Query 019152
Match_columns 345
No_of_seqs 236 out of 2832
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 07:07:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019152.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019152hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.1E-46 6.8E-51 334.5 32.6 278 55-340 2-348 (352)
2 KOG0145 RNA-binding protein EL 100.0 1.1E-42 2.3E-47 275.0 26.3 281 53-341 38-358 (360)
3 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 3.5E-41 7.6E-46 310.7 33.6 280 54-341 94-480 (481)
4 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 8.7E-41 1.9E-45 308.1 32.8 276 55-341 1-351 (481)
5 TIGR01645 half-pint poly-U bin 100.0 1.8E-40 3.9E-45 303.6 34.0 165 56-220 107-283 (612)
6 KOG0117 Heterogeneous nuclear 100.0 2.2E-41 4.8E-46 286.7 25.6 243 53-341 80-331 (506)
7 TIGR01628 PABP-1234 polyadenyl 100.0 3.1E-41 6.8E-46 318.9 29.3 246 58-340 2-260 (562)
8 TIGR01648 hnRNP-R-Q heterogene 100.0 3.5E-41 7.6E-46 308.0 28.4 243 53-341 55-307 (578)
9 TIGR01628 PABP-1234 polyadenyl 100.0 2.4E-41 5.1E-46 319.7 27.9 265 53-340 85-363 (562)
10 KOG0148 Apoptosis-promoting RN 100.0 9.7E-42 2.1E-46 271.1 21.1 235 53-342 3-239 (321)
11 TIGR01622 SF-CC1 splicing fact 100.0 4.6E-39 1E-43 297.6 32.0 284 53-342 86-449 (457)
12 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2.4E-38 5.1E-43 296.9 32.3 275 52-341 171-502 (509)
13 KOG0144 RNA-binding protein CU 100.0 7.1E-37 1.5E-41 258.2 22.3 283 53-341 31-504 (510)
14 KOG0127 Nucleolar protein fibr 100.0 1.3E-34 2.9E-39 251.1 25.6 279 57-338 6-375 (678)
15 KOG0123 Polyadenylate-binding 100.0 1.9E-32 4.1E-37 240.3 21.7 236 58-339 3-244 (369)
16 TIGR01659 sex-lethal sex-letha 100.0 4.1E-32 8.9E-37 237.1 23.1 168 52-222 103-276 (346)
17 KOG0124 Polypyrimidine tract-b 100.0 6.5E-31 1.4E-35 217.8 22.1 162 57-218 114-287 (544)
18 TIGR01659 sex-lethal sex-letha 100.0 3.6E-31 7.7E-36 231.2 19.8 166 136-341 102-275 (346)
19 KOG0123 Polyadenylate-binding 100.0 6.6E-31 1.4E-35 230.5 18.8 259 57-339 77-347 (369)
20 TIGR01645 half-pint poly-U bin 100.0 2.2E-29 4.8E-34 230.9 19.5 171 141-340 107-283 (612)
21 KOG0110 RNA-binding protein (R 100.0 3.6E-29 7.7E-34 224.3 19.0 255 54-341 383-693 (725)
22 KOG1190 Polypyrimidine tract-b 100.0 1.4E-27 3.1E-32 200.8 26.2 282 52-342 146-492 (492)
23 KOG0148 Apoptosis-promoting RN 100.0 1.2E-28 2.6E-33 196.6 17.4 165 54-224 60-241 (321)
24 KOG0147 Transcriptional coacti 100.0 4E-29 8.7E-34 218.2 15.4 284 51-340 174-527 (549)
25 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3E-28 6.5E-33 218.3 20.4 161 141-341 3-171 (352)
26 KOG0144 RNA-binding protein CU 100.0 9E-29 1.9E-33 209.4 12.7 165 139-339 32-204 (510)
27 KOG0127 Nucleolar protein fibr 100.0 1.6E-27 3.4E-32 207.4 17.1 264 56-320 117-516 (678)
28 TIGR01648 hnRNP-R-Q heterogene 100.0 4.7E-27 1E-31 215.4 19.9 195 103-340 18-221 (578)
29 TIGR01622 SF-CC1 splicing fact 99.9 1.5E-26 3.2E-31 214.3 20.5 173 139-340 87-265 (457)
30 KOG0131 Splicing factor 3b, su 99.9 9E-27 1.9E-31 175.4 13.5 169 55-225 8-181 (203)
31 KOG0145 RNA-binding protein EL 99.9 5.6E-26 1.2E-30 180.3 14.2 166 138-341 38-209 (360)
32 KOG0117 Heterogeneous nuclear 99.9 2.9E-25 6.4E-30 189.0 19.2 193 100-340 40-247 (506)
33 KOG0131 Splicing factor 3b, su 99.9 4.1E-26 8.9E-31 171.8 12.1 164 139-340 7-176 (203)
34 KOG4212 RNA-binding protein hn 99.9 2.2E-23 4.8E-28 177.0 26.8 164 53-217 41-290 (608)
35 TIGR01642 U2AF_lg U2 snRNP aux 99.9 1.3E-23 2.8E-28 197.4 21.1 168 53-220 292-501 (509)
36 KOG0109 RNA-binding protein LA 99.9 3.2E-24 7E-29 173.1 10.4 148 58-222 4-151 (346)
37 KOG1190 Polypyrimidine tract-b 99.9 8.7E-23 1.9E-27 172.1 18.3 279 53-342 25-374 (492)
38 KOG1456 Heterogeneous nuclear 99.9 3.9E-21 8.4E-26 160.4 26.3 273 61-340 127-488 (494)
39 KOG0110 RNA-binding protein (R 99.9 3.7E-23 8E-28 185.9 14.9 257 53-339 224-596 (725)
40 KOG0109 RNA-binding protein LA 99.9 4.6E-23 9.9E-28 166.5 10.5 150 142-343 3-152 (346)
41 KOG0146 RNA-binding protein ET 99.9 2.5E-22 5.4E-27 160.3 12.4 172 52-223 15-367 (371)
42 KOG0146 RNA-binding protein ET 99.9 1.3E-22 2.7E-27 162.0 9.6 214 121-343 2-367 (371)
43 KOG0124 Polypyrimidine tract-b 99.9 1.3E-22 2.8E-27 168.8 7.9 168 142-338 114-287 (544)
44 KOG0120 Splicing factor U2AF, 99.9 5.9E-21 1.3E-25 169.6 17.7 267 53-340 172-491 (500)
45 KOG4211 Splicing factor hnRNP- 99.9 5.2E-20 1.1E-24 159.4 21.8 274 53-335 7-352 (510)
46 KOG1456 Heterogeneous nuclear 99.8 1.8E-18 3.9E-23 144.6 23.2 279 52-342 27-364 (494)
47 KOG4206 Spliceosomal protein s 99.8 2.4E-19 5.3E-24 141.0 16.8 190 141-339 9-220 (221)
48 KOG0105 Alternative splicing f 99.8 3E-19 6.4E-24 135.1 13.3 148 54-208 4-175 (241)
49 KOG4205 RNA-binding protein mu 99.8 2.5E-19 5.5E-24 152.0 10.8 170 55-226 5-181 (311)
50 KOG4206 Spliceosomal protein s 99.8 5.5E-18 1.2E-22 133.5 15.7 158 57-219 10-220 (221)
51 KOG0105 Alternative splicing f 99.8 4.9E-18 1.1E-22 128.6 14.6 169 140-323 5-173 (241)
52 KOG4205 RNA-binding protein mu 99.8 3.7E-18 8E-23 144.9 9.7 163 140-338 5-173 (311)
53 KOG0147 Transcriptional coacti 99.7 1.2E-18 2.6E-23 153.0 6.2 173 141-340 179-357 (549)
54 PLN03134 glycine-rich RNA-bind 99.7 5E-17 1.1E-21 124.7 12.1 84 139-222 32-115 (144)
55 KOG1457 RNA binding protein (c 99.7 1.7E-16 3.7E-21 123.9 14.8 153 52-208 30-273 (284)
56 KOG1457 RNA binding protein (c 99.7 5.2E-16 1.1E-20 121.2 13.6 183 141-323 34-271 (284)
57 KOG1365 RNA-binding protein Fu 99.7 2.9E-16 6.4E-21 131.9 11.5 271 55-336 59-357 (508)
58 KOG1548 Transcription elongati 99.7 1.4E-15 2.9E-20 126.5 15.0 192 140-338 133-349 (382)
59 PLN03134 glycine-rich RNA-bind 99.7 1.1E-15 2.4E-20 117.2 12.4 81 53-133 31-115 (144)
60 KOG0106 Alternative splicing f 99.7 3.4E-16 7.4E-21 124.8 9.1 165 143-337 3-167 (216)
61 KOG1548 Transcription elongati 99.7 8.8E-15 1.9E-19 121.7 17.2 166 52-221 130-352 (382)
62 KOG0106 Alternative splicing f 99.6 6.8E-16 1.5E-20 123.1 7.3 149 57-217 2-167 (216)
63 KOG0125 Ataxin 2-binding prote 99.6 1.2E-15 2.7E-20 125.8 7.8 82 52-133 92-175 (376)
64 KOG4211 Splicing factor hnRNP- 99.6 1.9E-14 4E-19 125.3 15.1 161 140-335 9-176 (510)
65 KOG4212 RNA-binding protein hn 99.6 5.2E-14 1.1E-18 120.5 17.0 197 141-343 44-296 (608)
66 KOG0122 Translation initiation 99.6 6.3E-15 1.4E-19 117.0 9.5 83 139-221 187-269 (270)
67 PF00076 RRM_1: RNA recognitio 99.6 5.9E-15 1.3E-19 99.6 7.2 67 59-125 1-70 (70)
68 PF00076 RRM_1: RNA recognitio 99.6 1.6E-14 3.6E-19 97.4 8.9 70 144-214 1-70 (70)
69 PLN03120 nucleic acid binding 99.6 2.3E-14 5E-19 117.5 10.8 76 56-132 4-80 (260)
70 KOG0107 Alternative splicing f 99.6 1.3E-14 2.8E-19 109.3 8.6 78 56-134 10-87 (195)
71 KOG0114 Predicted RNA-binding 99.5 6.2E-14 1.3E-18 96.1 9.7 83 51-133 13-96 (124)
72 KOG0121 Nuclear cap-binding pr 99.5 3.6E-14 7.8E-19 101.1 7.3 77 54-130 34-114 (153)
73 KOG0121 Nuclear cap-binding pr 99.5 3.7E-14 8E-19 101.1 6.9 81 140-220 35-115 (153)
74 KOG4660 Protein Mei2, essentia 99.5 6.4E-13 1.4E-17 117.7 15.3 161 52-221 71-250 (549)
75 PF14259 RRM_6: RNA recognitio 99.5 7.3E-14 1.6E-18 94.1 7.4 67 59-125 1-70 (70)
76 KOG0122 Translation initiation 99.5 2.5E-13 5.3E-18 108.0 11.1 80 53-132 186-269 (270)
77 PF14259 RRM_6: RNA recognitio 99.5 1.6E-13 3.4E-18 92.5 8.7 70 144-214 1-70 (70)
78 KOG0126 Predicted RNA-binding 99.5 5.6E-15 1.2E-19 111.8 1.4 87 139-225 33-119 (219)
79 KOG0114 Predicted RNA-binding 99.5 1.7E-13 3.7E-18 93.9 8.3 70 263-337 19-91 (124)
80 KOG0120 Splicing factor U2AF, 99.5 5.3E-13 1.2E-17 119.3 13.4 169 53-221 286-492 (500)
81 PLN03120 nucleic acid binding 99.5 1.9E-13 4.1E-18 112.2 9.6 73 262-340 4-79 (260)
82 KOG0149 Predicted RNA-binding 99.5 6.9E-14 1.5E-18 110.7 6.7 79 142-221 13-91 (247)
83 KOG0125 Ataxin 2-binding prote 99.5 1.2E-13 2.5E-18 114.3 8.2 75 262-341 96-174 (376)
84 PLN03213 repressor of silencin 99.5 3.4E-13 7.3E-18 117.4 9.6 77 55-131 9-87 (759)
85 COG0724 RNA-binding proteins ( 99.5 2.5E-12 5.3E-17 111.8 15.1 145 141-299 115-260 (306)
86 KOG0111 Cyclophilin-type pepti 99.4 1.1E-13 2.3E-18 108.1 5.2 87 140-226 9-95 (298)
87 KOG0107 Alternative splicing f 99.4 4E-13 8.8E-18 101.4 7.4 76 262-342 10-86 (195)
88 COG0724 RNA-binding proteins ( 99.4 2.6E-12 5.6E-17 111.7 13.2 121 56-176 115-260 (306)
89 KOG0113 U1 small nuclear ribon 99.4 1.1E-12 2.4E-17 107.2 9.8 85 137-221 97-181 (335)
90 PLN03121 nucleic acid binding 99.4 1.2E-12 2.6E-17 105.7 9.7 77 55-132 4-81 (243)
91 KOG0108 mRNA cleavage and poly 99.4 3.3E-13 7.1E-18 120.0 6.9 82 142-223 19-100 (435)
92 smart00362 RRM_2 RNA recogniti 99.4 1.5E-12 3.3E-17 87.9 8.5 70 58-127 1-72 (72)
93 KOG0149 Predicted RNA-binding 99.4 1.3E-12 2.7E-17 103.6 8.0 79 53-132 9-91 (247)
94 PF13893 RRM_5: RNA recognitio 99.4 2.6E-12 5.6E-17 82.2 7.7 55 279-338 1-56 (56)
95 KOG4307 RNA binding protein RB 99.4 1.4E-11 2.9E-16 111.6 14.7 188 142-337 312-510 (944)
96 PF13893 RRM_5: RNA recognitio 99.4 3.1E-12 6.7E-17 81.8 7.1 56 73-129 1-56 (56)
97 KOG4207 Predicted splicing fac 99.4 1.3E-12 2.9E-17 101.2 6.3 74 261-339 12-91 (256)
98 smart00362 RRM_2 RNA recogniti 99.3 6.9E-12 1.5E-16 84.6 8.9 71 143-215 1-71 (72)
99 cd00590 RRM RRM (RNA recogniti 99.3 8.1E-12 1.8E-16 84.8 9.1 71 58-128 1-74 (74)
100 KOG4207 Predicted splicing fac 99.3 2.2E-12 4.7E-17 100.0 6.7 84 139-222 11-94 (256)
101 PLN03213 repressor of silencin 99.3 4.4E-12 9.6E-17 110.5 9.2 78 139-220 8-87 (759)
102 KOG1365 RNA-binding protein Fu 99.3 6.8E-12 1.5E-16 106.0 9.0 161 56-218 161-359 (508)
103 smart00360 RRM RNA recognition 99.3 9.2E-12 2E-16 83.7 7.8 67 61-127 1-71 (71)
104 smart00360 RRM RNA recognition 99.3 1.1E-11 2.4E-16 83.4 8.1 70 146-215 1-70 (71)
105 KOG0113 U1 small nuclear ribon 99.3 1.3E-11 2.8E-16 101.1 9.8 79 52-130 97-179 (335)
106 KOG0111 Cyclophilin-type pepti 99.3 1.9E-12 4.2E-17 101.1 4.5 80 55-134 9-92 (298)
107 PLN03121 nucleic acid binding 99.3 2.2E-11 4.9E-16 98.4 10.7 77 140-220 4-80 (243)
108 KOG0129 Predicted RNA-binding 99.3 6.4E-11 1.4E-15 104.3 13.8 151 52-202 255-432 (520)
109 KOG0129 Predicted RNA-binding 99.3 1.3E-10 2.9E-15 102.3 15.3 164 138-319 256-432 (520)
110 KOG0130 RNA-binding protein RB 99.3 1.2E-11 2.6E-16 89.2 6.7 79 56-134 72-154 (170)
111 cd00590 RRM RRM (RNA recogniti 99.3 6.2E-11 1.3E-15 80.3 9.5 74 143-217 1-74 (74)
112 KOG0130 RNA-binding protein RB 99.3 2.5E-11 5.4E-16 87.6 7.5 85 138-222 69-153 (170)
113 KOG0128 RNA-binding protein SA 99.2 4.5E-12 9.8E-17 117.5 2.4 144 56-220 667-814 (881)
114 KOG0126 Predicted RNA-binding 99.2 1.4E-12 3.1E-17 98.9 -0.7 78 54-131 33-114 (219)
115 KOG4307 RNA binding protein RB 99.2 8.5E-10 1.8E-14 100.3 16.6 71 263-337 868-943 (944)
116 smart00361 RRM_1 RNA recogniti 99.2 1.1E-10 2.3E-15 78.3 7.7 61 155-215 2-69 (70)
117 KOG0132 RNA polymerase II C-te 99.2 4.6E-11 9.9E-16 109.7 7.6 75 261-340 420-494 (894)
118 KOG0226 RNA-binding proteins [ 99.2 1.1E-10 2.5E-15 93.5 7.9 161 59-219 99-268 (290)
119 KOG0108 mRNA cleavage and poly 99.2 8.7E-11 1.9E-15 104.8 7.7 77 57-133 19-99 (435)
120 KOG0153 Predicted RNA-binding 99.1 1.5E-10 3.3E-15 96.9 8.0 81 256-340 222-302 (377)
121 KOG0132 RNA polymerase II C-te 99.1 2.5E-10 5.5E-15 104.9 7.9 106 56-163 421-528 (894)
122 KOG0415 Predicted peptidyl pro 99.1 2.4E-10 5.1E-15 95.8 6.1 83 138-220 236-318 (479)
123 KOG4454 RNA binding protein (R 99.1 5.6E-11 1.2E-15 93.1 2.2 146 53-211 6-153 (267)
124 KOG0128 RNA-binding protein SA 99.1 1.5E-11 3.2E-16 114.1 -1.3 224 56-337 571-811 (881)
125 smart00361 RRM_1 RNA recogniti 99.0 1.1E-09 2.4E-14 73.3 6.9 57 70-126 2-69 (70)
126 KOG0153 Predicted RNA-binding 99.0 2.2E-09 4.9E-14 90.0 9.0 78 52-131 224-302 (377)
127 KOG0415 Predicted peptidyl pro 99.0 1.2E-09 2.5E-14 91.8 7.2 86 46-131 229-318 (479)
128 KOG0112 Large RNA-binding prot 99.0 3.8E-10 8.2E-15 105.4 4.4 160 52-222 368-532 (975)
129 KOG4208 Nucleolar RNA-binding 99.0 1.5E-09 3.3E-14 84.7 7.0 81 141-221 49-130 (214)
130 KOG0112 Large RNA-binding prot 98.9 9.2E-10 2E-14 102.9 4.4 160 139-341 370-531 (975)
131 KOG0151 Predicted splicing reg 98.8 1.3E-08 2.9E-13 92.9 8.7 78 53-130 171-255 (877)
132 KOG4660 Protein Mei2, essentia 98.8 1.1E-08 2.4E-13 91.3 6.3 178 138-340 72-249 (549)
133 KOG4661 Hsp27-ERE-TATA-binding 98.7 5.1E-08 1.1E-12 87.0 9.0 80 53-132 402-485 (940)
134 KOG4661 Hsp27-ERE-TATA-binding 98.7 5.6E-08 1.2E-12 86.8 8.6 82 140-221 404-485 (940)
135 KOG4210 Nuclear localization s 98.7 2.3E-08 5E-13 85.3 5.5 167 55-222 87-265 (285)
136 KOG4454 RNA binding protein (R 98.7 5.6E-09 1.2E-13 82.0 0.5 136 140-323 8-148 (267)
137 PF11608 Limkain-b1: Limkain b 98.6 2.5E-07 5.3E-12 61.6 7.9 70 263-340 3-76 (90)
138 KOG4210 Nuclear localization s 98.6 4.2E-08 9E-13 83.8 5.4 172 140-341 87-264 (285)
139 PF04059 RRM_2: RNA recognitio 98.6 3.7E-07 8.1E-12 64.1 8.7 79 142-220 2-86 (97)
140 KOG0226 RNA-binding proteins [ 98.6 7.2E-08 1.6E-12 77.7 5.7 161 143-336 98-265 (290)
141 KOG4208 Nucleolar RNA-binding 98.6 2E-07 4.2E-12 73.1 7.6 78 55-132 48-130 (214)
142 KOG0151 Predicted splicing reg 98.6 2.2E-07 4.8E-12 85.2 8.5 78 259-341 171-257 (877)
143 KOG0533 RRM motif-containing p 98.6 2.7E-07 5.9E-12 75.9 8.2 82 140-222 82-163 (243)
144 KOG0533 RRM motif-containing p 98.6 3.6E-07 7.8E-12 75.2 8.6 80 53-132 80-162 (243)
145 PF04059 RRM_2: RNA recognitio 98.6 6E-07 1.3E-11 63.0 8.3 77 263-339 2-85 (97)
146 PF11608 Limkain-b1: Limkain b 98.5 7.7E-07 1.7E-11 59.3 8.0 71 57-133 3-78 (90)
147 KOG0116 RasGAP SH3 binding pro 98.5 2.4E-07 5.1E-12 82.6 7.2 75 55-130 287-365 (419)
148 KOG4676 Splicing factor, argin 98.5 1.1E-07 2.4E-12 81.2 3.2 147 57-209 8-214 (479)
149 KOG0116 RasGAP SH3 binding pro 98.4 7.7E-07 1.7E-11 79.3 7.0 78 142-220 289-366 (419)
150 PF08777 RRM_3: RNA binding mo 98.4 1.2E-06 2.5E-11 63.2 6.3 72 263-337 2-76 (105)
151 KOG2193 IGF-II mRNA-binding pr 98.4 5.5E-08 1.2E-12 83.8 -0.7 151 142-340 2-156 (584)
152 KOG4209 Splicing factor RNPS1, 98.3 1.6E-06 3.4E-11 71.7 6.2 83 138-221 98-180 (231)
153 KOG4676 Splicing factor, argin 98.2 2.4E-06 5.2E-11 73.2 5.8 177 143-323 9-211 (479)
154 KOG2193 IGF-II mRNA-binding pr 98.1 3.5E-07 7.6E-12 78.9 -0.9 152 58-220 3-156 (584)
155 KOG4209 Splicing factor RNPS1, 98.1 4.6E-06 1E-10 68.9 5.6 78 53-131 98-179 (231)
156 PF08777 RRM_3: RNA binding mo 98.0 1.7E-05 3.6E-10 57.2 6.0 57 57-115 2-58 (105)
157 COG5175 MOT2 Transcriptional r 98.0 8.7E-06 1.9E-10 68.5 4.7 104 58-161 116-240 (480)
158 KOG0115 RNA-binding protein p5 97.9 4.5E-05 9.6E-10 62.1 6.7 89 107-206 7-95 (275)
159 PF14605 Nup35_RRM_2: Nup53/35 97.8 5.8E-05 1.2E-09 46.9 5.2 52 263-317 2-53 (53)
160 PF14605 Nup35_RRM_2: Nup53/35 97.8 5.8E-05 1.3E-09 46.9 4.9 52 57-111 2-53 (53)
161 KOG1855 Predicted RNA-binding 97.8 2.5E-05 5.4E-10 68.0 3.8 62 260-323 229-309 (484)
162 COG5175 MOT2 Transcriptional r 97.7 7.8E-05 1.7E-09 62.9 5.6 77 263-344 115-206 (480)
163 PF08675 RNA_bind: RNA binding 97.6 0.00024 5.2E-09 47.6 6.2 59 53-116 6-64 (87)
164 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00036 7.9E-09 49.5 7.4 72 263-341 7-92 (100)
165 KOG3152 TBP-binding protein, a 97.5 8E-05 1.7E-09 60.6 2.7 68 56-123 74-157 (278)
166 KOG1995 Conserved Zn-finger pr 97.5 0.00012 2.6E-09 62.7 3.9 83 140-222 65-155 (351)
167 KOG2416 Acinus (induces apopto 97.5 0.00016 3.5E-09 65.6 4.8 87 254-341 436-522 (718)
168 KOG1995 Conserved Zn-finger pr 97.4 0.00036 7.8E-09 59.8 6.0 82 52-133 62-155 (351)
169 KOG1996 mRNA splicing factor [ 97.4 0.00046 1E-08 57.3 6.4 61 70-130 300-365 (378)
170 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.00094 2E-08 47.4 6.7 72 56-129 6-89 (100)
171 KOG2202 U2 snRNP splicing fact 97.3 0.00014 3.1E-09 59.3 2.6 61 277-342 83-149 (260)
172 PF10309 DUF2414: Protein of u 97.3 0.0021 4.6E-08 40.9 7.2 54 56-114 5-62 (62)
173 KOG0115 RNA-binding protein p5 97.3 0.00073 1.6E-08 55.2 6.3 98 195-336 6-109 (275)
174 KOG2416 Acinus (induces apopto 97.3 0.00029 6.4E-09 64.0 4.4 77 52-130 440-520 (718)
175 PF15023 DUF4523: Protein of u 97.3 0.0015 3.2E-08 48.5 7.1 76 256-338 80-159 (166)
176 KOG3152 TBP-binding protein, a 97.3 0.00015 3.3E-09 59.0 2.2 72 141-212 74-157 (278)
177 KOG1996 mRNA splicing factor [ 97.3 0.00085 1.8E-08 55.8 6.4 66 155-220 300-366 (378)
178 KOG1855 Predicted RNA-binding 97.2 0.00036 7.8E-09 61.0 3.5 64 54-117 229-309 (484)
179 KOG4849 mRNA cleavage factor I 97.2 0.00061 1.3E-08 58.0 4.6 76 140-215 79-156 (498)
180 KOG2202 U2 snRNP splicing fact 97.1 0.00026 5.6E-09 57.9 2.1 64 156-220 83-147 (260)
181 KOG2314 Translation initiation 97.1 0.003 6.5E-08 57.4 8.7 77 140-217 57-140 (698)
182 PF08952 DUF1866: Domain of un 97.1 0.0037 8.1E-08 47.1 7.5 72 259-338 24-104 (146)
183 PF15023 DUF4523: Protein of u 96.7 0.0085 1.8E-07 44.6 7.0 73 54-130 84-160 (166)
184 PF10309 DUF2414: Protein of u 96.5 0.016 3.4E-07 36.9 6.5 53 263-320 6-62 (62)
185 KOG2591 c-Mpl binding protein, 96.5 0.0068 1.5E-07 55.1 6.4 71 263-335 176-246 (684)
186 KOG2314 Translation initiation 96.3 0.011 2.3E-07 54.0 6.5 71 263-338 59-141 (698)
187 PF08952 DUF1866: Domain of un 96.3 0.016 3.4E-07 43.9 6.2 58 71-133 51-108 (146)
188 PF04847 Calcipressin: Calcipr 96.2 0.013 2.9E-07 46.7 6.0 63 275-342 8-72 (184)
189 KOG4849 mRNA cleavage factor I 96.1 0.011 2.4E-07 50.6 5.0 75 262-339 80-161 (498)
190 PF07576 BRAP2: BRCA1-associat 96.1 0.095 2.1E-06 38.0 9.1 66 56-121 13-81 (110)
191 KOG2135 Proteins containing th 95.9 0.006 1.3E-07 54.4 2.9 74 261-340 371-445 (526)
192 PF08675 RNA_bind: RNA binding 95.9 0.043 9.3E-07 37.0 6.0 55 263-322 10-64 (87)
193 PF03467 Smg4_UPF3: Smg-4/UPF3 95.7 0.013 2.8E-07 46.7 3.9 67 55-121 6-82 (176)
194 KOG2253 U1 snRNP complex, subu 95.6 0.0092 2E-07 55.5 3.0 69 55-128 39-107 (668)
195 KOG4574 RNA-binding protein (c 95.6 0.0085 1.8E-07 57.2 2.7 73 265-340 301-373 (1007)
196 KOG0804 Cytoplasmic Zn-finger 95.3 0.085 1.8E-06 47.1 7.6 69 53-121 71-142 (493)
197 KOG2253 U1 snRNP complex, subu 95.2 0.018 3.9E-07 53.6 3.4 82 255-344 33-114 (668)
198 PF03880 DbpA: DbpA RNA bindin 95.2 0.14 3E-06 34.3 6.9 68 264-338 2-74 (74)
199 KOG2068 MOT2 transcription fac 95.0 0.011 2.4E-07 50.6 1.5 76 57-132 78-163 (327)
200 KOG2591 c-Mpl binding protein, 95.0 0.07 1.5E-06 48.8 6.4 94 107-216 150-247 (684)
201 PF07576 BRAP2: BRCA1-associat 95.0 0.48 1E-05 34.4 9.6 75 263-338 14-92 (110)
202 KOG4574 RNA-binding protein (c 94.9 0.019 4.1E-07 54.9 2.7 72 59-132 301-374 (1007)
203 KOG2068 MOT2 transcription fac 94.7 0.011 2.5E-07 50.5 0.7 76 264-344 79-166 (327)
204 PF03467 Smg4_UPF3: Smg-4/UPF3 94.6 0.044 9.5E-07 43.7 3.8 82 140-221 6-98 (176)
205 PF04847 Calcipressin: Calcipr 93.9 0.22 4.8E-06 39.8 6.5 63 154-222 8-72 (184)
206 KOG4285 Mitotic phosphoprotein 93.7 0.23 5E-06 42.0 6.4 71 58-132 199-270 (350)
207 PF11767 SET_assoc: Histone ly 93.7 0.41 8.8E-06 31.1 6.2 55 273-335 11-65 (66)
208 PF11767 SET_assoc: Histone ly 93.6 0.45 9.8E-06 30.9 6.3 55 152-215 11-65 (66)
209 KOG4285 Mitotic phosphoprotein 93.5 0.32 6.9E-06 41.2 6.8 63 264-333 199-261 (350)
210 KOG0804 Cytoplasmic Zn-finger 93.2 0.45 9.7E-06 42.7 7.7 75 262-337 74-152 (493)
211 KOG2135 Proteins containing th 93.0 0.062 1.3E-06 48.2 2.1 75 56-133 372-447 (526)
212 PF10567 Nab6_mRNP_bdg: RNA-re 92.9 5.3 0.00012 34.1 13.1 173 139-321 13-212 (309)
213 PF07292 NID: Nmi/IFP 35 domai 91.9 0.23 5E-06 34.3 3.4 67 97-163 1-74 (88)
214 PF07292 NID: Nmi/IFP 35 domai 91.2 0.39 8.5E-06 33.1 3.9 73 186-284 1-74 (88)
215 PF10567 Nab6_mRNP_bdg: RNA-re 90.2 0.79 1.7E-05 38.8 5.6 159 47-206 6-214 (309)
216 KOG4410 5-formyltetrahydrofola 90.1 0.89 1.9E-05 38.2 5.8 52 259-311 327-378 (396)
217 PF03880 DbpA: DbpA RNA bindin 88.1 0.99 2.2E-05 30.1 4.0 59 66-129 11-74 (74)
218 KOG4019 Calcineurin-mediated s 88.1 0.84 1.8E-05 35.8 4.0 73 263-340 11-89 (193)
219 KOG2318 Uncharacterized conser 86.5 7.3 0.00016 36.5 9.6 130 53-220 171-307 (650)
220 KOG4410 5-formyltetrahydrofola 86.5 1.6 3.5E-05 36.7 5.1 54 52-106 326-379 (396)
221 KOG3878 Protein involved in ma 81.1 8.6 0.00019 33.3 7.3 55 66-132 301-368 (469)
222 KOG4369 RTK signaling protein 78.4 2 4.4E-05 43.5 3.2 23 265-287 2065-2087(2131)
223 KOG2318 Uncharacterized conser 78.1 19 0.00042 33.8 9.0 82 256-341 168-308 (650)
224 COG5624 TAF61 Transcription in 77.5 3.7 8E-05 36.5 4.2 11 276-286 460-470 (505)
225 PF02166 Androgen_recep: Andro 73.9 1 2.3E-05 38.8 0.0 14 70-83 152-165 (423)
226 TIGR02542 B_forsyth_147 Bacter 73.7 23 0.00049 25.7 6.6 112 64-193 11-129 (145)
227 PF14111 DUF4283: Domain of un 72.0 4.3 9.4E-05 31.3 3.1 106 67-174 28-138 (153)
228 PRK10629 EnvZ/OmpR regulon mod 70.0 36 0.00078 25.5 7.4 71 263-339 36-109 (127)
229 KOG4483 Uncharacterized conser 69.5 11 0.00024 33.6 5.2 55 55-112 390-445 (528)
230 PRK11901 hypothetical protein; 65.7 40 0.00087 29.5 7.7 60 53-116 242-306 (327)
231 KOG3702 Nuclear polyadenylated 65.3 11 0.00024 36.0 4.6 72 143-215 513-584 (681)
232 KOG2891 Surface glycoprotein [ 64.5 30 0.00066 29.3 6.6 33 142-174 150-194 (445)
233 KOG4407 Predicted Rho GTPase-a 63.4 3.1 6.7E-05 42.8 0.8 14 56-69 411-424 (1973)
234 KOG1151 Tousled-like protein k 63.3 3.4 7.4E-05 37.7 1.0 12 144-155 493-504 (775)
235 KOG4483 Uncharacterized conser 62.0 19 0.00041 32.2 5.2 55 141-202 391-446 (528)
236 PF03468 XS: XS domain; Inter 61.9 14 0.00031 27.1 3.9 54 264-317 10-74 (116)
237 KOG2891 Surface glycoprotein [ 60.5 5.6 0.00012 33.5 1.7 76 263-340 150-267 (445)
238 PRK10927 essential cell divisi 59.4 52 0.0011 28.7 7.3 62 56-121 247-311 (319)
239 KOG3982 Runt and related trans 59.0 18 0.00039 31.9 4.5 11 70-80 98-108 (475)
240 PF15513 DUF4651: Domain of un 56.9 23 0.00051 22.6 3.6 22 277-298 9-30 (62)
241 PRK14548 50S ribosomal protein 55.8 51 0.0011 22.6 5.5 56 59-114 23-81 (84)
242 PF14893 PNMA: PNMA 54.7 9 0.00019 33.9 2.1 53 54-106 16-74 (331)
243 PF03468 XS: XS domain; Inter 52.5 20 0.00042 26.4 3.3 49 58-107 10-69 (116)
244 PRK14548 50S ribosomal protein 51.4 48 0.001 22.8 4.8 54 265-319 23-80 (84)
245 KOG4019 Calcineurin-mediated s 50.5 39 0.00084 26.8 4.7 77 143-225 12-94 (193)
246 PF03249 TSA: Type specific an 49.7 9.7 0.00021 33.6 1.5 10 70-79 341-350 (503)
247 PF14111 DUF4283: Domain of un 49.7 15 0.00033 28.2 2.5 82 184-297 56-138 (153)
248 TIGR03636 L23_arch archaeal ri 48.5 82 0.0018 21.2 5.5 56 59-114 16-74 (77)
249 PF02714 DUF221: Domain of unk 47.3 41 0.00089 29.7 5.2 57 186-285 1-57 (325)
250 TIGR03636 L23_arch archaeal ri 47.0 66 0.0014 21.6 4.8 54 265-319 16-73 (77)
251 KOG1295 Nonsense-mediated deca 45.2 27 0.00059 31.2 3.5 64 56-119 7-77 (376)
252 PF07530 PRE_C2HC: Associated 44.9 42 0.00091 21.9 3.6 62 156-220 2-64 (68)
253 KOG2295 C2H2 Zn-finger protein 44.2 4.7 0.0001 37.5 -1.3 69 55-123 230-302 (648)
254 PF02714 DUF221: Domain of unk 42.3 55 0.0012 28.9 5.2 56 97-163 1-56 (325)
255 KOG4592 Uncharacterized conser 41.9 15 0.00033 34.8 1.6 10 53-62 230-239 (728)
256 smart00596 PRE_C2HC PRE_C2HC d 41.2 41 0.00089 22.0 3.0 61 156-219 2-63 (69)
257 PF08544 GHMP_kinases_C: GHMP 40.9 1.1E+02 0.0023 20.4 5.9 43 71-114 37-79 (85)
258 PF14893 PNMA: PNMA 39.9 21 0.00046 31.6 2.1 48 263-310 19-72 (331)
259 PF00403 HMA: Heavy-metal-asso 39.8 92 0.002 19.3 6.5 54 264-319 1-58 (62)
260 PF12829 Mhr1: Transcriptional 37.6 77 0.0017 22.1 4.1 52 269-321 19-72 (91)
261 KOG1295 Nonsense-mediated deca 37.5 38 0.00082 30.3 3.2 60 263-323 8-75 (376)
262 PF08734 GYD: GYD domain; Int 36.0 1.5E+02 0.0032 20.6 5.6 45 70-114 22-67 (91)
263 KOG2295 C2H2 Zn-finger protein 35.4 5.3 0.00012 37.1 -2.3 68 142-209 232-299 (648)
264 PF08544 GHMP_kinases_C: GHMP 33.2 1.5E+02 0.0032 19.7 5.9 42 277-321 37-80 (85)
265 COG0150 PurM Phosphoribosylami 31.6 24 0.00053 31.1 1.2 49 69-117 274-322 (345)
266 PF15053 Njmu-R1: Mjmu-R1-like 31.6 2.9E+02 0.0062 24.6 7.5 49 53-102 34-93 (353)
267 COG5638 Uncharacterized conser 30.6 3.2E+02 0.0069 24.9 7.7 40 257-297 141-184 (622)
268 PF03439 Spt5-NGN: Early trans 30.0 90 0.0019 21.3 3.6 34 82-116 33-66 (84)
269 COG5193 LHP1 La protein, small 29.5 30 0.00066 31.1 1.4 60 142-201 175-244 (438)
270 PF03439 Spt5-NGN: Early trans 29.1 1.2E+02 0.0026 20.7 4.0 34 290-323 33-67 (84)
271 KOG4213 RNA-binding protein La 27.8 84 0.0018 25.0 3.3 54 56-113 111-169 (205)
272 cd04908 ACT_Bt0572_1 N-termina 26.9 1.7E+02 0.0037 18.4 7.2 45 69-113 14-59 (66)
273 KOG1546 Metacaspase involved i 26.7 4.6E+02 0.0099 23.3 10.6 118 57-176 64-202 (362)
274 KOG4008 rRNA processing protei 26.2 67 0.0015 26.7 2.7 26 262-287 40-65 (261)
275 PF10281 Ish1: Putative stress 25.6 67 0.0015 18.0 1.9 17 67-83 3-19 (38)
276 COG3254 Uncharacterized conser 25.5 2.4E+02 0.0052 20.2 5.0 42 276-318 26-69 (105)
277 PF11823 DUF3343: Protein of u 25.0 1.1E+02 0.0024 20.0 3.2 23 301-323 2-24 (73)
278 PRK11901 hypothetical protein; 24.9 2.3E+02 0.005 25.0 5.8 58 263-323 246-307 (327)
279 PHA01632 hypothetical protein 24.5 78 0.0017 19.5 2.1 21 265-285 19-39 (64)
280 COG5193 LHP1 La protein, small 24.5 34 0.00074 30.8 0.8 56 263-318 175-244 (438)
281 PF09902 DUF2129: Uncharacteri 24.3 2.2E+02 0.0048 18.8 4.6 40 75-119 15-54 (71)
282 PRK10629 EnvZ/OmpR regulon mod 22.4 3.4E+02 0.0073 20.3 7.6 70 57-130 36-109 (127)
283 PF13721 SecD-TM1: SecD export 21.9 3E+02 0.0066 19.5 6.1 58 263-323 32-92 (101)
284 PRK02302 hypothetical protein; 21.3 2.8E+02 0.006 19.3 4.5 40 75-119 21-60 (89)
285 COG0030 KsgA Dimethyladenosine 20.7 1.5E+02 0.0032 25.4 3.9 45 57-113 96-140 (259)
286 cd04889 ACT_PDH-BS-like C-term 20.7 2.1E+02 0.0045 17.2 5.6 42 70-111 12-55 (56)
287 KOG2854 Possible pfkB family c 20.4 2.5E+02 0.0053 25.0 5.1 141 56-202 81-231 (343)
288 PF15407 Spo7_2_N: Sporulation 20.3 37 0.0008 22.1 0.2 25 54-78 25-49 (67)
289 KOG2187 tRNA uracil-5-methyltr 20.2 86 0.0019 29.6 2.5 71 265-338 28-98 (534)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=3.1e-46 Score=334.48 Aligned_cols=278 Identities=27% Similarity=0.444 Sum_probs=221.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecc
Q 019152 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (345)
Q Consensus 55 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (345)
+..+|||+|||.++++++|+++|+.||+|.+|+++.++ ++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 35789999999999999999999999999999999875 35899999999999999999999999999999999987
Q ss_pred ccCCCCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 019152 131 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210 (345)
Q Consensus 131 ~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~ 210 (345)
+... .....+|||+|||..+++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+|++.|+|..+.|
T Consensus 82 ~~~~---~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g 158 (352)
T TIGR01661 82 PSSD---SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSG 158 (352)
T ss_pred cccc---ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 6543 2234689999999999999999999999999999999887788999999999999999999999999998876
Q ss_pred --eeEEEEeccCCCCCCCCccCcc-------ccchhhcc-----------------------------------------
Q 019152 211 --RQIRCNWATKGAGNNEDKQSSD-------AKSVVELT----------------------------------------- 240 (345)
Q Consensus 211 --~~i~v~~~~~~~~~~~~~~~~~-------~~~~~~~~----------------------------------------- 240 (345)
..|.|.|+.............. ........
T Consensus 159 ~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (352)
T TIGR01661 159 CTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQ 238 (352)
T ss_pred CceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccc
Confidence 6788888765432111100000 00000000
Q ss_pred -----CCCCcCCcCC----CCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC------cceEEE
Q 019152 241 -----NGSSEDGKET----TNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFV 305 (345)
Q Consensus 241 -----~~~~~~~~~~----~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~------~~~afV 305 (345)
.......... .....+.....+++|||+|||..+++++|+++|++|| .|.++++.++ +|+|||
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG--~v~~v~i~~d~~t~~skG~aFV 316 (352)
T TIGR01661 239 HAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFG--AVQNVKIIRDLTTNQCKGYGFV 316 (352)
T ss_pred cccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCC--CeEEEEEeEcCCCCCccceEEE
Confidence 0000000000 0000111123345799999999999999999999999 7889988754 799999
Q ss_pred EeCCHHHHHHHHHhhCCCCccccCCceEEEeeccc
Q 019152 306 RYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCG 340 (345)
Q Consensus 306 ~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~ 340 (345)
+|.+.++|.+|+..|||. .++||.|+|+|..+
T Consensus 317 ~F~~~~~A~~Ai~~lnG~---~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 317 SMTNYDEAAMAILSLNGY---TLGNRVLQVSFKTN 348 (352)
T ss_pred EECCHHHHHHHHHHhCCC---EECCeEEEEEEccC
Confidence 999999999999999999 99999999999764
No 2
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.1e-42 Score=274.99 Aligned_cols=281 Identities=28% Similarity=0.422 Sum_probs=227.0
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCC----CeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS----SYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~----~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
....+.|.|.-||..+|+++|+.+|...|+|++|++++|+-+ ||+||.|.++++|++|+..|||..+..++|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 334456888889999999999999999999999999999854 7999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 019152 129 AYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 208 (345)
Q Consensus 129 ~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~ 208 (345)
+.+...... +.+|||++||+.++..||..+|++||.|..-+++.|..+|.++|.+||+|...++|++||+.|||..-
T Consensus 118 ARPSs~~Ik---~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P 194 (360)
T KOG0145|consen 118 ARPSSDSIK---DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKP 194 (360)
T ss_pred ccCChhhhc---ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCC
Confidence 988765433 34799999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C--CeeEEEEeccCCCCCCCCccCccc--cchhhccC-----------------------CCC---cCCcCCCCCCCCCC
Q 019152 209 G--SRQIRCNWATKGAGNNEDKQSSDA--KSVVELTN-----------------------GSS---EDGKETTNTEAPEN 258 (345)
Q Consensus 209 ~--~~~i~v~~~~~~~~~~~~~~~~~~--~~~~~~~~-----------------------~~~---~~~~~~~~~~~~~~ 258 (345)
. ..+|.|.|+............... .+...... .++ ...........+..
T Consensus 195 ~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~ 274 (360)
T KOG0145|consen 195 SGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGG 274 (360)
T ss_pred CCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCC
Confidence 4 467999998665432221100000 00000000 000 00000011112222
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC------cceEEEEeCCHHHHHHHHHhhCCCCccccCCce
Q 019152 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 332 (345)
Q Consensus 259 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~------~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~ 332 (345)
...+.+|||-||..+..|.-|+++|.+|| -|..|++.++ +|++||++.+.++|..|+..|||. .+++|.
T Consensus 275 ~~~g~ciFvYNLspd~de~~LWQlFgpFG--Av~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy---~lg~rv 349 (360)
T KOG0145|consen 275 PGGGWCIFVYNLSPDADESILWQLFGPFG--AVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGY---RLGDRV 349 (360)
T ss_pred CCCeeEEEEEecCCCchHhHHHHHhCccc--ceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCc---cccceE
Confidence 33458999999999999999999999999 6899999887 899999999999999999999999 999999
Q ss_pred EEEeecccc
Q 019152 333 MKHDAMCGT 341 (345)
Q Consensus 333 l~v~~~~~~ 341 (345)
|.|+|-.+.
T Consensus 350 LQVsFKtnk 358 (360)
T KOG0145|consen 350 LQVSFKTNK 358 (360)
T ss_pred EEEEEecCC
Confidence 999996543
No 3
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=3.5e-41 Score=310.73 Aligned_cols=280 Identities=18% Similarity=0.236 Sum_probs=218.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCC--CceEEeeccc
Q 019152 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFG--QPIKVNWAYA 131 (345)
Q Consensus 54 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~~~~ 131 (345)
....+|+|+||++.+|+++|+++|+.||.|.+|.++++..+++|||+|.+.++|.+|++.|||..|.| +.|+|.|+..
T Consensus 94 ~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~ 173 (481)
T TIGR01649 94 NKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKP 173 (481)
T ss_pred CceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecC
Confidence 34567999999999999999999999999999999888777899999999999999999999999975 4788877653
Q ss_pred cCC--------------------C-----------C--------------------------------------------
Q 019152 132 SGQ--------------------R-----------E-------------------------------------------- 136 (345)
Q Consensus 132 ~~~--------------------~-----------~-------------------------------------------- 136 (345)
..- + .
T Consensus 174 ~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (481)
T TIGR01649 174 TRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRP 253 (481)
T ss_pred CCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcc
Confidence 110 0 0
Q ss_pred -----------------CCCCceeEEECCCCc-cCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHH
Q 019152 137 -----------------DTSGHFNIFVGDLSP-EVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQS 198 (345)
Q Consensus 137 -----------------~~~~~~~l~v~~lp~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 198 (345)
...++.+|||+|||. .+++++|+++|+.||.|.++++++++ +|+|||+|.+.++|..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~ 328 (481)
T TIGR01649 254 AYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQL 328 (481)
T ss_pred cccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHH
Confidence 012446899999997 69999999999999999999999752 5899999999999999
Q ss_pred HHHHhCCceeCCeeEEEEeccCCCCCCCCccCccc--cchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCH
Q 019152 199 AINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDA--KSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQ 276 (345)
Q Consensus 199 a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~ 276 (345)
|+..|++..+.|+.|.|.++............... ............+.............+++++|||+|||.++++
T Consensus 329 Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~te 408 (481)
T TIGR01649 329 ALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSE 408 (481)
T ss_pred HHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCH
Confidence 99999999999999999998665432221100000 0000011100011111111111223467789999999999999
Q ss_pred HHHHHHhhhcCceeeEEEeeeCC----cceEEEEeCCHHHHHHHHHhhCCCCccccCCce------EEEeecccc
Q 019152 277 LDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ------MKHDAMCGT 341 (345)
Q Consensus 277 ~~L~~~f~~~G~~~i~~v~i~~~----~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~------l~v~~~~~~ 341 (345)
++|+++|+.||...+..+++... +++|||+|++.++|.+|+..|||+ .+.|+. |+|+|++..
T Consensus 409 e~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~---~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 409 EDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHH---QLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred HHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCC---ccCCCCCCccceEEEEeccCC
Confidence 99999999999435888888654 589999999999999999999999 899985 999999864
No 4
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=8.7e-41 Score=308.12 Aligned_cols=276 Identities=19% Similarity=0.214 Sum_probs=212.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHh--CCCccCCCceEEeecccc
Q 019152 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSL--NGRHLFGQPIKVNWAYAS 132 (345)
Q Consensus 55 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l--~~~~~~g~~l~v~~~~~~ 132 (345)
++++|||+|||.++++++|+++|+.||.|.+|.++++ +++|||+|.+.++|.+|+..+ ++..+.|+.|+|.|+..+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~--k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG--KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC--CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 4689999999999999999999999999999999865 479999999999999999864 788999999999998654
Q ss_pred CCCCC---------CCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 019152 133 GQRED---------TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203 (345)
Q Consensus 133 ~~~~~---------~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l 203 (345)
..... ...-.+|||+||+..+++++|+++|+.||.|.++.++++. .+++|||+|.+.++|.+|++.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~----~~~~afVef~~~~~A~~A~~~L 154 (481)
T TIGR01649 79 EIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN----NVFQALVEFESVNSAQHAKAAL 154 (481)
T ss_pred ccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----CceEEEEEECCHHHHHHHHHHh
Confidence 31111 1122479999999999999999999999999999988653 2468999999999999999999
Q ss_pred CCceeCC--eeEEEEeccCCCCCC---CCccCccccchh--------------hcc----------------CC----C-
Q 019152 204 TGKWLGS--RQIRCNWATKGAGNN---EDKQSSDAKSVV--------------ELT----------------NG----S- 243 (345)
Q Consensus 204 ~~~~~~~--~~i~v~~~~~~~~~~---~~~~~~~~~~~~--------------~~~----------------~~----~- 243 (345)
+|..+.+ +.|+|.|++.....- ..+...-..+.. ... .. .
T Consensus 155 ng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 234 (481)
T TIGR01649 155 NGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAP 234 (481)
T ss_pred cCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCc
Confidence 9999854 589999987643210 000000000000 000 00 0
Q ss_pred CcCCc--C----------------C----CCCCCCCCCCCcceEEEcCCCc-ccCHHHHHHHhhhcCceeeEEEeeeCC-
Q 019152 244 SEDGK--E----------------T----TNTEAPENNPQYTTVYVGNLAP-EVTQLDLHRHFHSLGAGVIEEVRVQRD- 299 (345)
Q Consensus 244 ~~~~~--~----------------~----~~~~~~~~~~~~~~l~V~nlp~-~~t~~~L~~~f~~~G~~~i~~v~i~~~- 299 (345)
..... . . .....+...+++++|||+|||. .+|+++|+++|+.|| .|..|++.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG--~V~~vki~~~~ 312 (481)
T TIGR01649 235 LAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYG--NVERVKFMKNK 312 (481)
T ss_pred ccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcC--CeEEEEEEeCC
Confidence 00000 0 0 0000111235678999999998 699999999999999 8999999876
Q ss_pred cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeecccc
Q 019152 300 KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCGT 341 (345)
Q Consensus 300 ~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~~ 341 (345)
+|+|||+|.+.++|.+|+..|||. .+.|++|+|+|++..
T Consensus 313 ~g~afV~f~~~~~A~~Ai~~lng~---~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 313 KETALIEMADPYQAQLALTHLNGV---KLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCEEEEEECCHHHHHHHHHHhCCC---EECCceEEEEEcccc
Confidence 699999999999999999999999 999999999998653
No 5
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=1.8e-40 Score=303.55 Aligned_cols=165 Identities=22% Similarity=0.413 Sum_probs=149.5
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccc
Q 019152 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (345)
Q Consensus 56 ~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (345)
.++|||+|||+++++++|+++|+.||+|.+|.++.++ ++|||||+|.+.++|.+|+..|||..+.|+.|+|.+...
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~ 186 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 186 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccccc
Confidence 4789999999999999999999999999999998874 579999999999999999999999999999999987543
Q ss_pred cCCC--------CCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 019152 132 SGQR--------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203 (345)
Q Consensus 132 ~~~~--------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l 203 (345)
.... ......++|||+|||.++++++|+++|+.||.|.++++.+++.++.++|||||+|.+.++|.+|+..|
T Consensus 187 ~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~am 266 (612)
T TIGR01645 187 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 266 (612)
T ss_pred ccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHh
Confidence 3211 11233468999999999999999999999999999999999888999999999999999999999999
Q ss_pred CCceeCCeeEEEEeccC
Q 019152 204 TGKWLGSRQIRCNWATK 220 (345)
Q Consensus 204 ~~~~~~~~~i~v~~~~~ 220 (345)
|+..++|+.|+|.++..
T Consensus 267 Ng~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 267 NLFDLGGQYLRVGKCVT 283 (612)
T ss_pred CCCeeCCeEEEEEecCC
Confidence 99999999999999765
No 6
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.2e-41 Score=286.66 Aligned_cols=243 Identities=24% Similarity=0.390 Sum_probs=213.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccC-CCceEEe
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLF-GQPIKVN 127 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~-g~~l~v~ 127 (345)
+...+-|||+.||.++.|++|..+|++-|+|.+++++.|+ ++|||||.|.+.+.|.+|++.||+..|. |+.|.|.
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 4556789999999999999999999999999999999984 5799999999999999999999999884 8999998
Q ss_pred eccccCCCCCCCCceeEEECCCCccCCHHHHHHHhccCCC-cceeEeeecCC-CCCcccEEEEEeCCHHHHHHHHHHhCC
Q 019152 128 WAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPS-CSDARVMWDQK-TGRSRGFGFVSFRNQQDAQSAINDLTG 205 (345)
Q Consensus 128 ~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~-v~~~~~~~~~~-~~~~~g~~fv~f~~~~~a~~a~~~l~~ 205 (345)
.+.. ++.|||+|||+++++++|.+.+++.++ |..|.+..++. ..+++|||||+|.+...|.-|.+.|-.
T Consensus 160 ~Sva---------n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~ 230 (506)
T KOG0117|consen 160 VSVA---------NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMP 230 (506)
T ss_pred Eeee---------cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccC
Confidence 7753 468999999999999999999999876 77776665543 358999999999999999999887754
Q ss_pred --ceeCCeeEEEEeccCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHh
Q 019152 206 --KWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHF 283 (345)
Q Consensus 206 --~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f 283 (345)
..+.|+.+.|.|+.+.....+... ...+.|||+||+.++|+|.|+++|
T Consensus 231 g~~klwgn~~tVdWAep~~e~ded~m------------------------------s~VKvLYVRNL~~~tTeE~lk~~F 280 (506)
T KOG0117|consen 231 GKIKLWGNAITVDWAEPEEEPDEDTM------------------------------SKVKVLYVRNLMESTTEETLKKLF 280 (506)
T ss_pred CceeecCCcceeeccCcccCCChhhh------------------------------hheeeeeeeccchhhhHHHHHHHH
Confidence 457899999999988765443321 122689999999999999999999
Q ss_pred hhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeecccc
Q 019152 284 HSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCGT 341 (345)
Q Consensus 284 ~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~~ 341 (345)
+.|| .|..|+.++| +|||.|.+.++|.+|++.+||+ .++|..|.|.+||..
T Consensus 281 ~~~G--~veRVkk~rD--YaFVHf~eR~davkAm~~~ngk---eldG~~iEvtLAKP~ 331 (506)
T KOG0117|consen 281 NEFG--KVERVKKPRD--YAFVHFAEREDAVKAMKETNGK---ELDGSPIEVTLAKPV 331 (506)
T ss_pred Hhcc--ceEEeecccc--eeEEeecchHHHHHHHHHhcCc---eecCceEEEEecCCh
Confidence 9999 8999999866 9999999999999999999999 999999999999864
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=3.1e-41 Score=318.89 Aligned_cols=246 Identities=30% Similarity=0.536 Sum_probs=214.9
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccccC
Q 019152 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASG 133 (345)
Q Consensus 58 ~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 133 (345)
+|||+|||.++||++|+++|+.||.|.+|++.++.. .|||||+|.+.++|.+|+..+++..+.|+.|+|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 699999999999999999999999999999998754 5899999999999999999999999999999999986443
Q ss_pred CCCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeE
Q 019152 134 QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213 (345)
Q Consensus 134 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i 213 (345)
... .....+|||+|||.++++++|+++|+.||.|.++++..+ .+|+++|||||+|.+.++|.+|++.+++..+.|+.|
T Consensus 82 ~~~-~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i 159 (562)
T TIGR01628 82 SLR-RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEV 159 (562)
T ss_pred ccc-ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhcccEecCceE
Confidence 322 223458999999999999999999999999999999988 578899999999999999999999999999999999
Q ss_pred EEEeccCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEE
Q 019152 214 RCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE 293 (345)
Q Consensus 214 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~ 293 (345)
.|.....+.... .......++|||+|||.++|+++|+++|+.|| .|.+
T Consensus 160 ~v~~~~~~~~~~------------------------------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG--~i~~ 207 (562)
T TIGR01628 160 YVGRFIKKHERE------------------------------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFG--EITS 207 (562)
T ss_pred EEeccccccccc------------------------------cccccCCCeEEEeCCCCcCCHHHHHHHHHhcC--CEEE
Confidence 997654432211 00111226799999999999999999999999 7888
Q ss_pred EeeeCC-----cceEEEEeCCHHHHHHHHHhhCCCCccccC----CceEEEeeccc
Q 019152 294 VRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLF----GKQMKHDAMCG 340 (345)
Q Consensus 294 v~i~~~-----~~~afV~f~~~~~A~~Al~~l~~~~~~~~~----g~~l~v~~~~~ 340 (345)
+.+.++ +|+|||+|.+.++|.+|++.|+|. .+. |+.|.|.+++.
T Consensus 208 ~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~---~i~~~~~g~~l~v~~a~~ 260 (562)
T TIGR01628 208 AAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGK---KIGLAKEGKKLYVGRAQK 260 (562)
T ss_pred EEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCc---EecccccceeeEeecccC
Confidence 888754 689999999999999999999999 898 99999988754
No 8
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=3.5e-41 Score=308.00 Aligned_cols=243 Identities=23% Similarity=0.370 Sum_probs=205.1
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC---CCCeEEEEEeCHHHHHHHHHHhCCCccC-CCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLF-GQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~~~~afv~f~~~~~A~~a~~~l~~~~~~-g~~l~v~~ 128 (345)
+...++|||+|||.+++|++|+++|+.||.|.+++++.|. ++|||||+|.+.++|.+|++.||+..+. |+.+.|.+
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 4456889999999999999999999999999999998873 4689999999999999999999998885 77777776
Q ss_pred ccccCCCCCCCCceeEEECCCCccCCHHHHHHHhccCCC-cceeEee-ecCCCCCcccEEEEEeCCHHHHHHHHHHhCC-
Q 019152 129 AYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPS-CSDARVM-WDQKTGRSRGFGFVSFRNQQDAQSAINDLTG- 205 (345)
Q Consensus 129 ~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~-v~~~~~~-~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~- 205 (345)
+. ..++|||+|||.++++++|.+.|+.++. +..+.+. .....++++|||||+|.+.++|..|++.|+.
T Consensus 135 S~---------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~g 205 (578)
T TIGR01648 135 SV---------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPG 205 (578)
T ss_pred cc---------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhcc
Confidence 53 2468999999999999999999999864 4444333 2223467899999999999999999988864
Q ss_pred -ceeCCeeEEEEeccCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhh
Q 019152 206 -KWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 284 (345)
Q Consensus 206 -~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~ 284 (345)
..+.|+.|.|.|+.+....... .....++|||+||+.++++++|+++|+
T Consensus 206 ki~l~Gr~I~VdwA~p~~~~d~~------------------------------~~~~~k~LfVgNL~~~~tee~L~~~F~ 255 (578)
T TIGR01648 206 RIQLWGHVIAVDWAEPEEEVDED------------------------------VMAKVKILYVRNLMTTTTEEIIEKSFS 255 (578)
T ss_pred ceEecCceEEEEeeccccccccc------------------------------ccccccEEEEeCCCCCCCHHHHHHHHH
Confidence 3578999999998764321110 011236899999999999999999999
Q ss_pred hc--CceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeecccc
Q 019152 285 SL--GAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCGT 341 (345)
Q Consensus 285 ~~--G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~~ 341 (345)
+| | .|..|++. +++|||+|++.++|.+|++.||+. .|+|+.|+|+|++..
T Consensus 256 ~f~~G--~I~rV~~~--rgfAFVeF~s~e~A~kAi~~lnG~---~i~Gr~I~V~~Akp~ 307 (578)
T TIGR01648 256 EFKPG--KVERVKKI--RDYAFVHFEDREDAVKAMDELNGK---ELEGSEIEVTLAKPV 307 (578)
T ss_pred hcCCC--ceEEEEee--cCeEEEEeCCHHHHHHHHHHhCCC---EECCEEEEEEEccCC
Confidence 99 8 88888877 469999999999999999999999 999999999999764
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=2.4e-41 Score=319.73 Aligned_cols=265 Identities=30% Similarity=0.465 Sum_probs=222.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC---CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
.....+|||+|||.++++++|+++|+.||.|.+|++..+. ++|||||+|.+.++|.+|+..+||..+.|+.+.|...
T Consensus 85 ~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~ 164 (562)
T TIGR01628 85 RSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRF 164 (562)
T ss_pred ccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecc
Confidence 3445679999999999999999999999999999998864 4689999999999999999999999999999999877
Q ss_pred cccCCCC--CCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 019152 130 YASGQRE--DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 207 (345)
Q Consensus 130 ~~~~~~~--~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~ 207 (345)
..+..+. .....++|||+|||.++++++|+++|+.||.|.++.+..+ .+|.++|||||+|.+.++|.+|++.|++..
T Consensus 165 ~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~-~~g~~~G~afV~F~~~e~A~~Av~~l~g~~ 243 (562)
T TIGR01628 165 IKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKD-GSGRSRGFAFVNFEKHEDAAKAVEEMNGKK 243 (562)
T ss_pred ccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEEC-CCCCcccEEEEEECCHHHHHHHHHHhCCcE
Confidence 6554442 3344568999999999999999999999999999999988 578899999999999999999999999999
Q ss_pred eC----CeeEEEEeccCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHh
Q 019152 208 LG----SRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHF 283 (345)
Q Consensus 208 ~~----~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f 283 (345)
+. |+.+.|.++..+.......... ..... .........++|||+||+..+++++|+++|
T Consensus 244 i~~~~~g~~l~v~~a~~k~er~~~~~~~----~~~~~-------------~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F 306 (562)
T TIGR01628 244 IGLAKEGKKLYVGRAQKRAEREAELRRK----FEELQ-------------QERKMKAQGVNLYVKNLDDTVTDEKLRELF 306 (562)
T ss_pred ecccccceeeEeecccChhhhHHHHHhh----HHhhh-------------hhhhcccCCCEEEEeCCCCccCHHHHHHHH
Confidence 99 9999998876554321110000 00000 000111234679999999999999999999
Q ss_pred hhcCceeeEEEeeeCC-----cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeeccc
Q 019152 284 HSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCG 340 (345)
Q Consensus 284 ~~~G~~~i~~v~i~~~-----~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~ 340 (345)
++|| .|.++++..+ +|+|||+|.+.++|.+|+..|||+ .++|++|.|.|+..
T Consensus 307 ~~~G--~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~---~~~gk~l~V~~a~~ 363 (562)
T TIGR01628 307 SECG--EITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGR---MLGGKPLYVALAQR 363 (562)
T ss_pred HhcC--CeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCC---eeCCceeEEEeccC
Confidence 9999 7899988754 699999999999999999999999 99999999999874
No 10
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.7e-42 Score=271.06 Aligned_cols=235 Identities=40% Similarity=0.677 Sum_probs=202.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecccc
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (345)
...+|||||+||..++||+-|..+|+..|+|.+++++.+ .++|.|+..+
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~-------------------------------e~~v~wa~~p 51 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD-------------------------------ELKVNWATAP 51 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh-------------------------------hhccccccCc
Confidence 456799999999999999999999999999999998876 5677777666
Q ss_pred CCCCCC--CCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 019152 133 GQREDT--SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210 (345)
Q Consensus 133 ~~~~~~--~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~ 210 (345)
...... .....+||+.|...++-++|++.|.+||+|.+.++++|..+++++||+||.|-+.++|+.||..|+|+++++
T Consensus 52 ~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~ 131 (321)
T KOG0148|consen 52 GNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGR 131 (321)
T ss_pred ccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeecc
Confidence 433322 224579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeccCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCcee
Q 019152 211 RQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGV 290 (345)
Q Consensus 211 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~ 290 (345)
|.|+-.|+..+......+ .....+ ......+.+++||++||+..+||++|++.|+.|| .
T Consensus 132 R~IRTNWATRKp~e~n~~----~ltfde---------------V~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG--~ 190 (321)
T KOG0148|consen 132 RTIRTNWATRKPSEMNGK----PLTFDE---------------VYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFG--P 190 (321)
T ss_pred ceeeccccccCccccCCC----CccHHH---------------HhccCCCCCceEEeCCcCccccHHHHHHhcccCC--c
Confidence 999999998876211111 111111 1112234558999999999999999999999999 8
Q ss_pred eEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeeccccc
Q 019152 291 IEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCGTL 342 (345)
Q Consensus 291 i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~~~ 342 (345)
|.+|++.+++|++||.|++.++|.+||-.+|+. .++|..++++|+|+..
T Consensus 191 I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNnt---ei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 191 IQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNT---EIGGQLVRCSWGKEGD 239 (321)
T ss_pred ceEEEEecccceEEEEecchhhHHHHHHHhcCc---eeCceEEEEeccccCC
Confidence 999999999999999999999999999999999 9999999999999875
No 11
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=4.6e-39 Score=297.65 Aligned_cols=284 Identities=24% Similarity=0.379 Sum_probs=219.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
....++|||+|||..+++++|+++|+.||.|.+|.++.++ .+|||||+|.+.++|.+|+ .|+|..+.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEee
Confidence 4457899999999999999999999999999999999875 3689999999999999999 4899999999999987
Q ss_pred ccccCCC---------CCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHH
Q 019152 129 AYASGQR---------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSA 199 (345)
Q Consensus 129 ~~~~~~~---------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 199 (345)
+...... .......+|||+|||..+++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|.+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A 244 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEA 244 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 6533211 1112357999999999999999999999999999999999988889999999999999999999
Q ss_pred HHHhCCceeCCeeEEEEeccCCCCCCCCccC-------------ccc-----------------cchhhccCC-------
Q 019152 200 INDLTGKWLGSRQIRCNWATKGAGNNEDKQS-------------SDA-----------------KSVVELTNG------- 242 (345)
Q Consensus 200 ~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~-------------~~~-----------------~~~~~~~~~------- 242 (345)
+..|+|..+.|+.|.|.|+............ ... .........
T Consensus 245 ~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (457)
T TIGR01622 245 LEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQK 324 (457)
T ss_pred HHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcc
Confidence 9999999999999999997532211000000 000 000000000
Q ss_pred CCcC--Cc--------------CCCCCCC--CCCCCCcceEEEcCCCcccC----------HHHHHHHhhhcCceeeEEE
Q 019152 243 SSED--GK--------------ETTNTEA--PENNPQYTTVYVGNLAPEVT----------QLDLHRHFHSLGAGVIEEV 294 (345)
Q Consensus 243 ~~~~--~~--------------~~~~~~~--~~~~~~~~~l~V~nlp~~~t----------~~~L~~~f~~~G~~~i~~v 294 (345)
.... .. ....... .....+.++|+|.||....+ .+||++.|++|| .|..|
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G--~v~~v 402 (457)
T TIGR01622 325 LQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYG--GVVHI 402 (457)
T ss_pred ccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcC--CeeEE
Confidence 0000 00 0000000 01234668999999965443 368999999999 78888
Q ss_pred eee--CCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeeccccc
Q 019152 295 RVQ--RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCGTL 342 (345)
Q Consensus 295 ~i~--~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~~~ 342 (345)
.+. ...|++||+|.+.++|.+|++.|||+ .|+|+.|.+.|..+..
T Consensus 403 ~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr---~f~gr~i~~~~~~~~~ 449 (457)
T TIGR01622 403 YVDTKNSAGKIYLKFSSVDAALAAFQALNGR---YFGGKMITAAFVVNDV 449 (457)
T ss_pred EEeCCCCceeEEEEECCHHHHHHHHHHhcCc---ccCCeEEEEEEEcHHH
Confidence 886 34799999999999999999999999 9999999999987654
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=2.4e-38 Score=296.91 Aligned_cols=275 Identities=17% Similarity=0.243 Sum_probs=211.7
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhcc------------CCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCcc
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSST------------GPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHL 119 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~------------G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~ 119 (345)
.....++|||+|||+.+|+++|.++|..+ +.|..+.+. +.+|||||+|.+.++|..|+ .|+|..|
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~--~~kg~afVeF~~~e~A~~Al-~l~g~~~ 247 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN--KEKNFAFLEFRTVEEATFAM-ALDSIIY 247 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC--CCCCEEEEEeCCHHHHhhhh-cCCCeEe
Confidence 35567899999999999999999999975 345555543 34689999999999999999 6999999
Q ss_pred CCCceEEeeccccCCC--------------------------CCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEe
Q 019152 120 FGQPIKVNWAYASGQR--------------------------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173 (345)
Q Consensus 120 ~g~~l~v~~~~~~~~~--------------------------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~ 173 (345)
.|+.|+|......... ......++|||+|||..+++++|+++|+.||.|..+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 9999999754322100 01123468999999999999999999999999999999
Q ss_pred eecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCCCCCCCCccCccccchhhccCCCCcCCcCCCCC
Q 019152 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNT 253 (345)
Q Consensus 174 ~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (345)
+.+..+|.++|||||+|.+.++|..|+..|+|..++|+.|.|.++..................... .. .....
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~ 400 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLL---AK----ALSQS 400 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccc---cc----cchhh
Confidence 999889999999999999999999999999999999999999998654322211111000000000 00 00000
Q ss_pred CCCCCCCCcceEEEcCCCcc--c--------CHHHHHHHhhhcCceeeEEEeeeCC---------cceEEEEeCCHHHHH
Q 019152 254 EAPENNPQYTTVYVGNLAPE--V--------TQLDLHRHFHSLGAGVIEEVRVQRD---------KGFGFVRYSTHAEAA 314 (345)
Q Consensus 254 ~~~~~~~~~~~l~V~nlp~~--~--------t~~~L~~~f~~~G~~~i~~v~i~~~---------~~~afV~f~~~~~A~ 314 (345)
.......+.++|+|.|+... + ..++|+++|++|| .|..|.|+++ .|+|||+|.+.++|.
T Consensus 401 ~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G--~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~ 478 (509)
T TIGR01642 401 ILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYG--PLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAE 478 (509)
T ss_pred hccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcC--CeeEEEeeccCcCCCcCCCcceEEEEECCHHHHH
Confidence 00112345689999999642 1 2367999999999 7999998754 488999999999999
Q ss_pred HHHHhhCCCCccccCCceEEEeecccc
Q 019152 315 LAIQMGNTTQSSYLFGKQMKHDAMCGT 341 (345)
Q Consensus 315 ~Al~~l~~~~~~~~~g~~l~v~~~~~~ 341 (345)
+|+..|||. .|+|+.|.|.|....
T Consensus 479 ~A~~~lnGr---~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 479 KAMEGMNGR---KFNDRVVVAAFYGED 502 (509)
T ss_pred HHHHHcCCC---EECCeEEEEEEeCHH
Confidence 999999999 999999999997653
No 13
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=7.1e-37 Score=258.20 Aligned_cols=283 Identities=24% Similarity=0.373 Sum_probs=220.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCC-CccCC--CceE
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNG-RHLFG--QPIK 125 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~-~~~~g--~~l~ 125 (345)
+.+.-++||+-||..|+|.||+++|++||.|.+|.+++|+. +|||||.|.+.++|.+|+.+|++ +.|.| .+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 35566799999999999999999999999999999999985 58999999999999999999977 55666 5777
Q ss_pred EeeccccCCCCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 019152 126 VNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG 205 (345)
Q Consensus 126 v~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~ 205 (345)
|+|+....+ .....++|||+.|++.++|.|++++|++||.|+++.|+++ ..+.+||||||.|.+.+.|..||+.||+
T Consensus 111 vk~Ad~E~e--r~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd-~~~~sRGcaFV~fstke~A~~Aika~ng 187 (510)
T KOG0144|consen 111 VKYADGERE--RIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRD-PDGLSRGCAFVKFSTKEMAVAAIKALNG 187 (510)
T ss_pred ecccchhhh--ccccchhhhhhhccccccHHHHHHHHHhhCccchhhheec-ccccccceeEEEEehHHHHHHHHHhhcc
Confidence 887754433 3345679999999999999999999999999999999999 6799999999999999999999999999
Q ss_pred ce-e--CCeeEEEEeccCCCCCCCCccCcc----------------cc--------------------------------
Q 019152 206 KW-L--GSRQIRCNWATKGAGNNEDKQSSD----------------AK-------------------------------- 234 (345)
Q Consensus 206 ~~-~--~~~~i~v~~~~~~~~~~~~~~~~~----------------~~-------------------------------- 234 (345)
.. + ...++.|+|++.++.+........ ..
T Consensus 188 ~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~ 267 (510)
T KOG0144|consen 188 TQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLG 267 (510)
T ss_pred ceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCC
Confidence 64 4 457899999988664322211000 00
Q ss_pred chh-----------------hccCCCCcC-----------C-c----------C-------C------------------
Q 019152 235 SVV-----------------ELTNGSSED-----------G-K----------E-------T------------------ 250 (345)
Q Consensus 235 ~~~-----------------~~~~~~~~~-----------~-~----------~-------~------------------ 250 (345)
... .....+... . . . .
T Consensus 268 ~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~ 347 (510)
T KOG0144|consen 268 PLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNL 347 (510)
T ss_pred CcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhccc
Confidence 000 000000000 0 0 0 0
Q ss_pred -----------------------------------------------------------------CCCCCCCCCCCcceE
Q 019152 251 -----------------------------------------------------------------TNTEAPENNPQYTTV 265 (345)
Q Consensus 251 -----------------------------------------------------------------~~~~~~~~~~~~~~l 265 (345)
.......+++.+..|
T Consensus 348 ~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanl 427 (510)
T KOG0144|consen 348 AGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANL 427 (510)
T ss_pred ccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccce
Confidence 000111445666799
Q ss_pred EEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC----cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeecccc
Q 019152 266 YVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCGT 341 (345)
Q Consensus 266 ~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~----~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~~ 341 (345)
||.+||-++-+.+|...|..||.+.-..+.|.+. +.|+||.|++..+|..||..|||. .+++++|+|...++.
T Consensus 428 fiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngf---Qig~KrlkVQlk~~~ 504 (510)
T KOG0144|consen 428 FIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGF---QIGSKRLKVQLKRDR 504 (510)
T ss_pred eeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcch---hhccccceEEeeecc
Confidence 9999999999999999999999655555666653 789999999999999999999999 999999999886653
No 14
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.3e-34 Score=251.10 Aligned_cols=279 Identities=23% Similarity=0.402 Sum_probs=213.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecccc
Q 019152 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (345)
Q Consensus 57 ~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (345)
.||||++||++++.++|.++|+.+|+|..+.++.++ .+||+||.|.-.+++.+|+...++..|.|+.|+|.++..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 789999999999999999999999999999998865 3699999999999999999999999999999999988654
Q ss_pred CCCC---------------------C--CCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEE
Q 019152 133 GQRE---------------------D--TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVS 189 (345)
Q Consensus 133 ~~~~---------------------~--~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~ 189 (345)
.... . ..+...|.|+|||..+...+|..+|+.||.|..+.|++. .+|+.+|||||.
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k-~dgklcGFaFV~ 164 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRK-KDGKLCGFAFVQ 164 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccC-CCCCccceEEEE
Confidence 3221 1 122568999999999999999999999999999999966 567777999999
Q ss_pred eCCHHHHHHHHHHhCCceeCCeeEEEEeccCCCCCCCCc-----------------c-Ccc-ccchh-hcc---------
Q 019152 190 FRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK-----------------Q-SSD-AKSVV-ELT--------- 240 (345)
Q Consensus 190 f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~-----------------~-~~~-~~~~~-~~~--------- 240 (345)
|....+|..|+..+|+..|+||+|.|.|+-.+....... . ..+ ..... ..+
T Consensus 165 fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe 244 (678)
T KOG0127|consen 165 FKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEE 244 (678)
T ss_pred EeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhccccccccccc
Confidence 999999999999999999999999999986654332210 0 000 00000 000
Q ss_pred -CC----------CCcCCcC------CCCCC---------CCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEE
Q 019152 241 -NG----------SSEDGKE------TTNTE---------APENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEV 294 (345)
Q Consensus 241 -~~----------~~~~~~~------~~~~~---------~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v 294 (345)
.. +...... +.... ........++|||+|||+++|+++|.+.|++|| .|.++
T Consensus 245 ~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG--~v~ya 322 (678)
T KOG0127|consen 245 TDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFG--EVKYA 322 (678)
T ss_pred ccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhc--cceeE
Confidence 00 0000000 00000 011112338999999999999999999999999 56666
Q ss_pred eee--C----CcceEEEEeCCHHHHHHHHHhhCCC--Cc-cccCCceEEEeec
Q 019152 295 RVQ--R----DKGFGFVRYSTHAEAALAIQMGNTT--QS-SYLFGKQMKHDAM 338 (345)
Q Consensus 295 ~i~--~----~~~~afV~f~~~~~A~~Al~~l~~~--~~-~~~~g~~l~v~~~ 338 (345)
.+. + ++|+|||.|.+..+|..||....-. +. ..+.||.|+|..+
T Consensus 323 ~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~A 375 (678)
T KOG0127|consen 323 IIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLA 375 (678)
T ss_pred EEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeec
Confidence 554 3 3799999999999999999876211 11 2688999999765
No 15
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-32 Score=240.27 Aligned_cols=236 Identities=29% Similarity=0.509 Sum_probs=207.2
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC-CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccccCCCC
Q 019152 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQRE 136 (345)
Q Consensus 58 ~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~-~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 136 (345)
.|||+ +++||.+|+++|+++|+|.++++.++.+ -|||||+|.++++|.+|+.++|...+.|+++++.|+.....
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~-- 77 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPS-- 77 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCc--
Confidence 58998 9999999999999999999999998872 28999999999999999999999999999999999975543
Q ss_pred CCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 019152 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (345)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~ 216 (345)
.+||.||+++++..+|.++|+.||.|.+|++..+. .| ++|| ||+|.+++.|.+|+..+||..+.|+.|.|.
T Consensus 78 ------~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg 148 (369)
T KOG0123|consen 78 ------LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVG 148 (369)
T ss_pred ------eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEe
Confidence 29999999999999999999999999999999984 45 8999 999999999999999999999999999998
Q ss_pred eccCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEee
Q 019152 217 WATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRV 296 (345)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i 296 (345)
....+..+...... . ....+.++|.|++.+++++.|.++|..+| .+..+.+
T Consensus 149 ~~~~~~er~~~~~~-~--------------------------~~~~t~v~vk~~~~~~~~~~l~~~f~~~g--~i~s~~v 199 (369)
T KOG0123|consen 149 LFERKEEREAPLGE-Y--------------------------KKRFTNVYVKNLEEDSTDEELKDLFSAYG--SITSVAV 199 (369)
T ss_pred eccchhhhcccccc-h--------------------------hhhhhhhheeccccccchHHHHHhhcccC--cceEEEE
Confidence 87665543322211 1 11125699999999999999999999999 7888888
Q ss_pred eCC-----cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeecc
Q 019152 297 QRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMC 339 (345)
Q Consensus 297 ~~~-----~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~ 339 (345)
.++ ++++||.|.+.++|..|+..|++. .++++.+.|.-+.
T Consensus 200 ~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~---~~~~~~~~V~~aq 244 (369)
T KOG0123|consen 200 MRDSIGKSKGFGFVNFENPEDAKKAVETLNGK---IFGDKELYVGRAQ 244 (369)
T ss_pred eecCCCCCCCccceeecChhHHHHHHHhccCC---cCCccceeecccc
Confidence 764 799999999999999999999999 8888888876543
No 16
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=4.1e-32 Score=237.07 Aligned_cols=168 Identities=25% Similarity=0.452 Sum_probs=152.1
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEe
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (345)
.....++|||+|||+++|+++|+++|+.||+|.+|+++.+.. +|||||+|.++++|.+|++.|++..+.++.|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 455678999999999999999999999999999999998753 5899999999999999999999999999999999
Q ss_pred eccccCCCCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 019152 128 WAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 207 (345)
Q Consensus 128 ~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~ 207 (345)
++.+... ....++|||+|||.++++++|+++|++||.|..+++++++.+++++++|||+|.+.++|++|++.|++..
T Consensus 183 ~a~p~~~---~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~ 259 (346)
T TIGR01659 183 YARPGGE---SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVI 259 (346)
T ss_pred ccccccc---ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCc
Confidence 9876432 2234689999999999999999999999999999999998899999999999999999999999999998
Q ss_pred eCC--eeEEEEeccCCC
Q 019152 208 LGS--RQIRCNWATKGA 222 (345)
Q Consensus 208 ~~~--~~i~v~~~~~~~ 222 (345)
+.+ +.|.|.++....
T Consensus 260 ~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 260 PEGGSQPLTVRLAEEHG 276 (346)
T ss_pred cCCCceeEEEEECCccc
Confidence 865 789999887643
No 17
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=6.5e-31 Score=217.81 Aligned_cols=162 Identities=22% Similarity=0.422 Sum_probs=146.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecccc
Q 019152 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (345)
Q Consensus 57 ~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (345)
|+|||+.|.+.+.|+.|+..|..||+|.+|.+..|. .+|||||+|.-+|.|..|++.+||..++|+.|+|.....-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 679999999999999999999999999999998875 4689999999999999999999999999999999865433
Q ss_pred CCC--------CCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 019152 133 GQR--------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT 204 (345)
Q Consensus 133 ~~~--------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 204 (345)
+.. ++...-+.+||..+.++++++||+..|+.||.|..|.+-+++..+.++||+|++|.+..+-..|+..||
T Consensus 194 pQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN 273 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN 273 (544)
T ss_pred cccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcc
Confidence 221 122334789999999999999999999999999999999998888999999999999999999999999
Q ss_pred CceeCCeeEEEEec
Q 019152 205 GKWLGSRQIRCNWA 218 (345)
Q Consensus 205 ~~~~~~~~i~v~~~ 218 (345)
-..++|..++|..+
T Consensus 274 lFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 274 LFDLGGQYLRVGKC 287 (544)
T ss_pred hhhcccceEecccc
Confidence 99999999999764
No 18
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.98 E-value=3.6e-31 Score=231.18 Aligned_cols=166 Identities=30% Similarity=0.455 Sum_probs=147.6
Q ss_pred CCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 019152 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (345)
Q Consensus 136 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v 215 (345)
......++|||++||.++++++|+++|+.||.|.+++++++..+++++|||||+|.++++|.+|++.|++..+.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 34456689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEe
Q 019152 216 NWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVR 295 (345)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~ 295 (345)
.|+.+.... ...++|||+|||..+|+++|+++|++|| .|..++
T Consensus 182 ~~a~p~~~~-----------------------------------~~~~~lfV~nLp~~vtee~L~~~F~~fG--~V~~v~ 224 (346)
T TIGR01659 182 SYARPGGES-----------------------------------IKDTNLYVTNLPRTITDDQLDTIFGKYG--QIVQKN 224 (346)
T ss_pred ecccccccc-----------------------------------cccceeEEeCCCCcccHHHHHHHHHhcC--CEEEEE
Confidence 997642110 0125799999999999999999999999 788888
Q ss_pred eeCC------cceEEEEeCCHHHHHHHHHhhCCCCccccCC--ceEEEeecccc
Q 019152 296 VQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG--KQMKHDAMCGT 341 (345)
Q Consensus 296 i~~~------~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g--~~l~v~~~~~~ 341 (345)
+.++ +++|||+|.+.++|.+|++.||+. .+.+ ++|+|.|+++.
T Consensus 225 i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~---~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 225 ILRDKLTGTPRGVAFVRFNKREEAQEAISALNNV---IPEGGSQPLTVRLAEEH 275 (346)
T ss_pred EeecCCCCccceEEEEEECCHHHHHHHHHHhCCC---ccCCCceeEEEEECCcc
Confidence 8765 589999999999999999999999 7755 79999999864
No 19
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=6.6e-31 Score=230.53 Aligned_cols=259 Identities=31% Similarity=0.469 Sum_probs=215.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC--CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccccCC
Q 019152 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQ 134 (345)
Q Consensus 57 ~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~--~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 134 (345)
..|||.||+++++..+|.++|+.||.|.+|++..+. .+|| ||+|.++++|.+|+..+||..+.|+.+.|.....+..
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 339999999999999999999999999999999876 4688 9999999999999999999999999999988876654
Q ss_pred CCCC-----CCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 019152 135 REDT-----SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (345)
Q Consensus 135 ~~~~-----~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~ 209 (345)
+... ..-..+++.+++.+.++.+|..+|..+|.|..+.++.+ ..|++++|+||.|.+.++|..|+..|++..+.
T Consensus 156 r~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~-~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~ 234 (369)
T KOG0123|consen 156 REAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRD-SIGKSKGFGFVNFENPEDAKKAVETLNGKIFG 234 (369)
T ss_pred hcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeec-CCCCCCCccceeecChhHHHHHHHhccCCcCC
Confidence 3322 22357999999999999999999999999999999988 56779999999999999999999999999999
Q ss_pred CeeEEEEeccCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCce
Q 019152 210 SRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAG 289 (345)
Q Consensus 210 ~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~ 289 (345)
+..+.|..+..+..........- . ..............|||.|++..++.+.|.++|+.||
T Consensus 235 ~~~~~V~~aqkk~e~~~~l~~~~-----------~------~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~G-- 295 (369)
T KOG0123|consen 235 DKELYVGRAQKKSEREAELKRKF-----------E------QEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFG-- 295 (369)
T ss_pred ccceeecccccchhhHHHHhhhh-----------H------hhhhhccccccccccccccCccccchhHHHHHHhccc--
Confidence 99999987765322111100000 0 0000011112335799999999999999999999999
Q ss_pred eeEEEeeeCC-----cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeecc
Q 019152 290 VIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMC 339 (345)
Q Consensus 290 ~i~~v~i~~~-----~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~ 339 (345)
.|..+++..+ +|++||.|.+.++|.+|+..+|+. .++++.+.|.++.
T Consensus 296 eI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~---~i~~k~l~vav~q 347 (369)
T KOG0123|consen 296 EITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGR---LIGGKPLYVAVAQ 347 (369)
T ss_pred ceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChh---hhcCCchhhhHHh
Confidence 7888887643 899999999999999999999999 9999999998865
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=2.2e-29 Score=230.90 Aligned_cols=171 Identities=24% Similarity=0.482 Sum_probs=146.1
Q ss_pred ceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 019152 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (345)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 220 (345)
.++|||+|||.++++++|+++|+.||.|.++++++++.+|+++|||||+|.+.++|.+|+..|+|..+.|+.|+|.+...
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~ 186 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 186 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccccc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999985432
Q ss_pred CCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC-
Q 019152 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD- 299 (345)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~- 299 (345)
........ ..........++|||+|||.++++++|+++|+.|| .|.++++.++
T Consensus 187 ~p~a~~~~------------------------~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG--~I~svrl~~D~ 240 (612)
T TIGR01645 187 MPQAQPII------------------------DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFG--EIVKCQLARAP 240 (612)
T ss_pred cccccccc------------------------ccccccccccceEEeecCCCCCCHHHHHHHHhhcC--CeeEEEEEecC
Confidence 11100000 00001112236899999999999999999999999 7999988753
Q ss_pred -----cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeeccc
Q 019152 300 -----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCG 340 (345)
Q Consensus 300 -----~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~ 340 (345)
+|||||+|.+.++|.+|+..||+. .++|+.|+|.++..
T Consensus 241 ~tgksKGfGFVeFe~~e~A~kAI~amNg~---elgGr~LrV~kAi~ 283 (612)
T TIGR01645 241 TGRGHKGYGFIEYNNLQSQSEAIASMNLF---DLGGQYLRVGKCVT 283 (612)
T ss_pred CCCCcCCeEEEEECCHHHHHHHHHHhCCC---eeCCeEEEEEecCC
Confidence 799999999999999999999999 99999999999874
No 21
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.97 E-value=3.6e-29 Score=224.32 Aligned_cols=255 Identities=22% Similarity=0.330 Sum_probs=207.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccccC
Q 019152 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASG 133 (345)
Q Consensus 54 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 133 (345)
...+.++|+|||..+..++|...|..||+|..+.+. +....|+|.|.++.+|+.|+..|.+..+...++.+.|++...
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dv 460 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDV 460 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecC--cccceeeeeecCccchHHHHHHhchhhhccCccccccChhhh
Confidence 345678999999999999999999999999998553 333369999999999999999999998888888777764211
Q ss_pred C-----------------------C-----------C-------------CCCCceeEEECCCCccCCHHHHHHHhccCC
Q 019152 134 Q-----------------------R-----------E-------------DTSGHFNIFVGDLSPEVTDATLFACFSVYP 166 (345)
Q Consensus 134 ~-----------------------~-----------~-------------~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g 166 (345)
- + . .....+.||+.||+.+.+.+++...|...|
T Consensus 461 f~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G 540 (725)
T KOG0110|consen 461 FTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQG 540 (725)
T ss_pred ccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcC
Confidence 0 0 0 001113499999999999999999999999
Q ss_pred CcceeEeeecCCC---CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCCCCCCCCccCccccchhhccCCC
Q 019152 167 SCSDARVMWDQKT---GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGS 243 (345)
Q Consensus 167 ~v~~~~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (345)
.|.++.|...+.. -.+.|||||+|.+.++|..|++.|+|..+.|+.|.|.++..+......+.
T Consensus 541 ~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~-------------- 606 (725)
T KOG0110|consen 541 TVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKK-------------- 606 (725)
T ss_pred eEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccc--------------
Confidence 9999977644321 13559999999999999999999999999999999999872221111100
Q ss_pred CcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC------cceEEEEeCCHHHHHHHH
Q 019152 244 SEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAI 317 (345)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~------~~~afV~f~~~~~A~~Al 317 (345)
......++.|+|+|||+..+..+++.+|..|| .+.+|+|++. +|+|||+|-+..+|.+|+
T Consensus 607 ------------~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFG--qlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~ 672 (725)
T KOG0110|consen 607 ------------KSKKKKGTKILVRNIPFEATKREVRKLFTAFG--QLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAF 672 (725)
T ss_pred ------------cccccccceeeeeccchHHHHHHHHHHHhccc--ceeeeccchhhcchhhccceeeeccCcHHHHHHH
Confidence 00111246899999999999999999999999 8999999865 899999999999999999
Q ss_pred HhhCCCCccccCCceEEEeecccc
Q 019152 318 QMGNTTQSSYLFGKQMKHDAMCGT 341 (345)
Q Consensus 318 ~~l~~~~~~~~~g~~l~v~~~~~~ 341 (345)
+.|.+. -+.||+|.+.|+++.
T Consensus 673 ~al~ST---HlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 673 DALGST---HLYGRRLVLEWAKSD 693 (725)
T ss_pred Hhhccc---ceechhhheehhccc
Confidence 999988 899999999999864
No 22
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.96 E-value=1.4e-27 Score=200.76 Aligned_cols=282 Identities=21% Similarity=0.322 Sum_probs=232.5
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCC--CceEEeec
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFG--QPIKVNWA 129 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~~ 129 (345)
.+++-.++.|.++-+.+|-|-|+.+|++||.|..|.-..+...-.|+|+|.+.+.|..|..+|+|..|.. ++|+|.|+
T Consensus 146 ~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~S 225 (492)
T KOG1190|consen 146 GPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFS 225 (492)
T ss_pred CCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehh
Confidence 4666778899999999999999999999999998877766666689999999999999999999998865 45555544
Q ss_pred c----------ccCC------------------------------------------------C--CCCCCceeEEECCC
Q 019152 130 Y----------ASGQ------------------------------------------------R--EDTSGHFNIFVGDL 149 (345)
Q Consensus 130 ~----------~~~~------------------------------------------------~--~~~~~~~~l~v~~l 149 (345)
. .+++ . .....+..|.|.||
T Consensus 226 klt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnl 305 (492)
T KOG1190|consen 226 KLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNL 305 (492)
T ss_pred hcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecC
Confidence 2 1110 0 00011467888888
Q ss_pred Cc-cCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCCCCCCCCc
Q 019152 150 SP-EVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDK 228 (345)
Q Consensus 150 p~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~ 228 (345)
.. .+|.+-|..+|.-||+|.+|++++++++ -|.|+|.+...|.-|+..|+|..+.|+.|+|.+++.........
T Consensus 306 n~~~VT~d~LftlFgvYGdVqRVkil~nkkd-----~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~e 380 (492)
T KOG1190|consen 306 NEEAVTPDVLFTLFGVYGDVQRVKILYNKKD-----NALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPRE 380 (492)
T ss_pred chhccchhHHHHHHhhhcceEEEEeeecCCc-----ceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCC
Confidence 74 5899999999999999999999987553 49999999999999999999999999999999998887776666
Q ss_pred cCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEE-eeeCCcceEEEEe
Q 019152 229 QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEV-RVQRDKGFGFVRY 307 (345)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v-~i~~~~~~afV~f 307 (345)
...+.+-...+......+...++........|++.+|++.|+|.++++++|+..|...|+ .+... ...+++.+|.+.+
T Consensus 381 gq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~-~vkafkff~kd~kmal~q~ 459 (492)
T KOG1190|consen 381 GQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGG-QVKAFKFFQKDRKMALPQL 459 (492)
T ss_pred CCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCc-eEEeeeecCCCcceeeccc
Confidence 666656566666677777777777777788899999999999999999999999999995 44444 4456789999999
Q ss_pred CCHHHHHHHHHhhCCCCccccCC-ceEEEeeccccc
Q 019152 308 STHAEAALAIQMGNTTQSSYLFG-KQMKHDAMCGTL 342 (345)
Q Consensus 308 ~~~~~A~~Al~~l~~~~~~~~~g-~~l~v~~~~~~~ 342 (345)
.+.++|..|+-.++++ .+++ ..|+|+|+|.+.
T Consensus 460 ~sveeA~~ali~~hnh---~lgen~hlRvSFSks~i 492 (492)
T KOG1190|consen 460 ESVEEAIQALIDLHNH---YLGENHHLRVSFSKSTI 492 (492)
T ss_pred CChhHhhhhccccccc---cCCCCceEEEEeecccC
Confidence 9999999999999998 7775 599999999763
No 23
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.2e-28 Score=196.59 Aligned_cols=165 Identities=27% Similarity=0.575 Sum_probs=150.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 54 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
+.+--|+|+.|...++.++|++.|.+||+|.+.++++|. ++||+||.|.+.++|+.||..+||..|.+|.|+-+|+
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 336679999999999999999999999999999999985 5699999999999999999999999999999999999
Q ss_pred cccCCC-------------CCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHH
Q 019152 130 YASGQR-------------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDA 196 (345)
Q Consensus 130 ~~~~~~-------------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a 196 (345)
..+... ...+++++||++|++..+++++|++.|++||.|.+|++..+ +||+||+|.+.|+|
T Consensus 140 TRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaA 213 (321)
T KOG0148|consen 140 TRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAA 213 (321)
T ss_pred ccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhH
Confidence 887632 23466789999999999999999999999999999999955 68999999999999
Q ss_pred HHHHHHhCCceeCCeeEEEEeccCCCCC
Q 019152 197 QSAINDLTGKWLGSRQIRCNWATKGAGN 224 (345)
Q Consensus 197 ~~a~~~l~~~~~~~~~i~v~~~~~~~~~ 224 (345)
..||-.+|+..+.|..+++.|.+.....
T Consensus 214 ahAIv~mNntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 214 AHAIVQMNNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred HHHHHHhcCceeCceEEEEeccccCCCC
Confidence 9999999999999999999998765543
No 24
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.96 E-value=4e-29 Score=218.21 Aligned_cols=284 Identities=23% Similarity=0.367 Sum_probs=217.3
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEE
Q 019152 51 FDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (345)
Q Consensus 51 ~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (345)
......++|++.-|+..+++.+|.+||+.+|.|..|.++.|+ ++|.|||+|.+.++.-.|+ .|.|..+.|.+|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEe
Confidence 345667889999999999999999999999999999999986 4689999999999999998 79999999999999
Q ss_pred eeccccCCC-----------CCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHH
Q 019152 127 NWAYASGQR-----------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQD 195 (345)
Q Consensus 127 ~~~~~~~~~-----------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~ 195 (345)
......... .-..+-..|||+||..++++++|+.+|++||.|+.|.+..|..+|.++||+|++|.+.++
T Consensus 253 q~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 253 QLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred cccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 866432211 001122239999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHhCCceeCCeeEEEEeccCCCCCCCC---ccCcc-----------cc------chhhccCCC------------
Q 019152 196 AQSAINDLTGKWLGSRQIRCNWATKGAGNNED---KQSSD-----------AK------SVVELTNGS------------ 243 (345)
Q Consensus 196 a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~---~~~~~-----------~~------~~~~~~~~~------------ 243 (345)
|.+|+..|||..+.|+.|+|............ ....+ .+ ...+.....
T Consensus 333 ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~ 412 (549)
T KOG0147|consen 333 ARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLL 412 (549)
T ss_pred HHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhc
Confidence 99999999999999999999875433222111 00000 00 000000000
Q ss_pred -------CcCC-----cCCCCCCCCCCCCCcceEEEcCCCcccC----------HHHHHHHhhhcCceeeEEEeeeCCc-
Q 019152 244 -------SEDG-----KETTNTEAPENNPQYTTVYVGNLAPEVT----------QLDLHRHFHSLGAGVIEEVRVQRDK- 300 (345)
Q Consensus 244 -------~~~~-----~~~~~~~~~~~~~~~~~l~V~nlp~~~t----------~~~L~~~f~~~G~~~i~~v~i~~~~- 300 (345)
.... ........|....++.++.+.|+=...| .+|+.+.+.+|| .|..|.+.+..
T Consensus 413 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g--~v~hi~vd~ns~ 490 (549)
T KOG0147|consen 413 AKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHG--KVCHIFVDKNSA 490 (549)
T ss_pred cccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcC--CeeEEEEccCCC
Confidence 0000 0000001222336678899999844332 267888999999 89999998875
Q ss_pred ceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeeccc
Q 019152 301 GFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCG 340 (345)
Q Consensus 301 ~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~ 340 (345)
|+.||.|.+.+.|..|+.+|||. +|.||-|+..|..-
T Consensus 491 g~VYvrc~s~~~A~~a~~alhgr---WF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 491 GCVYVRCPSAEAAGTAVKALHGR---WFAGRMITAKYLPL 527 (549)
T ss_pred ceEEEecCcHHHHHHHHHHHhhh---hhccceeEEEEeeh
Confidence 99999999999999999999999 99999999998654
No 25
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=3e-28 Score=218.28 Aligned_cols=161 Identities=28% Similarity=0.452 Sum_probs=143.6
Q ss_pred ceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 019152 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (345)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 220 (345)
.++|||+|||.++++++|+++|+.||.|.++++++++.+|+++|||||+|.+.++|.+|+..|++..+.|+.|.|.|+.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~ 82 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP 82 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence 56999999999999999999999999999999999988999999999999999999999999999999999999999865
Q ss_pred CCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC-
Q 019152 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD- 299 (345)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~- 299 (345)
.... ...++|||+|||..+++++|+++|++|| .+..+.+..+
T Consensus 83 ~~~~-----------------------------------~~~~~l~v~~l~~~~~~~~l~~~f~~~G--~i~~~~~~~~~ 125 (352)
T TIGR01661 83 SSDS-----------------------------------IKGANLYVSGLPKTMTQHELESIFSPFG--QIITSRILSDN 125 (352)
T ss_pred cccc-----------------------------------cccceEEECCccccCCHHHHHHHHhccC--CEEEEEEEecC
Confidence 3210 0125799999999999999999999999 7777777543
Q ss_pred -----cceEEEEeCCHHHHHHHHHhhCCCCccccCC--ceEEEeecccc
Q 019152 300 -----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG--KQMKHDAMCGT 341 (345)
Q Consensus 300 -----~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g--~~l~v~~~~~~ 341 (345)
+|+|||+|.+.++|.+|++.|||. .+.| ++|.|.|+...
T Consensus 126 ~~~~~~g~~fv~f~~~~~A~~ai~~l~g~---~~~g~~~~i~v~~a~~~ 171 (352)
T TIGR01661 126 VTGLSKGVGFIRFDKRDEADRAIKTLNGT---TPSGCTEPITVKFANNP 171 (352)
T ss_pred CCCCcCcEEEEEECCHHHHHHHHHHhCCC---ccCCCceeEEEEECCCC
Confidence 789999999999999999999999 7766 67899998643
No 26
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=9e-29 Score=209.36 Aligned_cols=165 Identities=25% Similarity=0.402 Sum_probs=146.0
Q ss_pred CCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce-e--CCeeEEE
Q 019152 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW-L--GSRQIRC 215 (345)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~-~--~~~~i~v 215 (345)
.+.-++||+-+|..|+|.||+++|++||.|.+|.+++|+.++.++|||||.|.+.++|.+|+.+|++.. + ...+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 444689999999999999999999999999999999999999999999999999999999999999865 4 3578999
Q ss_pred EeccCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEe
Q 019152 216 NWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVR 295 (345)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~ 295 (345)
+|++...++.... +.|||+-|+..+||++++++|++|| .|++|.
T Consensus 112 k~Ad~E~er~~~e----------------------------------~KLFvg~lsK~~te~evr~iFs~fG--~Ied~~ 155 (510)
T KOG0144|consen 112 KYADGERERIVEE----------------------------------RKLFVGMLSKQCTENEVREIFSRFG--HIEDCY 155 (510)
T ss_pred cccchhhhccccc----------------------------------hhhhhhhccccccHHHHHHHHHhhC--ccchhh
Confidence 9987765443111 5799999999999999999999999 899999
Q ss_pred eeCC-----cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeecc
Q 019152 296 VQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMC 339 (345)
Q Consensus 296 i~~~-----~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~ 339 (345)
|.++ ||||||+|.+.+-|..|++.|||...++=+..+|.|.||.
T Consensus 156 ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFAD 204 (510)
T KOG0144|consen 156 ILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFAD 204 (510)
T ss_pred heecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecc
Confidence 9986 8999999999999999999999995433445789999985
No 27
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.6e-27 Score=207.39 Aligned_cols=264 Identities=24% Similarity=0.410 Sum_probs=193.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC---CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecccc
Q 019152 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (345)
Q Consensus 56 ~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~---~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (345)
.-+|.|+|||+.+.+.+|..+|+.||.|.+|.|.+.+. .|||||+|....+|..|+..+|+..|.|++|-|-|+.++
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 45699999999999999999999999999999986543 389999999999999999999999999999999998553
Q ss_pred CC------------------------------------------------------------------------------
Q 019152 133 GQ------------------------------------------------------------------------------ 134 (345)
Q Consensus 133 ~~------------------------------------------------------------------------------ 134 (345)
..
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 20
Q ss_pred ---------CCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHh--
Q 019152 135 ---------REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL-- 203 (345)
Q Consensus 135 ---------~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l-- 203 (345)
+.+..-..+|||+|||.++++++|.+.|+.||.|..+.++.++.++.++|.|||.|.+..+|..||...
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Asp 356 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASP 356 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCc
Confidence 000011268999999999999999999999999999999999999999999999999999999999876
Q ss_pred ---CC-ceeCCeeEEEEeccCCCCCCCC------ccCccccchhhccCCCC-cCCcC--------------------CCC
Q 019152 204 ---TG-KWLGSRQIRCNWATKGAGNNED------KQSSDAKSVVELTNGSS-EDGKE--------------------TTN 252 (345)
Q Consensus 204 ---~~-~~~~~~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~--------------------~~~ 252 (345)
.+ ..+.||-+.|..+......... +...... .+....... ..+.+ ..-
T Consensus 357 a~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkr-NLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~k~ 435 (678)
T KOG0127|consen 357 ASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKR-NLYLAREGLIRDGTPAAEGLSATDMAKRERIAERKRKK 435 (678)
T ss_pred cCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCcc-ceeeeccCccccCChhhcccchhhHHHHHHHHHHHHHh
Confidence 23 5678999999987654422111 0000000 000000000 00000 000
Q ss_pred CCCCCCCCCcceEEEcCCCcccCHHHHHHHhhh----cCceeeEEEeeeC---------CcceEEEEeCCHHHHHHHHHh
Q 019152 253 TEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHS----LGAGVIEEVRVQR---------DKGFGFVRYSTHAEAALAIQM 319 (345)
Q Consensus 253 ~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~----~G~~~i~~v~i~~---------~~~~afV~f~~~~~A~~Al~~ 319 (345)
...+......+.|.|.|||..+++..|..+... |-......++... +.|++|+.|..++.|.+|+..
T Consensus 436 lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalkalk~ 515 (678)
T KOG0127|consen 436 LKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKALKV 515 (678)
T ss_pred hcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHHHHhhhc
Confidence 123344445578999999999999988876542 2111222222221 279999999999999999865
Q ss_pred h
Q 019152 320 G 320 (345)
Q Consensus 320 l 320 (345)
+
T Consensus 516 ~ 516 (678)
T KOG0127|consen 516 L 516 (678)
T ss_pred c
Confidence 4
No 28
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.95 E-value=4.7e-27 Score=215.44 Aligned_cols=195 Identities=21% Similarity=0.359 Sum_probs=159.0
Q ss_pred CHHHHHHHHHHhCCCccCCCceEEeeccccCCCC--CCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCC
Q 019152 103 DRRSAAMAILSLNGRHLFGQPIKVNWAYASGQRE--DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTG 180 (345)
Q Consensus 103 ~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~--~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~ 180 (345)
-.++|.+|+..++|..+........+..+...+. .....++|||+|||.++++++|+++|+.||.|.++++++| .+|
T Consensus 18 ~~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG 96 (578)
T TIGR01648 18 PDEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSG 96 (578)
T ss_pred ccHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCC
Confidence 4678999999899988877666666664443322 2334579999999999999999999999999999999999 789
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCceeC-CeeEEEEeccCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCC
Q 019152 181 RSRGFGFVSFRNQQDAQSAINDLTGKWLG-SRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENN 259 (345)
Q Consensus 181 ~~~g~~fv~f~~~~~a~~a~~~l~~~~~~-~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (345)
+++|||||+|.+.++|.+|++.|++..+. |+.+.|.++..
T Consensus 97 ~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~--------------------------------------- 137 (578)
T TIGR01648 97 QNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD--------------------------------------- 137 (578)
T ss_pred CccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc---------------------------------------
Confidence 99999999999999999999999998874 67766655421
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeee------CCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceE
Q 019152 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ------RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (345)
Q Consensus 260 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~------~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l 333 (345)
.++|||+|||.++++++|.+.|++++...+..+.+. +++++|||+|++.++|.+|+..|+...+ .+.|+.|
T Consensus 138 --~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki-~l~Gr~I 214 (578)
T TIGR01648 138 --NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRI-QLWGHVI 214 (578)
T ss_pred --CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccce-EecCceE
Confidence 168999999999999999999999863233333322 3479999999999999999988865422 5789999
Q ss_pred EEeeccc
Q 019152 334 KHDAMCG 340 (345)
Q Consensus 334 ~v~~~~~ 340 (345)
.|+|+..
T Consensus 215 ~VdwA~p 221 (578)
T TIGR01648 215 AVDWAEP 221 (578)
T ss_pred EEEeecc
Confidence 9999875
No 29
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=1.5e-26 Score=214.32 Aligned_cols=173 Identities=27% Similarity=0.464 Sum_probs=146.6
Q ss_pred CCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 019152 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (345)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 218 (345)
...++|||+|||..+++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|+. |+|..+.|++|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 345799999999999999999999999999999999998899999999999999999999996 8999999999999876
Q ss_pred cCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeC
Q 019152 219 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR 298 (345)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~ 298 (345)
............ ......+..++|||+|||..+++++|+++|++|| .|..|.+..
T Consensus 166 ~~~~~~~~~~~~-----------------------~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G--~i~~v~~~~ 220 (457)
T TIGR01622 166 QAEKNRAAKAAT-----------------------HQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFG--DIEDVQLHR 220 (457)
T ss_pred chhhhhhhhccc-----------------------ccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcC--CeEEEEEEE
Confidence 433211100000 0000112258999999999999999999999999 788888874
Q ss_pred ------CcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeeccc
Q 019152 299 ------DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCG 340 (345)
Q Consensus 299 ------~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~ 340 (345)
.+|+|||+|.+.++|.+|+..|+|. .+.|++|+|.|+.+
T Consensus 221 d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~---~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 221 DPETGRSKGFGFIQFHDAEEAKEALEVMNGF---ELAGRPIKVGYAQD 265 (457)
T ss_pred cCCCCccceEEEEEECCHHHHHHHHHhcCCc---EECCEEEEEEEccC
Confidence 3689999999999999999999999 99999999999764
No 30
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.95 E-value=9e-27 Score=175.38 Aligned_cols=169 Identities=33% Similarity=0.608 Sum_probs=151.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecc
Q 019152 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (345)
Q Consensus 55 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (345)
...||||+||+..++++-|+++|-+.|+|.++.+.+++ .+||||++|.++++|.-|++-||...+.|++|+|+.+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 34689999999999999999999999999999998876 46999999999999999999999999999999999987
Q ss_pred ccCCCCCCCCceeEEECCCCccCCHHHHHHHhccCCCcce-eEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 019152 131 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD-ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (345)
Q Consensus 131 ~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~ 209 (345)
. .......+.++||+||.+.+++.-|.+.|+.||.+.. -.++++..+|.+++++|+.|.+.+.+.+|+..++++.+.
T Consensus 88 ~--~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~ 165 (203)
T KOG0131|consen 88 A--HQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLC 165 (203)
T ss_pred c--ccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhc
Confidence 2 2233344478999999999999999999999998655 478889889999999999999999999999999999999
Q ss_pred CeeEEEEeccCCCCCC
Q 019152 210 SRQIRCNWATKGAGNN 225 (345)
Q Consensus 210 ~~~i~v~~~~~~~~~~ 225 (345)
++++.|.++..+....
T Consensus 166 nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 166 NRPITVSYAFKKDTKG 181 (203)
T ss_pred CCceEEEEEEecCCCc
Confidence 9999999997765544
No 31
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=5.6e-26 Score=180.34 Aligned_cols=166 Identities=27% Similarity=0.430 Sum_probs=146.5
Q ss_pred CCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 019152 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (345)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~ 217 (345)
....++|.|.-||..++++|++.+|...|+|+++++++|+.+|.+.||+||.|-++++|++|+..|||..+-.+.|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeee
Q 019152 218 ATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ 297 (345)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~ 297 (345)
+.+....... ..|||.+||..+|..+|.++|++|| .|..-+|+
T Consensus 118 ARPSs~~Ik~-----------------------------------aNLYvSGlPktMtqkelE~iFs~fG--rIItSRiL 160 (360)
T KOG0145|consen 118 ARPSSDSIKD-----------------------------------ANLYVSGLPKTMTQKELEQIFSPFG--RIITSRIL 160 (360)
T ss_pred ccCChhhhcc-----------------------------------cceEEecCCccchHHHHHHHHHHhh--hhhhhhhh
Confidence 9876433211 4699999999999999999999999 56666665
Q ss_pred CC------cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeecccc
Q 019152 298 RD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCGT 341 (345)
Q Consensus 298 ~~------~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~~ 341 (345)
.+ ||.+||.|+...+|..|+..|||... .=.-.+|.|.|+-++
T Consensus 161 ~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P-~g~tepItVKFannP 209 (360)
T KOG0145|consen 161 VDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKP-SGCTEPITVKFANNP 209 (360)
T ss_pred hhcccceecceeEEEecchhHHHHHHHhccCCCC-CCCCCCeEEEecCCc
Confidence 44 89999999999999999999999921 344578999998765
No 32
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=2.9e-25 Score=189.03 Aligned_cols=193 Identities=22% Similarity=0.347 Sum_probs=158.5
Q ss_pred EEeCHHHHHHHHHHhCCCccCCCceEEeecc-------ccCCCCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeE
Q 019152 100 HYFDRRSAAMAILSLNGRHLFGQPIKVNWAY-------ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 172 (345)
Q Consensus 100 ~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~-------~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~ 172 (345)
...+.++|.++|..-.|..+ .|.-.. +........-.+-|||+.||.++.|++|.-+|++.|.|-+++
T Consensus 40 ~~~~~eaal~al~E~tgy~l-----~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elR 114 (506)
T KOG0117|consen 40 GVQSEEAALKALLERTGYTL-----VVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELR 114 (506)
T ss_pred ccccHHHHHHHHHHhcCceE-----EEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEE
Confidence 34557888888876555433 333221 112223335567899999999999999999999999999999
Q ss_pred eeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee-CCeeEEEEeccCCCCCCCCccCccccchhhccCCCCcCCcCCC
Q 019152 173 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL-GSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETT 251 (345)
Q Consensus 173 ~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~-~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (345)
++.|+-+|.++|||||.|.+.+.|.+|++.||+..| .|+.|.|+.+...
T Consensus 115 LMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan------------------------------ 164 (506)
T KOG0117|consen 115 LMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVAN------------------------------ 164 (506)
T ss_pred EeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeec------------------------------
Confidence 999999999999999999999999999999999988 6999999987553
Q ss_pred CCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeee-------CCcceEEEEeCCHHHHHHHHHhhCCCC
Q 019152 252 NTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ-------RDKGFGFVRYSTHAEAALAIQMGNTTQ 324 (345)
Q Consensus 252 ~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~-------~~~~~afV~f~~~~~A~~Al~~l~~~~ 324 (345)
+.|||+|||.+.++++|++.|++.+. -|.+|.+. ++||||||+|.++..|..|..+|-.-.
T Consensus 165 -----------~RLFiG~IPK~k~keeIlee~~kVte-GVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~ 232 (506)
T KOG0117|consen 165 -----------CRLFIGNIPKTKKKEEILEEMKKVTE-GVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGK 232 (506)
T ss_pred -----------ceeEeccCCccccHHHHHHHHHhhCC-CeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCc
Confidence 78999999999999999999999884 46666654 348999999999999999997775442
Q ss_pred ccccCCceEEEeeccc
Q 019152 325 SSYLFGKQMKHDAMCG 340 (345)
Q Consensus 325 ~~~~~g~~l~v~~~~~ 340 (345)
+ .+.|..+.|+||-.
T Consensus 233 ~-klwgn~~tVdWAep 247 (506)
T KOG0117|consen 233 I-KLWGNAITVDWAEP 247 (506)
T ss_pred e-eecCCcceeeccCc
Confidence 3 68999999999864
No 33
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=4.1e-26 Score=171.81 Aligned_cols=164 Identities=30% Similarity=0.469 Sum_probs=143.2
Q ss_pred CCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 019152 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (345)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 218 (345)
....+|||+||+..++++-|+++|-..|+|..+++.+|+.+..++||||++|.++++|+-|++-|+...+.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 34569999999999999999999999999999999999999999999999999999999999999998999999999987
Q ss_pred cCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeC
Q 019152 219 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR 298 (345)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~ 298 (345)
........ -+..|||+||.+.+.+..|.+.|+.|| ..+..-.+.+
T Consensus 87 s~~~~nl~----------------------------------vganlfvgNLd~~vDe~~L~dtFsafG-~l~~~P~i~r 131 (203)
T KOG0131|consen 87 SAHQKNLD----------------------------------VGANLFVGNLDPEVDEKLLYDTFSAFG-VLISPPKIMR 131 (203)
T ss_pred cccccccc----------------------------------ccccccccccCcchhHHHHHHHHHhcc-ccccCCcccc
Confidence 63221111 114699999999999999999999999 2444345544
Q ss_pred C------cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeeccc
Q 019152 299 D------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCG 340 (345)
Q Consensus 299 ~------~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~ 340 (345)
+ +++|||.|.+.+.+.+|+..|||. .++++++.|+|++.
T Consensus 132 d~~tg~~~~~g~i~~~sfeasd~ai~s~ngq---~l~nr~itv~ya~k 176 (203)
T KOG0131|consen 132 DPDTGNPKGFGFINYASFEASDAAIGSMNGQ---YLCNRPITVSYAFK 176 (203)
T ss_pred cccCCCCCCCeEEechhHHHHHHHHHHhccc---hhcCCceEEEEEEe
Confidence 3 789999999999999999999999 99999999999864
No 34
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.93 E-value=2.2e-23 Score=177.02 Aligned_cols=164 Identities=21% Similarity=0.282 Sum_probs=137.0
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHh-ccCCceEEEEeecC---CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFS-STGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~-~~G~v~~v~~~~~~---~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
....|.+||+|||++....+|+++++ +.|.|+.|.++.|. .+|||.|+|+++|.+++|++.||...+.|++|.|+-
T Consensus 41 ~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred ccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 44556799999999999999999997 47899999999875 479999999999999999999999999999999975
Q ss_pred ccccC---------------------------------------------------------------------------
Q 019152 129 AYASG--------------------------------------------------------------------------- 133 (345)
Q Consensus 129 ~~~~~--------------------------------------------------------------------------- 133 (345)
.....
T Consensus 121 d~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~ 200 (608)
T KOG4212|consen 121 DHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLS 200 (608)
T ss_pred cCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccch
Confidence 43310
Q ss_pred -------CCCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 019152 134 -------QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 206 (345)
Q Consensus 134 -------~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~ 206 (345)
..-.++-...+||.||...+....|++.|.-.|.|.++.+-.|+ -|.++|++.++|..+-.|..||..+++.
T Consensus 201 ~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idK-eG~s~G~~vi~y~hpveavqaIsml~~~ 279 (608)
T KOG4212|consen 201 ASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDK-EGNSRGFAVIEYDHPVEAVQAISMLDRQ 279 (608)
T ss_pred hhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecc-ccccCCeeEEEecchHHHHHHHHhhccC
Confidence 00012223679999999999999999999999999999988884 5799999999999999999999999876
Q ss_pred eeCCeeEEEEe
Q 019152 207 WLGSRQIRCNW 217 (345)
Q Consensus 207 ~~~~~~i~v~~ 217 (345)
-+..++..+..
T Consensus 280 g~~~~~~~~Rl 290 (608)
T KOG4212|consen 280 GLFDRRMTVRL 290 (608)
T ss_pred CCccccceeec
Confidence 66666555544
No 35
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.92 E-value=1.3e-23 Score=197.39 Aligned_cols=168 Identities=18% Similarity=0.279 Sum_probs=141.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
....++|||+|||..+++++|+++|+.||.|..+.++.+. .+|||||+|.+.++|..|+..|+|..|.|+.|.|.+
T Consensus 292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3456789999999999999999999999999999998864 468999999999999999999999999999999998
Q ss_pred ccccCCC-------------------------CCCCCceeEEECCCCccC----------CHHHHHHHhccCCCcceeEe
Q 019152 129 AYASGQR-------------------------EDTSGHFNIFVGDLSPEV----------TDATLFACFSVYPSCSDARV 173 (345)
Q Consensus 129 ~~~~~~~-------------------------~~~~~~~~l~v~~lp~~~----------~~~~l~~~f~~~g~v~~~~~ 173 (345)
+...... ....++.+|+|.|+.... ..++|+++|++||.|..+.|
T Consensus 372 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i 451 (509)
T TIGR01642 372 ACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVI 451 (509)
T ss_pred CccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEe
Confidence 7532210 011245788999986421 23579999999999999999
Q ss_pred eecC---CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 019152 174 MWDQ---KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (345)
Q Consensus 174 ~~~~---~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 220 (345)
+++. .++...|++||+|.+.++|.+|+..|+|..|.|+.|.|.|...
T Consensus 452 ~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 452 PRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred eccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 8653 2345679999999999999999999999999999999999754
No 36
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.91 E-value=3.2e-24 Score=173.08 Aligned_cols=148 Identities=28% Similarity=0.513 Sum_probs=138.3
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccccCCCCC
Q 019152 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQRED 137 (345)
Q Consensus 58 ~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~ 137 (345)
.|||+|||..+++.+|+.+|++||.|.++.|++ +||||..++...|..|+..|+|-.|+|..|+|+.++.+.
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK----NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs---- 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVK----NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS---- 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeec----ccceEEeecccccHHHHhhcccceecceEEEEEeccccC----
Confidence 589999999999999999999999999999986 499999999999999999999999999999999887773
Q ss_pred CCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 019152 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (345)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~ 217 (345)
..+++++|+||.+.++..|++..|++||.|.++.++++ |+||.|...++|..|++.|++..|.|++++|..
T Consensus 76 -k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 76 -KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred -CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 45679999999999999999999999999999999955 899999999999999999999999999999998
Q ss_pred ccCCC
Q 019152 218 ATKGA 222 (345)
Q Consensus 218 ~~~~~ 222 (345)
++..-
T Consensus 147 stsrl 151 (346)
T KOG0109|consen 147 STSRL 151 (346)
T ss_pred ecccc
Confidence 86643
No 37
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.91 E-value=8.7e-23 Score=172.11 Aligned_cols=279 Identities=18% Similarity=0.202 Sum_probs=196.6
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCC--CccCCCceEEeecc
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNG--RHLFGQPIKVNWAY 130 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~--~~~~g~~l~v~~~~ 130 (345)
..+++.|.++|||++++|+||.+++.+||.|..+.+.+.++ .||++|.+.++|..-+..... -.+.|++|.|.|+.
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn--QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~sn 102 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN--QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYSN 102 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch--hhhhhhcchhhhhheeecccccCccccCcceeehhhh
Confidence 34678999999999999999999999999999999987776 899999999999884433222 34567777776653
Q ss_pred ccC------------------------------C-----CCCCC--CceeEEECCCCccCCHHHHHHHhccCCCcceeEe
Q 019152 131 ASG------------------------------Q-----REDTS--GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 173 (345)
Q Consensus 131 ~~~------------------------------~-----~~~~~--~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~ 173 (345)
... . ..... .--.+.|.++-..++-+-|..+|++||.|..+.-
T Consensus 103 ~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiT 182 (492)
T KOG1190|consen 103 HSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIIT 182 (492)
T ss_pred HHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEE
Confidence 211 0 00011 1135678888889999999999999999998854
Q ss_pred eecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee--CCeeEEEEeccCCCCCCCC---ccCccccchhhcc--------
Q 019152 174 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL--GSRQIRCNWATKGAGNNED---KQSSDAKSVVELT-------- 240 (345)
Q Consensus 174 ~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~--~~~~i~v~~~~~~~~~~~~---~~~~~~~~~~~~~-------- 240 (345)
... . ..--|.|+|.+.+.|..|...|+|+.+ +.+.+++.|++.....-.. +..+-..+..+.+
T Consensus 183 F~K-n---n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~ 258 (492)
T KOG1190|consen 183 FTK-N---NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQ 258 (492)
T ss_pred Eec-c---cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccccccch
Confidence 422 2 223489999999999999999999877 4577888877543221100 0000000001100
Q ss_pred -------CCCCcCCcCCC-C-------CCCCCCCCC--cceEEEcCCCc-ccCHHHHHHHhhhcCceeeEEEeeeCC-cc
Q 019152 241 -------NGSSEDGKETT-N-------TEAPENNPQ--YTTVYVGNLAP-EVTQLDLHRHFHSLGAGVIEEVRVQRD-KG 301 (345)
Q Consensus 241 -------~~~~~~~~~~~-~-------~~~~~~~~~--~~~l~V~nlp~-~~t~~~L~~~f~~~G~~~i~~v~i~~~-~~ 301 (345)
..+...+.+.. + ........+ +..|.|.||.. .+|.+.|..+|.-|| +|..|+|+.+ +.
T Consensus 259 ~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYG--dVqRVkil~nkkd 336 (492)
T KOG1190|consen 259 LMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYG--DVQRVKILYNKKD 336 (492)
T ss_pred hhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhc--ceEEEEeeecCCc
Confidence 00000000000 0 000111112 47888888877 689999999999999 8999999876 56
Q ss_pred eEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeeccccc
Q 019152 302 FGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCGTL 342 (345)
Q Consensus 302 ~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~~~ 342 (345)
.|.|+|.+...|..|++.|+|. .+.||+|+|.++|.+-
T Consensus 337 ~ALIQmsd~~qAqLA~~hL~g~---~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 337 NALIQMSDGQQAQLAMEHLEGH---KLYGKKLRVTLSKHTN 374 (492)
T ss_pred ceeeeecchhHHHHHHHHhhcc---eecCceEEEeeccCcc
Confidence 7999999999999999999999 9999999999999763
No 38
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.90 E-value=3.9e-21 Score=160.39 Aligned_cols=273 Identities=14% Similarity=0.127 Sum_probs=207.7
Q ss_pred EeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCC--CceEEeeccccC-----
Q 019152 61 VGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFG--QPIKVNWAYASG----- 133 (345)
Q Consensus 61 v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~~~~~~----- 133 (345)
|-|--+.+|-+-|+.++...|.|.+|.|+++ +.-.|.|+|.+.+.|.+|..+|||..|.. .+|+|.|+++..
T Consensus 127 IlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~k 205 (494)
T KOG1456|consen 127 ILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQK 205 (494)
T ss_pred eecCccccchhhhhhhcCCCCceEEEEEEec-cceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcceeeeee
Confidence 4454577999999999999999999988876 55689999999999999999999988753 688898886532
Q ss_pred --------------------------------------------------------------------------CCCCCC
Q 019152 134 --------------------------------------------------------------------------QREDTS 139 (345)
Q Consensus 134 --------------------------------------------------------------------------~~~~~~ 139 (345)
......
T Consensus 206 nd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~ 285 (494)
T KOG1456|consen 206 NDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDGRGYASPGGGA 285 (494)
T ss_pred cCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccCCCCCCCCCCC
Confidence 001113
Q ss_pred CceeEEECCCCcc-CCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 019152 140 GHFNIFVGDLSPE-VTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (345)
Q Consensus 140 ~~~~l~v~~lp~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 218 (345)
++..++|.+|... ++-+.|..+|--||.|+.+++++.+ .|.|.|++.+..+.++|+..|++..+.|.+|.|.++
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~S 360 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVS 360 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEeec
Confidence 3467899999854 6778999999999999999999653 356999999999999999999999999999999998
Q ss_pred cCCCCCCCCc--cCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEee
Q 019152 219 TKGAGNNEDK--QSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRV 296 (345)
Q Consensus 219 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i 296 (345)
+......... ..+...+...++.....+...+.........+++++|+..|.|..+||+.|.++|...+ +...++++
T Consensus 361 kQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~-v~~~svkv 439 (494)
T KOG1456|consen 361 KQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKD-VPPTSVKV 439 (494)
T ss_pred cccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcC-CCcceEEe
Confidence 7765544322 22222333333333333333334444556678899999999999999999999999887 35777777
Q ss_pred eCC----cceEEEEeCCHHHHHHHHHhhCCCCccccCC-ceEEEeeccc
Q 019152 297 QRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG-KQMKHDAMCG 340 (345)
Q Consensus 297 ~~~----~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g-~~l~v~~~~~ 340 (345)
... ...+.++|++.++|..||..+|+.|+..-+| -+..+.|+-.
T Consensus 440 Fp~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfs 488 (494)
T KOG1456|consen 440 FPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFS 488 (494)
T ss_pred ecccccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeec
Confidence 654 3568999999999999999999995422222 3444555433
No 39
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.90 E-value=3.7e-23 Score=185.94 Aligned_cols=257 Identities=21% Similarity=0.293 Sum_probs=190.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecccc
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (345)
-..+-+|||+|||+..+++|+..+| |||.|..++.|.+|...++|..+.|+.+.|....++
T Consensus 224 i~etgrlf~RNLpyt~~eed~~~lf-------------------a~v~~~~~~~avka~~~~D~k~fqgrmlhvlp~~~k 284 (725)
T KOG0110|consen 224 ISETGRLFVRNLPYTSTEEDLLKLF-------------------AFVTFMFPEHAVKAYSELDGKVFQGRMLHVLPSKEK 284 (725)
T ss_pred HHhhhhhhhccCCccccHHHHHHhh-------------------HHHhhhhhHHHHhhhhhccccccccceeeecCcchh
Confidence 4456679999999999999999999 899999999999999999999999999888665432
Q ss_pred CC------------------------------------------------------------------------------
Q 019152 133 GQ------------------------------------------------------------------------------ 134 (345)
Q Consensus 133 ~~------------------------------------------------------------------------------ 134 (345)
..
T Consensus 285 ~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~~e~ 364 (725)
T KOG0110|consen 285 STAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVVQEV 364 (725)
T ss_pred hhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhchhh
Confidence 10
Q ss_pred --------------CCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHH
Q 019152 135 --------------REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 200 (345)
Q Consensus 135 --------------~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 200 (345)
.......+.++++|||..+..+++..+|..||.|..+.+. ..|. .++|+|.+..+|.+|+
T Consensus 365 ~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp---~~G~---~aiv~fl~p~eAr~Af 438 (725)
T KOG0110|consen 365 RRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP---PGGT---GAIVEFLNPLEARKAF 438 (725)
T ss_pred hhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccccceeecC---cccc---eeeeeecCccchHHHH
Confidence 0011223679999999999999999999999999998554 2232 3899999999999999
Q ss_pred HHhCCceeCCeeEEEEeccCCCCCCCCccCccccc-hhhccCCCCcC-----CcCCCCCC----CC-----CCCCCcceE
Q 019152 201 NDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKS-VVELTNGSSED-----GKETTNTE----AP-----ENNPQYTTV 265 (345)
Q Consensus 201 ~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~----~~-----~~~~~~~~l 265 (345)
+.|....+...++.+.|+....-............ ........... ........ .. ......++|
T Consensus 439 rklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~l 518 (725)
T KOG0110|consen 439 RKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKL 518 (725)
T ss_pred HHhchhhhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhh
Confidence 99999999999999998755433211110000000 00000000000 00000000 00 111122349
Q ss_pred EEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC---------cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEe
Q 019152 266 YVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD---------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHD 336 (345)
Q Consensus 266 ~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~---------~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~ 336 (345)
||.||++++|.++|...|.+.| .|.++.|... .|+|||+|.+.++|..|+..|+|+ .++|+.|.|+
T Consensus 519 fvkNlnf~Tt~e~l~~~F~k~G--~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgt---vldGH~l~lk 593 (725)
T KOG0110|consen 519 FVKNLNFDTTLEDLEDLFSKQG--TVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGT---VLDGHKLELK 593 (725)
T ss_pred hhhcCCcccchhHHHHHHHhcC--eEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCc---eecCceEEEE
Confidence 9999999999999999999999 7888877643 399999999999999999999999 9999999999
Q ss_pred ecc
Q 019152 337 AMC 339 (345)
Q Consensus 337 ~~~ 339 (345)
++.
T Consensus 594 ~S~ 596 (725)
T KOG0110|consen 594 ISE 596 (725)
T ss_pred ecc
Confidence 987
No 40
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.89 E-value=4.6e-23 Score=166.48 Aligned_cols=150 Identities=26% Similarity=0.442 Sum_probs=136.9
Q ss_pred eeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCC
Q 019152 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (345)
Q Consensus 142 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 221 (345)
.+|||+|||..+++.+|+.+|++||.|.++.|+++ |+||..++...|..||+.|++-.+.|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 37999999999999999999999999999999954 8999999999999999999999999999999987765
Q ss_pred CCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcc
Q 019152 222 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKG 301 (345)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~ 301 (345)
.. .+++|+|+||.+.++..+|+..|++|| .+.++.|.++
T Consensus 75 sk-------------------------------------~stkl~vgNis~tctn~ElRa~fe~yg--pviecdivkd-- 113 (346)
T KOG0109|consen 75 SK-------------------------------------ASTKLHVGNISPTCTNQELRAKFEKYG--PVIECDIVKD-- 113 (346)
T ss_pred CC-------------------------------------CccccccCCCCccccCHHHhhhhcccC--Cceeeeeecc--
Confidence 21 126799999999999999999999999 7889999855
Q ss_pred eEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeecccccc
Q 019152 302 FGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCGTLC 343 (345)
Q Consensus 302 ~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~~~~ 343 (345)
++||.|+-.++|..|+..|++. +|.|++++|..+..-|+
T Consensus 114 y~fvh~d~~eda~~air~l~~~---~~~gk~m~vq~stsrlr 152 (346)
T KOG0109|consen 114 YAFVHFDRAEDAVEAIRGLDNT---EFQGKRMHVQLSTSRLR 152 (346)
T ss_pred eeEEEEeeccchHHHHhccccc---ccccceeeeeeeccccc
Confidence 9999999999999999999999 99999999998776553
No 41
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=2.5e-22 Score=160.31 Aligned_cols=172 Identities=27% Similarity=0.464 Sum_probs=149.9
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC---CCCeEEEEEeCHHHHHHHHHHhCCCc-cCC--CceE
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRH-LFG--QPIK 125 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~~~~afv~f~~~~~A~~a~~~l~~~~-~~g--~~l~ 125 (345)
.+.+.++|||+-|...-+|+|++.+|..||.|+++.+.+.. ++|||||.|.+..+|..||..|+|.. +.| ..|-
T Consensus 15 rg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLV 94 (371)
T KOG0146|consen 15 RGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLV 94 (371)
T ss_pred CCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceE
Confidence 34567899999999999999999999999999999998854 57999999999999999999999854 444 4677
Q ss_pred EeeccccC------------------------------------------------------------------------
Q 019152 126 VNWAYASG------------------------------------------------------------------------ 133 (345)
Q Consensus 126 v~~~~~~~------------------------------------------------------------------------ 133 (345)
|+++....
T Consensus 95 VK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl 174 (371)
T KOG0146|consen 95 VKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGL 174 (371)
T ss_pred EEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccc
Confidence 77774321
Q ss_pred --------------------------------------------------------------------------------
Q 019152 134 -------------------------------------------------------------------------------- 133 (345)
Q Consensus 134 -------------------------------------------------------------------------------- 133 (345)
T Consensus 175 ~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~ 254 (371)
T KOG0146|consen 175 AAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYA 254 (371)
T ss_pred ccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHh
Confidence
Q ss_pred -----------------------CCCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEe
Q 019152 134 -----------------------QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSF 190 (345)
Q Consensus 134 -----------------------~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f 190 (345)
..+..+..++|||..||....+.||..+|-+||.|.+.++..|+.++.++.|+||.|
T Consensus 255 Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSf 334 (371)
T KOG0146|consen 255 AAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSF 334 (371)
T ss_pred hhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEec
Confidence 012345568999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhCCceeCCeeEEEEeccCCCC
Q 019152 191 RNQQDAQSAINDLTGKWLGSRQIRCNWATKGAG 223 (345)
Q Consensus 191 ~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~ 223 (345)
.++.+|..||..|||..|+-++++|....++..
T Consensus 335 DNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 335 DNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred CCchhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 999999999999999999999999988766543
No 42
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=1.3e-22 Score=161.98 Aligned_cols=214 Identities=23% Similarity=0.314 Sum_probs=156.9
Q ss_pred CCceEEeeccccCCCCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHH
Q 019152 121 GQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 200 (345)
Q Consensus 121 g~~l~v~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 200 (345)
.+.+.|+++...... ..+++|||+.|.+.-+|+|++.+|..||.++++.+++. .+|.++|++||.|.+..+|..||
T Consensus 2 nrpiqvkpadsesrg---~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg-~dg~sKGCAFVKf~s~~eAqaAI 77 (371)
T KOG0146|consen 2 NRPIQVKPADSESRG---GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG-PDGNSKGCAFVKFSSHAEAQAAI 77 (371)
T ss_pred CCCccccccccccCC---ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC-CCCCCCCceEEEeccchHHHHHH
Confidence 356777766544432 24579999999999999999999999999999999988 57999999999999999999999
Q ss_pred HHhCCce-e--CCeeEEEEeccCCCCCCCCccCccc-----------------------------------cch------
Q 019152 201 NDLTGKW-L--GSRQIRCNWATKGAGNNEDKQSSDA-----------------------------------KSV------ 236 (345)
Q Consensus 201 ~~l~~~~-~--~~~~i~v~~~~~~~~~~~~~~~~~~-----------------------------------~~~------ 236 (345)
..|+|.. + ....+.|+|++..+++..+...... ...
T Consensus 78 ~aLHgSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~ 157 (371)
T KOG0146|consen 78 NALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAA 157 (371)
T ss_pred HHhcccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhh
Confidence 9999954 3 4678999998776532221100000 000
Q ss_pred -------------------hhccCCC-----------------------------CcC----------------------
Q 019152 237 -------------------VELTNGS-----------------------------SED---------------------- 246 (345)
Q Consensus 237 -------------------~~~~~~~-----------------------------~~~---------------------- 246 (345)
.+....+ ...
T Consensus 158 ~~~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp 237 (371)
T KOG0146|consen 158 FAAAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSP 237 (371)
T ss_pred hHHHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCc
Confidence 0000000 000
Q ss_pred --------------------------------CcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEE
Q 019152 247 --------------------------------GKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEV 294 (345)
Q Consensus 247 --------------------------------~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v 294 (345)
.....-......++++|.|||..||-.+.+.+|..+|-+|| .|.+.
T Consensus 238 ~va~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFG--hivSa 315 (371)
T KOG0146|consen 238 TVADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFG--HIVSA 315 (371)
T ss_pred cccchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhcccc--ceeee
Confidence 00000001124567889999999999999999999999999 56665
Q ss_pred eeeC------CcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeecccccc
Q 019152 295 RVQR------DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCGTLC 343 (345)
Q Consensus 295 ~i~~------~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~~~~ 343 (345)
++.- +++++||.|+|..+|..||..|||. .|+-++|+|.+-+....
T Consensus 316 KVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGF---QIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 316 KVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGF---QIGMKRLKVQLKRPKDA 367 (371)
T ss_pred eeeehhccccccceeeEecCCchhHHHHHHHhcch---hhhhhhhhhhhcCcccc
Confidence 5543 3799999999999999999999999 99999999988765443
No 43
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=1.3e-22 Score=168.76 Aligned_cols=168 Identities=24% Similarity=0.500 Sum_probs=142.1
Q ss_pred eeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCC
Q 019152 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (345)
Q Consensus 142 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 221 (345)
+.+|||.+...+.|+.|+..|.+||+|+++.+.+|+.+++++||+||+|+-+|.|..|++.|||..++||.|+|.....-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999742211
Q ss_pred CCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC--
Q 019152 222 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-- 299 (345)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~-- 299 (345)
... .... . ...........|||..+..+++++||+..|+.|| +|..|.+-+.
T Consensus 194 pQA--QpiI---D-------------------~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG--~I~~C~LAr~pt 247 (544)
T KOG0124|consen 194 PQA--QPII---D-------------------MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFG--EIVKCQLARAPT 247 (544)
T ss_pred ccc--chHH---H-------------------HHHHHHHhhheEEeeecCCCccHHHHHHHHHhhc--ceeeEEeeccCC
Confidence 100 0000 0 0001111225799999999999999999999999 8999999765
Q ss_pred ----cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeec
Q 019152 300 ----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAM 338 (345)
Q Consensus 300 ----~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~ 338 (345)
+||+|++|.+..+-..|+..||-. -++|.-|+|.-+
T Consensus 248 ~~~HkGyGfiEy~n~qs~~eAiasMNlF---DLGGQyLRVGk~ 287 (544)
T KOG0124|consen 248 GRGHKGYGFIEYNNLQSQSEAIASMNLF---DLGGQYLRVGKC 287 (544)
T ss_pred CCCccceeeEEeccccchHHHhhhcchh---hcccceEecccc
Confidence 899999999999999999999988 899999998543
No 44
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=5.9e-21 Score=169.58 Aligned_cols=267 Identities=20% Similarity=0.308 Sum_probs=203.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcc-----------C-CceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccC
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSST-----------G-PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLF 120 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~-----------G-~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~ 120 (345)
....+.++|+++|..++++.+..+|..- | .+..+.+-.. +++||++|.+.+.|..|+ .+++..+.
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~--~nfa~ie~~s~~~at~~~-~~~~~~f~ 248 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLE--KNFAFIEFRSISEATEAM-ALDGIIFE 248 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccc--ccceeEEecCCCchhhhh-cccchhhC
Confidence 3445679999999999999999999753 3 3555555444 459999999999999997 67898899
Q ss_pred CCceEEeeccccC--------------------CCCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCC
Q 019152 121 GQPIKVNWAYASG--------------------QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTG 180 (345)
Q Consensus 121 g~~l~v~~~~~~~--------------------~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~ 180 (345)
|..+++.-..... ..........+||++||..+++.+++++...||.+....+..+..+|
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG 328 (500)
T ss_pred CCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc
Confidence 9888875433221 11122334689999999999999999999999999999999998889
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCCCCCCCCccCccccchhhccCCCCcCCcCCCCCC--CCCC
Q 019152 181 RSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTE--APEN 258 (345)
Q Consensus 181 ~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 258 (345)
.++||||.+|.+......|+..|+|..++++.+.|..+................ ....... ....
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~-------------~~~~i~~~~~q~~ 395 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQS-------------QVPGIPLLMTQMA 395 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCcccc-------------ccccchhhhcccC
Confidence 999999999999999999999999999999999999887655433322220000 0011111 1233
Q ss_pred CCCcceEEEcCC--CcccC-H-------HHHHHHhhhcCceeeEEEeeeCC---------cceEEEEeCCHHHHHHHHHh
Q 019152 259 NPQYTTVYVGNL--APEVT-Q-------LDLHRHFHSLGAGVIEEVRVQRD---------KGFGFVRYSTHAEAALAIQM 319 (345)
Q Consensus 259 ~~~~~~l~V~nl--p~~~t-~-------~~L~~~f~~~G~~~i~~v~i~~~---------~~~afV~f~~~~~A~~Al~~ 319 (345)
..+...|++.|+ |..+. + |+++..+.+|| .|..|.++++ .|..||+|.+.+++++|+..
T Consensus 396 g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g--~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~ 473 (500)
T KOG0120|consen 396 GIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFG--AVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEE 473 (500)
T ss_pred CCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccC--ceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHH
Confidence 445567777776 22222 1 45666788999 7888888876 58899999999999999999
Q ss_pred hCCCCccccCCceEEEeeccc
Q 019152 320 GNTTQSSYLFGKQMKHDAMCG 340 (345)
Q Consensus 320 l~~~~~~~~~g~~l~v~~~~~ 340 (345)
|+|. .|.||.+..+|-..
T Consensus 474 L~Gr---KF~nRtVvtsYyde 491 (500)
T KOG0120|consen 474 LTGR---KFANRTVVASYYDE 491 (500)
T ss_pred ccCc---eeCCcEEEEEecCH
Confidence 9999 99999999988543
No 45
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.87 E-value=5.2e-20 Score=159.44 Aligned_cols=274 Identities=16% Similarity=0.183 Sum_probs=185.1
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeec--CCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecc
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK--DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~--~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (345)
......|.+++||+++|++||.+||+.++ |+++.+.+. +.+|-|||+|.+.+++.+|++ .+...+..+-|.|-.+.
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAG 84 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccC
Confidence 44566799999999999999999999986 667777765 456899999999999999995 47777878888886664
Q ss_pred ccC--------CCCCCCCceeEEECCCCccCCHHHHHHHhccCCCcce-eEeeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 019152 131 ASG--------QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD-ARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 201 (345)
Q Consensus 131 ~~~--------~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 201 (345)
... ......+...|.+.+||..|+++||.++|+..-.|.. +.++.+ ..+++.|-|||+|++.+.|+.|+.
T Consensus 85 ~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~ 163 (510)
T KOG4211|consen 85 GAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALG 163 (510)
T ss_pred CccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHH
Confidence 332 2223345678999999999999999999998755555 334444 567799999999999999999998
Q ss_pred HhCCceeCCeeEEEEeccCCCCCCCC----ccCccccchhh---------------------------------------
Q 019152 202 DLTGKWLGSRQIRCNWATKGAGNNED----KQSSDAKSVVE--------------------------------------- 238 (345)
Q Consensus 202 ~l~~~~~~~~~i~v~~~~~~~~~~~~----~~~~~~~~~~~--------------------------------------- 238 (345)
. +...++.+.|.|-.+.....+... .....+.+...
T Consensus 164 r-hre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~ 242 (510)
T KOG4211|consen 164 R-HRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSL 242 (510)
T ss_pred H-HHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccc
Confidence 5 777788888888644221100000 00000000000
Q ss_pred -----ccCCCCcCCcCCCCC----------CCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeC---Cc
Q 019152 239 -----LTNGSSEDGKETTNT----------EAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR---DK 300 (345)
Q Consensus 239 -----~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~---~~ 300 (345)
..............+ ...........++.++||+..++.+|.++|+..-+ .-..|.|.. ..
T Consensus 243 ~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p-~~v~i~ig~dGr~T 321 (510)
T KOG4211|consen 243 QDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNP-YRVHIEIGPDGRAT 321 (510)
T ss_pred cccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCc-eeEEEEeCCCCccC
Confidence 000000000000000 00011122367899999999999999999997642 223344443 37
Q ss_pred ceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEE
Q 019152 301 GFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKH 335 (345)
Q Consensus 301 ~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v 335 (345)
|.|+|+|.|.++|..|+.+ ++. .+..+-+.+
T Consensus 322 GEAdveF~t~edav~Amsk-d~a---nm~hrYVEl 352 (510)
T KOG4211|consen 322 GEADVEFATGEDAVGAMGK-DGA---NMGHRYVEL 352 (510)
T ss_pred CcceeecccchhhHhhhcc-CCc---ccCcceeee
Confidence 9999999999999999954 344 466665554
No 46
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.84 E-value=1.8e-18 Score=144.62 Aligned_cols=279 Identities=17% Similarity=0.193 Sum_probs=206.3
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHH--hCCCccCCCceEEeec
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILS--LNGRHLFGQPIKVNWA 129 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~--l~~~~~~g~~l~v~~~ 129 (345)
.+.++..|.|++|-..++|.||.+.++.||+|.-+.++..+. .|+|+|.+.+.|+.++.- -+..++.|+.-.++++
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r--~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyS 104 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR--QALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYS 104 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc--eeeeeeccccchhhheehhccCcccccCchhhcccc
Confidence 466778899999999999999999999999998888776654 799999999999999843 3556788888888888
Q ss_pred cccC----CCCCCCCceeEEECCCC--ccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 019152 130 YASG----QREDTSGHFNIFVGDLS--PEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203 (345)
Q Consensus 130 ~~~~----~~~~~~~~~~l~v~~lp--~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l 203 (345)
.... ..+...++..|.++-|. ..+|.+-|..++...|.|.++.|++. +| --|.|+|.+.+.|.+|...|
T Consensus 105 tsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~al 179 (494)
T KOG1456|consen 105 TSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAAL 179 (494)
T ss_pred hhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhc
Confidence 5432 22333444555555444 56888999999999999999988753 33 35999999999999999999
Q ss_pred CCcee--CCeeEEEEeccCCCCCCCCccCccc-------------cc----------hhhc---cCCCCcC---------
Q 019152 204 TGKWL--GSRQIRCNWATKGAGNNEDKQSSDA-------------KS----------VVEL---TNGSSED--------- 246 (345)
Q Consensus 204 ~~~~~--~~~~i~v~~~~~~~~~~~~~~~~~~-------------~~----------~~~~---~~~~~~~--------- 246 (345)
||..| +-.+++|+|+++...+-.+...+.. .. .... .....+.
T Consensus 180 NGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~ 259 (494)
T KOG1456|consen 180 NGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHG 259 (494)
T ss_pred ccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCC
Confidence 99766 5788999999775432111100000 00 0000 0000000
Q ss_pred ----------C--cCCCCCCCCCCCCCcceEEEcCCCcc-cCHHHHHHHhhhcCceeeEEEeeeCC-cceEEEEeCCHHH
Q 019152 247 ----------G--KETTNTEAPENNPQYTTVYVGNLAPE-VTQLDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHAE 312 (345)
Q Consensus 247 ----------~--~~~~~~~~~~~~~~~~~l~V~nlp~~-~t~~~L~~~f~~~G~~~i~~v~i~~~-~~~afV~f~~~~~ 312 (345)
. ........+....+++.+.|.+|.-. ++-+.|..+|-.|| .|+.|++++. .|.|.|++.+..+
T Consensus 260 p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYG--NV~rvkFmkTk~gtamVemgd~~a 337 (494)
T KOG1456|consen 260 PPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYG--NVERVKFMKTKPGTAMVEMGDAYA 337 (494)
T ss_pred CCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcC--ceeeEEEeecccceeEEEcCcHHH
Confidence 0 00001122344567789999999884 67788999999999 8999999886 5899999999999
Q ss_pred HHHHHHhhCCCCccccCCceEEEeeccccc
Q 019152 313 AALAIQMGNTTQSSYLFGKQMKHDAMCGTL 342 (345)
Q Consensus 313 A~~Al~~l~~~~~~~~~g~~l~v~~~~~~~ 342 (345)
..+|+..||+. .+-|.+|.|.++|..+
T Consensus 338 ver~v~hLnn~---~lfG~kl~v~~SkQ~~ 364 (494)
T KOG1456|consen 338 VERAVTHLNNI---PLFGGKLNVCVSKQNF 364 (494)
T ss_pred HHHHHHHhccC---ccccceEEEeeccccc
Confidence 99999999999 8899999999988654
No 47
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.84 E-value=2.4e-19 Score=141.02 Aligned_cols=190 Identities=19% Similarity=0.239 Sum_probs=146.0
Q ss_pred ceeEEECCCCccCCHHHHHH----HhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 019152 141 HFNIFVGDLSPEVTDATLFA----CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (345)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~----~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~ 216 (345)
+.+|||.||+..+..++|++ +|+.||.|..|... ++.+.+|-|||.|.+.+.|..|++.|+|..|.|+.+++.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 34999999999999999888 99999999999888 567899999999999999999999999999999999999
Q ss_pred eccCCCCCCCCcc-----Cccccchhhc--------cCCCCc---CCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHH
Q 019152 217 WATKGAGNNEDKQ-----SSDAKSVVEL--------TNGSSE---DGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLH 280 (345)
Q Consensus 217 ~~~~~~~~~~~~~-----~~~~~~~~~~--------~~~~~~---~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~ 280 (345)
|+..+........ .......... .+.... .+..+.+. .....++..++++.|||..++.+.|.
T Consensus 86 yA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~-~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPF-LAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred cccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCc-cccCCCCceEEEEecCCcchhHHHHH
Confidence 9977653322211 0000000000 000000 00000011 13346788999999999999999999
Q ss_pred HHhhhcCceeeEEEeeeCC-cceEEEEeCCHHHHHHHHHhhCCCCccccC-CceEEEeecc
Q 019152 281 RHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHAEAALAIQMGNTTQSSYLF-GKQMKHDAMC 339 (345)
Q Consensus 281 ~~f~~~G~~~i~~v~i~~~-~~~afV~f~~~~~A~~Al~~l~~~~~~~~~-g~~l~v~~~~ 339 (345)
.+|..|. -...|++... ++.|||+|.+...|..|...+.+. .+. ...++|.|++
T Consensus 165 ~lf~qf~--g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~---~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 165 DLFEQFP--GFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGF---KITKKNTMQITFAK 220 (221)
T ss_pred HHHhhCc--ccceeEeccCCCceeEEecchhhhhHHHhhhhccc---eeccCceEEecccC
Confidence 9999998 5888888875 789999999999999999999999 665 8889998876
No 48
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=3e-19 Score=135.10 Aligned_cols=148 Identities=21% Similarity=0.362 Sum_probs=127.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC-CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecccc
Q 019152 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (345)
Q Consensus 54 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~-~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (345)
..+++|||+|||.++.+.+|.++|-+||.|..|.+..... ..||||+|.++.+|+.|+..-+|..+.|..|+|+++...
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 4568899999999999999999999999999998865443 579999999999999999999999999999999998643
Q ss_pred CC-----------------------CCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEE
Q 019152 133 GQ-----------------------REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVS 189 (345)
Q Consensus 133 ~~-----------------------~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~ 189 (345)
.. .....+...|.|.+||++.++++|++...+.|.|....+.+| |++.|+
T Consensus 84 r~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~ 156 (241)
T KOG0105|consen 84 RSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVE 156 (241)
T ss_pred CcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeee
Confidence 11 011123478999999999999999999999999988888765 268999
Q ss_pred eCCHHHHHHHHHHhCCcee
Q 019152 190 FRNQQDAQSAINDLTGKWL 208 (345)
Q Consensus 190 f~~~~~a~~a~~~l~~~~~ 208 (345)
|...|+.+-|++.|....+
T Consensus 157 ~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 157 YLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred eeehhhHHHHHHhhccccc
Confidence 9999999999999988765
No 49
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.80 E-value=2.5e-19 Score=152.01 Aligned_cols=170 Identities=22% Similarity=0.416 Sum_probs=149.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecc
Q 019152 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (345)
Q Consensus 55 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (345)
..++|+|++|++.++++.|+++|..||.|.++.+++++. +||+||+|.+++...+++. .....|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 568899999999999999999999999999999999764 5899999999999988874 35678899999999887
Q ss_pred ccCCCCCC---CCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 019152 131 ASGQREDT---SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 207 (345)
Q Consensus 131 ~~~~~~~~---~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~ 207 (345)
+....... .....+||++||.+++++++++.|+.||.|..+.++.|..+..+++|+||.|.+++++++++. ..-..
T Consensus 84 ~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~ 162 (311)
T KOG4205|consen 84 SREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHD 162 (311)
T ss_pred CcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceee
Confidence 76644333 245689999999999999999999999999999999999999999999999999999999986 57788
Q ss_pred eCCeeEEEEeccCCCCCCC
Q 019152 208 LGSRQIRCNWATKGAGNNE 226 (345)
Q Consensus 208 ~~~~~i~v~~~~~~~~~~~ 226 (345)
|.++.+.|..+.++.....
T Consensus 163 ~~gk~vevkrA~pk~~~~~ 181 (311)
T KOG4205|consen 163 FNGKKVEVKRAIPKEVMQS 181 (311)
T ss_pred ecCceeeEeeccchhhccc
Confidence 9999999999888765443
No 50
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.79 E-value=5.5e-18 Score=133.45 Aligned_cols=158 Identities=18% Similarity=0.412 Sum_probs=137.3
Q ss_pred ceEEEeCCCCCCCHHHHHH----HHhccCCceEEEEeec-CCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccc
Q 019152 57 RSVYVGNIHTQVTEPLLQE----VFSSTGPVEGCKLIRK-DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (345)
Q Consensus 57 ~~l~v~~lp~~~t~~~l~~----~f~~~G~v~~v~~~~~-~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (345)
.||||.||+..+..++|+. +|+.||.|.+|...+. +.+|.|||.|.+.+.|..|+.+|+|..+.|+.++|.|+..
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s 89 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKS 89 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccC
Confidence 4899999999999999888 9999999999988865 4589999999999999999999999999999999999865
Q ss_pred cCC-----------------------------------------------CCCCCCceeEEECCCCccCCHHHHHHHhcc
Q 019152 132 SGQ-----------------------------------------------REDTSGHFNIFVGDLSPEVTDATLFACFSV 164 (345)
Q Consensus 132 ~~~-----------------------------------------------~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~ 164 (345)
+.. .....++..+++.|||..++.+.+..+|..
T Consensus 90 ~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~q 169 (221)
T KOG4206|consen 90 DSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQ 169 (221)
T ss_pred ccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhh
Confidence 431 011355678999999999999999999999
Q ss_pred CCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC-CeeEEEEecc
Q 019152 165 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG-SRQIRCNWAT 219 (345)
Q Consensus 165 ~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~-~~~i~v~~~~ 219 (345)
|+....++++... .+.|||+|.+...|..|...+.+..+. ...+.|.+++
T Consensus 170 f~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 170 FPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred CcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 9999999888542 457999999999999999999998775 8888887764
No 51
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=4.9e-18 Score=128.57 Aligned_cols=169 Identities=22% Similarity=0.343 Sum_probs=127.4
Q ss_pred CceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 019152 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (345)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 219 (345)
.++.|||+|||.++.+.+|.++|.+||.|..|.+... .....||||+|++..+|+.||..-+|..++|..|+|+|..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 4578999999999999999999999999999987743 2456799999999999999999889999999999999986
Q ss_pred CCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC
Q 019152 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 299 (345)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~ 299 (345)
...........-.. .... .......-.+..-.....+.|.+||.+-+|+||++.+.+.| .+....+.++
T Consensus 82 ggr~s~~~~G~y~g-----ggrg----Ggg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaG--dvCfadv~rD 150 (241)
T KOG0105|consen 82 GGRSSSDRRGSYSG-----GGRG----GGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAG--DVCFADVQRD 150 (241)
T ss_pred CCCcccccccccCC-----CCCC----CCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhC--Ceeeeeeecc
Confidence 65422111110000 0000 00000000111112225799999999999999999999999 6777777765
Q ss_pred cceEEEEeCCHHHHHHHHHhhCCC
Q 019152 300 KGFGFVRYSTHAEAALAIQMGNTT 323 (345)
Q Consensus 300 ~~~afV~f~~~~~A~~Al~~l~~~ 323 (345)
+.+.|+|...++.+-|+..|...
T Consensus 151 -g~GvV~~~r~eDMkYAvr~ld~~ 173 (241)
T KOG0105|consen 151 -GVGVVEYLRKEDMKYAVRKLDDQ 173 (241)
T ss_pred -cceeeeeeehhhHHHHHHhhccc
Confidence 69999999999999999999877
No 52
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.75 E-value=3.7e-18 Score=144.94 Aligned_cols=163 Identities=28% Similarity=0.479 Sum_probs=135.9
Q ss_pred CceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 019152 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (345)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 219 (345)
...+|||++|+..++++.|++.|..||+|..+.+++|+.+++++||+||+|.+.+...+++. .....+.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 45789999999999999999999999999999999999999999999999999999988886 35667889998888776
Q ss_pred CCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC
Q 019152 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 299 (345)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~ 299 (345)
+......... ....+.|+|++||.++++++++++|++|| .|..+.+..+
T Consensus 84 ~r~~~~~~~~-----------------------------~~~tkkiFvGG~~~~~~e~~~r~yfe~~g--~v~~~~~~~d 132 (311)
T KOG4205|consen 84 SREDQTKVGR-----------------------------HLRTKKIFVGGLPPDTTEEDFKDYFEQFG--KVADVVIMYD 132 (311)
T ss_pred Cccccccccc-----------------------------ccceeEEEecCcCCCCchHHHhhhhhccc--eeEeeEEeec
Confidence 6543322221 11347899999999999999999999999 7777776643
Q ss_pred ------cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeec
Q 019152 300 ------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAM 338 (345)
Q Consensus 300 ------~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~ 338 (345)
++++||+|.+++...+++. .+-+ .|+|+.+.|.-|
T Consensus 133 ~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~---~~~gk~vevkrA 173 (311)
T KOG4205|consen 133 KTTSRPRGFGFVTFDSEDSVDKVTL-QKFH---DFNGKKVEVKRA 173 (311)
T ss_pred ccccccccceeeEeccccccceecc-ccee---eecCceeeEeec
Confidence 8999999999999888873 3444 799999988655
No 53
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.75 E-value=1.2e-18 Score=153.03 Aligned_cols=173 Identities=25% Similarity=0.404 Sum_probs=141.0
Q ss_pred ceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 019152 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (345)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 220 (345)
.+++|+.-|+...++.+|.++|+.+|.|..|+++.|+.++.++|.+||+|.+.+....|+. |.|..+.|-+|.|..+..
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~sEa 257 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLSEA 257 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecccHH
Confidence 4678888888888999999999999999999999999999999999999999999999995 999999999999987543
Q ss_pred CCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC-
Q 019152 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD- 299 (345)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~- 299 (345)
.+-. ..+...+. .......+...|||+||++++++++|+.+|++|| .|..|.+..+
T Consensus 258 eknr-----~a~~s~a~----------------~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg--~Ie~v~l~~d~ 314 (549)
T KOG0147|consen 258 EKNR-----AANASPAL----------------QGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFG--KIENVQLTKDS 314 (549)
T ss_pred HHHH-----HHhccccc----------------cccccccchhhhhhcccccCchHHHHhhhccCcc--cceeeeecccc
Confidence 2211 00000000 0011112223499999999999999999999999 7777777655
Q ss_pred -----cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeeccc
Q 019152 300 -----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCG 340 (345)
Q Consensus 300 -----~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~ 340 (345)
+||+||+|.+.++|.+|+..|||. ++.|+.|+|+...+
T Consensus 315 ~tG~skgfGfi~f~~~~~ar~a~e~lngf---elAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 315 ETGRSKGFGFITFVNKEDARKALEQLNGF---ELAGRLIKVSVVTE 357 (549)
T ss_pred ccccccCcceEEEecHHHHHHHHHHhccc---eecCceEEEEEeee
Confidence 799999999999999999999998 99999999986543
No 54
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.73 E-value=5e-17 Score=124.70 Aligned_cols=84 Identities=40% Similarity=0.623 Sum_probs=79.0
Q ss_pred CCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 019152 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (345)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 218 (345)
..+++|||+|||.++++++|+++|++||.|..+.++.++.+++++|||||+|.+.++|..|++.|++..+.|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCC
Q 019152 219 TKGA 222 (345)
Q Consensus 219 ~~~~ 222 (345)
..+.
T Consensus 112 ~~~~ 115 (144)
T PLN03134 112 NDRP 115 (144)
T ss_pred CcCC
Confidence 7643
No 55
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.73 E-value=1.7e-16 Score=123.87 Aligned_cols=153 Identities=22% Similarity=0.382 Sum_probs=120.3
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeec-CC----CCeEEEEEeCHHHHHHHHHHhCCCccC---CCc
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK-DK----SSYGFIHYFDRRSAAMAILSLNGRHLF---GQP 123 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~-~~----~~~afv~f~~~~~A~~a~~~l~~~~~~---g~~ 123 (345)
.+..-|||||+|||.++...+|+.+|..|-..+...+... +. +.+|||.|.+..+|..|+.+|||..|+ +..
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 4666899999999999999999999999877666555432 22 269999999999999999999999986 577
Q ss_pred eEEeeccccCCC--------------------------------------------------------------------
Q 019152 124 IKVNWAYASGQR-------------------------------------------------------------------- 135 (345)
Q Consensus 124 l~v~~~~~~~~~-------------------------------------------------------------------- 135 (345)
|++.+++.....
T Consensus 110 LhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~ 189 (284)
T KOG1457|consen 110 LHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSK 189 (284)
T ss_pred eEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhc
Confidence 888776432100
Q ss_pred ---------------CCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHH
Q 019152 136 ---------------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 200 (345)
Q Consensus 136 ---------------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 200 (345)
.......+|||.||..+++|++|+.+|+.|.....+++... .| ...+|++|++.+.|..|+
T Consensus 190 ~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am 265 (284)
T KOG1457|consen 190 APSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAM 265 (284)
T ss_pred CCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHH
Confidence 00011157999999999999999999999977666655522 23 347999999999999999
Q ss_pred HHhCCcee
Q 019152 201 NDLTGKWL 208 (345)
Q Consensus 201 ~~l~~~~~ 208 (345)
..|+|..+
T Consensus 266 ~~lqg~~~ 273 (284)
T KOG1457|consen 266 NHLQGNLL 273 (284)
T ss_pred HHhhccee
Confidence 99998765
No 56
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.70 E-value=5.2e-16 Score=121.20 Aligned_cols=183 Identities=17% Similarity=0.267 Sum_probs=126.6
Q ss_pred ceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCC-CCcccEEEEEeCCHHHHHHHHHHhCCcee---CCeeEEEE
Q 019152 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKT-GRSRGFGFVSFRNQQDAQSAINDLTGKWL---GSRQIRCN 216 (345)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-~~~~g~~fv~f~~~~~a~~a~~~l~~~~~---~~~~i~v~ 216 (345)
-++|||.+||.++...||..+|..|-.-+...+....+. ...+-+||+.|.+...|.+|+..|||..| .+..++++
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 479999999999999999999999976666655533222 23457999999999999999999999998 48999999
Q ss_pred eccCCCCCCCCccCccccch--hhccC--------------CCCc-----------CCcCCCC-----------------
Q 019152 217 WATKGAGNNEDKQSSDAKSV--VELTN--------------GSSE-----------DGKETTN----------------- 252 (345)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~--~~~~~--------------~~~~-----------~~~~~~~----------------- 252 (345)
+++........+....+... ..... .... ...+...
T Consensus 114 lAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a 193 (284)
T KOG1457|consen 114 LAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSA 193 (284)
T ss_pred ehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCcc
Confidence 98654433222211111000 00000 0000 0000000
Q ss_pred -------CCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCC
Q 019152 253 -------TEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 323 (345)
Q Consensus 253 -------~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~ 323 (345)
.+.......+.||||.||..++++++|+.+|+.|....+..++-......||++|++.+.|..|+..|.|.
T Consensus 194 ~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~ 271 (284)
T KOG1457|consen 194 NAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGN 271 (284)
T ss_pred cchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcc
Confidence 00001112346899999999999999999999987555666665556778999999999999999999998
No 57
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.68 E-value=2.9e-16 Score=131.89 Aligned_cols=271 Identities=15% Similarity=0.129 Sum_probs=177.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCC----ceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecc
Q 019152 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGP----VEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (345)
Q Consensus 55 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~----v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (345)
....|..++||+..++.+|..+|+.... +.-+.....+..|.|.|.|.+.+.-+.|+++ +...+.++.+.|-.+.
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka~ 137 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKAT 137 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeeccC
Confidence 3456788999999999999999985422 2112222233458999999999999999865 5666677777775544
Q ss_pred ccC-------------CCCCCCCceeEEECCCCccCCHHHHHHHhccC----CCcceeEeeecCCCCCcccEEEEEeCCH
Q 019152 131 ASG-------------QREDTSGHFNIFVGDLSPEVTDATLFACFSVY----PSCSDARVMWDQKTGRSRGFGFVSFRNQ 193 (345)
Q Consensus 131 ~~~-------------~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~----g~v~~~~~~~~~~~~~~~g~~fv~f~~~ 193 (345)
... ......+.-.|.+++||.++++.++.++|..- |..+.+.++.. .+|+..|-|||.|..+
T Consensus 138 ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~e 216 (508)
T KOG1365|consen 138 GEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACE 216 (508)
T ss_pred chhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCH
Confidence 321 11122234568889999999999999999642 34556655544 5789999999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEEeccCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcc
Q 019152 194 QDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPE 273 (345)
Q Consensus 194 ~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~ 273 (345)
++|..|+.. |...++.|.|.+-.++............ .. ..............+...........+|.+++||+.
T Consensus 217 e~aq~aL~k-hrq~iGqRYIElFRSTaaEvqqvlnr~~-s~---pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~ 291 (508)
T KOG1365|consen 217 EDAQFALRK-HRQNIGQRYIELFRSTAAEVQQVLNREV-SE---PLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYE 291 (508)
T ss_pred HHHHHHHHH-HHHHHhHHHHHHHHHhHHHHHHHHHhhc-cc---cccCCCCCCCCCCCccccCCCCCCCCeeEecCCChh
Confidence 999999985 6666777776664433211100000000 00 000000000000001111111223468999999999
Q ss_pred cCHHHHHHHhhhcCceeeEE--Eeee-----CCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEe
Q 019152 274 VTQLDLHRHFHSLGAGVIEE--VRVQ-----RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHD 336 (345)
Q Consensus 274 ~t~~~L~~~f~~~G~~~i~~--v~i~-----~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~ 336 (345)
.+.++|.++|..|- ..|.. |++. +..|.|||+|.+.+.|..|..+.+++ ...+|-|.|=
T Consensus 292 AtvEdIL~FlgdFa-~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~---~mk~RYiEvf 357 (508)
T KOG1365|consen 292 ATVEDILDFLGDFA-TDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKK---LMKSRYIEVF 357 (508)
T ss_pred hhHHHHHHHHHHHh-hhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHh---hcccceEEEe
Confidence 99999999999885 34444 4432 44799999999999999999999888 6778877763
No 58
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.68 E-value=1.4e-15 Score=126.49 Aligned_cols=192 Identities=17% Similarity=0.237 Sum_probs=137.3
Q ss_pred CceeEEECCCCccCCHHHHHHHhccCCCcc--------eeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 019152 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCS--------DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR 211 (345)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~ 211 (345)
-++.|||.|||.++|.+++.++|+++|.|. .|++.++ ..|..+|=|.+.|-..++...|+..|++..+.|+
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 346799999999999999999999999764 4678888 5699999999999999999999999999999999
Q ss_pred eEEEEeccCCCCCCC--CccCc-cccchhhccCCCCc-CCcCCCCCCCCCCCCCcceEEEcCCCc--c--cC-------H
Q 019152 212 QIRCNWATKGAGNNE--DKQSS-DAKSVVELTNGSSE-DGKETTNTEAPENNPQYTTVYVGNLAP--E--VT-------Q 276 (345)
Q Consensus 212 ~i~v~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~V~nlp~--~--~t-------~ 276 (345)
.|+|+.+.-.....- ..... .............. -...+.. ..+......++|.+.|+=- . .+ .
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~-~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDR-DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCc-cccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 999998754321110 00000 00000000000000 0000000 1222333448999999832 1 12 4
Q ss_pred HHHHHHhhhcCceeeEEEeee--CCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeec
Q 019152 277 LDLHRHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAM 338 (345)
Q Consensus 277 ~~L~~~f~~~G~~~i~~v~i~--~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~ 338 (345)
++|++-+.+|| .+..|.+. .+.|.+.|.|.|.++|..+++.|+|+ +|+||.|.-+.-
T Consensus 291 edl~eec~K~G--~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR---~fdgRql~A~i~ 349 (382)
T KOG1548|consen 291 EDLTEECEKFG--QVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGR---WFDGRQLTASIW 349 (382)
T ss_pred HHHHHHHHHhC--CcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCe---eecceEEEEEEe
Confidence 67788899999 78888776 56899999999999999999999999 999999987653
No 59
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.67 E-value=1.1e-15 Score=117.24 Aligned_cols=81 Identities=25% Similarity=0.451 Sum_probs=74.2
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
...+++|||+|||.++++++|+++|+.||.|.++.++.++ .+|||||+|.+.++|..|+..||+..|.|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3456789999999999999999999999999999999875 468999999999999999999999999999999999
Q ss_pred ccccC
Q 019152 129 AYASG 133 (345)
Q Consensus 129 ~~~~~ 133 (345)
+.++.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 87654
No 60
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=3.4e-16 Score=124.78 Aligned_cols=165 Identities=24% Similarity=0.395 Sum_probs=129.2
Q ss_pred eEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCCC
Q 019152 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 222 (345)
Q Consensus 143 ~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 222 (345)
.+||++||..+.+.+|.++|..||.+..+.+. .||+||+|.+..+|..|+..+++..+.+..+.|+|+....
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 68999999999999999999999999998766 3478999999999999999999999999889999987543
Q ss_pred CCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcce
Q 019152 223 GNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGF 302 (345)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~ 302 (345)
........ +................+.+.|.|++..+.+.+|.+.|.++| .+....+ ..++
T Consensus 75 ~~~g~~~~---------------g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g--~~~~~~~--~~~~ 135 (216)
T KOG0106|consen 75 RGRGRPRG---------------GDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAG--EVTYVDA--RRNF 135 (216)
T ss_pred cccCCCCC---------------CCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccC--CCchhhh--hccc
Confidence 22200000 000000011111122337899999999999999999999999 5544434 5789
Q ss_pred EEEEeCCHHHHHHHHHhhCCCCccccCCceEEEee
Q 019152 303 GFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDA 337 (345)
Q Consensus 303 afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~ 337 (345)
+||+|.+.++|.+|+..|++. .+.+++|.+.+
T Consensus 136 ~~v~Fs~~~da~ra~~~l~~~---~~~~~~l~~~~ 167 (216)
T KOG0106|consen 136 AFVEFSEQEDAKRALEKLDGK---KLNGRRISVEK 167 (216)
T ss_pred cceeehhhhhhhhcchhccch---hhcCceeeecc
Confidence 999999999999999999999 99999999943
No 61
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.66 E-value=8.8e-15 Score=121.73 Aligned_cols=166 Identities=23% Similarity=0.343 Sum_probs=132.8
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCce--------EEEEeecCC---CCeEEEEEeCHHHHHHHHHHhCCCccC
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVE--------GCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLF 120 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~--------~v~~~~~~~---~~~afv~f~~~~~A~~a~~~l~~~~~~ 120 (345)
.+.-...|||+|||.++|.+++.++|+.+|.|. .|++.++.. +|-|++.|...+++..|+.-|++..|.
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 356667799999999999999999999999764 367777653 589999999999999999999999999
Q ss_pred CCceEEeeccccC-----------------------------------CCCCCCCceeEEECCCCc----cCC-------
Q 019152 121 GQPIKVNWAYASG-----------------------------------QREDTSGHFNIFVGDLSP----EVT------- 154 (345)
Q Consensus 121 g~~l~v~~~~~~~-----------------------------------~~~~~~~~~~l~v~~lp~----~~~------- 154 (345)
|+.|+|..+.-.. ........++|.+.|+=. ..+
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 9999998763210 011123346788888621 112
Q ss_pred HHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCC
Q 019152 155 DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (345)
Q Consensus 155 ~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 221 (345)
.++|.+-+.+||.|.+|.+.- ..+.|.+-|.|.+.+.|..||+.|+|++|+||.|.......+
T Consensus 290 kedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 457778899999999997773 356788999999999999999999999999999998876544
No 62
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=6.8e-16 Score=123.07 Aligned_cols=149 Identities=28% Similarity=0.471 Sum_probs=127.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecccc----
Q 019152 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS---- 132 (345)
Q Consensus 57 ~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~---- 132 (345)
..|||++||+.+.+.+|..||..||.+..+.+. .||+||+|.+..+|..|+..|++..|.|-.+.|.|+...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk----~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~ 77 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK----NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGR 77 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee----cccceeccCchhhhhcccchhcCceecceeeeeeccccccccc
Confidence 358999999999999999999999999888763 368999999999999999999999999988888888742
Q ss_pred --CC-----------CCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHH
Q 019152 133 --GQ-----------REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSA 199 (345)
Q Consensus 133 --~~-----------~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a 199 (345)
+. .......+.+.+.+++..+.+.+|.+.|..+|.+..... ..+++||+|...++|..|
T Consensus 78 g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra 149 (216)
T KOG0106|consen 78 GRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRA 149 (216)
T ss_pred CCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhc
Confidence 11 011234577899999999999999999999999955433 244799999999999999
Q ss_pred HHHhCCceeCCeeEEEEe
Q 019152 200 INDLTGKWLGSRQIRCNW 217 (345)
Q Consensus 200 ~~~l~~~~~~~~~i~v~~ 217 (345)
+..|++..+.++.|.+..
T Consensus 150 ~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 150 LEKLDGKKLNGRRISVEK 167 (216)
T ss_pred chhccchhhcCceeeecc
Confidence 999999999999999944
No 63
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=1.2e-15 Score=125.82 Aligned_cols=82 Identities=27% Similarity=0.355 Sum_probs=75.6
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC--CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~--~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
.....++|+|+|||....|.||+.+|.+||.|.+|+|+.+. ++||+||.|.+.+||++|..+|+|..+.||+|.|+.+
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 45667889999999999999999999999999999999853 6899999999999999999999999999999999998
Q ss_pred cccC
Q 019152 130 YASG 133 (345)
Q Consensus 130 ~~~~ 133 (345)
..+-
T Consensus 172 TarV 175 (376)
T KOG0125|consen 172 TARV 175 (376)
T ss_pred chhh
Confidence 7653
No 64
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.61 E-value=1.9e-14 Score=125.33 Aligned_cols=161 Identities=18% Similarity=0.262 Sum_probs=120.6
Q ss_pred CceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 019152 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (345)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 219 (345)
....|.+.+||.++|++||.++|+.+ .|+.+.+.+ .+|+..|-|||+|.+++++.+|++ .+...+..+.|.|--+.
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR--RNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAG 84 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec--cCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccC
Confidence 34578899999999999999999998 677755554 478999999999999999999998 47788899999997665
Q ss_pred CCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEE--eee
Q 019152 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEV--RVQ 297 (345)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v--~i~ 297 (345)
........+.... ......-.|.+++||+++|++||.++|+..- |... .+.
T Consensus 85 ~~e~d~~~~~~g~------------------------~s~~~d~vVRLRGLPfscte~dI~~FFaGL~---Iv~~gi~l~ 137 (510)
T KOG4211|consen 85 GAEADWVMRPGGP------------------------NSSANDGVVRLRGLPFSCTEEDIVEFFAGLE---IVPDGILLP 137 (510)
T ss_pred CccccccccCCCC------------------------CCCCCCceEEecCCCccCcHHHHHHHhcCCc---ccccceeee
Confidence 4332111110000 0001225799999999999999999999763 3333 222
Q ss_pred -----CCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEE
Q 019152 298 -----RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKH 335 (345)
Q Consensus 298 -----~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v 335 (345)
+..+.|||.|++.+.|++|+.. |.. .|+.|-|.|
T Consensus 138 ~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre---~iGhRYIEv 176 (510)
T KOG4211|consen 138 MDQRGRPTGEAFVQFESQESAEIALGR-HRE---NIGHRYIEV 176 (510)
T ss_pred ccCCCCcccceEEEecCHHHHHHHHHH-HHH---hhccceEEe
Confidence 3368999999999999999976 334 578777766
No 65
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.61 E-value=5.2e-14 Score=120.49 Aligned_cols=197 Identities=18% Similarity=0.224 Sum_probs=140.2
Q ss_pred ceeEEECCCCccCCHHHHHHHhc-cCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 019152 141 HFNIFVGDLSPEVTDATLFACFS-VYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (345)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~-~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 219 (345)
.+.+||+|||.++.|.+|+++|. +.|+|+.|.++.| ..|+++|+|.|+|+++|.+++|++.|+...+.||+|.|.-..
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 35699999999999999999995 5799999999999 689999999999999999999999999999999999997543
Q ss_pred CCCCCC----------CC----------ccCc---------cccchhhccCCCCcCCc---------------------C
Q 019152 220 KGAGNN----------ED----------KQSS---------DAKSVVELTNGSSEDGK---------------------E 249 (345)
Q Consensus 220 ~~~~~~----------~~----------~~~~---------~~~~~~~~~~~~~~~~~---------------------~ 249 (345)
...... .. .... ............+.... .
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 211000 00 0000 00000000000000000 0
Q ss_pred CCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeee--C---CcceEEEEeCCHHHHHHHHHhhCCCC
Q 019152 250 TTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ--R---DKGFGFVRYSTHAEAALAIQMGNTTQ 324 (345)
Q Consensus 250 ~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~--~---~~~~afV~f~~~~~A~~Al~~l~~~~ 324 (345)
...+......|-...+||.||.+.+....|++.|.-.| .+..|-+. + +++++.++|+++-+|..|+..+++.
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAG--kv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~- 279 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAG--KVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQ- 279 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccce--eeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccC-
Confidence 00000011223345799999999999999999999988 67777553 2 3799999999999999999999987
Q ss_pred ccccCCceEEEeecccccc
Q 019152 325 SSYLFGKQMKHDAMCGTLC 343 (345)
Q Consensus 325 ~~~~~g~~l~v~~~~~~~~ 343 (345)
-+..++..+.+.+....
T Consensus 280 --g~~~~~~~~Rl~~~~Dr 296 (608)
T KOG4212|consen 280 --GLFDRRMTVRLDRIPDR 296 (608)
T ss_pred --CCccccceeeccccccc
Confidence 78888888887655433
No 66
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=6.3e-15 Score=116.95 Aligned_cols=83 Identities=28% Similarity=0.483 Sum_probs=79.7
Q ss_pred CCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 019152 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (345)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 218 (345)
.+.++|.|.||+.++++.+|+++|.+||.|..+.+.+|+.+|.++|||||.|.+.++|.+||..|+|.-+.+-.|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 019152 219 TKG 221 (345)
Q Consensus 219 ~~~ 221 (345)
+++
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 875
No 67
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.58 E-value=5.9e-15 Score=99.61 Aligned_cols=67 Identities=34% Similarity=0.652 Sum_probs=62.5
Q ss_pred EEEeCCCCCCCHHHHHHHHhccCCceEEEEeec---CCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceE
Q 019152 59 VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK---DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIK 125 (345)
Q Consensus 59 l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~---~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~ 125 (345)
|||+|||.++|+++|+++|+.||.|..+.+..+ ..+++|||+|.+.++|.+|+..++|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999986 2358999999999999999999999999998875
No 68
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.57 E-value=1.6e-14 Score=97.40 Aligned_cols=70 Identities=37% Similarity=0.769 Sum_probs=66.8
Q ss_pred EEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 019152 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (345)
Q Consensus 144 l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~ 214 (345)
|||+|||.++++++|+++|+.||.+..+.+..+ .++..+++|||+|.+.++|.+|++.+++..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999987 6789999999999999999999999999999999875
No 69
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.57 E-value=2.3e-14 Score=117.48 Aligned_cols=76 Identities=26% Similarity=0.425 Sum_probs=70.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC-CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecccc
Q 019152 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (345)
Q Consensus 56 ~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~-~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (345)
.++|||+|||+.+|+++|+++|+.||.|.+|.|..++ ++|||||+|.+.++|..|+. |+|..|.|+.|+|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 4789999999999999999999999999999999887 46999999999999999994 9999999999999998644
No 70
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=1.3e-14 Score=109.32 Aligned_cols=78 Identities=28% Similarity=0.527 Sum_probs=72.1
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccccCC
Q 019152 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQ 134 (345)
Q Consensus 56 ~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 134 (345)
.+.|||+||+..+++.||...|..||+|.+|||-. ...|||||+|.++.+|..|+..|+|..|.|..++|+.+.....
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 57799999999999999999999999999999988 4458999999999999999999999999999999999876543
No 71
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=6.2e-14 Score=96.05 Aligned_cols=83 Identities=18% Similarity=0.274 Sum_probs=74.8
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC-CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 51 FDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 51 ~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~-~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
..|...+-|||+|||..+|.+++.++|.+||.|..|++-..+ ++|.|||.|.+..+|++|+..|+|..+.++.+.|.+.
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 345667889999999999999999999999999999997765 4699999999999999999999999999999999987
Q ss_pred cccC
Q 019152 130 YASG 133 (345)
Q Consensus 130 ~~~~ 133 (345)
.+..
T Consensus 93 q~~~ 96 (124)
T KOG0114|consen 93 QPED 96 (124)
T ss_pred CHHH
Confidence 6543
No 72
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=3.6e-14 Score=101.14 Aligned_cols=77 Identities=27% Similarity=0.505 Sum_probs=70.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCC----CeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS----SYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 54 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~----~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
..++||||+||+..++|+.|+++|+.+|+|..|.|--|+.+ |||||+|.+.++|..|++.++|..+..+.|++.|-
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 45789999999999999999999999999999988777643 89999999999999999999999999999999876
Q ss_pred c
Q 019152 130 Y 130 (345)
Q Consensus 130 ~ 130 (345)
.
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 4
No 73
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=3.7e-14 Score=101.10 Aligned_cols=81 Identities=26% Similarity=0.458 Sum_probs=75.9
Q ss_pred CceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 019152 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (345)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 219 (345)
.+++|||+||+..++|+.|.++|+++|+|..|.+-.|+.+..+.|||||+|-+.++|..|++.+++..++.++|++.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 35799999999999999999999999999999998888888999999999999999999999999999999999999864
Q ss_pred C
Q 019152 220 K 220 (345)
Q Consensus 220 ~ 220 (345)
.
T Consensus 115 G 115 (153)
T KOG0121|consen 115 G 115 (153)
T ss_pred c
Confidence 3
No 74
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=6.4e-13 Score=117.67 Aligned_cols=161 Identities=20% Similarity=0.187 Sum_probs=108.7
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccc
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (345)
...+.++|+|.|||..+++++|+.+|+.||+|..|.....+ .+..||+|.|..+|+.|+++|++..+.|+.++......
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~-~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~ 149 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK-RGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGAR 149 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc-CceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCccc
Confidence 35667899999999999999999999999999997664433 48999999999999999999999999999888222111
Q ss_pred cC-------------------CCCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCC
Q 019152 132 SG-------------------QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN 192 (345)
Q Consensus 132 ~~-------------------~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~ 192 (345)
.. .....-+...++. .|++..+..-+...+.-+|.+.. +. ++.-..--|+.|.+
T Consensus 150 ~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~~-----~~~~~hq~~~~~~~ 222 (549)
T KOG4660|consen 150 RAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHISSVDGSSPG-RE-----TPLLNHQRFVEFAD 222 (549)
T ss_pred ccchhcccchhhhhccchhhcCCCCCCcCCccee-eeccchhhhhhhcchhccCcccc-cc-----ccchhhhhhhhhcc
Confidence 10 0000111123333 37777776555555565666554 21 22212246778888
Q ss_pred HHHHHHHHHHhCCceeCCeeEEEEeccCC
Q 019152 193 QQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (345)
Q Consensus 193 ~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 221 (345)
..++..+.... |..+.+....+.++...
T Consensus 223 ~~s~a~~~~~~-G~~~s~~~~v~t~S~~~ 250 (549)
T KOG4660|consen 223 NRSYAFSEPRG-GFLISNSSGVITFSGPG 250 (549)
T ss_pred ccchhhcccCC-ceecCCCCceEEecCCC
Confidence 88876555533 66666666666666553
No 75
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.50 E-value=7.3e-14 Score=94.13 Aligned_cols=67 Identities=31% Similarity=0.600 Sum_probs=60.7
Q ss_pred EEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC---CCeEEEEEeCHHHHHHHHHHhCCCccCCCceE
Q 019152 59 VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIK 125 (345)
Q Consensus 59 l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~---~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~ 125 (345)
|||+|||+++++++|+++|+.||.|..+.+..++. +++|||+|.+.++|.+|+..+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999998763 68999999999999999999999999998874
No 76
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=2.5e-13 Score=108.00 Aligned_cols=80 Identities=29% Similarity=0.455 Sum_probs=74.6
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
..+..+|.|.||+.+++|++|+++|.+||.|.++.+.+++. +|||||.|.+.++|.+|+..|||.-+..--|+|.|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 44677899999999999999999999999999999999875 58999999999999999999999999999999999
Q ss_pred cccc
Q 019152 129 AYAS 132 (345)
Q Consensus 129 ~~~~ 132 (345)
+.|+
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9875
No 77
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.50 E-value=1.6e-13 Score=92.49 Aligned_cols=70 Identities=33% Similarity=0.671 Sum_probs=64.3
Q ss_pred EEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 019152 144 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (345)
Q Consensus 144 l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~ 214 (345)
|||+|||.++++++|+++|+.||.|..+.+..++. +..+++|||+|.+.++|.+|+..+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999998865 89999999999999999999999999999999874
No 78
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=5.6e-15 Score=111.85 Aligned_cols=87 Identities=28% Similarity=0.521 Sum_probs=80.5
Q ss_pred CCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 019152 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (345)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 218 (345)
.++..|||||||..+||.||.-.|+.||+|..|.+++|+.||+++||||+.|++.++...|+..|||..+.||.|+|.+.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCCCC
Q 019152 219 TKGAGNN 225 (345)
Q Consensus 219 ~~~~~~~ 225 (345)
.....+.
T Consensus 113 ~~Yk~pk 119 (219)
T KOG0126|consen 113 SNYKKPK 119 (219)
T ss_pred ccccCCc
Confidence 6555443
No 79
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=1.7e-13 Score=93.91 Aligned_cols=70 Identities=20% Similarity=0.267 Sum_probs=66.4
Q ss_pred ceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC---cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEee
Q 019152 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDA 337 (345)
Q Consensus 263 ~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~---~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~ 337 (345)
+.|||+|||+++|.+++.++|.+|| .|..|+|... +|.|||.|++..+|.+|++.|+|. .+.++.|.|-|
T Consensus 19 riLyirNLp~~ITseemydlFGkyg--~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~---n~~~ryl~vly 91 (124)
T KOG0114|consen 19 RILYIRNLPFKITSEEMYDLFGKYG--TIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGY---NVDNRYLVVLY 91 (124)
T ss_pred eeEEEecCCccccHHHHHHHhhccc--ceEEEEecCccCcCceEEEEehHhhhHHHHHHHhccc---ccCCceEEEEe
Confidence 7899999999999999999999999 7999999865 799999999999999999999999 99999999876
No 80
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=5.3e-13 Score=119.31 Aligned_cols=169 Identities=20% Similarity=0.352 Sum_probs=131.0
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
+.....++|++||..++++.+.+++..||++....++.+. ++||||.+|.++.....|+..|||..+.++.+.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 4456779999999999999999999999999999998875 368999999999999999999999999999999987
Q ss_pred ccccCCCCC---------------------CCCceeEEECCCC--cc-CCH-------HHHHHHhccCCCcceeEeeecC
Q 019152 129 AYASGQRED---------------------TSGHFNIFVGDLS--PE-VTD-------ATLFACFSVYPSCSDARVMWDQ 177 (345)
Q Consensus 129 ~~~~~~~~~---------------------~~~~~~l~v~~lp--~~-~~~-------~~l~~~f~~~g~v~~~~~~~~~ 177 (345)
+........ ..+...|.+.|+= .. .++ ++++.-+.+||.|..|.+.++.
T Consensus 366 A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~ 445 (500)
T KOG0120|consen 366 AIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPY 445 (500)
T ss_pred hhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCC
Confidence 755432111 1112223333321 00 112 3555667789999999988762
Q ss_pred C---CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCC
Q 019152 178 K---TGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (345)
Q Consensus 178 ~---~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 221 (345)
. .....|-.||+|.+.+++.+|+..|+|..|.|+.+...|-...
T Consensus 446 ~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 446 PDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred CCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 2 2345677999999999999999999999999999999986543
No 81
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.48 E-value=1.9e-13 Score=112.17 Aligned_cols=73 Identities=21% Similarity=0.274 Sum_probs=67.9
Q ss_pred cceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC---cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeec
Q 019152 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAM 338 (345)
Q Consensus 262 ~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~---~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~ 338 (345)
.++|||+|||+.+|+++|+++|+.|| .|.+|.|.++ +++|||+|.+.++|..|+ .|+|. .|.|+.|+|.++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G--~I~~V~I~~d~~~~GfAFVtF~d~eaAe~Al-lLnG~---~l~gr~V~Vt~a 77 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSG--DIEYVEMQSENERSQIAYVTFKDPQGAETAL-LLSGA---TIVDQSVTITPA 77 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEeecCCCCCEEEEEeCcHHHHHHHH-HhcCC---eeCCceEEEEec
Confidence 37899999999999999999999999 8999999865 689999999999999999 59999 999999999998
Q ss_pred cc
Q 019152 339 CG 340 (345)
Q Consensus 339 ~~ 340 (345)
.+
T Consensus 78 ~~ 79 (260)
T PLN03120 78 ED 79 (260)
T ss_pred cC
Confidence 74
No 82
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=6.9e-14 Score=110.72 Aligned_cols=79 Identities=38% Similarity=0.628 Sum_probs=73.3
Q ss_pred eeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCC
Q 019152 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (345)
Q Consensus 142 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 221 (345)
++|||+||+..+..++|++.|+.||+|.+..++.|+.+|+++||+||+|++.++|.+|++. .+-.|+||+..++++...
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~lg 91 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASLG 91 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhhc
Confidence 5899999999999999999999999999999999999999999999999999999999985 455689999999987663
No 83
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=1.2e-13 Score=114.31 Aligned_cols=75 Identities=24% Similarity=0.336 Sum_probs=69.3
Q ss_pred cceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC----cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEee
Q 019152 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDA 337 (345)
Q Consensus 262 ~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~----~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~ 337 (345)
.++|+|.|||+.+.|-||+.+|.+|| .|.+|.|..+ ||||||+|++.++|.+|..+|||. .+.||+|.|..
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG--~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt---~VEGRkIEVn~ 170 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFG--KVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGT---VVEGRKIEVNN 170 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhC--ceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcc---eeeceEEEEec
Confidence 37899999999999999999999999 8999988743 899999999999999999999999 99999999998
Q ss_pred cccc
Q 019152 338 MCGT 341 (345)
Q Consensus 338 ~~~~ 341 (345)
+..+
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 7654
No 84
>PLN03213 repressor of silencing 3; Provisional
Probab=99.45 E-value=3.4e-13 Score=117.36 Aligned_cols=77 Identities=21% Similarity=0.321 Sum_probs=72.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCH--HHHHHHHHHhCCCccCCCceEEeeccc
Q 019152 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDR--RSAAMAILSLNGRHLFGQPIKVNWAYA 131 (345)
Q Consensus 55 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~--~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (345)
...+||||||++.+++++|...|..||.|.+|.|++...+|||||+|.+. .++.+|+..|||..+.|+.|+|+.+.+
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 34679999999999999999999999999999999888899999999987 789999999999999999999998865
No 85
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.45 E-value=2.5e-12 Score=111.84 Aligned_cols=145 Identities=28% Similarity=0.414 Sum_probs=111.2
Q ss_pred ceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 019152 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (345)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 220 (345)
.++|||+|||..+++++|.++|..||.+..+.+..++.++.++|+|||+|.+.++|..|+..+++..+.|+.+.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999999999999988999999999999999999999999999999999999999754
Q ss_pred -CCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC
Q 019152 221 -GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 299 (345)
Q Consensus 221 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~ 299 (345)
.......... ......................+++.+++..++..++...|..+| .+....+...
T Consensus 195 ~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 260 (306)
T COG0724 195 ASQPRSELSNN------------LDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRG--DIVRASLPPS 260 (306)
T ss_pred ccccccccccc------------cchhhhccccccccccccccceeeccccccccchhHHHHhccccc--cceeeeccCC
Confidence 1111111000 000000000122223334557899999999999999999999999 5555555443
No 86
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.1e-13 Score=108.14 Aligned_cols=87 Identities=32% Similarity=0.507 Sum_probs=81.6
Q ss_pred CceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 019152 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (345)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 219 (345)
..++|||++|...+++.-|...|-+||.|..+.++.|..+++++||+||+|...|+|.+||..|++..+.||.|+|+++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCC
Q 019152 220 KGAGNNE 226 (345)
Q Consensus 220 ~~~~~~~ 226 (345)
+.+....
T Consensus 89 P~kikeg 95 (298)
T KOG0111|consen 89 PEKIKEG 95 (298)
T ss_pred CccccCC
Confidence 8765443
No 87
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=4e-13 Score=101.38 Aligned_cols=76 Identities=30% Similarity=0.507 Sum_probs=68.6
Q ss_pred cceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeC-CcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeeccc
Q 019152 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR-DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCG 340 (345)
Q Consensus 262 ~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~-~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~ 340 (345)
.+.|||+||+..+++.||..+|..|| .+..|-|.+ +.|||||+|++..+|..|+..|+|+ .|+|..|+|+++.+
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG--~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~---~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYG--PLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGK---DICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcC--cceeEEEeecCCCceEEeccCcccHHHHHhhcCCc---cccCceEEEEeecC
Confidence 37899999999999999999999999 677776654 4799999999999999999999999 99999999999876
Q ss_pred cc
Q 019152 341 TL 342 (345)
Q Consensus 341 ~~ 342 (345)
.-
T Consensus 85 ~~ 86 (195)
T KOG0107|consen 85 RP 86 (195)
T ss_pred Cc
Confidence 43
No 88
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.42 E-value=2.6e-12 Score=111.73 Aligned_cols=121 Identities=28% Similarity=0.429 Sum_probs=103.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccc
Q 019152 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (345)
Q Consensus 56 ~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (345)
.++|||+|||.++++++|+++|..||.|..+.+..++ .+|+|||+|.+.++|..|+..++|..|.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5899999999999999999999999999999998875 469999999999999999999999999999999999542
Q ss_pred ----cCCC-----------------CCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeec
Q 019152 132 ----SGQR-----------------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWD 176 (345)
Q Consensus 132 ----~~~~-----------------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~ 176 (345)
.... ........+++.+++..++..++...|..+|.+....+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCC
Confidence 1111 11233467999999999999999999999999966655543
No 89
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=1.1e-12 Score=107.22 Aligned_cols=85 Identities=22% Similarity=0.400 Sum_probs=79.2
Q ss_pred CCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 019152 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (345)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~ 216 (345)
..++-.+|||+-|+.+++|..|++.|+.||.|+.+.+++++.+|+++|||||+|+++.+...|.+..+|..|+|+.|.|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 33556799999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eccCC
Q 019152 217 WATKG 221 (345)
Q Consensus 217 ~~~~~ 221 (345)
+-...
T Consensus 177 vERgR 181 (335)
T KOG0113|consen 177 VERGR 181 (335)
T ss_pred ecccc
Confidence 76443
No 90
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.42 E-value=1.2e-12 Score=105.67 Aligned_cols=77 Identities=19% Similarity=0.288 Sum_probs=70.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC-CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecccc
Q 019152 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (345)
Q Consensus 55 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~-~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (345)
...+|+|+||++.+|+++|++||+.||.|.+|.|++++. +++|||+|.++++|..|+ .|+|..|.++.|.|......
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQY 81 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCccc
Confidence 347899999999999999999999999999999999864 479999999999999998 69999999999999876543
No 91
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.41 E-value=3.3e-13 Score=120.03 Aligned_cols=82 Identities=30% Similarity=0.620 Sum_probs=79.1
Q ss_pred eeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCC
Q 019152 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (345)
Q Consensus 142 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 221 (345)
+.+||||+|.++++++|..+|+..|.|.+++++.|+.+|+++||+|++|.+.++|..|++.|+|..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999998776
Q ss_pred CC
Q 019152 222 AG 223 (345)
Q Consensus 222 ~~ 223 (345)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 54
No 92
>smart00362 RRM_2 RNA recognition motif.
Probab=99.41 E-value=1.5e-12 Score=87.92 Aligned_cols=70 Identities=36% Similarity=0.668 Sum_probs=64.2
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC--CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEe
Q 019152 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (345)
Q Consensus 58 ~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~--~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (345)
+|+|+|||..+++++|+++|+.||.|..+.+..+. .+++|||+|.+.++|..|+..+++..+.|+.+.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999888765 46899999999999999999999999999888763
No 93
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=1.3e-12 Score=103.64 Aligned_cols=79 Identities=20% Similarity=0.341 Sum_probs=69.1
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
+..-++|||+||++.+..+.|+++|+.||+|.+..++.|+ ++||+||.|.+.++|.+|++. -+-.|+||+..++.
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnl 87 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNL 87 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccch
Confidence 3445679999999999999999999999999999999986 468999999999999999975 35688999999888
Q ss_pred cccc
Q 019152 129 AYAS 132 (345)
Q Consensus 129 ~~~~ 132 (345)
+.-.
T Consensus 88 A~lg 91 (247)
T KOG0149|consen 88 ASLG 91 (247)
T ss_pred hhhc
Confidence 7653
No 94
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.38 E-value=2.6e-12 Score=82.18 Aligned_cols=55 Identities=25% Similarity=0.491 Sum_probs=51.6
Q ss_pred HHHHhhhcCceeeEEEeeeCCc-ceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeec
Q 019152 279 LHRHFHSLGAGVIEEVRVQRDK-GFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAM 338 (345)
Q Consensus 279 L~~~f~~~G~~~i~~v~i~~~~-~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~ 338 (345)
|+++|++|| .|..+.+.+++ ++|||+|.+.++|.+|++.|||. .++|++|+|+||
T Consensus 1 L~~~f~~fG--~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~---~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFG--EVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGR---QFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS---EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTS---EETTEEEEEEEE
T ss_pred ChHHhCCcc--cEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCC---EECCcEEEEEEC
Confidence 678999999 89999999887 99999999999999999999999 999999999996
No 95
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.38 E-value=1.4e-11 Score=111.61 Aligned_cols=188 Identities=11% Similarity=0.020 Sum_probs=122.4
Q ss_pred eeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCC
Q 019152 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (345)
Q Consensus 142 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 221 (345)
+.+-+.+.+.+.++.+++++|... .+....+..+...+...|.++|.|....++.+|++. +...+-.|.+.+......
T Consensus 312 ~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~~ 389 (944)
T KOG4307|consen 312 YYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGNL 389 (944)
T ss_pred heeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCcc
Confidence 445567888999999999998653 355555655555555578899999999999999874 555566777777554332
Q ss_pred CCCCCCccCc-----cccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEE-Ee
Q 019152 222 AGNNEDKQSS-----DAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE-VR 295 (345)
Q Consensus 222 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~-v~ 295 (345)
.-........ .......... ...+.........+...+.+.+|||..||..+++.++.++|...- .|++ |.
T Consensus 390 ~~~~a~~~~~~~~~~~~~~~hg~p~-~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~--~Ved~I~ 466 (944)
T KOG4307|consen 390 GRNGAPPFQAGVPPPVIQNNHGRPI-APPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAA--AVEDFIE 466 (944)
T ss_pred ccccCccccccCCCCcccccCCCCC-CCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhh--hhhheeE
Confidence 2111000000 0000000000 111111122223445556678999999999999999999999764 3444 55
Q ss_pred eeCC-----cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEee
Q 019152 296 VQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDA 337 (345)
Q Consensus 296 i~~~-----~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~ 337 (345)
|.+. ++.|||.|.+++++.+|..--+.+ +++.|.|+|.-
T Consensus 467 lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~---y~G~r~irv~s 510 (944)
T KOG4307|consen 467 LTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKF---YPGHRIIRVDS 510 (944)
T ss_pred eccCCcccccchhhheeccccccchhhhccccc---ccCceEEEeec
Confidence 5432 689999999999999988665666 89999999853
No 96
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.36 E-value=3.1e-12 Score=81.83 Aligned_cols=56 Identities=36% Similarity=0.650 Sum_probs=51.5
Q ss_pred HHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 73 LQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 73 l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
|+++|++||.|.++.+.+++ +++|||+|.+.++|..|+..|||..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997776 689999999999999999999999999999999985
No 97
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.36 E-value=1.3e-12 Score=101.17 Aligned_cols=74 Identities=28% Similarity=0.468 Sum_probs=69.5
Q ss_pred CcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC------cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEE
Q 019152 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (345)
Q Consensus 261 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~------~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~ 334 (345)
...+|.|.||.+-++.++|+.+|++|| .|-+|.|+++ +|||||.|....+|+.|+++|+|. .++|+.|.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG--~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~---~ldgRelr 86 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYG--RVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGA---VLDGRELR 86 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhC--cccceecccccccccccceeEEEeeecchHHHHHHhhcce---eeccceee
Confidence 347899999999999999999999999 8999999976 799999999999999999999999 99999999
Q ss_pred Eeecc
Q 019152 335 HDAMC 339 (345)
Q Consensus 335 v~~~~ 339 (345)
|.+|+
T Consensus 87 Vq~ar 91 (256)
T KOG4207|consen 87 VQMAR 91 (256)
T ss_pred ehhhh
Confidence 98875
No 98
>smart00362 RRM_2 RNA recognition motif.
Probab=99.35 E-value=6.9e-12 Score=84.63 Aligned_cols=71 Identities=39% Similarity=0.741 Sum_probs=66.1
Q ss_pred eEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 019152 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (345)
Q Consensus 143 ~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v 215 (345)
+|||+|||..+++++|+++|..||.+..+.+..++ +.++++|||+|.+.+.|.+|+..+++..+.|+.+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 48999999999999999999999999999888775 678899999999999999999999999999998876
No 99
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.35 E-value=8.1e-12 Score=84.78 Aligned_cols=71 Identities=35% Similarity=0.703 Sum_probs=65.9
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC---CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 58 ~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~---~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
+|+|+|||..+++++|+++|+.||.|..+.+..+.. .++|||+|.+.++|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999999998763 68999999999999999999999999999998864
No 100
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.34 E-value=2.2e-12 Score=99.98 Aligned_cols=84 Identities=30% Similarity=0.497 Sum_probs=78.2
Q ss_pred CCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 019152 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (345)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 218 (345)
..-..|.|-||-.-++.++|+.+|++||.|-+|.|.+|+.++.++|||||.|.+..+|+.|+++|+|..++|+.|.|.++
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 34468999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cCCC
Q 019152 219 TKGA 222 (345)
Q Consensus 219 ~~~~ 222 (345)
.-..
T Consensus 91 rygr 94 (256)
T KOG4207|consen 91 RYGR 94 (256)
T ss_pred hcCC
Confidence 5443
No 101
>PLN03213 repressor of silencing 3; Provisional
Probab=99.34 E-value=4.4e-12 Score=110.53 Aligned_cols=78 Identities=19% Similarity=0.343 Sum_probs=71.2
Q ss_pred CCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCH--HHHHHHHHHhCCceeCCeeEEEE
Q 019152 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQ--QDAQSAINDLTGKWLGSRQIRCN 216 (345)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~--~~a~~a~~~l~~~~~~~~~i~v~ 216 (345)
....+||||||+..+++++|...|..||.|..+.|++ .+| +|||||+|.+. .++.+||..|+|..|.|+.|+|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 4457899999999999999999999999999999994 456 99999999987 68999999999999999999999
Q ss_pred eccC
Q 019152 217 WATK 220 (345)
Q Consensus 217 ~~~~ 220 (345)
.+++
T Consensus 84 KAKP 87 (759)
T PLN03213 84 KAKE 87 (759)
T ss_pred eccH
Confidence 8755
No 102
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.32 E-value=6.8e-12 Score=105.98 Aligned_cols=161 Identities=17% Similarity=0.200 Sum_probs=119.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhc---c-CCceEEEEeec---CCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 56 CRSVYVGNIHTQVTEPLLQEVFSS---T-GPVEGCKLIRK---DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 56 ~~~l~v~~lp~~~t~~~l~~~f~~---~-G~v~~v~~~~~---~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
---|.++|||+++++.++.+||.. . |..+.|.+++. +.+|-|||.|..+++|..|+.+ +...++-+.|.+-.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFR 239 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFR 239 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHH
Confidence 345789999999999999999962 2 24556666654 3479999999999999999965 33333333333211
Q ss_pred ccc----------------------------cCCCCCCCCceeEEECCCCccCCHHHHHHHhccCCC-cce--eEeeecC
Q 019152 129 AYA----------------------------SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPS-CSD--ARVMWDQ 177 (345)
Q Consensus 129 ~~~----------------------------~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~-v~~--~~~~~~~ 177 (345)
+.. ...........+|.+++||...+.++|..+|..|.. |.. +.+..+
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N- 318 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN- 318 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-
Confidence 110 000111233569999999999999999999999864 333 666666
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 019152 178 KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (345)
Q Consensus 178 ~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 218 (345)
..|++.|-|||+|.+.++|..|...++++..++|.|.|-..
T Consensus 319 ~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 319 GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 57899999999999999999999999998888999998654
No 103
>smart00360 RRM RNA recognition motif.
Probab=99.31 E-value=9.2e-12 Score=83.72 Aligned_cols=67 Identities=37% Similarity=0.681 Sum_probs=61.5
Q ss_pred EeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEe
Q 019152 61 VGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (345)
Q Consensus 61 v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (345)
|+|||..+++++|+++|+.||.|..+.+..++. +++|||+|.+.++|..|+..+++..+.|+.++|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 579999999999999999999999999988754 6899999999999999999999999999988763
No 104
>smart00360 RRM RNA recognition motif.
Probab=99.31 E-value=1.1e-11 Score=83.35 Aligned_cols=70 Identities=39% Similarity=0.719 Sum_probs=65.6
Q ss_pred ECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 019152 146 VGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (345)
Q Consensus 146 v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v 215 (345)
|+|||..+++++|+++|+.||.|..+.+..++.++.++++|||+|.+.++|..|+..+++..+.|+.+.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 5799999999999999999999999999988777899999999999999999999999999999998876
No 105
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=1.3e-11 Score=101.06 Aligned_cols=79 Identities=23% Similarity=0.426 Sum_probs=72.7
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEe
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (345)
...+-+||||+-|+++++|..|+..|+.||+|..|.|++++ ++|||||+|.++.+...|.+..+|..|.|+.|.|-
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 45677999999999999999999999999999999999984 56999999999999999999999999999999987
Q ss_pred ecc
Q 019152 128 WAY 130 (345)
Q Consensus 128 ~~~ 130 (345)
+-.
T Consensus 177 vER 179 (335)
T KOG0113|consen 177 VER 179 (335)
T ss_pred ecc
Confidence 653
No 106
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.9e-12 Score=101.15 Aligned_cols=80 Identities=30% Similarity=0.530 Sum_probs=74.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeec----CCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecc
Q 019152 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (345)
Q Consensus 55 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~----~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (345)
..++|||++|...++|.-|...|-+||.|..|++..| +.+|||||+|...|+|..|+..+|+..|.|+.|+|+++.
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 4589999999999999999999999999999999775 457999999999999999999999999999999999998
Q ss_pred ccCC
Q 019152 131 ASGQ 134 (345)
Q Consensus 131 ~~~~ 134 (345)
|...
T Consensus 89 P~ki 92 (298)
T KOG0111|consen 89 PEKI 92 (298)
T ss_pred Cccc
Confidence 7653
No 107
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.30 E-value=2.2e-11 Score=98.36 Aligned_cols=77 Identities=18% Similarity=0.342 Sum_probs=69.8
Q ss_pred CceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 019152 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (345)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 219 (345)
...+|||+||++.+++++|+++|+.||.|.++.+.++ +...++|||+|.+++++..|+. |+|..|.+++|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 3479999999999999999999999999999999977 3556799999999999999995 99999999999998765
Q ss_pred C
Q 019152 220 K 220 (345)
Q Consensus 220 ~ 220 (345)
.
T Consensus 80 ~ 80 (243)
T PLN03121 80 Q 80 (243)
T ss_pred c
Confidence 4
No 108
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=6.4e-11 Score=104.33 Aligned_cols=151 Identities=21% Similarity=0.273 Sum_probs=114.2
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC------CCC---eEEEEEeCHHHHHHHHHHhCC----Cc
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD------KSS---YGFIHYFDRRSAAMAILSLNG----RH 118 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~------~~~---~afv~f~~~~~A~~a~~~l~~----~~ 118 (345)
.+.-++.|||++||++++|+.|...|..||.+.-=+-.+.. .+| |+|+.|.++.++..-+.+..- .+
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~y 334 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYY 334 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceE
Confidence 34557789999999999999999999999987433332211 235 999999999998887765421 11
Q ss_pred c-------CCCceEEeecccc------CCCCCCCCceeEEECCCCccCCHHHHHHHhc-cCCCcceeEeeecCCCCCccc
Q 019152 119 L-------FGQPIKVNWAYAS------GQREDTSGHFNIFVGDLSPEVTDATLFACFS-VYPSCSDARVMWDQKTGRSRG 184 (345)
Q Consensus 119 ~-------~g~~l~v~~~~~~------~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~-~~g~v~~~~~~~~~~~~~~~g 184 (345)
| ..+.+.|.+-... ......++.++||||+||.-++.++|..+|+ -||.|..+-|-.|++-+-++|
T Consensus 335 f~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkG 414 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKG 414 (520)
T ss_pred EEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCC
Confidence 1 1222333321110 1223446678999999999999999999998 699999999999988888999
Q ss_pred EEEEEeCCHHHHHHHHHH
Q 019152 185 FGFVSFRNQQDAQSAIND 202 (345)
Q Consensus 185 ~~fv~f~~~~~a~~a~~~ 202 (345)
-|-|.|.+..+-.+||.+
T Consensus 415 aGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 415 AGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cceeeecccHHHHHHHhh
Confidence 999999999999999974
No 109
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.29 E-value=1.3e-10 Score=102.33 Aligned_cols=164 Identities=21% Similarity=0.260 Sum_probs=107.5
Q ss_pred CCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecC---CCCCccc---EEEEEeCCHHHHHHHHHHhCCceeCCe
Q 019152 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQ---KTGRSRG---FGFVSFRNQQDAQSAINDLTGKWLGSR 211 (345)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~---~~~~~~g---~~fv~f~~~~~a~~a~~~l~~~~~~~~ 211 (345)
...++.||||+||.+++|+.|...|..||.+.-- +.... ..-.++| |+|+.|+++.....-+.++.- +..
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~Vd-WP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~ 331 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVD-WPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEG 331 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEee-cCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---ccc
Confidence 3446889999999999999999999999986432 22110 1123556 999999999998887776543 333
Q ss_pred eEEEEeccCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhh-hcCcee
Q 019152 212 QIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH-SLGAGV 290 (345)
Q Consensus 212 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~-~~G~~~ 290 (345)
...+..+.+....... ...++.......... ......+.+||||++||..++.++|-.+|+ -|| .
T Consensus 332 ~~yf~vss~~~k~k~V----QIrPW~laDs~fv~d--------~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyG--g 397 (520)
T KOG0129|consen 332 NYYFKVSSPTIKDKEV----QIRPWVLADSDFVLD--------HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFG--G 397 (520)
T ss_pred ceEEEEecCcccccce----eEEeeEeccchhhhc--------cCcccCccceEEecCCCCcchHHHHHHHHHHhcC--c
Confidence 3333332221111100 000111000000000 111223458999999999999999999999 899 5
Q ss_pred eEEEeeeCC------cceEEEEeCCHHHHHHHHHh
Q 019152 291 IEEVRVQRD------KGFGFVRYSTHAEAALAIQM 319 (345)
Q Consensus 291 i~~v~i~~~------~~~afV~f~~~~~A~~Al~~ 319 (345)
|..+.|.-| +|.|-|+|.+..+..+||.+
T Consensus 398 V~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 398 VLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred eEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 777766644 89999999999999999964
No 110
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=1.2e-11 Score=89.19 Aligned_cols=79 Identities=27% Similarity=0.547 Sum_probs=72.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccc
Q 019152 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (345)
Q Consensus 56 ~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (345)
.--|||.|+...++|++|.+.|..||+|..|.+..|+. +|||+|+|.+.+.|..|+..+||..|.|..|.|.|+.-
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 34589999999999999999999999999999988875 47999999999999999999999999999999999875
Q ss_pred cCC
Q 019152 132 SGQ 134 (345)
Q Consensus 132 ~~~ 134 (345)
+.+
T Consensus 152 ~gp 154 (170)
T KOG0130|consen 152 KGP 154 (170)
T ss_pred cCC
Confidence 553
No 111
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.26 E-value=6.2e-11 Score=80.34 Aligned_cols=74 Identities=39% Similarity=0.773 Sum_probs=67.7
Q ss_pred eEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 019152 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (345)
Q Consensus 143 ~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~ 217 (345)
+|+|+|||..+++++|+++|..+|.|..+.+..++.+ .++++|||+|.+.++|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999877443 6789999999999999999999999999999998864
No 112
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=2.5e-11 Score=87.57 Aligned_cols=85 Identities=24% Similarity=0.457 Sum_probs=79.2
Q ss_pred CCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 019152 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (345)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~ 217 (345)
......|||+++...+++++|.+.|..||.|+.+.+-.|+.+|-.+||++|+|.+.+.|.+|+..+|+..+-|..|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 34457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 019152 218 ATKGA 222 (345)
Q Consensus 218 ~~~~~ 222 (345)
...+.
T Consensus 149 ~Fv~g 153 (170)
T KOG0130|consen 149 CFVKG 153 (170)
T ss_pred EEecC
Confidence 76543
No 113
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=4.5e-12 Score=117.45 Aligned_cols=144 Identities=15% Similarity=0.240 Sum_probs=118.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccCCceEEEEe----ecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccc
Q 019152 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLI----RKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (345)
Q Consensus 56 ~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~----~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (345)
..++||+||++.+.+.+|...|..+|.+..+.+. .++-+|+||++|..+++|.+|+....+..+ |
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~-g---------- 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFF-G---------- 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhh-h----------
Confidence 4568999999999999999999999987766554 234479999999999999999965544443 3
Q ss_pred cCCCCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 019152 132 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR 211 (345)
Q Consensus 132 ~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~ 211 (345)
...++|.|.|+..|.++++.+++.+|.+.+++++.. ..|+++|.++|.|.++.++.++........+.-+
T Consensus 736 ---------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~ 805 (881)
T KOG0128|consen 736 ---------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVDVAGKREN 805 (881)
T ss_pred ---------hhhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccchhhhhhhc
Confidence 136899999999999999999999999999987765 6789999999999999999999877776666666
Q ss_pred eEEEEeccC
Q 019152 212 QIRCNWATK 220 (345)
Q Consensus 212 ~i~v~~~~~ 220 (345)
.+.|..+.+
T Consensus 806 ~~~v~vsnp 814 (881)
T KOG0128|consen 806 NGEVQVSNP 814 (881)
T ss_pred CccccccCC
Confidence 666665444
No 114
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=1.4e-12 Score=98.92 Aligned_cols=78 Identities=31% Similarity=0.544 Sum_probs=71.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 54 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
.++.-|||+|||+.+||.||.-.|++||.|..|.+++|+. +||||+.|.+..+...|+..|||..|.|+.|+|-..
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 3456799999999999999999999999999999999875 589999999999999999999999999999999765
Q ss_pred cc
Q 019152 130 YA 131 (345)
Q Consensus 130 ~~ 131 (345)
..
T Consensus 113 ~~ 114 (219)
T KOG0126|consen 113 SN 114 (219)
T ss_pred cc
Confidence 43
No 115
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.21 E-value=8.5e-10 Score=100.25 Aligned_cols=71 Identities=17% Similarity=0.195 Sum_probs=61.9
Q ss_pred ceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC-----cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEee
Q 019152 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDA 337 (345)
Q Consensus 263 ~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~-----~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~ 337 (345)
+.|-+.|+|++++-+||.++|..|- ..--+|.+.++ .|.+.|.|++.++|.+|...|+++ .|.+|+++|..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~-~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~---~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYE-PDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQ---KIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccc-cCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccC---cccceeEEEEe
Confidence 5899999999999999999999995 34455666543 789999999999999999999999 99999999864
No 116
>smart00361 RRM_1 RNA recognition motif.
Probab=99.19 E-value=1.1e-10 Score=78.28 Aligned_cols=61 Identities=25% Similarity=0.479 Sum_probs=54.1
Q ss_pred HHHHHHHhc----cCCCcceeE-eeecCCC--CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 019152 155 DATLFACFS----VYPSCSDAR-VMWDQKT--GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (345)
Q Consensus 155 ~~~l~~~f~----~~g~v~~~~-~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v 215 (345)
+++|+++|+ .||.|.++. +..++.+ +.++|++||+|.+.++|.+|+..|+|..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567788887 999999995 6666556 889999999999999999999999999999999876
No 117
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.19 E-value=4.6e-11 Score=109.68 Aligned_cols=75 Identities=24% Similarity=0.369 Sum_probs=71.9
Q ss_pred CcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeeccc
Q 019152 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCG 340 (345)
Q Consensus 261 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~ 340 (345)
-++||||+.|+.++++.||.++|+.|| +|.+|.+..+++||||.+.+..+|.+|+.+|++. .+.++.|+|.||-+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefG--eiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~---kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFG--EIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNV---KVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcc--cceeEeeccCCceeEEEEeehhHHHHHHHHHhcc---cccceeeEEeeecc
Confidence 458999999999999999999999999 8999999999999999999999999999999998 99999999999865
No 118
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.16 E-value=1.1e-10 Score=93.51 Aligned_cols=161 Identities=29% Similarity=0.458 Sum_probs=125.4
Q ss_pred EEEeCCCCCCCHHH---HHHHHhccCCceEEEEeecC---CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecccc
Q 019152 59 VYVGNIHTQVTEPL---LQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (345)
Q Consensus 59 l~v~~lp~~~t~~~---l~~~f~~~G~v~~v~~~~~~---~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (345)
.+++++-.++..+- +...|+.|-.+...++++++ .++.+|+.|.....-.++-..-+++.+....+++......
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtsw 178 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSW 178 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccccc
Confidence 45555555554433 36777777766666666654 3589999998887777776656677777676776544332
Q ss_pred CC---CCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 019152 133 GQ---REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (345)
Q Consensus 133 ~~---~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~ 209 (345)
.. .+-..++..||-+.|..+++.+-|-..|.+|......++++++.+|+++||+||.|.+..++.+|++.|+|++++
T Consensus 179 edPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVg 258 (290)
T KOG0226|consen 179 EDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVG 258 (290)
T ss_pred CCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccc
Confidence 21 223455679999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CeeEEEEecc
Q 019152 210 SRQIRCNWAT 219 (345)
Q Consensus 210 ~~~i~v~~~~ 219 (345)
.+.|.+.-+.
T Consensus 259 srpiklRkS~ 268 (290)
T KOG0226|consen 259 SRPIKLRKSE 268 (290)
T ss_pred cchhHhhhhh
Confidence 9999886543
No 119
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.15 E-value=8.7e-11 Score=104.76 Aligned_cols=77 Identities=35% Similarity=0.591 Sum_probs=72.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecccc
Q 019152 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (345)
Q Consensus 57 ~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (345)
+.|||+|+|+++++++|.++|+..|.|.+++++.|+. +||||++|.+.++|..|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 7899999999999999999999999999999999874 589999999999999999999999999999999998654
Q ss_pred C
Q 019152 133 G 133 (345)
Q Consensus 133 ~ 133 (345)
.
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 4
No 120
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=1.5e-10 Score=96.90 Aligned_cols=81 Identities=27% Similarity=0.418 Sum_probs=71.8
Q ss_pred CCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEE
Q 019152 256 PENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKH 335 (345)
Q Consensus 256 ~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v 335 (345)
+.....-++|||++|...+++.+|++.|.+|| +|+++.+...++||||+|.+.++|..|..+.-+. ..|.|.+|+|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyG--eirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~--lvI~G~Rl~i 297 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYG--EIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNK--LVINGFRLKI 297 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcC--CeeeEEeecccccceeeehhhHHHHHHHHhhcce--eeecceEEEE
Confidence 33444558999999999999999999999999 8999999999999999999999999998766553 3799999999
Q ss_pred eeccc
Q 019152 336 DAMCG 340 (345)
Q Consensus 336 ~~~~~ 340 (345)
.|++.
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99987
No 121
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.09 E-value=2.5e-10 Score=104.91 Aligned_cols=106 Identities=25% Similarity=0.359 Sum_probs=84.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccccCCC
Q 019152 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQR 135 (345)
Q Consensus 56 ~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 135 (345)
++||||++|+..++|.||..+|+.||.|.+|.++..+ +||||.+....+|.+|+.+|++..+.++.|+|.|+..++.+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R--~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR--GCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPK 498 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC--ceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcc
Confidence 7899999999999999999999999999999887655 69999999999999999999999999999999999887765
Q ss_pred CCC--CCceeEEECCCCccCCHHHHHHHhc
Q 019152 136 EDT--SGHFNIFVGDLSPEVTDATLFACFS 163 (345)
Q Consensus 136 ~~~--~~~~~l~v~~lp~~~~~~~l~~~f~ 163 (345)
.+- .-+..+=|+-||..--..++..+++
T Consensus 499 se~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 499 SEYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred hhhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 421 1112233445565544444666654
No 122
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.4e-10 Score=95.85 Aligned_cols=83 Identities=25% Similarity=0.433 Sum_probs=78.7
Q ss_pred CCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 019152 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (345)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~ 217 (345)
.++.+.|||..|.+-++.++|.-+|+.||.|.++.+++|.++|.+..||||+|.+.+++++|.-.|++..|.+++|.|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 35668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 019152 218 ATK 220 (345)
Q Consensus 218 ~~~ 220 (345)
+..
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 754
No 123
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=5.6e-11 Score=93.11 Aligned_cols=146 Identities=24% Similarity=0.357 Sum_probs=120.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC--CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecc
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK--SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~--~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (345)
+...+||||.|+-..++|+-|.++|-.-|+|..|.|..++. ..||||.|.++.+..-|+.-+||..+.+.++.+.+-.
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 34468999999999999999999999999999998877553 4599999999999999999999999999999887543
Q ss_pred ccCCCCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 019152 131 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210 (345)
Q Consensus 131 ~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~ 210 (345)
.... .-|...++++.+.+.|+..|.+..+++..+ .+|.++.++|+.+....+.-.+++...+....-
T Consensus 86 G~sh------------apld~r~~~ei~~~v~s~a~p~~~~R~~~~-~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~ 152 (267)
T KOG4454|consen 86 GNSH------------APLDERVTEEILYEVFSQAGPIEGVRIPTD-NDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQ 152 (267)
T ss_pred CCCc------------chhhhhcchhhheeeecccCCCCCcccccc-ccCCccCccchhhhhhhcCcHHhhhhcccCcCC
Confidence 2211 125667889999999999999999999887 458889999999988888888887666654443
Q ss_pred e
Q 019152 211 R 211 (345)
Q Consensus 211 ~ 211 (345)
+
T Consensus 153 ~ 153 (267)
T KOG4454|consen 153 K 153 (267)
T ss_pred C
Confidence 3
No 124
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=1.5e-11 Score=114.09 Aligned_cols=224 Identities=20% Similarity=0.217 Sum_probs=171.8
Q ss_pred cceEEEeCCCCCCCHH-HHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecc
Q 019152 56 CRSVYVGNIHTQVTEP-LLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (345)
Q Consensus 56 ~~~l~v~~lp~~~t~~-~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (345)
.+..++.++.+..... ..+..|+.+|.|+.|.+...+ ...++++.+....++..|. ...+..+.++...+..+.
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat-~pa~~~~a~~~~av~~ad 649 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESAT-VPAGGALANRSAAVGLAD 649 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcc-cccccccCCccccCCCCC
Confidence 3446677776665554 678999999999998886632 2248899999999998886 457778888888887776
Q ss_pred ccCCCCCC-------CCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 019152 131 ASGQREDT-------SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203 (345)
Q Consensus 131 ~~~~~~~~-------~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l 203 (345)
+....... ....++|++||+..+.+.+|...|..+|.+..+.+......++.+|+||+.|...+.+.+|+...
T Consensus 650 ~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~ 729 (881)
T KOG0128|consen 650 AEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFR 729 (881)
T ss_pred chhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhh
Confidence 55432221 12256899999999999999999999998877766644467889999999999999999999854
Q ss_pred CCceeCCeeEEEEeccCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHh
Q 019152 204 TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHF 283 (345)
Q Consensus 204 ~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f 283 (345)
.+..++ + ..++|.|.|+..|.++++.++
T Consensus 730 d~~~~g-K---------------------------------------------------~~v~i~g~pf~gt~e~~k~l~ 757 (881)
T KOG0128|consen 730 DSCFFG-K---------------------------------------------------ISVAISGPPFQGTKEELKSLA 757 (881)
T ss_pred hhhhhh-h---------------------------------------------------hhhheeCCCCCCchHHHHhhc
Confidence 444333 0 359999999999999999999
Q ss_pred hhcCceeeEEEeee-----CCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEee
Q 019152 284 HSLGAGVIEEVRVQ-----RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDA 337 (345)
Q Consensus 284 ~~~G~~~i~~v~i~-----~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~ 337 (345)
.++| .+.++++. +++|.|+|.|.+..+|.+++..++.. .+..+.+.|..
T Consensus 758 ~~~g--n~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~---~~rE~~~~v~v 811 (881)
T KOG0128|consen 758 SKTG--NVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVA---GKRENNGEVQV 811 (881)
T ss_pred cccC--CccccchhhhhccccccceeccCCCcchhhhhcccchhh---hhhhcCccccc
Confidence 9999 56665543 34899999999999999998777766 55555554443
No 125
>smart00361 RRM_1 RNA recognition motif.
Probab=99.02 E-value=1.1e-09 Score=73.32 Aligned_cols=57 Identities=28% Similarity=0.371 Sum_probs=49.3
Q ss_pred HHHHHHHHh----ccCCceEEE-Eeec------CCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEE
Q 019152 70 EPLLQEVFS----STGPVEGCK-LIRK------DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (345)
Q Consensus 70 ~~~l~~~f~----~~G~v~~v~-~~~~------~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (345)
+++|+++|+ .||.|.++. ++.+ .++|+|||.|.+.++|.+|+..|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999985 4433 24689999999999999999999999999999876
No 126
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.99 E-value=2.2e-09 Score=90.01 Aligned_cols=78 Identities=18% Similarity=0.458 Sum_probs=70.1
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHH-hCCCccCCCceEEeecc
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILS-LNGRHLFGQPIKVNWAY 130 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~-l~~~~~~g~~l~v~~~~ 130 (345)
......+|||+||-..++|.+|++.|.+||+|+++.++..+. +|||+|.+.++|+.|... ++...|.|++|+|.|..
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~--CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKG--CAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccc--cceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 456678899999999999999999999999999999987664 999999999999999865 56778899999999998
Q ss_pred c
Q 019152 131 A 131 (345)
Q Consensus 131 ~ 131 (345)
+
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 7
No 127
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.2e-09 Score=91.80 Aligned_cols=86 Identities=22% Similarity=0.429 Sum_probs=76.8
Q ss_pred CCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCC----eEEEEEeCHHHHHHHHHHhCCCccCC
Q 019152 46 NLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS----YGFIHYFDRRSAAMAILSLNGRHLFG 121 (345)
Q Consensus 46 ~~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~----~afv~f~~~~~A~~a~~~l~~~~~~g 121 (345)
.+|......+...|||..|.+-++.++|.-+|+.||.|.++.++++..+| ||||+|.+.+++.+|.-.+++..|..
T Consensus 229 DlpdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDD 308 (479)
T KOG0415|consen 229 DLPDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDD 308 (479)
T ss_pred CCcccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeecc
Confidence 34444445566889999999999999999999999999999999998875 99999999999999999999999999
Q ss_pred CceEEeeccc
Q 019152 122 QPIKVNWAYA 131 (345)
Q Consensus 122 ~~l~v~~~~~ 131 (345)
+.|.|-|+..
T Consensus 309 rRIHVDFSQS 318 (479)
T KOG0415|consen 309 RRIHVDFSQS 318 (479)
T ss_pred ceEEeehhhh
Confidence 9999988753
No 128
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=3.8e-10 Score=105.43 Aligned_cols=160 Identities=19% Similarity=0.350 Sum_probs=135.9
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC---CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
+...++||+++||+..+++.+|+..|..+|.|.+|.|-... ...||||.|.+...+-.|...+.+..|....+++.+
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 56778999999999999999999999999999999885542 235999999999999999999999888877777776
Q ss_pred ccccCCCCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 019152 129 AYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 208 (345)
Q Consensus 129 ~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~ 208 (345)
..+ .....+.+++++|+..+....+...|..||.|..|.+- +...|+|+.|.+...+..|+..+.+..+
T Consensus 448 G~~-----kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~------hgq~yayi~yes~~~aq~a~~~~rgap~ 516 (975)
T KOG0112|consen 448 GQP-----KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR------HGQPYAYIQYESPPAAQAATHDMRGAPL 516 (975)
T ss_pred ccc-----ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc------cCCcceeeecccCccchhhHHHHhcCcC
Confidence 644 23456789999999999999999999999999987655 2345899999999999999999999998
Q ss_pred CC--eeEEEEeccCCC
Q 019152 209 GS--RQIRCNWATKGA 222 (345)
Q Consensus 209 ~~--~~i~v~~~~~~~ 222 (345)
++ +.++|.|+....
T Consensus 517 G~P~~r~rvdla~~~~ 532 (975)
T KOG0112|consen 517 GGPPRRLRVDLASPPG 532 (975)
T ss_pred CCCCcccccccccCCC
Confidence 64 678888875543
No 129
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.98 E-value=1.5e-09 Score=84.70 Aligned_cols=81 Identities=17% Similarity=0.384 Sum_probs=75.5
Q ss_pred ceeEEECCCCccCCHHHHHHHhccC-CCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 019152 141 HFNIFVGDLSPEVTDATLFACFSVY-PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (345)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~~~-g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 219 (345)
...+++..+|..+.+.++..+|..| |.|..+++-|++.||+++|||||+|.+++.|.-|-..||+..+.++-+.|++-.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 3579999999999999999999998 778888888999999999999999999999999999999999999999999976
Q ss_pred CC
Q 019152 220 KG 221 (345)
Q Consensus 220 ~~ 221 (345)
+.
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 65
No 130
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.91 E-value=9.2e-10 Score=102.93 Aligned_cols=160 Identities=18% Similarity=0.299 Sum_probs=134.3
Q ss_pred CCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 019152 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (345)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 218 (345)
..+.+||++||+..+++.+|+..|..+|.|..|.|...+ -+....|+||.|.+...+-.|...+.+..|....+++.+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 345789999999999999999999999999999887652 3444568999999999999999989988887665555544
Q ss_pred cCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeC
Q 019152 219 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR 298 (345)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~ 298 (345)
..+ ....+.+++++++.-+....|..+|..|| .|..|.+..
T Consensus 449 ~~k-------------------------------------st~ttr~~sgglg~w~p~~~l~r~fd~fG--pir~Idy~h 489 (975)
T KOG0112|consen 449 QPK-------------------------------------STPTTRLQSGGLGPWSPVSRLNREFDRFG--PIRIIDYRH 489 (975)
T ss_pred ccc-------------------------------------cccceeeccCCCCCCChHHHHHHHhhccC--cceeeeccc
Confidence 321 11226799999999999999999999999 688888888
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCCCccccCC--ceEEEeecccc
Q 019152 299 DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFG--KQMKHDAMCGT 341 (345)
Q Consensus 299 ~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g--~~l~v~~~~~~ 341 (345)
...+|+|.|++...|..|+..|.|. -|+| +++.|.|+...
T Consensus 490 gq~yayi~yes~~~aq~a~~~~rga---p~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 490 GQPYAYIQYESPPAAQAATHDMRGA---PLGGPPRRLRVDLASPP 531 (975)
T ss_pred CCcceeeecccCccchhhHHHHhcC---cCCCCCcccccccccCC
Confidence 8899999999999999999999999 6765 78999998754
No 131
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.83 E-value=1.3e-08 Score=92.92 Aligned_cols=78 Identities=26% Similarity=0.544 Sum_probs=71.0
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC-------CCeEEEEEeCHHHHHHHHHHhCCCccCCCceE
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-------SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIK 125 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~-------~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~ 125 (345)
....++|||+||++.++++.|...|..||+|.+++++..++ +.|+||.|.+..+|.+|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 34456799999999999999999999999999999987543 57999999999999999999999999999999
Q ss_pred Eeecc
Q 019152 126 VNWAY 130 (345)
Q Consensus 126 v~~~~ 130 (345)
+.|+.
T Consensus 251 ~gWgk 255 (877)
T KOG0151|consen 251 LGWGK 255 (877)
T ss_pred ecccc
Confidence 99984
No 132
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.78 E-value=1.1e-08 Score=91.29 Aligned_cols=178 Identities=17% Similarity=0.188 Sum_probs=111.5
Q ss_pred CCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 019152 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (345)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~ 217 (345)
.-+..+|+|.|||.++++++|.++|+.||+|..++.- ...++.+||+|-|.++|++|+++|++..+.|+.|....
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~ 146 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPG 146 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCC
Confidence 4456799999999999999999999999999996543 35577899999999999999999999999999888221
Q ss_pred ccCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeee
Q 019152 218 ATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ 297 (345)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~ 297 (345)
...... ..... ..+-.... .......+...+. -.+++ .|++..+..-+...+.-+| .+..-...
T Consensus 147 ~~~~~~----~~~~~----~~~~~~~~----~p~a~s~pgg~~~-~~~~g-~l~P~~s~~~~~~~~~~~~--~~~~~~~~ 210 (549)
T KOG4660|consen 147 GARRAM----GLQSG----TSFLNHFG----SPLANSPPGGWPR-GQLFG-MLSPTRSSILLEHISSVDG--SSPGRETP 210 (549)
T ss_pred cccccc----hhccc----chhhhhcc----chhhcCCCCCCcC-Cccee-eeccchhhhhhhcchhccC--cccccccc
Confidence 111110 00000 00000000 0001111111111 22333 2888777766666777777 33332222
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeeccc
Q 019152 298 RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCG 340 (345)
Q Consensus 298 ~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~ 340 (345)
.-+..-+++|.+..++..+...+ |. .+.|....+.++..
T Consensus 211 ~~~hq~~~~~~~~~s~a~~~~~~-G~---~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 211 LLNHQRFVEFADNRSYAFSEPRG-GF---LISNSSGVITFSGP 249 (549)
T ss_pred chhhhhhhhhccccchhhcccCC-ce---ecCCCCceEEecCC
Confidence 22346788888888886666544 55 67777766666543
No 133
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.73 E-value=5.1e-08 Score=87.03 Aligned_cols=80 Identities=25% Similarity=0.411 Sum_probs=71.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
..-.++|||++|...+.-.+|+++|++||.|...+++.+.. +.|+||++.+.++|.+||..|+.+.|+|+.|.|..
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 34467899999999999999999999999999999988643 46999999999999999999999999999999998
Q ss_pred cccc
Q 019152 129 AYAS 132 (345)
Q Consensus 129 ~~~~ 132 (345)
++..
T Consensus 482 aKNE 485 (940)
T KOG4661|consen 482 AKNE 485 (940)
T ss_pred cccC
Confidence 8653
No 134
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.71 E-value=5.6e-08 Score=86.79 Aligned_cols=82 Identities=26% Similarity=0.338 Sum_probs=75.7
Q ss_pred CceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 019152 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (345)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 219 (345)
..++|||.+|...+...+|+.+|++||.|...+++.+..+.-.+.|+||++.+.++|.+||..|+...+.|+.|.|+.++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 34789999999999999999999999999999999887777788999999999999999999999999999999999876
Q ss_pred CC
Q 019152 220 KG 221 (345)
Q Consensus 220 ~~ 221 (345)
..
T Consensus 484 NE 485 (940)
T KOG4661|consen 484 NE 485 (940)
T ss_pred cC
Confidence 54
No 135
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.69 E-value=2.3e-08 Score=85.34 Aligned_cols=167 Identities=19% Similarity=0.251 Sum_probs=128.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEee----cCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecc
Q 019152 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIR----KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (345)
Q Consensus 55 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~----~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (345)
..++.+++++...+.+.+...++..+|......+.. ....|++++.|...+.+..|+.......+.++.+..-...
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 467799999999999999999999999655444433 2356899999999999999986533334444333322221
Q ss_pred c-------cCCCCCCCCceeEE-ECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 019152 131 A-------SGQREDTSGHFNIF-VGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202 (345)
Q Consensus 131 ~-------~~~~~~~~~~~~l~-v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 202 (345)
. +..+.......++| +++++..+++++|+..|..+|.|..+++..++.++..++++|+.|.....+..++..
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc
Confidence 1 11122223334455 999999999999999999999999999999989999999999999999999999987
Q ss_pred hCCceeCCeeEEEEeccCCC
Q 019152 203 LTGKWLGSRQIRCNWATKGA 222 (345)
Q Consensus 203 l~~~~~~~~~i~v~~~~~~~ 222 (345)
....++++++.+.+.....
T Consensus 247 -~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 247 -QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred -ccCcccCcccccccCCCCc
Confidence 7888999999998876653
No 136
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.65 E-value=5.6e-09 Score=82.04 Aligned_cols=136 Identities=21% Similarity=0.252 Sum_probs=104.2
Q ss_pred CceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 019152 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (345)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 219 (345)
..++|||+|+-..++++-|.++|-..|+|..+.|..+ .+++.+ ||||.|.++-...-|+..++|..+.+..+.+.+-.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~-~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSG-QDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCC-ccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 3579999999999999999999999999999988866 456666 99999999999999999999999998888876432
Q ss_pred CCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeC-
Q 019152 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR- 298 (345)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~- 298 (345)
...-. -|...++++-+...|+..| .+..+++..
T Consensus 86 G~sha--------------------------------------------pld~r~~~ei~~~v~s~a~--p~~~~R~~~~ 119 (267)
T KOG4454|consen 86 GNSHA--------------------------------------------PLDERVTEEILYEVFSQAG--PIEGVRIPTD 119 (267)
T ss_pred CCCcc--------------------------------------------hhhhhcchhhheeeecccC--CCCCcccccc
Confidence 21000 1556677888888888887 577777764
Q ss_pred ----CcceEEEEeCCHHHHHHHHHhhCCC
Q 019152 299 ----DKGFGFVRYSTHAEAALAIQMGNTT 323 (345)
Q Consensus 299 ----~~~~afV~f~~~~~A~~Al~~l~~~ 323 (345)
++.++|+.+-..-+.-.++....+.
T Consensus 120 ~d~rnrn~~~~~~qr~~~~P~~~~~y~~l 148 (267)
T KOG4454|consen 120 NDGRNRNFGFVTYQRLCAVPFALDLYQGL 148 (267)
T ss_pred ccCCccCccchhhhhhhcCcHHhhhhccc
Confidence 3677888776655555555544433
No 137
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.64 E-value=2.5e-07 Score=61.62 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=49.5
Q ss_pred ceEEEcCCCcccCHHH----HHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeec
Q 019152 263 TTVYVGNLAPEVTQLD----LHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAM 338 (345)
Q Consensus 263 ~~l~V~nlp~~~t~~~----L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~ 338 (345)
..|+|.|||.+..... |+.++..+|+ .+..|. .+.|+|.|.+.+.|.+|.+.|+|. .+.|++|.|+|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGG-kVl~v~----~~tAilrF~~~~~A~RA~KRmegE---dVfG~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGG-KVLSVS----GGTAILRFPNQEFAERAQKRMEGE---DVFGNKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT---EEE------TT-EEEEESSHHHHHHHHHHHTT-----SSSS--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCC-EEEEEe----CCEEEEEeCCHHHHHHHHHhhccc---ccccceEEEEEc
Confidence 4699999999877654 5677889994 776663 589999999999999999999999 899999999998
Q ss_pred cc
Q 019152 339 CG 340 (345)
Q Consensus 339 ~~ 340 (345)
+.
T Consensus 75 ~~ 76 (90)
T PF11608_consen 75 PK 76 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 138
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.64 E-value=4.2e-08 Score=83.80 Aligned_cols=172 Identities=24% Similarity=0.276 Sum_probs=125.7
Q ss_pred CceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 019152 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (345)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 219 (345)
...++|++++...+.+.+...++..+|.+....+........+++++++.|...+.+..++.........++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 35689999999999888888889889887776666555677899999999999999999998543344555444433322
Q ss_pred CCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC
Q 019152 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 299 (345)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~ 299 (345)
........ ........+..+..+|++++.++++++|+..|..+| .|..++++..
T Consensus 167 ~~~~~~~n------------------------~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~--~i~~~r~~~~ 220 (285)
T KOG4210|consen 167 RRGLRPKN------------------------KLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSG--EITSVRLPTD 220 (285)
T ss_pred cccccccc------------------------hhcccccCccccceeecccccccchHHHhhhccCcC--cceeeccCCC
Confidence 22100000 000001111223445999999999999999999998 8888888754
Q ss_pred ------cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeecccc
Q 019152 300 ------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCGT 341 (345)
Q Consensus 300 ------~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~~ 341 (345)
+++|+|.|.+...+..++.. .+. .++++++.+.+.+..
T Consensus 221 ~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 221 EESGDSKGFAYVDFSAGNSKKLALND-QTR---SIGGRPLRLEEDEPR 264 (285)
T ss_pred CCccchhhhhhhhhhhchhHHHHhhc-ccC---cccCcccccccCCCC
Confidence 78999999999999999976 677 899999999987654
No 139
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.61 E-value=3.7e-07 Score=64.09 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=67.9
Q ss_pred eeEEECCCCccCCHHHHHHHhccC--CCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC----CeeEEE
Q 019152 142 FNIFVGDLSPEVTDATLFACFSVY--PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG----SRQIRC 215 (345)
Q Consensus 142 ~~l~v~~lp~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~----~~~i~v 215 (345)
++|+|.|||...+.++|.+++... |...-+.++.|..++.+.|||||.|.+.+.|.+..+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999998653 66777888888888999999999999999999999999998774 566677
Q ss_pred EeccC
Q 019152 216 NWATK 220 (345)
Q Consensus 216 ~~~~~ 220 (345)
.||..
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77654
No 140
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.61 E-value=7.2e-08 Score=77.72 Aligned_cols=161 Identities=25% Similarity=0.341 Sum_probs=110.0
Q ss_pred eEEECCCCccCCHHH-H--HHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 019152 143 NIFVGDLSPEVTDAT-L--FACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (345)
Q Consensus 143 ~l~v~~lp~~~~~~~-l--~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 219 (345)
..+++++-..+..+- + ...|+.+..+....++++ ..+..++++|+.|.......++-..-+++.++...+++.-..
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~-~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gt 176 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRD-RPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGT 176 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhc-CCCccCcccccCcchhhhhhhhccccccccccCcceeecccc
Confidence 445555554444433 2 566777777777777766 346778899999998888777776666677766665543221
Q ss_pred CCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcC----ceeeEEEe
Q 019152 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG----AGVIEEVR 295 (345)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G----~~~i~~v~ 295 (345)
.-...... .-......||-+.|...++++-|-..|.+|- ...|.+-+
T Consensus 177 swedPsl~-----------------------------ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkR 227 (290)
T KOG0226|consen 177 SWEDPSLA-----------------------------EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKR 227 (290)
T ss_pred ccCCcccc-----------------------------cCccccceeecccccccccHHHHHHHHHhccchhhcccccccc
Confidence 11100000 0001115699999999999999999999875 22333334
Q ss_pred eeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEe
Q 019152 296 VQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHD 336 (345)
Q Consensus 296 i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~ 336 (345)
-.+.+|++||.|.+..++.+|+..|+|+ +++.|.|++.
T Consensus 228 TgKSkgygfVSf~~pad~~rAmrem~gk---yVgsrpiklR 265 (290)
T KOG0226|consen 228 TGKSKGYGFVSFRDPADYVRAMREMNGK---YVGSRPIKLR 265 (290)
T ss_pred ccccccceeeeecCHHHHHHHHHhhccc---ccccchhHhh
Confidence 4455899999999999999999999999 9999999874
No 141
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.60 E-value=2e-07 Score=73.07 Aligned_cols=78 Identities=21% Similarity=0.290 Sum_probs=68.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcc-CCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 55 TCRSVYVGNIHTQVTEPLLQEVFSST-GPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 55 ~~~~l~v~~lp~~~t~~~l~~~f~~~-G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
....++|..+|..+.+.++..+|.++ |.|..+.+-+++ ++|||||+|.+++.|.-|-+.+|+..+.|+.|.+.+-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 34458999999999999999999998 688888886655 3589999999999999999999999999999999877
Q ss_pred ccc
Q 019152 130 YAS 132 (345)
Q Consensus 130 ~~~ 132 (345)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 554
No 142
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.57 E-value=2.2e-07 Score=85.18 Aligned_cols=78 Identities=29% Similarity=0.441 Sum_probs=70.0
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeC---------CcceEEEEeCCHHHHHHHHHhhCCCCccccC
Q 019152 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR---------DKGFGFVRYSTHAEAALAIQMGNTTQSSYLF 329 (345)
Q Consensus 259 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~---------~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~ 329 (345)
.|..+.|||+||++.++++.|...|..|| .+..++|+- ++.|+||.|.+..+|.+|++.|+|. .+.
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfg--PlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~---iv~ 245 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFG--PLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGI---IVM 245 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccC--cccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcce---eee
Confidence 34557899999999999999999999999 688888762 3789999999999999999999999 999
Q ss_pred CceEEEeecccc
Q 019152 330 GKQMKHDAMCGT 341 (345)
Q Consensus 330 g~~l~v~~~~~~ 341 (345)
+..+++.|+|.-
T Consensus 246 ~~e~K~gWgk~V 257 (877)
T KOG0151|consen 246 EYEMKLGWGKAV 257 (877)
T ss_pred eeeeeecccccc
Confidence 999999999753
No 143
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.57 E-value=2.7e-07 Score=75.91 Aligned_cols=82 Identities=27% Similarity=0.375 Sum_probs=74.5
Q ss_pred CceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 019152 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (345)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 219 (345)
....|+|.|||..+++++|+++|..||.+..+.+.++ ..|.+.|.|-|.|...++|.+|++.+++..++|+.+.+....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 3468999999999999999999999999999888888 578999999999999999999999999999999999998765
Q ss_pred CCC
Q 019152 220 KGA 222 (345)
Q Consensus 220 ~~~ 222 (345)
...
T Consensus 161 ~~~ 163 (243)
T KOG0533|consen 161 SPS 163 (243)
T ss_pred Ccc
Confidence 543
No 144
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.56 E-value=3.6e-07 Score=75.23 Aligned_cols=80 Identities=21% Similarity=0.289 Sum_probs=70.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC---CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~---~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
...+.+|+|.|||+.++++||+++|..||.+..+.+-.++. .|.|-|.|...++|..|++.++|..+.|+.+++...
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 34456799999999999999999999999888888877764 489999999999999999999999999999888866
Q ss_pred ccc
Q 019152 130 YAS 132 (345)
Q Consensus 130 ~~~ 132 (345)
...
T Consensus 160 ~~~ 162 (243)
T KOG0533|consen 160 SSP 162 (243)
T ss_pred cCc
Confidence 543
No 145
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.55 E-value=6e-07 Score=63.05 Aligned_cols=77 Identities=18% Similarity=0.120 Sum_probs=59.9
Q ss_pred ceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeC------CcceEEEEeCCHHHHHHHHHhhCCCCccccC-CceEEE
Q 019152 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR------DKGFGFVRYSTHAEAALAIQMGNTTQSSYLF-GKQMKH 335 (345)
Q Consensus 263 ~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~------~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~-g~~l~v 335 (345)
+||.|+|||...|.++|.+++..........+-++- +.|+|||.|.+++.|.+-.+.++|+.|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999888754322333333332 2799999999999999999999999665454 566788
Q ss_pred eecc
Q 019152 336 DAMC 339 (345)
Q Consensus 336 ~~~~ 339 (345)
.||+
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 8875
No 146
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.53 E-value=7.7e-07 Score=59.30 Aligned_cols=71 Identities=18% Similarity=0.331 Sum_probs=48.0
Q ss_pred ceEEEeCCCCCCCHHHHH----HHHhccC-CceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccc
Q 019152 57 RSVYVGNIHTQVTEPLLQ----EVFSSTG-PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (345)
Q Consensus 57 ~~l~v~~lp~~~t~~~l~----~~f~~~G-~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (345)
..|+|.|||.+.+...|+ .++..+| .|.+|. .+.|.|.|.+.+.|.+|.+.++|..+.|+.|.|.+...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 458999999998876654 5556787 565542 35799999999999999999999999999999998854
Q ss_pred cC
Q 019152 132 SG 133 (345)
Q Consensus 132 ~~ 133 (345)
..
T Consensus 77 ~r 78 (90)
T PF11608_consen 77 NR 78 (90)
T ss_dssp S-
T ss_pred cc
Confidence 43
No 147
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.52 E-value=2.4e-07 Score=82.56 Aligned_cols=75 Identities=20% Similarity=0.359 Sum_probs=63.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeec----CCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecc
Q 019152 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (345)
Q Consensus 55 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~----~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (345)
...+|||+|||.++++++|.++|+.||+|....|... +...||||+|.+.+++..|+.+ +-..+.+++|.|+--.
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 3445999999999999999999999999988776553 2337999999999999999976 5788889999987543
No 148
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.45 E-value=1.1e-07 Score=81.15 Aligned_cols=147 Identities=17% Similarity=0.127 Sum_probs=114.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC-------CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-------SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 57 ~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~-------~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
..|.|.||.+.+|.+.++.+|...|.|..+.++..-. ...|||.|.+...+..|- .|.++++-++.|.|.++
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 3799999999999999999999999999999987321 368999999999988884 68888888888888765
Q ss_pred cccCCC--------------------------------CC---------------------CCCceeEEECCCCccCCHH
Q 019152 130 YASGQR--------------------------------ED---------------------TSGHFNIFVGDLSPEVTDA 156 (345)
Q Consensus 130 ~~~~~~--------------------------------~~---------------------~~~~~~l~v~~lp~~~~~~ 156 (345)
.....+ .. ..-.+++++.+|+..+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 432100 00 0012678999999999999
Q ss_pred HHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 019152 157 TLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (345)
Q Consensus 157 ~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~ 209 (345)
++.+.|..+|.|....+- .+....+|.+.|........|+. ++|..+.
T Consensus 167 e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 999999999999776554 33445578899998888888887 4666554
No 149
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.39 E-value=7.7e-07 Score=79.34 Aligned_cols=78 Identities=27% Similarity=0.454 Sum_probs=67.3
Q ss_pred eeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 019152 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (345)
Q Consensus 142 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 220 (345)
..|||.|||.+++.++|.++|..||.|+...|......++..+||||+|.+.+++..|+.+ +...++++++.|+--..
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 4599999999999999999999999999988876543445459999999999999999986 57888999999986544
No 150
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.37 E-value=1.2e-06 Score=63.19 Aligned_cols=72 Identities=19% Similarity=0.319 Sum_probs=47.1
Q ss_pred ceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCC---CccccCCceEEEee
Q 019152 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT---QSSYLFGKQMKHDA 337 (345)
Q Consensus 263 ~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~---~~~~~~g~~l~v~~ 337 (345)
+.|+|.+++..++.++|++.|+.|| .|.+|.+.+....|+|.|.+.+.|.+|+..+... .+ .+.+..++++.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g--~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~-~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFG--EVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKL-KIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS----EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B--TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcC--CcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCce-EEcCceEEEEE
Confidence 5799999999999999999999999 8999999999999999999999999999877533 22 56666666543
No 151
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.37 E-value=5.5e-08 Score=83.76 Aligned_cols=151 Identities=22% Similarity=0.300 Sum_probs=118.1
Q ss_pred eeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc-eeCCeeEEEEeccC
Q 019152 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK-WLGSRQIRCNWATK 220 (345)
Q Consensus 142 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~-~~~~~~i~v~~~~~ 220 (345)
+.+|++||.+.++.+++..+|...-.-..-.++ ...||+||.+.+...|.+|++.++++ .+.|.++.+.++-+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee------eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 368999999999999999999764111111122 12469999999999999999999986 57899999988765
Q ss_pred CCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeee---
Q 019152 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ--- 297 (345)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~--- 297 (345)
+... ++.+-|.|+|....++-|..+...|| .+..+...
T Consensus 76 kkqr-------------------------------------srk~Qirnippql~wevld~Ll~qyg--~ve~~eqvnt~ 116 (584)
T KOG2193|consen 76 KKQR-------------------------------------SRKIQIRNIPPQLQWEVLDSLLAQYG--TVENCEQVNTD 116 (584)
T ss_pred HHHH-------------------------------------hhhhhHhcCCHHHHHHHHHHHHhccC--CHhHhhhhccc
Confidence 4321 15689999999999999999999999 55555432
Q ss_pred CCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeeccc
Q 019152 298 RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCG 340 (345)
Q Consensus 298 ~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~ 340 (345)
...-..-|+|.+.+.+..|+..++|. .+.+..++++|-.+
T Consensus 117 ~etavvnvty~~~~~~~~ai~kl~g~---Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 117 SETAVVNVTYSAQQQHRQAIHKLNGP---QLENQHLKVGYIPD 156 (584)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcch---HhhhhhhhcccCch
Confidence 22333457899999999999999999 89999999999754
No 152
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.29 E-value=1.6e-06 Score=71.73 Aligned_cols=83 Identities=19% Similarity=0.264 Sum_probs=76.0
Q ss_pred CCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 019152 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (345)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~ 217 (345)
..+...+|++|+...++.+++...|+.||.+..+.++.++..+.++||+||+|.+.+.+..++. |++..+.|+.+.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 3445689999999999999999999999999999999998888999999999999999999999 999999999999988
Q ss_pred ccCC
Q 019152 218 ATKG 221 (345)
Q Consensus 218 ~~~~ 221 (345)
....
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 6554
No 153
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.21 E-value=2.4e-06 Score=73.19 Aligned_cols=177 Identities=12% Similarity=0.069 Sum_probs=112.5
Q ss_pred eEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCC---CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 019152 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKT---GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (345)
Q Consensus 143 ~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 219 (345)
.|-|.||.+.++.+.++.+|...|.|..+.++....+ ......|||.|.+...+..|.. |.+..|-++.|.|-...
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEecC
Confidence 7899999999999999999999999999988753221 2345689999999999888875 77777777777765543
Q ss_pred CCCCCCCC----ccCccccc-hhhccCCCCcC------CcCCCCCCCCCCC----------CCcceEEEcCCCcccCHHH
Q 019152 220 KGAGNNED----KQSSDAKS-VVELTNGSSED------GKETTNTEAPENN----------PQYTTVYVGNLAPEVTQLD 278 (345)
Q Consensus 220 ~~~~~~~~----~~~~~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~----------~~~~~l~V~nlp~~~t~~~ 278 (345)
........ ....+..+ .++....-+.. +..+...-.+... .-.++++|.+|+..+...+
T Consensus 88 ~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e 167 (479)
T KOG4676|consen 88 DEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPE 167 (479)
T ss_pred CCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchh
Confidence 32222111 00000000 00000000000 0000000000001 1226899999999999999
Q ss_pred HHHHhhhcCceeeEEEeeeC--CcceEEEEeCCHHHHHHHHHhhCCC
Q 019152 279 LHRHFHSLGAGVIEEVRVQR--DKGFGFVRYSTHAEAALAIQMGNTT 323 (345)
Q Consensus 279 L~~~f~~~G~~~i~~v~i~~--~~~~afV~f~~~~~A~~Al~~l~~~ 323 (345)
+.+.|..+| ++...++-. ...++.++|........|+. ++|.
T Consensus 168 ~~e~f~r~G--ev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gr 211 (479)
T KOG4676|consen 168 SGESFERKG--EVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGR 211 (479)
T ss_pred hhhhhhhcc--hhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcch
Confidence 999999999 666665543 35667799988888888874 5666
No 154
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.13 E-value=3.5e-07 Score=78.95 Aligned_cols=152 Identities=26% Similarity=0.393 Sum_probs=119.3
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCC-ceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCC-ccCCCceEEeeccccCCC
Q 019152 58 SVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGR-HLFGQPIKVNWAYASGQR 135 (345)
Q Consensus 58 ~l~v~~lp~~~t~~~l~~~f~~~G~-v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~-~~~g~~l~v~~~~~~~~~ 135 (345)
.+|++||.+.++.++|..+|...-. ...-.++ ..||+||.+.+..-|.+|++.++|. .+.|+++.+..+.++..+
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~---k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqr 79 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV---KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQR 79 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee---ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHH
Confidence 5899999999999999999975411 1111111 2479999999999999999999985 588999999888765532
Q ss_pred CCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 019152 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (345)
Q Consensus 136 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v 215 (345)
++.+-|.|+|+...++-+..+...||.++.+.... +..-.-..-|+|...+.+..|+..+++..+.+..+.+
T Consensus 80 -----srk~Qirnippql~wevld~Ll~qyg~ve~~eqvn---t~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~ 151 (584)
T KOG2193|consen 80 -----SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVN---TDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKV 151 (584)
T ss_pred -----hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhc---cchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhc
Confidence 34688999999999999999999999999886541 1111223457788999999999999999999888888
Q ss_pred EeccC
Q 019152 216 NWATK 220 (345)
Q Consensus 216 ~~~~~ 220 (345)
.|...
T Consensus 152 ~YiPd 156 (584)
T KOG2193|consen 152 GYIPD 156 (584)
T ss_pred ccCch
Confidence 88543
No 155
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.12 E-value=4.6e-06 Score=68.94 Aligned_cols=78 Identities=21% Similarity=0.326 Sum_probs=69.2
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
..+.+.+||+|+.+.+|.+++...|+.||.|..+.+..++. +||+||+|.+.+.+..++. |+|..|.|+.+.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 44567899999999999999999999999999888877764 5799999999999999997 999999999999887
Q ss_pred ccc
Q 019152 129 AYA 131 (345)
Q Consensus 129 ~~~ 131 (345)
..-
T Consensus 177 ~r~ 179 (231)
T KOG4209|consen 177 KRT 179 (231)
T ss_pred eee
Confidence 643
No 156
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.01 E-value=1.7e-05 Score=57.22 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=38.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhC
Q 019152 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLN 115 (345)
Q Consensus 57 ~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~ 115 (345)
+.|.|.|++..++.++|++.|+.||.|..|.+.+... .|||.|.++++|..|+..+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~--~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT--EGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S--EEEEEESS---HHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC--EEEEEECCcchHHHHHHHHH
Confidence 4689999999999999999999999999888766444 79999999999999998764
No 157
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.99 E-value=8.7e-06 Score=68.50 Aligned_cols=104 Identities=21% Similarity=0.324 Sum_probs=74.8
Q ss_pred eEEEeCCCCCCCHHHH------HHHHhccCCceEEEEeecCC-----CCeE--EEEEeCHHHHHHHHHHhCCCccCCCce
Q 019152 58 SVYVGNIHTQVTEPLL------QEVFSSTGPVEGCKLIRKDK-----SSYG--FIHYFDRRSAAMAILSLNGRHLFGQPI 124 (345)
Q Consensus 58 ~l~v~~lp~~~t~~~l------~~~f~~~G~v~~v~~~~~~~-----~~~a--fv~f~~~~~A~~a~~~l~~~~~~g~~l 124 (345)
-|||-+||+.+..+++ .++|.+||.|..|.+-+..+ .+.+ ||.|.+.++|.+|+...+|..++|+.|
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~l 195 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVL 195 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceE
Confidence 4799999998877663 57999999999887766441 2333 999999999999999999999999999
Q ss_pred EEeeccccC-----CCCCCCCceeEEECCCCc---cCCHHHHHHH
Q 019152 125 KVNWAYASG-----QREDTSGHFNIFVGDLSP---EVTDATLFAC 161 (345)
Q Consensus 125 ~v~~~~~~~-----~~~~~~~~~~l~v~~lp~---~~~~~~l~~~ 161 (345)
+..|...+- ....-.+..++|+-.-.+ ..+.+||...
T Consensus 196 katYGTTKYCtsYLRn~~CpNp~CMyLHEpg~e~Ds~tK~el~n~ 240 (480)
T COG5175 196 KATYGTTKYCTSYLRNAVCPNPDCMYLHEPGPEKDSLTKDELCNS 240 (480)
T ss_pred eeecCchHHHHHHHcCCCCCCCCeeeecCCCcccccccHHHHhhh
Confidence 998875431 111222334777754333 3456666544
No 158
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.87 E-value=4.5e-05 Score=62.07 Aligned_cols=89 Identities=22% Similarity=0.342 Sum_probs=78.0
Q ss_pred HHHHHHHhCCCccCCCceEEeeccccCCCCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEE
Q 019152 107 AAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFG 186 (345)
Q Consensus 107 A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~ 186 (345)
|..|-..|++....|+.++|.|+.. . .|||.||...++.+.+...|+.||+|+...+..| ..+++.+-+
T Consensus 7 ae~ak~eLd~~~~~~~~lr~rfa~~-a---------~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~t~eg 75 (275)
T KOG0115|consen 7 AEIAKRELDGRFPKGRSLRVRFAMH-A---------ELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKPTREG 75 (275)
T ss_pred HHHHHHhcCCCCCCCCceEEEeecc-c---------eEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccccccc
Confidence 5556667899999999999999975 2 6999999999999999999999999998888877 567888899
Q ss_pred EEEeCCHHHHHHHHHHhCCc
Q 019152 187 FVSFRNQQDAQSAINDLTGK 206 (345)
Q Consensus 187 fv~f~~~~~a~~a~~~l~~~ 206 (345)
+|.|...-.|.+|...+.-.
T Consensus 76 ~v~~~~k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 76 IVEFAKKPNARKAARRCREG 95 (275)
T ss_pred hhhhhcchhHHHHHHHhccC
Confidence 99999999999999887543
No 159
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.82 E-value=5.8e-05 Score=46.94 Aligned_cols=52 Identities=23% Similarity=0.507 Sum_probs=44.9
Q ss_pred ceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHH
Q 019152 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAI 317 (345)
Q Consensus 263 ~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al 317 (345)
+.|.|.+.+.... +.+...|..|| +|..+.+.......+|+|.+..+|.+||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fG--eI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFG--EIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcC--CEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 5688989987765 45666899999 8999999988899999999999999985
No 160
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.79 E-value=5.8e-05 Score=46.92 Aligned_cols=52 Identities=17% Similarity=0.313 Sum_probs=42.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHH
Q 019152 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAI 111 (345)
Q Consensus 57 ~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~ 111 (345)
+.|-|.|.+.+.. +++..+|..||+|..+.+. ....+.||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~--~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVP--ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcC--CCCcEEEEEECCHHHHHhhC
Confidence 5688999998774 5566688899999987775 34469999999999999985
No 161
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.76 E-value=2.5e-05 Score=67.99 Aligned_cols=62 Identities=23% Similarity=0.308 Sum_probs=55.6
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC-------------------cceEEEEeCCHHHHHHHHHhh
Q 019152 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-------------------KGFGFVRYSTHAEAALAIQMG 320 (345)
Q Consensus 260 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~-------------------~~~afV~f~~~~~A~~Al~~l 320 (345)
.++++|.+.|||.+-.-+.|.++|..+| .|..|+|.++ +-+|+|+|++.+.|.+|.+.|
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G--~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVG--SIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhccc--ceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3558999999999988899999999999 8999999764 568999999999999999988
Q ss_pred CCC
Q 019152 321 NTT 323 (345)
Q Consensus 321 ~~~ 323 (345)
+..
T Consensus 307 ~~e 309 (484)
T KOG1855|consen 307 NPE 309 (484)
T ss_pred chh
Confidence 766
No 162
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.69 E-value=7.8e-05 Score=62.91 Aligned_cols=77 Identities=27% Similarity=0.421 Sum_probs=63.9
Q ss_pred ceEEEcCCCcccCHHH----H--HHHhhhcCceeeEEEeeeCCc---------ceEEEEeCCHHHHHHHHHhhCCCCccc
Q 019152 263 TTVYVGNLAPEVTQLD----L--HRHFHSLGAGVIEEVRVQRDK---------GFGFVRYSTHAEAALAIQMGNTTQSSY 327 (345)
Q Consensus 263 ~~l~V~nlp~~~t~~~----L--~~~f~~~G~~~i~~v~i~~~~---------~~afV~f~~~~~A~~Al~~l~~~~~~~ 327 (345)
.-+||-+||..+-.|+ | .++|.+|| .|..|.+-+.. -..||+|.+.++|.+++...+|. .
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyG--kI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs---~ 189 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYG--KIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGS---L 189 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhcc--ceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccc---c
Confidence 4589999999887666 3 37899999 88888887541 23499999999999999999999 9
Q ss_pred cCCceEEEeeccccccC
Q 019152 328 LFGKQMKHDAMCGTLCD 344 (345)
Q Consensus 328 ~~g~~l~v~~~~~~~~~ 344 (345)
++||.|+..|+....|.
T Consensus 190 ~DGr~lkatYGTTKYCt 206 (480)
T COG5175 190 LDGRVLKATYGTTKYCT 206 (480)
T ss_pred ccCceEeeecCchHHHH
Confidence 99999999998765553
No 163
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.64 E-value=0.00024 Score=47.55 Aligned_cols=59 Identities=17% Similarity=0.255 Sum_probs=44.2
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCC
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNG 116 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~ 116 (345)
|+.....+|+ .|..+...||.++|+.||.| .|.-+.+. -|||...+.+.|..++..++.
T Consensus 6 P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT---SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 6 PSRDHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT---SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp -SGCCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT---EEEEEECCCHHHHHHHHHHTT
T ss_pred CCcceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC---cEEEEeecHHHHHHHHHHhcc
Confidence 4555666776 99999999999999999998 45555555 499999999999999988753
No 164
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.62 E-value=0.00036 Score=49.46 Aligned_cols=72 Identities=26% Similarity=0.269 Sum_probs=52.9
Q ss_pred ceEEEcCCCcccCHHHHHHHhhhcCceeeEEEe-------------eeCCcceEEEEeCCHHHHHHHHHhhCCCCccccC
Q 019152 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVR-------------VQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLF 329 (345)
Q Consensus 263 ~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~-------------i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~ 329 (345)
+-|.|.+.|... ...|.+.|++|| .|.+.. +........|+|++..+|.+||. -||. .++
T Consensus 7 ~wVtVFGfp~~~-~~~Vl~~F~~~G--~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~---i~~ 79 (100)
T PF05172_consen 7 TWVTVFGFPPSA-SNQVLRHFSSFG--TILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGT---IFS 79 (100)
T ss_dssp CEEEEE---GGG-HHHHHHHHHCCS---EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTE---EET
T ss_pred eEEEEEccCHHH-HHHHHHHHHhcc--eEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCe---EEc
Confidence 568898999984 566889999999 676664 55567889999999999999995 5999 888
Q ss_pred CceEE-Eeecccc
Q 019152 330 GKQMK-HDAMCGT 341 (345)
Q Consensus 330 g~~l~-v~~~~~~ 341 (345)
|.-+. |.|++++
T Consensus 80 g~~mvGV~~~~~~ 92 (100)
T PF05172_consen 80 GSLMVGVKPCDPA 92 (100)
T ss_dssp TCEEEEEEE-HHH
T ss_pred CcEEEEEEEcHHh
Confidence 86554 7887654
No 165
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.47 E-value=8e-05 Score=60.60 Aligned_cols=68 Identities=28% Similarity=0.370 Sum_probs=59.0
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCC----------------CeEEEEEeCHHHHHHHHHHhCCCcc
Q 019152 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS----------------SYGFIHYFDRRSAAMAILSLNGRHL 119 (345)
Q Consensus 56 ~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~----------------~~afv~f~~~~~A~~a~~~l~~~~~ 119 (345)
.-.||+++||+.+...-|+++|+.||.|-+|-+-+.... .-|+|+|.+...|.++...|||..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 356999999999999999999999999999988653211 2468999999999999999999999
Q ss_pred CCCc
Q 019152 120 FGQP 123 (345)
Q Consensus 120 ~g~~ 123 (345)
.|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9876
No 166
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.46 E-value=0.00012 Score=62.67 Aligned_cols=83 Identities=22% Similarity=0.266 Sum_probs=74.2
Q ss_pred CceeEEECCCCccCCHHHHHHHhccCCCcc--------eeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 019152 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCS--------DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR 211 (345)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~ 211 (345)
...++||-+||..+++.+|.++|..+|.|. .+.+.++++++.+++-|.|.|.+...|..|+.-++++.|.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 345899999999999999999999998774 456778889999999999999999999999999999999999
Q ss_pred eEEEEeccCCC
Q 019152 212 QIRCNWATKGA 222 (345)
Q Consensus 212 ~i~v~~~~~~~ 222 (345)
.|+|..+....
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99998876654
No 167
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.46 E-value=0.00016 Score=65.63 Aligned_cols=87 Identities=22% Similarity=0.221 Sum_probs=73.3
Q ss_pred CCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceE
Q 019152 254 EAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (345)
Q Consensus 254 ~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l 333 (345)
..+..+..+..|||.||-..+|...|+.++..-| ..|.+.=|.+-+..|||.|.+.++|.....+|||-.|..-+++.|
T Consensus 436 pSPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtg-g~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 436 PSPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTG-GNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCCCCCCccceEeeecccccchHHHHHHHHhhcc-CchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 3445677889999999999999999999999544 267776555668899999999999999999999997767888999
Q ss_pred EEeecccc
Q 019152 334 KHDAMCGT 341 (345)
Q Consensus 334 ~v~~~~~~ 341 (345)
.+.|+..+
T Consensus 515 ~adf~~~d 522 (718)
T KOG2416|consen 515 IADFVRAD 522 (718)
T ss_pred Eeeecchh
Confidence 99997643
No 168
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.41 E-value=0.00036 Score=59.82 Aligned_cols=82 Identities=23% Similarity=0.277 Sum_probs=69.1
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceE--------EEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCcc
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEG--------CKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHL 119 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~--------v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~ 119 (345)
..+...+|||-+||..+++++|.++|..+|.|.. |++.+++ .++-|.|.|.+...|+.|+..+++..+
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred cccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 4566678999999999999999999999997642 4444444 357999999999999999999999999
Q ss_pred CCCceEEeeccccC
Q 019152 120 FGQPIKVNWAYASG 133 (345)
Q Consensus 120 ~g~~l~v~~~~~~~ 133 (345)
.+.+++|..+....
T Consensus 142 ~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 142 CGNTIKVSLAERRT 155 (351)
T ss_pred cCCCchhhhhhhcc
Confidence 99999998876544
No 169
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.40 E-value=0.00046 Score=57.29 Aligned_cols=61 Identities=21% Similarity=0.233 Sum_probs=53.0
Q ss_pred HHHHHHHHhccCCceEEEEeecCCC-----CeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecc
Q 019152 70 EPLLQEVFSSTGPVEGCKLIRKDKS-----SYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (345)
Q Consensus 70 ~~~l~~~f~~~G~v~~v~~~~~~~~-----~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (345)
++++.+-+.+||.|..|.|....+. --.||+|...++|.+|+-.|||.+|.|+.++..|..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 5678889999999999988776542 357999999999999999999999999999988764
No 170
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.36 E-value=0.00094 Score=47.38 Aligned_cols=72 Identities=21% Similarity=0.078 Sum_probs=51.1
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccCCceEEEE-----------eecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCce
Q 019152 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL-----------IRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPI 124 (345)
Q Consensus 56 ~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~-----------~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l 124 (345)
.+-|.|-|.|+. ....|.+.|+.||.|.+..- ......++..|.|.++.+|.+||. .||..+.|..+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 456899999998 57889999999999877641 011234699999999999999995 59999988644
Q ss_pred -EEeec
Q 019152 125 -KVNWA 129 (345)
Q Consensus 125 -~v~~~ 129 (345)
-|.++
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 45555
No 171
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.32 E-value=0.00014 Score=59.31 Aligned_cols=61 Identities=21% Similarity=0.306 Sum_probs=52.0
Q ss_pred HHHHHHhh-hcCceeeEEEeeeCC-----cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeeccccc
Q 019152 277 LDLHRHFH-SLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCGTL 342 (345)
Q Consensus 277 ~~L~~~f~-~~G~~~i~~v~i~~~-----~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~~~ 342 (345)
+++...|+ +|| +|+.+++..+ .|-+||.|...++|.+|++.||+. ++.|++|...++.-|-
T Consensus 83 Ed~f~E~~~kyg--Eiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnR---w~~G~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 83 EDVFTELEDKYG--EIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNR---WYNGRPIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHHhh--hhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCc---cccCCcceeeecCcCc
Confidence 45555556 999 8998888765 688999999999999999999999 9999999998876553
No 172
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.30 E-value=0.0021 Score=40.88 Aligned_cols=54 Identities=20% Similarity=0.332 Sum_probs=45.0
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhcc----CCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHh
Q 019152 56 CRSVYVGNIHTQVTEPLLQEVFSST----GPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSL 114 (345)
Q Consensus 56 ~~~l~v~~lp~~~t~~~l~~~f~~~----G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l 114 (345)
...|+|+|+. .++.++|..+|..| ++. .|.-+-|.+ |=|.|.+.+.|.+|+.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~-~IEWIdDtS---cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPF-RIEWIDDTS---CNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCc-eEEEecCCc---EEEEECCHHHHHHHHHcC
Confidence 3569999985 48889999999999 544 777777776 999999999999999764
No 173
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.29 E-value=0.00073 Score=55.19 Aligned_cols=98 Identities=21% Similarity=0.288 Sum_probs=74.5
Q ss_pred HHHHHHHHhCCceeCCeeEEEEeccCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCccc
Q 019152 195 DAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEV 274 (345)
Q Consensus 195 ~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~ 274 (345)
-|..|...|++....++.++|.|+.. ..|+|.||...+
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~------------------------------------------a~l~V~nl~~~~ 43 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH------------------------------------------AELYVVNLMQGA 43 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc------------------------------------------ceEEEEecchhh
Confidence 46677778899999999999999865 359999999999
Q ss_pred CHHHHHHHhhhcCceeeEEEeeeC-----CcceEEEEeCCHHHHHHHHHhhCCC-CccccCCceEEEe
Q 019152 275 TQLDLHRHFHSLGAGVIEEVRVQR-----DKGFGFVRYSTHAEAALAIQMGNTT-QSSYLFGKQMKHD 336 (345)
Q Consensus 275 t~~~L~~~f~~~G~~~i~~v~i~~-----~~~~afV~f~~~~~A~~Al~~l~~~-~~~~~~g~~l~v~ 336 (345)
+.+.+...|+.||. |....+.- ..+.++|.|...-.|.+|+..++.. -.....+++..|.
T Consensus 44 sndll~~~f~~fg~--~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 44 SNDLLEQAFRRFGP--IERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred hhHHHHHhhhhcCc--cchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 99999999999994 44433322 2577999999999999999887433 1113444554443
No 174
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.29 E-value=0.00029 Score=64.03 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=63.7
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHh-ccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccC---CCceEEe
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFS-STGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLF---GQPIKVN 127 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~-~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~---g~~l~v~ 127 (345)
....+..|+|.||-...|...|++++. ..|.|++.||-+-+ ..|||.|.+.++|...+.+|+|..+. ++.|.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIK--ShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIK--SHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhh--cceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 456677899999999999999999999 56788888774444 48999999999999999999998774 4667776
Q ss_pred ecc
Q 019152 128 WAY 130 (345)
Q Consensus 128 ~~~ 130 (345)
|..
T Consensus 518 f~~ 520 (718)
T KOG2416|consen 518 FVR 520 (718)
T ss_pred ecc
Confidence 664
No 175
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.28 E-value=0.0015 Score=48.50 Aligned_cols=76 Identities=17% Similarity=0.203 Sum_probs=59.7
Q ss_pred CCCCCCcceEEEcCCCcccC-HHHH---HHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCc
Q 019152 256 PENNPQYTTVYVGNLAPEVT-QLDL---HRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK 331 (345)
Q Consensus 256 ~~~~~~~~~l~V~nlp~~~t-~~~L---~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~ 331 (345)
....++..||.|+=|..++. .+|+ ...++.|| .|.+|... ++..|.|.|.+..+|-+|+.++... .-|.
T Consensus 80 ~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fG--pI~SVT~c-GrqsavVvF~d~~SAC~Av~Af~s~----~pgt 152 (166)
T PF15023_consen 80 NTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFG--PIQSVTLC-GRQSAVVVFKDITSACKAVSAFQSR----APGT 152 (166)
T ss_pred cCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcC--Ccceeeec-CCceEEEEehhhHHHHHHHHhhcCC----CCCc
Confidence 34456778999987777653 3444 45677999 78888775 4779999999999999999998876 7788
Q ss_pred eEEEeec
Q 019152 332 QMKHDAM 338 (345)
Q Consensus 332 ~l~v~~~ 338 (345)
.+.++|-
T Consensus 153 m~qCsWq 159 (166)
T PF15023_consen 153 MFQCSWQ 159 (166)
T ss_pred eEEeecc
Confidence 8999884
No 176
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.27 E-value=0.00015 Score=59.03 Aligned_cols=72 Identities=15% Similarity=0.264 Sum_probs=60.1
Q ss_pred ceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCC--------C----CcccEEEEEeCCHHHHHHHHHHhCCcee
Q 019152 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKT--------G----RSRGFGFVSFRNQQDAQSAINDLTGKWL 208 (345)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--------~----~~~g~~fv~f~~~~~a~~a~~~l~~~~~ 208 (345)
...||+++||+.++..-|+++|+.||.|-.|.+-....+ | ..-.-|+|+|.+...|.++...||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 358999999999999999999999999999887654322 1 2223478999999999999999999999
Q ss_pred CCee
Q 019152 209 GSRQ 212 (345)
Q Consensus 209 ~~~~ 212 (345)
+|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 8864
No 177
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.26 E-value=0.00085 Score=55.78 Aligned_cols=66 Identities=17% Similarity=0.216 Sum_probs=54.1
Q ss_pred HHHHHHHhccCCCcceeEeeecCCCCCc-ccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 019152 155 DATLFACFSVYPSCSDARVMWDQKTGRS-RGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (345)
Q Consensus 155 ~~~l~~~f~~~g~v~~~~~~~~~~~~~~-~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 220 (345)
++++.+.+++||.|..|.|...+..... .--.||+|...+.|.+|+-.|||.+|+|+.++..|-..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 5688899999999999988766433222 22479999999999999999999999999999887644
No 178
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.17 E-value=0.00036 Score=61.03 Aligned_cols=64 Identities=16% Similarity=0.276 Sum_probs=55.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC-----------------CCCeEEEEEeCHHHHHHHHHHhCC
Q 019152 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-----------------KSSYGFIHYFDRRSAAMAILSLNG 116 (345)
Q Consensus 54 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~-----------------~~~~afv~f~~~~~A~~a~~~l~~ 116 (345)
-++++|.+.|||.+-..+.|.++|..+|.|..|.|.+.. .+-+|+|+|...+.|.+|.+.++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 478999999999999999999999999999999998751 124899999999999999987754
Q ss_pred C
Q 019152 117 R 117 (345)
Q Consensus 117 ~ 117 (345)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 3
No 179
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.15 E-value=0.00061 Score=57.96 Aligned_cols=76 Identities=17% Similarity=0.320 Sum_probs=66.8
Q ss_pred CceeEEECCCCccCCHHHHHHHhccCC--CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 019152 140 GHFNIFVGDLSPEVTDATLFACFSVYP--SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (345)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v 215 (345)
...++||+||-..+|++||.+.+...| .+.++++..++.+|.++|||+|...+..+.++.++.|..+.+.|..-.|
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 346899999999999999999998877 4778888888889999999999999999999999999888887765554
No 180
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.12 E-value=0.00026 Score=57.86 Aligned_cols=64 Identities=23% Similarity=0.441 Sum_probs=51.6
Q ss_pred HHHHHHhc-cCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 019152 156 ATLFACFS-VYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (345)
Q Consensus 156 ~~l~~~f~-~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 220 (345)
+++...++ +||+|+.+.+-.+ ..-...|-+||.|..+++|++|+..|++.++.|++|...++..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 35555555 8999999866543 2235667899999999999999999999999999999998644
No 181
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.003 Score=57.38 Aligned_cols=77 Identities=21% Similarity=0.252 Sum_probs=61.6
Q ss_pred CceeEEECCCCccC--C----HHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee-CCee
Q 019152 140 GHFNIFVGDLSPEV--T----DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL-GSRQ 212 (345)
Q Consensus 140 ~~~~l~v~~lp~~~--~----~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~-~~~~ 212 (345)
-..+|+|.|+|--- . ..-|..+|+++|.+....++.+.. |..+||.|++|++.+.|..|++.|+|..+ .+++
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 34689999998532 1 234567899999999998888855 45999999999999999999999999887 4666
Q ss_pred EEEEe
Q 019152 213 IRCNW 217 (345)
Q Consensus 213 i~v~~ 217 (345)
..|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 66653
No 182
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.05 E-value=0.0037 Score=47.14 Aligned_cols=72 Identities=19% Similarity=0.170 Sum_probs=52.0
Q ss_pred CCCcceEEEcCCC-----cccCHH----HHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccC
Q 019152 259 NPQYTTVYVGNLA-----PEVTQL----DLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLF 329 (345)
Q Consensus 259 ~~~~~~l~V~nlp-----~~~t~~----~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~ 329 (345)
+|+..||.|.-.. ....++ +|.+.|..|| ++.-+++.. +.-+|+|.+-..|.+|+ .++|. .++
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~G--evvLvRfv~--~~mwVTF~dg~sALaal-s~dg~---~v~ 95 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYG--EVVLVRFVG--DTMWVTFRDGQSALAAL-SLDGI---QVN 95 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS---ECEEEEET--TCEEEEESSCHHHHHHH-HGCCS---EET
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCC--ceEEEEEeC--CeEEEEECccHHHHHHH-ccCCc---EEC
Confidence 4455678776555 123333 6778899999 677777775 48999999999999999 48999 999
Q ss_pred CceEEEeec
Q 019152 330 GKQMKHDAM 338 (345)
Q Consensus 330 g~~l~v~~~ 338 (345)
|+.|+|+.-
T Consensus 96 g~~l~i~LK 104 (146)
T PF08952_consen 96 GRTLKIRLK 104 (146)
T ss_dssp TEEEEEEE-
T ss_pred CEEEEEEeC
Confidence 999999763
No 183
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.73 E-value=0.0085 Score=44.58 Aligned_cols=73 Identities=15% Similarity=0.267 Sum_probs=55.5
Q ss_pred CCcceEEEeCCCCCC----CHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 54 STCRSVYVGNIHTQV----TEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 54 ~~~~~l~v~~lp~~~----t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
.+-.||.|+=|..++ +...|...++.||+|.+|.+.-.. .|.|.|.+..+|-+|+.++.. ...|..+.+.|-
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq---savVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ---SAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc---eEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 344568887666554 334567778899999999876544 599999999999999998865 667788888775
Q ss_pred c
Q 019152 130 Y 130 (345)
Q Consensus 130 ~ 130 (345)
.
T Consensus 160 q 160 (166)
T PF15023_consen 160 Q 160 (166)
T ss_pred c
Confidence 4
No 184
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.55 E-value=0.016 Score=36.95 Aligned_cols=53 Identities=19% Similarity=0.152 Sum_probs=42.1
Q ss_pred ceEEEcCCCcccCHHHHHHHhhhc----CceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhh
Q 019152 263 TTVYVGNLAPEVTQLDLHRHFHSL----GAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMG 320 (345)
Q Consensus 263 ~~l~V~nlp~~~t~~~L~~~f~~~----G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l 320 (345)
..|+|.++. +++.++|+.+|..| + ...|....+ ..+-|-|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~---~~~IEWIdD-tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEG---PFRIEWIDD-TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCC---CceEEEecC-CcEEEEECCHHHHHHHHHcC
Confidence 469999985 47889999999999 5 445555544 56788899999999999765
No 185
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.52 E-value=0.0068 Score=55.06 Aligned_cols=71 Identities=8% Similarity=0.105 Sum_probs=55.6
Q ss_pred ceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEE
Q 019152 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKH 335 (345)
Q Consensus 263 ~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v 335 (345)
|.|+|+.||+.+..|+++.+|+.-....+.+|.+.-+ ...||+|++..+|..|.+.|... +..|-|++|.-
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N-~nWyITfesd~DAQqAykylree-vk~fqgKpImA 246 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-DNWYITFESDTDAQQAYKYLREE-VKTFQGKPIMA 246 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-CceEEEeecchhHHHHHHHHHHH-HHhhcCcchhh
Confidence 7789999999999999999999533236777776643 46899999999999999888655 22677777643
No 186
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.32 E-value=0.011 Score=53.96 Aligned_cols=71 Identities=23% Similarity=0.235 Sum_probs=56.1
Q ss_pred ceEEEcCCCcc--cC----HHHHHHHhhhcCceeeEEEeeeCC-----cceEEEEeCCHHHHHHHHHhhCCCCccccC-C
Q 019152 263 TTVYVGNLAPE--VT----QLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLF-G 330 (345)
Q Consensus 263 ~~l~V~nlp~~--~t----~~~L~~~f~~~G~~~i~~v~i~~~-----~~~afV~f~~~~~A~~Al~~l~~~~~~~~~-g 330 (345)
..|+|.|+|-- .. ..-|..+|+++| ++....++.+ +|+.|++|.+..+|..|++.|||+ .++ +
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~g--k~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~---~ldkn 133 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAG--KIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGK---RLDKN 133 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhc--cccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccc---eeccc
Confidence 57999999872 22 234567899999 7888888744 799999999999999999999999 554 6
Q ss_pred ceEEEeec
Q 019152 331 KQMKHDAM 338 (345)
Q Consensus 331 ~~l~v~~~ 338 (345)
+++.|..-
T Consensus 134 Htf~v~~f 141 (698)
T KOG2314|consen 134 HTFFVRLF 141 (698)
T ss_pred ceEEeehh
Confidence 77766543
No 187
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.28 E-value=0.016 Score=43.85 Aligned_cols=58 Identities=22% Similarity=0.322 Sum_probs=44.3
Q ss_pred HHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccccC
Q 019152 71 PLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASG 133 (345)
Q Consensus 71 ~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 133 (345)
.+|.+.|..||.+.=++++.+ .-+|.|.+.++|-+|+ .++|..+.|+.|+|..-.+..
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE-----
T ss_pred HHHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCccH
Confidence 367788899998876666543 5899999999999998 689999999999998766543
No 188
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.24 E-value=0.013 Score=46.74 Aligned_cols=63 Identities=16% Similarity=0.013 Sum_probs=49.2
Q ss_pred CHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhC--CCCccccCCceEEEeeccccc
Q 019152 275 TQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN--TTQSSYLFGKQMKHDAMCGTL 342 (345)
Q Consensus 275 t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~--~~~~~~~~g~~l~v~~~~~~~ 342 (345)
....|+++|..++ .+.....+++-+...|.|.+.+.|.+|...|+ +. .+.|..+++.|+..+-
T Consensus 8 ~~~~l~~l~~~~~--~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~---~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYD--PPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGT---SFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT---SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TS---EETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcC--CceEEEEcCCCCEEEEEeCCHHHHHHHHHHhccccc---ccCCCceEEEEccccc
Confidence 3578999999998 78888999998999999999999999999999 88 8999999999986553
No 189
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.08 E-value=0.011 Score=50.60 Aligned_cols=75 Identities=20% Similarity=0.274 Sum_probs=60.4
Q ss_pred cceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeC------CcceEEEEeCCHHHHHHHHHhhCCCCccccCCce-EE
Q 019152 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR------DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ-MK 334 (345)
Q Consensus 262 ~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~------~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~-l~ 334 (345)
..++||+||-+-+|++||.+.....|--.+.++++.. ++|||.|-..+..+.++.++.|-.+ .+.|.. ..
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k---~iHGQ~P~V 156 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTK---TIHGQSPTV 156 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccc---eecCCCCee
Confidence 3689999999999999999999888844566666654 3899999999999999999999888 888754 44
Q ss_pred Eeecc
Q 019152 335 HDAMC 339 (345)
Q Consensus 335 v~~~~ 339 (345)
++|-|
T Consensus 157 ~~~NK 161 (498)
T KOG4849|consen 157 LSYNK 161 (498)
T ss_pred eccch
Confidence 45544
No 190
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.05 E-value=0.095 Score=38.01 Aligned_cols=66 Identities=15% Similarity=0.116 Sum_probs=49.6
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccC-CceEEEEeecCCC--CeEEEEEeCHHHHHHHHHHhCCCccCC
Q 019152 56 CRSVYVGNIHTQVTEPLLQEVFSSTG-PVEGCKLIRKDKS--SYGFIHYFDRRSAAMAILSLNGRHLFG 121 (345)
Q Consensus 56 ~~~l~v~~lp~~~t~~~l~~~f~~~G-~v~~v~~~~~~~~--~~afv~f~~~~~A~~a~~~l~~~~~~g 121 (345)
+..+.+...|+.++.++|..+.+.+- .|..++++++... -.+++.|.+.++|......+||+.+..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 33444555556666777877776665 5778899888753 367889999999999999999988754
No 191
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.92 E-value=0.006 Score=54.36 Aligned_cols=74 Identities=23% Similarity=0.218 Sum_probs=63.5
Q ss_pred CcceEEEcCCCccc-CHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeecc
Q 019152 261 QYTTVYVGNLAPEV-TQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMC 339 (345)
Q Consensus 261 ~~~~l~V~nlp~~~-t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~ 339 (345)
..+.|-+.-.|... +.++|...|.+|| .|..|.+..+.-.|.|+|.+..+|-+|. +.++. .|+||.|+|-|-.
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG--~i~n~qv~~~~~~a~vTF~t~aeag~a~-~s~~a---vlnnr~iKl~whn 444 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFG--EIENIQVDYSSLHAVVTFKTRAEAGEAY-ASHGA---VLNNRFIKLFWHN 444 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcC--ccccccccCchhhheeeeeccccccchh-ccccc---eecCceeEEEEec
Confidence 34667777788865 5788999999999 8999999887788999999999998886 57888 8999999999976
Q ss_pred c
Q 019152 340 G 340 (345)
Q Consensus 340 ~ 340 (345)
.
T Consensus 445 p 445 (526)
T KOG2135|consen 445 P 445 (526)
T ss_pred C
Confidence 5
No 192
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.86 E-value=0.043 Score=37.01 Aligned_cols=55 Identities=15% Similarity=0.154 Sum_probs=40.2
Q ss_pred ceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCC
Q 019152 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNT 322 (345)
Q Consensus 263 ~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~ 322 (345)
...+|. .|......||.++|++||.+. |.... ...|||...+.+.|..|+..+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~---VsWi~-dTSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY---VSWIN-DTSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE---EEEEC-TTEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE---EEEEc-CCcEEEEeecHHHHHHHHHHhcc
Confidence 345664 999999999999999999544 44443 46899999999999999887763
No 193
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.73 E-value=0.013 Score=46.67 Aligned_cols=67 Identities=12% Similarity=0.032 Sum_probs=45.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhc-cCCc---eEEEEeecC------CCCeEEEEEeCHHHHHHHHHHhCCCccCC
Q 019152 55 TCRSVYVGNIHTQVTEPLLQEVFSS-TGPV---EGCKLIRKD------KSSYGFIHYFDRRSAAMAILSLNGRHLFG 121 (345)
Q Consensus 55 ~~~~l~v~~lp~~~t~~~l~~~f~~-~G~v---~~v~~~~~~------~~~~afv~f~~~~~A~~a~~~l~~~~~~g 121 (345)
....|.|++||+++|++++.+.++. ++.. ..+.-.... ...-|||.|.+.+++......++|..|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 4568999999999999999998887 6654 233211111 12479999999999999999999987754
No 194
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.63 E-value=0.0092 Score=55.50 Aligned_cols=69 Identities=22% Similarity=0.311 Sum_probs=60.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 55 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
+.-+|||+|+-..+..+-++..+..+|-|-+.+... |||..|.....+.+|+..++-..+.|..+.++.
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 446799999999999999999999999887765544 899999999999999999998999888877765
No 195
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=95.59 E-value=0.0085 Score=57.19 Aligned_cols=73 Identities=18% Similarity=0.161 Sum_probs=63.9
Q ss_pred EEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeeccc
Q 019152 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCG 340 (345)
Q Consensus 265 l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~ 340 (345)
..+.|.+-+.+...|..+|..|| .+.+...+++-..|.|+|.+.+.|..|+++++|+++ ..-|-+.+|.+||-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg--~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkev-s~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYG--SVASAWTLRDLNMALVSFSSVESAILALDALQGKEV-SVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhc--chhhheecccccchhhhhHHHHHHHHhhhhhcCCcc-cccCCceeEEeccc
Confidence 44555566778889999999999 899999999999999999999999999999999977 56777899999874
No 196
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.28 E-value=0.085 Score=47.05 Aligned_cols=69 Identities=14% Similarity=0.179 Sum_probs=59.5
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccC-CceEEEEeecCCC--CeEEEEEeCHHHHHHHHHHhCCCccCC
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTG-PVEGCKLIRKDKS--SYGFIHYFDRRSAAMAILSLNGRHLFG 121 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G-~v~~v~~~~~~~~--~~afv~f~~~~~A~~a~~~l~~~~~~g 121 (345)
+.+++.|.|-.+|..++..||..|+..+- .|..+++++|+.. -.+++.|.+.++|......+||..|..
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 34478899999999999999999998765 6889999997643 467899999999999999999988754
No 197
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.20 E-value=0.018 Score=53.64 Aligned_cols=82 Identities=18% Similarity=0.229 Sum_probs=68.5
Q ss_pred CCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEE
Q 019152 255 APENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (345)
Q Consensus 255 ~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~ 334 (345)
.....++..++||+|+.+.+..+-++.+...+| .|.+..... |||+.|..+..+.+|+..++-. .++|..+.
T Consensus 33 ~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g--~v~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~---~~~~~kl~ 104 (668)
T KOG2253|consen 33 VFQPLPPRDTVFVGNISYLVSQEFWKSILAKSG--FVPSWKRDK---FGFCEFLKHIGDLRASRLLTEL---NIDDQKLI 104 (668)
T ss_pred cccCCCCCceeEecchhhhhhHHHHHHHHhhCC--cchhhhhhh---hcccchhhHHHHHHHHHHhccc---CCCcchhh
Confidence 334456678999999999999999999999999 454444433 9999999999999999999988 89999998
Q ss_pred EeeccccccC
Q 019152 335 HDAMCGTLCD 344 (345)
Q Consensus 335 v~~~~~~~~~ 344 (345)
+.-.+.||+|
T Consensus 105 ~~~d~q~~~n 114 (668)
T KOG2253|consen 105 ENVDEQTIEN 114 (668)
T ss_pred ccchhhhhcC
Confidence 8877777776
No 198
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.19 E-value=0.14 Score=34.32 Aligned_cols=68 Identities=16% Similarity=0.266 Sum_probs=39.4
Q ss_pred eEEEcCCCc--ccCHHHHHHHhhhcC---ceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeec
Q 019152 264 TVYVGNLAP--EVTQLDLHRHFHSLG---AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAM 338 (345)
Q Consensus 264 ~l~V~nlp~--~~t~~~L~~~f~~~G---~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~ 338 (345)
+++| |+.. .++..+|..++...+ ...|-.|.+... ++||+-.. +.|..++..|++. .+.|++++|+.|
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--~S~vev~~-~~a~~v~~~l~~~---~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--FSFVEVPE-EVAEKVLEALNGK---KIKGKKVRVERA 74 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---EEEEE-T-T-HHHHHHHHTT-----SSS----EEE-
T ss_pred EEEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--EEEEEECH-HHHHHHHHHhcCC---CCCCeeEEEEEC
Confidence 3555 4544 678889988887654 235556666654 88998864 5888899999999 999999999864
No 199
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.04 E-value=0.011 Score=50.57 Aligned_cols=76 Identities=17% Similarity=0.227 Sum_probs=61.1
Q ss_pred ceEEEeCCCCCCCHHHHH---HHHhccCCceEEEEeecCC-------CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEE
Q 019152 57 RSVYVGNIHTQVTEPLLQ---EVFSSTGPVEGCKLIRKDK-------SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (345)
Q Consensus 57 ~~l~v~~lp~~~t~~~l~---~~f~~~G~v~~v~~~~~~~-------~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (345)
.-+||-+|+..+..+++. ++|..||.|.+|.+.++.+ .--+||.|...++|..||...+|..+.|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 457888999886554443 5888999999998877652 125799999999999999999999999999888
Q ss_pred eecccc
Q 019152 127 NWAYAS 132 (345)
Q Consensus 127 ~~~~~~ 132 (345)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 776544
No 200
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.00 E-value=0.07 Score=48.79 Aligned_cols=94 Identities=14% Similarity=0.120 Sum_probs=66.6
Q ss_pred HHHHHHHhCCCccCCCceEEeeccccCCCCCCCCceeEEECCCCccCCHHHHHHHhcc--CCCcceeEeeecCCCCCccc
Q 019152 107 AAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSV--YPSCSDARVMWDQKTGRSRG 184 (345)
Q Consensus 107 A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~--~g~v~~~~~~~~~~~~~~~g 184 (345)
-..+++...+..++.+-.+|.... ..+.|.|+.||.+.-.++++.+|+. +..+.++.+-.+.
T Consensus 150 I~Evlresp~VqvDekgekVrp~~---------kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------- 213 (684)
T KOG2591|consen 150 IVEVLRESPNVQVDEKGEKVRPNH---------KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------- 213 (684)
T ss_pred HHHHHhcCCCceeccCccccccCc---------ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------
Confidence 344555555555666655655432 3357888999999999999999975 6677787766442
Q ss_pred EEEEEeCCHHHHHHHHHHhCC--ceeCCeeEEEE
Q 019152 185 FGFVSFRNQQDAQSAINDLTG--KWLGSRQIRCN 216 (345)
Q Consensus 185 ~~fv~f~~~~~a~~a~~~l~~--~~~~~~~i~v~ 216 (345)
--||+|++..+|..|.+.|.. +.|-|+.|..+
T Consensus 214 nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 214 NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 179999999999999887754 45666666544
No 201
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.98 E-value=0.48 Score=34.40 Aligned_cols=75 Identities=13% Similarity=-0.011 Sum_probs=52.1
Q ss_pred ceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC----cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeec
Q 019152 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAM 338 (345)
Q Consensus 263 ~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~----~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~ 338 (345)
..+.+...|.-++.++|..+.+.+- ..|..++|.++ +-.+.++|.+.+.|..-...+||++...+.....+|-|-
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~-~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~ChvvfV 92 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFR-EDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVVFV 92 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhccc-ccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEEEE
Confidence 3445545555566666766666554 47888888876 457899999999999999999999544455555554443
No 202
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.88 E-value=0.019 Score=54.92 Aligned_cols=72 Identities=22% Similarity=0.321 Sum_probs=61.4
Q ss_pred EEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCcc--CCCceEEeecccc
Q 019152 59 VYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHL--FGQPIKVNWAYAS 132 (345)
Q Consensus 59 l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~--~g~~l~v~~~~~~ 132 (345)
.++.|.+-..+..-|..+|..||.|.+.|..++-+ .|.|+|.+.++|..|+.+|.|+.+ -|.+.+|.+++.-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 44556667778899999999999999999988776 799999999999999999999765 4788888887653
No 203
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.72 E-value=0.011 Score=50.54 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=61.6
Q ss_pred eEEEcCCCcccCHHHHH---HHhhhcCceeeEEEeeeCC---------cceEEEEeCCHHHHHHHHHhhCCCCccccCCc
Q 019152 264 TVYVGNLAPEVTQLDLH---RHFHSLGAGVIEEVRVQRD---------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK 331 (345)
Q Consensus 264 ~l~V~nlp~~~t~~~L~---~~f~~~G~~~i~~v~i~~~---------~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~ 331 (345)
-+||-+|+..+-++++. +.|..|| .|..|.+.++ ...++|+|...++|..||...+|. ..+|+
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqyg--ki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~---~~dg~ 153 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYG--KINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGF---VDDGR 153 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccc--cceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhH---Hhhhh
Confidence 46788888887666654 5788888 7888887764 245899999999999999999999 99999
Q ss_pred eEEEeeccccccC
Q 019152 332 QMKHDAMCGTLCD 344 (345)
Q Consensus 332 ~l~v~~~~~~~~~ 344 (345)
.|+.+++....|.
T Consensus 154 ~lka~~gttkycs 166 (327)
T KOG2068|consen 154 ALKASLGTTKYCS 166 (327)
T ss_pred hhHHhhCCCcchh
Confidence 9998888766653
No 204
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.63 E-value=0.044 Score=43.66 Aligned_cols=82 Identities=13% Similarity=0.222 Sum_probs=50.6
Q ss_pred CceeEEECCCCccCCHHHHHHHhcc-CCCc---ceeEeeecCCC--CCcccEEEEEeCCHHHHHHHHHHhCCceeCC---
Q 019152 140 GHFNIFVGDLSPEVTDATLFACFSV-YPSC---SDARVMWDQKT--GRSRGFGFVSFRNQQDAQSAINDLTGKWLGS--- 210 (345)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~-~g~v---~~~~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~--- 210 (345)
....|.|++||++++++++.+.++. ++.. ..+........ .....-|||.|.+.+++....+.++|..|-+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3468999999999999999998887 5554 22221122111 1233569999999999999999999987732
Q ss_pred --eeEEEEeccCC
Q 019152 211 --RQIRCNWATKG 221 (345)
Q Consensus 211 --~~i~v~~~~~~ 221 (345)
..-.|++|.-.
T Consensus 86 ~~~~~~VE~Apyq 98 (176)
T PF03467_consen 86 NEYPAVVEFAPYQ 98 (176)
T ss_dssp -EEEEEEEE-SS-
T ss_pred CCcceeEEEcchh
Confidence 34556666543
No 205
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.93 E-value=0.22 Score=39.82 Aligned_cols=63 Identities=21% Similarity=0.153 Sum_probs=46.3
Q ss_pred CHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhC--CceeCCeeEEEEeccCCC
Q 019152 154 TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT--GKWLGSRQIRCNWATKGA 222 (345)
Q Consensus 154 ~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~--~~~~~~~~i~v~~~~~~~ 222 (345)
..+.|+++|..++.+..+..++. -+-..|.|.+.++|.+|...|+ +..+.|..+++.|+....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 45789999999999888877733 3458999999999999999999 899999999999985443
No 206
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.74 E-value=0.23 Score=42.03 Aligned_cols=71 Identities=23% Similarity=0.192 Sum_probs=54.0
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCc-eEEeecccc
Q 019152 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQP-IKVNWAYAS 132 (345)
Q Consensus 58 ~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~-l~v~~~~~~ 132 (345)
=|-|-|+|+.- -..|...|+.||.|.+... ..+.++-+|.|.+..+|.+||. .||+.|.|.. |-|..+.++
T Consensus 199 WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~--~~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 199 WVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVT--PSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred eEEEeccCccc-hhHHHHHHHhhCeeeeeec--CCCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCH
Confidence 36777888764 4678899999999876544 3566799999999999999995 5898888753 445555444
No 207
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.73 E-value=0.41 Score=31.09 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=44.5
Q ss_pred ccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEE
Q 019152 273 EVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKH 335 (345)
Q Consensus 273 ~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v 335 (345)
.++-++++..+.+|+ -..|.. ++.--||.|.+..+|.++....+|. .+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~---~~~I~~--d~tGfYIvF~~~~Ea~rC~~~~~~~---~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR---WDRIRD--DRTGFYIVFNDSKEAERCFRAEDGT---LFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC---cceEEe--cCCEEEEEECChHHHHHHHHhcCCC---EEEEEEEEe
Confidence 577899999999997 444443 4556789999999999999999999 777776654
No 208
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.60 E-value=0.45 Score=30.88 Aligned_cols=55 Identities=18% Similarity=0.291 Sum_probs=42.5
Q ss_pred cCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 019152 152 EVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (345)
Q Consensus 152 ~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v 215 (345)
.++-++++..+..|+ .. ++..+ .+| -||.|.+.++|+++....++..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~--~I~~d-~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WD--RIRDD-RTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cc--eEEec-CCE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 467789999999983 23 34433 344 689999999999999999999888776654
No 209
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.49 E-value=0.32 Score=41.22 Aligned_cols=63 Identities=22% Similarity=0.232 Sum_probs=49.9
Q ss_pred eEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceE
Q 019152 264 TVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (345)
Q Consensus 264 ~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l 333 (345)
=|-|.++|..-. .-|...|++|| .|......+...+.+|.|.+..+|.+||.+ ||+ .|+|..+
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG--~Vvkhv~~~ngNwMhirYssr~~A~KALsk-ng~---ii~g~vm 261 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCG--EVVKHVTPSNGNWMHIRYSSRTHAQKALSK-NGT---IIDGDVM 261 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhC--eeeeeecCCCCceEEEEecchhHHHHhhhh-cCe---eeccceE
Confidence 356667777543 45778899999 888887777778999999999999999965 888 7777554
No 210
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.24 E-value=0.45 Score=42.68 Aligned_cols=75 Identities=20% Similarity=0.154 Sum_probs=60.3
Q ss_pred cceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC----cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEee
Q 019152 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDA 337 (345)
Q Consensus 262 ~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~----~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~ 337 (345)
++.|+|-.+|..+|-.||..++..+- ..|..+++.++ +-.+.|+|.+.++|..-...+||++.-.+..-..+|=|
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~-~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~le~e~Chll~ 152 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFI-KQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNSLEPEVCHLLY 152 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHh-hhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCCCCccceeEEE
Confidence 57899999999999999999999885 47888988876 55689999999999999999999943334443333333
No 211
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.00 E-value=0.062 Score=48.17 Aligned_cols=75 Identities=20% Similarity=0.190 Sum_probs=60.9
Q ss_pred cceEEEeCCCCCC-CHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccccC
Q 019152 56 CRSVYVGNIHTQV-TEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASG 133 (345)
Q Consensus 56 ~~~l~v~~lp~~~-t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 133 (345)
.+.|-+.-.|..+ +-.+|...|..||.|+.|.+-.. .-.|.|+|.+..+|-+|. +..+..|.++.|+|.|..+..
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~--~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS--SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc--hhhheeeeeccccccchh-ccccceecCceeEEEEecCCc
Confidence 4455666666664 56899999999999999988555 236999999999998886 568999999999999997654
No 212
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=92.92 E-value=5.3 Score=34.07 Aligned_cols=173 Identities=8% Similarity=0.107 Sum_probs=100.3
Q ss_pred CCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecC-------CCCCcccEEEEEeCCHHHHHHHH----HHhCC--
Q 019152 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQ-------KTGRSRGFGFVSFRNQQDAQSAI----NDLTG-- 205 (345)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~-------~~~~~~g~~fv~f~~~~~a~~a~----~~l~~-- 205 (345)
-.++.|.+.|+..+++--.+...|.+||+|+++.++.+. ...+......+.|-+.+.|.... +.|..
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 335678899999999999999999999999999998664 01133456788999998876543 33332
Q ss_pred ceeCCeeEEEEeccCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHH-HHHH--
Q 019152 206 KWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLD-LHRH-- 282 (345)
Q Consensus 206 ~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~-L~~~-- 282 (345)
..+....+.+.|..-........ ..+..+...... ......-......|.|.|.-- ..+..++ +.+.
T Consensus 93 ~~L~S~~L~lsFV~l~y~~~~~~-~~~~~~~~~~~~--------~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~ 162 (309)
T PF10567_consen 93 TKLKSESLTLSFVSLNYQKKTDP-NDEEADFSDYLV--------ASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLP 162 (309)
T ss_pred HhcCCcceeEEEEEEeccccccc-cccccchhhHHh--------hhhhheeecCCcceEEEEEec-CccchhHHHHHhhh
Confidence 34567778887776433322211 000000000000 000000111123367777533 4443333 3332
Q ss_pred -hhhcC--ceeeEEEeeeC--------CcceEEEEeCCHHHHHHHHHhhC
Q 019152 283 -FHSLG--AGVIEEVRVQR--------DKGFGFVRYSTHAEAALAIQMGN 321 (345)
Q Consensus 283 -f~~~G--~~~i~~v~i~~--------~~~~afV~f~~~~~A~~Al~~l~ 321 (345)
...-+ ...+++|-+.. ++.+|.++|-+..-|...++-+.
T Consensus 163 fL~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 163 FLKNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred hhccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 22222 23566666642 26899999999999999988776
No 213
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=91.92 E-value=0.23 Score=34.27 Aligned_cols=67 Identities=10% Similarity=0.052 Sum_probs=44.4
Q ss_pred EEEEEeCHHHHHHHHHHh-CCCccCCCceEEeeccc--cC----CCCCCCCceeEEECCCCccCCHHHHHHHhc
Q 019152 97 GFIHYFDRRSAAMAILSL-NGRHLFGQPIKVNWAYA--SG----QREDTSGHFNIFVGDLSPEVTDATLFACFS 163 (345)
Q Consensus 97 afv~f~~~~~A~~a~~~l-~~~~~~g~~l~v~~~~~--~~----~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~ 163 (345)
|+|.|.++.-|.+.++.- +...+.+..+.|....- .. .-....+.++|.++|||...++++|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 689999999999998642 12344555555543322 11 122345567899999999999998886554
No 214
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=91.16 E-value=0.39 Score=33.13 Aligned_cols=73 Identities=15% Similarity=0.152 Sum_probs=45.1
Q ss_pred EEEEeCCHHHHHHHHHHhC-CceeCCeeEEEEeccCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcce
Q 019152 186 GFVSFRNQQDAQSAINDLT-GKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTT 264 (345)
Q Consensus 186 ~fv~f~~~~~a~~a~~~l~-~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (345)
|.|+|.++.-|.+.++.-. ...+++..+.|.-..-.......-. .......++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~q--------------------------v~~~vs~rt 54 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQ--------------------------VFSGVSKRT 54 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEE--------------------------EEEcccCCE
Confidence 5799999999999987321 1235677776654432211111000 011123378
Q ss_pred EEEcCCCcccCHHHHHHHhh
Q 019152 265 VYVGNLAPEVTQLDLHRHFH 284 (345)
Q Consensus 265 l~V~nlp~~~t~~~L~~~f~ 284 (345)
|.|.|||....+++|++..+
T Consensus 55 Vlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 55 VLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred EEEeCCCCCCChhhheeeEE
Confidence 99999999999999986544
No 215
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=90.24 E-value=0.79 Score=38.84 Aligned_cols=159 Identities=14% Similarity=0.208 Sum_probs=104.1
Q ss_pred CCCCCCCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC-----------CCCeEEEEEeCHHHHHHHHH---
Q 019152 47 LPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-----------KSSYGFIHYFDRRSAAMAIL--- 112 (345)
Q Consensus 47 ~~~~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~-----------~~~~afv~f~~~~~A~~a~~--- 112 (345)
+|.+.+.-.+|.|...|+..+++-..+...|-+||+|++|.++.+. ......+.|-+.+.+-....
T Consensus 6 LPkGdD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvL 85 (309)
T PF10567_consen 6 LPKGDDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVL 85 (309)
T ss_pred cCCCCccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHH
Confidence 4566677888999999999999999999999999999999999865 12467899999998866542
Q ss_pred -HhCC--CccCCCceEEeeccccCC-----------------------CCCCCCceeEEECCCCccCCHHHHHH-H---h
Q 019152 113 -SLNG--RHLFGQPIKVNWAYASGQ-----------------------REDTSGHFNIFVGDLSPEVTDATLFA-C---F 162 (345)
Q Consensus 113 -~l~~--~~~~g~~l~v~~~~~~~~-----------------------~~~~~~~~~l~v~~lp~~~~~~~l~~-~---f 162 (345)
+|+. ..+....|.+.+..-+-. -......+.|.|. +...+..+++.+ . +
T Consensus 86 QrLsEfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL 164 (309)
T PF10567_consen 86 QRLSEFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFL 164 (309)
T ss_pred HHHHHHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhh
Confidence 2322 345566777776642100 0122334556553 333443443322 1 2
Q ss_pred ccCC----CcceeEeeecCC--CCCcccEEEEEeCCHHHHHHHHHHhCCc
Q 019152 163 SVYP----SCSDARVMWDQK--TGRSRGFGFVSFRNQQDAQSAINDLTGK 206 (345)
Q Consensus 163 ~~~g----~v~~~~~~~~~~--~~~~~g~~fv~f~~~~~a~~a~~~l~~~ 206 (345)
..-+ .++++.++.... ..-+..||.+.|-+..-|.+.+..+...
T Consensus 165 ~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~ 214 (309)
T PF10567_consen 165 KNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSN 214 (309)
T ss_pred ccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhc
Confidence 2213 256666653322 1235679999999999999998877643
No 216
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=90.12 E-value=0.89 Score=38.21 Aligned_cols=52 Identities=13% Similarity=0.195 Sum_probs=44.2
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHH
Q 019152 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHA 311 (345)
Q Consensus 259 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~ 311 (345)
.+..+.|+++||+.++.-.||+..+.+.|. ...++.+.-..+.||+.|.+..
T Consensus 327 a~~~~di~~~nl~rd~rv~dlk~~lr~~~~-~pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 327 AGAKTDIKLTNLSRDIRVKDLKSELRKREC-TPMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred CccccceeeccCccccchHHHHHHHHhcCC-CceeEeeecCCcceeEecCCcc
Confidence 344467999999999999999999999884 6677888888999999998764
No 217
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=88.14 E-value=0.99 Score=30.13 Aligned_cols=59 Identities=15% Similarity=0.314 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHhccCCc-----eEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 66 TQVTEPLLQEVFSSTGPV-----EGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 66 ~~~t~~~l~~~f~~~G~v-----~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
..++..+|..++...+.| -.|.+.. .|+||+-... .|..++..|++..+.|++++|+.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~----~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD----NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S----S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee----eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 457888999999877544 3455532 3899988665 789999999999999999999754
No 218
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=88.06 E-value=0.84 Score=35.77 Aligned_cols=73 Identities=18% Similarity=0.074 Sum_probs=56.1
Q ss_pred ceEEEcCCCcccCH-----HHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCc-eEEEe
Q 019152 263 TTVYVGNLAPEVTQ-----LDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK-QMKHD 336 (345)
Q Consensus 263 ~~l~V~nlp~~~t~-----~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~-~l~v~ 336 (345)
.++.+.+++..+.. .....+|..|- +.....+.++.+...|.|.+.+.|..|...+++. .|.|+ .++.-
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n--~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~---~f~~~~~~k~y 85 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQIN--EDATFQLLRSFRRVRINFSNPEAAADARIKLHST---SFNGKNELKLY 85 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhC--cchHHHHHHhhceeEEeccChhHHHHHHHHhhhc---ccCCCceEEEE
Confidence 45788888886532 22345677775 5666677778888999999999999999999999 89888 88877
Q ss_pred eccc
Q 019152 337 AMCG 340 (345)
Q Consensus 337 ~~~~ 340 (345)
|+..
T Consensus 86 faQ~ 89 (193)
T KOG4019|consen 86 FAQP 89 (193)
T ss_pred EccC
Confidence 7643
No 219
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.53 E-value=7.3 Score=36.49 Aligned_cols=130 Identities=12% Similarity=0.174 Sum_probs=75.0
Q ss_pred CCCcceEEEeCCCCC-CCHHHHHHHHhcc----CCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEe
Q 019152 53 PSTCRSVYVGNIHTQ-VTEPLLQEVFSST----GPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~-~t~~~l~~~f~~~----G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (345)
...+++|=|.|+.++ +...+|.-+|+.| |.|.+|.|.+.. |-.. .|.-..+.|-.+.+-
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe--------FGke--------RM~eEeV~GP~~el~ 234 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE--------FGKE--------RMKEEEVHGPPKELF 234 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh--------hhHH--------HhhhhcccCChhhhc
Confidence 456788999999987 8889999988865 478888886543 1111 122223333322221
Q ss_pred eccccCCCCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 019152 128 WAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 207 (345)
Q Consensus 128 ~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~ 207 (345)
-...... .. . .+...-++-.++-+..| .+..++.. ||.|+|.+.+.|......|.|..
T Consensus 235 ~~~e~~~-~s-----~-----sD~ee~~~~~~~kLR~Y-q~~rLkYY----------yAVvecDsi~tA~~vYe~CDG~E 292 (650)
T KOG2318|consen 235 KPVEEYK-ES-----E-----SDDEEEEDVDREKLRQY-QLNRLKYY----------YAVVECDSIETAKAVYEECDGIE 292 (650)
T ss_pred cccccCc-cc-----c-----cchhhhhhHHHHHHHHH-HhhhheeE----------EEEEEecCchHHHHHHHhcCcce
Confidence 1111000 00 0 00111111224445555 23333333 79999999999999999999999
Q ss_pred eC--CeeEEEEeccC
Q 019152 208 LG--SRQIRCNWATK 220 (345)
Q Consensus 208 ~~--~~~i~v~~~~~ 220 (345)
+. +..+-++|...
T Consensus 293 fEsS~~~~DLRFIPD 307 (650)
T KOG2318|consen 293 FESSANKLDLRFIPD 307 (650)
T ss_pred eccccceeeeeecCC
Confidence 85 55666666543
No 220
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=86.50 E-value=1.6 Score=36.73 Aligned_cols=54 Identities=11% Similarity=0.177 Sum_probs=42.2
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHH
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRS 106 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~ 106 (345)
.......|+++||+.++.-.||+..+.+.|.+ -..+......|-||+.|.+...
T Consensus 326 ~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswkg~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 326 EAGAKTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWKGHFGKCFLHFGNRKG 379 (396)
T ss_pred cCccccceeeccCccccchHHHHHHHHhcCCC-ceeEeeecCCcceeEecCCccC
Confidence 34445569999999999999999999988754 3456667777889999987543
No 221
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.11 E-value=8.6 Score=33.32 Aligned_cols=55 Identities=13% Similarity=0.207 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHhc-------------cCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecccc
Q 019152 66 TQVTEPLLQEVFSS-------------TGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (345)
Q Consensus 66 ~~~t~~~l~~~f~~-------------~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (345)
.-||..+|.+|=.. .|.+..|++....+..|-|-+|.+... =-|--+...|..+.
T Consensus 301 s~WtRpdI~~FK~~i~~d~~~gvItvGhGetVTVRVPThenGsclFWEFATD~Y------------DIGFGvYFEWt~~~ 368 (469)
T KOG3878|consen 301 SIWTRPDIEQFKTEISADDGDGVITVGHGETVTVRVPTHENGSCLFWEFATDSY------------DIGFGVYFEWTKPV 368 (469)
T ss_pred hhcCcccHHHHHHHhccCCCCCeEEecCCceEEEeccccCCCceEEEEeccccc------------cccceEEEEeecCC
Confidence 44777777766543 244555666555566688999976532 12455666776544
No 222
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=78.36 E-value=2 Score=43.53 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=13.9
Q ss_pred EEEcCCCcccCHHHHHHHhhhcC
Q 019152 265 VYVGNLAPEVTQLDLHRHFHSLG 287 (345)
Q Consensus 265 l~V~nlp~~~t~~~L~~~f~~~G 287 (345)
.-++|.....+...-..++..||
T Consensus 2065 ~~~~n~~s~~n~s~~qq~~~~~~ 2087 (2131)
T KOG4369|consen 2065 SSLGNASSTTNPSRTQQMYQQYG 2087 (2131)
T ss_pred chhcccCCCCCccHHHHHHHHhc
Confidence 45567666555555566666666
No 223
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.14 E-value=19 Score=33.84 Aligned_cols=82 Identities=17% Similarity=0.149 Sum_probs=63.8
Q ss_pred CCCCCCcceEEEcCCCc-ccCHHHHHHHhhh---cCceeeEEEeeeCC--------------------------------
Q 019152 256 PENNPQYTTVYVGNLAP-EVTQLDLHRHFHS---LGAGVIEEVRVQRD-------------------------------- 299 (345)
Q Consensus 256 ~~~~~~~~~l~V~nlp~-~~t~~~L~~~f~~---~G~~~i~~v~i~~~-------------------------------- 299 (345)
+.....++.|-|.||.+ .+..++|.-+|+. .| +.|.+|.|.++
T Consensus 168 ~~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~g-GsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD 246 (650)
T KOG2318|consen 168 PVLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKG-GSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESD 246 (650)
T ss_pred cccccccceeeEeccccccccHHHHHHHHHhhcCCC-CceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccc
Confidence 45566778999999999 5789999988874 44 37888888532
Q ss_pred ---------------------cceEEEEeCCHHHHHHHHHhhCCCCccccC--CceEEEeecccc
Q 019152 300 ---------------------KGFGFVRYSTHAEAALAIQMGNTTQSSYLF--GKQMKHDAMCGT 341 (345)
Q Consensus 300 ---------------------~~~afV~f~~~~~A~~Al~~l~~~~~~~~~--g~~l~v~~~~~~ 341 (345)
--||.|+|.+...|......++|. .|. +..|-+.|..+.
T Consensus 247 ~ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~---EfEsS~~~~DLRFIPDd 308 (650)
T KOG2318|consen 247 DEEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGI---EFESSANKLDLRFIPDD 308 (650)
T ss_pred hhhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcc---eeccccceeeeeecCCC
Confidence 025889999999999999999999 665 566777776654
No 224
>COG5624 TAF61 Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=77.46 E-value=3.7 Score=36.50 Aligned_cols=11 Identities=9% Similarity=0.129 Sum_probs=4.6
Q ss_pred HHHHHHHhhhc
Q 019152 276 QLDLHRHFHSL 286 (345)
Q Consensus 276 ~~~L~~~f~~~ 286 (345)
+++|..-..+-
T Consensus 460 ~d~I~~s~rk~ 470 (505)
T COG5624 460 DDIIHMSYRKQ 470 (505)
T ss_pred HHHHHHHHHhc
Confidence 44454333333
No 225
>PF02166 Androgen_recep: Androgen receptor; InterPro: IPR001103 Steroid or nuclear hormone receptors (NRs) constitute an important super-family of transcription regulators that are involved in diverse physiological functions, including control of embryonic development, cell differentiation and homeostasis. Members include the steroid hormone receptors and receptors for thyroid hormone, retinoids and 1,25-dihydroxy-vitamin D3. The proteins function as dimeric molecules in the nucleus to regulate the transcription of target genes in a ligand-responsive manner [, ]. NRs are extremely important in medical research, a large number of them being implicated in diseases such as cancer, diabetes and hormone resistance syndromes. Many do not yet have a defined ligand and are accordingly termed "orphan" receptors. More than 300 NRs have been described to date and a new system has recently been introduced in an attempt to rationalise the increasingly complex set of names used to describe superfamily members. The androgen receptor (AR) consists of 3 functional and structural domains: an N-terminal (modulatory) domain; a DNA binding domain (IPR001628 from INTERPRO) that mediates specific binding to target DNA sequences (ligand-responsive elements); and a hormone binding domain. The N-terminal domain (NTD) is unique to the androgen receptors and spans approximately the first 530 residues; the highly-conserved DNA-binding domain is smaller (around 65 residues) and occupies the central portion of the protein; and the hormone ligand binding domain (LBD) lies at the receptor C terminus. In the absence of ligand, steroid hormone receptors are thought to be weakly associated with nuclear components; hormone binding greatly increases receptor affinity. The LBDs of steroid hormone receptors fold into 12 helices that form a ligand-binding pocket. When an agonist is bound, helix 12 folds over the pocket to enclose the ligand []. When an antagonist is unbound, helix 12 is positioned away from the pocket in a way that interferes with the binding of coactivators to a groove in the hormone-binding domain formed after ligand binding. In AR, ligand binding that induces folding of helix 12 to overlie the pocket discloses a groove that binds a region of the NTD. Coactivator molecules can also bind to this groove, but the predominant site for coactivator binding to AR is in the NTD. AR ligand resides in a pocket and primarily contacts helices 4, 5, and 10. The DNA-binding region includes eight cysteine residues that form two coordination complexes, each composed of four cysteines and a Zn2+ ion. These two zinc fingers form the structure that binds to the major groove of DNA. The second zinc finger stabilises the binding complex by hydrophobic interactions with the first finger and contributes to specificity of receptor DNA binding. It is also necessary for receptor dimerisation that occurs during DNA binding Defects in the androgen receptor cause testicular feminisation syndrome, androgen insensibility syndrome (AIS) [, ]. AIS may be complete (CAIS), where external genitalia are phenotypically female; partial (PAIS), where genitalia are substantively ambiguous; or mild (MAIS), where external genitalia are normal male, or nearly so. Defects in the receptor also cause X-linked spinal and bulbar muscular atrophy (also known as Kennedy's disease).; GO: 0003677 DNA binding, 0004882 androgen receptor activity, 0005496 steroid binding, 0006355 regulation of transcription, DNA-dependent, 0030521 androgen receptor signaling pathway, 0005634 nucleus; PDB: 1XOW_B 2Q7K_B 2Q7I_B.
Probab=73.93 E-value=1 Score=38.76 Aligned_cols=14 Identities=21% Similarity=0.503 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCCc
Q 019152 70 EPLLQEVFSSTGPV 83 (345)
Q Consensus 70 ~~~l~~~f~~~G~v 83 (345)
..||+++++.-|.+
T Consensus 152 S~dlkdilseagtm 165 (423)
T PF02166_consen 152 SADLKDILSEAGTM 165 (423)
T ss_dssp --------------
T ss_pred cccccccccccccc
Confidence 45667776666544
No 226
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=73.71 E-value=23 Score=25.66 Aligned_cols=112 Identities=19% Similarity=0.206 Sum_probs=58.7
Q ss_pred CCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCC--ccCCCceEEeeccccCCC--CCCC
Q 019152 64 IHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGR--HLFGQPIKVNWAYASGQR--EDTS 139 (345)
Q Consensus 64 lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~--~~~g~~l~v~~~~~~~~~--~~~~ 139 (345)
||+.+ +.|.++|+.=|.|.+|-.+..-. +. .|+..++|. .++|. +.+.-....... ...+
T Consensus 11 lPPYT--nKLSDYfeSPGKI~svItvtqyp---------dn----dal~~~~G~lE~vDg~-i~IGs~q~~~sV~i~gTP 74 (145)
T TIGR02542 11 LPPYT--NKLSDYFESPGKIQSVITVTQYP---------DN----DALLYVHGTLEQVDGN-IRIGSGQTPASVRIQGTP 74 (145)
T ss_pred cCCcc--chhhHHhcCCCceEEEEEEeccC---------Cc----hhhheeeeehhhccCc-EEEccCCCcccEEEecCC
Confidence 77776 67899999999998875544322 11 233333342 23333 344322111100 0011
Q ss_pred CceeEEECCCCccCCHHHHHHHhcc---CCCcceeEeeecCCCCCcccEEEEEeCCH
Q 019152 140 GHFNIFVGDLSPEVTDATLFACFSV---YPSCSDARVMWDQKTGRSRGFGFVSFRNQ 193 (345)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~---~g~v~~~~~~~~~~~~~~~g~~fv~f~~~ 193 (345)
+.+++ .--|..++-.+++++|+. |..|.+-.+.+|--..-+-+.||.-|...
T Consensus 75 sgnnv--~F~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 75 SGNNV--IFPPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred CCCce--ecCceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 11111 112567889999999975 44555555554422223445788877655
No 227
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=71.97 E-value=4.3 Score=31.26 Aligned_cols=106 Identities=8% Similarity=-0.054 Sum_probs=68.5
Q ss_pred CCCHHHHHHHHhc-cCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccccCCCCCC---CCce
Q 019152 67 QVTEPLLQEVFSS-TGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDT---SGHF 142 (345)
Q Consensus 67 ~~t~~~l~~~f~~-~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~---~~~~ 142 (345)
..+-..|...+.. ++....+.+..- ..++..+.|.+.+++.+++. .....+.|..+.+..-.+....... ....
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~v 105 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFEHIPV 105 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccceeccch
Confidence 4556666666654 333323333222 33689999999999999985 3455667777777655433222111 1234
Q ss_pred eEEECCCCcc-CCHHHHHHHhccCCCcceeEee
Q 019152 143 NIFVGDLSPE-VTDATLFACFSVYPSCSDARVM 174 (345)
Q Consensus 143 ~l~v~~lp~~-~~~~~l~~~f~~~g~v~~~~~~ 174 (345)
-|.|.|||.. .+++-++.+.+.+|.+..+...
T Consensus 106 WVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 106 WVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred hhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 5778899977 6778889999999999887544
No 228
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=70.04 E-value=36 Score=25.48 Aligned_cols=71 Identities=13% Similarity=0.163 Sum_probs=49.8
Q ss_pred ceEEEcCCCcc---cCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeecc
Q 019152 263 TTVYVGNLAPE---VTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMC 339 (345)
Q Consensus 263 ~~l~V~nlp~~---~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~ 339 (345)
-.|.|.....+ .+-..+.+..+.-| +.+.++... .+...|.|++.++-.+|.+.|... .-.+-.+.+..+.
T Consensus 36 pavQIs~~~~g~~~~~~~~v~~~L~~~g-I~~ksi~~~--~~~~~irf~~~~~Ql~Ak~vL~~~---L~~~y~VAlnl~p 109 (127)
T PRK10629 36 STLAIRAVHQGASLPDGFYVYQHLDANG-IHIKSITPE--NDSLLIRFDSPEQSAAAKEVLDRT---LPHGYIIAQQDDN 109 (127)
T ss_pred ceEEEecCCCCCccchHHHHHHHHHHCC-CCcceEEee--CCEEEEEECCHHHHHHHHHHHHHH---cCCCCEEEEecCC
Confidence 45777766444 45677888899988 345554444 558999999999999999888876 3334456666554
No 229
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.52 E-value=11 Score=33.56 Aligned_cols=55 Identities=11% Similarity=0.037 Sum_probs=43.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCc-eEEEEeecCCCCeEEEEEeCHHHHHHHHH
Q 019152 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPV-EGCKLIRKDKSSYGFIHYFDRRSAAMAIL 112 (345)
Q Consensus 55 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v-~~v~~~~~~~~~~afv~f~~~~~A~~a~~ 112 (345)
-...|-|.++|.....+||...|+.|+.- -+|+.+.+. .||-.|.+...|..||.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt---halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT---HALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc---eeEEeecchHHHHHHhh
Confidence 35678999999988888888999988742 244444444 69999999999999984
No 230
>PRK11901 hypothetical protein; Reviewed
Probab=65.73 E-value=40 Score=29.54 Aligned_cols=60 Identities=13% Similarity=0.202 Sum_probs=39.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCC---eEE--EEEeCHHHHHHHHHHhCC
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSS---YGF--IHYFDRRSAAMAILSLNG 116 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~---~af--v~f~~~~~A~~a~~~l~~ 116 (345)
+...-+|-|.. ..+++.|..|.+.++ +..++++.....| |.. =.|.+.++|+.|+..|-.
T Consensus 242 p~~~YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 242 PASHYTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCCeEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCH
Confidence 34444555554 355888999998886 3556666543322 333 369999999999988743
No 231
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=65.26 E-value=11 Score=35.99 Aligned_cols=72 Identities=18% Similarity=0.164 Sum_probs=53.0
Q ss_pred eEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 019152 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (345)
Q Consensus 143 ~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v 215 (345)
+|++.+--...+..-+..++..++.+...+++.....+...+-++++|.....+..|.. |.++.+....+.+
T Consensus 513 ~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s-~p~k~fa~~~~ks 584 (681)
T KOG3702|consen 513 TIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKS-LPNKKFASKCLKS 584 (681)
T ss_pred ceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhc-cccccccccceec
Confidence 56666666666677778888888888888888777777777789999999988866654 5666665554443
No 232
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=64.53 E-value=30 Score=29.26 Aligned_cols=33 Identities=9% Similarity=0.184 Sum_probs=26.8
Q ss_pred eeEEECCCCccC------------CHHHHHHHhccCCCcceeEee
Q 019152 142 FNIFVGDLSPEV------------TDATLFACFSVYPSCSDARVM 174 (345)
Q Consensus 142 ~~l~v~~lp~~~------------~~~~l~~~f~~~g~v~~~~~~ 174 (345)
.++|+.+||-.| +++-|+..|+.||.|..|.++
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 489999998543 677899999999999887664
No 233
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=63.36 E-value=3.1 Score=42.77 Aligned_cols=14 Identities=7% Similarity=0.128 Sum_probs=6.5
Q ss_pred cceEEEeCCCCCCC
Q 019152 56 CRSVYVGNIHTQVT 69 (345)
Q Consensus 56 ~~~l~v~~lp~~~t 69 (345)
..++|--+.++..+
T Consensus 411 nqa~Y~~~a~~~sa 424 (1973)
T KOG4407|consen 411 NQALYAVGAGPSSA 424 (1973)
T ss_pred cchhhhcccCCchh
Confidence 33455555554443
No 234
>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]
Probab=63.31 E-value=3.4 Score=37.67 Aligned_cols=12 Identities=17% Similarity=0.266 Sum_probs=5.4
Q ss_pred EEECCCCccCCH
Q 019152 144 IFVGDLSPEVTD 155 (345)
Q Consensus 144 l~v~~lp~~~~~ 155 (345)
+-|-.|.++|.+
T Consensus 493 vKIHqlNK~Wrd 504 (775)
T KOG1151|consen 493 VKIHQLNKNWRD 504 (775)
T ss_pred Eeeehhccchhh
Confidence 334445555443
No 235
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.00 E-value=19 Score=32.20 Aligned_cols=55 Identities=18% Similarity=0.239 Sum_probs=45.8
Q ss_pred ceeEEECCCCccCCHHHHHHHhccCCC-cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHH
Q 019152 141 HFNIFVGDLSPEVTDATLFACFSVYPS-CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 202 (345)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 202 (345)
...|-|.++|...-.+||...|+.|+. -..|+++-|. .+|..|.+...|..|+..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhc
Confidence 468999999999999999999999965 4567777542 499999999999999963
No 236
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=61.94 E-value=14 Score=27.07 Aligned_cols=54 Identities=13% Similarity=0.239 Sum_probs=26.5
Q ss_pred eEEEcCCCcc---------cCHHHHHHHhhhcCceeeEEEeeeCC-cceEEEEeCCH-HHHHHHH
Q 019152 264 TVYVGNLAPE---------VTQLDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTH-AEAALAI 317 (345)
Q Consensus 264 ~l~V~nlp~~---------~t~~~L~~~f~~~G~~~i~~v~i~~~-~~~afV~f~~~-~~A~~Al 317 (345)
+++|-|++.. .+-+.|++.|+.|.+..+.-+--... .+++.|.|... ..-..|+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHH
Confidence 5677788553 35678999999998544333322222 68999999654 3444444
No 237
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=60.50 E-value=5.6 Score=33.48 Aligned_cols=76 Identities=17% Similarity=0.218 Sum_probs=46.6
Q ss_pred ceEEEcCCCcc------------cCHHHHHHHhhhcCceeeEEEeee--CC--------------cce---------EEE
Q 019152 263 TTVYVGNLAPE------------VTQLDLHRHFHSLGAGVIEEVRVQ--RD--------------KGF---------GFV 305 (345)
Q Consensus 263 ~~l~V~nlp~~------------~t~~~L~~~f~~~G~~~i~~v~i~--~~--------------~~~---------afV 305 (345)
.||++.+||-. .++..|+..|+.|| .|..|.|+ .+ +|+ |||
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg--~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayv 227 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFG--EIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYV 227 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhc--cceecCCcccchhHHHhcCccccceeeccccCcchhHHHHH
Confidence 57888888753 25677999999999 56665553 11 233 446
Q ss_pred EeCCHHHHHHHHHhhCCCCccc-cCC----ceEEEeeccc
Q 019152 306 RYSTHAEAALAIQMGNTTQSSY-LFG----KQMKHDAMCG 340 (345)
Q Consensus 306 ~f~~~~~A~~Al~~l~~~~~~~-~~g----~~l~v~~~~~ 340 (345)
.|.....-..|+..|.|..+.. ..| -.++|.|.+.
T Consensus 228 qfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrs 267 (445)
T KOG2891|consen 228 QFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRS 267 (445)
T ss_pred HHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchh
Confidence 6666666667777777763222 222 3566666543
No 238
>PRK10927 essential cell division protein FtsN; Provisional
Probab=59.42 E-value=52 Score=28.71 Aligned_cols=62 Identities=8% Similarity=0.014 Sum_probs=39.8
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEE---EEeCHHHHHHHHHHhCCCccCC
Q 019152 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFI---HYFDRRSAAMAILSLNGRHLFG 121 (345)
Q Consensus 56 ~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv---~f~~~~~A~~a~~~l~~~~~~g 121 (345)
.-.|-+|-+.....-+.|+.-+..-|--..|. ...++--| =|.+.++|.+++..|.+.-+.|
T Consensus 247 ~~~VQvGSF~n~~nAE~LrAkLa~~G~~A~I~----~~g~~~RVrVGPf~sr~eAe~a~~rLk~aGis~ 311 (319)
T PRK10927 247 RWMVQCGSFRGAEQAETVRAQLAFEGFDSKIT----TNNGWNRVVIGPVKGKENADSTLNRLKMAGHTN 311 (319)
T ss_pred cEEEEeCccCCHHHHHHHHHHHHHcCCeeEEc----cCCcEEEEEeCCCCCHHHHHHHHHHHHHCCCCc
Confidence 34566777766666777888888777444442 11122222 3789999999998887665544
No 239
>KOG3982 consensus Runt and related transcription factors [Transcription]
Probab=58.98 E-value=18 Score=31.90 Aligned_cols=11 Identities=9% Similarity=0.030 Sum_probs=7.3
Q ss_pred HHHHHHHHhcc
Q 019152 70 EPLLQEVFSST 80 (345)
Q Consensus 70 ~~~l~~~f~~~ 80 (345)
+..|.+++..+
T Consensus 98 ~rt~~~~laeh 108 (475)
T KOG3982|consen 98 FRTVVEFLAEH 108 (475)
T ss_pred HHHHHHHHHhC
Confidence 45677777765
No 240
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=56.86 E-value=23 Score=22.55 Aligned_cols=22 Identities=18% Similarity=0.270 Sum_probs=16.5
Q ss_pred HHHHHHhhhcCceeeEEEeeeC
Q 019152 277 LDLHRHFHSLGAGVIEEVRVQR 298 (345)
Q Consensus 277 ~~L~~~f~~~G~~~i~~v~i~~ 298 (345)
.+|+++|+..|.+.+..+....
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~e 30 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPYE 30 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcccc
Confidence 5799999999966666665543
No 241
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=55.77 E-value=51 Score=22.60 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=43.1
Q ss_pred EEEeCCCCCCCHHHHHHHHhc-cC-CceEEEEeecCC-CCeEEEEEeCHHHHHHHHHHh
Q 019152 59 VYVGNIHTQVTEPLLQEVFSS-TG-PVEGCKLIRKDK-SSYGFIHYFDRRSAAMAILSL 114 (345)
Q Consensus 59 l~v~~lp~~~t~~~l~~~f~~-~G-~v~~v~~~~~~~-~~~afv~f~~~~~A~~a~~~l 114 (345)
-|.--++...+..+|++.++. || .|.+|.....+. ..-|||.+.....|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 566668899999999999987 66 577776665443 246999999999998876554
No 242
>PF14893 PNMA: PNMA
Probab=54.67 E-value=9 Score=33.89 Aligned_cols=53 Identities=15% Similarity=0.288 Sum_probs=34.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhc----cCCce--EEEEeecCCCCeEEEEEeCHHH
Q 019152 54 STCRSVYVGNIHTQVTEPLLQEVFSS----TGPVE--GCKLIRKDKSSYGFIHYFDRRS 106 (345)
Q Consensus 54 ~~~~~l~v~~lp~~~t~~~l~~~f~~----~G~v~--~v~~~~~~~~~~afv~f~~~~~ 106 (345)
...+.|.|.|||.++++++|.+.+.. .|... .-...++.+...|+|+|...-+
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n 74 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVN 74 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccc
Confidence 34577999999999999999887763 45321 1111222334578888866543
No 243
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=52.53 E-value=20 Score=26.39 Aligned_cols=49 Identities=14% Similarity=0.271 Sum_probs=27.1
Q ss_pred eEEEeCCCCC---------CCHHHHHHHHhccCCceEEEEeecCC--CCeEEEEEeCHHHH
Q 019152 58 SVYVGNIHTQ---------VTEPLLQEVFSSTGPVEGCKLIRKDK--SSYGFIHYFDRRSA 107 (345)
Q Consensus 58 ~l~v~~lp~~---------~t~~~l~~~f~~~G~v~~v~~~~~~~--~~~afv~f~~~~~A 107 (345)
++.|-|++.. .+.++|.+.|+.|.++. ++.+.... +|++.|.|.+.-+-
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWSG 69 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChHH
Confidence 4667777543 35688999999999884 55555543 68999999876553
No 244
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=51.44 E-value=48 Score=22.76 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=41.4
Q ss_pred EEEcCCCcccCHHHHHHHhhh-cCceeeEEEeeeC---CcceEEEEeCCHHHHHHHHHh
Q 019152 265 VYVGNLAPEVTQLDLHRHFHS-LGAGVIEEVRVQR---DKGFGFVRYSTHAEAALAIQM 319 (345)
Q Consensus 265 l~V~nlp~~~t~~~L~~~f~~-~G~~~i~~v~i~~---~~~~afV~f~~~~~A~~Al~~ 319 (345)
-|...++...+..+|+..++. || +.+..|+... +..-|||++..-..|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~-VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFD-VKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhC-CceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 445568889999999999986 66 5778776653 356799999998888876544
No 245
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=50.55 E-value=39 Score=26.85 Aligned_cols=77 Identities=18% Similarity=0.188 Sum_probs=51.7
Q ss_pred eEEECCCCccCC-----HHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe-eEEEE
Q 019152 143 NIFVGDLSPEVT-----DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR-QIRCN 216 (345)
Q Consensus 143 ~l~v~~lp~~~~-----~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~-~i~v~ 216 (345)
.+.+.+++..+- ......+|..|-......+++ +.+..-|.|.+.+.|..|...++...|.|. .+..-
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 455556654432 224455666665555555553 344678899999999999999999999887 77777
Q ss_pred eccCCCCCC
Q 019152 217 WATKGAGNN 225 (345)
Q Consensus 217 ~~~~~~~~~ 225 (345)
++.......
T Consensus 86 faQ~~~~~~ 94 (193)
T KOG4019|consen 86 FAQPGHPES 94 (193)
T ss_pred EccCCCccc
Confidence 776655443
No 246
>PF03249 TSA: Type specific antigen; InterPro: IPR004933 There are several antigenic variants in Rickettsia tsutsugamushi, and a type-specific antigen (TSA) of 56-kilodaltons located on the rickettsial surface is responsible for the variation [, ]. TSA proteins are probably integral membrane proteins. ; GO: 0016021 integral to membrane
Probab=49.74 E-value=9.7 Score=33.60 Aligned_cols=10 Identities=0% Similarity=0.298 Sum_probs=5.5
Q ss_pred HHHHHHHHhc
Q 019152 70 EPLLQEVFSS 79 (345)
Q Consensus 70 ~~~l~~~f~~ 79 (345)
.+.|..+++.
T Consensus 341 n~qi~qlykd 350 (503)
T PF03249_consen 341 NEQIIQLYKD 350 (503)
T ss_pred cHHHHHHHHH
Confidence 3556666554
No 247
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=49.73 E-value=15 Score=28.16 Aligned_cols=82 Identities=13% Similarity=0.004 Sum_probs=51.3
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcc
Q 019152 184 GFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYT 263 (345)
Q Consensus 184 g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (345)
++..++|.+.+++.+++. .....+++..+.+..-.+......... .....
T Consensus 56 ~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~-----------------------------~~~~v 105 (153)
T PF14111_consen 56 NLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKF-----------------------------EHIPV 105 (153)
T ss_pred CeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccccce-----------------------------eccch
Confidence 578999999999999887 344566776666643322111000000 00002
Q ss_pred eEEEcCCCccc-CHHHHHHHhhhcCceeeEEEeee
Q 019152 264 TVYVGNLAPEV-TQLDLHRHFHSLGAGVIEEVRVQ 297 (345)
Q Consensus 264 ~l~V~nlp~~~-t~~~L~~~f~~~G~~~i~~v~i~ 297 (345)
=|.|.|||... +++-|+.+.+.+| .+..+...
T Consensus 106 WVri~glP~~~~~~~~~~~i~~~iG--~~i~vD~~ 138 (153)
T PF14111_consen 106 WVRIYGLPLHLWSEEILKAIGSKIG--EPIEVDEN 138 (153)
T ss_pred hhhhccCCHHHhhhHHHHHHHHhcC--CeEEEEcC
Confidence 36778999975 6777889999999 66666544
No 248
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=48.49 E-value=82 Score=21.20 Aligned_cols=56 Identities=9% Similarity=0.073 Sum_probs=42.1
Q ss_pred EEEeCCCCCCCHHHHHHHHhc-cC-CceEEEEeecCC-CCeEEEEEeCHHHHHHHHHHh
Q 019152 59 VYVGNIHTQVTEPLLQEVFSS-TG-PVEGCKLIRKDK-SSYGFIHYFDRRSAAMAILSL 114 (345)
Q Consensus 59 l~v~~lp~~~t~~~l~~~f~~-~G-~v~~v~~~~~~~-~~~afv~f~~~~~A~~a~~~l 114 (345)
-|+-.++.+.+..+|++.++. || .|.+|....-+. -.-|||.+.....|...-..+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 567778999999999999987 66 566666655432 246999999998888775443
No 249
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=47.34 E-value=41 Score=29.70 Aligned_cols=57 Identities=28% Similarity=0.254 Sum_probs=38.3
Q ss_pred EEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceE
Q 019152 186 GFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTV 265 (345)
Q Consensus 186 ~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 265 (345)
|||.|++..+|..|.+.+.... ++.+.+..+.. .+.|
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APe-----------------------------------------P~DI 37 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPE-----------------------------------------PDDI 37 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCC-----------------------------------------cccc
Confidence 6999999999999998554332 23334444322 1458
Q ss_pred EEcCCCcccCHHHHHHHhhh
Q 019152 266 YVGNLAPEVTQLDLHRHFHS 285 (345)
Q Consensus 266 ~V~nlp~~~t~~~L~~~f~~ 285 (345)
...||..+..+..++..+..
T Consensus 38 ~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 38 IWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred cccccCCChHHHHHHHHHHH
Confidence 88999777777667665543
No 250
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=46.95 E-value=66 Score=21.64 Aligned_cols=54 Identities=13% Similarity=0.085 Sum_probs=40.7
Q ss_pred EEEcCCCcccCHHHHHHHhhh-cCceeeEEEeeeC---CcceEEEEeCCHHHHHHHHHh
Q 019152 265 VYVGNLAPEVTQLDLHRHFHS-LGAGVIEEVRVQR---DKGFGFVRYSTHAEAALAIQM 319 (345)
Q Consensus 265 l~V~nlp~~~t~~~L~~~f~~-~G~~~i~~v~i~~---~~~~afV~f~~~~~A~~Al~~ 319 (345)
-|+..++...+..+|+..++. || +.+..|+... +..-|||++..-..|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~-VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFD-VKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhC-CceEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 455678999999999999986 56 5777776543 356799999888888775443
No 251
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=45.15 E-value=27 Score=31.15 Aligned_cols=64 Identities=17% Similarity=0.150 Sum_probs=46.1
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccCC-ceEEEEeec-C-----CCCeEEEEEeCHHHHHHHHHHhCCCcc
Q 019152 56 CRSVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRK-D-----KSSYGFIHYFDRRSAAMAILSLNGRHL 119 (345)
Q Consensus 56 ~~~l~v~~lp~~~t~~~l~~~f~~~G~-v~~v~~~~~-~-----~~~~afv~f~~~~~A~~a~~~l~~~~~ 119 (345)
...|.|..||+..++.++.+-...+-. +....+... . ..+.|||.|...++........+|..+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 456899999999999999988887653 222222211 1 136789999999998888777777655
No 252
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=44.93 E-value=42 Score=21.92 Aligned_cols=62 Identities=11% Similarity=0.110 Sum_probs=43.1
Q ss_pred HHHHHHhccCC-CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 019152 156 ATLFACFSVYP-SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (345)
Q Consensus 156 ~~l~~~f~~~g-~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 220 (345)
++|.+.|...| .|..+.-+..+.++.+....||+.+...+... .++-+.+++..+.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCC
Confidence 46777777777 47777777666667777788888887655333 3455667888888886543
No 253
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=44.20 E-value=4.7 Score=37.50 Aligned_cols=69 Identities=14% Similarity=0.079 Sum_probs=52.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCc
Q 019152 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQP 123 (345)
Q Consensus 55 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~ 123 (345)
..++|+++|++++++-.+|..+|+.+--+..+.+.... -...++|.|.-.-.-..|+.+||+..+....
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 45679999999999999999999988766555443321 1247889998888888888888887765443
No 254
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=42.25 E-value=55 Score=28.86 Aligned_cols=56 Identities=20% Similarity=0.214 Sum_probs=36.8
Q ss_pred EEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccccCCCCCCCCceeEEECCCCccCCHHHHHHHhc
Q 019152 97 GFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFS 163 (345)
Q Consensus 97 afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~ 163 (345)
|||.|.+..+|..|++.+.... ++.+++..+.++. .+.=.||..+..+..++.++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~---------DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPD---------DIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcc---------cccccccCCChHHHHHHHHHH
Confidence 7999999999999998654433 3455666665443 455567766555555555544
No 255
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.90 E-value=15 Score=34.81 Aligned_cols=10 Identities=10% Similarity=0.145 Sum_probs=4.4
Q ss_pred CCCcceEEEe
Q 019152 53 PSTCRSVYVG 62 (345)
Q Consensus 53 ~~~~~~l~v~ 62 (345)
+.+...|++-
T Consensus 230 ~vP~pvi~~p 239 (728)
T KOG4592|consen 230 RVPPPVIYLP 239 (728)
T ss_pred CCCCCccccc
Confidence 3344445544
No 256
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=41.24 E-value=41 Score=22.00 Aligned_cols=61 Identities=11% Similarity=0.067 Sum_probs=41.7
Q ss_pred HHHHHHhccCC-CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 019152 156 ATLFACFSVYP-SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (345)
Q Consensus 156 ~~l~~~f~~~g-~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 219 (345)
++|.+.|...| .+..+.-+..+.++.+...-+|+.....+-.. .++-+.+++.++.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46777888887 47777777666666667777888776543322 355567789998887643
No 257
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=40.86 E-value=1.1e+02 Score=20.38 Aligned_cols=43 Identities=21% Similarity=0.167 Sum_probs=30.6
Q ss_pred HHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHh
Q 019152 71 PLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSL 114 (345)
Q Consensus 71 ~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l 114 (345)
.++.+.+..+| +....+.-....++.|+-+.+.+.+.++...+
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHH
Confidence 56777788888 44455544433568888888999988887765
No 258
>PF14893 PNMA: PNMA
Probab=39.92 E-value=21 Score=31.58 Aligned_cols=48 Identities=10% Similarity=0.241 Sum_probs=32.0
Q ss_pred ceEEEcCCCcccCHHHHHHHhh----hcCceeeEEEeeeCC--cceEEEEeCCH
Q 019152 263 TTVYVGNLAPEVTQLDLHRHFH----SLGAGVIEEVRVQRD--KGFGFVRYSTH 310 (345)
Q Consensus 263 ~~l~V~nlp~~~t~~~L~~~f~----~~G~~~i~~v~i~~~--~~~afV~f~~~ 310 (345)
+.|.|.+||.++++.+|.+.+. ..|...|..-.+.+. ...|+|+|...
T Consensus 19 r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~ 72 (331)
T PF14893_consen 19 RALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAED 72 (331)
T ss_pred hhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccc
Confidence 6799999999999998887654 556434444333332 34577777543
No 259
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=39.84 E-value=92 Score=19.32 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=40.9
Q ss_pred eEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCH----HHHHHHHHh
Q 019152 264 TVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTH----AEAALAIQM 319 (345)
Q Consensus 264 ~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~----~~A~~Al~~ 319 (345)
|+.|.||.-.--...|...+...- .|.++.+....+.+-|.|... +...++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~--GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLP--GVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTST--TEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCC--CCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH
Confidence 577888888777888888888774 488999998889999999754 444555543
No 260
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=37.64 E-value=77 Score=22.12 Aligned_cols=52 Identities=13% Similarity=0.185 Sum_probs=37.6
Q ss_pred CCCcccCHHHHHHHhhhcCceeeEEEeeeCC--cceEEEEeCCHHHHHHHHHhhC
Q 019152 269 NLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD--KGFGFVRYSTHAEAALAIQMGN 321 (345)
Q Consensus 269 nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~--~~~afV~f~~~~~A~~Al~~l~ 321 (345)
.+-+.++...|..-|.--| -+-.-..+.+| +..|.|.|.+.+.+..|.+.|.
T Consensus 19 S~~p~l~~~~i~~Q~~~~g-kk~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 19 SQTPNLDNNQILKQFPFPG-KKNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred ecCcccChhHHHHhccCCC-cccCCchhccccceEeEEEECCChHHHHHHHHHHH
Confidence 4556667777776666555 23344455566 7899999999999999998775
No 261
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=37.55 E-value=38 Score=30.29 Aligned_cols=60 Identities=10% Similarity=0.118 Sum_probs=45.2
Q ss_pred ceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC--------cceEEEEeCCHHHHHHHHHhhCCC
Q 019152 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD--------KGFGFVRYSTHAEAALAIQMGNTT 323 (345)
Q Consensus 263 ~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~--------~~~afV~f~~~~~A~~Al~~l~~~ 323 (345)
+.+.|.+||...+.+++.+-..++- ..+.+..+.+. .+.|||.|.+..+...-...++|+
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~-~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ 75 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFP-EHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGY 75 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCc-cccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCce
Confidence 5689999999999999988877764 24444444421 477999999999877666777776
No 262
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=36.03 E-value=1.5e+02 Score=20.59 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=34.2
Q ss_pred HHHHHHHHhccC-CceEEEEeecCCCCeEEEEEeCHHHHHHHHHHh
Q 019152 70 EPLLQEVFSSTG-PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSL 114 (345)
Q Consensus 70 ~~~l~~~f~~~G-~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l 114 (345)
.+.++++++..| .+.++......---...+++.|.+.|.++...+
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHH
Confidence 456778888877 688887776665567788999999988876554
No 263
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=35.38 E-value=5.3 Score=37.14 Aligned_cols=68 Identities=15% Similarity=0.134 Sum_probs=50.9
Q ss_pred eeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 019152 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (345)
Q Consensus 142 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~ 209 (345)
+.+++.|++++.+-++|..+|+.+..+..+.+...........+++|.|+..-....|+-+|++..+.
T Consensus 232 ~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 232 CSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 57899999999999999999998866665544322222344556889999888888888888876654
No 264
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=33.19 E-value=1.5e+02 Score=19.69 Aligned_cols=42 Identities=10% Similarity=0.003 Sum_probs=32.7
Q ss_pred HHHHHHhhhcCceeeEEEeeeCC--cceEEEEeCCHHHHHHHHHhhC
Q 019152 277 LDLHRHFHSLGAGVIEEVRVQRD--KGFGFVRYSTHAEAALAIQMGN 321 (345)
Q Consensus 277 ~~L~~~f~~~G~~~i~~v~i~~~--~~~afV~f~~~~~A~~Al~~l~ 321 (345)
.++++.+..+| +....+.-. -++.|+-+++.+.+.++.+.+.
T Consensus 37 ~~~~~~~~~~G---a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG---ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT---ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC---CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 56777888888 556666666 7788889989999998887764
No 265
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=31.62 E-value=24 Score=31.06 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=42.1
Q ss_pred CHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCC
Q 019152 69 TEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGR 117 (345)
Q Consensus 69 t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~ 117 (345)
+...|.+++.+.|.|..-.+.+--+-|.+||-.-.++++.+++..|.+.
T Consensus 274 ~~p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 274 PPPPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CCcHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 3578899999999988777777778899999999999999999988764
No 266
>PF15053 Njmu-R1: Mjmu-R1-like protein family
Probab=31.58 E-value=2.9e+02 Score=24.63 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=33.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHH----------hccCCceEEEEeecCC-CCeEEEEEe
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVF----------SSTGPVEGCKLIRKDK-SSYGFIHYF 102 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f----------~~~G~v~~v~~~~~~~-~~~afv~f~ 102 (345)
..-+.+|.-+|||... |.+|+.+. ...|.|.+|.+..... .|+.|.-|.
T Consensus 34 ~dfSLSlv~TnLp~E~-E~eLRsfiakrlskgal~~G~GnVasvel~~pe~~~gcYyCL~q 93 (353)
T PF15053_consen 34 DDFSLSLVDTNLPSEA-EPELRSFIAKRLSKGALFEGMGNVASVELSIPESRVGCYYCLLQ 93 (353)
T ss_pred CcceeeeeecCCCccc-cHHHHHHHHHHHhccccccCCCceeeEeecCCCcceeEEEEeee
Confidence 4557889999999876 67777654 4468899888865444 344444443
No 267
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=30.59 E-value=3.2e+02 Score=24.93 Aligned_cols=40 Identities=25% Similarity=0.366 Sum_probs=29.4
Q ss_pred CCCCCcceEEEcCCCc-ccCHHHHHHHhh---hcCceeeEEEeee
Q 019152 257 ENNPQYTTVYVGNLAP-EVTQLDLHRHFH---SLGAGVIEEVRVQ 297 (345)
Q Consensus 257 ~~~~~~~~l~V~nlp~-~~t~~~L~~~f~---~~G~~~i~~v~i~ 297 (345)
..+.+.+.|-|-||.+ .+...+|..+|+ ++| +.+..|.|.
T Consensus 141 e~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~g-gkl~kV~iy 184 (622)
T COG5638 141 EEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYG-GKLSKVKIY 184 (622)
T ss_pred CCCCcccceeEeecccccchHHHHHHHHHhhCCCC-CccceeEec
Confidence 3355667899999998 578888988877 555 377777764
No 268
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=30.00 E-value=90 Score=21.28 Aligned_cols=34 Identities=9% Similarity=0.088 Sum_probs=23.1
Q ss_pred CceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCC
Q 019152 82 PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNG 116 (345)
Q Consensus 82 ~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~ 116 (345)
.|.++ +.++.-+||-||+=.+..++..|+..+.+
T Consensus 33 ~I~Si-~~~~~lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 33 NIYSI-FAPDSLKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp ---EE-EE-TTSTSEEEEEESSHHHHHHHHTT-TT
T ss_pred ceEEE-EEeCCCceEEEEEeCCHHHHHHHHhcccc
Confidence 34444 34455789999999999999999876544
No 269
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=29.48 E-value=30 Score=31.05 Aligned_cols=60 Identities=23% Similarity=0.204 Sum_probs=47.2
Q ss_pred eeEEECCCCccCCH--------HHHHHHhcc--CCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 019152 142 FNIFVGDLSPEVTD--------ATLFACFSV--YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 201 (345)
Q Consensus 142 ~~l~v~~lp~~~~~--------~~l~~~f~~--~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 201 (345)
+.+|+.+.+..... +++...|.. .+....+...++......+|..|++|+..+.+.+...
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 56777777765444 488999988 5677778877776677888999999999999888774
No 270
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=29.05 E-value=1.2e+02 Score=20.67 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=24.5
Q ss_pred eeEEEeeeCC-cceEEEEeCCHHHHHHHHHhhCCC
Q 019152 290 VIEEVRVQRD-KGFGFVRYSTHAEAALAIQMGNTT 323 (345)
Q Consensus 290 ~i~~v~i~~~-~~~afV~f~~~~~A~~Al~~l~~~ 323 (345)
.|.++....+ +|+.||+=.+.++...|++.+.+-
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 5777776665 899999999999999999777654
No 271
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=27.79 E-value=84 Score=24.96 Aligned_cols=54 Identities=19% Similarity=0.081 Sum_probs=35.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC-----CCeEEEEEeCHHHHHHHHHH
Q 019152 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-----SSYGFIHYFDRRSAAMAILS 113 (345)
Q Consensus 56 ~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~-----~~~afv~f~~~~~A~~a~~~ 113 (345)
.+++|.. +.+..-++|..+-+ |.+..|.+.+... +|-.||.|.+.+.|..++..
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 3456655 33333344444444 7888888765432 47889999999999988754
No 272
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=26.93 E-value=1.7e+02 Score=18.44 Aligned_cols=45 Identities=13% Similarity=0.108 Sum_probs=29.8
Q ss_pred CHHHHHHHHhccC-CceEEEEeecCCCCeEEEEEeCHHHHHHHHHH
Q 019152 69 TEPLLQEVFSSTG-PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILS 113 (345)
Q Consensus 69 t~~~l~~~f~~~G-~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~ 113 (345)
.-.++-+.|...| .|.++........+..-+.+.+.+.|.+++..
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~ 59 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKE 59 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHH
Confidence 3477888888877 67777765554444445566666677777654
No 273
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=26.66 E-value=4.6e+02 Score=23.32 Aligned_cols=118 Identities=10% Similarity=0.092 Sum_probs=68.7
Q ss_pred ceEEEeCCCCCCCHHHHHH-----------HHhccC-CceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCce
Q 019152 57 RSVYVGNIHTQVTEPLLQE-----------VFSSTG-PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPI 124 (345)
Q Consensus 57 ~~l~v~~lp~~~t~~~l~~-----------~f~~~G-~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l 124 (345)
++-.+-|+.+--|..+|+- +.+.|| ..++|.++.+... -.+.-.+...-++|+..|-..--.|-.|
T Consensus 64 rrAvLiGINY~gTk~ELrGCINDv~~M~~~Lv~rfGFs~ddI~~LtDt~~--s~~~~PT~~Nir~Al~wLV~~aq~gD~L 141 (362)
T KOG1546|consen 64 RRAVLIGINYPGTKNELRGCINDVHRMRKLLVERFGFSEDDILMLTDTDE--SPVRIPTGKNIRRALRWLVESAQPGDSL 141 (362)
T ss_pred ceEEEEeecCCCcHHHHhhhHHHHHHHHHHHHHhhCCChhheEEEecCCC--cccccCcHHHHHHHHHHHHhcCCCCCEE
Confidence 3345556888888877753 346788 6778888876542 2334466777788887775555566778
Q ss_pred EEeeccccCCC----CCCCCceeEEECCCCcc-----CCHHHHHHHhccCCCcceeEeeec
Q 019152 125 KVNWAYASGQR----EDTSGHFNIFVGDLSPE-----VTDATLFACFSVYPSCSDARVMWD 176 (345)
Q Consensus 125 ~v~~~~~~~~~----~~~~~~~~l~v~~lp~~-----~~~~~l~~~f~~~g~v~~~~~~~~ 176 (345)
.++|+--.... .+.....-=.|--++.+ ++.++.+.+.++...-..+.++.|
T Consensus 142 vfHYSGHGtr~~~~~gDe~dG~DE~I~P~D~~t~G~iIdDe~~r~lV~plp~G~~lt~I~D 202 (362)
T KOG1546|consen 142 VFHYSGHGTRQPDTNGDEVDGYDETIVPCDHNTQGPIIDDEIFRILVRPLPKGCKLTAISD 202 (362)
T ss_pred EEEecCCCCcCCCCCCCCCCCCcceeecccccccccccchHHHHHHHhccCCCceEEEEee
Confidence 88887433221 11111111222233333 457777788787655445555544
No 274
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=26.22 E-value=67 Score=26.72 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=24.4
Q ss_pred cceEEEcCCCcccCHHHHHHHhhhcC
Q 019152 262 YTTVYVGNLAPEVTQLDLHRHFHSLG 287 (345)
Q Consensus 262 ~~~l~V~nlp~~~t~~~L~~~f~~~G 287 (345)
..+||+-|+|...|++.|..+.+.+|
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg 65 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLG 65 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhh
Confidence 37899999999999999999999998
No 275
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=25.56 E-value=67 Score=18.00 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=14.8
Q ss_pred CCCHHHHHHHHhccCCc
Q 019152 67 QVTEPLLQEVFSSTGPV 83 (345)
Q Consensus 67 ~~t~~~l~~~f~~~G~v 83 (345)
.+++++|++.+..+|.+
T Consensus 3 tWs~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 57899999999999865
No 276
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=25.54 E-value=2.4e+02 Score=20.24 Aligned_cols=42 Identities=12% Similarity=0.133 Sum_probs=29.7
Q ss_pred HHHHHHHhhhcCceeeEEEeeeC--CcceEEEEeCCHHHHHHHHH
Q 019152 276 QLDLHRHFHSLGAGVIEEVRVQR--DKGFGFVRYSTHAEAALAIQ 318 (345)
Q Consensus 276 ~~~L~~~f~~~G~~~i~~v~i~~--~~~~afV~f~~~~~A~~Al~ 318 (345)
..+|.++.+.+| +.--+|.+.. +.-||++++.|.++...++.
T Consensus 26 WPE~~a~lk~ag-i~nYSIfLde~~n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 26 WPELLALLKEAG-IRNYSIFLDEEENLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred cHHHHHHHHHcC-CceeEEEecCCcccEEEEEEEcChHHHHHHHh
Confidence 357888999999 2444555555 46789999997776666553
No 277
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=24.97 E-value=1.1e+02 Score=20.04 Aligned_cols=23 Identities=9% Similarity=0.206 Sum_probs=19.9
Q ss_pred ceEEEEeCCHHHHHHHHHhhCCC
Q 019152 301 GFGFVRYSTHAEAALAIQMGNTT 323 (345)
Q Consensus 301 ~~afV~f~~~~~A~~Al~~l~~~ 323 (345)
...+|.|.+..+|.+|-+.|...
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~ 24 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKN 24 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHC
Confidence 46789999999999999888766
No 278
>PRK11901 hypothetical protein; Reviewed
Probab=24.90 E-value=2.3e+02 Score=25.02 Aligned_cols=58 Identities=19% Similarity=0.106 Sum_probs=35.0
Q ss_pred ceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEE----EeCCHHHHHHHHHhhCCC
Q 019152 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFV----RYSTHAEAALAIQMGNTT 323 (345)
Q Consensus 263 ~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV----~f~~~~~A~~Al~~l~~~ 323 (345)
.+|-|..+ .+++.|..|.++++-..+....-.++..-.|| .|.+.++|..|+..|-..
T Consensus 246 YTLQL~Aa---s~~~~L~~f~~~~~L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 246 YTLQLSSA---SRSDTLNAYAKKQNLSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred eEEEeecC---CCHHHHHHHHHHcCcCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHH
Confidence 45655443 45777888888876212222222233223343 699999999999988543
No 279
>PHA01632 hypothetical protein
Probab=24.52 E-value=78 Score=19.54 Aligned_cols=21 Identities=10% Similarity=0.284 Sum_probs=17.0
Q ss_pred EEEcCCCcccCHHHHHHHhhh
Q 019152 265 VYVGNLAPEVTQLDLHRHFHS 285 (345)
Q Consensus 265 l~V~nlp~~~t~~~L~~~f~~ 285 (345)
|.|..+|...|+++|+..+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 556788999999999987653
No 280
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=24.46 E-value=34 Score=30.77 Aligned_cols=56 Identities=27% Similarity=0.303 Sum_probs=42.4
Q ss_pred ceEEEcCCCcccC--------HHHHHHHhhhcCceeeEEEeeeCC------cceEEEEeCCHHHHHHHHH
Q 019152 263 TTVYVGNLAPEVT--------QLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQ 318 (345)
Q Consensus 263 ~~l~V~nlp~~~t--------~~~L~~~f~~~G~~~i~~v~i~~~------~~~afV~f~~~~~A~~Al~ 318 (345)
+.+|+.+++.... .+++...|.++|...+..+...++ +|..|++|.....|.+.+.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 5677777766543 358999999955447777777665 6889999999999999874
No 281
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=24.30 E-value=2.2e+02 Score=18.83 Aligned_cols=40 Identities=15% Similarity=0.221 Sum_probs=27.3
Q ss_pred HHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCcc
Q 019152 75 EVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHL 119 (345)
Q Consensus 75 ~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~ 119 (345)
.-+..||.|.-+ .+...|+ |-|.+.+++...++.|....+
T Consensus 15 r~L~kfG~i~Y~----Skk~kYv-vlYvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 15 RQLRKFGDIHYV----SKKMKYV-VLYVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred HhHhhcccEEEE----ECCccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 356789988644 2333455 458899999999988876543
No 282
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=22.40 E-value=3.4e+02 Score=20.31 Aligned_cols=70 Identities=11% Similarity=0.062 Sum_probs=46.5
Q ss_pred ceEEEeCCCCC---CCHHHHHHHHhccC-CceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecc
Q 019152 57 RSVYVGNIHTQ---VTEPLLQEVFSSTG-PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (345)
Q Consensus 57 ~~l~v~~lp~~---~t~~~l~~~f~~~G-~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (345)
..|.|++.... .+...+.+.++.-| .+.++.... +...|.|.+.++-.+|.+.|....-.+..+.++.+.
T Consensus 36 pavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~----~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 36 STLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEN----DSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred ceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeC----CEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 34777766444 56788899999887 455554422 258999999999888887775544444455555443
No 283
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=21.88 E-value=3e+02 Score=19.54 Aligned_cols=58 Identities=9% Similarity=0.210 Sum_probs=40.3
Q ss_pred ceEEEcCCCccc---CHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCC
Q 019152 263 TTVYVGNLAPEV---TQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 323 (345)
Q Consensus 263 ~~l~V~nlp~~~---t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~ 323 (345)
-.|.|.....+. +...+...++.-| +.+.++. ...+...|.|++.++=.+|.+.|...
T Consensus 32 pAvqIs~~~~~~~~~~~~~v~~~L~~~~-I~~k~i~--~~~~~llirf~~~~~Ql~Ak~~L~~~ 92 (101)
T PF13721_consen 32 PAVQISASSAGVQLPDAFQVEQALKAAG-IAVKSIE--QEGDSLLIRFDSTDQQLKAKDVLSKA 92 (101)
T ss_pred CcEEEecCCCCccCChHHHHHHHHHHCC-CCcceEE--eeCCEEEEEECCHHHHHHHHHHHHHH
Confidence 356666643322 1357889999988 3444444 45678999999999988888887754
No 284
>PRK02302 hypothetical protein; Provisional
Probab=21.27 E-value=2.8e+02 Score=19.31 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=27.1
Q ss_pred HHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCcc
Q 019152 75 EVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHL 119 (345)
Q Consensus 75 ~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~ 119 (345)
..+.+||.|.-+ .+...|+ |-|.+.++|+..++.|....+
T Consensus 21 r~LrkfG~I~Y~----Skk~kYv-vlYvn~~~~e~~~~kl~~l~f 60 (89)
T PRK02302 21 RKLSKYGDIVYH----SKRSRYL-VLYVNKEDVEQKLEELSKLKF 60 (89)
T ss_pred HHHhhcCcEEEE----eccccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 345779988644 2333344 558899999999988866543
No 285
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=20.67 E-value=1.5e+02 Score=25.37 Aligned_cols=45 Identities=11% Similarity=0.217 Sum_probs=32.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHH
Q 019152 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILS 113 (345)
Q Consensus 57 ~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~ 113 (345)
....|+|||+++|..-+..+++.--.+. ..|-+...|-|++-...
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~------------~~v~M~QkEva~Rl~A~ 140 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQ------------DMVLMVQKEVAERLVAK 140 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccc------------eEEEEeHHHHHHHHhCC
Confidence 3478999999999999999998654442 33444566777776643
No 286
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=20.66 E-value=2.1e+02 Score=17.17 Aligned_cols=42 Identities=10% Similarity=0.154 Sum_probs=28.8
Q ss_pred HHHHHHHHhccC-CceEEEEeecC-CCCeEEEEEeCHHHHHHHH
Q 019152 70 EPLLQEVFSSTG-PVEGCKLIRKD-KSSYGFIHYFDRRSAAMAI 111 (345)
Q Consensus 70 ~~~l~~~f~~~G-~v~~v~~~~~~-~~~~afv~f~~~~~A~~a~ 111 (345)
-.++...+...| .|.++.+.... ..+...+.+.+.+.|.+++
T Consensus 12 l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 12 LAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 356677777777 67777766654 3456667788877777765
No 287
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=20.45 E-value=2.5e+02 Score=24.98 Aligned_cols=141 Identities=9% Similarity=0.046 Sum_probs=70.5
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccccCCC
Q 019152 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQR 135 (345)
Q Consensus 56 ~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 135 (345)
..++|++-+-.+---+.|.+..+.-|.-......++..+|.|-|-..... +.-+..|.-.. ..++.+......+
T Consensus 81 ~~~~f~GsvG~Dk~ge~l~~~~~~aGv~~~yq~~~d~~TGtCavli~~~n--RSL~anLgAAn----~f~~dhl~~~~~~ 154 (343)
T KOG2854|consen 81 GATVFFGSVGKDKFGELLKSKARAAGVNVHYQVKEDGPTGTCAVLITGDN--RSLCANLGAAN----CFKVDHLDKEENW 154 (343)
T ss_pred CceEEEeeccCchHHHHHHHHHHhcCceEEEEeccCCCCceEEEEEeCCC--cchhhccchhh----ccCHHHhcchhhh
Confidence 37899998887766677777777777655556666777776665544433 22111111000 0011111000011
Q ss_pred CCCCCceeEEECCCCccCCHHHHHHHhccCCCcce-----eEeeec-----CCCCCcccEEEEEeCCHHHHHHHHHH
Q 019152 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD-----ARVMWD-----QKTGRSRGFGFVSFRNQQDAQSAIND 202 (345)
Q Consensus 136 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~-----~~~~~~-----~~~~~~~g~~fv~f~~~~~a~~a~~~ 202 (345)
.-...-..+||.++-..+..+-++.+-...-+... ...++- ..-.+...|+.+.|.++++|.+..+.
T Consensus 155 ~lveka~v~yv~Gffltv~p~ai~~v~qh~~e~~r~~~lnlsapfI~q~~~~~l~~v~~y~DiifgNe~EA~af~~~ 231 (343)
T KOG2854|consen 155 ALVEKAKVFYVAGFFLTVSPDAIRKVAQHAAENNRVFTLNLSAPFISQFFKDALDKVLPYADIIFGNEDEAAAFARA 231 (343)
T ss_pred hhhhheeEEEEEEEEEEeChHHHHHHHHHHHHhcchhheeccchhHHHHHHHHHHhhcCcceEEEcCHHHHHHHHHh
Confidence 11112245677776666655544443322111111 110000 00112345899999999999887764
No 288
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=20.30 E-value=37 Score=22.13 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=17.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHh
Q 019152 54 STCRSVYVGNIHTQVTEPLLQEVFS 78 (345)
Q Consensus 54 ~~~~~l~v~~lp~~~t~~~l~~~f~ 78 (345)
..+++|+||++|..+-.+.=..+++
T Consensus 25 ~tSr~vflG~IP~~W~~~~~~~~~k 49 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDHRKSWYK 49 (67)
T ss_pred HcCceEEECCCChHHHHcCcchHHH
Confidence 3468899999999876655433333
No 289
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=20.18 E-value=86 Score=29.56 Aligned_cols=71 Identities=13% Similarity=0.201 Sum_probs=45.3
Q ss_pred EEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeec
Q 019152 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAM 338 (345)
Q Consensus 265 l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~ 338 (345)
..+.++|...-...+...+.+-+...........-..+++++|++.+.+.+|+..++|. ...+..+++..+
T Consensus 28 ~~~e~~~~~~~q~~~~k~~~~~~~~~~s~tk~~~~~~~~~~~~et~~~~~ka~~~v~g~---~~k~~~~~~~~~ 98 (534)
T KOG2187|consen 28 ISIEMIPTFIGQKQLNKVLLKILRDVKSKTKLPKMPKYAYVTFETPSDAGKAINLVDGL---LYKGFILRVQLG 98 (534)
T ss_pred cceeccCchhhhhHHHhhhhhhcccccccCCCCCCCCceEEEEeccchhhhHHHHHhhh---hhhcchhhhhhc
Confidence 44455666655555544444322112222244444789999999999999999999998 666666665544
Done!