Query 019151
Match_columns 345
No_of_seqs 242 out of 1079
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 11:41:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019151.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019151hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmn_A Homeobox protein TGIF2L 99.7 1.9E-18 6.4E-23 136.7 7.1 64 258-321 7-70 (83)
2 3k2a_A Homeobox protein MEIS2; 99.7 1.1E-17 3.8E-22 127.5 6.8 61 262-322 2-62 (67)
3 1x2n_A Homeobox protein pknox1 99.7 1.6E-17 5.6E-22 127.5 7.5 65 258-322 7-71 (73)
4 2lk2_A Homeobox protein TGIF1; 99.7 1.1E-17 3.6E-22 135.2 4.7 58 263-320 10-67 (89)
5 1du6_A PBX1, homeobox protein 99.7 4.5E-17 1.5E-21 122.0 7.1 62 258-319 3-64 (64)
6 1le8_B Mating-type protein alp 99.7 1E-16 3.5E-21 126.5 8.5 64 259-322 3-66 (83)
7 1k61_A Mating-type protein alp 99.7 9.4E-17 3.2E-21 118.8 7.5 59 261-319 1-59 (60)
8 1puf_B PRE-B-cell leukemia tra 99.7 8.4E-17 2.9E-21 123.6 7.3 65 259-323 2-66 (73)
9 1b72_B Protein (PBX1); homeodo 99.7 4.5E-17 1.5E-21 128.9 4.5 63 259-321 2-64 (87)
10 1mnm_C Protein (MAT alpha-2 tr 99.6 2.6E-16 8.9E-21 124.9 7.4 61 258-318 27-87 (87)
11 2ecc_A Homeobox and leucine zi 99.5 7.5E-15 2.6E-19 115.3 6.9 58 260-320 5-62 (76)
12 1akh_A Protein (mating-type pr 99.5 1.2E-14 4E-19 107.6 6.5 57 258-317 5-61 (61)
13 2cra_A Homeobox protein HOX-B1 99.5 2.4E-14 8.3E-19 109.1 7.9 63 258-323 7-69 (70)
14 2dmu_A Homeobox protein goosec 99.5 2.2E-14 7.5E-19 109.2 7.2 63 258-323 7-69 (70)
15 2djn_A Homeobox protein DLX-5; 99.5 2.4E-14 8.2E-19 109.1 6.9 63 258-323 7-69 (70)
16 2hdd_A Protein (engrailed home 99.5 2.9E-14 1E-18 105.8 6.9 60 257-319 2-61 (61)
17 2e1o_A Homeobox protein PRH; D 99.5 2.6E-14 9E-19 108.9 6.7 63 258-323 7-69 (70)
18 1bw5_A ISL-1HD, insulin gene e 99.5 4.6E-14 1.6E-18 106.2 7.7 60 258-320 3-62 (66)
19 2da2_A Alpha-fetoprotein enhan 99.5 4.6E-14 1.6E-18 107.2 7.7 63 258-323 7-69 (70)
20 2da3_A Alpha-fetoprotein enhan 99.5 3.8E-14 1.3E-18 110.1 7.0 63 258-323 17-79 (80)
21 2dmt_A Homeobox protein BARH-l 99.5 5.7E-14 1.9E-18 109.8 7.9 63 258-323 17-79 (80)
22 2da4_A Hypothetical protein DK 99.5 1.8E-14 6.2E-19 112.5 4.5 65 258-322 8-73 (80)
23 2da1_A Alpha-fetoprotein enhan 99.5 5.3E-14 1.8E-18 106.9 6.6 62 258-322 7-68 (70)
24 1ig7_A Homeotic protein MSX-1; 99.5 7.7E-14 2.6E-18 102.2 6.6 57 259-318 1-57 (58)
25 2h1k_A IPF-1, pancreatic and d 99.5 9.1E-14 3.1E-18 103.8 6.7 59 258-319 3-61 (63)
26 1jgg_A Segmentation protein EV 99.5 9.8E-14 3.3E-18 102.6 6.7 58 259-319 2-59 (60)
27 1ahd_P Antennapedia protein mu 99.5 6.9E-14 2.4E-18 106.2 5.9 63 258-323 2-64 (68)
28 2k40_A Homeobox expressed in E 99.4 1.1E-13 3.9E-18 104.4 6.8 61 259-322 2-62 (67)
29 2vi6_A Homeobox protein nanog; 99.4 1.5E-13 5.2E-18 102.2 7.1 59 258-319 3-61 (62)
30 2l7z_A Homeobox protein HOX-A1 99.4 2E-13 6.8E-18 105.0 7.8 61 258-321 7-67 (73)
31 3rkq_A Homeobox protein NKX-2. 99.4 1.3E-13 4.6E-18 100.3 6.3 57 258-317 2-58 (58)
32 1ftt_A TTF-1 HD, thyroid trans 99.4 2E-13 6.8E-18 103.6 7.1 62 258-322 2-63 (68)
33 1wh5_A ZF-HD homeobox family p 99.4 1.7E-13 5.7E-18 107.8 6.9 62 258-319 17-79 (80)
34 2dn0_A Zinc fingers and homeob 99.4 2.6E-13 8.9E-18 105.0 7.6 60 260-322 10-69 (76)
35 1fjl_A Paired protein; DNA-bin 99.4 1.7E-13 6E-18 107.1 6.6 60 258-320 18-77 (81)
36 2dmq_A LIM/homeobox protein LH 99.4 1.8E-13 6.1E-18 106.5 6.5 59 258-319 7-65 (80)
37 2dms_A Homeobox protein OTX2; 99.4 3.6E-13 1.2E-17 105.1 7.8 61 258-321 7-67 (80)
38 3a02_A Homeobox protein arista 99.4 4E-13 1.4E-17 99.3 6.6 56 262-320 3-58 (60)
39 1nk2_P Homeobox protein VND; h 99.4 3.6E-13 1.2E-17 104.5 6.5 59 258-319 9-67 (77)
40 1zq3_P PRD-4, homeotic bicoid 99.4 2.8E-13 9.6E-18 102.7 5.8 60 258-320 2-61 (68)
41 1yz8_P Pituitary homeobox 2; D 99.4 1.2E-13 4.1E-18 104.6 3.3 61 258-321 3-63 (68)
42 2da5_A Zinc fingers and homeob 99.4 7E-13 2.4E-17 102.6 7.6 60 260-322 9-68 (75)
43 2kt0_A Nanog, homeobox protein 99.4 7.1E-13 2.4E-17 104.0 7.6 60 258-320 22-81 (84)
44 2cue_A Paired box protein PAX6 99.4 3.3E-13 1.1E-17 105.4 5.6 59 258-319 7-65 (80)
45 1b8i_A Ultrabithorax, protein 99.4 6.5E-13 2.2E-17 104.2 7.1 60 258-320 20-79 (81)
46 2m0c_A Homeobox protein arista 99.4 8.9E-13 3.1E-17 101.0 7.4 61 258-321 9-69 (75)
47 1puf_A HOX-1.7, homeobox prote 99.4 7E-13 2.4E-17 102.8 6.7 59 258-319 13-71 (77)
48 2ly9_A Zinc fingers and homeob 99.4 1.5E-12 5.1E-17 99.9 8.4 63 259-324 7-69 (74)
49 2hi3_A Homeodomain-only protei 99.4 5.4E-13 1.8E-17 102.5 5.9 61 259-321 3-63 (73)
50 3a03_A T-cell leukemia homeobo 99.4 7E-13 2.4E-17 96.9 6.0 54 263-319 2-55 (56)
51 1uhs_A HOP, homeodomain only p 99.4 6.9E-13 2.4E-17 101.5 6.3 60 260-321 3-62 (72)
52 2d5v_A Hepatocyte nuclear fact 99.4 1E-12 3.4E-17 115.2 7.3 62 257-321 96-157 (164)
53 3a01_A Homeodomain-containing 99.3 9.2E-13 3.1E-17 106.0 6.0 61 258-321 17-77 (93)
54 2r5y_A Homeotic protein sex co 99.3 1.3E-12 4.6E-17 103.7 6.5 60 258-320 28-87 (88)
55 2cuf_A FLJ21616 protein; homeo 99.3 7.1E-13 2.4E-17 106.7 4.9 61 258-321 7-82 (95)
56 3d1n_I POU domain, class 6, tr 99.3 1.6E-12 5.5E-17 112.8 6.9 58 258-318 93-150 (151)
57 2ecb_A Zinc fingers and homeob 99.3 3.5E-12 1.2E-16 102.7 8.2 55 262-319 15-69 (89)
58 2dmp_A Zinc fingers and homeob 99.3 3.8E-12 1.3E-16 101.8 8.3 60 262-324 17-76 (89)
59 3nau_A Zinc fingers and homeob 99.3 1.4E-12 4.7E-17 99.9 5.4 52 264-318 10-61 (66)
60 3nar_A ZHX1, zinc fingers and 99.3 2.8E-12 9.6E-17 103.6 7.3 60 258-320 25-84 (96)
61 1b72_A Protein (homeobox prote 99.3 2.1E-12 7.1E-17 104.4 5.9 60 258-320 34-93 (97)
62 1wh7_A ZF-HD homeobox family p 99.3 2.3E-12 8E-17 101.5 5.3 61 258-319 17-79 (80)
63 2e19_A Transcription factor 8; 99.3 6.7E-12 2.3E-16 94.8 7.2 56 262-320 7-62 (64)
64 2cqx_A LAG1 longevity assuranc 99.3 4.2E-12 1.4E-16 98.0 5.5 61 260-323 10-71 (72)
65 1e3o_C Octamer-binding transcr 99.3 6.4E-12 2.2E-16 110.2 7.4 60 258-320 101-160 (160)
66 1wi3_A DNA-binding protein SAT 99.3 1.2E-11 3.9E-16 95.5 7.5 65 257-323 6-70 (71)
67 1x2m_A LAG1 longevity assuranc 99.3 8.2E-12 2.8E-16 95.0 6.6 55 267-323 9-63 (64)
68 2xsd_C POU domain, class 3, tr 99.2 7.8E-12 2.7E-16 110.4 7.0 63 257-322 98-160 (164)
69 1au7_A Protein PIT-1, GHF-1; c 99.2 1.1E-11 3.7E-16 107.4 7.7 59 258-319 87-145 (146)
70 2l9r_A Homeobox protein NKX-3. 99.2 1.8E-11 6.2E-16 94.1 7.3 56 264-322 10-65 (69)
71 1lfb_A Liver transcription fac 99.2 1.4E-11 4.7E-16 100.9 6.3 62 257-321 8-90 (99)
72 2da6_A Hepatocyte nuclear fact 99.2 3.3E-11 1.1E-15 99.5 5.9 60 258-320 6-86 (102)
73 3l1p_A POU domain, class 5, tr 99.1 2E-11 6.8E-16 106.7 4.6 59 258-319 96-154 (155)
74 1mh3_A Maltose binding-A1 home 99.0 2.3E-10 7.8E-15 109.8 5.7 54 261-317 368-421 (421)
75 2h8r_A Hepatocyte nuclear fact 99.0 4.6E-10 1.6E-14 103.9 6.4 57 258-317 142-219 (221)
76 1ic8_A Hepatocyte nuclear fact 99.0 2.7E-10 9.1E-15 103.5 3.9 58 258-318 115-193 (194)
77 2da7_A Zinc finger homeobox pr 98.9 2.6E-09 9E-14 82.6 6.9 48 267-317 14-61 (71)
78 2nzz_A Penetratin conjugated G 96.1 0.00089 3E-08 45.6 -0.2 19 303-321 1-19 (37)
79 2ys9_A Homeobox and leucine zi 95.2 0.013 4.3E-07 45.2 3.1 45 265-312 13-57 (70)
80 2glo_A Brinker CG9653-PA; prot 70.8 6.8 0.00023 27.5 4.8 48 262-313 3-50 (59)
81 1hlv_A CENP-B, major centromer 67.8 13 0.00044 29.5 6.5 50 261-316 4-53 (131)
82 1tc3_C Protein (TC3 transposas 59.2 21 0.00073 22.4 5.3 42 263-312 4-45 (51)
83 2elh_A CG11849-PA, LD40883P; s 58.7 32 0.0011 25.8 6.9 45 261-313 19-63 (87)
84 2o8x_A Probable RNA polymerase 55.2 9.1 0.00031 26.8 3.0 50 263-320 14-63 (70)
85 3hug_A RNA polymerase sigma fa 54.1 8 0.00027 29.3 2.7 47 264-318 37-83 (92)
86 2jqq_A Conserved oligomeric go 47.8 21 0.00071 32.3 4.7 38 140-179 83-120 (204)
87 2p7v_B Sigma-70, RNA polymeras 45.2 18 0.00062 25.6 3.3 54 264-321 5-58 (68)
88 3mzy_A RNA polymerase sigma-H 42.9 14 0.00048 29.4 2.7 47 264-319 109-155 (164)
89 1ku3_A Sigma factor SIGA; heli 42.6 20 0.00067 25.8 3.2 54 263-320 9-63 (73)
90 1tty_A Sigma-A, RNA polymerase 41.9 22 0.00075 26.7 3.5 53 264-320 18-70 (87)
91 2rnj_A Response regulator prot 40.9 46 0.0016 24.9 5.2 49 264-321 29-77 (91)
92 3swk_A Vimentin; cytoskeleton, 40.1 83 0.0028 24.3 6.6 48 131-178 20-76 (86)
93 3c57_A Two component transcrip 38.9 34 0.0012 26.1 4.2 51 264-323 27-77 (95)
94 2k27_A Paired box protein PAX- 35.6 1.2E+02 0.0042 24.6 7.5 61 262-325 81-148 (159)
95 1s7o_A Hypothetical UPF0122 pr 34.8 27 0.00093 28.0 3.2 47 264-318 22-68 (113)
96 3lsg_A Two-component response 34.7 64 0.0022 24.3 5.2 41 269-312 3-43 (103)
97 1or7_A Sigma-24, RNA polymeras 34.5 22 0.00075 29.4 2.7 48 264-319 140-187 (194)
98 3bd1_A CRO protein; transcript 34.3 22 0.00077 25.7 2.4 23 291-313 14-36 (79)
99 2r1j_L Repressor protein C2; p 34.1 21 0.00071 24.3 2.1 23 291-313 21-43 (68)
100 2xi8_A Putative transcription 34.0 21 0.00071 24.2 2.0 22 292-313 18-39 (66)
101 1je8_A Nitrate/nitrite respons 33.8 30 0.001 25.7 3.1 48 264-320 21-68 (82)
102 1fse_A GERE; helix-turn-helix 33.3 38 0.0013 23.7 3.5 50 262-320 9-58 (74)
103 1rp3_A RNA polymerase sigma fa 33.2 24 0.00082 30.0 2.8 47 264-318 187-233 (239)
104 1zug_A Phage 434 CRO protein; 32.8 22 0.00074 24.5 2.0 23 291-313 19-41 (71)
105 2q1z_A RPOE, ECF SIGE; ECF sig 32.2 15 0.00052 30.2 1.2 47 264-318 135-181 (184)
106 1jko_C HIN recombinase, DNA-in 32.0 36 0.0012 21.8 2.9 41 263-311 4-44 (52)
107 2rn7_A IS629 ORFA; helix, all 31.9 90 0.0031 23.8 5.7 52 262-314 4-56 (108)
108 3bs3_A Putative DNA-binding pr 30.1 27 0.00091 24.5 2.1 22 292-313 27-48 (76)
109 1adr_A P22 C2 repressor; trans 29.9 26 0.0009 24.4 2.1 23 291-313 21-43 (76)
110 2b5a_A C.BCLI; helix-turn-heli 28.9 28 0.00097 24.4 2.1 22 292-313 27-48 (77)
111 2jn6_A Protein CGL2762, transp 28.8 72 0.0025 23.9 4.6 45 263-313 4-48 (97)
112 1p4w_A RCSB; solution structur 28.5 85 0.0029 24.4 5.0 50 262-320 32-81 (99)
113 1r69_A Repressor protein CI; g 28.5 29 0.00099 23.7 2.0 23 291-313 17-39 (69)
114 2jpc_A SSRB; DNA binding prote 28.0 45 0.0015 22.6 3.0 29 292-320 17-45 (61)
115 1xsv_A Hypothetical UPF0122 pr 27.9 31 0.0011 27.5 2.4 47 264-318 25-71 (113)
116 2wiu_B HTH-type transcriptiona 27.6 39 0.0013 24.4 2.7 22 292-313 29-50 (88)
117 3b7h_A Prophage LP1 protein 11 27.4 31 0.0011 24.2 2.1 22 292-313 24-45 (78)
118 1iuf_A Centromere ABP1 protein 27.1 71 0.0024 26.2 4.6 53 259-314 6-62 (144)
119 1x3u_A Transcriptional regulat 26.5 49 0.0017 23.6 3.1 47 265-320 17-63 (79)
120 3omt_A Uncharacterized protein 26.4 30 0.001 24.3 1.8 21 292-312 25-45 (73)
121 1y7y_A C.AHDI; helix-turn-heli 26.3 34 0.0012 23.7 2.1 21 292-312 30-50 (74)
122 1xc0_A Pardaxin P-4, PA4; BEND 25.6 65 0.0022 20.6 3.0 22 73-94 5-26 (33)
123 3kz3_A Repressor protein CI; f 25.3 31 0.0011 24.9 1.8 22 292-313 29-50 (80)
124 2a6c_A Helix-turn-helix motif; 25.3 38 0.0013 24.7 2.3 22 292-313 35-56 (83)
125 1rzs_A Antirepressor, regulato 24.7 35 0.0012 24.0 1.9 18 292-309 14-31 (61)
126 1u78_A TC3 transposase, transp 24.5 1.4E+02 0.0048 23.1 5.7 52 262-320 58-112 (141)
127 2kpj_A SOS-response transcript 22.6 42 0.0014 25.0 2.1 22 292-313 26-47 (94)
128 2ict_A Antitoxin HIGA; helix-t 22.1 44 0.0015 24.7 2.2 23 291-313 24-46 (94)
129 2ef8_A C.ECOT38IS, putative tr 22.1 45 0.0015 23.7 2.1 22 292-313 27-48 (84)
130 2k9q_A Uncharacterized protein 22.0 41 0.0014 23.9 1.9 22 292-313 19-40 (77)
131 3clo_A Transcriptional regulat 21.3 80 0.0027 28.1 4.0 50 263-321 196-245 (258)
132 3ol1_A Vimentin; structural ge 20.8 2.6E+02 0.0088 22.6 6.7 47 132-178 41-96 (119)
133 1e8o_B SRP14, signal recogniti 20.4 47 0.0016 26.9 2.1 19 130-148 71-89 (106)
134 1neq_A DNA-binding protein NER 20.2 50 0.0017 24.4 2.0 19 292-310 26-44 (74)
135 1lmb_3 Protein (lambda repress 20.1 47 0.0016 24.3 1.9 21 292-312 34-54 (92)
136 3f6w_A XRE-family like protein 20.0 48 0.0016 23.7 1.9 22 292-313 31-52 (83)
No 1
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.74 E-value=1.9e-18 Score=136.73 Aligned_cols=64 Identities=41% Similarity=0.731 Sum_probs=59.9
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~ 321 (345)
++|+++.|++.++.+|+.||..|..+|||+.++|..||..|||+..||.+||+|+|+|.|+...
T Consensus 7 ~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~ 70 (83)
T 2dmn_A 7 GKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDML 70 (83)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHH
Confidence 5667789999999999999999999999999999999999999999999999999999987554
No 2
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=1.1e-17 Score=127.45 Aligned_cols=61 Identities=43% Similarity=0.830 Sum_probs=54.1
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCC
Q 019151 262 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 322 (345)
Q Consensus 262 r~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~s 322 (345)
.|+||++++.+|+.||..|..+|||+..+|..||..|||+..||.+||+|+|+|.|++...
T Consensus 2 ~g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 2 SGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp ----CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred CCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999988654
No 3
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=1.6e-17 Score=127.53 Aligned_cols=65 Identities=42% Similarity=0.857 Sum_probs=60.8
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 322 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~s 322 (345)
.+|+++.|++.++.+|+.||..|..+|||+..++..||..|||+..||.+||+|+|+|.|++...
T Consensus 7 ~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 7 GKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 45667899999999999999999999999999999999999999999999999999999988754
No 4
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-17 Score=135.18 Aligned_cols=58 Identities=38% Similarity=0.656 Sum_probs=55.2
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019151 263 GKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 263 ~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~ 320 (345)
.-||++++.+|++||.+|..+|||++++|..||..|||+.+||+|||+|+|+|.|++.
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~ 67 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDM 67 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHH
Confidence 4699999999999999999999999999999999999999999999999999998754
No 5
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.68 E-value=4.5e-17 Score=121.97 Aligned_cols=62 Identities=31% Similarity=0.588 Sum_probs=58.2
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~ 319 (345)
.+++++.|++.+..+|+.||..|..+|||+..++..||..+||+..||.+||+|+|.|.|++
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 35677899999999999999999999999999999999999999999999999999999874
No 6
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.67 E-value=1e-16 Score=126.45 Aligned_cols=64 Identities=20% Similarity=0.436 Sum_probs=58.1
Q ss_pred hcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCC
Q 019151 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 322 (345)
Q Consensus 259 krkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~s 322 (345)
.+++..|+..+..+|+.||..|..+|||+..++..||..|||+..||.+||+|+|+|.|+...+
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~ 66 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIA 66 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccC
Confidence 3445569999999999999999999999999999999999999999999999999999987654
No 7
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.67 E-value=9.4e-17 Score=118.77 Aligned_cols=59 Identities=24% Similarity=0.527 Sum_probs=56.2
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019151 261 RAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 261 kr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~ 319 (345)
|+++|++++..+|+.||..|..+|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 46789999999999999999999999999999999999999999999999999998874
No 8
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.67 E-value=8.4e-17 Score=123.56 Aligned_cols=65 Identities=31% Similarity=0.580 Sum_probs=60.5
Q ss_pred hcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCC
Q 019151 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (345)
Q Consensus 259 krkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~s~ 323 (345)
+|+++.|++.+..+|+.||..|..+|||+..++..||..+||+..||.+||+|+|.|.|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 56778999999999999999999999999999999999999999999999999999999876643
No 9
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.66 E-value=4.5e-17 Score=128.89 Aligned_cols=63 Identities=32% Similarity=0.613 Sum_probs=58.9
Q ss_pred hcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 019151 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (345)
Q Consensus 259 krkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~ 321 (345)
+|+++.|++.++.+|+.||..|..+|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 64 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccc
Confidence 567889999999999999999999999999999999999999999999999999999998654
No 10
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.64 E-value=2.6e-16 Score=124.91 Aligned_cols=61 Identities=23% Similarity=0.516 Sum_probs=57.0
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 318 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk 318 (345)
++|++..|+++++.+|+.||..|+.+|||+..++..||..+||+..||.+||+|+|+|.|.
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 4556778999999999999999999999999999999999999999999999999999763
No 11
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=7.5e-15 Score=115.30 Aligned_cols=58 Identities=26% Similarity=0.421 Sum_probs=54.2
Q ss_pred cCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019151 260 RRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 260 rkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~ 320 (345)
.++++|+++++.+|+.||.. +|||+..++..||..|||+..||.+||+|+|.|.|+..
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~---~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQ---CQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHH
Confidence 45778999999999999999 69999999999999999999999999999999988754
No 12
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.53 E-value=1.2e-14 Score=107.65 Aligned_cols=57 Identities=18% Similarity=0.352 Sum_probs=47.8
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcc
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 317 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~k 317 (345)
++|++..|+..+..+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.|
T Consensus 5 ~rr~Rt~ft~~q~~~Le~~f~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 5 SPKGKSSISPQARAFLEEVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp -------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 4556779999999999999999 69999999999999999999999999999999864
No 13
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=2.4e-14 Score=109.08 Aligned_cols=63 Identities=21% Similarity=0.349 Sum_probs=58.4
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~s~ 323 (345)
.+|++..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..+++
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 69 (70)
T 2cra_A 7 GRKKRIPYSKGQLRELEREYAA---NKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGPSS 69 (70)
T ss_dssp CCCSCCCSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCTTC
T ss_pred CCCCCCcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCCCC
Confidence 4566789999999999999998 79999999999999999999999999999999999987754
No 14
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2.2e-14 Score=109.20 Aligned_cols=63 Identities=21% Similarity=0.413 Sum_probs=58.4
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~s~ 323 (345)
.+|++..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++..+++
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~~~ 69 (70)
T 2dmu_A 7 GRRHRTIFTDEQLEALENLFQE---TKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGPSS 69 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTSTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCCCC
Confidence 4567779999999999999999 79999999999999999999999999999999999887754
No 15
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=2.4e-14 Score=109.10 Aligned_cols=63 Identities=22% Similarity=0.334 Sum_probs=58.3
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~s~ 323 (345)
.+|++..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..+++
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ss 69 (70)
T 2djn_A 7 GRKPRTIYSSFQLAALQRRFQK---TQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGPSS 69 (70)
T ss_dssp CCCSSCSSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCCCC
Confidence 4566779999999999999988 79999999999999999999999999999999999988764
No 16
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.50 E-value=2.9e-14 Score=105.76 Aligned_cols=60 Identities=28% Similarity=0.371 Sum_probs=52.7
Q ss_pred hhhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019151 257 LRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 257 ~kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~ 319 (345)
.++|++..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREFNE---NRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKKS 61 (61)
T ss_dssp -----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHhhhhccccccC
Confidence 35677889999999999999998 7999999999999999999999999999999998863
No 17
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.50 E-value=2.6e-14 Score=108.89 Aligned_cols=63 Identities=25% Similarity=0.392 Sum_probs=58.2
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~s~ 323 (345)
.++++..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++..+++
T Consensus 7 ~~r~R~~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~~s 69 (70)
T 2e1o_A 7 GKGGQVRFSNDQTIELEKKFET---QKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGPSS 69 (70)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCCCC
Confidence 4566789999999999999998 79999999999999999999999999999999999887754
No 18
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.50 E-value=4.6e-14 Score=106.24 Aligned_cols=60 Identities=27% Similarity=0.381 Sum_probs=56.1
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~ 320 (345)
++|++..|+.++...|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAA---NPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 4567789999999999999999 79999999999999999999999999999999998765
No 19
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.49 E-value=4.6e-14 Score=107.25 Aligned_cols=63 Identities=21% Similarity=0.410 Sum_probs=58.0
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~s~ 323 (345)
.+|++..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++...+.
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (70)
T 2da2_A 7 GRSSRTRFTDYQLRVLQDFFDA---NAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPSS 69 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhccccC
Confidence 4566779999999999999999 79999999999999999999999999999999999877654
No 20
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.49 E-value=3.8e-14 Score=110.06 Aligned_cols=63 Identities=27% Similarity=0.427 Sum_probs=58.3
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~s~ 323 (345)
++|++..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...++
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~f~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~s 79 (80)
T 2da3_A 17 DKRLRTTITPEQLEILYQKYLL---DSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGPSS 79 (80)
T ss_dssp CTTCCSSCCTTTHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhccCC
Confidence 4566789999999999999999 69999999999999999999999999999999999987654
No 21
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=5.7e-14 Score=109.76 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=58.3
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~s~ 323 (345)
.+|++..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..+++
T Consensus 17 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ss 79 (80)
T 2dmt_A 17 GRRSRTVFTELQLMGLEKRFEK---QKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGPSS 79 (80)
T ss_dssp CCCSCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccCCC
Confidence 4566778999999999999999 79999999999999999999999999999999999988764
No 22
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.8e-14 Score=112.47 Aligned_cols=65 Identities=12% Similarity=0.223 Sum_probs=57.6
Q ss_pred hhcCCCCCChhHHHHHHHHHHHc-cCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSH-AKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 322 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h-~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~s 322 (345)
++|++..|+.++..+|+.||..+ ..+|||+..++..||..+||+..||.+||+|+|.|.++....
T Consensus 8 ~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~~~ 73 (80)
T 2da4_A 8 ALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGIE 73 (80)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhccCC
Confidence 45667789999999999999985 445999999999999999999999999999999999875543
No 23
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.47 E-value=5.3e-14 Score=106.91 Aligned_cols=62 Identities=26% Similarity=0.467 Sum_probs=57.2
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 322 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~s 322 (345)
.+|++..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++....
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da1_A 7 GKRPRTRITDDQLRVLRQYFDI---NNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGPS 68 (70)
T ss_dssp CCSCSCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhccc
Confidence 4566779999999999999998 7999999999999999999999999999999999987654
No 24
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.46 E-value=7.7e-14 Score=102.24 Aligned_cols=57 Identities=16% Similarity=0.258 Sum_probs=53.4
Q ss_pred hcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019151 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 318 (345)
Q Consensus 259 krkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk 318 (345)
+|++..|+.++...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQ---KQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 356789999999999999998 799999999999999999999999999999999875
No 25
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.46 E-value=9.1e-14 Score=103.84 Aligned_cols=59 Identities=20% Similarity=0.228 Sum_probs=54.1
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~ 319 (345)
.+|++..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLF---NKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 4667789999999999999998 7999999999999999999999999999999998864
No 26
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.45 E-value=9.8e-14 Score=102.61 Aligned_cols=58 Identities=19% Similarity=0.312 Sum_probs=53.6
Q ss_pred hcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019151 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 259 krkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~ 319 (345)
+|++..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYK---ENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 456789999999999999999 7999999999999999999999999999999998763
No 27
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.45 E-value=6.9e-14 Score=106.23 Aligned_cols=63 Identities=24% Similarity=0.268 Sum_probs=58.0
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~s~ 323 (345)
++|++..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 64 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTK 64 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCcCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcccc
Confidence 5677889999999999999998 79999999999999999999999999999999999876543
No 28
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.45 E-value=1.1e-13 Score=104.37 Aligned_cols=61 Identities=21% Similarity=0.336 Sum_probs=56.4
Q ss_pred hcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCC
Q 019151 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 322 (345)
Q Consensus 259 krkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~s 322 (345)
+|++..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+....
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRV---NCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 566789999999999999987 7999999999999999999999999999999999887653
No 29
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.44 E-value=1.5e-13 Score=102.18 Aligned_cols=59 Identities=20% Similarity=0.272 Sum_probs=51.8
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~ 319 (345)
++|++..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQK---QKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 4566789999999999999998 7999999999999999999999999999999998863
No 30
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.44 E-value=2e-13 Score=105.04 Aligned_cols=61 Identities=16% Similarity=0.265 Sum_probs=56.6
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~ 321 (345)
.+|++..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (73)
T 2l7z_A 7 GRKKRVPYTKVQLKELEREYAT---NKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 67 (73)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHH---TSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCHHHHHHHHHHHhh---CCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhc
Confidence 3566779999999999999999 799999999999999999999999999999999998765
No 31
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.44 E-value=1.3e-13 Score=100.34 Aligned_cols=57 Identities=18% Similarity=0.276 Sum_probs=53.0
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcc
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 317 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~k 317 (345)
++|++..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQ---QRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 4567789999999999999987 79999999999999999999999999999999864
No 32
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.43 E-value=2e-13 Score=103.58 Aligned_cols=62 Identities=18% Similarity=0.265 Sum_probs=57.2
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 322 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~s 322 (345)
++|++..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~ 63 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQ---QKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 63 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCccCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhH
Confidence 4567789999999999999998 7999999999999999999999999999999999986653
No 33
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.43 E-value=1.7e-13 Score=107.83 Aligned_cols=62 Identities=21% Similarity=0.268 Sum_probs=56.7
Q ss_pred hhcCCCCCChhHHHHHHHHHHH-ccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLS-HAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~-h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~ 319 (345)
+||++..|+.++...|+.+|.. ++++|||+..++..||..+||+..||.+||+|+|.+.++.
T Consensus 17 ~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~~ 79 (80)
T 1wh5_A 17 RKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPSS 79 (80)
T ss_dssp SCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSCC
T ss_pred CCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCCC
Confidence 5667789999999999999996 6778999999999999999999999999999999998753
No 34
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.6e-13 Score=105.02 Aligned_cols=60 Identities=22% Similarity=0.359 Sum_probs=55.6
Q ss_pred cCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCC
Q 019151 260 RRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 322 (345)
Q Consensus 260 rkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~s 322 (345)
+.+..|+.++...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+....
T Consensus 10 ~~R~~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~ 69 (76)
T 2dn0_A 10 IYKNKKSHEQLSALKGSFCR---NQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGS 69 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---SSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSS
T ss_pred CCCccCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhccc
Confidence 44678999999999999998 7999999999999999999999999999999999987654
No 35
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.43 E-value=1.7e-13 Score=107.08 Aligned_cols=60 Identities=23% Similarity=0.354 Sum_probs=55.4
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~ 320 (345)
++|++..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 18 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 18 QRRSRTTFSASQLDELERAFER---TQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 4566779999999999999998 79999999999999999999999999999999988754
No 36
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=1.8e-13 Score=106.55 Aligned_cols=59 Identities=24% Similarity=0.377 Sum_probs=55.2
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~ 319 (345)
.+|++..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (80)
T 2dmq_A 7 GKRMRTSFKHHQLRTMKSYFAI---NHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRN 65 (80)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHH
Confidence 4667789999999999999998 7999999999999999999999999999999998874
No 37
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.42 E-value=3.6e-13 Score=105.06 Aligned_cols=61 Identities=16% Similarity=0.307 Sum_probs=56.2
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~ 321 (345)
.+|++..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++...
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 7 GRRERTTFTRAQLDVLEALFAK---TRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 4566779999999999999999 799999999999999999999999999999999887654
No 38
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.40 E-value=4e-13 Score=99.29 Aligned_cols=56 Identities=20% Similarity=0.259 Sum_probs=49.8
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019151 262 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 262 r~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~ 320 (345)
+..|+.++...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 3 Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 3 HMTFTSFQLEELEKAFSR---THYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp --CCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CcccCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 568999999999999998 79999999999999999999999999999999988754
No 39
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.40 E-value=3.6e-13 Score=104.45 Aligned_cols=59 Identities=20% Similarity=0.306 Sum_probs=54.3
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~ 319 (345)
++|++..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 9 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~ 67 (77)
T 1nk2_P 9 KRKRRVLFTKAQTYELERRFRQ---QRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 67 (77)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhh
Confidence 3456678999999999999998 7999999999999999999999999999999998864
No 40
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.40 E-value=2.8e-13 Score=102.74 Aligned_cols=60 Identities=23% Similarity=0.339 Sum_probs=55.5
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~ 320 (345)
.+|++..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~ 61 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQ---GRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS 61 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHh
Confidence 4567789999999999999988 79999999999999999999999999999999988643
No 41
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.39 E-value=1.2e-13 Score=104.65 Aligned_cols=61 Identities=18% Similarity=0.320 Sum_probs=56.3
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~ 321 (345)
++|++..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++...
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQR---NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTT---CSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 4567789999999999999988 799999999999999999999999999999999887654
No 42
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=7e-13 Score=102.58 Aligned_cols=60 Identities=22% Similarity=0.392 Sum_probs=55.1
Q ss_pred cCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCC
Q 019151 260 RRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 322 (345)
Q Consensus 260 rkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~s 322 (345)
+|+.+|+.++...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++....
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQ---NPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CCCccCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhc
Confidence 34567999999999999999 7999999999999999999999999999999999887653
No 43
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.38 E-value=7.1e-13 Score=104.02 Aligned_cols=60 Identities=18% Similarity=0.308 Sum_probs=55.6
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~ 320 (345)
++|++..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 22 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 22 KQKTRTVFSSTQLCVLNDRFQR---QKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp SCCCSSCCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 4566779999999999999998 79999999999999999999999999999999988754
No 44
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.38 E-value=3.3e-13 Score=105.39 Aligned_cols=59 Identities=20% Similarity=0.316 Sum_probs=54.9
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~ 319 (345)
.+|++..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 65 (80)
T 2cue_A 7 GQRNRTSFTQEQIEALEKEFER---THYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 65 (80)
T ss_dssp SCCCCCCSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHH
Confidence 4567789999999999999988 7999999999999999999999999999999998864
No 45
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.38 E-value=6.5e-13 Score=104.19 Aligned_cols=60 Identities=22% Similarity=0.263 Sum_probs=53.6
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~ 320 (345)
++|++..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 20 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 20 RRRGRQTYTRYQTLELEKEFHT---NHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCcccCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 4566789999999999999999 79999999999999999999999999999999998764
No 46
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.37 E-value=8.9e-13 Score=100.96 Aligned_cols=61 Identities=18% Similarity=0.304 Sum_probs=55.8
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~ 321 (345)
++|++..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++...
T Consensus 9 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 9 KRRNRTTFTSYQLEELEKVFQK---THYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CCSCSCSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHh
Confidence 3455678999999999999998 799999999999999999999999999999999987654
No 47
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.37 E-value=7e-13 Score=102.82 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=54.7
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~ 319 (345)
.+|++..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 13 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 71 (77)
T 1puf_A 13 TRKKRCPYTKHQTLELEKEFLF---NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 71 (77)
T ss_dssp TSCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 4566778999999999999998 7999999999999999999999999999999998864
No 48
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.37 E-value=1.5e-12 Score=99.89 Aligned_cols=63 Identities=22% Similarity=0.377 Sum_probs=57.4
Q ss_pred hcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCCC
Q 019151 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSSS 324 (345)
Q Consensus 259 krkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~s~~ 324 (345)
++.+..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...+..
T Consensus 7 ~~~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~ 69 (74)
T 2ly9_A 7 FGIRAKKTKEQLAELKVSYLK---NQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQC 69 (74)
T ss_dssp CCTTCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCSCC
T ss_pred CCCCcCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcCCC
Confidence 456779999999999999998 799999999999999999999999999999999998766543
No 49
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.37 E-value=5.4e-13 Score=102.49 Aligned_cols=61 Identities=15% Similarity=0.189 Sum_probs=54.9
Q ss_pred hcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 019151 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (345)
Q Consensus 259 krkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~ 321 (345)
.+++..|+..+...|+.+|... +|||+..++..||..+||+..||.+||+|+|.|.++...
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~--~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKV--NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHT--TSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhcc
Confidence 3567789999999999999832 699999999999999999999999999999999887654
No 50
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.36 E-value=7e-13 Score=96.95 Aligned_cols=54 Identities=19% Similarity=0.327 Sum_probs=49.6
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019151 263 GKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 263 ~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~ 319 (345)
+.|+.++...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 2 T~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLR---QKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHh---cCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 36899999999999998 7999999999999999999999999999999998763
No 51
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.36 E-value=6.9e-13 Score=101.49 Aligned_cols=60 Identities=17% Similarity=0.232 Sum_probs=54.3
Q ss_pred cCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 019151 260 RRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (345)
Q Consensus 260 rkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~ 321 (345)
+++..|+..+...|+.+|... +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~~--~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~ 62 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNKV--NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 62 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHSS--CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCccCCHHHHHHHHHHHHcc--CCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhcc
Confidence 456789999999999999841 699999999999999999999999999999999887654
No 52
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.35 E-value=1e-12 Score=115.20 Aligned_cols=62 Identities=23% Similarity=0.309 Sum_probs=54.0
Q ss_pred hhhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 019151 257 LRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (345)
Q Consensus 257 ~kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~ 321 (345)
..+|+|..|+..+...|+.||.. +|||+..++..||..+||+..||.+||+|+|+|.|+...
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIFKE---NKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 35667889999999999999999 599999999999999999999999999999999997654
No 53
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.34 E-value=9.2e-13 Score=106.04 Aligned_cols=61 Identities=18% Similarity=0.302 Sum_probs=56.1
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~ 321 (345)
++|++..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 77 (93)
T 3a01_A 17 RKKPRTSFTRIQVAELEKRFHK---QKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTA 77 (93)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhH
Confidence 4566779999999999999999 799999999999999999999999999999999987644
No 54
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.33 E-value=1.3e-12 Score=103.66 Aligned_cols=60 Identities=22% Similarity=0.248 Sum_probs=53.9
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~ 320 (345)
.+|++..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 28 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 28 TKRQRTSYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ---CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 4567789999999999999988 79999999999999999999999999999999988754
No 55
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.33 E-value=7.1e-13 Score=106.75 Aligned_cols=61 Identities=15% Similarity=0.326 Sum_probs=55.8
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhC---------------CChhhhhhhhhhhhhhcccCCC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETG---------------LQLKQINNWFINQRKRNWHANP 321 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~Tg---------------Ls~kQV~NWFiN~RkR~kk~~~ 321 (345)
++|++..|++.+..+|+.||.. +|||+..++..||..+| |+..||.+||+|+|.|.|+...
T Consensus 7 ~rr~R~~ft~~ql~~Le~~F~~---~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 7 GRGSRFTWRKECLAVMESYFNE---NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp CCCCSCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 4566779999999999999999 79999999999999999 9999999999999999887543
No 56
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.32 E-value=1.6e-12 Score=112.81 Aligned_cols=58 Identities=19% Similarity=0.418 Sum_probs=53.9
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 318 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk 318 (345)
++|+|..|+..+...|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 93 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 93 KRKRRTSFTPQAIEALNAYFEK---NPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 3455668999999999999999 799999999999999999999999999999999886
No 57
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.32 E-value=3.5e-12 Score=102.70 Aligned_cols=55 Identities=24% Similarity=0.368 Sum_probs=51.0
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019151 262 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 262 r~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~ 319 (345)
.+.|+.++...|+.+|.. ++||+..++..||..|||+..||.+||+|+|.|.++.
T Consensus 15 ~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~ 69 (89)
T 2ecb_A 15 FKEKTAEQLRVLQASFLN---SSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALK 69 (89)
T ss_dssp CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSC
T ss_pred hccCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHH
Confidence 348999999999999999 7999999999999999999999999999999887663
No 58
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=3.8e-12 Score=101.76 Aligned_cols=60 Identities=23% Similarity=0.365 Sum_probs=54.1
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCCC
Q 019151 262 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSSS 324 (345)
Q Consensus 262 r~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~s~~ 324 (345)
..+|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++......
T Consensus 17 ~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~~ 76 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLK---SSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAVL 76 (89)
T ss_dssp CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCCC
T ss_pred cccCCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhhh
Confidence 345999999999999999 799999999999999999999999999999999887665443
No 59
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.32 E-value=1.4e-12 Score=99.92 Aligned_cols=52 Identities=31% Similarity=0.527 Sum_probs=48.4
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019151 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 318 (345)
Q Consensus 264 ~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk 318 (345)
+-++++...|+..|.. +|||+..++..||..|||+..||.+||+|+|.|.|+
T Consensus 10 ~~~~~Ql~~LE~~F~~---~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kk 61 (66)
T 3nau_A 10 KKTKEQIAHLKASFLQ---SQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQR 61 (66)
T ss_dssp -CCHHHHHHHHHHHHG---GGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhc
Confidence 3478999999999999 799999999999999999999999999999998875
No 60
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.31 E-value=2.8e-12 Score=103.55 Aligned_cols=60 Identities=23% Similarity=0.389 Sum_probs=54.6
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~ 320 (345)
.+|++..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 25 ~~r~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 25 STGKICKKTPEQLHMLKSAFVR---TQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp --CCSSSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCccCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 3456789999999999999998 79999999999999999999999999999999998754
No 61
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.30 E-value=2.1e-12 Score=104.38 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=53.6
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~ 320 (345)
.+|++..|+..+...|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 34 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 93 (97)
T 1b72_A 34 PSGLRTNFTTRQLTELEKEFHF---NKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 93 (97)
T ss_dssp ---CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHh
Confidence 4566789999999999999988 79999999999999999999999999999999988643
No 62
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.29 E-value=2.3e-12 Score=101.49 Aligned_cols=61 Identities=13% Similarity=0.210 Sum_probs=54.2
Q ss_pred hhcCCCCCChhHHHHHHHHHHHc--cCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSH--AKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h--~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~ 319 (345)
++|++..|+.++...|+ -|..+ +.+|||+..++..||..+||+..||.+||+|+|.+.++.
T Consensus 17 ~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~s 79 (80)
T 1wh7_A 17 TKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPSS 79 (80)
T ss_dssp SSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCCC
T ss_pred CCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCCC
Confidence 56677889999999999 57774 348999999999999999999999999999999998763
No 63
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=6.7e-12 Score=94.82 Aligned_cols=56 Identities=20% Similarity=0.355 Sum_probs=51.4
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019151 262 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 262 r~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~ 320 (345)
+..+.+++...|+.+|.. ++||+..++..||..+||+..||.+||+|+|.|.++-.
T Consensus 7 ~~~p~~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~~ 62 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYAL---NAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISVQ 62 (64)
T ss_dssp CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCSS
T ss_pred CCCccHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCCC
Confidence 457789999999999987 79999999999999999999999999999999988743
No 64
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.26 E-value=4.2e-12 Score=97.96 Aligned_cols=61 Identities=20% Similarity=0.350 Sum_probs=54.5
Q ss_pred cCCCCCChhHHHHHHHHH-HHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCC
Q 019151 260 RRAGKLPGDTTSLLKAWW-LSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (345)
Q Consensus 260 rkr~~lpk~a~~~L~~wf-~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~s~ 323 (345)
++++.++.++...|+..| .. ++||+..++..||..+||+..||.+||+|+|.+.++...+.
T Consensus 10 k~r~r~~~~ql~~LE~~F~~~---~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~~s~ 71 (72)
T 2cqx_A 10 KDSPVNKVEPNDTLEKVFVSV---TKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSGPSS 71 (72)
T ss_dssp CCCCCSCSCSTTHHHHHHHHT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCCCCC
Confidence 445678888999999999 66 79999999999999999999999999999999999876543
No 65
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.26 E-value=6.4e-12 Score=110.22 Aligned_cols=60 Identities=20% Similarity=0.406 Sum_probs=54.1
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~ 320 (345)
++|+|..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.+
T Consensus 101 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 160 (160)
T 1e3o_C 101 RRKKRTSIETNIRVALEKSFME---NQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRIN 160 (160)
T ss_dssp ---CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSCC
T ss_pred CCcCccccCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhccC
Confidence 5667789999999999999999 79999999999999999999999999999999998753
No 66
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.26 E-value=1.2e-11 Score=95.54 Aligned_cols=65 Identities=26% Similarity=0.320 Sum_probs=59.5
Q ss_pred hhhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCC
Q 019151 257 LRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (345)
Q Consensus 257 ~kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~s~ 323 (345)
.+||.|+.|+.++..+|+..|... +|||+.+++..||.+|||++.+|..||+|+|--.++..+++
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~--~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~~~~~~ 70 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDV--GLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHSGPSS 70 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHH--CSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCSSCSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecCCCCCC
Confidence 357778899999999999999994 59999999999999999999999999999999999877654
No 67
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.26 E-value=8.2e-12 Score=94.99 Aligned_cols=55 Identities=20% Similarity=0.393 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCC
Q 019151 267 GDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (345)
Q Consensus 267 k~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~s~ 323 (345)
......|+..|..+ ++||+..++..||..+||+..||.+||+|+|.+.|+..+|+
T Consensus 9 ~~~~~~LE~~F~~~--~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~~~~ 63 (64)
T 1x2m_A 9 AQPNAILEKVFTAI--TKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSGPSS 63 (64)
T ss_dssp SCHHHHHHHHHHTT--CSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSSCCC
T ss_pred chHHHHHHHHHHHc--CCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCCCC
Confidence 34688999999543 79999999999999999999999999999999999888875
No 68
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.25 E-value=7.8e-12 Score=110.44 Aligned_cols=63 Identities=17% Similarity=0.430 Sum_probs=52.2
Q ss_pred hhhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCC
Q 019151 257 LRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 322 (345)
Q Consensus 257 ~kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~s 322 (345)
.++|+|..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...+
T Consensus 98 ~~rr~Rt~ft~~Ql~~LE~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 98 RKRKKRTSIEVGVKGALESHFLK---CPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp --------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred cCCCCceeccHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCC
Confidence 34566779999999999999999 7999999999999999999999999999999999987764
No 69
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.24 E-value=1.1e-11 Score=107.41 Aligned_cols=59 Identities=19% Similarity=0.409 Sum_probs=53.9
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~ 319 (345)
++|+|..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 87 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 87 KRKRRTTISIAAKDALERHFGE---HSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCcCccHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 4556778999999999999999 7999999999999999999999999999999998874
No 70
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.23 E-value=1.8e-11 Score=94.08 Aligned_cols=56 Identities=20% Similarity=0.292 Sum_probs=51.5
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCC
Q 019151 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 322 (345)
Q Consensus 264 ~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~s 322 (345)
.++..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...+
T Consensus 10 ~~t~~ql~~LE~~F~~---~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 10 HMSHTQVIELERKFSH---QKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred cCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 4678899999999998 7999999999999999999999999999999999876643
No 71
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.21 E-value=1.4e-11 Score=100.91 Aligned_cols=62 Identities=24% Similarity=0.368 Sum_probs=52.3
Q ss_pred hhhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHH------------------hC---CChhhhhhhhhhhhhh
Q 019151 257 LRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQE------------------TG---LQLKQINNWFINQRKR 315 (345)
Q Consensus 257 ~kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~------------------Tg---Ls~kQV~NWFiN~RkR 315 (345)
.++|+|..|+..+..+|+.+|.. +|||+..+|..||.. +| |+..||.+||+|+|++
T Consensus 8 k~rr~Rt~ft~~Ql~~LE~~F~~---~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 8 KGRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp -----CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCcCcCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 44566779999999999999998 799999999999999 77 9999999999999998
Q ss_pred cccCCC
Q 019151 316 NWHANP 321 (345)
Q Consensus 316 ~kk~~~ 321 (345)
.+....
T Consensus 85 ~k~k~~ 90 (99)
T 1lfb_A 85 EAFRHK 90 (99)
T ss_dssp TSCCC-
T ss_pred HHHhch
Confidence 876544
No 72
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=3.3e-11 Score=99.48 Aligned_cols=60 Identities=23% Similarity=0.317 Sum_probs=54.4
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHh---------------------CCChhhhhhhhhhhhhhc
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQET---------------------GLQLKQINNWFINQRKRN 316 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~T---------------------gLs~kQV~NWFiN~RkR~ 316 (345)
++|.|..|++.+..+|+.+|.. +|||+..++..||..+ +|+..+|.+||+|+|+|.
T Consensus 6 ~Rr~Rt~ft~~ql~~Le~~F~~---~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 6 SGRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp SCCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 4566778999999999999999 7999999999999999 799999999999999998
Q ss_pred ccCC
Q 019151 317 WHAN 320 (345)
Q Consensus 317 kk~~ 320 (345)
++..
T Consensus 83 kr~~ 86 (102)
T 2da6_A 83 AFRQ 86 (102)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 7643
No 73
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.15 E-value=2e-11 Score=106.67 Aligned_cols=59 Identities=22% Similarity=0.452 Sum_probs=54.2
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~ 319 (345)
++|+|..|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 96 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 96 RKRKRTSIENRVRWSLETMFLK---SPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp SCCCCCCCCHHHHHHHHTTTTT---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCcccCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 4566778999999999999987 7999999999999999999999999999999998874
No 74
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.01 E-value=2.3e-10 Score=109.82 Aligned_cols=54 Identities=20% Similarity=0.376 Sum_probs=50.4
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcc
Q 019151 261 RAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 317 (345)
Q Consensus 261 kr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~k 317 (345)
.+..|...++..|+..|.. +|||+..+|..||..|||+.+||++||+|+|+|.|
T Consensus 368 ~~~~~~~~q~~~Le~~f~~---~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 368 AAAAISPQARAFLEQVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHCSSCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhcchHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 3457999999999999988 69999999999999999999999999999999976
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=98.98 E-value=4.6e-10 Score=103.87 Aligned_cols=57 Identities=25% Similarity=0.375 Sum_probs=51.9
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhC---------------------CChhhhhhhhhhhhhhc
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETG---------------------LQLKQINNWFINQRKRN 316 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~Tg---------------------Ls~kQV~NWFiN~RkR~ 316 (345)
++|.|.+|++.+..+|+.||.. +|||+..+|..||..|| |+..||.|||+|+|++.
T Consensus 142 ~RR~R~~ft~~ql~~Le~~F~~---~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 142 MRRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 4556678999999999999999 79999999999999998 89999999999999975
Q ss_pred c
Q 019151 317 W 317 (345)
Q Consensus 317 k 317 (345)
.
T Consensus 219 ~ 219 (221)
T 2h8r_A 219 A 219 (221)
T ss_dssp C
T ss_pred h
Confidence 3
No 76
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.96 E-value=2.7e-10 Score=103.50 Aligned_cols=58 Identities=24% Similarity=0.374 Sum_probs=52.3
Q ss_pred hhcCCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhC---------------------CChhhhhhhhhhhhhhc
Q 019151 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETG---------------------LQLKQINNWFINQRKRN 316 (345)
Q Consensus 258 kkrkr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~Tg---------------------Ls~kQV~NWFiN~RkR~ 316 (345)
++|.|..|++.++.+|+.+|.. +|||+..+|..||..|| |+..||.+||+|+|++.
T Consensus 115 ~rr~R~~ft~~ql~~Le~~F~~---~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 115 GRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---HCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 4566779999999999999999 69999999999999999 99999999999999997
Q ss_pred cc
Q 019151 317 WH 318 (345)
Q Consensus 317 kk 318 (345)
+.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 74
No 77
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=2.6e-09 Score=82.64 Aligned_cols=48 Identities=21% Similarity=0.439 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcc
Q 019151 267 GDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 317 (345)
Q Consensus 267 k~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~k 317 (345)
+++..+|+..|.. +|||+.+++..||..+||+.+.|..||+|+|.+.-
T Consensus 14 k~ql~~Lk~yF~~---n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~~ 61 (71)
T 2da7_A 14 KDHMSVLKAYYAM---NMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQY 61 (71)
T ss_dssp THHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccccc
Confidence 6889999999999 79999999999999999999999999999997543
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=96.08 E-value=0.00089 Score=45.60 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=16.4
Q ss_pred hhhhhhhhhhhhhcccCCC
Q 019151 303 KQINNWFINQRKRNWHANP 321 (345)
Q Consensus 303 kQV~NWFiN~RkR~kk~~~ 321 (345)
.||..||+|+|.|.|+...
T Consensus 1 rQVkIWFQNRRaK~Kk~~~ 19 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVF 19 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHH
T ss_pred CCceeccHHHHHHHHHHhH
Confidence 4899999999999987654
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.15 E-value=0.013 Score=45.20 Aligned_cols=45 Identities=27% Similarity=0.505 Sum_probs=40.2
Q ss_pred CChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhh
Q 019151 265 LPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQ 312 (345)
Q Consensus 265 lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~ 312 (345)
.++-.+++|+++|..| -...+++...|+.+++|+..||..||.-+
T Consensus 13 ~~p~~~e~L~~Yy~~h---k~L~EeDl~~L~~kskms~qqvkdwFa~k 57 (70)
T 2ys9_A 13 PPPPDIQPLERYWAAH---QQLRETDIPQLSQASRLSTQQVLDWFDSR 57 (70)
T ss_dssp CCCCCCHHHHHHHHHT---CCCCTTHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHh---cccchhhHHHHHHHhCCCHHHHHHHHHhc
Confidence 4566789999999996 88999999999999999999999999643
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=70.84 E-value=6.8 Score=27.48 Aligned_cols=48 Identities=6% Similarity=0.119 Sum_probs=32.9
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhh
Q 019151 262 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 262 r~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~R 313 (345)
+++++.+.+......+.. .++.......+|+..|++..+|.+|....+
T Consensus 3 r~~ys~efK~~~~~~~~~----g~s~~~~~~~vA~~~gIs~~tl~~W~~~~~ 50 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN----DNDCKGNQRATARKYNIHRRQIQKWLQCES 50 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH----CTTTTTCHHHHHHHTTSCHHHHHHHHTTHH
T ss_pred CCcCCHHHHHHHHHHHHc----CCCcchHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457888887666555444 222122356899999999999999965443
No 81
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=67.76 E-value=13 Score=29.52 Aligned_cols=50 Identities=10% Similarity=0.022 Sum_probs=39.1
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhc
Q 019151 261 RAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRN 316 (345)
Q Consensus 261 kr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~ 316 (345)
++..|+.+.+..+-.++.. ++.++. ..+|+..|++...|.+|..+++...
T Consensus 4 ~r~~~t~e~K~~iv~~~~~---~g~~~~---~~~A~~~gvs~stl~~~~~~~~~~~ 53 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEE---NPDLRK---GEIARRFNIPPSTLSTILKNKRAIL 53 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHH---CTTSCH---HHHHHHHTCCHHHHHHHHHTHHHHH
T ss_pred cceeCCHHHHHHHHHHHHH---CCCCcH---HHHHHHhCCCHHHHHHHHhchhhhc
Confidence 4568999998877777766 466653 3589999999999999998876643
No 82
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=59.24 E-value=21 Score=22.43 Aligned_cols=42 Identities=10% Similarity=0.075 Sum_probs=29.4
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhh
Q 019151 263 GKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQ 312 (345)
Q Consensus 263 ~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~ 312 (345)
..++.+.+..+...+.. .+ + ...+|+.+|++...|.+|+...
T Consensus 4 ~~l~~~~~~~i~~~~~~----g~-s---~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLL----NV-S---LHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp CCCCHHHHHHHHHHHHT----TC-C---HHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHHHc----CC-C---HHHHHHHHCcCHHHHHHHHhhH
Confidence 46777776555444443 33 2 4578999999999999998543
No 83
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=58.74 E-value=32 Score=25.81 Aligned_cols=45 Identities=13% Similarity=0.157 Sum_probs=31.8
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhh
Q 019151 261 RAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 261 kr~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~R 313 (345)
++++++.+.+......+.. .+ + ...+|+.+|++...|.+|....+
T Consensus 19 ~~~~ys~e~k~~~v~~~~~----g~-s---~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 19 PLRSLTPRDKIHAIQRIHD----GE-S---KASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp CCSSCCHHHHHHHHHHHHH----TC-C---HHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHC----CC-C---HHHHHHHHCcCHHHHHHHHHHHH
Confidence 4568888886555455443 22 2 45889999999999999986544
No 84
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=55.20 E-value=9.1 Score=26.81 Aligned_cols=50 Identities=16% Similarity=0.050 Sum_probs=38.8
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019151 263 GKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 263 ~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~ 320 (345)
..||+..+.++.-.|.. .++ -..+|+..|++...|.++....|++.++..
T Consensus 14 ~~L~~~~r~il~l~~~~----g~s----~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 14 ADLTTDQREALLLTQLL----GLS----YADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp TSSCHHHHHHHHHHHTS----CCC----HHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred HhCCHHHHHHHHHHHHc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 36899999998776554 332 247999999999999999999999987654
No 85
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=54.12 E-value=8 Score=29.31 Aligned_cols=47 Identities=6% Similarity=0.196 Sum_probs=38.2
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019151 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 318 (345)
Q Consensus 264 ~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk 318 (345)
.||...+.+|.-.|.. .| .-..+|+.+|++...|.++....|++.++
T Consensus 37 ~L~~~~r~vl~l~~~~----g~----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYR----GW----STAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp TSCHHHHHHHHHHHTS----CC----CHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 5889999998776555 33 23579999999999999999999998875
No 86
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=47.84 E-value=21 Score=32.34 Aligned_cols=38 Identities=26% Similarity=0.335 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhHHHhhhhHHHHHHHhHHHHHhhhhhC
Q 019151 140 HYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179 (345)
Q Consensus 140 aYc~vL~kykEEL~kP~~~~~~EA~~fc~~iE~QL~sL~~ 179 (345)
.|-.-|-....-|..+.+ ..|.+.+|+.+...|..+|+
T Consensus 83 ~YLkkLD~l~~~Lq~h~~--Lse~l~l~kqLs~sLh~mC~ 120 (204)
T 2jqq_A 83 EYLKKLDEIYGSLRNHSQ--LTEALSLGKRLSKSLHEMCG 120 (204)
T ss_dssp HHHHHHHHHHHTCSSSSH--HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHhC
Confidence 366666666777777654 67999999999999999997
No 87
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=45.18 E-value=18 Score=25.65 Aligned_cols=54 Identities=9% Similarity=0.100 Sum_probs=39.4
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 019151 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (345)
Q Consensus 264 ~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~ 321 (345)
.||+..+.+|.-.|.-.-...+. -..+|+.+|++...|.++....+++.++...
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~s----~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~ 58 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDYT----LEEVGKQFDVTRERIRQIEAKALRKLRHPSR 58 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCCC----HHHHHHHHTCCHHHHHHHHHHHHHGGGSCCG
T ss_pred cCCHHHHHHHHHHHccCCCCCCC----HHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 58888888887765110001322 2469999999999999999999999987543
No 88
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=42.88 E-value=14 Score=29.42 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=37.2
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019151 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 264 ~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~ 319 (345)
.||+..+.++. .+.. .|+ -..+|+.+|++...|.++....|++.++.
T Consensus 109 ~L~~~~r~v~~-~~~~----g~s----~~EIA~~lgis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR----GYS----YREIATILSKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp HSCHHHHHHHH-HHTT----TCC----HHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc----CCC----HHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 47888999988 4444 442 35799999999999999999999988753
No 89
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=42.59 E-value=20 Score=25.82 Aligned_cols=54 Identities=15% Similarity=-0.006 Sum_probs=39.6
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcc-cCC
Q 019151 263 GKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW-HAN 320 (345)
Q Consensus 263 ~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~k-k~~ 320 (345)
..||+..+.++...|.-.-..++ | -..+|+.+|++...|.++....+++.+ ...
T Consensus 9 ~~L~~~er~il~l~~~l~~~~~~-s---~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~ 63 (73)
T 1ku3_A 9 SKLSEREAMVLKMRKGLIDGREH-T---LEEVGAYFGVTRERIRQIENKALRKLKYHES 63 (73)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCC-C---HHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHhcccCCCC-C---HHHHHHHHCCCHHHHHHHHHHHHHHHHhhHh
Confidence 36899999998777641000132 2 247999999999999999999999988 443
No 90
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=41.91 E-value=22 Score=26.67 Aligned_cols=53 Identities=13% Similarity=0.083 Sum_probs=39.5
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019151 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 264 ~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~ 320 (345)
.||+..+.+|...|.-.-..++ | -..+|..+|++...|.++....+++.++..
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~-s---~~EIA~~lgis~~tV~~~~~ra~~kLr~~l 70 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPK-T---LEEVGQYFNVTRERIRQIEVKALRKLRHPS 70 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC-C---HHHHHHHHTCCHHHHHHHHHHHHHHHBTTB
T ss_pred hCCHHHHHHHHHHHccCCCCCC-C---HHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 5899999998777651000132 2 347899999999999999999999988654
No 91
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=40.87 E-value=46 Score=24.89 Aligned_cols=49 Identities=10% Similarity=0.119 Sum_probs=38.4
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 019151 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (345)
Q Consensus 264 ~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~ 321 (345)
.||+..+.+|.-+ .. .+.. ..+|+.+|++...|.++..+.|++.+..+.
T Consensus 29 ~Lt~~e~~vl~l~-~~----g~s~----~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 77 (91)
T 2rnj_A 29 MLTEREMEILLLI-AK----GYSN----QEIASASHITIKTVKTHVSNILSKLEVQDR 77 (91)
T ss_dssp GCCSHHHHHHHHH-HT----TCCT----THHHHHHTCCHHHHHHHHHHHHHHTTCCSS
T ss_pred cCCHHHHHHHHHH-Hc----CCCH----HHHHHHHCcCHHHHHHHHHHHHHHHCCCCH
Confidence 5888899998764 33 3332 378999999999999999999999886543
No 92
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=40.11 E-value=83 Score=24.35 Aligned_cols=48 Identities=27% Similarity=0.346 Sum_probs=36.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhHH---------HhhhhHHHHHHHhHHHHHhhhhh
Q 019151 131 DKELDQFMTHYVLLLYSFKEQLQQH---------VRVHAMEAVMACWDLEQSLQSLT 178 (345)
Q Consensus 131 dpELDqFMeaYc~vL~kykEEL~kP---------~~~~~~EA~~fc~~iE~QL~sL~ 178 (345)
.-|+|+.-.+.-+.-.||.+|+..- +++..++|.+.--.+|.++.+|.
T Consensus 20 ~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~ 76 (86)
T 3swk_A 20 EVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4577777777777788888887653 23556788888888999998876
No 93
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=38.86 E-value=34 Score=26.14 Aligned_cols=51 Identities=12% Similarity=0.087 Sum_probs=40.8
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCCCC
Q 019151 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (345)
Q Consensus 264 ~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~s~ 323 (345)
.|++..+++|.-. .. .+. -..+|+.+|++...|.++..+.+++.+..+...
T Consensus 27 ~Lt~~e~~vl~l~-~~----g~s----~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~ 77 (95)
T 3c57_A 27 GLTDQERTLLGLL-SE----GLT----NKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQ 77 (95)
T ss_dssp CCCHHHHHHHHHH-HT----TCC----HHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCCC
T ss_pred cCCHHHHHHHHHH-Hc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHH
Confidence 5889999998775 33 332 257999999999999999999999998776543
No 94
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=35.56 E-value=1.2e+02 Score=24.58 Aligned_cols=61 Identities=10% Similarity=0.014 Sum_probs=38.7
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHH-HHHHh------CCChhhhhhhhhhhhhhcccCCCCCCc
Q 019151 262 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKAR-LVQET------GLQLKQINNWFINQRKRNWHANPSSST 325 (345)
Q Consensus 262 r~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~-LA~~T------gLs~kQV~NWFiN~RkR~kk~~~s~~~ 325 (345)
+.+++.+....+..++.+ +|--+..+... |.+.. .++...|.+|+...+..-.+.....++
T Consensus 81 ~~~~~~~~~~~I~~~~~~---~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~~~~~~~~~~~ 148 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQ---NPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSGA 148 (159)
T ss_dssp CCCCCTTHHHHHHHHHHH---CSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCCCSCCCCCCCC
T ss_pred CCCCCHHHHHHHHHHHHH---CccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhCCCccCcccCCC
Confidence 346777778888888877 46556555433 32221 489999999998776655444444433
No 95
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=34.84 E-value=27 Score=28.00 Aligned_cols=47 Identities=13% Similarity=0.196 Sum_probs=38.2
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019151 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 318 (345)
Q Consensus 264 ~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk 318 (345)
.||+..+.++.-.|.. .++ -..+|+.+|++...|.+|....|++.++
T Consensus 22 ~L~~~~r~vl~l~y~~----g~s----~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYAD----DYS----LAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHT----CCC----HHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 5899999998876655 332 2579999999999999999999988764
No 96
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=34.69 E-value=64 Score=24.31 Aligned_cols=41 Identities=12% Similarity=-0.011 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhh
Q 019151 269 TTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQ 312 (345)
Q Consensus 269 a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~ 312 (345)
....+..|...|+..|-++.+ .||+.+|++...+...|.-.
T Consensus 3 ~~~~i~~~i~~~~~~~~~~~~---~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFTLS---VLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCCHH---HHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCHH---HHHHHHCcCHHHHHHHHHHH
Confidence 456677888888777556644 58888889888888887643
No 97
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=34.52 E-value=22 Score=29.41 Aligned_cols=48 Identities=10% Similarity=0.075 Sum_probs=38.1
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccC
Q 019151 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 264 ~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~ 319 (345)
.||+..+.++.-.+.. .++- ..+|+.+|++...|.++....|++.++.
T Consensus 140 ~L~~~~r~vl~l~~~~----g~s~----~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 140 SLPEDLRMAITLRELD----GLSY----EEIAAIMDCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp HSCHHHHHHHHHHHTT----CCCH----HHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHhHHHHHc----CCCH----HHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3788888888765554 3322 4799999999999999999999998764
No 98
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=34.25 E-value=22 Score=25.66 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.1
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 019151 291 KARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 291 K~~LA~~TgLs~kQV~NWFiN~R 313 (345)
...||+.+|++...|++|..+.+
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 35799999999999999998754
No 99
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=34.08 E-value=21 Score=24.33 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 019151 291 KARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 291 K~~LA~~TgLs~kQV~NWFiN~R 313 (345)
...||+.+|++...|++|..+.+
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 35799999999999999987643
No 100
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=34.00 E-value=21 Score=24.18 Aligned_cols=22 Identities=18% Similarity=0.089 Sum_probs=19.2
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019151 292 ARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 292 ~~LA~~TgLs~kQV~NWFiN~R 313 (345)
..||+.+|++...|+.|..+.+
T Consensus 18 ~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 18 SELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 5799999999999999997643
No 101
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=33.82 E-value=30 Score=25.71 Aligned_cols=48 Identities=8% Similarity=0.042 Sum_probs=37.7
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019151 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 264 ~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~ 320 (345)
.|+...+++|.-+ .. .+ .-..+|+.+|++...|.++..+.+++.+..+
T Consensus 21 ~Lt~~e~~vl~l~-~~----g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 68 (82)
T 1je8_A 21 QLTPRERDILKLI-AQ----GL----PNKMIARRLDITESTVKVHVKHMLKKMKLKS 68 (82)
T ss_dssp GSCHHHHHHHHHH-TT----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCSS
T ss_pred cCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 5888888888764 22 33 2357999999999999999999999987654
No 102
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=33.34 E-value=38 Score=23.72 Aligned_cols=50 Identities=12% Similarity=0.067 Sum_probs=38.9
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019151 262 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 262 r~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~ 320 (345)
...|++..+.+|.-+ .. .+ + -..+|+.+|++...|..++...+++....+
T Consensus 9 ~~~L~~~e~~il~~~-~~----g~-s---~~eIA~~l~is~~tV~~~~~~~~~kl~~~~ 58 (74)
T 1fse_A 9 KPLLTKREREVFELL-VQ----DK-T---TKEIASELFISEKTVRNHISNAMQKLGVKG 58 (74)
T ss_dssp CCCCCHHHHHHHHHH-TT----TC-C---HHHHHHHHTSCHHHHHHHHHHHHHHHTCSS
T ss_pred CCCCCHHHHHHHHHH-Hc----CC-C---HHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
Confidence 357899999998764 32 44 2 357999999999999999999888877543
No 103
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=33.22 E-value=24 Score=29.99 Aligned_cols=47 Identities=11% Similarity=0.187 Sum_probs=38.9
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019151 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 318 (345)
Q Consensus 264 ~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk 318 (345)
.||+..+.+|.-.|.. .++ -..+|+.+|++...|.++....|++.++
T Consensus 187 ~L~~~~r~vl~l~~~~----g~s----~~EIA~~lgis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYE----ELP----AKEVAKILETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp TSCHHHHHHHHHHHTS----CCC----HHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhc----CCC----HHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 5899999999877654 332 3479999999999999999999998875
No 104
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=32.75 E-value=22 Score=24.53 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 019151 291 KARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 291 K~~LA~~TgLs~kQV~NWFiN~R 313 (345)
...||+.+|++...|++|..+.+
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~ 41 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVT 41 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 35799999999999999998754
No 105
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=32.17 E-value=15 Score=30.25 Aligned_cols=47 Identities=23% Similarity=0.311 Sum_probs=38.3
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019151 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 318 (345)
Q Consensus 264 ~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk 318 (345)
.||+..+.++.-.+... .+| ..+|+.+|++...|.++....|++.++
T Consensus 135 ~L~~~~r~vl~l~~~~g--~s~------~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 135 RLPEAQRALIERAFFGD--LTH------RELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp TSCHHHHHHHHHHHHSC--CSS------CCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC--CCH------HHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 48999999998766653 333 268999999999999999999998875
No 106
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=31.98 E-value=36 Score=21.79 Aligned_cols=41 Identities=7% Similarity=0.118 Sum_probs=27.9
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 019151 263 GKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFIN 311 (345)
Q Consensus 263 ~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN 311 (345)
..++.+....+...+.. .. + ...+|+.+|++...|..|+..
T Consensus 4 ~~~~~~~~~~i~~l~~~----g~-s---~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 4 RAINKHEQEQISRLLEK----GH-P---RQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp CSSCTTHHHHHHHHHHT----TC-C---HHHHHHTTSCCHHHHHHHSCT
T ss_pred CCCCHHHHHHHHHHHHc----CC-C---HHHHHHHHCCCHHHHHHHHHH
Confidence 35666655555444443 22 2 457899999999999999864
No 107
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=31.88 E-value=90 Score=23.79 Aligned_cols=52 Identities=8% Similarity=0.184 Sum_probs=33.5
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCH-HHHHHHHHHhCCChhhhhhhhhhhhh
Q 019151 262 AGKLPGDTTSLLKAWWLSHAKWPYPTE-EDKARLVQETGLQLKQINNWFINQRK 314 (345)
Q Consensus 262 r~~lpk~a~~~L~~wf~~h~~~PYPS~-~eK~~LA~~TgLs~kQV~NWFiN~Rk 314 (345)
+++|+.+.+...-..+..+- .-|++. .....+|..+|++..+|.+|..-.+.
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~-~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~~~ 56 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQ-GEYDSQWATICSIAPKIGCTPETLRVWVRQHER 56 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhcc-cccccccccHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 45788888655444443310 013333 35678999999999999999765443
No 108
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=30.13 E-value=27 Score=24.49 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.2
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019151 292 ARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 292 ~~LA~~TgLs~kQV~NWFiN~R 313 (345)
..||+.+|++...|+.|..+.+
T Consensus 27 ~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 27 RWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 5799999999999999997654
No 109
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=29.95 E-value=26 Score=24.43 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 019151 291 KARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 291 K~~LA~~TgLs~kQV~NWFiN~R 313 (345)
...||+.+|++...|++|..+.+
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSET 43 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999987643
No 110
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=28.86 E-value=28 Score=24.40 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=19.0
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019151 292 ARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 292 ~~LA~~TgLs~kQV~NWFiN~R 313 (345)
..||+.+|++...|+.|..+.+
T Consensus 27 ~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 27 EELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHCCCHHHHHHHHCCCC
Confidence 4799999999999999997653
No 111
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=28.76 E-value=72 Score=23.90 Aligned_cols=45 Identities=11% Similarity=0.168 Sum_probs=30.2
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhh
Q 019151 263 GKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 263 ~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~R 313 (345)
++|+.+.+...-..+... ..+ ....+|+.+|++...|.+|....+
T Consensus 4 ~~ys~e~k~~~v~~~~~~--~g~----s~~~ia~~~gIs~~tl~rW~~~~~ 48 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENS--DGA----SLQQIANDLGINRVTLKNWIIKYG 48 (97)
T ss_dssp CCCCHHHHHHHHHHHTTG--GGS----CHHHHHHHHTSCHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHc--CCC----hHHHHHHHHCcCHHHHHHHHHHHh
Confidence 568888765554444320 011 256899999999999999986544
No 112
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=28.46 E-value=85 Score=24.43 Aligned_cols=50 Identities=10% Similarity=0.105 Sum_probs=39.3
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019151 262 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 262 r~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~ 320 (345)
...||+..+++|.-++ . .+. -..+|+.+|++...|.++..+.+++..-.+
T Consensus 32 ~~~Lt~re~~Vl~l~~-~----G~s----~~EIA~~L~iS~~TV~~~l~ri~~KLgv~~ 81 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFA-E----GFL----VTEIAKKLNRSIKTISSQKKSAMMKLGVDN 81 (99)
T ss_dssp SSSCCHHHHHHHHHHH-H----TCC----HHHHHHHHTSCHHHHHHHHHHHHHHHTCSS
T ss_pred cCCCCHHHHHHHHHHH-c----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHCCCC
Confidence 4579999999996644 4 222 268999999999999999999998876543
No 113
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=28.45 E-value=29 Score=23.70 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 019151 291 KARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 291 K~~LA~~TgLs~kQV~NWFiN~R 313 (345)
...||+.+|++...|++|..+.+
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~ 39 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKT 39 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999987644
No 114
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=28.03 E-value=45 Score=22.63 Aligned_cols=29 Identities=7% Similarity=0.129 Sum_probs=25.5
Q ss_pred HHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019151 292 ARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 292 ~~LA~~TgLs~kQV~NWFiN~RkR~kk~~ 320 (345)
..+|+.+|++...|.++..+.+++....+
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~~~ 45 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQVHK 45 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCCCC
Confidence 47999999999999999999999887654
No 115
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=27.92 E-value=31 Score=27.50 Aligned_cols=47 Identities=9% Similarity=0.143 Sum_probs=38.0
Q ss_pred CCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019151 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 318 (345)
Q Consensus 264 ~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk 318 (345)
.||+..+.++.-.|.. .++ -..+|+.+|++...|.+++...|++.++
T Consensus 25 ~L~~~~r~vl~l~~~~----g~s----~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLE----DYS----LSEIADTFNVSRQAVYDNIRRTGDLVED 71 (113)
T ss_dssp GSCHHHHHHHHHHHTS----CCC----HHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4899999998776555 332 2579999999999999999999998764
No 116
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=27.56 E-value=39 Score=24.40 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.3
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019151 292 ARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 292 ~~LA~~TgLs~kQV~NWFiN~R 313 (345)
..||+.+|++...|++|..+.+
T Consensus 29 ~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 29 SELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHhCCCHHHHHHHHcCCC
Confidence 4699999999999999998754
No 117
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=27.36 E-value=31 Score=24.22 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.5
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019151 292 ARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 292 ~~LA~~TgLs~kQV~NWFiN~R 313 (345)
..||+.+|++...|+.|..+.+
T Consensus 24 ~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 24 NRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 4799999999999999998765
No 118
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=27.14 E-value=71 Score=26.23 Aligned_cols=53 Identities=6% Similarity=0.108 Sum_probs=38.8
Q ss_pred hcCCCCCChhHHHHHHHHH-HHccCCCCCCHHHHHHHHH-Hh--CCChhhhhhhhhhhhh
Q 019151 259 KRRAGKLPGDTTSLLKAWW-LSHAKWPYPTEEDKARLVQ-ET--GLQLKQINNWFINQRK 314 (345)
Q Consensus 259 krkr~~lpk~a~~~L~~wf-~~h~~~PYPS~~eK~~LA~-~T--gLs~kQV~NWFiN~Rk 314 (345)
+++|..|+-+.+..+..++ .. +|-.+..+....|. .. |++...|+.|..|+-.
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~---~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~~ 62 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQL---QNRSGQQDLIEWFREKFGKDISQPSVSQILSSKYS 62 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSS---SSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHHH
Confidence 5677899999999999998 45 46666544333222 67 7899999999977544
No 119
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=26.55 E-value=49 Score=23.57 Aligned_cols=47 Identities=11% Similarity=0.130 Sum_probs=36.2
Q ss_pred CChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCC
Q 019151 265 LPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 265 lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~ 320 (345)
||+..+.+|.-+ .. .+. -..+|+.+|++...|.+++...+++.+..+
T Consensus 17 L~~~e~~vl~l~-~~----g~s----~~eIA~~l~is~~tV~~~~~r~~~kl~~~~ 63 (79)
T 1x3u_A 17 LSERERQVLSAV-VA----GLP----NKSIAYDLDISPRTVEVHRANVMAKMKAKS 63 (79)
T ss_dssp HCHHHHHHHHHH-TT----TCC----HHHHHHHTTSCHHHHHHHHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHH-Hc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 677778888664 22 332 247999999999999999999999988654
No 120
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=26.41 E-value=30 Score=24.34 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=18.9
Q ss_pred HHHHHHhCCChhhhhhhhhhh
Q 019151 292 ARLVQETGLQLKQINNWFINQ 312 (345)
Q Consensus 292 ~~LA~~TgLs~kQV~NWFiN~ 312 (345)
..||+.+|++...|+.|..+.
T Consensus 25 ~~lA~~~gis~~~is~~e~g~ 45 (73)
T 3omt_A 25 LWLTETLDKNKTTVSKWCTND 45 (73)
T ss_dssp HHHHHHTTCCHHHHHHHHTTS
T ss_pred HHHHHHHCcCHHHHHHHHcCC
Confidence 479999999999999999875
No 121
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=26.28 E-value=34 Score=23.70 Aligned_cols=21 Identities=19% Similarity=0.094 Sum_probs=18.6
Q ss_pred HHHHHHhCCChhhhhhhhhhh
Q 019151 292 ARLVQETGLQLKQINNWFINQ 312 (345)
Q Consensus 292 ~~LA~~TgLs~kQV~NWFiN~ 312 (345)
..||+.+|++...|+.|..+.
T Consensus 30 ~~lA~~~gis~~~i~~~e~g~ 50 (74)
T 1y7y_A 30 ETLAFLSGLDRSYVGGVERGQ 50 (74)
T ss_dssp HHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHCcCHHHHHHHHCCC
Confidence 469999999999999998764
No 122
>1xc0_A Pardaxin P-4, PA4; BEND-helix-BEND-helix motif, signaling protein; NMR {Synthetic} SCOP: j.6.1.1 PDB: 2kns_A
Probab=25.56 E-value=65 Score=20.64 Aligned_cols=22 Identities=41% Similarity=0.563 Sum_probs=17.5
Q ss_pred HHHHHhhCCChHHHHHHHHhhh
Q 019151 73 CKAEIVGHPLYEQLLSAHVSCL 94 (345)
Q Consensus 73 lKakI~sHPlYp~Ll~A~idC~ 94 (345)
+-.+|++.|||.-||+|--..+
T Consensus 5 lipkiissplfktllsavgsal 26 (33)
T 1xc0_A 5 LIPKIISSPLFKTLLSAVGSAL 26 (33)
T ss_dssp SHHHHTTTTTHHHHHHHHHHHT
T ss_pred hhhHHHccHHHHHHHHHHHHHh
Confidence 3468999999999998865544
No 123
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=25.33 E-value=31 Score=24.85 Aligned_cols=22 Identities=9% Similarity=0.225 Sum_probs=19.1
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019151 292 ARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 292 ~~LA~~TgLs~kQV~NWFiN~R 313 (345)
..||+.+|++...|++|..+++
T Consensus 29 ~~lA~~~gvs~~~is~~e~g~~ 50 (80)
T 3kz3_A 29 ESVADKMGMGQSAVAALFNGIN 50 (80)
T ss_dssp HHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHhCcCHHHHHHHHcCCC
Confidence 3799999999999999997754
No 124
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=25.31 E-value=38 Score=24.72 Aligned_cols=22 Identities=5% Similarity=0.135 Sum_probs=19.7
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019151 292 ARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 292 ~~LA~~TgLs~kQV~NWFiN~R 313 (345)
..||+.+|++...|++|..+++
T Consensus 35 ~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 35 FKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 4799999999999999998865
No 125
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=24.71 E-value=35 Score=24.02 Aligned_cols=18 Identities=11% Similarity=0.399 Sum_probs=17.0
Q ss_pred HHHHHHhCCChhhhhhhh
Q 019151 292 ARLVQETGLQLKQINNWF 309 (345)
Q Consensus 292 ~~LA~~TgLs~kQV~NWF 309 (345)
..||+.+|++..-|+.|.
T Consensus 14 ~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 14 RAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHhCCCHHHHHHHH
Confidence 579999999999999998
No 126
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=24.48 E-value=1.4e+02 Score=23.15 Aligned_cols=52 Identities=12% Similarity=-0.088 Sum_probs=31.3
Q ss_pred CCCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhC--CChhhhhhhhhhhhh-hcccCC
Q 019151 262 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETG--LQLKQINNWFINQRK-RNWHAN 320 (345)
Q Consensus 262 r~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~Tg--Ls~kQV~NWFiN~Rk-R~kk~~ 320 (345)
+.+++.+....+..+ .. .|.-+. ..|+...| ++...|.+|+..... +.+++.
T Consensus 58 ~~~l~~~~~~~i~~~-~~---~~~~s~---~~i~~~lg~~~s~~tV~r~l~~~g~~~~~k~~ 112 (141)
T 1u78_A 58 RKALSVRDERNVIRA-AS---NSCKTA---RDIRNELQLSASKRTILNVIKRSGVIVRQKLR 112 (141)
T ss_dssp CCSSCHHHHHHHHHH-HH---HCCCCH---HHHHHHTTCCSCHHHHHHHHHHTC--------
T ss_pred CCcCCHHHHHHHHHH-Hh---CCCCCH---HHHHHHHCCCccHHHHHHHHHHCCCceeeecC
Confidence 446788777767666 33 254454 35777778 799999999976554 444433
No 127
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=22.57 E-value=42 Score=25.00 Aligned_cols=22 Identities=14% Similarity=0.388 Sum_probs=19.0
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019151 292 ARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 292 ~~LA~~TgLs~kQV~NWFiN~R 313 (345)
..||+.+|++...|+.|..+.+
T Consensus 26 ~~lA~~~gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 26 LEIAKSIGVSPQTFNTWCKGIA 47 (94)
T ss_dssp HHHHHHHTCCHHHHHHHHTTSC
T ss_pred HHHHHHHCcCHHHHHHHHhCCC
Confidence 4699999999999999998754
No 128
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=22.13 E-value=44 Score=24.72 Aligned_cols=23 Identities=0% Similarity=0.042 Sum_probs=19.5
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 019151 291 KARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 291 K~~LA~~TgLs~kQV~NWFiN~R 313 (345)
...||+.+|++...|+.|..+.+
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 35799999999999999997753
No 129
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=22.11 E-value=45 Score=23.71 Aligned_cols=22 Identities=23% Similarity=0.157 Sum_probs=19.2
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019151 292 ARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 292 ~~LA~~TgLs~kQV~NWFiN~R 313 (345)
..||+.+|++...|+.|..+.+
T Consensus 27 ~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 27 SELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHhCCCHHHHHHHHcCCC
Confidence 4699999999999999998754
No 130
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=21.98 E-value=41 Score=23.91 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=19.0
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019151 292 ARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 292 ~~LA~~TgLs~kQV~NWFiN~R 313 (345)
..||+.+|++...|+.|..+.+
T Consensus 19 ~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 19 KSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHhCCCHHHHHHHHcCCC
Confidence 4699999999999999987653
No 131
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=21.28 E-value=80 Score=28.08 Aligned_cols=50 Identities=10% Similarity=0.080 Sum_probs=40.7
Q ss_pred CCCChhHHHHHHHHHHHccCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccCCC
Q 019151 263 GKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (345)
Q Consensus 263 ~~lpk~a~~~L~~wf~~h~~~PYPS~~eK~~LA~~TgLs~kQV~NWFiN~RkR~kk~~~ 321 (345)
..||+..+.+|.-.+ + .++ -..+|+.+|++...|.+...+.|++.+..+.
T Consensus 196 ~~L~~~erevl~L~~-~----G~s----~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~~ 245 (258)
T 3clo_A 196 NILSEREKEILRCIR-K----GLS----SKEIAATLYISVNTVNRHRQNILEKLSVGNS 245 (258)
T ss_dssp TSSCHHHHHHHHHHH-T----TCC----HHHHHHHHTCCHHHHHHHHHHHHHHTTCSSH
T ss_pred ccCCHHHHHHHHHHH-c----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 479999999998763 3 332 3478999999999999999999999987653
No 132
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=20.82 E-value=2.6e+02 Score=22.63 Aligned_cols=47 Identities=28% Similarity=0.334 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHH---------HhhhhHHHHHHHhHHHHHhhhhh
Q 019151 132 KELDQFMTHYVLLLYSFKEQLQQH---------VRVHAMEAVMACWDLEQSLQSLT 178 (345)
Q Consensus 132 pELDqFMeaYc~vL~kykEEL~kP---------~~~~~~EA~~fc~~iE~QL~sL~ 178 (345)
-|+|..-.+.=+.-.||.+|+..- +++..+++++.--.+|.++.+|.
T Consensus 41 leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~ 96 (119)
T 3ol1_A 41 VERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 96 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 345555444445555666665442 23455677766667888888887
No 133
>1e8o_B SRP14, signal recognition particle 14 kDa protein; ALU ribonucleoprotein particle, protein recognition of AN RNA U-turn, translational control; HET: GDP; 3.20A {Homo sapiens} SCOP: d.49.1.1 PDB: 1e8s_B 1ry1_D*
Probab=20.41 E-value=47 Score=26.88 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=16.6
Q ss_pred CChHHHHHHHHHHHHHHHH
Q 019151 130 DDKELDQFMTHYVLLLYSF 148 (345)
Q Consensus 130 ~dpELDqFMeaYc~vL~ky 148 (345)
...+|+.|+.+|+.||...
T Consensus 71 ~~~dl~~F~~~Y~~v~K~~ 89 (106)
T 1e8o_B 71 SSKEVNKFQMAYSNLLRAN 89 (106)
T ss_dssp ETTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 5689999999999999764
No 134
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=20.16 E-value=50 Score=24.39 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=16.9
Q ss_pred HHHHHHhCCChhhhhhhhh
Q 019151 292 ARLVQETGLQLKQINNWFI 310 (345)
Q Consensus 292 ~~LA~~TgLs~kQV~NWFi 310 (345)
..||+.+|++..-|++|..
T Consensus 26 ~~LA~~~Gvs~stls~~~~ 44 (74)
T 1neq_A 26 SALSRQFGYAPTTLANALE 44 (74)
T ss_dssp HHHHHHHSSCHHHHHHTTT
T ss_pred HHHHHHHCcCHHHHHHHHc
Confidence 3699999999999999965
No 135
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=20.09 E-value=47 Score=24.26 Aligned_cols=21 Identities=10% Similarity=0.229 Sum_probs=18.8
Q ss_pred HHHHHHhCCChhhhhhhhhhh
Q 019151 292 ARLVQETGLQLKQINNWFINQ 312 (345)
Q Consensus 292 ~~LA~~TgLs~kQV~NWFiN~ 312 (345)
..||+.+|++...|+.|..+.
T Consensus 34 ~~lA~~~gis~~~is~~e~g~ 54 (92)
T 1lmb_3 34 ESVADKMGMGQSGVGALFNGI 54 (92)
T ss_dssp HHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHCcCHHHHHHHHcCC
Confidence 479999999999999999875
No 136
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=20.05 E-value=48 Score=23.71 Aligned_cols=22 Identities=14% Similarity=0.060 Sum_probs=19.1
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019151 292 ARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 292 ~~LA~~TgLs~kQV~NWFiN~R 313 (345)
..||+.+|++...|+.|-.+.+
T Consensus 31 ~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 31 KELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHCcCHHHHHHHHCCCC
Confidence 4789999999999999998753
Done!