulat 52.0 5.4 0.00012 40.4 0.4 23 240-263 161-185 (435)
71 PF10670 DUF4198: Domain of un 51.9 23 0.0005 31.2 4.3 51 167-219 114-164 (215)
72 cd07912 Tweety_N N-terminal do 51.8 17 0.00036 37.8 3.8 17 99-115 54-70 (418)
73 PF01708 Gemini_mov: Geminivir 51.6 54 0.0012 27.8 6.1 9 84-92 34-42 (91)
74 TIGR03785 marine_sort_HK prote 48.7 21 0.00046 38.4 4.2 63 161-228 70-136 (703)
75 PTZ00208 65 kDa invariant surf 48.7 15 0.00033 38.3 3.0 35 85-119 385-419 (436)
76 KOG3637 Vitronectin receptor, 46.1 36 0.00078 39.1 5.6 15 21-35 919-933 (1030)
77 COG1566 EmrA Multidrug resista 44.4 29 0.00063 35.2 4.1 71 146-216 250-340 (352)
78 PF00974 Rhabdo_glycop: Rhabdo 42.1 8.4 0.00018 40.5 0.0 15 99-113 465-479 (501)
79 KOG3653 Transforming growth fa 41.0 35 0.00075 36.6 4.2 14 140-153 236-249 (534)
80 KOG0196 Tyrosine kinase, EPH ( 40.0 34 0.00073 38.9 4.1 33 145-177 610-655 (996)
81 PF00558 Vpu: Vpu protein; In 39.0 14 0.0003 30.6 0.8 20 89-108 6-25 (81)
82 PF15102 TMEM154: TMEM154 prot 38.1 25 0.00055 31.9 2.4 16 81-97 49-64 (146)
83 PF14914 LRRC37AB_C: LRRC37A/B 38.0 20 0.00044 32.8 1.8 31 87-117 120-151 (154)
84 KOG4482 Sarcoglycan complex, a 37.1 30 0.00065 36.1 3.0 29 95-124 305-333 (449)
85 PF01102 Glycophorin_A: Glycop 36.5 12 0.00027 32.7 0.2 41 78-119 58-99 (122)
86 PF13567 DUF4131: Domain of un 36.5 27 0.00057 28.6 2.1 17 173-189 79-95 (176)
87 PF05478 Prominin: Prominin; 36.3 32 0.0007 38.0 3.3 25 89-113 94-118 (806)
88 KOG4818 Lysosomal-associated m 35.5 34 0.00073 35.2 3.0 30 88-117 327-356 (362)
89 PHA03099 epidermal growth fact 35.2 29 0.00062 31.3 2.2 24 94-117 107-130 (139)
90 PF14991 MLANA: Protein melan- 35.1 12 0.00026 32.9 -0.1 9 145-153 73-81 (118)
91 COG5178 PRP8 U5 snRNP spliceos 34.4 33 0.00072 40.6 3.0 14 286-299 380-393 (2365)
92 PF07406 NICE-3: NICE-3 protei 33.5 53 0.0011 30.6 3.8 17 82-98 6-23 (186)
93 PF12768 Rax2: Cortical protei 33.4 58 0.0013 31.9 4.2 40 77-116 220-260 (281)
94 PF00558 Vpu: Vpu protein; In 32.4 39 0.00085 27.9 2.4 34 84-117 4-37 (81)
95 PF15048 OSTbeta: Organic solu 32.3 25 0.00054 31.2 1.4 40 85-125 35-74 (125)
96 KOG1187 Serine/threonine prote 31.9 20 0.00043 35.7 0.8 47 141-188 61-111 (361)
97 PHA03281 envelope glycoprotein 31.7 89 0.0019 34.2 5.5 44 81-124 552-597 (642)
98 PF08374 Protocadherin: Protoc 30.3 86 0.0019 30.4 4.6 25 86-110 37-61 (221)
99 PF11857 DUF3377: Domain of un 30.3 64 0.0014 26.4 3.3 30 85-114 27-56 (74)
100 KOG1094 Discoidin domain recep 30.2 21 0.00046 39.4 0.7 34 178-211 505-543 (807)
101 TIGR03154 sulfolob_CbsA cytoch 30.0 65 0.0014 33.5 4.0 9 29-37 398-406 (465)
102 PF00974 Rhabdo_glycop: Rhabdo 28.9 19 0.0004 38.0 0.0 18 99-116 462-479 (501)
103 PF05084 GRA6: Granule antigen 28.2 52 0.0011 31.0 2.7 9 116-124 175-183 (215)
104 TIGR02375 pseudoazurin pseudoa 27.5 97 0.0021 26.6 4.1 77 166-251 11-89 (116)
105 PF12877 DUF3827: Domain of un 27.0 37 0.0008 37.4 1.8 33 9-41 153-193 (684)
106 PF07215 DUF1419: Protein of u 26.9 56 0.0012 28.6 2.6 38 189-234 57-98 (111)
107 PTZ00045 apical membrane antig 26.2 47 0.001 36.2 2.4 29 83-112 511-539 (595)
108 COG2421 Predicted acetamidase/ 25.2 87 0.0019 31.6 3.9 27 203-229 156-182 (305)
109 PHA03273 envelope glycoprotein 25.2 67 0.0015 34.2 3.2 12 86-97 447-458 (486)
110 PF11669 WBP-1: WW domain-bind 25.1 24 0.00052 29.7 0.0 11 106-116 36-46 (102)
111 KOG3540 Beta amyloid precursor 25.1 33 0.00071 36.9 1.0 31 83-113 544-574 (615)
112 PRK14766 lipoprotein signal pe 24.3 36 0.00077 32.2 1.0 35 90-124 162-196 (201)
113 PF15176 LRR19-TM: Leucine-ric 23.2 69 0.0015 27.7 2.4 20 86-105 17-36 (102)
114 PF14991 MLANA: Protein melan- 23.0 17 0.00037 32.0 -1.3 9 109-117 46-54 (118)
115 PF07466 DUF1517: Protein of u 22.7 2.1E+02 0.0045 28.3 5.9 12 140-151 154-165 (289)
116 PHA03286 envelope glycoprotein 22.2 33 0.00072 36.4 0.4 27 90-116 394-421 (492)
117 PF14584 DUF4446: Protein of u 22.2 29 0.00062 31.3 -0.1 15 168-186 82-96 (151)
118 PF00957 Synaptobrevin: Synapt 22.2 80 0.0017 25.0 2.5 19 92-110 70-88 (89)
119 PRK08455 fliL flagellar basal 21.8 1.3E+02 0.0028 27.7 4.1 8 208-215 92-99 (182)
120 PF10577 UPF0560: Uncharacteri 21.6 41 0.00089 37.8 0.9 21 99-119 282-303 (807)
121 PF02124 Marek_A: Marek's dise 21.6 1.3E+02 0.0028 28.9 4.1 19 28-46 141-161 (211)
122 PF15298 AJAP1_PANP_C: AJAP1/P 21.3 1.9E+02 0.0041 27.8 5.1 33 87-119 101-133 (205)
123 PLN03160 uncharacterized prote 21.1 1.5E+02 0.0033 27.8 4.4 10 203-212 164-173 (219)
124 KOG4221 Receptor mediating net 20.6 1.3E+02 0.0028 35.8 4.5 27 86-113 1059-1085(1381)
125 PF01299 Lamp: Lysosome-associ 20.6 37 0.0008 32.9 0.3 29 86-115 273-301 (306)
126 PHA03292 envelope glycoprotein 20.5 1.7E+02 0.0036 30.8 4.9 19 86-104 317-335 (413)
127 PF06040 Adeno_E3: Adenovirus 20.3 50 0.0011 29.3 1.0 16 27-42 11-26 (127)
128 PHA03282 envelope glycoprotein 20.3 81 0.0018 33.9 2.7 13 104-116 426-438 (540)
129 PF07423 DUF1510: Protein of u 20.2 31 0.00067 32.9 -0.3 29 80-110 8-36 (217)
No 1
>PF09459 EB_dh: Ethylbenzene dehydrogenase; InterPro: IPR019020 This entry represents a haem-binding domain found in cytochromes b558/566 (subunit A), c-551 and c-552, as well as in members of the type-II members of the microbial dimethyl sulphoxide (DMSO) reductase family. The DMSO reductase family is a large and rapidly expanding group of enzymes found in bacteria and archaea that share a common form of molybdenum cofactor known as bis(molybdopterin guanine dinucleotide)Mo []. In addition to the molybdopterin subunit, these enzymes also contain an iron-sulphur subunit. These include two distinct but very closely related periplasmic proteins of anaerobic respiration: selenate reductase and chlorate reductase []. Other proteins containing this subunit include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase [, , ]. One member of the DMSO reductase family is eythylbenzene dehydrogenase, which is a heterotrimer of three subunits that catalyses the anaerobic degradation of hydrocarbons (alpha, beta and gamma subunits). This entry matches the gamma subunit, whose structure is known []. The alpha subunit contains the catalytic centre as a Molybdenum cofactor-complex. This removes an electron-pair from the hydrocarbon and passes it along an electron transport system involving iron-sulphur complexes held in the beta subunit and a Haem b molecule contained in the gamma subunit. The electron-pair is then subsequently passed to an as yet unknown receiver. The enzyme is found in a variety of different bacteria.; GO: 0020037 heme binding; PDB: 2IVF_C.
Probab=99.62 E-value=1.2e-16 Score=150.12 Aligned_cols=128 Identities=32% Similarity=0.580 Sum_probs=60.6
Q ss_pred ccccccccCccccccccCCCC--CCCCCCCCeeEEEEeecCccEEEEEEecC---cee------eec--CCcccCCceee
Q 019150 178 ADDWEDIDGSEFSLLPALDPH--AEHEYKGGKMNVKALHDGHDVYFLLQVDG---EYV------YSK--GENTRCPSIAL 244 (345)
Q Consensus 178 ~~dwk~V~G~~~~~~~al~~~--~~~~y~~g~~~vk~~~d~~~~~f~~~v~g---~y~------~~~--~~~~~c~~~~~ 244 (345)
+.+|++|+..+++|.|.+++. +..++....|+|||+|||++||||||.+. ++. |.+ ....-|..+|+
T Consensus 1 ~~~W~~~p~~~v~L~pg~~~~p~~~~~~~~~~v~VkAa~dg~~Iyfll~W~d~t~~~~~~p~~~~~~~~~~~~yeDk~Av 80 (261)
T PF09459_consen 1 DPDWSKAPPVEVPLYPGQSSYPEPPPKGGTIPVEVKAAHDGENIYFLLEWPDPTRSYERHPDGGWVQAGEDDYYEDKVAV 80 (261)
T ss_dssp -HHHHTS-EEEEE-EE--GGG----T-----EEEEEEEE-SSEEEEEEEEE-----S------------STT----EEEE
T ss_pred CchhccCCCeEEEECCCccCCccccCCCCcEEEEEEEEECCCeEEEEEEecCCCCCccccccccccccCCCCcCcceEEE
Confidence 368999999999999996543 44588889999999999999999999988 233 223 56778899999
Q ss_pred eeeecCCceeeecCCCCCCCCcccccccCCceeeEEEEEeccccCccccCCCCCCCCCCCCCCccccceeeeecCC----
Q 019150 245 MFQIGEDATYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVDVYAWTP---- 320 (345)
Q Consensus 245 m~~~g~~a~~~~mggc~~~~~~c~~~~c~~~~vdi~h~~~~~~~~g~~yg~n~~d~~~g~g~d~~~~~~d~y~~~p---- 320 (345)
||.+| ++.++.+.|| ..+|...+.|+.|+.+++ ||.|-+.. |+++|++.|++
T Consensus 81 mf~~g-~v~~~~~~Gc--------~~~ch~~~~~~p~~~~~~---~~ky~~~~------------g~~vdlW~Wka~r~~ 136 (261)
T PF09459_consen 81 MFSDG-DVPYFGQDGC--------WHTCHKPLRDMPAAPIGR---GRKYMGDS------------GEPVDLWHWKASRSG 136 (261)
T ss_dssp EE----------------------------ESST--T--GG-------GT-BT------------TB-EEEEEEET----
T ss_pred Eeeec-cccccccccc--------cccccCCcccccCCCccc---ceeeeCCC------------CeEEEEEEecccccc
Confidence 99999 8888866554 678999999999998887 88898874 99999999999
Q ss_pred ---------cccccCCCC
Q 019150 321 ---------HCRYLDGMG 329 (345)
Q Consensus 321 ---------~cr~~d~~~ 329 (345)
+|||.+|.|
T Consensus 137 ~~~d~~~~~~r~~~~G~g 154 (261)
T PF09459_consen 137 MADDGYVFGKRRYDAGYG 154 (261)
T ss_dssp ------------------
T ss_pred cccccccccccccccccc
Confidence 899999998
No 2
>TIGR03477 DMSO_red_II_gam DMSO reductase family type II enzyme, heme b subunit. This model represents a heme b-binding subunit, typically called the gamma subunit, of various proteins that also contain a molybdopterin subunit and an iron-sulfur protein. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=98.25 E-value=3.8e-06 Score=78.14 Aligned_cols=103 Identities=20% Similarity=0.313 Sum_probs=76.8
Q ss_pred ceeecCCcccccccccCccccccccCCCCCCCCCCCC--eeEEEEeecCccEEEEEEecCceeeecCC--cccCCceeee
Q 019150 170 GLITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGG--KMNVKALHDGHDVYFLLQVDGEYVYSKGE--NTRCPSIALM 245 (345)
Q Consensus 170 G~ItlDG~~~dwk~V~G~~~~~~~al~~~~~~~y~~g--~~~vk~~~d~~~~~f~~~v~g~y~~~~~~--~~~c~~~~~m 245 (345)
|.|.+|-.+..|++++..+..|.|+---.+...|++- +|.|||+||++.|||+|+=+-+=+=.... +.-=-.||++
T Consensus 9 g~~~~dp~d~vW~~ap~~~V~l~~q~~~~pn~~~~~~~~~v~VkA~~n~~~Iyf~l~W~D~T~d~~~~~~d~F~DgvAvq 88 (205)
T TIGR03477 9 GDLPLDPDAPVWAGAPATEVPMVSAPLVHPFLADTGVIKTLDVQAARNGERLAVRLKWADETHDVNTDGTDSFVDGVAVQ 88 (205)
T ss_pred CCCCCCcchhHHhcCCcEEEEeccccccccCccCCCcceEEEEEEEECCCeEEEEEEECCCCCccccccccccCcceEEE
Confidence 6888888899999999999999776553223334333 79999999999999999876543211111 1222469999
Q ss_pred eeecCCc-eeeecCCCCCCCCcccccccCCceeeEEEEEec
Q 019150 246 FQIGEDA-TYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIG 285 (345)
Q Consensus 246 ~~~g~~a-~~~~mggc~~~~~~c~~~~c~~~~vdi~h~~~~ 285 (345)
|++..+. .|.-||+ .+|.|.|-||.-.
T Consensus 89 FP~~~~~~p~i~MG~-------------~~~pVniw~W~a~ 116 (205)
T TIGR03477 89 FPVSRGSLPYITMGA-------------ADNPVNIWYWKAD 116 (205)
T ss_pred cccCCCccCceecCC-------------CCCceEEEEECCC
Confidence 9999877 7888886 5789999999764
No 3
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=97.35 E-value=0.00017 Score=64.82 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=17.1
Q ss_pred cceEEeehhHHHHHHHHHHHHHhhheeccccCC
Q 019150 85 NLILLFGIGTGLLITAIISVLIICSCAFRRRNS 117 (345)
Q Consensus 85 S~iaIIGIavG~~vllLL~vlilcLC~~rRkkk 117 (345)
++..|||++||.++.+||++++|++++|+|+||
T Consensus 47 nknIVIGvVVGVGg~ill~il~lvf~~c~r~kk 79 (154)
T PF04478_consen 47 NKNIVIGVVVGVGGPILLGILALVFIFCIRRKK 79 (154)
T ss_pred CccEEEEEEecccHHHHHHHHHhheeEEEeccc
Confidence 456778888886653333333333333333333
No 4
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=96.93 E-value=0.00034 Score=60.74 Aligned_cols=41 Identities=24% Similarity=0.268 Sum_probs=26.3
Q ss_pred CCCCCCccceEEeehhHHHHHHHHHHHHHhhheeccccCCC
Q 019150 78 SNKGKHSNLILLFGIGTGLLITAIISVLIICSCAFRRRNSK 118 (345)
Q Consensus 78 Sskkk~lS~iaIIGIavG~~vllLL~vlilcLC~~rRkkkK 118 (345)
+.-..+++..+|+||++|.++.+++++++|.||.+||+||.
T Consensus 55 ~ql~h~fs~~~i~~Ii~gv~aGvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 55 SQLVHRFSEPAIIGIIFGVMAGVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp -SSSSSSS-TCHHHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred cccccCccccceeehhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34466888999999999988855555556666666555554
No 5
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=96.73 E-value=0.0011 Score=55.07 Aligned_cols=35 Identities=11% Similarity=0.021 Sum_probs=23.0
Q ss_pred CCCCCCccceEEeehhHHHHHHHHHHHHHhhheec
Q 019150 78 SNKGKHSNLILLFGIGTGLLITAIISVLIICSCAF 112 (345)
Q Consensus 78 Sskkk~lS~iaIIGIavG~~vllLL~vlilcLC~~ 112 (345)
+.++..++..+|+||++|+++++.+++.+|++++.
T Consensus 57 st~~~~ls~gaiagi~vg~~~~v~~lv~~l~w~f~ 91 (96)
T PTZ00382 57 GANRSGLSTGAIAGISVAVVAVVGGLVGFLCWWFV 91 (96)
T ss_pred ccCCCCcccccEEEEEeehhhHHHHHHHHHhheeE
Confidence 34556788999999999988654444434443333
No 6
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=95.55 E-value=0.015 Score=41.96 Aligned_cols=28 Identities=11% Similarity=0.068 Sum_probs=14.4
Q ss_pred cceEE-eehhHHHHHHHHHHHHHhhheec
Q 019150 85 NLILL-FGIGTGLLITAIISVLIICSCAF 112 (345)
Q Consensus 85 S~iaI-IGIavG~~vllLL~vlilcLC~~ 112 (345)
+..+| +|+++..++++++++++|++.++
T Consensus 9 ~~vaIa~~VvVPV~vI~~vl~~~l~~~~r 37 (40)
T PF08693_consen 9 NTVAIAVGVVVPVGVIIIVLGAFLFFWYR 37 (40)
T ss_pred ceEEEEEEEEechHHHHHHHHHHhheEEe
Confidence 33444 55666666555555544444443
No 7
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=94.34 E-value=0.015 Score=59.68 Aligned_cols=26 Identities=19% Similarity=0.415 Sum_probs=0.0
Q ss_pred EEeehhHHHHHHHHHHHH--Hhhheecc
Q 019150 88 LLFGIGTGLLITAIISVL--IICSCAFR 113 (345)
Q Consensus 88 aIIGIavG~~vllLL~vl--ilcLC~~r 113 (345)
+++++++|.+++++|+++ |+|+|++|
T Consensus 353 ~~l~vVlgvavlivVv~viv~vc~~~rr 380 (439)
T PF02480_consen 353 ALLGVVLGVAVLIVVVGVIVWVCLRCRR 380 (439)
T ss_dssp ----------------------------
T ss_pred chHHHHHHHHHHHHHHHHHhheeeeehh
Confidence 333344444443333333 44444433
No 8
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=94.22 E-value=0.034 Score=56.08 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=27.7
Q ss_pred CCCCCCccceEEeehhHHHHHHHHHHHHHhhheeccccC
Q 019150 78 SNKGKHSNLILLFGIGTGLLITAIISVLIICSCAFRRRN 116 (345)
Q Consensus 78 Sskkk~lS~iaIIGIavG~~vllLL~vlilcLC~~rRkk 116 (345)
+.+++.||..||+||+|+++|++--||-+||+|+..|+|
T Consensus 358 ~~n~s~LstgaIaGIsvavvvvVgglvGfLcWwf~crgk 396 (397)
T PF03302_consen 358 STNKSGLSTGAIAGISVAVVVVVGGLVGFLCWWFICRGK 396 (397)
T ss_pred CcccccccccceeeeeehhHHHHHHHHHHHhhheeeccc
Confidence 335578999999999999887665555566655554444
No 9
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=93.79 E-value=0.073 Score=47.52 Aligned_cols=28 Identities=18% Similarity=0.482 Sum_probs=15.1
Q ss_pred cceEEeehhHHHHHHHHHHHHHhhheec
Q 019150 85 NLILLFGIGTGLLITAIISVLIICSCAF 112 (345)
Q Consensus 85 S~iaIIGIavG~~vllLL~vlilcLC~~ 112 (345)
...+|+||++|++++++++++++|.|++
T Consensus 77 ~~~iivgvi~~Vi~Iv~~Iv~~~Cc~c~ 104 (179)
T PF13908_consen 77 ITGIIVGVICGVIAIVVLIVCFCCCCCC 104 (179)
T ss_pred eeeeeeehhhHHHHHHHhHhhheecccc
Confidence 4556677777766554444444443343
No 10
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=93.63 E-value=0.034 Score=47.51 Aligned_cols=20 Identities=35% Similarity=0.614 Sum_probs=9.4
Q ss_pred HHHHHHHHhhheeccccCCC
Q 019150 99 TAIISVLIICSCAFRRRNSK 118 (345)
Q Consensus 99 llLL~vlilcLC~~rRkkkK 118 (345)
++||+++++++|..|||+||
T Consensus 10 ~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 10 VAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 34444444555554444444
No 11
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=93.48 E-value=0.085 Score=51.70 Aligned_cols=36 Identities=19% Similarity=0.458 Sum_probs=21.2
Q ss_pred CCCccce-EEeehhHHHHHHHHHHHHHhhheeccccC
Q 019150 81 GKHSNLI-LLFGIGTGLLITAIISVLIICSCAFRRRN 116 (345)
Q Consensus 81 kk~lS~i-aIIGIavG~~vllLL~vlilcLC~~rRkk 116 (345)
+++.+.+ +|+|.++|.++|.||.++++++.+.+|+|
T Consensus 207 ~~~~~~W~iv~g~~~G~~~L~ll~~lv~~~vr~krk~ 243 (278)
T PF06697_consen 207 RKRSWWWKIVVGVVGGVVLLGLLSLLVAMLVRYKRKK 243 (278)
T ss_pred CCcceeEEEEEEehHHHHHHHHHHHHHHhhhhhhHHH
Confidence 3333333 46677777777777766666666554433
No 12
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=93.41 E-value=0.022 Score=55.85 Aligned_cols=25 Identities=8% Similarity=0.125 Sum_probs=0.0
Q ss_pred cccccccceEEEEEEecCCCCCCCCCCC
Q 019150 30 FDSTLVGDYKLLNFTWFEPPAPSQAPLA 57 (345)
Q Consensus 30 ~n~~lfGdY~vinvt~f~P~~pSpcP~~ 57 (345)
|...+-=+|+|.+|++. +-..|-..
T Consensus 87 f~~am~pef~V~svsv~---~~G~C~~~ 111 (290)
T PF05454_consen 87 FVRAMGPEFKVKSVSVI---PIGSCQDT 111 (290)
T ss_dssp ----------------------------
T ss_pred HHHHhCCCCceeEEEEE---EeeccCCC
Confidence 44556778999999995 44778764
No 13
>PF15102 TMEM154: TMEM154 protein family
Probab=93.14 E-value=0.27 Score=44.29 Aligned_cols=12 Identities=25% Similarity=0.293 Sum_probs=5.8
Q ss_pred CccceEEeehhH
Q 019150 83 HSNLILLFGIGT 94 (345)
Q Consensus 83 ~lS~iaIIGIav 94 (345)
....+++|+|-.
T Consensus 54 q~efiLmIlIP~ 65 (146)
T PF15102_consen 54 QLEFILMILIPL 65 (146)
T ss_pred CcceEEEEeHHH
Confidence 334455555543
No 14
>PF06452 DUF1083: Domain of unknown function (DUF1083); InterPro: IPR010502 This entry represents the family 9 carbohydrate-binding module (CBD9), which exhibit an immunoglobulin-like beta-sandwich fold, with an additional beta-strand at the N terminus []. Bacterial extracellular cellulases and hemicellulases are involved in the hydrolysis of the major structural polysaccharides of plant cell walls. These are usually modular enzymes that contain catalytic and non-catalytic domains. The CBD9 domain binds to cellulose, xylan, as well as to a range of soluble di- and mono-saccharides, and is found in cellulose- and xylan-degrading enzymes, such as endo-1,4-beta-xylanase (3.2.1.8 from EC) [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0016052 carbohydrate catabolic process; PDB: 1I82_A 1I8A_A 1I8U_A.
Probab=91.58 E-value=0.24 Score=42.72 Aligned_cols=54 Identities=17% Similarity=0.356 Sum_probs=34.8
Q ss_pred cCCcc-cccccccCccccccccCCCCCCCCCCCCeeEEEEeecCccEEEEEEecCcee
Q 019150 174 LDGHA-DDWEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYV 230 (345)
Q Consensus 174 lDG~~-~dwk~V~G~~~~~~~al~~~~~~~y~~g~~~vk~~~d~~~~~f~~~v~g~y~ 230 (345)
+||.. ++|++.+ .+.+.....+..... +.=+.+||+++|.+.+||+++|--+.-
T Consensus 1 IDG~~d~~W~~a~--~~~~~~~~~~~~~~~-~~~s~~~~~~wD~~~LY~~~~v~D~~~ 55 (185)
T PF06452_consen 1 IDGKLDAEWKGAP--PITIFYQWWGSDWSG-EDLSTRVRLLWDDENLYFAFEVTDDTL 55 (185)
T ss_dssp SSSS--GGGGGS---EEE--EEEES-T--T-TS-EEEEEEEE-SSEEEEEEEEE-SS-
T ss_pred CCCcccchhcCCc--eEeeeeeecccccCC-CCccEEEEEEEeCCeEEEEEEEECCcc
Confidence 48998 3599998 555666666554444 667899999999999999999987773
No 15
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=91.37 E-value=0.3 Score=44.38 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=30.5
Q ss_pred CCCCCCCCccceEEeehhHHHHHHHHHHHHHhhheeccccCC
Q 019150 76 STSNKGKHSNLILLFGIGTGLLITAIISVLIICSCAFRRRNS 117 (345)
Q Consensus 76 ssSskkk~lS~iaIIGIavG~~vllLL~vlilcLC~~rRkkk 117 (345)
.-|++.|..-..++|||.+..+ +++++++++|.+++||++=
T Consensus 42 GlS~knknIVIGvVVGVGg~il-l~il~lvf~~c~r~kktdf 82 (154)
T PF04478_consen 42 GLSSKNKNIVIGVVVGVGGPIL-LGILALVFIFCIRRKKTDF 82 (154)
T ss_pred CCCcCCccEEEEEEecccHHHH-HHHHHhheeEEEecccCcc
Confidence 3556777888999999877655 5566666888888888883
No 16
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=91.00 E-value=0.15 Score=49.22 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=19.3
Q ss_pred EEeehhHHHHHHHHHHHHHhhheeccccCC
Q 019150 88 LLFGIGTGLLITAIISVLIICSCAFRRRNS 117 (345)
Q Consensus 88 aIIGIavG~~vllLL~vlilcLC~~rRkkk 117 (345)
-+|-|+||++++.||+++++.++..|||++
T Consensus 271 ~~vPIaVG~~La~lvlivLiaYli~Rrr~~ 300 (306)
T PF01299_consen 271 DLVPIAVGAALAGLVLIVLIAYLIGRRRSR 300 (306)
T ss_pred chHHHHHHHHHHHHHHHHHHhheeEecccc
Confidence 467799998886555555555555544444
No 17
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=90.66 E-value=0.17 Score=45.83 Aligned_cols=36 Identities=19% Similarity=0.446 Sum_probs=25.2
Q ss_pred CCCccceEEeehhHHHHH-HHHHHHHHhhheeccccC
Q 019150 81 GKHSNLILLFGIGTGLLI-TAIISVLIICSCAFRRRN 116 (345)
Q Consensus 81 kk~lS~iaIIGIavG~~v-llLL~vlilcLC~~rRkk 116 (345)
..-++..||.||+.|+++ +.++..+.+|+|.+-++.
T Consensus 55 ~~~lsgtAIaGIVfgiVfimgvva~i~icvCmc~kn~ 91 (155)
T PF10873_consen 55 GDVLSGTAIAGIVFGIVFIMGVVAGIAICVCMCMKNS 91 (155)
T ss_pred ccccccceeeeeehhhHHHHHHHHHHHHHHhhhhhcC
Confidence 445778999999999988 444455566666665444
No 18
>PF15069 FAM163: FAM163 family
Probab=90.61 E-value=0.3 Score=43.90 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=12.6
Q ss_pred ceEEeehhHHHHHHHHHHHHHhhhee
Q 019150 86 LILLFGIGTGLLITAIISVLIICSCA 111 (345)
Q Consensus 86 ~iaIIGIavG~~vllLL~vlilcLC~ 111 (345)
+++|.|.++..++||+ ++++||+|+
T Consensus 5 TvVItGgILAtVILLc-IIaVLCYCR 29 (143)
T PF15069_consen 5 TVVITGGILATVILLC-IIAVLCYCR 29 (143)
T ss_pred eEEEechHHHHHHHHH-HHHHHHHHh
Confidence 4555555444443333 333677666
No 19
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=90.43 E-value=0.25 Score=40.47 Aligned_cols=40 Identities=25% Similarity=0.276 Sum_probs=30.2
Q ss_pred CCCCCccceEEeehhHHHHHHHHHHHHHhhheeccccCCC
Q 019150 79 NKGKHSNLILLFGIGTGLLITAIISVLIICSCAFRRRNSK 118 (345)
Q Consensus 79 skkk~lS~iaIIGIavG~~vllLL~vlilcLC~~rRkkkK 118 (345)
+.=-.++..+++||+.|-+++-+|+++..+.|.+.|+|++
T Consensus 26 s~C~~ls~g~LaGiV~~D~vlTLLIv~~vy~car~r~r~~ 65 (79)
T PF07213_consen 26 SGCYPLSPGLLAGIVAADAVLTLLIVLVVYYCARPRRRPT 65 (79)
T ss_pred CCccccCHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCc
Confidence 3445567889999999999988888878888876555443
No 20
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=90.35 E-value=0.082 Score=54.35 Aligned_cols=36 Identities=19% Similarity=0.347 Sum_probs=0.0
Q ss_pred CCCccceEEeehhHHHHH-HHHHHHHHhhheeccccC
Q 019150 81 GKHSNLILLFGIGTGLLI-TAIISVLIICSCAFRRRN 116 (345)
Q Consensus 81 kk~lS~iaIIGIavG~~v-llLL~vlilcLC~~rRkk 116 (345)
+...-+.+|+|++++.++ ++++++++.|-+++++++
T Consensus 350 ~~~~~l~vVlgvavlivVv~viv~vc~~~rrrR~~~~ 386 (439)
T PF02480_consen 350 RGAALLGVVLGVAVLIVVVGVIVWVCLRCRRRRRQRD 386 (439)
T ss_dssp -------------------------------------
T ss_pred cccchHHHHHHHHHHHHHHHHHhheeeeehhcccccc
Confidence 334456666677777665 888888999999998777
No 21
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=90.31 E-value=0.3 Score=47.57 Aligned_cols=20 Identities=15% Similarity=0.164 Sum_probs=11.7
Q ss_pred CCCCCccceEEeehhHHHHH
Q 019150 79 NKGKHSNLILLFGIGTGLLI 98 (345)
Q Consensus 79 skkk~lS~iaIIGIavG~~v 98 (345)
+++||+++..||.|..++++
T Consensus 219 ~~~~~l~~G~VVlIslAiAL 238 (281)
T PF12768_consen 219 KGGKKLSRGFVVLISLAIAL 238 (281)
T ss_pred cccccccceEEEEEehHHHH
Confidence 34577777776655554443
No 22
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=90.29 E-value=0.15 Score=40.60 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=12.5
Q ss_pred EeehhHHHHHHHHHHHHHhhheeccccCC
Q 019150 89 LFGIGTGLLITAIISVLIICSCAFRRRNS 117 (345)
Q Consensus 89 IIGIavG~~vllLL~vlilcLC~~rRkkk 117 (345)
|++++++++++++++++++++|.+|+++.
T Consensus 2 ii~~~~~g~~~ll~~v~~~~~~~rr~~~~ 30 (75)
T PF14575_consen 2 IIASIIVGVLLLLVLVIIVIVCFRRCKYS 30 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCTT----
T ss_pred EEehHHHHHHHHHHhheeEEEEEeeEcCC
Confidence 34444555544444444555555544433
No 23
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=90.20 E-value=0.22 Score=47.48 Aligned_cols=44 Identities=14% Similarity=0.173 Sum_probs=30.2
Q ss_pred cceEeeeeecceeecCCcccccccccCccccccccCCCCCCCCC
Q 019150 160 EIRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEY 203 (345)
Q Consensus 160 E~RI~aef~PG~ItlDG~~~dwk~V~G~~~~~~~al~~~~~~~y 203 (345)
..|.....+-+.+|++..-.||.+.++.+..|--.+..|.-..|
T Consensus 99 K~kspk~l~ln~vtie~~k~d~~~~~~~~~~~~L~~~~~~~~~~ 142 (221)
T PF08374_consen 99 KKKSPKPLLLNFVTIEESKPDDADNDQKSVTFDLELEEDSMGKY 142 (221)
T ss_pred cccCCccccccccccccCCcCccccccccceeccccCCCCcccc
Confidence 35666677888899999999999888877655434443333333
No 24
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=90.09 E-value=0.089 Score=48.05 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=0.0
Q ss_pred CCCCccceEEeehhHHHHH-HHHHHHHHhhheec
Q 019150 80 KGKHSNLILLFGIGTGLLI-TAIISVLIICSCAF 112 (345)
Q Consensus 80 kkk~lS~iaIIGIavG~~v-llLL~vlilcLC~~ 112 (345)
.|..++..+++||++|.++ +.+|.-|+|++.||
T Consensus 122 ek~GL~T~tLVGIIVGVLlaIG~igGIIivvvRK 155 (162)
T PF05808_consen 122 EKDGLSTVTLVGIIVGVLLAIGFIGGIIIVVVRK 155 (162)
T ss_dssp ----------------------------------
T ss_pred ccCCcceeeeeeehhhHHHHHHHHhheeeEEeeh
Confidence 3778899999999999998 66666656655554
No 25
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=89.15 E-value=0.16 Score=43.00 Aligned_cols=22 Identities=14% Similarity=0.366 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhhheeccccC
Q 019150 95 GLLITAIISVLIICSCAFRRRN 116 (345)
Q Consensus 95 G~~vllLL~vlilcLC~~rRkk 116 (345)
|++++++|++|.+++||+.|.|
T Consensus 48 GGG~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 48 GGGLILILIIIALVCCCRAKHK 69 (98)
T ss_pred cchhhhHHHHHHHHHHhhhhhh
Confidence 3444444444555555544433
No 26
>PF15345 TMEM51: Transmembrane protein 51
Probab=88.78 E-value=0.44 Score=45.79 Aligned_cols=35 Identities=14% Similarity=0.156 Sum_probs=17.0
Q ss_pred CCCCCccceEEeehhHHHHHHHHHHHHHhhheeccccCC
Q 019150 79 NKGKHSNLILLFGIGTGLLITAIISVLIICSCAFRRRNS 117 (345)
Q Consensus 79 skkk~lS~iaIIGIavG~~vllLL~vlilcLC~~rRkkk 117 (345)
+.+++.+.+|.|= ||+++++||+ -|||+.|.|||+
T Consensus 52 ~~ksKt~SVAyVL--VG~Gv~LLLL--SICL~IR~KRr~ 86 (233)
T PF15345_consen 52 NLKSKTFSVAYVL--VGSGVALLLL--SICLSIRDKRRR 86 (233)
T ss_pred cccceeEEEEEeh--hhHHHHHHHH--HHHHHHHHHHHH
Confidence 4555555555553 3444333333 356666544443
No 27
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=88.17 E-value=0.29 Score=35.20 Aligned_cols=9 Identities=11% Similarity=0.305 Sum_probs=4.0
Q ss_pred eehhHHHHH
Q 019150 90 FGIGTGLLI 98 (345)
Q Consensus 90 IGIavG~~v 98 (345)
|||++|.++
T Consensus 6 IaIIv~V~v 14 (38)
T PF02439_consen 6 IAIIVAVVV 14 (38)
T ss_pred hhHHHHHHH
Confidence 344444444
No 28
>cd00005 CBM9 Family 9 carbohydrate-binding module (CBM), plays a role in microbial degradation of cellulose and hemicellulose found in plants; previously called cellulose-binding domain; the binding sites of the CBMs for which structures have been determined are of two general types: flat surfaces comprising predominantly aromatic residues tryptophan and tyrosine and extended shallow grooves; this domain frequently occurs in tandem.
Probab=87.89 E-value=0.77 Score=41.42 Aligned_cols=53 Identities=28% Similarity=0.488 Sum_probs=37.6
Q ss_pred eecceeecCCcccc-cccccCccccccccCCCCCCCCCCCCeeEEEEeecCccEEEEEEec
Q 019150 167 FKPGLITLDGHADD-WEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVD 226 (345)
Q Consensus 167 f~PG~ItlDG~~~d-wk~V~G~~~~~~~al~~~~~~~y~~g~~~vk~~~d~~~~~f~~~v~ 226 (345)
-..+.+++||..++ |+..+-..- +-...|. ++=+-+||+++|...+|++.+|-
T Consensus 5 ~~~~~p~IDG~~de~W~~a~~~~~--~~~~~~~-----~~~~t~~k~lwDd~~LYv~~~v~ 58 (186)
T cd00005 5 AKYGTPVIDGQVDDIWKKAKPLET--NTYVEGT-----SGATATVRVLWDEKNLYVLAEVK 58 (186)
T ss_pred eccCCCeecCccchhHhhCcceee--eeEecCC-----CCcceEEEEEEcCCcEEEEEEEE
Confidence 34567788999777 998765432 1122332 33568999999999999999964
No 29
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=87.47 E-value=0.18 Score=39.90 Aligned_cols=9 Identities=11% Similarity=0.169 Sum_probs=0.0
Q ss_pred eehhHHHHH
Q 019150 90 FGIGTGLLI 98 (345)
Q Consensus 90 IGIavG~~v 98 (345)
+|+++|+++
T Consensus 12 aavIaG~Vv 20 (64)
T PF01034_consen 12 AAVIAGGVV 20 (64)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 444444444
No 30
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=86.74 E-value=0.4 Score=40.27 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=21.1
Q ss_pred CccceEEeehhHHHHHHHHHHHHHhhheeccccCCCCCCCCCC
Q 019150 83 HSNLILLFGIGTGLLITAIISVLIICSCAFRRRNSKASPKETA 125 (345)
Q Consensus 83 ~lS~iaIIGIavG~~vllLL~vlilcLC~~rRkkkK~ppvet~ 125 (345)
..+.+.-+|+-.+.+++++|+++++.+.||++|||..+|+=.+
T Consensus 26 ~~n~~~~Lgm~~lvI~~iFil~VilwfvCC~kRkrsRrPIYrP 68 (94)
T PF05393_consen 26 FVNNWPNLGMWFLVICGIFILLVILWFVCCKKRKRSRRPIYRP 68 (94)
T ss_pred ecCCCCccchhHHHHHHHHHHHHHHHHHHHHHhhhccCCcccc
Confidence 3455666677666666554444333333333334444555443
No 31
>COG3889 Predicted solute binding protein [General function prediction only]
Probab=86.51 E-value=1 Score=49.87 Aligned_cols=27 Identities=11% Similarity=-0.112 Sum_probs=11.5
Q ss_pred eEEeehhHHHHHHHHHHHHHhhheecc
Q 019150 87 ILLFGIGTGLLITAIISVLIICSCAFR 113 (345)
Q Consensus 87 iaIIGIavG~~vllLL~vlilcLC~~r 113 (345)
..+.|.+.|.++++++++.+-++++||
T Consensus 844 ttt~~~i~g~i~iiv~LaAla~lLrRR 870 (872)
T COG3889 844 TTTGGGICGPIVIIVGLAALALLLRRR 870 (872)
T ss_pred cccccccchHHHHHHHHHHHHHHHHhh
Confidence 334444555554333333333344433
No 32
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=83.09 E-value=0.39 Score=47.42 Aligned_cols=31 Identities=23% Similarity=0.352 Sum_probs=19.6
Q ss_pred ceEEeehhHHHHHHHHHHHHHhhheeccccC
Q 019150 86 LILLFGIGTGLLITAIISVLIICSCAFRRRN 116 (345)
Q Consensus 86 ~iaIIGIavG~~vllLL~vlilcLC~~rRkk 116 (345)
..+|++.++.+++++||+||+.+.++-||||
T Consensus 255 ~t~I~aSiiaIliIVLIMvIIYLILRYRRKK 285 (299)
T PF02009_consen 255 TTAIIASIIAILIIVLIMVIIYLILRYRRKK 285 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556777777777666666666666655544
No 33
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=82.53 E-value=1.4 Score=39.35 Aligned_cols=34 Identities=29% Similarity=0.466 Sum_probs=25.4
Q ss_pred cceEEeehhHHHHH-HHHHHHHHhhheeccccCCC
Q 019150 85 NLILLFGIGTGLLI-TAIISVLIICSCAFRRRNSK 118 (345)
Q Consensus 85 S~iaIIGIavG~~v-llLL~vlilcLC~~rRkkkK 118 (345)
...++++|++|+++ +++|+++|+|+|+++--+.|
T Consensus 73 ~~~~~~~iivgvi~~Vi~Iv~~Iv~~~Cc~c~~~K 107 (179)
T PF13908_consen 73 PIYFITGIIVGVICGVIAIVVLIVCFCCCCCCLYK 107 (179)
T ss_pred cccceeeeeeehhhHHHHHHHhHhhheeccccccc
Confidence 36779999999888 66666667778887766555
No 34
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=81.83 E-value=0.44 Score=46.95 Aligned_cols=15 Identities=33% Similarity=0.724 Sum_probs=0.0
Q ss_pred HHHHHHHhhheeccc
Q 019150 100 AIISVLIICSCAFRR 114 (345)
Q Consensus 100 lLL~vlilcLC~~rR 114 (345)
+||+.+++|+|.+||
T Consensus 159 LLIA~iIa~icyrrk 173 (290)
T PF05454_consen 159 LLIAGIIACICYRRK 173 (290)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHhhhhh
Confidence 334444555555433
No 35
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=81.51 E-value=2 Score=46.73 Aligned_cols=36 Identities=19% Similarity=0.382 Sum_probs=21.7
Q ss_pred CCCCccceEEeehhHHHHHHHHHHHHHhhheeccccC
Q 019150 80 KGKHSNLILLFGIGTGLLITAIISVLIICSCAFRRRN 116 (345)
Q Consensus 80 kkk~lS~iaIIGIavG~~vllLL~vlilcLC~~rRkk 116 (345)
+....+++.|||+++-.+++ +|+++|+++|+||++|
T Consensus 263 ~s~~~NlWII~gVlvPv~vV-~~Iiiil~~~LCRk~K 298 (684)
T PF12877_consen 263 KSPPNNLWIIAGVLVPVLVV-LLIIIILYWKLCRKNK 298 (684)
T ss_pred CCCCCCeEEEehHhHHHHHH-HHHHHHHHHHHhcccc
Confidence 44455788889886665544 4444455555555555
No 36
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=80.84 E-value=0.51 Score=34.21 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=28.3
Q ss_pred ccceEEeehhHHHHH-HHHHHHHHhhheeccccCCC
Q 019150 84 SNLILLFGIGTGLLI-TAIISVLIICSCAFRRRNSK 118 (345)
Q Consensus 84 lS~iaIIGIavG~~v-llLL~vlilcLC~~rRkkkK 118 (345)
.+.---++|++|.++ +.++++++++++.+.+||+|
T Consensus 5 ~~~~~~vaIa~~VvVPV~vI~~vl~~~l~~~~rR~k 40 (40)
T PF08693_consen 5 SSNSNTVAIAVGVVVPVGVIIIVLGAFLFFWYRRKK 40 (40)
T ss_pred cCCCceEEEEEEEEechHHHHHHHHHHhheEEeccC
Confidence 346777899999888 88888888888888887765
No 37
>PHA03265 envelope glycoprotein D; Provisional
Probab=80.83 E-value=1.5 Score=44.79 Aligned_cols=12 Identities=25% Similarity=0.443 Sum_probs=6.3
Q ss_pred CCCCCCCCCCCC
Q 019150 47 EPPAPSQAPLAS 58 (345)
Q Consensus 47 ~P~~pSpcP~~a 58 (345)
+|++|.--|+|.
T Consensus 277 ~P~~~~~~~~~~ 288 (402)
T PHA03265 277 RPVPPDNHPGFD 288 (402)
T ss_pred CCCCCCCCCCcc
Confidence 455555555543
No 38
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=79.10 E-value=2.6 Score=33.68 Aligned_cols=54 Identities=15% Similarity=-0.037 Sum_probs=34.9
Q ss_pred CCCccceEEeehhHHHHHHHHHHHHHhh--heeccccCCCCCCCCCCchhHHHHHH
Q 019150 81 GKHSNLILLFGIGTGLLITAIISVLIIC--SCAFRRRNSKASPKETAKPRLLLLLF 134 (345)
Q Consensus 81 kk~lS~iaIIGIavG~~vllLL~vlilc--LC~~rRkkkK~ppvet~k~Rtl~Lvs 134 (345)
.|.+|-.+||-|++|.+++++++-..++ +|.+.---+|..|+.-+++.-+.+-.
T Consensus 7 ~KGlnPGlIVLlvV~g~ll~flvGnyvlY~Yaqk~lpp~kkkpvskkk~k~e~lkq 62 (69)
T PF04689_consen 7 AKGLNPGLIVLLVVAGLLLVFLVGNYVLYVYAQKTLPPKKKKPVSKKKMKRERLKQ 62 (69)
T ss_pred ccCCCCCeEEeehHHHHHHHHHHHHHHHHHHHhhcCCCCCCCcccHHHHHHHHHhc
Confidence 3778888888888888876555554444 44433333666777777777666654
No 39
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=78.57 E-value=5.3 Score=36.54 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=6.0
Q ss_pred HHHHHHHHhhheeccc
Q 019150 99 TAIISVLIICSCAFRR 114 (345)
Q Consensus 99 llLL~vlilcLC~~rR 114 (345)
++++++ +|-.++.||
T Consensus 107 l~i~yf-vir~~R~r~ 121 (163)
T PF06679_consen 107 LAILYF-VIRTFRLRR 121 (163)
T ss_pred HHHHHH-HHHHHhhcc
Confidence 333333 333444443
No 40
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=77.20 E-value=1.7 Score=31.25 Aligned_cols=28 Identities=14% Similarity=0.104 Sum_probs=13.4
Q ss_pred cceEEeehhHHHHHHHHHHHHHhhheec
Q 019150 85 NLILLFGIGTGLLITAIISVLIICSCAF 112 (345)
Q Consensus 85 S~iaIIGIavG~~vllLL~vlilcLC~~ 112 (345)
++++||+-++-++++++++++....|.+
T Consensus 4 s~IaIIv~V~vg~~iiii~~~~YaCcyk 31 (38)
T PF02439_consen 4 STIAIIVAVVVGMAIIIICMFYYACCYK 31 (38)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566644444444455555533333443
No 41
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=76.97 E-value=0.89 Score=45.88 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=20.9
Q ss_pred CccceEEeehhHHHHH-HHHHHHHHhhheeccccCCC
Q 019150 83 HSNLILLFGIGTGLLI-TAIISVLIICSCAFRRRNSK 118 (345)
Q Consensus 83 ~lS~iaIIGIavG~~v-llLL~vlilcLC~~rRkkkK 118 (345)
++|..+|+-|++|-++ ++++++..+++|.+|++++|
T Consensus 314 ~~S~lvi~i~~vgLG~P~l~li~Ggl~v~~~r~r~~~ 350 (350)
T PF15065_consen 314 SFSPLVIMIMAVGLGVPLLLLILGGLYVCLRRRRKRK 350 (350)
T ss_pred chhHHHHHHHHHHhhHHHHHHHHhhheEEEeccccCC
Confidence 3455555546667666 55555556666766555554
No 42
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=76.79 E-value=1.5 Score=40.31 Aligned_cols=25 Identities=24% Similarity=0.549 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHhhheeccccC
Q 019150 92 IGTGLLITAIISVLIICSCAFRRRN 116 (345)
Q Consensus 92 IavG~~vllLL~vlilcLC~~rRkk 116 (345)
|.+|++++.+++++++.||.+||||
T Consensus 34 ILiaIvVliiiiivli~lcssRKkK 58 (189)
T PF05568_consen 34 ILIAIVVLIIIIIVLIYLCSSRKKK 58 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 5677777766777667777764433
No 43
>PHA03283 envelope glycoprotein E; Provisional
Probab=75.51 E-value=2.8 Score=44.58 Aligned_cols=38 Identities=21% Similarity=0.096 Sum_probs=16.8
Q ss_pred ceEEeehhHHHHHHHHHHHHHhhheeccccCCCCCCCCC
Q 019150 86 LILLFGIGTGLLITAIISVLIICSCAFRRRNSKASPKET 124 (345)
Q Consensus 86 ~iaIIGIavG~~vllLL~vlilcLC~~rRkkkK~ppvet 124 (345)
+..+++|..+++++++.+++|.|+.++ +.++|.=++-+
T Consensus 400 l~~~~~~~~~~~~~~~~l~vw~c~~~r-~~~~~~y~iln 437 (542)
T PHA03283 400 LAFLLAIICTCAALLVALVVWGCILYR-RSNRKPYEVLN 437 (542)
T ss_pred chhHHHHHHHHHHHHHHHhhhheeeeh-hhcCCcccccC
Confidence 333333333334344444445555544 44444434433
No 44
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=75.45 E-value=1.6 Score=44.50 Aligned_cols=20 Identities=25% Similarity=0.697 Sum_probs=12.1
Q ss_pred HHHHHHHHhhheeccccCCC
Q 019150 99 TAIISVLIICSCAFRRRNSK 118 (345)
Q Consensus 99 llLL~vlilcLC~~rRkkkK 118 (345)
+++|++.++|.||+||++++
T Consensus 34 Ll~ll~yl~~~CC~r~~~~~ 53 (406)
T PF04906_consen 34 LLFLLIYLICRCCCRRPREE 53 (406)
T ss_pred HHHHHHHHHHHhhCCCCCcc
Confidence 44555556777887655443
No 45
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=75.06 E-value=10 Score=38.49 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=13.1
Q ss_pred hhHHHHH-HHHHHHHHhhheeccccC
Q 019150 92 IGTGLLI-TAIISVLIICSCAFRRRN 116 (345)
Q Consensus 92 IavG~~v-llLL~vlilcLC~~rRkk 116 (345)
|++.+++ ++-+++..+|+|+.+|..
T Consensus 203 Iv~~cvaG~aAliva~~cW~Rlqr~~ 228 (341)
T PF06809_consen 203 IVVCCVAGAAALIVAGYCWYRLQREI 228 (341)
T ss_pred hHHHHHHHHHHHHHhhheEEEecccc
Confidence 4444444 344445566777665444
No 46
>PHA03281 envelope glycoprotein E; Provisional
Probab=72.96 E-value=6.2 Score=42.56 Aligned_cols=29 Identities=14% Similarity=0.218 Sum_probs=16.8
Q ss_pred CCccceEEeeh-hHHHHHHHHHHHHHhhhe
Q 019150 82 KHSNLILLFGI-GTGLLITAIISVLIICSC 110 (345)
Q Consensus 82 k~lS~iaIIGI-avG~~vllLL~vlilcLC 110 (345)
.+.+...+-++ ..|.++++|||++++.+|
T Consensus 548 ~~~~p~~~y~~l~~~~a~~~ll~l~~~~~c 577 (642)
T PHA03281 548 PGTFPFKRYAAITGGFAALALLCLAIALIC 577 (642)
T ss_pred cCCCCeEeehhhhhhhHHHHHHHHHHHHHH
Confidence 33444444334 444555777777777777
No 47
>PF02158 Neuregulin: Neuregulin family; InterPro: IPR002154 Neuregulins are a sub-family of EGF-like molecules that have been shown to play multiple essential roles in vertebrate embryogenesis including: cardiac development, Schwann cell and oligodendrocyte differentiation, some aspects of neuronal development, as well as the formation of neuromuscular synapses [, ]. Included in the family are heregulin; neu differentiation factor; acetylcholine receptor synthesis stimulator; glial growth factor; and sensory and motor-neuron derived factor []. Multiple family members are generated by alternate splicing or by use of several cell type-specific transcription initiation sites. In general, they bind to and activate the erbB family of receptor tyrosine kinases (erbB2 (HER2), erbB3 (HER3), and erbB4 (HER4)), functioning both as heterodimers and homodimers. The transmembrane forms of neuregulin 1 (NRG1) are present within synaptic vesicles, including those containing glutamate []. After exocytosis, NRG1 is in the presynaptic membrane, where the ectodomain of NRG1 may be cleaved off. The ectodomain then migrates across the synaptic cleft and binds to and activates a member of the EGF-receptor family on the postsynaptic membrane. This has been shown to increase the expression of certain glutamate-receptor subunits. NRG1 appears to signal for glutamate-receptor subunit expression, localisation, and /or phosphorylation facilitating subsequent glutamate transmission. The NRG1 gene has been identified as a potential gene determining susceptibility to schizophrenia by a combination of genetic linkage and association approaches []. ; GO: 0005102 receptor binding, 0009790 embryo development; PDB: 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=72.68 E-value=1.2 Score=45.87 Aligned_cols=30 Identities=23% Similarity=0.533 Sum_probs=0.0
Q ss_pred ceEEeehhHHHHHHHHHHHHHhhheeccccC
Q 019150 86 LILLFGIGTGLLITAIISVLIICSCAFRRRN 116 (345)
Q Consensus 86 ~iaIIGIavG~~vllLL~vlilcLC~~rRkk 116 (345)
...|.||++|.+|+-++|++ =++|+-||+|
T Consensus 9 VLTITgIcvaLlVVGi~Cvv-~aYCKTKKQR 38 (404)
T PF02158_consen 9 VLTITGICVALLVVGIVCVV-DAYCKTKKQR 38 (404)
T ss_dssp -------------------------------
T ss_pred hhhhhhhhHHHHHHHHHHHH-HHHHHhHHHH
Confidence 56789999999988888884 1445544443
No 48
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=70.42 E-value=2.2 Score=47.34 Aligned_cols=26 Identities=23% Similarity=0.570 Sum_probs=12.1
Q ss_pred eEEeehhHHHHHHHHHHHH-Hhhheec
Q 019150 87 ILLFGIGTGLLITAIISVL-IICSCAF 112 (345)
Q Consensus 87 iaIIGIavG~~vllLL~vl-ilcLC~~ 112 (345)
+..++|..|+++++|++++ +||+|++
T Consensus 273 ~fLl~ILG~~~livl~lL~vLl~yCrr 299 (807)
T PF10577_consen 273 VFLLAILGGTALIVLILLCVLLCYCRR 299 (807)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3445665665553333322 3445544
No 49
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=70.07 E-value=16 Score=33.07 Aligned_cols=12 Identities=8% Similarity=0.086 Sum_probs=7.8
Q ss_pred eeecccccccce
Q 019150 27 KVHFDSTLVGDY 38 (345)
Q Consensus 27 kV~~n~~lfGdY 38 (345)
.+++++..+.+=
T Consensus 86 ~~~i~~~wl~~~ 97 (189)
T PF14610_consen 86 PWTIDPSWLNGE 97 (189)
T ss_pred EEEECHHHhCCC
Confidence 466777776654
No 50
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=67.08 E-value=9 Score=36.25 Aligned_cols=30 Identities=20% Similarity=0.156 Sum_probs=12.7
Q ss_pred EEeehhHHH-HH-HHHHHHHHhhheeccccCC
Q 019150 88 LLFGIGTGL-LI-TAIISVLIICSCAFRRRNS 117 (345)
Q Consensus 88 aIIGIavG~-~v-llLL~vlilcLC~~rRkkk 117 (345)
++|+|++=+ ++ ++++++.+.|++.||..++
T Consensus 101 ~lI~lv~~g~~lLla~~~~~~Y~~~~Rrs~~~ 132 (202)
T PF06365_consen 101 TLIALVTSGSFLLLAILLGAGYCCHQRRSWSK 132 (202)
T ss_pred EEEehHHhhHHHHHHHHHHHHHHhhhhccCCc
Confidence 555555543 33 3333333344444443333
No 51
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=66.83 E-value=2.3 Score=37.77 Aligned_cols=40 Identities=15% Similarity=0.085 Sum_probs=2.4
Q ss_pred ccceEEeehhHHHHHHHHHHHH-HhhheeccccCCCCCCCC
Q 019150 84 SNLILLFGIGTGLLITAIISVL-IICSCAFRRRNSKASPKE 123 (345)
Q Consensus 84 lS~iaIIGIavG~~vllLL~vl-ilcLC~~rRkkkK~ppve 123 (345)
..++++|+..++++++++.++. ++++.++||++|-..|+|
T Consensus 75 ~~l~~pi~~sal~v~lVl~llsg~lv~rrcrrr~~~ttPIe 115 (129)
T PF12191_consen 75 FPLLWPILGSALSVVLVLALLSGFLVWRRCRRREKFTTPIE 115 (129)
T ss_dssp SSSS-------------------------------------
T ss_pred cceehhhhhhHHHHHHHHHHHHHHHHHhhhhccccCCCccc
Confidence 4566677666666653333333 333444444333333443
No 52
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=66.24 E-value=7.6 Score=32.36 Aligned_cols=27 Identities=4% Similarity=-0.202 Sum_probs=15.1
Q ss_pred ceEEeehhHHHHHHHHHHHHHhhheecc
Q 019150 86 LILLFGIGTGLLITAIISVLIICSCAFR 113 (345)
Q Consensus 86 ~iaIIGIavG~~vllLL~vlilcLC~~r 113 (345)
...+||+++..++| +.+++|+++||+|
T Consensus 69 agi~vg~~~~v~~l-v~~l~w~f~~r~k 95 (96)
T PTZ00382 69 AGISVAVVAVVGGL-VGFLCWWFVCRGK 95 (96)
T ss_pred EEEEeehhhHHHHH-HHHHhheeEEeec
Confidence 33345555444433 3334588888985
No 53
>PLN03150 hypothetical protein; Provisional
Probab=61.97 E-value=6.7 Score=41.68 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=11.4
Q ss_pred cceEEeehhHHHHHHHHHHH
Q 019150 85 NLILLFGIGTGLLITAIISV 104 (345)
Q Consensus 85 S~iaIIGIavG~~vllLL~v 104 (345)
+...++++++|+++++++++
T Consensus 542 ~~~~~i~~~~~~~~~~l~~~ 561 (623)
T PLN03150 542 SVGAKIGIAFGVSVAFLFLV 561 (623)
T ss_pred CCceEEEEEhHHHHHHHHHH
Confidence 35556777777666433333
No 54
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=61.85 E-value=6.8 Score=33.52 Aligned_cols=21 Identities=14% Similarity=0.104 Sum_probs=9.9
Q ss_pred eEEeehhHHHHHHHHHHHHHh
Q 019150 87 ILLFGIGTGLLITAIISVLII 107 (345)
Q Consensus 87 iaIIGIavG~~vllLL~vlil 107 (345)
+++++|+|..++|+|++++++
T Consensus 2 W~l~~iii~~i~l~~~~~~~~ 22 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCH 22 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHH
Confidence 455555555554444444333
No 55
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=61.19 E-value=2.7 Score=33.33 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=0.0
Q ss_pred ceEEeehhHHHHHHHHHHHHHhhhe
Q 019150 86 LILLFGIGTGLLITAIISVLIICSC 110 (345)
Q Consensus 86 ~iaIIGIavG~~vllLL~vlilcLC 110 (345)
..+|+|+++|.+++++| +++++++
T Consensus 12 aavIaG~Vvgll~ailL-Ilf~iyR 35 (64)
T PF01034_consen 12 AAVIAGGVVGLLFAILL-ILFLIYR 35 (64)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 55667777777754333 3334443
No 56
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=60.71 E-value=15 Score=34.35 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHhhheeccc
Q 019150 92 IGTGLLITAIISVLIICSCAFRR 114 (345)
Q Consensus 92 IavG~~vllLL~vlilcLC~~rR 114 (345)
.+.|+++.+-|+.|+++++++.|
T Consensus 163 FiGGIVL~LGv~aI~ff~~KF~k 185 (186)
T PF05283_consen 163 FIGGIVLTLGVLAIIFFLYKFCK 185 (186)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcc
Confidence 33456665666666777777653
No 57
>PF05083 LST1: LST-1 protein; InterPro: IPR007775 B144/LST1 is a gene encoded in the human major histocompatibility complex that produces multiple forms of alternatively spliced mRNA and encodes peptides fewer than 100 amino acids in length. B144/LST1 is strongly expressed in dendritic cells. Transfection of B144/LST1 into a variety of cells induces morphologic changes including the production of long, thin filopodia []. A possible role in modulating immune responses. Induces morphological changes including production of filopodia and microspikes when overexpressed in a variety of cell types and may be involved in dendritic cell maturation. Isoform 1 and isoform 2 have an inhibitory effect on lymphocyte proliferation [, ]. ; GO: 0000902 cell morphogenesis, 0006955 immune response, 0016020 membrane
Probab=60.63 E-value=3.7 Score=33.29 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhhheeccccCC
Q 019150 95 GLLITAIISVLIICSCAFRRRNS 117 (345)
Q Consensus 95 G~~vllLL~vlilcLC~~rRkkk 117 (345)
|+++++.+.++.+|||...|+.+
T Consensus 2 ggllll~vvll~~clC~lsrRvk 24 (74)
T PF05083_consen 2 GGLLLLAVVLLSACLCRLSRRVK 24 (74)
T ss_pred cchhhHHHHHHHHHHHHHHhhhh
Confidence 56667777777889998866554
No 58
>PF14851 FAM176: FAM176 family
Probab=59.81 E-value=4.5 Score=36.71 Aligned_cols=28 Identities=36% Similarity=0.489 Sum_probs=19.1
Q ss_pred ccceEEeehhHHHHHHHHHHHHHhhheec
Q 019150 84 SNLILLFGIGTGLLITAIISVLIICSCAF 112 (345)
Q Consensus 84 lS~iaIIGIavG~~vllLL~vlilcLC~~ 112 (345)
..++.|.|+++|-++.|++++ +-+.|+.
T Consensus 22 ~aLYFv~gVC~GLlLtLcllV-~risc~~ 49 (153)
T PF14851_consen 22 FALYFVSGVCAGLLLTLCLLV-IRISCRP 49 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hhheeec
Confidence 457788888888776555554 6667743
No 59
>PTZ00046 rifin; Provisional
Probab=59.25 E-value=3.9 Score=41.67 Aligned_cols=30 Identities=17% Similarity=0.350 Sum_probs=15.7
Q ss_pred eEEeehhHHHHHHHHHHHHHhhheeccccC
Q 019150 87 ILLFGIGTGLLITAIISVLIICSCAFRRRN 116 (345)
Q Consensus 87 iaIIGIavG~~vllLL~vlilcLC~~rRkk 116 (345)
.+|++=++.+++++|+.||+.+.+|-||||
T Consensus 315 taIiaSiiAIvVIVLIMvIIYLILRYRRKK 344 (358)
T PTZ00046 315 TAIIASIVAIVVIVLIMVIIYLILRYRRKK 344 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 345545555555555555555555544443
No 60
>PF13584 BatD: Oxygen tolerance
Probab=58.80 E-value=22 Score=36.06 Aligned_cols=19 Identities=37% Similarity=1.024 Sum_probs=13.3
Q ss_pred cccccccceEE--EEEEecCC
Q 019150 30 FDSTLVGDYKL--LNFTWFEP 48 (345)
Q Consensus 30 ~n~~lfGdY~v--invt~f~P 48 (345)
+=+.--|+|++ |.+.||-|
T Consensus 344 ~ip~~~G~~~lP~i~~~~fdp 364 (484)
T PF13584_consen 344 LIPKKPGDFTLPAIRFSWFDP 364 (484)
T ss_pred EEeCCCCeEEcCCeEEEEEcC
Confidence 33445688876 78888877
No 61
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=56.66 E-value=4.6 Score=41.13 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=15.2
Q ss_pred eEEeehhHHHHHHHHHHHHHhhheeccccC
Q 019150 87 ILLFGIGTGLLITAIISVLIICSCAFRRRN 116 (345)
Q Consensus 87 iaIIGIavG~~vllLL~vlilcLC~~rRkk 116 (345)
.+|++=++.+++++|+.||+.+.+|-||||
T Consensus 310 t~IiaSiIAIvvIVLIMvIIYLILRYRRKK 339 (353)
T TIGR01477 310 TPIIASIIAILIIVLIMVIIYLILRYRRKK 339 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 344544455555555555555555544433
No 62
>PF05510 Sarcoglycan_2: Sarcoglycan alpha/epsilon; InterPro: IPR008908 Sarcoglycans are a subcomplex of transmembrane proteins which are part of the dystrophin-glycoprotein complex. They are expressed in the skeletal, cardiac and smooth muscle. Although numerous studies have been conducted on the sarcoglycan subcomplex in skeletal and cardiac muscle, the manner of the distribution and localisation of these proteins along the nonjunctional sarcolemma is not clear []. This family contains alpha and epsilon members.; GO: 0016012 sarcoglycan complex
Probab=56.34 E-value=6.6 Score=40.38 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHHHHhhheeccccCCCCCCCCCCchhHH
Q 019150 92 IGTGLLITAIISVLIICSCAFRRRNSKASPKETAKPRLL 130 (345)
Q Consensus 92 IavG~~vllLL~vlilcLC~~rRkkkK~ppvet~k~Rtl 130 (345)
++-++++++|+++|.+.+|++|.+.+| +..++..+++.
T Consensus 290 ~iPl~i~llL~llLs~Imc~rREG~~~-rd~~ts~iqm~ 327 (386)
T PF05510_consen 290 AIPLIIALLLLLLLSYIMCCRREGVKK-RDSKTSDIQMV 327 (386)
T ss_pred HHHHHHHHHHHHHHHHHheechHHhhc-chhccCccccc
Confidence 334555566666667778887555433 34444444433
No 63
>PF15050 SCIMP: SCIMP protein
Probab=55.75 E-value=8.8 Score=34.16 Aligned_cols=18 Identities=17% Similarity=0.820 Sum_probs=10.4
Q ss_pred HHHHHHHHhhheeccccC
Q 019150 99 TAIISVLIICSCAFRRRN 116 (345)
Q Consensus 99 llLL~vlilcLC~~rRkk 116 (345)
-+.|.+|++|.|++..|+
T Consensus 20 S~~lglIlyCvcR~~lRq 37 (133)
T PF15050_consen 20 SVVLGLILYCVCRWQLRQ 37 (133)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 334555667777765544
No 64
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=55.53 E-value=23 Score=41.23 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=14.6
Q ss_pred EeehhHHHHHHHHHHHHHhhhee
Q 019150 89 LFGIGTGLLITAIISVLIICSCA 111 (345)
Q Consensus 89 IIGIavG~~vllLL~vlilcLC~ 111 (345)
++|+++|+++.+.||+|++++..
T Consensus 1514 ttGmVvGIvaAaaLcILilL~am 1536 (1591)
T KOG3514|consen 1514 TTGMVVGIVAAAALCILILLYAM 1536 (1591)
T ss_pred ccchhhHHHHHHHHHHHHHHhhc
Confidence 46777888876666665544433
No 65
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=55.34 E-value=11 Score=40.81 Aligned_cols=22 Identities=14% Similarity=0.040 Sum_probs=17.1
Q ss_pred eeeecceeecCCcccccccccC
Q 019150 165 AEFKPGLITLDGHADDWEDIDG 186 (345)
Q Consensus 165 aef~PG~ItlDG~~~dwk~V~G 186 (345)
+.+|.|.-.-+|...++|.++-
T Consensus 704 g~Vy~~~~~~~~~~vavK~~~~ 725 (968)
T PLN00113 704 GASYKGKSIKNGMQFVVKEIND 725 (968)
T ss_pred eeEEEEEECCCCcEEEEEEccC
Confidence 4688888777888888887753
No 66
>PF14986 DUF4514: Domain of unknown function (DUF4514)
Probab=54.06 E-value=12 Score=29.27 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=21.5
Q ss_pred cceEEeehhHHHHHHHHHHHHHhhheec
Q 019150 85 NLILLFGIGTGLLITAIISVLIICSCAF 112 (345)
Q Consensus 85 S~iaIIGIavG~~vllLL~vlilcLC~~ 112 (345)
-.++|||.++|.++-+-.+.+=+|+.++
T Consensus 20 ~KYa~IGtalGvaisAgFLaLKicmIrk 47 (61)
T PF14986_consen 20 IKYAIIGTALGVAISAGFLALKICMIRK 47 (61)
T ss_pred eeeeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999866666667776653
No 67
>PF14979 TMEM52: Transmembrane 52
Probab=54.03 E-value=4.2 Score=37.09 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHH-Hhh--heecccc
Q 019150 94 TGLLITAIISVL-IIC--SCAFRRR 115 (345)
Q Consensus 94 vG~~vllLL~vl-ilc--LC~~rRk 115 (345)
+=+++++|||.+ ..| +|++||+
T Consensus 26 ll~~~llLLCG~ta~C~rfCClrk~ 50 (154)
T PF14979_consen 26 LLIGFLLLLCGLTASCVRFCCLRKQ 50 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333334444433 444 3444433
No 68
>PF03229 Alpha_GJ: Alphavirus glycoprotein J; InterPro: IPR004913 The exact function of the herpesvirus glycoprotein J is unknown, but it appears to play a role in the inhibition of apotosis of the host cell [].; GO: 0019050 suppression by virus of host apoptosis
Probab=53.50 E-value=17 Score=32.22 Aligned_cols=18 Identities=11% Similarity=0.202 Sum_probs=12.0
Q ss_pred EEeehhHHHHHHHHHHHH
Q 019150 88 LLFGIGTGLLITAIISVL 105 (345)
Q Consensus 88 aIIGIavG~~vllLL~vl 105 (345)
-++++++|+++++.|.++
T Consensus 84 ~aLp~VIGGLcaL~Laam 101 (126)
T PF03229_consen 84 FALPLVIGGLCALTLAAM 101 (126)
T ss_pred cchhhhhhHHHHHHHHHH
Confidence 566888998885544443
No 69
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=52.86 E-value=6 Score=41.96 Aligned_cols=30 Identities=30% Similarity=0.598 Sum_probs=16.5
Q ss_pred ceEEeehhHHHHH--HHHHHHHHhhheecccc
Q 019150 86 LILLFGIGTGLLI--TAIISVLIICSCAFRRR 115 (345)
Q Consensus 86 ~iaIIGIavG~~v--llLL~vlilcLC~~rRk 115 (345)
+..+.++++++++ ++.|++-|+|.||+||+
T Consensus 43 L~lla~l~aa~l~l~Ll~ll~yli~~cC~Rr~ 74 (526)
T KOG4433|consen 43 LLLLAALAAACLGLSLLFLLFYLICRCCCRRE 74 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3333444444444 44445557788887665
No 70
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=52.04 E-value=5.4 Score=40.38 Aligned_cols=23 Identities=57% Similarity=1.090 Sum_probs=18.9
Q ss_pred CceeeeeeecC--CceeeecCCCCCC
Q 019150 240 PSIALMFQIGE--DATYHNMGGCKEG 263 (345)
Q Consensus 240 ~~~~~m~~~g~--~a~~~~mggc~~~ 263 (345)
||| +|||+-+ |+||++.|||||-
T Consensus 161 psv-tmm~veekpdvty~dvggckeq 185 (435)
T KOG0729|consen 161 PSV-TMMQVEEKPDVTYSDVGGCKEQ 185 (435)
T ss_pred Cce-eEEEeecCCCcccccccchHHH
Confidence 777 5778876 6899999999974
No 71
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=51.94 E-value=23 Score=31.21 Aligned_cols=51 Identities=22% Similarity=0.529 Sum_probs=41.8
Q ss_pred eecceeecCCcccccccccCccccccccCCCCCCCCCCCCeeEEEEeecCccE
Q 019150 167 FKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHDGHDV 219 (345)
Q Consensus 167 f~PG~ItlDG~~~dwk~V~G~~~~~~~al~~~~~~~y~~g~~~vk~~~d~~~~ 219 (345)
|-.-.|+.++...+|.+.-|..+-+.|.-+| .+...|..+++|+++||+-+
T Consensus 114 ~aK~~v~~~~~~~~~~~~~g~~lEIvPl~~P--~~l~~g~~~~~~vl~~GkPl 164 (215)
T PF10670_consen 114 YAKTLVNVGGPSEDWSKPVGLPLEIVPLTNP--YKLKAGDPLPFQVLFDGKPL 164 (215)
T ss_pred EEEEEEEccCCccccccccCCcEEEEECcCc--ccccCCCEEEEEEEECCeEc
Confidence 3344556678888999999999999999887 44578899999999999854
No 72
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=51.79 E-value=17 Score=37.77 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=10.9
Q ss_pred HHHHHHHHhhheecccc
Q 019150 99 TAIISVLIICSCAFRRR 115 (345)
Q Consensus 99 llLL~vlilcLC~~rRk 115 (345)
++++++.++|.||+||+
T Consensus 54 ll~ll~~~~~~CCcr~~ 70 (418)
T cd07912 54 LLFLLVYLITRCCDRKP 70 (418)
T ss_pred HHHHHHHHHHhccCCCC
Confidence 55555557778887654
No 73
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=51.60 E-value=54 Score=27.77 Aligned_cols=9 Identities=11% Similarity=0.080 Sum_probs=3.9
Q ss_pred ccceEEeeh
Q 019150 84 SNLILLFGI 92 (345)
Q Consensus 84 lS~iaIIGI 92 (345)
.++.+.|.|
T Consensus 34 ws~vv~v~i 42 (91)
T PF01708_consen 34 WSRVVEVAI 42 (91)
T ss_pred ceeEeeeee
Confidence 344444443
No 74
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=48.67 E-value=21 Score=38.44 Aligned_cols=63 Identities=25% Similarity=0.326 Sum_probs=47.2
Q ss_pred ceEeeeeecceeecCCcccccccccCccccccccCCCCCCCCCCCCeeEEEEeec----CccEEEEEEecCc
Q 019150 161 IRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHD----GHDVYFLLQVDGE 228 (345)
Q Consensus 161 ~RI~aef~PG~ItlDG~~~dwk~V~G~~~~~~~al~~~~~~~y~~g~~~vk~~~d----~~~~~f~~~v~g~ 228 (345)
.-+-|.=..+-|.|||..+||...+. .|..+|.+- ......-..+++.|+ |..+|.++||..+
T Consensus 70 ~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~ 136 (703)
T TIGR03785 70 RDLYAYPLDTAIYLDGYLDDWPEYQH-RFQQYGQLQ----TAGKPKPLSLSFTHMVGKYDQYLYLLFQVTDN 136 (703)
T ss_pred cceeeccCCCCeecCCcccccccccc-hhhhchhhh----hcCCCCCcceEEEEeccccCceEEEEEEEcCC
Confidence 34556667889999999999999887 566666421 111223467899999 9999999999876
No 75
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=48.65 E-value=15 Score=38.30 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=22.6
Q ss_pred cceEEeehhHHHHHHHHHHHHHhhheeccccCCCC
Q 019150 85 NLILLFGIGTGLLITAIISVLIICSCAFRRRNSKA 119 (345)
Q Consensus 85 S~iaIIGIavG~~vllLL~vlilcLC~~rRkkkK~ 119 (345)
+.+.|+++.+=.+||+++.+.+|++.+|||++-++
T Consensus 385 ~~~i~~avl~p~~il~~~~~~~~~~v~rrr~~~~d 419 (436)
T PTZ00208 385 TAMIILAVLVPAIILAIIAVAFFIMVKRRRNSSED 419 (436)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhheeeeeccCCchh
Confidence 34455566666666676777677777777666543
No 76
>KOG3637 consensus Vitronectin receptor, alpha subunit [Extracellular structures]
Probab=46.13 E-value=36 Score=39.11 Aligned_cols=15 Identities=20% Similarity=-0.104 Sum_probs=7.7
Q ss_pred hhhhcCeeecccccc
Q 019150 21 FSLTTHKVHFDSTLV 35 (345)
Q Consensus 21 ~~l~~hkV~~n~~lf 35 (345)
.+||.+...-+..=+
T Consensus 919 ~~lw~~tf~~~~~~~ 933 (1030)
T KOG3637|consen 919 GRLWNSTFIEDKSDV 933 (1030)
T ss_pred ehhchhhhhhhhccc
Confidence 455655555444444
No 77
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=44.36 E-value=29 Score=35.23 Aligned_cols=71 Identities=25% Similarity=0.382 Sum_probs=54.6
Q ss_pred eeccCceeeccCCccceEeeeeecceeecCCcccccccccCcccccccc-------------------CCCC-CCCCCCC
Q 019150 146 SHEESGKWSCESDSEIRVLAEFKPGLITLDGHADDWEDIDGSEFSLLPA-------------------LDPH-AEHEYKG 205 (345)
Q Consensus 146 ShEEsGeAtC~s~sE~RI~aef~PG~ItlDG~~~dwk~V~G~~~~~~~a-------------------l~~~-~~~~y~~ 205 (345)
-|+|-+=....-+.-..|.-.-+|+..+++|+..-+..-.|+.|+|+|+ ||++ .+...++
T Consensus 250 nFkETqL~~~r~Gq~a~I~~da~~~~~~~~G~v~~i~~~tg~~fsllp~~natgN~tkvvQRvPVrI~ld~~~~~~~~l~ 329 (352)
T COG1566 250 NFKETQLARVRPGQPAEITLDAYPGNGVVEGIVEGIAPATGSAFSLLPAQNATGNWTKVVQRVPVRIELDPEPLDRHLLR 329 (352)
T ss_pred eeeeeecCcccCCCeEEEEEEcCCCceEEEEEEEEecCCcccccccCCCccCCCCEEEEEEeeeEEEEecCCchhccccc
Confidence 4555555566666667888888888777899999999999999999997 5663 5666777
Q ss_pred CeeEEEEeecC
Q 019150 206 GKMNVKALHDG 216 (345)
Q Consensus 206 g~~~vk~~~d~ 216 (345)
+.|.|.+.-|-
T Consensus 330 ~g~sv~v~vd~ 340 (352)
T COG1566 330 GGLSVVVVVDT 340 (352)
T ss_pred CceEEEEEeCC
Confidence 77777777553
No 78
>PF00974 Rhabdo_glycop: Rhabdovirus spike glycoprotein; InterPro: IPR001903 Different families of ssRNA negative-strand viruses contain glycoproteins responsible for forming spikes on the surface of the virion. The glycoprotein spike is made up of a trimer of glycoproteins. These proteins are frequently abbreviated to G protein. Channel formed by glycoprotein spike is thought to function in a similar manner to Influenza virus M2 protein channel, thus allowing a signal to pass across the viral membrane to signal for viral uncoating [, ].; GO: 0019031 viral envelope; PDB: 2CMZ_C 2J6J_A 3EGD_D.
Probab=42.13 E-value=8.4 Score=40.46 Aligned_cols=15 Identities=33% Similarity=0.789 Sum_probs=0.0
Q ss_pred HHHHHHHHhhheecc
Q 019150 99 TAIISVLIICSCAFR 113 (345)
Q Consensus 99 llLL~vlilcLC~~r 113 (345)
++|+++++.|.|+++
T Consensus 465 ~illi~l~~cc~~~~ 479 (501)
T PF00974_consen 465 LILLILLIRCCCRCR 479 (501)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHhhhhc
Confidence 333444444444443
No 79
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=40.98 E-value=35 Score=36.63 Aligned_cols=14 Identities=7% Similarity=0.010 Sum_probs=6.9
Q ss_pred eeeeeeeeccCcee
Q 019150 140 SIGWVNSHEESGKW 153 (345)
Q Consensus 140 ~strVyShEEsGeA 153 (345)
...++|.++|-+.|
T Consensus 236 VAVKifp~~~kqs~ 249 (534)
T KOG3653|consen 236 VAVKIFPEQEKQSF 249 (534)
T ss_pred eEEEecCHHHHHHH
Confidence 34455555555444
No 80
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=40.04 E-value=34 Score=38.93 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=19.5
Q ss_pred eeeccCceeeccCCcc-----ceEe--------eeeecceeecCCc
Q 019150 145 NSHEESGKWSCESDSE-----IRVL--------AEFKPGLITLDGH 177 (345)
Q Consensus 145 yShEEsGeAtC~s~sE-----~RI~--------aef~PG~ItlDG~ 177 (345)
+.||+=++|--++.-| ++|+ +||+.|..-+-|.
T Consensus 610 ~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgk 655 (996)
T KOG0196|consen 610 HTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGK 655 (996)
T ss_pred ccccCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCCC
Confidence 3788888775555544 2222 1667777666663
No 81
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=39.00 E-value=14 Score=30.59 Aligned_cols=20 Identities=15% Similarity=0.099 Sum_probs=8.7
Q ss_pred EeehhHHHHHHHHHHHHHhh
Q 019150 89 LFGIGTGLLITAIISVLIIC 108 (345)
Q Consensus 89 IIGIavG~~vllLL~vlilc 108 (345)
|+||++-++++++.+++|..
T Consensus 6 i~~iialiv~~iiaIvvW~i 25 (81)
T PF00558_consen 6 ILAIIALIVALIIAIVVWTI 25 (81)
T ss_dssp --HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555544444444444544
No 82
>PF15102 TMEM154: TMEM154 protein family
Probab=38.06 E-value=25 Score=31.90 Aligned_cols=16 Identities=6% Similarity=0.005 Sum_probs=8.2
Q ss_pred CCCccceEEeehhHHHH
Q 019150 81 GKHSNLILLFGIGTGLL 97 (345)
Q Consensus 81 kk~lS~iaIIGIavG~~ 97 (345)
++..+..-.| |.+.+-
T Consensus 49 ~~~~~q~efi-LmIlIP 64 (146)
T PF15102_consen 49 EEDSSQLEFI-LMILIP 64 (146)
T ss_pred CCCCCCcceE-EEEeHH
Confidence 3444555556 445544
No 83
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=38.03 E-value=20 Score=32.77 Aligned_cols=31 Identities=26% Similarity=0.480 Sum_probs=14.7
Q ss_pred eEEeehhHHHHH-HHHHHHHHhhheeccccCC
Q 019150 87 ILLFGIGTGLLI-TAIISVLIICSCAFRRRNS 117 (345)
Q Consensus 87 iaIIGIavG~~v-llLL~vlilcLC~~rRkkk 117 (345)
-+|++|.|-+++ +++++++++-.|+-||...
T Consensus 120 klilaisvtvv~~iliii~CLiei~shr~a~~ 151 (154)
T PF14914_consen 120 KLILAISVTVVVMILIIIFCLIEICSHRRASE 151 (154)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 366667665544 3333333333455544333
No 84
>KOG4482 consensus Sarcoglycan complex, alpha/epsilon subunits [Function unknown]
Probab=37.12 E-value=30 Score=36.11 Aligned_cols=29 Identities=17% Similarity=0.161 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhhheeccccCCCCCCCCC
Q 019150 95 GLLITAIISVLIICSCAFRRRNSKASPKET 124 (345)
Q Consensus 95 G~~vllLL~vlilcLC~~rRkkkK~ppvet 124 (345)
++++++|++++..++|++|.+.+| +..++
T Consensus 305 l~Valll~~~La~imc~rrEg~~~-rd~~t 333 (449)
T KOG4482|consen 305 LGVALLLVLALAYIMCCRREGQKK-RDDKT 333 (449)
T ss_pred HHHHHHHHHHHHHHHhhhhhcccc-ccccc
Confidence 444466667777888887655544 34444
No 85
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=36.52 E-value=12 Score=32.72 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=18.2
Q ss_pred CCCCCCccceEE-eehhHHHHHHHHHHHHHhhheeccccCCCC
Q 019150 78 SNKGKHSNLILL-FGIGTGLLITAIISVLIICSCAFRRRNSKA 119 (345)
Q Consensus 78 Sskkk~lS~iaI-IGIavG~~vllLL~vlilcLC~~rRkkkK~ 119 (345)
..+=.....+.| +|+++|. ++++|++.+++..++||.+...
T Consensus 58 ~h~fs~~~i~~Ii~gv~aGv-Ig~Illi~y~irR~~Kk~~~~~ 99 (122)
T PF01102_consen 58 VHRFSEPAIIGIIFGVMAGV-IGIILLISYCIRRLRKKSSSDV 99 (122)
T ss_dssp SSSSS-TCHHHHHHHHHHHH-HHHHHHHHHHHHHHS-------
T ss_pred ccCccccceeehhHHHHHHH-HHHHHHHHHHHHHHhccCCCCC
Confidence 334334445555 5555554 5555566677776677776443
No 86
>PF13567 DUF4131: Domain of unknown function (DUF4131)
Probab=36.47 E-value=27 Score=28.55 Aligned_cols=17 Identities=29% Similarity=0.478 Sum_probs=7.2
Q ss_pred ecCCcccccccccCccc
Q 019150 173 TLDGHADDWEDIDGSEF 189 (345)
Q Consensus 173 tlDG~~~dwk~V~G~~~ 189 (345)
++.|...+....++...
T Consensus 79 ~v~g~V~~~~~~~~~~~ 95 (176)
T PF13567_consen 79 TVQGTVESVPQIDGRGQ 95 (176)
T ss_pred EEEEEEcccccccCceE
Confidence 33444444444444443
No 87
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=36.25 E-value=32 Score=37.98 Aligned_cols=25 Identities=28% Similarity=0.584 Sum_probs=13.4
Q ss_pred EeehhHHHHHHHHHHHHHhhheecc
Q 019150 89 LFGIGTGLLITAIISVLIICSCAFR 113 (345)
Q Consensus 89 IIGIavG~~vllLL~vlilcLC~~r 113 (345)
+|.+++|.++++++-++.+|+||||
T Consensus 94 ~v~~~i~ll~~il~P~vg~~fCcCR 118 (806)
T PF05478_consen 94 LVCAVIGLLFIILMPLVGLCFCCCR 118 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3444556665555545556666653
No 88
>KOG4818 consensus Lysosomal-associated membrane protein [General function prediction only]
Probab=35.46 E-value=34 Score=35.17 Aligned_cols=30 Identities=23% Similarity=0.482 Sum_probs=18.3
Q ss_pred EEeehhHHHHHHHHHHHHHhhheeccccCC
Q 019150 88 LLFGIGTGLLITAIISVLIICSCAFRRRNS 117 (345)
Q Consensus 88 aIIGIavG~~vllLL~vlilcLC~~rRkkk 117 (345)
.++=|++|++++.+++++++.+|-.||+|+
T Consensus 327 iv~PivVg~~l~gl~~~vliaylIgrr~~~ 356 (362)
T KOG4818|consen 327 IVLPIAVGAILAGLVLVVLIAYLIGRRRSH 356 (362)
T ss_pred eecchHHHHHHHHHHHHHHHHhheeheecc
Confidence 345577887776666666666666544443
No 89
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=35.22 E-value=29 Score=31.31 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHhhheeccccCC
Q 019150 94 TGLLITAIISVLIICSCAFRRRNS 117 (345)
Q Consensus 94 vG~~vllLL~vlilcLC~~rRkkk 117 (345)
++.++++++...++.+|++.||+|
T Consensus 107 l~il~~i~is~~~~~~yr~~r~~~ 130 (139)
T PHA03099 107 VLVLVGIIITCCLLSVYRFTRRTK 130 (139)
T ss_pred HHHHHHHHHHHHHHhhheeeeccc
Confidence 555665555555666677655443
No 90
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=35.06 E-value=12 Score=32.89 Aligned_cols=9 Identities=22% Similarity=0.143 Sum_probs=0.0
Q ss_pred eeeccCcee
Q 019150 145 NSHEESGKW 153 (345)
Q Consensus 145 yShEEsGeA 153 (345)
.++|+.+.+
T Consensus 73 c~~e~~~~q 81 (118)
T PF14991_consen 73 CYSEGGGHQ 81 (118)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 355665544
No 91
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=34.37 E-value=33 Score=40.61 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=7.8
Q ss_pred cccCccccCCCCCC
Q 019150 286 SAIPGRLYGGNPVD 299 (345)
Q Consensus 286 ~~~~g~~yg~n~~d 299 (345)
|-|+||.----++|
T Consensus 380 npi~~~ql~~h~~d 393 (2365)
T COG5178 380 NPILGVQLDNHPYD 393 (2365)
T ss_pred cccccccccccccc
Confidence 56677655444444
No 92
>PF07406 NICE-3: NICE-3 protein; InterPro: IPR010876 This family consists of several eukaryotic NICE-3 and related proteins. The gene coding for NICE-3 is part of the epidermal differentiation complex (EDC), which comprises a large number of genes that are of crucial importance for the maturation of the human epidermis []. The function of NICE-3 is unknown.
Probab=33.54 E-value=53 Score=30.63 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=7.4
Q ss_pred CCccceEE-eehhHHHHH
Q 019150 82 KHSNLILL-FGIGTGLLI 98 (345)
Q Consensus 82 k~lS~iaI-IGIavG~~v 98 (345)
..+|.+.| +-|+.|+++
T Consensus 6 ~~lsGv~vvlv~a~g~l~ 23 (186)
T PF07406_consen 6 EWLSGVNVVLVIAYGSLV 23 (186)
T ss_pred ccccceeeehhhHHHHHH
Confidence 34444444 334444444
No 93
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=33.42 E-value=58 Score=31.93 Aligned_cols=40 Identities=15% Similarity=0.268 Sum_probs=25.6
Q ss_pred CCCC-CCCccceEEeehhHHHHHHHHHHHHHhhheeccccC
Q 019150 77 TSNK-GKHSNLILLFGIGTGLLITAIISVLIICSCAFRRRN 116 (345)
Q Consensus 77 sSsk-kk~lS~iaIIGIavG~~vllLL~vlilcLC~~rRkk 116 (345)
..+| .+..-...-+||++|+++|+.|+.+++.+.+|||++
T Consensus 220 ~~~~l~~G~VVlIslAiALG~v~ll~l~Gii~~~~~r~~~~ 260 (281)
T PF12768_consen 220 GGKKLSRGFVVLISLAIALGTVFLLVLIGIILAYIRRRRQG 260 (281)
T ss_pred ccccccceEEEEEehHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3355 444444444999999998777777666666554333
No 94
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=32.44 E-value=39 Score=27.94 Aligned_cols=34 Identities=9% Similarity=0.249 Sum_probs=15.7
Q ss_pred ccceEEeehhHHHHHHHHHHHHHhhheeccccCC
Q 019150 84 SNLILLFGIGTGLLITAIISVLIICSCAFRRRNS 117 (345)
Q Consensus 84 lS~iaIIGIavG~~vllLL~vlilcLC~~rRkkk 117 (345)
+..++|+++++..++..++-.+++..|++-+++|
T Consensus 4 l~i~~iialiv~~iiaIvvW~iv~ieYrk~~rqr 37 (81)
T PF00558_consen 4 LEILAIIALIVALIIAIVVWTIVYIEYRKIKRQR 37 (81)
T ss_dssp ----HHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888899998887777777777777654443
No 95
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=32.26 E-value=25 Score=31.25 Aligned_cols=40 Identities=15% Similarity=0.097 Sum_probs=18.8
Q ss_pred cceEEeehhHHHHHHHHHHHHHhhheeccccCCCCCCCCCC
Q 019150 85 NLILLFGIGTGLLITAIISVLIICSCAFRRRNSKASPKETA 125 (345)
Q Consensus 85 S~iaIIGIavG~~vllLL~vlilcLC~~rRkkkK~ppvet~ 125 (345)
|-++|++++.-++++.++++.. =.-.-|+||++.+.++++
T Consensus 35 WNysiL~Ls~vvlvi~~~LLgr-si~ANRnrK~~~~~k~~p 74 (125)
T PF15048_consen 35 WNYSILALSFVVLVISFFLLGR-SIQANRNRKMQPQEKQTP 74 (125)
T ss_pred cchHHHHHHHHHHHHHHHHHHH-HhHhccccccccccccCH
Confidence 6777777655555444433322 222333344443444443
No 96
>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=31.86 E-value=20 Score=35.72 Aligned_cols=47 Identities=13% Similarity=0.002 Sum_probs=37.7
Q ss_pred eeeeeeeccCceeeccCCccceEee----eeecceeecCCcccccccccCcc
Q 019150 141 IGWVNSHEESGKWSCESDSEIRVLA----EFKPGLITLDGHADDWEDIDGSE 188 (345)
Q Consensus 141 strVyShEEsGeAtC~s~sE~RI~a----ef~PG~ItlDG~~~dwk~V~G~~ 188 (345)
..+.|+|+|+.+||.+|+++.+|.. .||+|.+ -||...++|+++...
T Consensus 61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l-~~~~~vAVK~~~~~~ 111 (361)
T KOG1187|consen 61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVL-SDGTVVAVKRLSSNS 111 (361)
T ss_pred CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEE-CCCCEEEEEEecCCC
Confidence 6788999999999999999877775 6999999 233678888665533
No 97
>PHA03281 envelope glycoprotein E; Provisional
Probab=31.68 E-value=89 Score=34.18 Aligned_cols=44 Identities=11% Similarity=-0.067 Sum_probs=21.3
Q ss_pred CCCccceEEeehhHHHHHHHH-HHHHHh-hheeccccCCCCCCCCC
Q 019150 81 GKHSNLILLFGIGTGLLITAI-ISVLII-CSCAFRRRNSKASPKET 124 (345)
Q Consensus 81 kk~lS~iaIIGIavG~~vllL-L~vlil-cLC~~rRkkkK~ppvet 124 (345)
.-+...+.+-|.++|+++.++ .++++. .+-+++|++.|...-++
T Consensus 552 p~~~y~~l~~~~a~~~ll~l~~~~~c~~~~~~~~~~~~~~~~~~~s 597 (642)
T PHA03281 552 PFKRYAAITGGFAALALLCLAIALICTAKKFGHKAYRSDKAAYGQS 597 (642)
T ss_pred CeEeehhhhhhhHHHHHHHHHHHHHHHHHHhhhheeeccccccccc
Confidence 334445555778888777333 333322 33333344444444444
No 98
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=30.29 E-value=86 Score=30.36 Aligned_cols=25 Identities=8% Similarity=0.367 Sum_probs=14.4
Q ss_pred ceEEeehhHHHHHHHHHHHHHhhhe
Q 019150 86 LILLFGIGTGLLITAIISVLIICSC 110 (345)
Q Consensus 86 ~iaIIGIavG~~vllLL~vlilcLC 110 (345)
...+|||++|++.++||+++..+++
T Consensus 37 ~~I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 37 VKIMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred eeeeeeeecchhhhHHHHHHHHHHH
Confidence 4455677777776555555444444
No 99
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=30.25 E-value=64 Score=26.39 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=19.0
Q ss_pred cceEEeehhHHHHHHHHHHHHHhhheeccc
Q 019150 85 NLILLFGIGTGLLITAIISVLIICSCAFRR 114 (345)
Q Consensus 85 S~iaIIGIavG~~vllLL~vlilcLC~~rR 114 (345)
+..-++++++=.++++++++++..++.+||
T Consensus 27 ~~~~avaVviPl~L~LCiLvl~yai~~fkr 56 (74)
T PF11857_consen 27 GTVNAVAVVIPLVLLLCILVLIYAIFQFKR 56 (74)
T ss_pred CceeEEEEeHHHHHHHHHHHHHHHhheeee
Confidence 344455566777776666666666666643
No 100
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=30.24 E-value=21 Score=39.38 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=23.2
Q ss_pred ccccccccCccccccccCCCCC-----CCCCCCCeeEEE
Q 019150 178 ADDWEDIDGSEFSLLPALDPHA-----EHEYKGGKMNVK 211 (345)
Q Consensus 178 ~~dwk~V~G~~~~~~~al~~~~-----~~~y~~g~~~vk 211 (345)
..+..++-+--.+-.|++++++ -.|||.-++.+|
T Consensus 505 iv~~Q~vs~~Nss~v~y~~~~~~k~~al~EfPRs~L~~~ 543 (807)
T KOG1094|consen 505 IVTLQGVSGGNSSAVPYLPPGVGKGPALVEFPRSRLRFK 543 (807)
T ss_pred cccccCCCCCccccccccCcccccCcchhhcchhheehh
Confidence 3455667777788888888873 247777666654
No 101
>TIGR03154 sulfolob_CbsA cytochrome b558/566, subunit A. Members of this protein family are CbsA, one subunit of a highly glycosylated, heterodimeric, mono-heme cytochrome b558/566, found in Sulfolobus acidocaldarius and several other members of the Sulfolobales, a branch of the Crenarchaeota.
Probab=30.04 E-value=65 Score=33.53 Aligned_cols=9 Identities=22% Similarity=0.560 Sum_probs=3.8
Q ss_pred ecccccccc
Q 019150 29 HFDSTLVGD 37 (345)
Q Consensus 29 ~~n~~lfGd 37 (345)
-+|.+++..
T Consensus 398 lgdKSiTS~ 406 (465)
T TIGR03154 398 LFDKSITSS 406 (465)
T ss_pred ccccccccc
Confidence 344444443
No 102
>PF00974 Rhabdo_glycop: Rhabdovirus spike glycoprotein; InterPro: IPR001903 Different families of ssRNA negative-strand viruses contain glycoproteins responsible for forming spikes on the surface of the virion. The glycoprotein spike is made up of a trimer of glycoproteins. These proteins are frequently abbreviated to G protein. Channel formed by glycoprotein spike is thought to function in a similar manner to Influenza virus M2 protein channel, thus allowing a signal to pass across the viral membrane to signal for viral uncoating [, ].; GO: 0019031 viral envelope; PDB: 2CMZ_C 2J6J_A 3EGD_D.
Probab=28.88 E-value=19 Score=37.97 Aligned_cols=18 Identities=17% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHhhheeccccC
Q 019150 99 TAIISVLIICSCAFRRRN 116 (345)
Q Consensus 99 llLL~vlilcLC~~rRkk 116 (345)
+++++++++++++++|-+
T Consensus 462 vi~~illi~l~~cc~~~~ 479 (501)
T PF00974_consen 462 VILLILLILLIRCCCRCR 479 (501)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHhhhhc
Confidence 344444444444444444
No 103
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=28.17 E-value=52 Score=31.01 Aligned_cols=9 Identities=11% Similarity=0.527 Sum_probs=4.0
Q ss_pred CCCCCCCCC
Q 019150 116 NSKASPKET 124 (345)
Q Consensus 116 kkK~ppvet 124 (345)
.++.||.++
T Consensus 175 ~rrsppeps 183 (215)
T PF05084_consen 175 GRRSPPEPS 183 (215)
T ss_pred ccCCCCCCC
Confidence 344444444
No 104
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=27.54 E-value=97 Score=26.63 Aligned_cols=77 Identities=14% Similarity=0.243 Sum_probs=44.6
Q ss_pred eeecceeecC-CcccccccccCcccc-ccccCCCCCCCCCCCCeeEEEEeecCccEEEEEEecCceeeecCCcccCCcee
Q 019150 166 EFKPGLITLD-GHADDWEDIDGSEFS-LLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKGENTRCPSIA 243 (345)
Q Consensus 166 ef~PG~ItlD-G~~~dwk~V~G~~~~-~~~al~~~~~~~y~~g~~~vk~~~d~~~~~f~~~v~g~y~~~~~~~~~c~~~~ 243 (345)
-|.|..|++. |+-.-|...++..-. ..+.+.|+....+..+. |..+=+-|+-+|.|.|.=. -|.=.-|-
T Consensus 11 ~F~P~~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~g~~~~~s~~--------g~~~~~tF~~~G~Y~Y~C~-pH~~~GM~ 81 (116)
T TIGR02375 11 VFEPAYIRAAPGDTVTFVPTDKGHNVETIKGMIPEGAEAFKSKI--------NEEYTVTVTEEGVYGVKCT-PHYGMGMV 81 (116)
T ss_pred EEeCCEEEECCCCEEEEEECCCCeeEEEccCCCcCCcccccCCC--------CCEEEEEeCCCEEEEEEcC-CCccCCCE
Confidence 4777777765 777777655443322 22445666666666542 5556667788999999743 22111144
Q ss_pred eeeeecCC
Q 019150 244 LMFQIGED 251 (345)
Q Consensus 244 ~m~~~g~~ 251 (345)
--..||+.
T Consensus 82 G~V~Vg~~ 89 (116)
T TIGR02375 82 ALIQVGDP 89 (116)
T ss_pred EEEEECCC
Confidence 44556664
No 105
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=27.03 E-value=37 Score=37.44 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=19.6
Q ss_pred cccChhhHHHHHhhhhc--------CeeecccccccceEEE
Q 019150 9 ISFSASDAAAINFSLTT--------HKVHFDSTLVGDYKLL 41 (345)
Q Consensus 9 iSFs~~~a~~in~~l~~--------hkV~~n~~lfGdY~vi 41 (345)
-.|-++.+.++...|.+ +.-.--.+.+|+|+|=
T Consensus 153 ~~f~~s~er~laqll~e~~~~~~~~~~R~rRattvGn~tVQ 193 (684)
T PF12877_consen 153 RVFYQSFERRLAQLLAELFGVAQRQRRRFRRATTVGNYTVQ 193 (684)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccceeeccccccceEEE
Confidence 34556666666555432 2334456789999883
No 106
>PF07215 DUF1419: Protein of unknown function (DUF1419); InterPro: IPR009862 This family consists of several bacterial proteins of around 110 residues in length. Members of this family seem to be specific to Agrobacterium species and to Rhizobium loti (Mesorhizobium loti). The function of this family is unknown.
Probab=26.92 E-value=56 Score=28.56 Aligned_cols=38 Identities=32% Similarity=0.631 Sum_probs=27.6
Q ss_pred ccccccCCCCC----CCCCCCCeeEEEEeecCccEEEEEEecCceeeecC
Q 019150 189 FSLLPALDPHA----EHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKG 234 (345)
Q Consensus 189 ~~~~~al~~~~----~~~y~~g~~~vk~~~d~~~~~f~~~v~g~y~~~~~ 234 (345)
|-+||-|.=-. -.||..|.+| .|||-|.|||..+|=.+
T Consensus 57 leiLPPL~~rg~mFamrEf~tgsVT--------SVFf~l~Idg~~R~Fhg 98 (111)
T PF07215_consen 57 LEILPPLWMRGDMFAMREFLTGSVT--------SVFFALRIDGRIRYFHG 98 (111)
T ss_pred HhhCCchheecchhhhhhhccCCee--------eEEEEEEECCceeEEEE
Confidence 45566554332 2588889987 69999999999888543
No 107
>PTZ00045 apical membrane antigen 1; Provisional
Probab=26.24 E-value=47 Score=36.18 Aligned_cols=29 Identities=10% Similarity=0.102 Sum_probs=16.8
Q ss_pred CccceEEeehhHHHHHHHHHHHHHhhheec
Q 019150 83 HSNLILLFGIGTGLLITAIISVLIICSCAF 112 (345)
Q Consensus 83 ~lS~iaIIGIavG~~vllLL~vlilcLC~~ 112 (345)
+.+.++|+.|+++++++++|+ +++.+...
T Consensus 511 ~~~~~~i~iia~~~~~~~vl~-~~~~~~~~ 539 (595)
T PTZ00045 511 KKKRILIIIIAATGAVVLVLL-AYFSYRYY 539 (595)
T ss_pred cccceehhHHHHHHHHHHHHH-HHHHHHHh
Confidence 445777777777777654444 34444433
No 108
>COG2421 Predicted acetamidase/formamidase [Energy production and conversion]
Probab=25.23 E-value=87 Score=31.63 Aligned_cols=27 Identities=33% Similarity=0.722 Sum_probs=25.8
Q ss_pred CCCCeeEEEEeecCccEEEEEEecCce
Q 019150 203 YKGGKMNVKALHDGHDVYFLLQVDGEY 229 (345)
Q Consensus 203 y~~g~~~vk~~~d~~~~~f~~~v~g~y 229 (345)
+.||+|-+|-+.-|-.||+=.+|+|++
T Consensus 156 ~~GGNlD~k~l~~GstvylPV~V~GAl 182 (305)
T COG2421 156 EHGGNLDIKDLTEGSTVYLPVFVEGAL 182 (305)
T ss_pred ccCCcCChhhccCCCEEEEEEEEcCce
Confidence 779999999999999999999999986
No 109
>PHA03273 envelope glycoprotein C; Provisional
Probab=25.16 E-value=67 Score=34.23 Aligned_cols=12 Identities=17% Similarity=0.315 Sum_probs=6.1
Q ss_pred ceEEeehhHHHH
Q 019150 86 LILLFGIGTGLL 97 (345)
Q Consensus 86 ~iaIIGIavG~~ 97 (345)
++.||||+.|++
T Consensus 447 visivaV~~g~~ 458 (486)
T PHA03273 447 LTSIIAVTCGAA 458 (486)
T ss_pred EEEehHHHHHHH
Confidence 444556555533
No 110
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=25.15 E-value=24 Score=29.71 Aligned_cols=11 Identities=45% Similarity=1.078 Sum_probs=5.6
Q ss_pred HhhheeccccC
Q 019150 106 IICSCAFRRRN 116 (345)
Q Consensus 106 ilcLC~~rRkk 116 (345)
.+|.|.+||+|
T Consensus 36 c~c~~~~~r~r 46 (102)
T PF11669_consen 36 CCCACRHRRRR 46 (102)
T ss_pred HHHHHHHHHHH
Confidence 44555555544
No 111
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=25.13 E-value=33 Score=36.89 Aligned_cols=31 Identities=13% Similarity=0.136 Sum_probs=22.8
Q ss_pred CccceEEeehhHHHHHHHHHHHHHhhheecc
Q 019150 83 HSNLILLFGIGTGLLITAIISVLIICSCAFR 113 (345)
Q Consensus 83 ~lS~iaIIGIavG~~vllLL~vlilcLC~~r 113 (345)
..|.-+|+|+.++++++.-||||-|+++++|
T Consensus 544 ~~s~~av~gllv~~~~i~tvivisl~mlrkr 574 (615)
T KOG3540|consen 544 GRSASAVIGLLVSAVFIATVIVISLVMLRKR 574 (615)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3456788888888888777777777777643
No 112
>PRK14766 lipoprotein signal peptidase; Provisional
Probab=24.34 E-value=36 Score=32.17 Aligned_cols=35 Identities=9% Similarity=0.151 Sum_probs=17.1
Q ss_pred eehhHHHHHHHHHHHHHhhheeccccCCCCCCCCC
Q 019150 90 FGIGTGLLITAIISVLIICSCAFRRRNSKASPKET 124 (345)
Q Consensus 90 IGIavG~~vllLL~vlilcLC~~rRkkkK~ppvet 124 (345)
++|.+|++++++++++-..+.+.++.|+|...+|+
T Consensus 162 i~I~iG~~l~vi~li~~~~~~~~~~~~~~~~~~~~ 196 (201)
T PRK14766 162 LYVNIAIGLTILFTIIELVLYIKSKIKTKKEKIEN 196 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHhhc
Confidence 34777766544444433344444444444444444
No 113
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=23.17 E-value=69 Score=27.68 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=12.2
Q ss_pred ceEEeehhHHHHHHHHHHHH
Q 019150 86 LILLFGIGTGLLITAIISVL 105 (345)
Q Consensus 86 ~iaIIGIavG~~vllLL~vl 105 (345)
-...||++++++++.||+++
T Consensus 17 W~~LVGVv~~al~~SlLIal 36 (102)
T PF15176_consen 17 WPFLVGVVVTALVTSLLIAL 36 (102)
T ss_pred cHhHHHHHHHHHHHHHHHHH
Confidence 34457777777775555543
No 114
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=23.04 E-value=17 Score=32.00 Aligned_cols=9 Identities=22% Similarity=0.305 Sum_probs=0.0
Q ss_pred heeccccCC
Q 019150 109 SCAFRRRNS 117 (345)
Q Consensus 109 LC~~rRkkk 117 (345)
+|++|+.-|
T Consensus 46 YckRRSGYk 54 (118)
T PF14991_consen 46 YCKRRSGYK 54 (118)
T ss_dssp ---------
T ss_pred eeeecchhh
Confidence 455444433
No 115
>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=22.71 E-value=2.1e+02 Score=28.32 Aligned_cols=12 Identities=33% Similarity=0.421 Sum_probs=9.3
Q ss_pred eeeeeeeeccCc
Q 019150 140 SIGWVNSHEESG 151 (345)
Q Consensus 140 ~strVyShEEsG 151 (345)
...|+|.+.|.+
T Consensus 154 ~~~wv~~~~~~~ 165 (289)
T PF07466_consen 154 PEYWVYGSSESQ 165 (289)
T ss_pred cCceEEEeeccc
Confidence 778888887775
No 116
>PHA03286 envelope glycoprotein E; Provisional
Probab=22.23 E-value=33 Score=36.41 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=12.3
Q ss_pred eehhHHHHH-HHHHHHHHhhheeccccC
Q 019150 90 FGIGTGLLI-TAIISVLIICSCAFRRRN 116 (345)
Q Consensus 90 IGIavG~~v-llLL~vlilcLC~~rRkk 116 (345)
.-+++|+++ +++..+++.++.++||++
T Consensus 394 ~s~~~~~~~~~~~~~~~~~~~~~r~~~~ 421 (492)
T PHA03286 394 SSMAAGAILVVLLFALCIAGLYRRRRRH 421 (492)
T ss_pred HHHHHHHHHHHHHHHHHhHhHhhhhhhh
Confidence 334445444 344444455555544433
No 117
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=22.19 E-value=29 Score=31.27 Aligned_cols=15 Identities=33% Similarity=0.762 Sum_probs=7.6
Q ss_pred ecceeecCCcccccccccC
Q 019150 168 KPGLITLDGHADDWEDIDG 186 (345)
Q Consensus 168 ~PG~ItlDG~~~dwk~V~G 186 (345)
+.|.+ .-+|.++|-|
T Consensus 82 kvgvv----RYnAF~dmGg 96 (151)
T PF14584_consen 82 KVGVV----RYNAFEDMGG 96 (151)
T ss_pred eEEEE----EccCcccccc
Confidence 44555 3445555533
No 118
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=22.16 E-value=80 Score=24.98 Aligned_cols=19 Identities=32% Similarity=0.548 Sum_probs=9.7
Q ss_pred hhHHHHHHHHHHHHHhhhe
Q 019150 92 IGTGLLITAIISVLIICSC 110 (345)
Q Consensus 92 IavG~~vllLL~vlilcLC 110 (345)
++++++++++++++++.+|
T Consensus 70 ~i~~~iv~~~~~~i~~~~~ 88 (89)
T PF00957_consen 70 IIIIIIVIIIILIIIIVIC 88 (89)
T ss_dssp HHHHHHHHHHHHHHHHTT-
T ss_pred HhHHhhhhhhhhHHHHHHh
Confidence 4455555555555555555
No 119
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=21.77 E-value=1.3e+02 Score=27.71 Aligned_cols=8 Identities=25% Similarity=0.410 Sum_probs=3.1
Q ss_pred eEEEEeec
Q 019150 208 MNVKALHD 215 (345)
Q Consensus 208 ~~vk~~~d 215 (345)
++|-...+
T Consensus 92 fvVNL~~~ 99 (182)
T PRK08455 92 FTVNLLSQ 99 (182)
T ss_pred EEEEccCC
Confidence 34443333
No 120
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=21.60 E-value=41 Score=37.81 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=13.1
Q ss_pred HHHHHHHHhhheec-cccCCCC
Q 019150 99 TAIISVLIICSCAF-RRRNSKA 119 (345)
Q Consensus 99 llLL~vlilcLC~~-rRkkkK~ 119 (345)
+++|++++||++.+ +|+|+..
T Consensus 282 ~~livl~lL~vLl~yCrrkc~~ 303 (807)
T PF10577_consen 282 TALIVLILLCVLLCYCRRKCLK 303 (807)
T ss_pred HHHHHHHHHHHHHHhhhcccCC
Confidence 66677777775554 6666433
No 121
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=21.58 E-value=1.3e+02 Score=28.86 Aligned_cols=19 Identities=16% Similarity=-0.032 Sum_probs=11.1
Q ss_pred eeccccccc--ceEEEEEEec
Q 019150 28 VHFDSTLVG--DYKLLNFTWF 46 (345)
Q Consensus 28 V~~n~~lfG--dY~vinvt~f 46 (345)
...-+...| +|+=--+-|.
T Consensus 141 ~~pls~~~~~~~YtC~l~GYP 161 (211)
T PF02124_consen 141 RRPLSDEDGPVEYTCRLIGYP 161 (211)
T ss_pred ccCCCccCCceeEEEEEeeCC
Confidence 344455566 6766666664
No 122
>PF15298 AJAP1_PANP_C: AJAP1/PANP C-terminus
Probab=21.30 E-value=1.9e+02 Score=27.77 Aligned_cols=33 Identities=21% Similarity=0.498 Sum_probs=20.3
Q ss_pred eEEeehhHHHHHHHHHHHHHhhheeccccCCCC
Q 019150 87 ILLFGIGTGLLITAIISVLIICSCAFRRRNSKA 119 (345)
Q Consensus 87 iaIIGIavG~~vllLL~vlilcLC~~rRkkkK~ 119 (345)
|+-|=|.+=+++++||..|+|=+||-|..|++.
T Consensus 101 ~iTITvSlImViaAliTtlvlK~C~~~s~~~r~ 133 (205)
T PF15298_consen 101 IITITVSLIMVIAALITTLVLKNCCAQSQNRRR 133 (205)
T ss_pred EEEEeeehhHHHHHhhhhhhhhhhhhhhcccCC
Confidence 333434444555777777788888877666543
No 123
>PLN03160 uncharacterized protein; Provisional
Probab=21.13 E-value=1.5e+02 Score=27.84 Aligned_cols=10 Identities=20% Similarity=0.481 Sum_probs=6.3
Q ss_pred CCCCeeEEEE
Q 019150 203 YKGGKMNVKA 212 (345)
Q Consensus 203 y~~g~~~vk~ 212 (345)
-.+|+|.+.+
T Consensus 164 ~~~G~v~l~~ 173 (219)
T PLN03160 164 ISSGLLNMNS 173 (219)
T ss_pred hhCCeEEEEE
Confidence 4467777664
No 124
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=20.60 E-value=1.3e+02 Score=35.83 Aligned_cols=27 Identities=19% Similarity=0.437 Sum_probs=15.8
Q ss_pred ceEEeehhHHHHHHHHHHHHHhhheecc
Q 019150 86 LILLFGIGTGLLITAIISVLIICSCAFR 113 (345)
Q Consensus 86 ~iaIIGIavG~~vllLL~vlilcLC~~r 113 (345)
+..|+ |+.+++++++++++++++|++|
T Consensus 1059 ll~i~-l~~~~vi~i~~~~~v~v~C~~r 1085 (1381)
T KOG4221|consen 1059 LLDII-LVAVAVILILVLLLVLVTCRRR 1085 (1381)
T ss_pred eeeee-eehhhhHHHHHHhhheeEEecc
Confidence 44454 5556666666666566666655
No 125
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=20.57 E-value=37 Score=32.95 Aligned_cols=29 Identities=10% Similarity=0.123 Sum_probs=18.6
Q ss_pred ceEEeehhHHHHHHHHHHHHHhhheecccc
Q 019150 86 LILLFGIGTGLLITAIISVLIICSCAFRRR 115 (345)
Q Consensus 86 ~iaIIGIavG~~vllLL~vlilcLC~~rRk 115 (345)
.-+|||++++++++++|+. -++-.||++.
T Consensus 273 vPIaVG~~La~lvlivLia-Yli~Rrr~~~ 301 (306)
T PF01299_consen 273 VPIAVGAALAGLVLIVLIA-YLIGRRRSRA 301 (306)
T ss_pred HHHHHHHHHHHHHHHHHHh-heeEeccccc
Confidence 3444899988776554444 6666676664
No 126
>PHA03292 envelope glycoprotein I; Provisional
Probab=20.47 E-value=1.7e+02 Score=30.77 Aligned_cols=19 Identities=16% Similarity=0.380 Sum_probs=10.0
Q ss_pred ceEEeehhHHHHHHHHHHH
Q 019150 86 LILLFGIGTGLLITAIISV 104 (345)
Q Consensus 86 ~iaIIGIavG~~vllLL~v 104 (345)
..++|-|-+.+++++||.+
T Consensus 317 ~~a~ivip~~~~~llll~~ 335 (413)
T PHA03292 317 IVAMIVIPTACVVLLLLAV 335 (413)
T ss_pred EEEEEEhHHHHHHHHHHHH
Confidence 4455556666665444443
No 127
>PF06040 Adeno_E3: Adenovirus E3 protein; InterPro: IPR009266 This family consists of several Adenovirus E3 proteins. The E3 protein does not seem to be essential for virus replication in cultured cells suggesting that the protein may function in virus-host interactions [].
Probab=20.35 E-value=50 Score=29.31 Aligned_cols=16 Identities=13% Similarity=0.144 Sum_probs=9.3
Q ss_pred eeecccccccceEEEE
Q 019150 27 KVHFDSTLVGDYKLLN 42 (345)
Q Consensus 27 kV~~n~~lfGdY~vin 42 (345)
-+-+.|-+-|.|.-.+
T Consensus 11 L~L~~P~~~gtyqc~s 26 (127)
T PF06040_consen 11 LPLHQPFVEGTYQCQS 26 (127)
T ss_pred CEEeccccCCceeeec
Confidence 4556666667665443
No 128
>PHA03282 envelope glycoprotein E; Provisional
Probab=20.32 E-value=81 Score=33.88 Aligned_cols=13 Identities=23% Similarity=0.360 Sum_probs=7.8
Q ss_pred HHHhhheeccccC
Q 019150 104 VLIICSCAFRRRN 116 (345)
Q Consensus 104 vlilcLC~~rRkk 116 (345)
.+|.|+-|+||+.
T Consensus 426 svw~C~~c~r~ra 438 (540)
T PHA03282 426 SVWACVTCRRARA 438 (540)
T ss_pred hheeeeeehhhhh
Confidence 3477777665543
No 129
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=20.24 E-value=31 Score=32.95 Aligned_cols=29 Identities=31% Similarity=0.291 Sum_probs=15.3
Q ss_pred CCCCccceEEeehhHHHHHHHHHHHHHhhhe
Q 019150 80 KGKHSNLILLFGIGTGLLITAIISVLIICSC 110 (345)
Q Consensus 80 kkk~lS~iaIIGIavG~~vllLL~vlilcLC 110 (345)
|+++.++++= |++|.++||||++++.+|.
T Consensus 8 KrRK~N~iLN--iaI~IV~lLIiiva~~lf~ 36 (217)
T PF07423_consen 8 KRRKTNKILN--IAIGIVSLLIIIVAYQLFF 36 (217)
T ss_pred HhhhhhhhHH--HHHHHHHHHHHHHhhhhee
Confidence 4555555444 4455555555555555554
Done!