Query 019150
Match_columns 345
No_of_seqs 86 out of 88
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 11:40:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019150.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019150hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ivf_C Ethylbenzene dehydrogen 99.8 1.1E-21 3.6E-26 179.9 7.7 119 171-314 11-140 (214)
2 2k1k_A Ephrin type-A receptor 96.5 0.00065 2.2E-08 47.1 1.1 30 80-109 4-34 (38)
3 2ks1_B Epidermal growth factor 96.2 0.0018 6.3E-08 46.3 1.8 34 85-118 9-43 (44)
4 2l2t_A Receptor tyrosine-prote 95.9 0.0026 9E-08 45.6 1.5 35 84-118 7-42 (44)
5 2jwa_A Receptor tyrosine-prote 95.3 0.0042 1.4E-07 44.6 0.9 32 86-117 11-42 (44)
6 1i82_A Xylanase A, endo-1,4-be 94.6 0.05 1.7E-06 46.5 5.8 89 165-258 3-94 (189)
7 2k9y_A Ephrin type-A receptor 90.2 0.088 3E-06 35.9 1.1 13 87-99 13-25 (41)
8 1q55_A EP-cadherin, C-cadherin 88.2 0.093 3.2E-06 55.9 0.0 25 81-105 699-723 (880)
9 2klu_A T-cell surface glycopro 83.3 0.94 3.2E-05 35.2 3.4 27 92-118 12-40 (70)
10 2l34_A TYRO protein tyrosine k 81.9 0.39 1.3E-05 32.3 0.7 22 83-104 3-24 (33)
11 2knc_A Integrin alpha-IIB; tra 79.0 0.81 2.8E-05 34.0 1.7 13 86-98 12-24 (54)
12 2l8s_A Integrin alpha-1; trans 70.5 1.5 5.2E-05 32.6 1.3 11 88-98 11-21 (54)
13 2llm_A Amyloid beta A4 protein 71.3 1.1 3.6E-05 32.1 0.0 28 85-112 15-42 (43)
14 1iij_A ERBB-2 receptor protein 58.0 0.7 2.4E-05 31.6 -2.4 7 89-95 10-16 (35)
15 2k1a_A Integrin alpha-IIB; sin 57.7 4.9 0.00017 28.3 1.9 13 86-98 10-22 (42)
16 1cd1_A CD1, MCD1D.1; immunolog 56.2 2.4 8.1E-05 39.5 0.0 9 40-48 214-222 (315)
17 2k9y_A Ephrin type-A receptor 52.4 6.9 0.00023 26.3 1.9 19 86-104 9-27 (41)
18 2lp1_A C99; alzheimer'S D memb 55.9 3.3 0.00011 35.2 0.0 27 85-111 28-54 (122)
19 1s7q_A H-2KB, H-2 class I hist 49.6 3.5 0.00012 39.2 0.0 15 85-99 279-293 (348)
20 2jwa_A Receptor tyrosine-prote 49.2 8.8 0.0003 27.4 2.0 28 92-119 14-41 (44)
21 2jp3_A FXYD domain-containing 43.0 11 0.00037 29.2 1.8 8 90-97 20-27 (67)
22 2knc_A Integrin alpha-IIB; tra 42.7 18 0.00063 26.7 3.0 14 92-105 14-28 (54)
23 2zxe_G FXYD10, phospholemman-l 40.2 9.5 0.00032 30.0 1.1 8 90-97 22-29 (74)
24 2l8s_A Integrin alpha-1; trans 38.1 25 0.00087 26.0 3.1 14 92-105 11-25 (54)
25 2ks1_B Epidermal growth factor 36.1 21 0.0007 25.3 2.3 29 90-118 11-40 (44)
26 1q55_A EP-cadherin, C-cadherin 34.9 8.1 0.00028 41.2 0.0 12 306-317 863-874 (880)
27 2jo1_A Phospholemman; FXYD1, N 33.3 20 0.0007 28.0 2.0 10 110-119 40-49 (72)
28 1q2j_A MU-conotoxin SMIIIA; HE 32.8 26 0.00087 22.5 2.0 19 258-276 1-19 (26)
29 3hd7_A Vesicle-associated memb 27.8 34 0.0012 26.9 2.5 17 94-110 74-90 (91)
30 2cqw_A Sushi domain containing 27.8 8.9 0.0003 30.8 -0.9 16 37-52 67-82 (84)
31 2l2t_A Receptor tyrosine-prote 26.7 38 0.0013 24.0 2.3 29 91-119 11-40 (44)
32 2kog_A Vesicle-associated memb 25.9 34 0.0012 28.3 2.3 17 94-110 102-118 (119)
33 2k9j_B Integrin beta-3; transm 24.7 15 0.00051 25.7 -0.1 6 85-90 8-13 (43)
34 3ug3_A Alpha-L-arabinofuranosi 22.7 24 0.00081 35.8 0.9 49 285-339 49-113 (504)
35 2knc_B Integrin beta-3; transm 21.7 22 0.00077 27.6 0.4 11 88-98 9-19 (79)
No 1
>2ivf_C Ethylbenzene dehydrogenase gamma-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=99.85 E-value=1.1e-21 Score=179.86 Aligned_cols=119 Identities=21% Similarity=0.305 Sum_probs=107.8
Q ss_pred eeecCCcccccccccCcccccccc-----CCCCC-----CCCCCCCeeEEEEeecCccEEEEEEecCceeeecCC-cccC
Q 019150 171 LITLDGHADDWEDIDGSEFSLLPA-----LDPHA-----EHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKGE-NTRC 239 (345)
Q Consensus 171 ~ItlDG~~~dwk~V~G~~~~~~~a-----l~~~~-----~~~y~~g~~~vk~~~d~~~~~f~~~v~g~y~~~~~~-~~~c 239 (345)
.|++|+++.+|+++++.+++|.|+ +|+++ ..++...+|+|||+|||++|||+|+.+.+|++...+ ...|
T Consensus 11 ~~~~d~~~~~W~~ap~~~v~L~~~~~~~p~~~~~~~~~~~~~~~~~~v~VkAa~dg~~i~f~l~W~D~t~~~~~~~~~f~ 90 (214)
T 2ivf_C 11 ELLLDLDAPIWAGAESTTFEMFPTPLVMVKEVSPFLALSEGHGVIKRLDVAALHNGSMIALRLKWASEKHDKIVDLNSFV 90 (214)
T ss_dssp HHHTCTTCHHHHTSCEEEEECEECCGGGGTTTCTTGGGCCSCCCCCEEEEEEEECSSEEEEEEEEECCCCCSCCSTTCCC
T ss_pred cccCCCChHHHhcCCceEEEccCCccccccccccccccccCCCCceEEEEEEEECCCeEEEEEEECCCCCCccccccccC
Confidence 468899999999999999999999 88887 788999999999999999999999999999998777 7779
Q ss_pred CceeeeeeecCCceeeecCCCCCCCCcccccccCCceeeEEEEEeccccCccccCCCCCCCCCCCCCCcccccee
Q 019150 240 PSIALMFQIGEDATYHNMGGCKEGIGSCTSKTCKGHEVDIMHFSIGSAIPGRLYGGNPVDNSEGNGGDRFGHLVD 314 (345)
Q Consensus 240 ~~~~~m~~~g~~a~~~~mggc~~~~~~c~~~~c~~~~vdi~h~~~~~~~~g~~yg~n~~d~~~g~g~d~~~~~~d 314 (345)
..||+||++|++++|+.||. .||+|||+||..+. |.++|..++| ||++.+
T Consensus 91 D~vAvmfp~~~~~~~~~MG~-------------~~~~vdiw~Wka~~---------~~~~~~~a~G---fgs~~~ 140 (214)
T 2ivf_C 91 DGVGAMFPVARGAQAVTMGA-------------TGRPVNAWYWKANA---------NEPMEIVAEG---FSAVRR 140 (214)
T ss_dssp CEEEEEEESSTTCCGGGTCB-------------TTBCEEEEEEETTC---------SSCEEEEESS---TTSEEE
T ss_pred ceEEEEeEcCCCCcccccCC-------------CCcEEEEEEEecCC---------CcceeeccCC---cccccc
Confidence 99999999999999999994 67999999999875 4577777766 999887
No 2
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=96.54 E-value=0.00065 Score=47.14 Aligned_cols=30 Identities=13% Similarity=0.166 Sum_probs=20.4
Q ss_pred CCCCccceEEeehhHHHHH-HHHHHHHHhhh
Q 019150 80 KGKHSNLILLFGIGTGLLI-TAIISVLIICS 109 (345)
Q Consensus 80 kkk~lS~iaIIGIavG~~v-llLL~vlilcL 109 (345)
.++.+|..+|+||++|.++ ++++..+++++
T Consensus 4 ~~~~ls~GaIAGiVvG~v~gv~li~~l~~~~ 34 (38)
T 2k1k_A 4 VSRGLTGGEIVAVIFGLLLGAALLLGILVFR 34 (38)
T ss_dssp SSTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCceeeeehHHHHHHHHHHHHHHHH
Confidence 3456789999999999987 44444433333
No 3
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=96.16 E-value=0.0018 Score=46.29 Aligned_cols=34 Identities=15% Similarity=-0.008 Sum_probs=19.5
Q ss_pred cceEEeehhHHHHH-HHHHHHHHhhheeccccCCC
Q 019150 85 NLILLFGIGTGLLI-TAIISVLIICSCAFRRRNSK 118 (345)
Q Consensus 85 S~iaIIGIavG~~v-llLL~vlilcLC~~rRkkkK 118 (345)
+..+|++.++|+++ +++++++++++.++||+++|
T Consensus 9 ~~~~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~~k 43 (44)
T 2ks1_B 9 KIPSIATGMVGALLLLLVVALGIGLFMRRRHIVRK 43 (44)
T ss_dssp CSSSSTHHHHHHHHHHHHHHHHHHHHHHTTTCCSC
T ss_pred CcceEEeehhHHHHHHHHHHHHHHHHhhhhHhhcc
Confidence 34557666666555 55555555666665555444
No 4
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=95.87 E-value=0.0026 Score=45.58 Aligned_cols=35 Identities=14% Similarity=0.067 Sum_probs=20.2
Q ss_pred ccceEEeehhHHHHH-HHHHHHHHhhheeccccCCC
Q 019150 84 SNLILLFGIGTGLLI-TAIISVLIICSCAFRRRNSK 118 (345)
Q Consensus 84 lS~iaIIGIavG~~v-llLL~vlilcLC~~rRkkkK 118 (345)
.+..+|++.++|+++ ++++.++++++.++||+++|
T Consensus 7 s~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~k 42 (44)
T 2l2t_A 7 ARTPLIAAGVIGGLFILVIVGLTFAVYVRRKSIKKK 42 (44)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred CCcceEEEeehHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 345667777777665 55555555556555544443
No 5
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=95.35 E-value=0.0042 Score=44.56 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=18.2
Q ss_pred ceEEeehhHHHHHHHHHHHHHhhheeccccCC
Q 019150 86 LILLFGIGTGLLITAIISVLIICSCAFRRRNS 117 (345)
Q Consensus 86 ~iaIIGIavG~~vllLL~vlilcLC~~rRkkk 117 (345)
...|+|+++|.++++++.++++++.++||.++
T Consensus 11 ~~~Ia~~vVGvll~vi~~l~~~~~~RRR~~~~ 42 (44)
T 2jwa_A 11 LTSIISAVVGILLVVVLGVVFGILIKRRQQKI 42 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCC
T ss_pred ccchHHHHHHHHHHHHHHHHHHhheehhhhhc
Confidence 44577888884445555555555555544443
No 6
>1i82_A Xylanase A, endo-1,4-beta-xylanase A; cellobiose complex, hydrolase; HET: BGC; 1.90A {Thermotoga maritima} SCOP: b.1.9.2 PDB: 1i8a_A* 1i8u_A
Probab=94.60 E-value=0.05 Score=46.54 Aligned_cols=89 Identities=19% Similarity=0.268 Sum_probs=54.1
Q ss_pred eeeecceeecCCcccc-cccccCccccccccCCCCCCCCCCCCeeEEEEeecCccEEEEEEecCceeeecC-CcccCCce
Q 019150 165 AEFKPGLITLDGHADD-WEDIDGSEFSLLPALDPHAEHEYKGGKMNVKALHDGHDVYFLLQVDGEYVYSKG-ENTRCPSI 242 (345)
Q Consensus 165 aef~PG~ItlDG~~~d-wk~V~G~~~~~~~al~~~~~~~y~~g~~~vk~~~d~~~~~f~~~v~g~y~~~~~-~~~~c~~~ 242 (345)
|....+.|++||..++ |++.+-......- .+...+.=+-+||++||++.+|++++|--+.-.... .--.--+|
T Consensus 3 a~~~~~~~~IDG~ld~~W~~a~~~~~~~~~-----~g~~~~~~~t~~~~~~d~~~LYv~~~v~D~~~~~~~~~~~~~D~v 77 (189)
T 1i82_A 3 ATAKYGTPVIDGEIDEIWNTTEEIETKAVA-----MGSLDKNATAKVRVLWDENYLYVLAIVKDPVLNKDNSNPWEQDSV 77 (189)
T ss_dssp EEEEECCCCSSSSCCGGGGGSCEEECCEEE-----ESCTTTSCEEEEEEEECSSEEEEEEEEECSSCCCCSSSGGGSSEE
T ss_pred eeeccCCceECCccchhhccCccEeeeeee-----cCCcCCCCcEEEEEEEcCCceEEEEEEECCCcccCCCCCccCCeE
Confidence 4556778899999777 9988763321111 122223447899999999999999999776543211 11112335
Q ss_pred eeeeee-cCCceeeecC
Q 019150 243 ALMFQI-GEDATYHNMG 258 (345)
Q Consensus 243 ~~m~~~-g~~a~~~~mg 258 (345)
-+.+.- ++..+||+.+
T Consensus 78 eifid~~~~~~~~y~~~ 94 (189)
T 1i82_A 78 EIFIDENNHKTGYYEDD 94 (189)
T ss_dssp EEEEETTCCCCSSCCTT
T ss_pred EEEECCCCCCCcccccc
Confidence 555443 3444577654
No 7
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=90.20 E-value=0.088 Score=35.86 Aligned_cols=13 Identities=8% Similarity=-0.005 Sum_probs=5.0
Q ss_pred eEEeehhHHHHHH
Q 019150 87 ILLFGIGTGLLIT 99 (345)
Q Consensus 87 iaIIGIavG~~vl 99 (345)
.+|++.+++++++
T Consensus 13 ~~I~~~vv~Gv~l 25 (41)
T 2k9y_A 13 LAVIGGVAVGVVL 25 (41)
T ss_dssp THHHHHHHHHHHH
T ss_pred EEEEeehhHHHHH
Confidence 3343333333333
No 8
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=88.16 E-value=0.093 Score=55.87 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=0.0
Q ss_pred CCCccceEEeehhHHHHHHHHHHHH
Q 019150 81 GKHSNLILLFGIGTGLLITAIISVL 105 (345)
Q Consensus 81 kk~lS~iaIIGIavG~~vllLL~vl 105 (345)
.-.+++.+|+||.+|.++|++++++
T Consensus 699 ~~~l~~~aii~il~~~~~ll~~~ll 723 (880)
T 1q55_A 699 VGGFDLPIILVILGSVLALLILFLL 723 (880)
T ss_dssp -------------------------
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888887777665544443
No 9
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=83.31 E-value=0.94 Score=35.25 Aligned_cols=27 Identities=26% Similarity=0.218 Sum_probs=12.7
Q ss_pred hhHHHHH--HHHHHHHHhhheeccccCCC
Q 019150 92 IGTGLLI--TAIISVLIICSCAFRRRNSK 118 (345)
Q Consensus 92 IavG~~v--llLL~vlilcLC~~rRkkkK 118 (345)
|++|+++ +++.++.++|..++|+++++
T Consensus 12 ivlGg~~~lll~~glcI~ccvkcrhRrrq 40 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIFFSVRSRHRRRQ 40 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCSSS
T ss_pred HHHhHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3445444 55555555544444444433
No 10
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=81.95 E-value=0.39 Score=32.32 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=16.2
Q ss_pred CccceEEeehhHHHHHHHHHHH
Q 019150 83 HSNLILLFGIGTGLLITAIISV 104 (345)
Q Consensus 83 ~lS~iaIIGIavG~~vllLL~v 104 (345)
.++..+|+||++|.++..+++.
T Consensus 3 ~L~~gaIaGIVvgdi~~t~~i~ 24 (33)
T 2l34_A 3 TVSPGVLAGIVVGDLVLTVLIA 24 (33)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHH
T ss_pred ccCcceEEeEeHHHHHHHHHHH
Confidence 4678899999999887444333
No 11
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=79.05 E-value=0.81 Score=33.95 Aligned_cols=13 Identities=15% Similarity=0.020 Sum_probs=5.5
Q ss_pred ceEEeehhHHHHH
Q 019150 86 LILLFGIGTGLLI 98 (345)
Q Consensus 86 ~iaIIGIavG~~v 98 (345)
...|+..++|+++
T Consensus 12 ~wiIi~svl~GLl 24 (54)
T 2knc_A 12 IWWVLVGVLGGLL 24 (54)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3444434444444
No 12
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=70.55 E-value=1.5 Score=32.57 Aligned_cols=11 Identities=9% Similarity=0.051 Sum_probs=4.2
Q ss_pred EEeehhHHHHH
Q 019150 88 LLFGIGTGLLI 98 (345)
Q Consensus 88 aIIGIavG~~v 98 (345)
.|++-++|+++
T Consensus 11 iIi~svl~GLL 21 (54)
T 2l8s_A 11 VILLSAFAGLL 21 (54)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333344443
No 13
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=71.34 E-value=1.1 Score=32.11 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=19.7
Q ss_pred cceEEeehhHHHHHHHHHHHHHhhheec
Q 019150 85 NLILLFGIGTGLLITAIISVLIICSCAF 112 (345)
Q Consensus 85 S~iaIIGIavG~~vllLL~vlilcLC~~ 112 (345)
|+.+++|+.++++.+..++++-+++.++
T Consensus 15 srga~iGL~v~gVai~~vIVvsl~mlRr 42 (43)
T 2llm_A 15 NKGAIIGLMVGGVVIATVIVITLVMLKK 42 (43)
Confidence 6778888888877766666655555543
No 14
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=57.95 E-value=0.7 Score=31.65 Aligned_cols=7 Identities=14% Similarity=0.335 Sum_probs=3.6
Q ss_pred EeehhHH
Q 019150 89 LFGIGTG 95 (345)
Q Consensus 89 IIGIavG 95 (345)
|++.++|
T Consensus 10 IaagVvg 16 (35)
T 1iij_A 10 IIATVVG 16 (35)
T ss_dssp HHHHHHH
T ss_pred eHHHHHH
Confidence 4444555
No 15
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=57.73 E-value=4.9 Score=28.28 Aligned_cols=13 Identities=15% Similarity=0.020 Sum_probs=5.2
Q ss_pred ceEEeehhHHHHH
Q 019150 86 LILLFGIGTGLLI 98 (345)
Q Consensus 86 ~iaIIGIavG~~v 98 (345)
...|+.-++|+++
T Consensus 10 ~wiIi~s~l~GLl 22 (42)
T 2k1a_A 10 IWWVLVGVLGGLL 22 (42)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3344333344444
No 16
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=56.20 E-value=2.4 Score=39.48 Aligned_cols=9 Identities=11% Similarity=0.372 Sum_probs=5.7
Q ss_pred EEEEEecCC
Q 019150 40 LLNFTWFEP 48 (345)
Q Consensus 40 vinvt~f~P 48 (345)
-|.|+|++-
T Consensus 214 ~i~v~W~~~ 222 (315)
T 1cd1_A 214 PVWVMWMRG 222 (315)
T ss_dssp CEEEEEEET
T ss_pred CcEEEEEEc
Confidence 467777654
No 17
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=52.42 E-value=6.9 Score=26.28 Aligned_cols=19 Identities=5% Similarity=0.025 Sum_probs=12.0
Q ss_pred ceEEeehhHHHHHHHHHHH
Q 019150 86 LILLFGIGTGLLITAIISV 104 (345)
Q Consensus 86 ~iaIIGIavG~~vllLL~v 104 (345)
.--+.+|++|.+..+++++
T Consensus 9 ~~~~~~I~~~vv~Gv~ll~ 27 (41)
T 2k9y_A 9 GSGNLAVIGGVAVGVVLLL 27 (41)
T ss_dssp CCSSTHHHHHHHHHHHHHH
T ss_pred CCceEEEEeehhHHHHHHH
Confidence 3466766666666666655
No 18
>2lp1_A C99; alzheimer'S D membrane protein, transmembrane Pro; NMR {Homo sapiens}
Probab=55.86 E-value=3.3 Score=35.21 Aligned_cols=27 Identities=19% Similarity=0.253 Sum_probs=18.7
Q ss_pred cceEEeehhHHHHHHHHHHHHHhhhee
Q 019150 85 NLILLFGIGTGLLITAIISVLIICSCA 111 (345)
Q Consensus 85 S~iaIIGIavG~~vllLL~vlilcLC~ 111 (345)
+..+++|+.+|+++++.++++.+++.+
T Consensus 28 ~~~a~igL~v~~vai~~viVv~l~v~r 54 (122)
T 2lp1_A 28 NKGAIIGLMVGGVVIATVIVITLVMLK 54 (122)
Confidence 556789999888876666555555544
No 19
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain; LCMV, MHC class I, immune escape, immune system; 1.99A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A 1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A 1nez_A*
Probab=49.57 E-value=3.5 Score=39.21 Aligned_cols=15 Identities=7% Similarity=0.018 Sum_probs=0.0
Q ss_pred cceEEeehhHHHHHH
Q 019150 85 NLILLFGIGTGLLIT 99 (345)
Q Consensus 85 S~iaIIGIavG~~vl 99 (345)
+.+.||||++|.+++
T Consensus 279 ~~~~~~~i~~~~~~l 293 (348)
T 1s7q_A 279 STVSNMATVAVLVVL 293 (348)
T ss_dssp ---------------
T ss_pred CcccEEEEEeehhhH
Confidence 456678888886553
No 20
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=49.24 E-value=8.8 Score=27.37 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHhhheeccccCCCC
Q 019150 92 IGTGLLITAIISVLIICSCAFRRRNSKA 119 (345)
Q Consensus 92 IavG~~vllLL~vlilcLC~~rRkkkK~ 119 (345)
|++|.+-+++++++.+.+..+.|||++.
T Consensus 14 Ia~~vVGvll~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 14 IISAVVGILLVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred hHHHHHHHHHHHHHHHHHHhheehhhhh
Confidence 3334444666666677777887776654
No 21
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=42.98 E-value=11 Score=29.18 Aligned_cols=8 Identities=38% Similarity=0.156 Sum_probs=3.4
Q ss_pred eehhHHHH
Q 019150 90 FGIGTGLL 97 (345)
Q Consensus 90 IGIavG~~ 97 (345)
.|++.+++
T Consensus 20 gGLifA~v 27 (67)
T 2jp3_A 20 GGLIFGGL 27 (67)
T ss_dssp HHHHHHHH
T ss_pred cchhhHHH
Confidence 34444444
No 22
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=42.69 E-value=18 Score=26.67 Aligned_cols=14 Identities=0% Similarity=-0.128 Sum_probs=7.0
Q ss_pred hhHHHHH-HHHHHHH
Q 019150 92 IGTGLLI-TAIISVL 105 (345)
Q Consensus 92 IavG~~v-llLL~vl 105 (345)
|++++++ .++++.+
T Consensus 14 iIi~svl~GLllL~l 28 (54)
T 2knc_A 14 WVLVGVLGGLLLLTI 28 (54)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 4444444 5555544
No 23
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=40.22 E-value=9.5 Score=30.01 Aligned_cols=8 Identities=13% Similarity=0.256 Sum_probs=3.3
Q ss_pred eehhHHHH
Q 019150 90 FGIGTGLL 97 (345)
Q Consensus 90 IGIavG~~ 97 (345)
.|++.+++
T Consensus 22 gGLifA~v 29 (74)
T 2zxe_G 22 VGLIVAAV 29 (74)
T ss_dssp HHHHHHHH
T ss_pred ccchhHHH
Confidence 34444444
No 24
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=38.05 E-value=25 Score=26.01 Aligned_cols=14 Identities=7% Similarity=-0.059 Sum_probs=7.0
Q ss_pred hhHHHHH-HHHHHHH
Q 019150 92 IGTGLLI-TAIISVL 105 (345)
Q Consensus 92 IavG~~v-llLL~vl 105 (345)
|++++++ .++++.+
T Consensus 11 iIi~svl~GLLLL~L 25 (54)
T 2l8s_A 11 VILLSAFAGLLLLML 25 (54)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 4455555 5555443
No 25
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=36.07 E-value=21 Score=25.30 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=14.6
Q ss_pred eehhHHHHHHHHHHHHHhh-heeccccCCC
Q 019150 90 FGIGTGLLITAIISVLIIC-SCAFRRRNSK 118 (345)
Q Consensus 90 IGIavG~~vllLL~vlilc-LC~~rRkkkK 118 (345)
-+|++|.+.-+++++++.. +..+.|+|++
T Consensus 11 ~~IA~gVVgGv~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 11 PSIATGMVGALLLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp SSSTHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ceEEeehhHHHHHHHHHHHHHHHHhhhhHh
Confidence 4555555545665554443 3455554444
No 26
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=34.90 E-value=8.1 Score=41.15 Aligned_cols=12 Identities=50% Similarity=1.030 Sum_probs=0.0
Q ss_pred CCccccceeeee
Q 019150 306 GDRFGHLVDVYA 317 (345)
Q Consensus 306 ~d~~~~~~d~y~ 317 (345)
|-||-+|-|+|.
T Consensus 863 gprF~~LA~~~~ 874 (880)
T 1q55_A 863 GSRFRKLADMYG 874 (880)
T ss_dssp ------------
T ss_pred chhhHHHHHHhC
Confidence 446777777764
No 27
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=33.27 E-value=20 Score=27.98 Aligned_cols=10 Identities=10% Similarity=0.391 Sum_probs=4.6
Q ss_pred eeccccCCCC
Q 019150 110 CAFRRRNSKA 119 (345)
Q Consensus 110 C~~rRkkkK~ 119 (345)
|+|+.++++.
T Consensus 40 ckCk~~qk~r 49 (72)
T 2jo1_A 40 CRCKFNQQQR 49 (72)
T ss_dssp HHHHHCTTTS
T ss_pred cccCCCCCCC
Confidence 5554444443
No 28
>1q2j_A MU-conotoxin SMIIIA; HET: PCA; NMR {Synthetic} SCOP: j.30.1.1 PDB: 2yen_A*
Probab=32.76 E-value=26 Score=22.51 Aligned_cols=19 Identities=32% Similarity=0.812 Sum_probs=16.9
Q ss_pred CCCCCCCCcccccccCCce
Q 019150 258 GGCKEGIGSCTSKTCKGHE 276 (345)
Q Consensus 258 ggc~~~~~~c~~~~c~~~~ 276 (345)
++|=+.+.-|.++-|++|-
T Consensus 1 ~~CC~~pngCs~rWCrdha 19 (26)
T 1q2j_A 1 ERCCNGRRGCSSRWCRDHS 19 (26)
T ss_dssp CCSCSSSSCCCSSSSSSSS
T ss_pred CCccCCCCcccchhhcccc
Confidence 5788999999999999984
No 29
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=27.84 E-value=34 Score=26.90 Aligned_cols=17 Identities=18% Similarity=0.460 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhhhe
Q 019150 94 TGLLITAIISVLIICSC 110 (345)
Q Consensus 94 vG~~vllLL~vlilcLC 110 (345)
+|.++++++.++++.+|
T Consensus 74 i~~iv~~il~ii~~~~~ 90 (91)
T 3hd7_A 74 LGVICAIILIIIIVYFS 90 (91)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44444444555455555
No 30
>2cqw_A Sushi domain containing 2; somatomedin_B-like domain, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=27.83 E-value=8.9 Score=30.79 Aligned_cols=16 Identities=31% Similarity=0.929 Sum_probs=13.5
Q ss_pred ceEEEEEEecCCCCCC
Q 019150 37 DYKLLNFTWFEPPAPS 52 (345)
Q Consensus 37 dY~vinvt~f~P~~pS 52 (345)
|+.|+|++||.|.-|+
T Consensus 67 df~v~~~~~~~~~~~~ 82 (84)
T 2cqw_A 67 DFVVQHLKWTDPSGPS 82 (84)
T ss_dssp CCCCCCCCCCCCCCCC
T ss_pred eeEEeeecccCCCCCC
Confidence 7899999999887664
No 31
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=26.71 E-value=38 Score=23.98 Aligned_cols=29 Identities=24% Similarity=0.256 Sum_probs=14.7
Q ss_pred ehhHHHHHHHHHHHHHhh-heeccccCCCC
Q 019150 91 GIGTGLLITAIISVLIIC-SCAFRRRNSKA 119 (345)
Q Consensus 91 GIavG~~vllLL~vlilc-LC~~rRkkkK~ 119 (345)
+|++|.+.-+++++++.. ...+.|+|++.
T Consensus 11 aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 11 LIAAGVIGGLFILVIVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred eEEEeehHHHHHHHHHHHHHHHHhhhhhhh
Confidence 344444434555554433 44666666654
No 32
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=25.86 E-value=34 Score=28.31 Aligned_cols=17 Identities=18% Similarity=0.460 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHhhhe
Q 019150 94 TGLLITAIISVLIICSC 110 (345)
Q Consensus 94 vG~~vllLL~vlilcLC 110 (345)
+|.+++++|+++++..|
T Consensus 102 i~~iv~iii~iIi~~~c 118 (119)
T 2kog_A 102 LGVICAIILIIIIVYFS 118 (119)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhee
Confidence 44444444444455454
No 33
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=24.67 E-value=15 Score=25.70 Aligned_cols=6 Identities=0% Similarity=0.744 Sum_probs=3.0
Q ss_pred cceEEe
Q 019150 85 NLILLF 90 (345)
Q Consensus 85 S~iaII 90 (345)
+..+|+
T Consensus 8 n~~~Iv 13 (43)
T 2k9j_B 8 DILVVL 13 (43)
T ss_dssp HHHHHH
T ss_pred CEeehH
Confidence 355554
No 34
>3ug3_A Alpha-L-arabinofuranosidase; TIM barrel, hydrolase; 1.80A {Thermotoga maritima} PDB: 3ug4_A* 3ug5_A* 3s2c_A 4atw_A
Probab=22.66 E-value=24 Score=35.82 Aligned_cols=49 Identities=35% Similarity=0.781 Sum_probs=31.0
Q ss_pred ccccCccccCC-CCCCCCCCCCCC-------------cc--ccceeeeecCCcccccCCCCCCCCCccccc
Q 019150 285 GSAIPGRLYGG-NPVDNSEGNGGD-------------RF--GHLVDVYAWTPHCRYLDGMGPSGIKLNHFR 339 (345)
Q Consensus 285 ~~~~~g~~yg~-n~~d~~~g~g~d-------------~~--~~~~d~y~~~p~cr~~d~~~p~~~~~~~~~ 339 (345)
|.+|=|..||. .++.|.+|--.| || |..+|.|-|. |||||...-....+
T Consensus 49 gr~iy~gi~~~~s~~~~~~G~R~dv~~alk~l~~~~lR~PGG~~~~~y~W~------d~iGP~~~Rp~~~~ 113 (504)
T 3ug3_A 49 GRCIYGGIYEEGSPLSDERGFRKDVLEAVKRIKVPNLRWPGGNFVSNYHWE------DGIGPKDQRPVRFD 113 (504)
T ss_dssp TTSTBTTTBCTTCTTBCTTSBBHHHHHHHHHTTCSEEEESCSGGGGGCCGG------GGCSSGGGSCCEEE
T ss_pred hccccccccCCCCCCccccCcHHHHHHHHHhcCCCeEEeCCCcccCcchhc------cCcCChHHCCCCcc
Confidence 34444445542 456677765444 77 8899998774 89999875444443
No 35
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=21.69 E-value=22 Score=27.62 Aligned_cols=11 Identities=0% Similarity=-0.136 Sum_probs=6.1
Q ss_pred EEeehhHHHHH
Q 019150 88 LLFGIGTGLLI 98 (345)
Q Consensus 88 aIIGIavG~~v 98 (345)
-+.+|++|++.
T Consensus 9 n~~~Iv~gvi~ 19 (79)
T 2knc_B 9 DILVVLLSVMG 19 (79)
T ss_dssp CSHHHHHHHHH
T ss_pred CchhhHHHHHH
Confidence 45566666554
Done!