Query 019152
Match_columns 345
No_of_seqs 236 out of 2832
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 11:42:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019152.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019152hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 1.3E-46 4.6E-51 326.1 28.9 238 55-341 21-264 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 1.4E-45 4.9E-50 320.9 26.5 243 52-340 37-290 (292)
3 3md3_A Nuclear and cytoplasmic 100.0 6.8E-34 2.3E-38 226.4 20.2 162 57-219 1-165 (166)
4 4f02_A Polyadenylate-binding p 100.0 4E-34 1.4E-38 236.7 18.6 166 53-221 12-181 (213)
5 4f02_A Polyadenylate-binding p 100.0 1.2E-33 4.2E-38 233.7 17.7 164 139-340 13-180 (213)
6 1b7f_A Protein (SXL-lethal pro 100.0 6.3E-33 2.1E-37 221.2 19.9 161 55-218 2-168 (168)
7 2qfj_A FBP-interacting repress 100.0 6.4E-33 2.2E-37 230.4 20.2 169 54-222 26-206 (216)
8 1fxl_A Paraneoplastic encephal 100.0 2.2E-32 7.7E-37 217.8 20.3 160 56-218 2-167 (167)
9 1l3k_A Heterogeneous nuclear r 100.0 2.2E-32 7.6E-37 223.7 20.5 171 52-224 9-186 (196)
10 1b7f_A Protein (SXL-lethal pro 100.0 3.1E-32 1.1E-36 217.2 20.0 159 140-338 2-168 (168)
11 3md3_A Nuclear and cytoplasmic 100.0 4.8E-32 1.7E-36 215.6 18.9 160 142-340 1-166 (166)
12 3nmr_A Cugbp ELAV-like family 100.0 4.8E-32 1.6E-36 217.6 18.8 162 55-219 2-175 (175)
13 1fxl_A Paraneoplastic encephal 100.0 7.8E-32 2.7E-36 214.6 19.9 158 141-338 2-167 (167)
14 2adc_A Polypyrimidine tract-bi 100.0 9E-32 3.1E-36 225.1 21.0 196 138-342 31-229 (229)
15 2g4b_A Splicing factor U2AF 65 100.0 5.3E-32 1.8E-36 216.7 18.6 159 55-219 3-172 (172)
16 1qm9_A Polypyrimidine tract-bi 100.0 1.7E-31 5.8E-36 218.7 19.9 193 141-342 3-198 (198)
17 2yh0_A Splicing factor U2AF 65 100.0 1.9E-31 6.4E-36 218.5 18.9 165 55-222 3-195 (198)
18 3tyt_A Heterogeneous nuclear r 100.0 1.3E-31 4.6E-36 219.1 17.8 161 55-218 3-204 (205)
19 2cjk_A Nuclear polyadenylated 100.0 3.3E-32 1.1E-36 216.9 13.4 161 55-221 2-166 (167)
20 3nmr_A Cugbp ELAV-like family 100.0 3.9E-31 1.3E-35 212.2 19.2 160 140-338 2-174 (175)
21 2adc_A Polypyrimidine tract-bi 100.0 5.7E-31 1.9E-35 220.2 20.8 163 53-221 31-228 (229)
22 2qfj_A FBP-interacting repress 100.0 6.6E-32 2.3E-36 224.3 14.7 172 141-341 28-205 (216)
23 1l3k_A Heterogeneous nuclear r 100.0 4.8E-31 1.6E-35 215.8 19.2 168 137-340 9-182 (196)
24 3pgw_A U1-A; protein-RNA compl 100.0 8.8E-31 3E-35 226.4 20.9 195 138-340 6-282 (282)
25 3tyt_A Heterogeneous nuclear r 100.0 6.4E-31 2.2E-35 215.0 18.3 189 140-338 3-204 (205)
26 3smz_A Protein raver-1, ribonu 100.0 1.8E-30 6.2E-35 224.7 21.4 168 55-223 94-266 (284)
27 1fje_B Nucleolin RBD12, protei 100.0 3.4E-31 1.2E-35 212.6 15.2 163 52-221 9-174 (175)
28 1qm9_A Polypyrimidine tract-bi 100.0 1.1E-30 3.9E-35 213.8 16.9 160 56-221 3-197 (198)
29 3pgw_A U1-A; protein-RNA compl 100.0 5.4E-30 1.9E-34 221.5 21.3 162 53-219 6-281 (282)
30 3sde_A Paraspeckle component 1 100.0 5.3E-30 1.8E-34 218.5 20.3 158 52-221 18-179 (261)
31 2cjk_A Nuclear polyadenylated 100.0 4.3E-31 1.5E-35 210.3 12.2 158 140-340 2-165 (167)
32 1fje_B Nucleolin RBD12, protei 100.0 1.2E-30 4.1E-35 209.4 13.4 164 137-340 9-173 (175)
33 2ghp_A U4/U6 snRNA-associated 100.0 3.6E-30 1.2E-34 223.7 17.3 166 55-221 116-291 (292)
34 2yh0_A Splicing factor U2AF 65 100.0 3.5E-30 1.2E-34 210.9 15.3 181 141-342 4-195 (198)
35 2g4b_A Splicing factor U2AF 65 100.0 2.3E-29 7.9E-34 201.3 16.8 153 140-339 3-172 (172)
36 3sde_A Paraspeckle component 1 100.0 4.4E-28 1.5E-32 206.7 19.5 153 137-340 18-178 (261)
37 2kn4_A Immunoglobulin G-bindin 99.9 3.3E-22 1.1E-26 157.2 14.1 138 86-223 3-152 (158)
38 4f25_A Polyadenylate-binding p 99.9 2E-22 6.8E-27 149.2 10.1 102 55-156 4-112 (115)
39 2i2y_A Fusion protein consists 99.9 1E-21 3.5E-26 152.8 11.2 138 179-341 9-148 (150)
40 4f25_A Polyadenylate-binding p 99.9 1.6E-21 5.4E-26 144.3 10.2 109 141-278 5-113 (115)
41 2i2y_A Fusion protein consists 99.9 2.7E-21 9.2E-26 150.4 10.8 124 92-221 11-148 (150)
42 2kn4_A Immunoglobulin G-bindin 99.8 1.8E-20 6.2E-25 147.2 13.7 143 170-341 2-150 (158)
43 4fxv_A ELAV-like protein 1; RN 99.8 4.7E-20 1.6E-24 132.2 10.8 80 141-220 19-98 (99)
44 3r27_A HnRNP L, heterogeneous 99.8 1.4E-19 4.9E-24 127.9 9.9 80 258-340 17-96 (100)
45 3lqv_A PRE-mRNA branch site pr 99.8 1.1E-19 3.9E-24 134.6 9.6 104 53-167 5-109 (115)
46 2hvz_A Splicing factor, argini 99.8 1.5E-19 5.2E-24 130.6 9.1 94 57-151 1-101 (101)
47 2lxi_A RNA-binding protein 10; 99.8 1.6E-19 5.5E-24 127.4 8.1 83 141-223 1-85 (91)
48 4fxv_A ELAV-like protein 1; RN 99.8 3.5E-19 1.2E-23 127.7 9.9 77 260-341 17-99 (99)
49 1sjq_A Polypyrimidine tract-bi 99.8 5.5E-19 1.9E-23 126.2 10.0 81 53-135 13-95 (105)
50 2lea_A Serine/arginine-rich sp 99.8 2E-19 6.9E-24 136.6 8.0 124 96-223 6-129 (135)
51 1sjq_A Polypyrimidine tract-bi 99.8 4.8E-19 1.6E-23 126.5 9.2 76 261-341 15-92 (105)
52 3s8s_A Histone-lysine N-methyl 99.8 1.1E-18 3.6E-23 127.6 11.2 83 139-221 4-86 (110)
53 2lkz_A RNA-binding protein 5; 99.8 7.9E-19 2.7E-23 124.3 8.8 79 142-220 10-94 (95)
54 1x4d_A Matrin 3; structural ge 99.8 1.1E-18 3.9E-23 124.7 9.6 81 52-134 11-94 (102)
55 2cqi_A Nucleolysin TIAR; RNA r 99.8 4.5E-18 1.5E-22 123.3 13.0 85 52-136 11-97 (103)
56 2cq3_A RNA-binding protein 9; 99.8 5.5E-18 1.9E-22 122.8 13.4 84 52-135 11-96 (103)
57 1x4a_A Splicing factor, argini 99.8 6.1E-18 2.1E-22 123.9 13.6 84 52-135 18-102 (109)
58 1sjr_A Polypyrimidine tract-bi 99.8 3E-18 1E-22 132.0 12.2 81 53-133 43-125 (164)
59 1x4d_A Matrin 3; structural ge 99.8 1.1E-18 3.6E-23 124.8 8.9 77 261-340 14-91 (102)
60 2lkz_A RNA-binding protein 5; 99.8 7.2E-19 2.5E-23 124.5 8.0 81 261-341 8-95 (95)
61 1wex_A Hypothetical protein (r 99.8 2.1E-18 7.1E-23 124.3 10.6 81 258-341 11-91 (104)
62 2d9p_A Polyadenylate-binding p 99.8 3.8E-18 1.3E-22 123.6 12.0 86 52-137 11-98 (103)
63 2wbr_A GW182, gawky, LD47780P; 99.8 1.5E-18 5.2E-23 117.9 9.1 74 262-340 7-80 (89)
64 1x5u_A Splicing factor 3B subu 99.8 6E-18 2E-22 123.1 12.7 84 52-135 11-98 (105)
65 2cq1_A PTB-like protein L; RRM 99.8 3.7E-18 1.3E-22 122.2 11.2 78 259-341 12-91 (101)
66 2e5j_A Methenyltetrahydrofolat 99.8 5.4E-18 1.8E-22 121.4 12.0 83 50-133 13-95 (97)
67 3r27_A HnRNP L, heterogeneous 99.8 2.6E-18 8.9E-23 121.4 10.1 78 53-132 18-97 (100)
68 2kxn_B Transformer-2 protein h 99.8 3E-18 1E-22 129.0 11.1 82 52-133 42-127 (129)
69 2dnz_A Probable RNA-binding pr 99.8 7.6E-18 2.6E-22 120.2 12.5 84 53-136 2-89 (95)
70 1x5s_A Cold-inducible RNA-bind 99.8 6.8E-18 2.3E-22 122.1 12.3 84 53-136 9-96 (102)
71 1whw_A Hypothetical protein ri 99.8 6.3E-18 2.2E-22 121.6 11.9 84 53-136 5-92 (99)
72 3md1_A Nuclear and cytoplasmic 99.8 5.6E-18 1.9E-22 117.7 11.3 80 142-221 2-81 (83)
73 1wex_A Hypothetical protein (r 99.8 7.4E-18 2.5E-22 121.4 12.2 80 53-134 12-93 (104)
74 2wbr_A GW182, gawky, LD47780P; 99.8 2E-18 6.8E-23 117.4 8.6 73 56-130 7-79 (89)
75 2dgs_A DAZ-associated protein 99.8 1.1E-17 3.6E-22 120.4 12.9 83 53-136 7-93 (99)
76 3bs9_A Nucleolysin TIA-1 isofo 99.8 4.1E-18 1.4E-22 119.5 10.5 83 139-221 4-86 (87)
77 2lxi_A RNA-binding protein 10; 99.8 7.2E-19 2.5E-23 124.1 6.5 79 56-134 1-85 (91)
78 2cq1_A PTB-like protein L; RRM 99.8 8.9E-18 3.1E-22 120.2 12.3 81 53-135 12-94 (101)
79 2ytc_A PRE-mRNA-splicing facto 99.8 3.9E-18 1.3E-22 119.0 10.2 76 259-339 9-85 (85)
80 2ad9_A Polypyrimidine tract-bi 99.8 2.9E-18 9.9E-23 125.7 9.9 78 259-341 28-107 (119)
81 2cpz_A CUG triplet repeat RNA- 99.8 1.3E-17 4.5E-22 123.3 13.5 85 53-137 22-110 (115)
82 2dgo_A Cytotoxic granule-assoc 99.8 1.4E-17 4.6E-22 123.3 13.5 90 135-224 9-98 (115)
83 2dnq_A RNA-binding protein 4B; 99.8 1.1E-17 3.8E-22 118.0 12.3 80 53-136 5-84 (90)
84 2dnm_A SRP46 splicing factor; 99.8 6.5E-18 2.2E-22 122.4 11.3 83 53-135 10-96 (103)
85 2cph_A RNA binding motif prote 99.8 1.4E-17 4.7E-22 121.7 13.0 85 52-136 11-101 (107)
86 2dgo_A Cytotoxic granule-assoc 99.8 1.1E-17 3.9E-22 123.7 12.6 85 51-135 10-98 (115)
87 2cq0_A Eukaryotic translation 99.8 9.3E-18 3.2E-22 121.6 11.8 88 136-223 10-97 (103)
88 2dnh_A Bruno-like 5, RNA bindi 99.8 1.6E-17 5.5E-22 120.8 13.1 83 53-135 12-100 (105)
89 2ad9_A Polypyrimidine tract-bi 99.8 5.4E-18 1.8E-22 124.3 10.5 82 53-136 28-111 (119)
90 2e5h_A Zinc finger CCHC-type a 99.8 7.4E-18 2.5E-22 120.0 11.1 79 52-130 12-94 (94)
91 3s8s_A Histone-lysine N-methyl 99.8 6.1E-18 2.1E-22 123.5 10.8 79 54-132 4-86 (110)
92 3mdf_A Peptidyl-prolyl CIS-tra 99.8 5.8E-18 2E-22 118.1 10.1 81 139-219 5-85 (85)
93 2err_A Ataxin-2-binding protei 99.8 4.2E-18 1.4E-22 124.6 9.8 81 52-132 25-107 (109)
94 1x5t_A Splicing factor 3B subu 99.8 9E-18 3.1E-22 120.0 11.3 86 139-224 3-89 (96)
95 2cq0_A Eukaryotic translation 99.8 1E-17 3.5E-22 121.4 11.6 86 50-135 9-98 (103)
96 2cqc_A Arginine/serine-rich sp 99.8 1E-17 3.4E-22 119.6 11.4 86 135-220 9-94 (95)
97 2khc_A Testis-specific RNP-typ 99.8 9.3E-18 3.2E-22 124.8 11.7 79 52-130 36-118 (118)
98 2dgp_A Bruno-like 4, RNA bindi 99.8 1.4E-17 4.6E-22 121.4 12.3 85 52-136 9-100 (106)
99 1whw_A Hypothetical protein ri 99.8 1.3E-17 4.5E-22 119.9 12.0 86 138-223 5-90 (99)
100 2x1f_A MRNA 3'-END-processing 99.8 7.4E-18 2.5E-22 120.4 10.6 82 141-222 2-83 (96)
101 2cpj_A Non-POU domain-containi 99.8 1.2E-17 4.2E-22 120.0 11.8 81 52-134 11-91 (99)
102 2cpf_A RNA binding motif prote 99.8 6.7E-18 2.3E-22 121.2 10.4 84 54-137 3-93 (98)
103 1x4h_A RNA-binding protein 28; 99.7 1.6E-17 5.5E-22 122.1 12.6 84 52-135 11-104 (111)
104 2dnz_A Probable RNA-binding pr 99.7 1.1E-17 3.8E-22 119.3 11.4 85 139-223 3-87 (95)
105 2cqb_A Peptidyl-prolyl CIS-tra 99.7 6.7E-18 2.3E-22 122.2 10.3 85 53-137 9-97 (102)
106 1why_A Hypothetical protein ri 99.7 2.1E-17 7.2E-22 118.3 12.8 79 53-133 14-94 (97)
107 1p27_B RNA-binding protein 8A; 99.7 1E-17 3.5E-22 122.1 11.2 81 53-133 20-104 (106)
108 1rk8_A CG8781-PA, CG8781-PA pr 99.7 6.9E-18 2.4E-22 133.1 11.1 125 99-223 11-154 (165)
109 4a8x_A RNA-binding protein wit 99.7 7E-18 2.4E-22 118.6 10.0 79 55-133 3-86 (88)
110 2jvr_A Nucleolar protein 3; RN 99.7 3.6E-18 1.2E-22 124.3 8.6 81 53-133 25-106 (111)
111 2cpz_A CUG triplet repeat RNA- 99.7 1.5E-17 5.3E-22 123.0 12.2 88 136-223 20-107 (115)
112 3bs9_A Nucleolysin TIA-1 isofo 99.7 5.2E-18 1.8E-22 119.0 9.2 79 54-132 4-86 (87)
113 2do4_A Squamous cell carcinoma 99.7 2.3E-17 7.9E-22 118.8 12.7 81 53-133 14-97 (100)
114 1u6f_A Tcubp1, RNA-binding pro 99.7 2.2E-17 7.5E-22 126.5 13.3 84 52-135 38-125 (139)
115 1x4f_A Matrin 3; structural ge 99.7 4.9E-18 1.7E-22 123.1 9.0 79 259-340 22-101 (112)
116 2cqc_A Arginine/serine-rich sp 99.7 1.5E-17 5.1E-22 118.7 11.5 81 51-131 10-94 (95)
117 2do4_A Squamous cell carcinoma 99.7 1.9E-17 6.5E-22 119.3 12.1 85 137-222 13-97 (100)
118 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.6E-17 5.5E-22 120.1 11.7 87 138-224 9-95 (102)
119 2jrs_A RNA-binding protein 39; 99.7 1.3E-17 4.5E-22 121.6 11.2 86 136-221 21-106 (108)
120 2la6_A RNA-binding protein FUS 99.7 1.5E-17 5E-22 119.6 11.3 84 136-219 8-99 (99)
121 2la6_A RNA-binding protein FUS 99.7 1.6E-17 5.5E-22 119.4 11.5 78 53-130 10-99 (99)
122 3lqv_A PRE-mRNA branch site pr 99.7 4.8E-18 1.6E-22 125.8 8.9 104 138-287 5-108 (115)
123 1p27_B RNA-binding protein 8A; 99.7 1.2E-17 4E-22 121.7 10.8 86 137-222 19-104 (106)
124 2dgs_A DAZ-associated protein 99.7 2.3E-17 7.8E-22 118.6 12.1 85 138-223 7-91 (99)
125 2e5h_A Zinc finger CCHC-type a 99.7 1.6E-17 5.3E-22 118.3 11.0 83 137-219 12-94 (94)
126 3p5t_L Cleavage and polyadenyl 99.7 2.2E-18 7.4E-23 121.6 6.5 81 142-222 2-84 (90)
127 1x4c_A Splicing factor, argini 99.7 2.6E-17 9E-22 120.2 12.4 80 53-135 12-96 (108)
128 2dgx_A KIAA0430 protein; RRM d 99.7 1.6E-17 5.5E-22 118.5 11.0 81 54-134 7-92 (96)
129 2cqd_A RNA-binding region cont 99.7 2.2E-17 7.5E-22 122.4 12.0 87 50-137 11-101 (116)
130 2x1f_A MRNA 3'-END-processing 99.7 1.2E-17 4E-22 119.4 10.1 80 55-134 1-84 (96)
131 1x5u_A Splicing factor 3B subu 99.7 2E-17 6.9E-22 120.3 11.5 88 136-223 10-97 (105)
132 2cpj_A Non-POU domain-containi 99.7 1.5E-17 5E-22 119.6 10.5 79 259-342 12-90 (99)
133 1wi8_A EIF-4B, eukaryotic tran 99.7 2.3E-17 7.9E-22 119.7 11.5 82 53-136 12-98 (104)
134 2e44_A Insulin-like growth fac 99.7 2.5E-17 8.4E-22 117.7 11.5 81 53-133 12-93 (96)
135 1x5t_A Splicing factor 3B subu 99.7 1.2E-17 4.2E-22 119.3 9.9 83 54-136 3-90 (96)
136 3md1_A Nuclear and cytoplasmic 99.7 1.4E-17 4.7E-22 115.7 9.9 77 57-133 2-82 (83)
137 2jrs_A RNA-binding protein 39; 99.7 2.6E-17 8.9E-22 120.0 11.7 81 53-133 23-107 (108)
138 2xnq_A Nuclear polyadenylated 99.7 2E-17 6.7E-22 118.2 10.8 76 53-132 19-95 (97)
139 2la4_A Nuclear and cytoplasmic 99.7 2.9E-18 9.9E-23 123.8 6.5 77 53-131 24-100 (101)
140 3ns6_A Eukaryotic translation 99.7 4.2E-18 1.4E-22 122.5 7.3 82 139-220 4-92 (100)
141 2dnm_A SRP46 splicing factor; 99.7 1.3E-17 4.4E-22 120.8 9.9 87 137-223 9-95 (103)
142 1x4f_A Matrin 3; structural ge 99.7 2.5E-17 8.7E-22 119.3 11.4 80 53-134 22-104 (112)
143 2ywk_A Putative RNA-binding pr 99.7 1.2E-17 4.1E-22 119.2 9.5 78 53-130 13-93 (95)
144 2fy1_A RNA-binding motif prote 99.7 2.9E-17 1E-21 121.3 11.9 82 53-134 4-88 (116)
145 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.9E-17 6.4E-22 115.5 10.3 78 53-130 4-85 (85)
146 1x4g_A Nucleolysin TIAR; struc 99.7 2.1E-17 7.3E-22 120.9 11.0 82 53-136 22-103 (109)
147 1why_A Hypothetical protein ri 99.7 3.4E-17 1.2E-21 117.2 11.7 77 260-341 15-93 (97)
148 2dnh_A Bruno-like 5, RNA bindi 99.7 3.5E-17 1.2E-21 119.0 12.0 86 138-224 12-100 (105)
149 2ytc_A PRE-mRNA-splicing facto 99.7 2E-17 6.7E-22 115.4 10.2 76 53-130 9-85 (85)
150 2khc_A Testis-specific RNP-typ 99.7 1.5E-17 5E-22 123.7 10.1 85 135-219 34-118 (118)
151 2dgt_A RNA-binding protein 30; 99.7 3.7E-17 1.3E-21 115.7 11.5 79 53-135 7-85 (92)
152 1oo0_B CG8781-PA, drosophila Y 99.7 2.6E-17 8.9E-22 120.7 11.1 85 138-222 23-107 (110)
153 1x5s_A Cold-inducible RNA-bind 99.7 2E-17 6.9E-22 119.6 10.3 86 138-223 9-94 (102)
154 1x4h_A RNA-binding protein 28; 99.7 3.9E-17 1.3E-21 120.1 12.0 87 137-223 11-103 (111)
155 2dgv_A HnRNP M, heterogeneous 99.7 2.7E-17 9.3E-22 116.5 10.7 82 53-134 5-88 (92)
156 2div_A TRNA selenocysteine ass 99.7 2.6E-17 8.7E-22 118.4 10.6 85 138-222 6-95 (99)
157 2fy1_A RNA-binding motif prote 99.7 3.5E-17 1.2E-21 120.9 11.6 83 139-222 5-87 (116)
158 2dng_A Eukaryotic translation 99.7 3.9E-17 1.3E-21 118.3 11.6 82 53-136 12-97 (103)
159 2cpe_A RNA-binding protein EWS 99.7 4.6E-17 1.6E-21 120.0 12.2 88 136-223 10-105 (113)
160 2cph_A RNA binding motif prote 99.7 4.2E-17 1.4E-21 119.0 11.8 87 137-223 11-99 (107)
161 1whx_A Hypothetical protein ri 99.7 1.5E-17 5.1E-22 121.9 9.4 77 262-343 10-86 (111)
162 2kxn_B Transformer-2 protein h 99.7 1.4E-17 4.7E-22 125.4 9.3 87 136-222 41-127 (129)
163 2d9p_A Polyadenylate-binding p 99.7 4.4E-17 1.5E-21 118.0 11.7 87 136-224 10-96 (103)
164 2kt5_A RNA and export factor-b 99.7 1.6E-16 5.5E-21 119.1 15.2 84 51-134 30-116 (124)
165 2jvo_A Nucleolar protein 3; nu 99.7 1.9E-17 6.6E-22 120.6 9.6 77 53-133 28-104 (108)
166 2dgp_A Bruno-like 4, RNA bindi 99.7 3E-17 1E-21 119.6 10.6 88 136-223 8-98 (106)
167 2cpf_A RNA binding motif prote 99.7 2.6E-17 8.9E-22 118.1 10.1 85 139-223 3-90 (98)
168 2a3j_A U1 small nuclear ribonu 99.7 3.7E-17 1.3E-21 122.1 11.1 80 54-133 27-111 (127)
169 2cqp_A RNA-binding protein 12; 99.7 4.8E-17 1.6E-21 116.7 11.3 84 138-221 12-95 (98)
170 2dgx_A KIAA0430 protein; RRM d 99.7 3.3E-17 1.1E-21 116.9 10.4 76 261-341 8-90 (96)
171 2dnp_A RNA-binding protein 14; 99.7 4.8E-17 1.6E-21 114.7 11.1 78 53-134 6-83 (90)
172 2la4_A Nuclear and cytoplasmic 99.7 1.6E-17 5.5E-22 119.9 8.7 75 261-340 26-100 (101)
173 2jwn_A Embryonic polyadenylate 99.7 3.1E-18 1E-22 128.6 5.1 82 140-222 35-116 (124)
174 2cpe_A RNA-binding protein EWS 99.7 5.4E-17 1.8E-21 119.7 11.7 85 52-136 11-107 (113)
175 1oo0_B CG8781-PA, drosophila Y 99.7 3.5E-17 1.2E-21 120.0 10.5 82 53-134 23-108 (110)
176 4a8x_A RNA-binding protein wit 99.7 3.3E-17 1.1E-21 115.1 9.9 82 141-222 4-86 (88)
177 2dng_A Eukaryotic translation 99.7 8.4E-17 2.9E-21 116.5 12.3 85 137-223 11-95 (103)
178 2lea_A Serine/arginine-rich sp 99.7 1E-17 3.5E-22 127.2 7.7 116 185-341 6-127 (135)
179 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.1E-17 3.7E-22 120.4 7.3 78 53-132 16-98 (100)
180 2dgu_A Heterogeneous nuclear r 99.7 6.9E-17 2.3E-21 116.9 11.5 79 53-135 8-86 (103)
181 2m2b_A RNA-binding protein 10; 99.7 3.9E-17 1.3E-21 123.6 10.6 81 53-134 20-110 (131)
182 2do0_A HnRNP M, heterogeneous 99.7 1E-16 3.5E-21 118.4 12.6 81 53-133 12-95 (114)
183 2div_A TRNA selenocysteine ass 99.7 4.8E-17 1.6E-21 116.9 10.5 81 53-133 6-95 (99)
184 2ywk_A Putative RNA-binding pr 99.7 3.9E-17 1.3E-21 116.5 10.0 83 137-220 12-94 (95)
185 2cpd_A Apobec-1 stimulating pr 99.7 1.2E-16 4.2E-21 114.7 12.5 79 53-135 12-92 (99)
186 2cq3_A RNA-binding protein 9; 99.7 9.1E-17 3.1E-21 116.3 11.9 78 259-341 12-93 (103)
187 1wi8_A EIF-4B, eukaryotic tran 99.7 7.5E-17 2.6E-21 117.0 11.5 85 137-223 11-96 (104)
188 1x4g_A Nucleolysin TIAR; struc 99.7 3.6E-17 1.2E-21 119.7 9.9 76 261-341 24-99 (109)
189 2kvi_A Nuclear polyadenylated 99.7 4.7E-17 1.6E-21 116.2 10.2 78 53-134 7-85 (96)
190 2cpx_A Hypothetical protein FL 99.7 1.2E-16 4.2E-21 118.1 12.8 84 53-136 22-109 (115)
191 1x4a_A Splicing factor, argini 99.7 1.2E-16 4.2E-21 116.9 12.5 78 259-341 19-99 (109)
192 3ulh_A THO complex subunit 4; 99.7 7.1E-17 2.4E-21 117.8 11.2 82 137-219 25-106 (107)
193 2hvz_A Splicing factor, argini 99.7 2.2E-17 7.6E-22 119.1 8.3 76 142-222 1-76 (101)
194 2cpi_A CCR4-NOT transcription 99.7 2.6E-17 8.8E-22 120.8 8.7 82 52-133 11-102 (111)
195 1s79_A Lupus LA protein; RRM, 99.7 3.8E-17 1.3E-21 117.7 9.4 78 53-131 8-88 (103)
196 2ek1_A RNA-binding protein 12; 99.7 4.1E-17 1.4E-21 116.3 9.5 82 139-220 13-94 (95)
197 2cq4_A RNA binding motif prote 99.7 2.5E-17 8.6E-22 121.6 8.6 80 53-133 22-105 (114)
198 3n9u_C Cleavage and polyadenyl 99.7 3E-17 1E-21 127.5 9.4 79 54-132 53-137 (156)
199 1u6f_A Tcubp1, RNA-binding pro 99.7 8.2E-17 2.8E-21 123.3 11.7 88 137-224 38-125 (139)
200 2cqi_A Nucleolysin TIAR; RNA r 99.7 9.3E-17 3.2E-21 116.3 11.4 78 259-341 12-93 (103)
201 3p5t_L Cleavage and polyadenyl 99.7 1.8E-17 6.2E-22 116.8 7.3 78 57-134 2-85 (90)
202 3ns6_A Eukaryotic translation 99.7 2.2E-17 7.4E-22 118.7 7.8 79 54-132 4-93 (100)
203 3ucg_A Polyadenylate-binding p 99.7 5.1E-17 1.8E-21 114.4 9.5 80 141-221 6-85 (89)
204 2dhg_A TRNA selenocysteine ass 99.7 4.6E-17 1.6E-21 118.1 9.6 86 137-223 5-92 (104)
205 2dh8_A DAZ-associated protein 99.7 5.3E-17 1.8E-21 118.0 9.8 84 52-136 12-99 (105)
206 2fc9_A NCL protein; structure 99.7 4.2E-17 1.4E-21 117.7 9.1 82 52-136 11-95 (101)
207 2dnq_A RNA-binding protein 4B; 99.7 9.3E-17 3.2E-21 113.2 10.6 75 260-341 6-80 (90)
208 2cqd_A RNA-binding region cont 99.7 1.1E-16 3.8E-21 118.5 11.4 85 137-222 13-97 (116)
209 2xnq_A Nuclear polyadenylated 99.7 7.9E-17 2.7E-21 115.0 10.2 78 257-341 17-95 (97)
210 3s7r_A Heterogeneous nuclear r 99.7 8.4E-17 2.9E-21 112.7 10.2 80 138-218 8-87 (87)
211 2cqp_A RNA-binding protein 12; 99.7 5.6E-17 1.9E-21 116.3 9.5 80 53-132 12-95 (98)
212 1s79_A Lupus LA protein; RRM, 99.7 3.5E-17 1.2E-21 117.9 8.4 81 138-220 8-88 (103)
213 2do0_A HnRNP M, heterogeneous 99.7 2.4E-16 8.3E-21 116.3 13.1 85 138-223 12-96 (114)
214 2dhg_A TRNA selenocysteine ass 99.7 1.4E-16 4.7E-21 115.6 11.5 83 53-135 6-93 (104)
215 3s7r_A Heterogeneous nuclear r 99.7 5.6E-17 1.9E-21 113.6 9.1 77 52-129 7-87 (87)
216 3n9u_C Cleavage and polyadenyl 99.7 5.2E-17 1.8E-21 126.2 9.7 81 140-220 54-136 (156)
217 3ex7_B RNA-binding protein 8A; 99.7 1.2E-16 4.1E-21 120.2 11.4 83 53-135 19-105 (126)
218 3ex7_B RNA-binding protein 8A; 99.7 9E-17 3.1E-21 120.9 10.7 88 137-224 18-105 (126)
219 1p1t_A Cleavage stimulation fa 99.7 5.2E-17 1.8E-21 117.9 9.0 83 140-222 7-89 (104)
220 2err_A Ataxin-2-binding protei 99.7 5.3E-17 1.8E-21 118.7 9.0 80 257-341 24-107 (109)
221 2a3j_A U1 small nuclear ribonu 99.7 9E-17 3.1E-21 120.0 10.4 78 259-341 26-110 (127)
222 2mss_A Protein (musashi1); RNA 99.7 3.3E-17 1.1E-21 111.3 7.3 75 143-218 1-75 (75)
223 2rs2_A Musashi-1, RNA-binding 99.7 8.7E-17 3E-21 117.5 10.1 85 137-222 21-105 (109)
224 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.9E-17 9.7E-22 118.2 7.4 83 137-221 15-98 (100)
225 3pgw_S U1-70K; protein-RNA com 99.7 1.1E-17 3.8E-22 151.5 6.5 86 138-223 99-184 (437)
226 2cq2_A Hypothetical protein LO 99.7 6.3E-17 2.1E-21 117.2 9.0 76 261-341 24-106 (114)
227 3ulh_A THO complex subunit 4; 99.7 8.6E-17 2.9E-21 117.4 9.9 78 53-130 26-106 (107)
228 2rs2_A Musashi-1, RNA-binding 99.7 7.4E-17 2.5E-21 117.8 9.4 82 52-134 21-106 (109)
229 2dgv_A HnRNP M, heterogeneous 99.7 1.2E-16 4.3E-21 113.1 10.3 83 138-222 5-87 (92)
230 2kt5_A RNA and export factor-b 99.7 2.7E-16 9.3E-21 117.9 12.7 86 137-223 31-116 (124)
231 2e5i_A Heterogeneous nuclear r 99.7 5.1E-16 1.8E-20 114.7 13.9 79 53-133 22-103 (124)
232 1x4e_A RNA binding motif, sing 99.7 1.9E-17 6.6E-22 115.4 6.0 78 53-130 2-83 (85)
233 2cqh_A IGF-II mRNA-binding pro 99.7 6E-17 2.1E-21 114.9 8.6 80 53-135 5-86 (93)
234 1wf1_A RNA-binding protein RAL 99.7 2.7E-16 9.2E-21 115.2 12.3 78 53-134 24-102 (110)
235 2dgw_A Probable RNA-binding pr 99.7 2.9E-16 9.9E-21 110.9 11.9 81 139-222 8-88 (91)
236 1x5p_A Negative elongation fac 99.7 3.3E-16 1.1E-20 112.0 12.3 81 52-136 11-91 (97)
237 1x4c_A Splicing factor, argini 99.7 1.9E-16 6.5E-21 115.6 11.2 74 261-340 14-92 (108)
238 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.4E-16 4.8E-21 122.3 11.0 79 51-129 58-140 (140)
239 2m2b_A RNA-binding protein 10; 99.7 5.7E-17 2E-21 122.7 8.6 85 137-222 19-109 (131)
240 1x4e_A RNA binding motif, sing 99.7 1.6E-17 5.4E-22 115.9 5.1 81 139-219 3-83 (85)
241 2dh8_A DAZ-associated protein 99.7 7.1E-17 2.4E-21 117.3 8.7 86 137-223 12-97 (105)
242 1whx_A Hypothetical protein ri 99.7 1.3E-16 4.5E-21 116.9 10.1 77 54-132 8-84 (111)
243 2diu_A KIAA0430 protein; struc 99.7 3.1E-16 1E-20 107.6 11.1 74 56-135 8-87 (96)
244 3ucg_A Polyadenylate-binding p 99.7 1.2E-16 4.1E-21 112.5 9.4 77 55-132 5-85 (89)
245 2jvo_A Nucleolar protein 3; nu 99.7 1.1E-16 3.7E-21 116.6 9.4 76 259-341 28-103 (108)
246 2cqg_A TDP-43, TAR DNA-binding 99.7 3.9E-16 1.3E-20 113.0 12.2 86 136-223 10-95 (103)
247 2cqg_A TDP-43, TAR DNA-binding 99.7 3.7E-16 1.3E-20 113.1 12.0 81 53-135 12-96 (103)
248 1nu4_A U1A RNA binding domain; 99.7 6.8E-17 2.3E-21 115.7 8.0 81 53-133 5-90 (97)
249 1p1t_A Cleavage stimulation fa 99.7 8.5E-17 2.9E-21 116.7 8.6 80 54-133 6-89 (104)
250 3zzy_A Polypyrimidine tract-bi 99.7 2.4E-16 8.3E-21 116.8 11.0 80 53-133 25-107 (130)
251 1wf1_A RNA-binding protein RAL 99.7 2.2E-16 7.4E-21 115.7 10.7 96 119-222 5-101 (110)
252 1uaw_A Mouse-musashi-1; RNP-ty 99.7 5.2E-17 1.8E-21 111.0 6.8 76 142-218 1-76 (77)
253 2ek1_A RNA-binding protein 12; 99.7 5.5E-17 1.9E-21 115.7 7.1 78 53-130 12-93 (95)
254 2dgt_A RNA-binding protein 30; 99.7 2.1E-16 7.2E-21 111.9 10.1 75 260-341 8-82 (92)
255 2dnp_A RNA-binding protein 14; 99.7 2.2E-16 7.6E-21 111.2 10.2 75 260-341 7-81 (90)
256 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.8E-16 9.7E-21 122.7 11.8 86 138-223 36-121 (156)
257 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.3E-16 4.3E-21 125.9 9.8 133 188-340 11-151 (165)
258 2dis_A Unnamed protein product 99.7 1.8E-16 6E-21 116.1 9.9 85 139-223 6-94 (109)
259 2cpy_A RNA-binding protein 12; 99.7 9.1E-17 3.1E-21 118.5 8.4 81 52-133 11-95 (114)
260 1wg5_A Heterogeneous nuclear r 99.7 3.7E-16 1.3E-20 113.1 11.5 80 53-133 12-95 (104)
261 2cpd_A Apobec-1 stimulating pr 99.7 3.5E-16 1.2E-20 112.3 11.2 78 259-341 12-89 (99)
262 2dgu_A Heterogeneous nuclear r 99.7 2.2E-16 7.4E-21 114.3 10.1 75 260-341 9-83 (103)
263 1x5o_A RNA binding motif, sing 99.7 6.8E-16 2.3E-20 113.9 12.8 80 53-132 22-112 (114)
264 2nlw_A Eukaryotic translation 99.7 1.1E-16 3.8E-21 116.1 8.3 80 53-132 12-100 (105)
265 2e5j_A Methenyltetrahydrofolat 99.7 4.8E-16 1.6E-20 111.1 11.4 78 260-341 17-94 (97)
266 2dgw_A Probable RNA-binding pr 99.7 2.9E-16 1E-20 110.9 10.1 79 53-133 7-88 (91)
267 1x4b_A Heterogeneous nuclear r 99.7 2.1E-16 7.2E-21 117.0 9.8 83 53-136 24-110 (116)
268 1wez_A HnRNP H', FTP-3, hetero 99.7 2.8E-16 9.5E-21 113.1 10.0 80 52-133 11-93 (102)
269 2ki2_A SS-DNA binding protein 99.7 2.5E-17 8.6E-22 116.2 4.3 80 142-222 2-81 (90)
270 2cpi_A CCR4-NOT transcription 99.7 2.2E-16 7.7E-21 115.7 9.5 84 139-222 13-102 (111)
271 1nu4_A U1A RNA binding domain; 99.7 2E-16 6.7E-21 113.3 8.9 77 260-341 6-89 (97)
272 2jvr_A Nucleolar protein 3; RN 99.7 1.5E-16 5.1E-21 115.7 8.3 76 262-341 28-105 (111)
273 2krb_A Eukaryotic translation 99.7 9.4E-17 3.2E-21 110.7 7.0 71 57-127 2-81 (81)
274 2dis_A Unnamed protein product 99.7 3E-16 1E-20 114.8 10.1 81 54-134 6-94 (109)
275 1x4b_A Heterogeneous nuclear r 99.7 3.5E-16 1.2E-20 115.8 10.5 83 140-223 26-108 (116)
276 2cq2_A Hypothetical protein LO 99.7 2.5E-16 8.5E-21 114.1 9.3 77 54-132 23-106 (114)
277 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 3E-16 1E-20 120.4 10.3 82 137-218 59-140 (140)
278 2mss_A Protein (musashi1); RNA 99.7 1.2E-16 4.2E-21 108.4 7.2 71 58-129 1-75 (75)
279 2db1_A Heterogeneous nuclear r 99.7 1.4E-16 4.9E-21 118.0 8.1 79 53-132 14-98 (118)
280 2cqh_A IGF-II mRNA-binding pro 99.7 1.3E-16 4.6E-21 113.1 7.6 75 261-341 7-83 (93)
281 2cpy_A RNA-binding protein 12; 99.7 2.8E-16 9.6E-21 115.8 9.6 82 138-221 12-94 (114)
282 2kvi_A Nuclear polyadenylated 99.7 1.7E-16 5.9E-21 113.2 8.2 75 260-341 8-83 (96)
283 1x5o_A RNA binding motif, sing 99.7 4E-16 1.4E-20 115.1 10.4 83 138-221 22-112 (114)
284 2ki2_A SS-DNA binding protein 99.7 5.4E-17 1.8E-21 114.5 5.4 77 57-134 2-82 (90)
285 2cq4_A RNA binding motif prote 99.7 1.4E-16 5E-21 117.5 7.9 81 140-221 24-104 (114)
286 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.3E-16 4.5E-21 109.0 7.0 72 57-129 1-76 (77)
287 1x5p_A Negative elongation fac 99.7 7.7E-16 2.6E-20 110.0 11.2 74 261-341 14-87 (97)
288 2diu_A KIAA0430 protein; struc 99.7 3E-16 1E-20 107.6 8.4 72 261-340 7-83 (96)
289 1h2v_Z 20 kDa nuclear CAP bind 99.7 7.2E-16 2.5E-20 120.4 11.8 82 53-134 36-121 (156)
290 1wg1_A KIAA1579 protein, homol 99.7 2E-16 6.9E-21 110.9 7.6 77 54-133 3-79 (88)
291 1fjc_A Nucleolin RBD2, protein 99.7 1.8E-16 6.1E-21 113.2 7.4 81 53-134 13-93 (96)
292 2nlw_A Eukaryotic translation 99.7 2.6E-16 8.9E-21 114.2 8.3 82 138-221 12-100 (105)
293 2db1_A Heterogeneous nuclear r 99.7 5.3E-16 1.8E-20 114.9 10.2 80 139-220 15-97 (118)
294 2e5g_A U6 snRNA-specific termi 99.7 6.9E-16 2.3E-20 109.6 10.3 79 53-134 5-84 (94)
295 2hgl_A HNRPF protein, heteroge 99.7 3.6E-16 1.2E-20 118.0 9.3 80 139-220 42-124 (136)
296 2fc9_A NCL protein; structure 99.7 8.7E-16 3E-20 110.7 10.9 82 137-222 11-92 (101)
297 1fj7_A Nucleolin RBD1, protein 99.7 2.5E-16 8.7E-21 113.5 7.9 80 53-134 14-97 (101)
298 2hgl_A HNRPF protein, heteroge 99.7 2.2E-16 7.4E-21 119.3 7.8 79 52-131 40-124 (136)
299 2e5i_A Heterogeneous nuclear r 99.7 2.2E-15 7.5E-20 111.3 12.9 73 264-341 27-102 (124)
300 1wez_A HnRNP H', FTP-3, hetero 99.7 4.6E-16 1.6E-20 112.0 9.1 82 138-222 12-93 (102)
301 2fc8_A NCL protein; structure 99.7 1E-15 3.6E-20 110.5 11.0 82 52-136 11-96 (102)
302 2fc8_A NCL protein; structure 99.7 1.3E-15 4.6E-20 109.9 11.5 85 136-223 10-94 (102)
303 1wel_A RNA-binding protein 12; 99.6 3.1E-16 1E-20 117.5 8.3 79 53-132 22-104 (124)
304 1wg5_A Heterogeneous nuclear r 99.6 8E-16 2.7E-20 111.4 10.2 83 138-222 12-95 (104)
305 2cpx_A Hypothetical protein FL 99.6 2.4E-16 8.2E-21 116.6 7.4 87 138-224 22-108 (115)
306 1wel_A RNA-binding protein 12; 99.6 3E-16 1E-20 117.6 8.0 81 139-220 23-103 (124)
307 1fj7_A Nucleolin RBD1, protein 99.6 1E-16 3.5E-21 115.6 5.2 83 138-222 14-96 (101)
308 3beg_B Splicing factor, argini 99.6 6.7E-16 2.3E-20 113.9 9.7 76 54-132 14-94 (115)
309 2dnn_A RNA-binding protein 12; 99.6 5.1E-16 1.7E-20 112.7 8.7 77 53-131 13-92 (109)
310 2lmi_A GRSF-1, G-rich sequence 99.6 3.3E-16 1.1E-20 114.1 7.5 79 53-132 8-92 (107)
311 1wg1_A KIAA1579 protein, homol 99.6 4.4E-16 1.5E-20 109.1 7.8 74 262-341 5-78 (88)
312 1iqt_A AUF1, heterogeneous nuc 99.6 1.7E-16 5.7E-21 107.8 5.3 75 143-218 1-75 (75)
313 2krb_A Eukaryotic translation 99.6 1.6E-16 5.6E-21 109.5 5.3 72 142-215 2-80 (81)
314 2jwn_A Embryonic polyadenylate 99.6 9.1E-16 3.1E-20 115.0 9.6 79 55-134 35-117 (124)
315 3d2w_A TAR DNA-binding protein 99.6 7.5E-16 2.6E-20 107.9 8.5 76 53-133 8-85 (89)
316 2bz2_A Negative elongation fac 99.6 1.5E-15 5.2E-20 112.7 10.4 79 52-134 35-113 (121)
317 2lmi_A GRSF-1, G-rich sequence 99.6 4.1E-16 1.4E-20 113.5 7.0 81 138-220 8-91 (107)
318 2e44_A Insulin-like growth fac 99.6 1.8E-15 6.3E-20 107.9 10.1 76 261-341 14-92 (96)
319 2hzc_A Splicing factor U2AF 65 99.6 9.8E-16 3.4E-20 107.2 8.5 72 54-128 4-86 (87)
320 1sjr_A Polypyrimidine tract-bi 99.6 1.7E-15 5.7E-20 116.6 10.3 74 263-341 47-124 (164)
321 3zzy_A Polypyrimidine tract-bi 99.6 1.4E-15 4.7E-20 112.8 9.3 74 263-341 29-106 (130)
322 1iqt_A AUF1, heterogeneous nuc 99.6 4.1E-16 1.4E-20 105.9 5.7 71 58-129 1-75 (75)
323 2f3j_A RNA and export factor b 99.6 6.4E-15 2.2E-19 117.0 13.5 82 52-133 84-168 (177)
324 2dnn_A RNA-binding protein 12; 99.6 2.2E-15 7.4E-20 109.3 9.7 77 141-220 16-92 (109)
325 2j8a_A Histone-lysine N-methyl 99.6 1.1E-15 3.7E-20 111.0 8.0 80 142-221 3-96 (136)
326 1fjc_A Nucleolin RBD2, protein 99.6 1.3E-15 4.5E-20 108.7 8.3 81 137-222 12-92 (96)
327 3q2s_C Cleavage and polyadenyl 99.6 7.4E-16 2.5E-20 127.6 7.9 81 140-220 67-149 (229)
328 1wf0_A TDP-43, TAR DNA-binding 99.6 6.6E-16 2.3E-20 108.3 6.2 80 54-136 3-82 (88)
329 2hgn_A Heterogeneous nuclear r 99.6 3.8E-16 1.3E-20 118.3 5.3 123 95-222 2-124 (139)
330 2lcw_A RNA-binding protein FUS 99.4 5.1E-17 1.7E-21 120.3 0.0 86 138-223 4-97 (116)
331 2f3j_A RNA and export factor b 99.6 3.3E-15 1.1E-19 118.6 10.2 83 138-221 85-167 (177)
332 2bz2_A Negative elongation fac 99.6 2.8E-15 9.5E-20 111.3 9.1 75 260-341 37-111 (121)
333 2hgn_A Heterogeneous nuclear r 99.6 6.6E-16 2.3E-20 117.0 5.4 80 52-133 42-124 (139)
334 2xs2_A Deleted in azoospermia- 99.6 1.1E-15 3.6E-20 110.5 6.1 81 139-222 7-87 (102)
335 3beg_B Splicing factor, argini 99.6 2.6E-15 9E-20 110.6 8.3 72 262-339 16-92 (115)
336 3u1l_A PRE-mRNA-splicing facto 99.6 2.8E-15 9.7E-20 123.3 9.4 77 260-341 132-229 (240)
337 3egn_A RNA-binding protein 40; 99.6 1.5E-15 5.2E-20 116.8 7.2 86 138-223 42-132 (143)
338 2dha_A FLJ20171 protein; RRM d 99.6 2.5E-15 8.6E-20 111.3 7.9 79 140-220 22-104 (123)
339 2hzc_A Splicing factor U2AF 65 99.6 5.7E-15 1.9E-19 103.3 9.2 73 261-337 5-86 (87)
340 2hgm_A HNRPF protein, heteroge 99.6 2.5E-15 8.5E-20 111.6 7.4 79 52-132 38-121 (126)
341 2lcw_A RNA-binding protein FUS 99.4 1.1E-16 3.7E-21 118.6 0.0 83 53-135 4-98 (116)
342 2dha_A FLJ20171 protein; RRM d 99.6 1.8E-15 6.2E-20 112.1 6.4 77 54-131 21-104 (123)
343 3egn_A RNA-binding protein 40; 99.6 5.5E-15 1.9E-19 113.6 9.1 81 54-134 43-132 (143)
344 3q2s_C Cleavage and polyadenyl 99.6 3.3E-15 1.1E-19 123.7 8.2 78 55-132 67-150 (229)
345 2dit_A HIV TAT specific factor 99.6 2.3E-14 8E-19 105.1 11.8 83 52-134 11-104 (112)
346 3d2w_A TAR DNA-binding protein 99.6 8.9E-15 3E-19 102.4 9.1 74 260-340 9-83 (89)
347 2e5g_A U6 snRNA-specific termi 99.6 1.3E-14 4.4E-19 103.0 9.8 78 139-222 6-83 (94)
348 2pe8_A Splicing factor 45; RRM 99.6 1.2E-14 4.2E-19 104.7 9.6 79 53-131 5-93 (105)
349 2xs2_A Deleted in azoospermia- 99.6 2.9E-15 1E-19 108.1 6.3 79 53-133 6-87 (102)
350 2voo_A Lupus LA protein; RNA-b 99.6 2E-14 6.7E-19 115.9 11.5 116 103-220 63-186 (193)
351 2hgm_A HNRPF protein, heteroge 99.6 3.9E-15 1.3E-19 110.5 6.8 79 139-220 40-120 (126)
352 2pe8_A Splicing factor 45; RRM 99.6 2.2E-14 7.5E-19 103.3 10.2 82 139-220 6-93 (105)
353 3pgw_S U1-70K; protein-RNA com 99.6 4E-14 1.4E-18 128.2 14.1 80 54-133 100-183 (437)
354 2dnl_A Cytoplasmic polyadenyla 99.5 5.3E-14 1.8E-18 103.5 10.2 77 139-218 6-85 (114)
355 2dnl_A Cytoplasmic polyadenyla 99.5 2.2E-14 7.4E-19 105.6 7.8 74 53-129 5-85 (114)
356 3u1l_A PRE-mRNA-splicing facto 99.5 3E-14 1E-18 117.3 9.0 79 53-133 131-230 (240)
357 1wf0_A TDP-43, TAR DNA-binding 99.5 1.1E-14 3.9E-19 101.9 5.6 74 261-341 4-78 (88)
358 2j8a_A Histone-lysine N-methyl 99.5 2.4E-14 8.2E-19 104.0 6.9 74 57-130 3-94 (136)
359 3v4m_A Splicing factor U2AF 65 99.5 8.8E-14 3E-18 100.2 8.6 77 260-341 3-97 (105)
360 2voo_A Lupus LA protein; RNA-b 99.5 2.6E-13 8.8E-18 109.3 11.6 73 263-341 110-187 (193)
361 2dit_A HIV TAT specific factor 99.5 3E-13 1E-17 99.1 10.5 76 260-340 13-101 (112)
362 3v4m_A Splicing factor U2AF 65 99.5 3.1E-13 1.1E-17 97.4 9.5 82 139-220 3-96 (105)
363 3ue2_A Poly(U)-binding-splicin 99.5 2.9E-13 1E-17 99.3 9.1 81 140-220 19-108 (118)
364 3s6e_A RNA-binding protein 39; 99.4 5.8E-13 2E-17 97.0 9.5 79 53-131 4-92 (114)
365 3tht_A Alkylated DNA repair pr 99.4 5.2E-13 1.8E-17 115.9 9.9 79 259-339 15-97 (345)
366 3ue2_A Poly(U)-binding-splicin 99.4 6.3E-13 2.1E-17 97.6 8.1 77 55-131 19-108 (118)
367 2d9o_A DNAJ (HSP40) homolog, s 99.4 5.3E-12 1.8E-16 89.6 12.6 76 56-134 10-92 (100)
368 1jmt_A Splicing factor U2AF 35 99.4 1.9E-13 6.6E-18 98.3 4.6 72 146-218 20-103 (104)
369 3s6e_A RNA-binding protein 39; 99.4 1.5E-12 5E-17 94.9 8.3 76 261-341 6-93 (114)
370 3tht_A Alkylated DNA repair pr 99.4 1.7E-12 5.7E-17 112.7 8.7 76 53-130 15-97 (345)
371 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.3E-11 4.5E-16 87.5 11.1 72 263-341 11-90 (100)
372 1jmt_A Splicing factor U2AF 35 99.3 7.2E-13 2.5E-17 95.3 4.6 68 267-339 20-104 (104)
373 1owx_A Lupus LA protein, SS-B, 99.2 4.4E-11 1.5E-15 87.0 9.9 80 257-339 13-94 (121)
374 2dnr_A Synaptojanin-1; RRM dom 99.2 4.8E-11 1.6E-15 81.1 8.4 76 259-342 4-87 (91)
375 1owx_A Lupus LA protein, SS-B, 99.1 2.2E-10 7.5E-15 83.3 9.0 73 55-129 17-93 (121)
376 2dnr_A Synaptojanin-1; RRM dom 99.1 4.5E-10 1.6E-14 76.3 7.9 72 57-133 8-87 (91)
377 1ufw_A Synaptojanin 2; RNP dom 99.1 2.4E-10 8.2E-15 78.0 6.3 74 258-339 11-93 (95)
378 2l9w_A U4/U6 snRNA-associated- 98.9 7.7E-09 2.6E-13 71.8 9.0 70 263-337 22-96 (117)
379 1ufw_A Synaptojanin 2; RNP dom 98.9 3.2E-09 1.1E-13 72.5 5.3 70 56-130 15-93 (95)
380 3dxb_A Thioredoxin N-terminall 98.8 1E-08 3.5E-13 84.5 8.0 68 153-220 141-212 (222)
381 3dxb_A Thioredoxin N-terminall 98.8 1.4E-08 4.7E-13 83.7 7.1 62 275-341 142-213 (222)
382 2l9w_A U4/U6 snRNA-associated- 98.7 1.3E-07 4.3E-12 65.8 8.4 72 55-128 20-96 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.6 1E-06 3.4E-11 60.9 11.2 89 54-154 6-99 (104)
384 1wey_A Calcipressin 1; structu 98.4 1.6E-06 5.5E-11 60.2 7.8 75 263-342 6-85 (104)
385 2dhx_A Poly (ADP-ribose) polym 98.2 1.7E-05 5.8E-10 54.8 9.0 72 263-340 9-83 (104)
386 1whv_A Poly(A)-specific ribonu 98.1 2.2E-05 7.7E-10 53.5 8.2 60 50-114 10-69 (100)
387 1wey_A Calcipressin 1; structu 98.0 1.3E-05 4.5E-10 55.6 6.6 74 56-131 5-83 (104)
388 1uw4_A UPF3X; nonsense mediate 97.8 8.1E-05 2.8E-09 50.9 7.5 65 57-121 2-72 (91)
389 1whv_A Poly(A)-specific ribonu 97.6 0.00052 1.8E-08 46.8 9.2 54 263-321 17-70 (100)
390 1uw4_A UPF3X; nonsense mediate 97.5 0.00089 3E-08 45.7 9.3 68 142-209 2-71 (91)
391 1wwh_A Nucleoporin 35, nucleop 97.5 0.00052 1.8E-08 49.1 8.4 74 53-130 21-95 (119)
392 3ctr_A Poly(A)-specific ribonu 97.5 0.00017 5.7E-09 49.4 5.2 54 57-115 7-60 (101)
393 1wwh_A Nucleoporin 35, nucleop 97.3 0.0016 5.5E-08 46.5 9.0 68 263-337 25-93 (119)
394 3ctr_A Poly(A)-specific ribonu 97.2 0.00033 1.1E-08 47.9 4.0 54 263-321 7-60 (101)
395 2l08_A Regulator of nonsense t 97.2 0.00036 1.2E-08 47.9 4.0 66 56-121 9-80 (97)
396 2l08_A Regulator of nonsense t 96.9 0.0038 1.3E-07 42.8 7.2 67 142-208 10-78 (97)
397 3p3d_A Nucleoporin 53; structu 96.9 0.0009 3.1E-08 48.5 4.2 72 57-130 8-97 (132)
398 3pq1_A Poly(A) RNA polymerase; 96.7 0.00092 3.2E-08 60.1 3.9 55 56-112 53-107 (464)
399 3p3d_A Nucleoporin 53; structu 96.4 0.0074 2.5E-07 43.8 6.2 70 263-339 8-97 (132)
400 3pq1_A Poly(A) RNA polymerase; 95.3 0.011 3.7E-07 53.2 3.6 54 263-319 54-108 (464)
401 3d45_A Poly(A)-specific ribonu 94.0 0.17 5.9E-06 46.4 8.3 59 53-116 437-495 (507)
402 3d45_A Poly(A)-specific ribonu 85.9 3.6 0.00012 37.6 9.2 57 262-323 440-496 (507)
403 2g0c_A ATP-dependent RNA helic 75.8 8.1 0.00028 24.7 5.8 69 264-339 2-75 (76)
404 3ipq_A Oxysterols receptor LXR 71.2 0.87 3E-05 38.3 0.1 18 1-18 1-18 (283)
405 4eyt_A Telomerase associated p 64.8 27 0.00093 23.0 9.0 56 263-322 13-68 (129)
406 2g0c_A ATP-dependent RNA helic 52.9 24 0.00083 22.4 4.6 67 58-129 2-74 (76)
407 4e8u_A Putative uncharacterize 50.4 30 0.001 26.3 5.2 54 264-317 14-80 (172)
408 4e8u_A Putative uncharacterize 36.7 69 0.0023 24.3 5.3 49 58-107 14-75 (172)
409 3fry_A Probable copper-exporti 31.3 91 0.0031 19.0 6.2 54 263-319 7-60 (73)
410 3j21_T 50S ribosomal protein L 27.5 1.1E+02 0.0039 20.1 4.6 54 265-319 25-82 (86)
411 3lpe_A Putative transcription 24.3 1.6E+02 0.0054 19.5 5.9 45 278-323 28-73 (92)
412 4eyt_A Telomerase associated p 20.9 1.9E+02 0.0063 19.0 8.3 55 56-114 12-66 (129)
413 3fut_A Dimethyladenosine trans 20.5 90 0.0031 25.6 3.8 51 57-121 111-161 (271)
414 4a4j_A Pacszia, cation-transpo 20.0 1.5E+02 0.005 17.5 5.0 54 263-318 4-60 (69)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.3e-46 Score=326.08 Aligned_cols=238 Identities=20% Similarity=0.312 Sum_probs=216.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccccCC
Q 019152 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQ 134 (345)
Q Consensus 55 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 134 (345)
++++|||+|||.++|+++|+++|+.|| |.++.+ .+.+|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~---- 93 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV--DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP---- 93 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE--ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC----
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE--ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC----
Confidence 457899999999999999999999999 888887 5667899999999999999999999999999999999864
Q ss_pred CCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 019152 135 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (345)
Q Consensus 135 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~ 214 (345)
..++|||+|||.++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|++..+.|+.|.
T Consensus 94 -----~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 168 (284)
T 3smz_A 94 -----TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLY 168 (284)
T ss_dssp -----CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred -----CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 235999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEeccCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCccc-CHHHHHHHhhhcCceeeEE
Q 019152 215 CNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEV-TQLDLHRHFHSLGAGVIEE 293 (345)
Q Consensus 215 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~-t~~~L~~~f~~~G~~~i~~ 293 (345)
|.|+....... ...+.++|||+|||..+ ++++|+++|++|| .|..
T Consensus 169 v~~a~~~~~~~--------------------------------~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G--~i~~ 214 (284)
T 3smz_A 169 VHWTDAGQLTP--------------------------------ALLHSRCLCVDRLPPGFNDVDALCRALSAVH--SPTF 214 (284)
T ss_dssp EEECCGGGCCT--------------------------------TTTSCSEEEEECCCTTCCCHHHHHHHTCSSS--CCSE
T ss_pred EEECCCCCCCc--------------------------------ccCCccEEEEecCCcccCCHHHHHHHhhCCC--CeEE
Confidence 99986542210 11234789999999995 9999999999999 7888
Q ss_pred EeeeCC-----cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeecccc
Q 019152 294 VRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCGT 341 (345)
Q Consensus 294 v~i~~~-----~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~~ 341 (345)
+.+.++ +|+|||+|.+.++|.+|+..|||. .++|++|+|+|++..
T Consensus 215 v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~v~~a~~~ 264 (284)
T 3smz_A 215 CQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGL---SLGGSHLRVSFCAPG 264 (284)
T ss_dssp EEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTC---EETTEECEEEECCSS
T ss_pred EEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCC---ccCCeEEEEEEecCC
Confidence 888765 799999999999999999999999 999999999999753
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.4e-45 Score=320.87 Aligned_cols=243 Identities=14% Similarity=0.199 Sum_probs=207.2
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC--CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~--~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
.+.+.++|||+|||.++|+++|+++|+.||.|.+|.++.+. ++|||||+|.+.++|.+|+ .++|..+.|+.|.|.++
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~ 115 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAI-TKTHKVVGQNEIIVSHL 115 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEEEEC
Confidence 45678899999999999999999999999999999999865 3589999999999999999 59999999999999986
Q ss_pred cccCCCCCCCCceeEEECCCCccCCHHHHHHHhccCC-CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 019152 130 YASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYP-SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 208 (345)
Q Consensus 130 ~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~ 208 (345)
. .++|||+|||..+++++|+++|+.|| .|..+.++.++. |.++|||||+|.+.++|.+|+..|++..+
T Consensus 116 ~----------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 184 (292)
T 2ghp_A 116 T----------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKI 184 (292)
T ss_dssp C----------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred C----------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEe
Confidence 2 46999999999999999999999999 999999998854 78999999999999999999999999999
Q ss_pred CCeeEEEEeccCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcc-cCHHHHHHHhhhcC
Q 019152 209 GSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPE-VTQLDLHRHFHSLG 287 (345)
Q Consensus 209 ~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~-~t~~~L~~~f~~~G 287 (345)
.|+.|.|.++.+....... .....+.++|||+|||.. +++++|+++|++||
T Consensus 185 ~g~~l~v~~a~~~~~~~~~----------------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G 236 (292)
T 2ghp_A 185 EGYTLVTKVSNPLEKSKRT----------------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFG 236 (292)
T ss_dssp TTEECEEEECCCC-------------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGS
T ss_pred CCcEEEEEECCCCcccccc----------------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccC
Confidence 9999999998754322111 012234479999999999 99999999999999
Q ss_pred ceeeEEEeeeCC-------cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeeccc
Q 019152 288 AGVIEEVRVQRD-------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCG 340 (345)
Q Consensus 288 ~~~i~~v~i~~~-------~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~ 340 (345)
.|..+.+.++ +|+|||+|.+.++|.+|+ .|||. .++|++|+|+|++.
T Consensus 237 --~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~---~~~g~~i~V~~a~~ 290 (292)
T 2ghp_A 237 --SIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRS---LLGNREISVSLADK 290 (292)
T ss_dssp --CEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTE---EETTEEEEEEECCC
T ss_pred --CeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCC---EECCcEEEEEEecC
Confidence 7899988653 689999999999999999 99999 99999999999975
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-34 Score=226.35 Aligned_cols=162 Identities=41% Similarity=0.796 Sum_probs=151.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC---CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccccC
Q 019152 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASG 133 (345)
Q Consensus 57 ~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~---~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 133 (345)
|+|||+|||.++|+++|+++|+.||.|.++.++.++. +|||||+|.+.++|.+|+..++|..+.|+.+.|.++.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 5899999999999999999999999999999987763 5899999999999999999999999999999999997665
Q ss_pred CCCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeE
Q 019152 134 QREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213 (345)
Q Consensus 134 ~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i 213 (345)
. ....+.++|||+|||..+++++|+++|+.||.|..+.+..++.+|.++|+|||+|.+.++|.+|+..|++..++|+.|
T Consensus 81 ~-~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i 159 (166)
T 3md3_A 81 Q-SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPL 159 (166)
T ss_dssp C-CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred C-CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEE
Confidence 4 334456799999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred EEEecc
Q 019152 214 RCNWAT 219 (345)
Q Consensus 214 ~v~~~~ 219 (345)
.|.|++
T Consensus 160 ~v~~a~ 165 (166)
T 3md3_A 160 RINWAA 165 (166)
T ss_dssp EEEESC
T ss_pred EEEecC
Confidence 999985
No 4
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=4e-34 Score=236.69 Aligned_cols=166 Identities=28% Similarity=0.529 Sum_probs=147.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
..+.++|||+|||.++|+++|+++|+.||.|.+|++++++. +|||||+|.+.++|.+|+..+++..+.|+.+++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34568999999999999999999999999999999998753 47999999999999999999999999999999998
Q ss_pred ccccCCCCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 019152 129 AYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 208 (345)
Q Consensus 129 ~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~ 208 (345)
+........ ....+|||+|||.++++++|+++|+.||.|..++++++. +.++|||||+|.+.++|.+|++.|+|..+
T Consensus 92 ~~~~~~~~~-~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~ 168 (213)
T 4f02_A 92 SQRDPSLRK-SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLL 168 (213)
T ss_dssp CCCCTHHHH-HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred ccccccccc-cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 865543222 233589999999999999999999999999999999884 45799999999999999999999999999
Q ss_pred CCeeEEEEeccCC
Q 019152 209 GSRQIRCNWATKG 221 (345)
Q Consensus 209 ~~~~i~v~~~~~~ 221 (345)
+|+.|.|.++.++
T Consensus 169 ~g~~i~V~~a~~~ 181 (213)
T 4f02_A 169 NDRKVFVGRFKSR 181 (213)
T ss_dssp TTEECEEEECCCH
T ss_pred CCEEEEEEEcCCC
Confidence 9999999998754
No 5
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.2e-33 Score=233.75 Aligned_cols=164 Identities=27% Similarity=0.443 Sum_probs=146.5
Q ss_pred CCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 019152 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (345)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 218 (345)
.+.++|||+|||.++++++|+++|++||.|.++++++++.++.++|||||+|.+.++|.+|++.+++..+.|+.+++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 34579999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred cCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeC
Q 019152 219 TKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR 298 (345)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~ 298 (345)
........ ...++|||+|||..+++++|+++|++|| .|..+++.+
T Consensus 93 ~~~~~~~~---------------------------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G--~i~~~~i~~ 137 (213)
T 4f02_A 93 QRDPSLRK---------------------------------SGVGNIFIKNLDKSIDNKALYDTFSAFG--NILSCKVVC 137 (213)
T ss_dssp CCCTHHHH---------------------------------HCTTEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEE
T ss_pred cccccccc---------------------------------cccccceECCcccccHHHHHHHHHhhcC--CeEEEEeec
Confidence 54321100 0115799999999999999999999999 789998875
Q ss_pred C----cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeeccc
Q 019152 299 D----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCG 340 (345)
Q Consensus 299 ~----~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~ 340 (345)
+ +|+|||+|.+.++|.+|++.|||. .|+|++|+|.|++.
T Consensus 138 d~~~~~g~~fV~f~~~~~a~~Ai~~lng~---~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 138 DENGSKGYGFVHFETQEAAERAIEKMNGM---LLNDRKVFVGRFKS 180 (213)
T ss_dssp ETTEEEEEEEEEESSHHHHHHHHHHHTTC---EETTEECEEEECCC
T ss_pred cCCCCceEEEEEeCCHHHHHHHHHHhCCC---EECCEEEEEEEcCC
Confidence 4 789999999999999999999999 99999999999864
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=6.3e-33 Score=221.24 Aligned_cols=161 Identities=27% Similarity=0.483 Sum_probs=149.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecc
Q 019152 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (345)
Q Consensus 55 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (345)
++++|||+|||.++++++|+++|+.||+|.++.++.++. +|||||+|.+.++|.+|+..++|..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 458899999999999999999999999999999998763 5899999999999999999999999999999999997
Q ss_pred ccCCCCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 019152 131 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210 (345)
Q Consensus 131 ~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~ 210 (345)
+... ....++|||+|||..+++++|+++|++||.|..+.+.+++.++.++|+|||+|.+.++|.+|++.|++..+.|
T Consensus 82 ~~~~---~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 82 PGGE---SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp CCSS---TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred CCcc---cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 6553 3445799999999999999999999999999999999998789999999999999999999999999999977
Q ss_pred --eeEEEEec
Q 019152 211 --RQIRCNWA 218 (345)
Q Consensus 211 --~~i~v~~~ 218 (345)
++|.|.||
T Consensus 159 ~~~~l~V~~A 168 (168)
T 1b7f_A 159 GSQPLSVRLA 168 (168)
T ss_dssp CSSCCEEEEC
T ss_pred CCeEEEEEeC
Confidence 99999885
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=6.4e-33 Score=230.43 Aligned_cols=169 Identities=23% Similarity=0.439 Sum_probs=152.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 54 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
.+.++|||+|||.++|+++|+++|+.||.|.+|.++.++ .+|||||+|.+.++|.+|+..|+|..+.|+.|.|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 346789999999999999999999999999999998765 5789999999999999999999999999999999987
Q ss_pred cccCCCC--------CCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHH
Q 019152 130 YASGQRE--------DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 201 (345)
Q Consensus 130 ~~~~~~~--------~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 201 (345)
....... .....++|||+|||.++++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|.+|+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 185 (216)
T 2qfj_A 106 SNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVS 185 (216)
T ss_dssp SCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHH
Confidence 6554221 22445799999999999999999999999999999999998899999999999999999999999
Q ss_pred HhCCceeCCeeEEEEeccCCC
Q 019152 202 DLTGKWLGSRQIRCNWATKGA 222 (345)
Q Consensus 202 ~l~~~~~~~~~i~v~~~~~~~ 222 (345)
.|++..++|+.|.|.|+....
T Consensus 186 ~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 186 SMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HHTTCBCSSSBCEEEECSSCS
T ss_pred HccCCEeCCcEEEEEEecCCC
Confidence 999999999999999997754
No 8
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=2.2e-32 Score=217.76 Aligned_cols=160 Identities=33% Similarity=0.541 Sum_probs=147.4
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccc
Q 019152 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (345)
Q Consensus 56 ~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (345)
.++|||+|||.++++++|+++|+.||.|.++.++.++. +|||||+|.+.++|.+|+..|+|..+.|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57899999999999999999999999999999998763 37999999999999999999999999999999999976
Q ss_pred cCCCCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 019152 132 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR 211 (345)
Q Consensus 132 ~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~ 211 (345)
... .....+|||+|||..+++++|+++|+.||.|..+.+..+..+|.++|+|||+|.+.++|.+|++.|+|..+.|+
T Consensus 82 ~~~---~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 82 SSA---SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp CCG---GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred Ccc---cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 543 23456899999999999999999999999999999999988899999999999999999999999999999996
Q ss_pred e--EEEEec
Q 019152 212 Q--IRCNWA 218 (345)
Q Consensus 212 ~--i~v~~~ 218 (345)
. |.|.||
T Consensus 159 ~~~i~v~~A 167 (167)
T 1fxl_A 159 TEPITVKFA 167 (167)
T ss_dssp SSCCEEEEC
T ss_pred ccceEEEeC
Confidence 5 888875
No 9
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=2.2e-32 Score=223.68 Aligned_cols=171 Identities=19% Similarity=0.369 Sum_probs=147.8
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEe
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (345)
.+...++|||+|||.++|+++|+++|+.||.|.+|.++.++. +|||||+|.+.++|.+|+.. ++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 356789999999999999999999999999999999998764 57999999999999999965 8999999999999
Q ss_pred eccccCCCC---CCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhC
Q 019152 128 WAYASGQRE---DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT 204 (345)
Q Consensus 128 ~~~~~~~~~---~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 204 (345)
++....... .....++|||+|||.++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+.. +
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~ 166 (196)
T 1l3k_A 88 RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-K 166 (196)
T ss_dssp ECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-S
T ss_pred cccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-C
Confidence 987654322 223457999999999999999999999999999999999988899999999999999999999986 7
Q ss_pred CceeCCeeEEEEeccCCCCC
Q 019152 205 GKWLGSRQIRCNWATKGAGN 224 (345)
Q Consensus 205 ~~~~~~~~i~v~~~~~~~~~ 224 (345)
+..+.|+.|.|.|+.++...
T Consensus 167 ~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 167 YHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp CCEETTEECEEEECC-----
T ss_pred CcEECCEEEEEEecCChhHh
Confidence 99999999999999876543
No 10
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=3.1e-32 Score=217.21 Aligned_cols=159 Identities=31% Similarity=0.480 Sum_probs=145.5
Q ss_pred CceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 019152 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (345)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 219 (345)
++++|||+|||.++++++|+++|+.||.|..+.+++++.+|.++|||||+|.+.++|.+|++.|++..+.|+.|.|.|+.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred CCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC
Q 019152 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 299 (345)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~ 299 (345)
+... ..+.++|+|+|||..+++++|+++|++|| .|..+.+.++
T Consensus 82 ~~~~-----------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G--~i~~~~i~~~ 124 (168)
T 1b7f_A 82 PGGE-----------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYG--SIVQKNILRD 124 (168)
T ss_dssp CCSS-----------------------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSS--CEEEEEEEEC
T ss_pred CCcc-----------------------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCC--cEEEEEEEEc
Confidence 5421 11237899999999999999999999999 7888888765
Q ss_pred ------cceEEEEeCCHHHHHHHHHhhCCCCccccCC--ceEEEeec
Q 019152 300 ------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFG--KQMKHDAM 338 (345)
Q Consensus 300 ------~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g--~~l~v~~~ 338 (345)
+|+|||+|.+.++|.+|+..|||. .+.| ++|+|+||
T Consensus 125 ~~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 125 KLTGRPRGVAFVRYNKREEAQEAISALNNV---IPEGGSQPLSVRLA 168 (168)
T ss_dssp TTTCCEEEEEEEEESSHHHHHHHHHHHTTC---CCTTCSSCCEEEEC
T ss_pred CCCCCcceEEEEEECCHHHHHHHHHHhcCC---EecCCCeEEEEEeC
Confidence 489999999999999999999999 8977 99999996
No 11
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-32 Score=215.60 Aligned_cols=160 Identities=23% Similarity=0.432 Sum_probs=143.5
Q ss_pred eeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCC
Q 019152 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (345)
Q Consensus 142 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 221 (345)
++|||+|||.++++++|+++|+.||.|.++.++.++ ++.++|||||+|.+.++|.+|+..+++..+.|+.+.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 479999999999999999999999999999999885 5789999999999999999999999999999999999998654
Q ss_pred CCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC--
Q 019152 222 AGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-- 299 (345)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~-- 299 (345)
... ...+.++|+|+|||..+++++|+++|++|| .|..+.+..+
T Consensus 80 ~~~---------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G--~i~~~~i~~~~~ 124 (166)
T 3md3_A 80 QQS---------------------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFP--SYLSGHVMWDMQ 124 (166)
T ss_dssp CCC---------------------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTST--TEEEEEEEECTT
T ss_pred CCC---------------------------------CCCCCceEEECCCCCCCCHHHHHHHHhccC--CeeEEEEEecCC
Confidence 321 112347899999999999999999999999 7888888754
Q ss_pred ----cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeeccc
Q 019152 300 ----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCG 340 (345)
Q Consensus 300 ----~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~ 340 (345)
+|+|||+|.+.++|.+|+..|||. .++|++|+|+||+.
T Consensus 125 ~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 125 TGSSRGYGFVSFTSQDDAQNAMDSMQGQ---DLNGRPLRINWAAK 166 (166)
T ss_dssp TCCEEEEEEEEESCHHHHHHHHHHHTTC---EETTEECEEEESCC
T ss_pred CCCcceEEEEEeCCHHHHHHHHHHhCCC---ccCCcEEEEEecCC
Confidence 689999999999999999999999 99999999999863
No 12
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=4.8e-32 Score=217.59 Aligned_cols=162 Identities=23% Similarity=0.393 Sum_probs=144.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC------CCCeEEEEEeCHHHHHHHHHHhCCCccC---CCceE
Q 019152 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD------KSSYGFIHYFDRRSAAMAILSLNGRHLF---GQPIK 125 (345)
Q Consensus 55 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~------~~~~afv~f~~~~~A~~a~~~l~~~~~~---g~~l~ 125 (345)
+.++|||+|||+++|+++|+++|+.||+|.++.++.++ .+|||||+|.+.++|.+|+..|+|..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999999875 3479999999999999999999998776 56777
Q ss_pred EeeccccCCCCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCC
Q 019152 126 VNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG 205 (345)
Q Consensus 126 v~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~ 205 (345)
+.++..... .....++|||+|||.++++++|+++|+.||.|..+.+.++. +|.++|||||+|.+.++|.+|++.|+|
T Consensus 82 ~~~~~~~~~--~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 3nmr_A 82 MKPADSEKN--NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQ 158 (175)
T ss_dssp EEECGGGCC--SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred Ecccccccc--ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcC
Confidence 777655433 34456799999999999999999999999999999999884 689999999999999999999999999
Q ss_pred ceeC---CeeEEEEecc
Q 019152 206 KWLG---SRQIRCNWAT 219 (345)
Q Consensus 206 ~~~~---~~~i~v~~~~ 219 (345)
..+. +++|.|.|+.
T Consensus 159 ~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 159 AQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp SCCCTTCSSCCEEEECC
T ss_pred CcccCCCCCCeEEEecC
Confidence 8765 4999999974
No 13
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=7.8e-32 Score=214.62 Aligned_cols=158 Identities=28% Similarity=0.446 Sum_probs=143.6
Q ss_pred ceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 019152 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (345)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 220 (345)
+++|||+|||.++++++|+++|+.||.|..+.+++++.+|.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 47999999999999999999999999999999999988999999999999999999999999999999999999999865
Q ss_pred CCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC-
Q 019152 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD- 299 (345)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~- 299 (345)
.... ...++|+|+|||..+++++|+++|++|| .|..+.+..+
T Consensus 82 ~~~~-----------------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G--~i~~~~i~~~~ 124 (167)
T 1fxl_A 82 SSAS-----------------------------------IRDANLYVSGLPKTMTQKELEQLFSQYG--RIITSRILVDQ 124 (167)
T ss_dssp CCGG-----------------------------------GTTCEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEEECT
T ss_pred Cccc-----------------------------------CCCCcEEECCCCCcCCHHHHHHHHHhcC--CEeEEEEEecC
Confidence 3210 1226899999999999999999999999 7888888754
Q ss_pred -----cceEEEEeCCHHHHHHHHHhhCCCCccccCCce--EEEeec
Q 019152 300 -----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ--MKHDAM 338 (345)
Q Consensus 300 -----~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~--l~v~~~ 338 (345)
+|+|||+|.+.++|.+|++.|||. .++|+. |+|+||
T Consensus 125 ~~g~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 125 VTGVSRGVGFIRFDKRIEAEEAIKGLNGQ---KPSGATEPITVKFA 167 (167)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHHTTC---CCTTCSSCCEEEEC
T ss_pred CCCCccceEEEEeCCHHHHHHHHHHhcCC---ccCCCccceEEEeC
Confidence 689999999999999999999999 899965 999986
No 14
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=9e-32 Score=225.08 Aligned_cols=196 Identities=21% Similarity=0.328 Sum_probs=152.5
Q ss_pred CCCceeEEECCCCc-cCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 019152 138 TSGHFNIFVGDLSP-EVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (345)
Q Consensus 138 ~~~~~~l~v~~lp~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~ 216 (345)
..++++|||+|||. ++++++|+++|+.||.|..+++++++ +|||||+|.+.++|.+|++.|++..+.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45568999999999 99999999999999999999999763 6899999999999999999999999999999999
Q ss_pred eccCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEee
Q 019152 217 WATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRV 296 (345)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i 296 (345)
++.........................................++.++|||+|||..+++++|+++|++|| ..|..+.+
T Consensus 106 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G-~~i~~v~i 184 (229)
T 2adc_A 106 LSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG-GVVKGFKF 184 (229)
T ss_dssp CCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTS-CCEEEEEE
T ss_pred EecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcC-CCeeEEEE
Confidence 98765432222111111111111111111111111111123345679999999999999999999999998 25888888
Q ss_pred -eCCcceEEEEeCCHHHHHHHHHhhCCCCccccC-CceEEEeeccccc
Q 019152 297 -QRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLF-GKQMKHDAMCGTL 342 (345)
Q Consensus 297 -~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~-g~~l~v~~~~~~~ 342 (345)
.+++|+|||+|.+.++|.+|+..|||. .++ |++|+|+|++..+
T Consensus 185 ~~~~~g~afV~f~~~~~A~~Ai~~l~g~---~~~~g~~l~v~~a~~~i 229 (229)
T 2adc_A 185 FQKDRKMALIQMGSVEEAVQALIDLHNH---DLGENHHLRVSFSKSTI 229 (229)
T ss_dssp CSSSTTCEEEEESSHHHHHHHHHHHTTC---BSSSSCBCEEEECSSCC
T ss_pred EECCCcEEEEEECCHHHHHHHHHHHCCC---ccCCCCeEEEEEecCCC
Confidence 447999999999999999999999999 899 9999999998753
No 15
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=5.3e-32 Score=216.72 Aligned_cols=159 Identities=23% Similarity=0.449 Sum_probs=144.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcc----C-------CceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCc
Q 019152 55 TCRSVYVGNIHTQVTEPLLQEVFSST----G-------PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQP 123 (345)
Q Consensus 55 ~~~~l~v~~lp~~~t~~~l~~~f~~~----G-------~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~ 123 (345)
+.++|||+|||.++|+++|+++|+.| | .|.++.+.+ ++|||||+|.+.++|.+|+ .++|..+.|+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~ 79 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 79 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET--TTTEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC--CCCEEEEEeCCHHHHHHHH-HhCCcEecCce
Confidence 56899999999999999999999999 6 677776654 4689999999999999999 89999999999
Q ss_pred eEEeeccccCCCCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHh
Q 019152 124 IKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 203 (345)
Q Consensus 124 l~v~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l 203 (345)
++|.++..... ....++|||+|||..+++++|+++|++||.|..+.+..++.+|.++|+|||+|.+.++|.+|++.|
T Consensus 80 i~v~~~~~~~~---~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 156 (172)
T 2g4b_A 80 LKIRRPHDYQP---LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 156 (172)
T ss_dssp CEEECCSSCCC---CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHH
T ss_pred eeecCCcccCC---CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHc
Confidence 99998765432 234579999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCceeCCeeEEEEecc
Q 019152 204 TGKWLGSRQIRCNWAT 219 (345)
Q Consensus 204 ~~~~~~~~~i~v~~~~ 219 (345)
++..++|+.|.|.|+.
T Consensus 157 ~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 157 NGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTCEETTEECEEEECC
T ss_pred CCCEECCeEEEEEeCC
Confidence 9999999999999973
No 16
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=1.7e-31 Score=218.74 Aligned_cols=193 Identities=21% Similarity=0.310 Sum_probs=151.8
Q ss_pred ceeEEECCCCc-cCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 019152 141 HFNIFVGDLSP-EVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (345)
Q Consensus 141 ~~~l~v~~lp~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 219 (345)
+++|||+|||. ++++++|+++|+.||.|..+++++++ +|||||+|.+.++|.+|+..|++..+.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 47999999999 99999999999999999999998663 6799999999999999999999999999999999987
Q ss_pred CCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeC-
Q 019152 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR- 298 (345)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~- 298 (345)
........................................++.++|+|+|||..+++++|+++|++|| ..|..+.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~~v~~v~i~~~ 156 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG-GVVKGFKFFQK 156 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTT-SCCCEEEESST
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcC-CCceEEEEEeC
Confidence 65433222111111111111111111111122222233446779999999999999999999999998 2588888844
Q ss_pred CcceEEEEeCCHHHHHHHHHhhCCCCccccC-CceEEEeeccccc
Q 019152 299 DKGFGFVRYSTHAEAALAIQMGNTTQSSYLF-GKQMKHDAMCGTL 342 (345)
Q Consensus 299 ~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~-g~~l~v~~~~~~~ 342 (345)
++|+|||+|.+.++|.+|+..|||. .++ |++|+|+|++..+
T Consensus 157 ~~g~afV~f~~~~~A~~A~~~l~g~---~~~~g~~l~v~~a~~~i 198 (198)
T 1qm9_A 157 DRKMALIQMGSVEEAVQALIDLHNH---DLGENHHLRVSFSKSTI 198 (198)
T ss_dssp TSSCEEEECSSHHHHHHHHHHHTSS---CCSSCCSCCEEEECCCC
T ss_pred CCcEEEEEeCCHHHHHHHHHHhcCC---ccCCCCeEEEEeecccC
Confidence 6899999999999999999999999 899 9999999998753
No 17
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.98 E-value=1.9e-31 Score=218.54 Aligned_cols=165 Identities=22% Similarity=0.418 Sum_probs=146.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcc----C-------CceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCc
Q 019152 55 TCRSVYVGNIHTQVTEPLLQEVFSST----G-------PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQP 123 (345)
Q Consensus 55 ~~~~l~v~~lp~~~t~~~l~~~f~~~----G-------~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~ 123 (345)
.+++|||+|||.++|+++|+++|+.| | .|.++.+. +.+|||||+|.+.++|.+|+ .|+|..+.|+.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~--~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~ 79 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN--QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQS 79 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE--TTTTEEEEEESCSHHHHHHG-GGTTEEETTEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec--CCCCEEEEEeCCHHHHHHHH-HhcCCEEcCce
Confidence 46899999999999999999999999 5 56666553 45689999999999999999 89999999999
Q ss_pred eEEeeccccCCC-----------------CCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEE
Q 019152 124 IKVNWAYASGQR-----------------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFG 186 (345)
Q Consensus 124 l~v~~~~~~~~~-----------------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~ 186 (345)
|+|.++...... ....+.++|||+|||..+++++|+++|+.||.|..+.+..++.+|.++|||
T Consensus 80 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~a 159 (198)
T 2yh0_A 80 LKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYA 159 (198)
T ss_dssp EEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEE
T ss_pred EEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEE
Confidence 999998654221 112456899999999999999999999999999999999998889999999
Q ss_pred EEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCCC
Q 019152 187 FVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 222 (345)
Q Consensus 187 fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 222 (345)
||+|.+.++|.+|+..|++..++|+.|.|.|+.++.
T Consensus 160 fV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 160 FCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred EEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 999999999999999999999999999999997754
No 18
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.98 E-value=1.3e-31 Score=219.10 Aligned_cols=161 Identities=16% Similarity=0.186 Sum_probs=139.0
Q ss_pred CcceEEEeCCC-CCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccccC
Q 019152 55 TCRSVYVGNIH-TQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASG 133 (345)
Q Consensus 55 ~~~~l~v~~lp-~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 133 (345)
++++|||+||| ..+++++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|+..|||..+.|+.|+|.++....
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA 81 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCc
Confidence 45789999999 899999999999999999999998764 6899999999999999999999999999999999985322
Q ss_pred CC----------------------------------CCCCCceeEEECCCCccCCHHHHHHHhccCCCc--ceeEeeecC
Q 019152 134 QR----------------------------------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC--SDARVMWDQ 177 (345)
Q Consensus 134 ~~----------------------------------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v--~~~~~~~~~ 177 (345)
.. ....++.+|||+|||.++++++|+++|+.||.| ..++++.+.
T Consensus 82 ~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~ 161 (205)
T 3tyt_A 82 IMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK 161 (205)
T ss_dssp CCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC
T ss_pred cCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC
Confidence 10 001235689999999999999999999999998 888888663
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe----eEEEEec
Q 019152 178 KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR----QIRCNWA 218 (345)
Q Consensus 178 ~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~----~i~v~~~ 218 (345)
+..+|+|||+|.+.++|.+|+..||+..+.|+ ++.|.++
T Consensus 162 --~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 162 --SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp --SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred --CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 45679999999999999999999999999776 4665553
No 19
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.98 E-value=3.3e-32 Score=216.85 Aligned_cols=161 Identities=25% Similarity=0.405 Sum_probs=146.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecc
Q 019152 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (345)
Q Consensus 55 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (345)
++++|||+|||.++|+++|+++|+.||.|.+|.++.++ ++|||||+|.+.++|.+|+.. +..+.|+.+.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 46899999999999999999999999999999998874 368999999999999999974 678999999999886
Q ss_pred ccCCCCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 019152 131 ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210 (345)
Q Consensus 131 ~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~ 210 (345)
+... .....+|||+|||.++++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|.+|++ +++..+.|
T Consensus 80 ~~~~---~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g 155 (167)
T 2cjk_A 80 PRDE---QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKD 155 (167)
T ss_dssp CHHH---HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSS
T ss_pred chhh---ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCC
Confidence 5432 2235699999999999999999999999999999999998889999999999999999999998 89999999
Q ss_pred eeEEEEeccCC
Q 019152 211 RQIRCNWATKG 221 (345)
Q Consensus 211 ~~i~v~~~~~~ 221 (345)
+.|.|.|+.++
T Consensus 156 ~~i~V~~a~pk 166 (167)
T 2cjk_A 156 RKIEIKRAEPR 166 (167)
T ss_dssp SCEEEEECCCC
T ss_pred eEEEEeecCCC
Confidence 99999998764
No 20
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.98 E-value=3.9e-31 Score=212.25 Aligned_cols=160 Identities=25% Similarity=0.373 Sum_probs=140.6
Q ss_pred CceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCC--CcccEEEEEeCCHHHHHHHHHHhCCceeC---CeeEE
Q 019152 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTG--RSRGFGFVSFRNQQDAQSAINDLTGKWLG---SRQIR 214 (345)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~--~~~g~~fv~f~~~~~a~~a~~~l~~~~~~---~~~i~ 214 (345)
++++|||+|||.++++++|+++|+.||.|..+++++++.++ .++|||||+|.+.++|.+|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 45799999999999999999999999999999999997776 89999999999999999999999998765 67788
Q ss_pred EEeccCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEE
Q 019152 215 CNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEV 294 (345)
Q Consensus 215 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v 294 (345)
+.++...... ....++|||+|||.++|+++|+++|++|| .|..+
T Consensus 82 ~~~~~~~~~~----------------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G--~i~~v 125 (175)
T 3nmr_A 82 MKPADSEKNN----------------------------------AVEDRKLFIGMISKKCTENDIRVMFSSFG--QIEEC 125 (175)
T ss_dssp EEECGGGCCS----------------------------------CGGGSEEEEESCCTTCCHHHHHHHHGGGS--CEEEE
T ss_pred Eccccccccc----------------------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCC--CEEEE
Confidence 7776543221 11237899999999999999999999999 78999
Q ss_pred eeeCC-----cceEEEEeCCHHHHHHHHHhhCCCCccccC---CceEEEeec
Q 019152 295 RVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLF---GKQMKHDAM 338 (345)
Q Consensus 295 ~i~~~-----~~~afV~f~~~~~A~~Al~~l~~~~~~~~~---g~~l~v~~~ 338 (345)
.+.++ +|+|||+|.+.++|.+|++.|||. .+. |++|+|+||
T Consensus 126 ~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~---~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 126 RILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQA---QTMEGCSSPMVVKFA 174 (175)
T ss_dssp EEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTS---CCCTTCSSCCEEEEC
T ss_pred EEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCC---cccCCCCCCeEEEec
Confidence 98765 789999999999999999999998 554 499999997
No 21
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.98 E-value=5.7e-31 Score=220.24 Aligned_cols=163 Identities=20% Similarity=0.337 Sum_probs=145.2
Q ss_pred CCCcceEEEeCCCC-CCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccc
Q 019152 53 PSTCRSVYVGNIHT-QVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (345)
Q Consensus 53 ~~~~~~l~v~~lp~-~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (345)
..++++|||+|||. ++++++|+++|+.||.|.+|.++.++ +|||||+|.+.++|.+|+..|+|..+.|+.|.|.++..
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 45678999999999 99999999999999999999999887 68999999999999999999999999999999999875
Q ss_pred cCCC--------------------------------CCCCCceeEEECCCCccCCHHHHHHHhccCC-CcceeEeeecCC
Q 019152 132 SGQR--------------------------------EDTSGHFNIFVGDLSPEVTDATLFACFSVYP-SCSDARVMWDQK 178 (345)
Q Consensus 132 ~~~~--------------------------------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g-~v~~~~~~~~~~ 178 (345)
.... ....++++|||+|||..+++++|+++|+.|| .|..++++.+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-- 187 (229)
T 2adc_A 110 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-- 187 (229)
T ss_dssp CCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS--
T ss_pred ccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC--
Confidence 4210 0123357899999999999999999999999 9999988642
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceeC-CeeEEEEeccCC
Q 019152 179 TGRSRGFGFVSFRNQQDAQSAINDLTGKWLG-SRQIRCNWATKG 221 (345)
Q Consensus 179 ~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~-~~~i~v~~~~~~ 221 (345)
.+|+|||+|.+.++|.+|+..|++..+. |+.|.|.|++++
T Consensus 188 ---~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 188 ---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp ---STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred ---CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 3689999999999999999999999999 999999998753
No 22
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.98 E-value=6.6e-32 Score=224.32 Aligned_cols=172 Identities=22% Similarity=0.430 Sum_probs=145.5
Q ss_pred ceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 019152 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (345)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 220 (345)
.++|||+|||.++++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.++..
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 46899999999999999999999999999999999988899999999999999999999999999999999999988654
Q ss_pred CCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC-
Q 019152 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD- 299 (345)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~- 299 (345)
....... ..... ......++|||+|||.++++++|+++|++|| .|..+.+.++
T Consensus 108 ~~~~~~~--------~~~~~----------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G--~v~~v~i~~~~ 161 (216)
T 2qfj_A 108 IGQAQPI--------IDQLA----------------EEARAFNRIYVASVHQDLSDDDIKSVFEAFG--KIKSATLARDP 161 (216)
T ss_dssp CGGGHHH--------HHHHH----------------HHHTTSCEEEEECCCTTCCHHHHHHHHTTSS--CEEEEEEEECT
T ss_pred ccccchh--------hhhhh----------------cccCCCcEEEEeCCCCcCCHHHHHHHHhccC--CeeEEEEEecC
Confidence 3211000 00000 0011237899999999999999999999999 7999998765
Q ss_pred -----cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeecccc
Q 019152 300 -----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCGT 341 (345)
Q Consensus 300 -----~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~~ 341 (345)
+|+|||+|.+.++|.+|+..|||. .|+|++|+|.|++..
T Consensus 162 ~~g~~~g~afV~F~~~~~A~~A~~~l~g~---~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 162 TTGKHKGYGFIEYEKAQSSQDAVSSMNLF---DLGGQYLRVGKAVTP 205 (216)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHHTTC---BCSSSBCEEEECSSC
T ss_pred CCCCcCceEEEEecCHHHHHHHHHHccCC---EeCCcEEEEEEecCC
Confidence 789999999999999999999999 999999999999864
No 23
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.97 E-value=4.8e-31 Score=215.75 Aligned_cols=168 Identities=24% Similarity=0.432 Sum_probs=143.9
Q ss_pred CCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 019152 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (345)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~ 216 (345)
.....++|||+|||.++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+.. ++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 345568999999999999999999999999999999999988899999999999999999999985 8999999999999
Q ss_pred eccCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEee
Q 019152 217 WATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRV 296 (345)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i 296 (345)
++........ +....+.++|||+|||.++++++|+++|++|| .|..+.+
T Consensus 88 ~~~~~~~~~~-----------------------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~v~i 136 (196)
T 1l3k_A 88 RAVSREDSQR-----------------------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYG--KIEVIEI 136 (196)
T ss_dssp ECCC----------------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTS--CEEEEEE
T ss_pred cccCcccccc-----------------------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCC--CeEEEEE
Confidence 9865432110 01122347899999999999999999999999 7888888
Q ss_pred eCC------cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeeccc
Q 019152 297 QRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCG 340 (345)
Q Consensus 297 ~~~------~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~ 340 (345)
..+ +|+|||+|.+.++|.+|+.. ++. .++|+.|.|+|+..
T Consensus 137 ~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~---~~~G~~i~v~~a~~ 182 (196)
T 1l3k_A 137 MTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYH---TVNGHNCEVRKALS 182 (196)
T ss_dssp EECTTTCCEEEEEEEEESSHHHHHHHHHC-SCC---EETTEECEEEECC-
T ss_pred eecCCCCCccceEEEEECCHHHHHHHHHh-CCc---EECCEEEEEEecCC
Confidence 754 68999999999999999976 788 99999999999865
No 24
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=8.8e-31 Score=226.42 Aligned_cols=195 Identities=19% Similarity=0.265 Sum_probs=149.2
Q ss_pred CCCceeEEECCCCccCCHHHHH----HHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeE
Q 019152 138 TSGHFNIFVGDLSPEVTDATLF----ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213 (345)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~----~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i 213 (345)
..++++|||+|||.++++++|+ ++|+.||.|..+++.+ +++++|||||+|.+.++|.+|++.|++..+.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4556899999999999999966 8999999999998884 67899999999999999999999999999999999
Q ss_pred EEEeccCCCCCCCCccCccccch-----------------hhcc--CC------CC-c----------------------
Q 019152 214 RCNWATKGAGNNEDKQSSDAKSV-----------------VELT--NG------SS-E---------------------- 245 (345)
Q Consensus 214 ~v~~~~~~~~~~~~~~~~~~~~~-----------------~~~~--~~------~~-~---------------------- 245 (345)
.|.|+.................. .... .. .. .
T Consensus 83 ~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 162 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPP 162 (282)
T ss_pred EEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCC
Confidence 99998665421100000000000 0000 00 00 0
Q ss_pred ----------CC------------------cCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeee
Q 019152 246 ----------DG------------------KETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ 297 (345)
Q Consensus 246 ----------~~------------------~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~ 297 (345)
.. ............++.++|||+|||..+++++|+++|++|| .|..+++.
T Consensus 163 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G--~i~~v~~~ 240 (282)
T 3pgw_A 163 YMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFP--GFKEVRLV 240 (282)
T ss_pred CCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcC--CeEEEEEe
Confidence 00 0000000112344678999999999999999999999999 89999998
Q ss_pred CCc-ceEEEEeCCHHHHHHHHHhhCCCCccccC-CceEEEeeccc
Q 019152 298 RDK-GFGFVRYSTHAEAALAIQMGNTTQSSYLF-GKQMKHDAMCG 340 (345)
Q Consensus 298 ~~~-~~afV~f~~~~~A~~Al~~l~~~~~~~~~-g~~l~v~~~~~ 340 (345)
+++ |+|||+|.+.++|.+|+..|||. .++ |+.|+|+|+|.
T Consensus 241 ~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 241 PGRHDIAFVEFDNEVQAGAARDALQGF---KITQNNAMKISFAKK 282 (282)
T ss_pred cCCCcEEEEEeCCHHHHHHHHHHcCCc---EeCCCCEEEEEEecC
Confidence 876 99999999999999999999999 898 99999999973
No 25
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=6.4e-31 Score=215.05 Aligned_cols=189 Identities=13% Similarity=0.160 Sum_probs=140.4
Q ss_pred CceeEEECCCC-ccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 019152 140 GHFNIFVGDLS-PEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (345)
Q Consensus 140 ~~~~l~v~~lp-~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 218 (345)
++++|||+||| ..+++++|+++|+.||.|.+++++++ .+|||||+|.+.++|.+|++.|+|..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 45799999999 89999999999999999999999854 3689999999999999999999999999999999998
Q ss_pred cCCCCCCCCc-cCccccc-hhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceee--EEE
Q 019152 219 TKGAGNNEDK-QSSDAKS-VVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVI--EEV 294 (345)
Q Consensus 219 ~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i--~~v 294 (345)
.......... ....... ........................+++++|||+|||.++|+++|+++|++|| .| ..+
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G--~v~~~~v 155 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELG--VKRPTSV 155 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHT--CCCCSEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcC--CcceEEE
Confidence 7543211000 0000000 0000000000000000000112245678999999999999999999999999 55 788
Q ss_pred eeeCC----cceEEEEeCCHHHHHHHHHhhCCCCccccCCc----eEEEeec
Q 019152 295 RVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK----QMKHDAM 338 (345)
Q Consensus 295 ~i~~~----~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~----~l~v~~~ 338 (345)
++..+ +|+|||+|.+.++|.+|+..|||. .+.|+ ++.|.|+
T Consensus 156 ~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~---~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 156 KVFSGKSERSSSGLLEWDSKSDALETLGFLNHY---QMKNPNGPYPYTLKLC 204 (205)
T ss_dssp EECSCCSSSSEEEEEECSSHHHHHHHHHHHTTC---EECCSSSSSCEECEEE
T ss_pred EEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCC---CccCCCCCcceEEEec
Confidence 88765 489999999999999999999999 88876 5666664
No 26
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=1.8e-30 Score=224.65 Aligned_cols=168 Identities=24% Similarity=0.373 Sum_probs=155.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecc
Q 019152 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (345)
Q Consensus 55 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (345)
..++|||+|||.++|+++|+++|+.||.|.++.++.++. +|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 347899999999999999999999999999999988753 5799999999999999999999999999999999998
Q ss_pred ccCCCCCCCCceeEEECCCCccC-CHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 019152 131 ASGQREDTSGHFNIFVGDLSPEV-TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (345)
Q Consensus 131 ~~~~~~~~~~~~~l~v~~lp~~~-~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~ 209 (345)
+..........++|||+|||.++ ++++|+++|+.||.|..+.++.+. +|.++|+|||+|.+.++|.+|+..|+|..++
T Consensus 174 ~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 252 (284)
T 3smz_A 174 AGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLG 252 (284)
T ss_dssp GGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccC
Confidence 88776667778899999999995 999999999999999999999885 7899999999999999999999999999999
Q ss_pred CeeEEEEeccCCCC
Q 019152 210 SRQIRCNWATKGAG 223 (345)
Q Consensus 210 ~~~i~v~~~~~~~~ 223 (345)
|+.|.|.|+.++..
T Consensus 253 g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 253 GSHLRVSFCAPGPP 266 (284)
T ss_dssp TEECEEEECCSSSC
T ss_pred CeEEEEEEecCCCc
Confidence 99999999977543
No 27
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=3.4e-31 Score=212.63 Aligned_cols=163 Identities=16% Similarity=0.326 Sum_probs=142.3
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEE---eecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKL---IRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~---~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
.+.+.++|||+|||.++|+++|+++|+.||.+..+.+ .....+|||||+|.+.++|.+|+ .|+|..+.|+.|+|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 4667899999999999999999999999987655222 22346799999999999999999 5999999999999999
Q ss_pred ccccCCCCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 019152 129 AYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 208 (345)
Q Consensus 129 ~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~ 208 (345)
+.+.... .....++|||+|||.++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|++..+
T Consensus 88 ~~~~~~~-~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 1fje_B 88 PKGRDSK-KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI 161 (175)
T ss_dssp CCCSSCS-TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEE
T ss_pred CCCcccc-ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 9765433 33456799999999999999999999999988765 36789999999999999999999999999999
Q ss_pred CCeeEEEEeccCC
Q 019152 209 GSRQIRCNWATKG 221 (345)
Q Consensus 209 ~~~~i~v~~~~~~ 221 (345)
.|+.|.|.|+.++
T Consensus 162 ~g~~i~v~~a~~k 174 (175)
T 1fje_B 162 DGRSVSLYYTGEK 174 (175)
T ss_dssp TTEEEEEEECSSC
T ss_pred CCeEEEEEecCCC
Confidence 9999999999764
No 28
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=1.1e-30 Score=213.79 Aligned_cols=160 Identities=20% Similarity=0.347 Sum_probs=143.3
Q ss_pred cceEEEeCCCC-CCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccccCC
Q 019152 56 CRSVYVGNIHT-QVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQ 134 (345)
Q Consensus 56 ~~~l~v~~lp~-~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~ 134 (345)
+++|||+|||. ++++++|+++|+.||.|.+|.++.++ +|||||+|.+.++|.+|+..|+|..+.|+.|+|.++.....
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~ 81 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 81 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCc
Confidence 57899999999 99999999999999999999998876 68999999999999999999999999999999999875421
Q ss_pred C--------------------------------CCCCCceeEEECCCCccCCHHHHHHHhccCC-CcceeEeeecCCCCC
Q 019152 135 R--------------------------------EDTSGHFNIFVGDLSPEVTDATLFACFSVYP-SCSDARVMWDQKTGR 181 (345)
Q Consensus 135 ~--------------------------------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~ 181 (345)
. ....++++|||+|||..+++++|+++|+.|| .|..+.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~----- 156 (198)
T 1qm9_A 82 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----- 156 (198)
T ss_dssp CCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----
T ss_pred CCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----
Confidence 0 0113468899999999999999999999999 9999998743
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCceeC-CeeEEEEeccCC
Q 019152 182 SRGFGFVSFRNQQDAQSAINDLTGKWLG-SRQIRCNWATKG 221 (345)
Q Consensus 182 ~~g~~fv~f~~~~~a~~a~~~l~~~~~~-~~~i~v~~~~~~ 221 (345)
.+|+|||+|.+.++|.+|+..|+|..++ |+.|.|.|+.++
T Consensus 157 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 2689999999999999999999999999 999999998753
No 29
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=5.4e-30 Score=221.46 Aligned_cols=162 Identities=19% Similarity=0.393 Sum_probs=143.6
Q ss_pred CCCcceEEEeCCCCCCCHHHHH----HHHhccCCceEEEEeecC-CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEe
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQ----EVFSSTGPVEGCKLIRKD-KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~----~~f~~~G~v~~v~~~~~~-~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (345)
..++++|||+|||.++|+++|+ ++|+.||.|.+|.+.++. .+|||||+|.+.++|.+|+..|||..+.|+.|+|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 4567899999999999999966 899999999999988643 46899999999999999999999999999999999
Q ss_pred eccccCCC------------------------------------------------------------------------
Q 019152 128 WAYASGQR------------------------------------------------------------------------ 135 (345)
Q Consensus 128 ~~~~~~~~------------------------------------------------------------------------ 135 (345)
|+......
T Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (282)
T 3pgw_A 86 YAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMP 165 (282)
T ss_pred EeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCC
Confidence 98654310
Q ss_pred ------------------------------------CCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCC
Q 019152 136 ------------------------------------EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKT 179 (345)
Q Consensus 136 ------------------------------------~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~ 179 (345)
....++++|||+|||..+++++|+++|+.||.|..++++.++
T Consensus 166 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-- 243 (282)
T 3pgw_A 166 PPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-- 243 (282)
T ss_pred CCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--
Confidence 112245789999999999999999999999999999998542
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCceeC-CeeEEEEecc
Q 019152 180 GRSRGFGFVSFRNQQDAQSAINDLTGKWLG-SRQIRCNWAT 219 (345)
Q Consensus 180 ~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~-~~~i~v~~~~ 219 (345)
+|||||+|.+.++|.+|+..|+|..+. |+.|+|.|++
T Consensus 244 ---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 244 ---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred ---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 579999999999999999999999999 9999999985
No 30
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=5.3e-30 Score=218.53 Aligned_cols=158 Identities=27% Similarity=0.407 Sum_probs=144.9
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccc
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (345)
.....++|||+|||.++|+++|+++|+.||.|.+|.+.++ +|||||+|.+.++|.+|+..++|..+.|+.|.|.++.+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD--RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 4566789999999999999999999999999999999654 58999999999999999999999999999999999864
Q ss_pred cCCCCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhC-CceeC-
Q 019152 132 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT-GKWLG- 209 (345)
Q Consensus 132 ~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~-~~~~~- 209 (345)
+.+|||+|||..+++++|+++|+.||.|..+.++.+ .+|.++|||||+|.+.++|.+|+..|+ +..+.
T Consensus 96 ---------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~ 165 (261)
T 3sde_A 96 ---------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLT 165 (261)
T ss_dssp ---------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESS
T ss_pred ---------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEec
Confidence 358999999999999999999999999999999999 689999999999999999999999994 55554
Q ss_pred --CeeEEEEeccCC
Q 019152 210 --SRQIRCNWATKG 221 (345)
Q Consensus 210 --~~~i~v~~~~~~ 221 (345)
+++|.|.++...
T Consensus 166 ~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 166 TTPRPVIVEPMEQF 179 (261)
T ss_dssp SSCCBCEEEECCCE
T ss_pred CCCceEEEeecccc
Confidence 999999998764
No 31
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=4.3e-31 Score=210.35 Aligned_cols=158 Identities=25% Similarity=0.462 Sum_probs=140.7
Q ss_pred CceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 019152 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (345)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 219 (345)
++++|||+|||.++++++|+++|+.||.|..+.+++++.+|.++|||||+|.+.++|.+|+.. +..+.|+.|.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 357999999999999999999999999999999999988999999999999999999999984 678999999998875
Q ss_pred CCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC
Q 019152 220 KGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD 299 (345)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~ 299 (345)
.... ..+.++|||+|||.++++++|+++|++|| .|..+.+..+
T Consensus 80 ~~~~-----------------------------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~~~i~~~ 122 (167)
T 2cjk_A 80 PRDE-----------------------------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWG--TIIDAQLMLD 122 (167)
T ss_dssp CHHH-----------------------------------HHHCEEEEEEEECTTCCHHHHHHHHHTTS--CCSEEECCCS
T ss_pred chhh-----------------------------------ccCCCeEEECCCCCCCCHHHHHHHHHhCc--cEEEEEEEEc
Confidence 4210 00126899999999999999999999999 7888888754
Q ss_pred ------cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeeccc
Q 019152 300 ------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCG 340 (345)
Q Consensus 300 ------~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~ 340 (345)
+|+|||+|.+.++|.+|++ +++. .++|++|+|.|++.
T Consensus 123 ~~~g~~~g~afV~f~~~~~a~~A~~-~~~~---~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 123 KDTGQSRGFGFVTYDSADAVDRVCQ-NKFI---DFKDRKIEIKRAEP 165 (167)
T ss_dssp SSSSTTSEEEEEEESSHHHHHHHHH-CSEE---CSSSSCEEEEECCC
T ss_pred CCCCccceEEEEEECCHHHHHHHHh-CCCE---EeCCeEEEEeecCC
Confidence 5899999999999999997 8988 99999999999875
No 32
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=1.2e-30 Score=209.40 Aligned_cols=164 Identities=23% Similarity=0.344 Sum_probs=140.1
Q ss_pred CCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 019152 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (345)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~ 216 (345)
...+.++|||+|||.++++++|+++|+.||.+..+ ++.+..++.++|||||+|.+.++|.+|++ |++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 34556899999999999999999999999987773 34444678899999999999999999995 99999999999999
Q ss_pred eccCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEe-
Q 019152 217 WATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVR- 295 (345)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~- 295 (345)
++...... ...+.++|||+|||..+++++|+++|++|| .|..+.
T Consensus 87 ~~~~~~~~---------------------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g--~v~~~~~ 131 (175)
T 1fje_B 87 KPKGRDSK---------------------------------KVRAARTLLAKNLSFNITEDELKEVFEDAL--EIRLVSQ 131 (175)
T ss_dssp CCCCSSCS---------------------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCS--EEEEECS
T ss_pred cCCCcccc---------------------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcC--eEEEecC
Confidence 98764221 111347999999999999999999999999 676661
Q ss_pred eeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeeccc
Q 019152 296 VQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCG 340 (345)
Q Consensus 296 i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~ 340 (345)
..+++|+|||+|.+.++|.+|+..|||. .++|++|+|+|+++
T Consensus 132 ~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 132 DGKSKGIAYIEFKSEADAEKNLEEKQGA---EIDGRSVSLYYTGE 173 (175)
T ss_dssp SSSCCSEEEEECSSHHHHHHHHHHHTEE---EETTEEEEEEECSS
T ss_pred CCCCceEEEEEECCHHHHHHHHHHhCCC---EECCeEEEEEecCC
Confidence 1234899999999999999999999999 99999999999975
No 33
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=3.6e-30 Score=223.69 Aligned_cols=166 Identities=19% Similarity=0.275 Sum_probs=146.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccC-CceEEEEeecC---CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecc
Q 019152 55 TCRSVYVGNIHTQVTEPLLQEVFSSTG-PVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (345)
Q Consensus 55 ~~~~l~v~~lp~~~t~~~l~~~f~~~G-~v~~v~~~~~~---~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (345)
..++|||+|||..+++++|+++|+.|| .|.++.++.++ .+|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 568899999999999999999999999 99999998865 57999999999999999999999999999999999987
Q ss_pred ccCCCC----CCCCceeEEECCCCcc-CCHHHHHHHhccCCCcceeEeeecCC-CCCcccEEEEEeCCHHHHHHHHHHhC
Q 019152 131 ASGQRE----DTSGHFNIFVGDLSPE-VTDATLFACFSVYPSCSDARVMWDQK-TGRSRGFGFVSFRNQQDAQSAINDLT 204 (345)
Q Consensus 131 ~~~~~~----~~~~~~~l~v~~lp~~-~~~~~l~~~f~~~g~v~~~~~~~~~~-~~~~~g~~fv~f~~~~~a~~a~~~l~ 204 (345)
+..... .....++|||+|||.. +++++|+++|+.||.|..+.++.+.. +|.++|||||+|.+.++|.+|+ .|+
T Consensus 196 ~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~ 274 (292)
T 2ghp_A 196 PLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMN 274 (292)
T ss_dssp CC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGT
T ss_pred CCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hhc
Confidence 665432 3355689999999999 99999999999999999999998755 4899999999999999999999 999
Q ss_pred CceeCCeeEEEEeccCC
Q 019152 205 GKWLGSRQIRCNWATKG 221 (345)
Q Consensus 205 ~~~~~~~~i~v~~~~~~ 221 (345)
|..++|+.|.|.|+.++
T Consensus 275 g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 275 RSLLGNREISVSLADKK 291 (292)
T ss_dssp TEEETTEEEEEEECCCC
T ss_pred CCEECCcEEEEEEecCC
Confidence 99999999999999764
No 34
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=3.5e-30 Score=210.94 Aligned_cols=181 Identities=13% Similarity=0.220 Sum_probs=140.8
Q ss_pred ceeEEECCCCccCCHHHHHHHhccCCCcceeE-----eeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 019152 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDAR-----VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (345)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~-----~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v 215 (345)
+++|||+|||.++++++|+++|+.||.|..+. .+.+...+.++|||||+|.+.++|.+|+ .|++..+.|+.|.|
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v 82 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKI 82 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEE
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEE
Confidence 57999999999999999999999995443321 1111123467899999999999999999 79999999999999
Q ss_pred EeccCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEe
Q 019152 216 NWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVR 295 (345)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~ 295 (345)
.++.............. .............+.++|||+|||..+++++|+++|++|| .|..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G--~v~~~~ 145 (198)
T 2yh0_A 83 RRPHDYQPLPGMSENPS---------------VYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFG--PLKAFN 145 (198)
T ss_dssp ECCCCCCCCCCSSSCSS---------------CCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBS--CEEEEE
T ss_pred eCCCCCCCCCCCcCCCc---------------CCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcC--CccEEE
Confidence 99866533221110000 0000001112224558999999999999999999999999 788998
Q ss_pred eeCC------cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeeccccc
Q 019152 296 VQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCGTL 342 (345)
Q Consensus 296 i~~~------~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~~~ 342 (345)
+.++ +|+|||+|.+.++|.+|+..|||. .++|++|+|+|++..-
T Consensus 146 ~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 146 LVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGM---QLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTC---EETTEECEEEESCCCC
T ss_pred EeecCCCCCcceEEEEEECCHHHHHHHHHHcCCC---EECCEEEEEEECCCCC
Confidence 8765 789999999999999999999999 9999999999998653
No 35
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=2.3e-29 Score=201.30 Aligned_cols=153 Identities=16% Similarity=0.323 Sum_probs=133.3
Q ss_pred CceeEEECCCCccCCHHHHHHHhccC----C-------CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee
Q 019152 140 GHFNIFVGDLSPEVTDATLFACFSVY----P-------SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 208 (345)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~ 208 (345)
++++|||+|||.++++++|+++|+.| | .|..+.+. .++|||||+|.+.++|.+|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 35799999999999999999999999 5 44444433 55899999999999999999 8999999
Q ss_pred CCeeEEEEeccCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCc
Q 019152 209 GSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGA 288 (345)
Q Consensus 209 ~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~ 288 (345)
.|+.|.|.++...... ...++|+|+|||..+++++|+++|++||
T Consensus 76 ~g~~i~v~~~~~~~~~-----------------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G- 119 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQPL-----------------------------------PGAHKLFIGGLPNYLNDDQVKELLTSFG- 119 (172)
T ss_dssp TTEECEEECCSSCCCC-----------------------------------TTTTCEEEECCCTTCCHHHHHHHHHTTS-
T ss_pred cCceeeecCCcccCCC-----------------------------------CCCCEEEEEcCCCcCCHHHHHHHHHhcC-
Confidence 9999999986543211 1137899999999999999999999999
Q ss_pred eeeEEEeeeCC------cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeecc
Q 019152 289 GVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMC 339 (345)
Q Consensus 289 ~~i~~v~i~~~------~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~ 339 (345)
.|..+.+.++ +|+|||+|.+.++|.+|++.|||. .++|++|+|+||.
T Consensus 120 -~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~V~~As 172 (172)
T 2g4b_A 120 -PLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGM---QLGDKKLLVQRAS 172 (172)
T ss_dssp -CEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTC---EETTEECEEEECC
T ss_pred -CceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCC---EECCeEEEEEeCC
Confidence 7889988765 689999999999999999999999 9999999999973
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=4.4e-28 Score=206.66 Aligned_cols=153 Identities=27% Similarity=0.443 Sum_probs=136.4
Q ss_pred CCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 019152 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (345)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~ 216 (345)
.....++|||+|||.++++++|+++|+.||.|..+.+.+ ++|||||+|.+.++|.+|+..+++..+.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 345567999999999999999999999999999998863 46899999999999999999999999999999999
Q ss_pred eccCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEee
Q 019152 217 WATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRV 296 (345)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i 296 (345)
++.. .++|||+|||..+|+++|+++|+.|| .|..|.+
T Consensus 92 ~a~~-----------------------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G--~i~~v~i 128 (261)
T 3sde_A 92 FATH-----------------------------------------GAALTVKNLSPVVSNELLEQAFSQFG--PVEKAVV 128 (261)
T ss_dssp ECCC-----------------------------------------SSEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEE
T ss_pred eccc-----------------------------------------CCcccccCCCCCCCHHHHHHHHHhcC--CeEEEEe
Confidence 9853 16899999999999999999999999 7888888
Q ss_pred eCC-----cceEEEEeCCHHHHHHHHHhhCCCCccccC---CceEEEeeccc
Q 019152 297 QRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLF---GKQMKHDAMCG 340 (345)
Q Consensus 297 ~~~-----~~~afV~f~~~~~A~~Al~~l~~~~~~~~~---g~~l~v~~~~~ 340 (345)
..+ +|+|||+|.+.++|.+|+..||+.. .+. +++|.|.|+..
T Consensus 129 ~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~--~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 129 VVDDRGRATGKGFVEFAAKPPARKALERCGDGA--FLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp EEETTSCEEEEEEEEESSHHHHHHHHHHHHHSC--EESSSSCCBCEEEECCC
T ss_pred eeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCe--EEecCCCceEEEeeccc
Confidence 755 7999999999999999999995431 343 99999999864
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.88 E-value=3.3e-22 Score=157.16 Aligned_cols=138 Identities=24% Similarity=0.303 Sum_probs=110.7
Q ss_pred EEEeecC--CCCeEEEEEeCHHHHHHHHHHhCCCccCCC-------ceEEeecccc---CCCCCCCCceeEEECCCCccC
Q 019152 86 CKLIRKD--KSSYGFIHYFDRRSAAMAILSLNGRHLFGQ-------PIKVNWAYAS---GQREDTSGHFNIFVGDLSPEV 153 (345)
Q Consensus 86 v~~~~~~--~~~~afv~f~~~~~A~~a~~~l~~~~~~g~-------~l~v~~~~~~---~~~~~~~~~~~l~v~~lp~~~ 153 (345)
++++.++ .+|||||+|.+.++|.+|+..+++....+. .......... .........++|||+|||.++
T Consensus 3 ~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 82 (158)
T 2kn4_A 3 YKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRT 82 (158)
T ss_dssp EEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTC
T ss_pred EEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCC
Confidence 4555544 469999999999999999988765332222 2222222111 122233456899999999999
Q ss_pred CHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCCCC
Q 019152 154 TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAG 223 (345)
Q Consensus 154 ~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~ 223 (345)
++++|+++|+.||.|..+.+++++.+|.++|||||+|.+.++|.+|+..|++..+.|+.|.|.|+.....
T Consensus 83 ~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 83 SPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp CHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred CHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 9999999999999999999999988999999999999999999999999999999999999999987643
No 38
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=2e-22 Score=149.18 Aligned_cols=102 Identities=24% Similarity=0.473 Sum_probs=73.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC--CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecccc
Q 019152 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK--SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (345)
Q Consensus 55 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~--~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (345)
.+.+|||+|||+++|+++|+++|+.||.|.+|+++.++. +|||||+|.+.++|.+|+..|+|..+.|+.|+|.++.++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 456899999999999999999999999999999998764 589999999999999999999999999999999998765
Q ss_pred CCCC-----CCCCceeEEECCCCccCCHH
Q 019152 133 GQRE-----DTSGHFNIFVGDLSPEVTDA 156 (345)
Q Consensus 133 ~~~~-----~~~~~~~l~v~~lp~~~~~~ 156 (345)
..+. .....++|||+|||+++|++
T Consensus 84 ~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 84 KEREAELGARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp CC---------------------------
T ss_pred cccccccccccCCCCceEeCCCCCCcccc
Confidence 5322 12334679999999999876
No 39
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.86 E-value=1e-21 Score=152.77 Aligned_cols=138 Identities=22% Similarity=0.278 Sum_probs=112.0
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHh-CCceeCCeeEEEEeccCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCC
Q 019152 179 TGRSRGFGFVSFRNQQDAQSAINDL-TGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPE 257 (345)
Q Consensus 179 ~~~~~g~~fv~f~~~~~a~~a~~~l-~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (345)
....+|+++++|.+.++|.+|+..+ ++..+.| .+.+.++.......... ..........
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~-------------------~~~~~~~~~~ 68 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGS-------------------HHHHHHMHRD 68 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSS-------------------SSCCCCSCSS
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccc-------------------cccccccccc
Confidence 3467899999999999999999999 9999999 99998775422110000 0000111122
Q ss_pred CCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC-cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEe
Q 019152 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHD 336 (345)
Q Consensus 258 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~-~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~ 336 (345)
...+.++|||+|||.++++++|+++|++|| .|..|++.++ +|+|||+|.+.++|.+|+..|||. .++|++|+|+
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G--~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~v~ 143 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYG--PLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGR---TLCGCRVRVE 143 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHS--CEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSS---CSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhC--CEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCC---EECCeEEEEE
Confidence 334558999999999999999999999999 8999999887 999999999999999999999999 9999999999
Q ss_pred ecccc
Q 019152 337 AMCGT 341 (345)
Q Consensus 337 ~~~~~ 341 (345)
|++..
T Consensus 144 ~a~~~ 148 (150)
T 2i2y_A 144 LSNGE 148 (150)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 99864
No 40
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.86 E-value=1.6e-21 Score=144.34 Aligned_cols=109 Identities=26% Similarity=0.501 Sum_probs=74.6
Q ss_pred ceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 019152 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (345)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 220 (345)
.++|||+|||.++++++|+++|+.||.|.++++++++ +.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 4689999999999999999999999999999999884 45799999999999999999999999999999999999876
Q ss_pred CCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHH
Q 019152 221 GAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLD 278 (345)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~ 278 (345)
+........ ......++|||+|||+++|++.
T Consensus 83 ~~~~~~~~~---------------------------~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 83 RKEREAELG---------------------------ARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCC-------------------------------------------------------
T ss_pred ccccccccc---------------------------cccCCCCceEeCCCCCCccccc
Confidence 433211110 0111225799999999998763
No 41
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.85 E-value=2.7e-21 Score=150.42 Aligned_cols=124 Identities=20% Similarity=0.281 Sum_probs=110.2
Q ss_pred CCCCeEEEEEeCHHHHHHHHHHh-CCCccCCCceEEeeccccC-------------CCCCCCCceeEEECCCCccCCHHH
Q 019152 92 DKSSYGFIHYFDRRSAAMAILSL-NGRHLFGQPIKVNWAYASG-------------QREDTSGHFNIFVGDLSPEVTDAT 157 (345)
Q Consensus 92 ~~~~~afv~f~~~~~A~~a~~~l-~~~~~~g~~l~v~~~~~~~-------------~~~~~~~~~~l~v~~lp~~~~~~~ 157 (345)
+-.|+++|+|.+.++|.+|+..+ ||..+.| .+.+.++.... ........++|||+|||.++++++
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~ 89 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTE 89 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHH
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHH
Confidence 34689999999999999999999 9999999 99999876521 123345568999999999999999
Q ss_pred HHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCC
Q 019152 158 LFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (345)
Q Consensus 158 l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 221 (345)
|+++|+.||.|..++++.+ ++|||||+|.+.++|.+|+..|++..+.|+.|.|.|+.++
T Consensus 90 l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 90 LERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 9999999999999999865 5789999999999999999999999999999999998765
No 42
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.84 E-value=1.8e-20 Score=147.17 Aligned_cols=143 Identities=17% Similarity=0.211 Sum_probs=103.9
Q ss_pred eeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCCCCCCCCccCccccchhhccCCCCcCCcC
Q 019152 170 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKE 249 (345)
Q Consensus 170 ~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (345)
.+++..+. ..++||+||+|.+.++|++|+..+++....+..+.+........ . . ..
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~----~-------~-----------~~ 57 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFT----V-------T-----------EG 57 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEE----E-------E-----------CC
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccc----c-------c-----------cc
Confidence 34566653 36899999999999999999988776433222222221100000 0 0 00
Q ss_pred CCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC------cceEEEEeCCHHHHHHHHHhhCCC
Q 019152 250 TTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTT 323 (345)
Q Consensus 250 ~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~------~~~afV~f~~~~~A~~Al~~l~~~ 323 (345)
.............++|||+|||.++++++|+++|+.|| .|..+.+.++ +|+|||+|.+.++|.+|+..|||.
T Consensus 58 ~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G--~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 135 (158)
T 2kn4_A 58 SHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYG--RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA 135 (158)
T ss_dssp CCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHS--CEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTE
T ss_pred ccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 00001111223458999999999999999999999999 7999998764 689999999999999999999999
Q ss_pred CccccCCceEEEeecccc
Q 019152 324 QSSYLFGKQMKHDAMCGT 341 (345)
Q Consensus 324 ~~~~~~g~~l~v~~~~~~ 341 (345)
.++|++|+|.|++..
T Consensus 136 ---~~~g~~l~v~~a~~~ 150 (158)
T 2kn4_A 136 ---VLDGRELRVQMARYG 150 (158)
T ss_dssp ---ESSSSEEEEEEECCS
T ss_pred ---EECCeEEEEEECCCC
Confidence 999999999999864
No 43
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.83 E-value=4.7e-20 Score=132.22 Aligned_cols=80 Identities=33% Similarity=0.517 Sum_probs=77.0
Q ss_pred ceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 019152 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (345)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 220 (345)
+++|||+|||.++++++|+++|+.||.|..+++++++.+|.++|||||+|.+.++|.+|++.|+|..+.|+.|+|.|+++
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999865
No 44
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=127.91 Aligned_cols=80 Identities=21% Similarity=0.252 Sum_probs=73.6
Q ss_pred CCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEee
Q 019152 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDA 337 (345)
Q Consensus 258 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~ 337 (345)
..+++++|||+|||+++|+++|+++|++|| .|.++.+.+++|+|||+|++.++|.+|++.|++.++ .++|++|+|+|
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG--~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~-~i~Gr~i~V~~ 93 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFG--PISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQI-YIAGHPAFVNY 93 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCE-EETTEEEEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccC--CEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCc-eeCCcEEEEEe
Confidence 445668999999999999999999999999 899999999999999999999999999999999833 48899999999
Q ss_pred ccc
Q 019152 338 MCG 340 (345)
Q Consensus 338 ~~~ 340 (345)
++.
T Consensus 94 S~~ 96 (100)
T 3r27_A 94 STS 96 (100)
T ss_dssp CSC
T ss_pred ccc
Confidence 975
No 45
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.81 E-value=1.1e-19 Score=134.56 Aligned_cols=104 Identities=17% Similarity=0.247 Sum_probs=93.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC-CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccc
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~-~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (345)
+.++++|||+|||.++++++|+++|+.||.|.+|.+..++ ++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 3456899999999999999999999999999999998765 468999999999999999999999999999999999976
Q ss_pred cCCCCCCCCceeEEECCCCccCCHHHHHHHhccCCC
Q 019152 132 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPS 167 (345)
Q Consensus 132 ~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~ 167 (345)
+... .+++...+++++.++|++||.
T Consensus 85 ~~~~-----------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 85 NRAF-----------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHT-----------TTSCHHHHHHHHHHHHHHHCC
T ss_pred Chhh-----------hhhhHhHhHHHHHHHHHHhCC
Confidence 5532 577888899999999999975
No 46
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=1.5e-19 Score=130.62 Aligned_cols=94 Identities=27% Similarity=0.428 Sum_probs=82.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccccCCCC
Q 019152 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQRE 136 (345)
Q Consensus 57 ~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~ 136 (345)
++|||+|||.++|+++|+++|+.||.|.++.+..+ .+|||||+|.+.++|.+|+..|+|..+.|+.|+|.++.++....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 79 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRS 79 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCcc
Confidence 47999999999999999999999999999999988 77899999999999999999999999999999999997765322
Q ss_pred C-------CCCceeEEECCCCc
Q 019152 137 D-------TSGHFNIFVGDLSP 151 (345)
Q Consensus 137 ~-------~~~~~~l~v~~lp~ 151 (345)
. .....++||+||+.
T Consensus 80 ~~~~~~~~~~~~~~ifvg~L~h 101 (101)
T 2hvz_A 80 RFDRPPARRKLLEVLFNGPLEH 101 (101)
T ss_dssp CCCSCCCSCCCCSCCCSCCCCC
T ss_pred cCCCCCccccCCCceecCCCCC
Confidence 1 12356899999973
No 47
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=1.6e-19 Score=127.41 Aligned_cols=83 Identities=18% Similarity=0.295 Sum_probs=76.3
Q ss_pred ceeEEECCCCccCCHHHHHHHhccCC-CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhC-CceeCCeeEEEEec
Q 019152 141 HFNIFVGDLSPEVTDATLFACFSVYP-SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT-GKWLGSRQIRCNWA 218 (345)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~-~~~~~~~~i~v~~~ 218 (345)
+++|||+|||.++++++|+++|+.|| .|.++++++++.+|.++|||||+|.+.++|.+|++.++ +..+.|+.|.|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 79999999999999999999999999999999998775 56799999999999
Q ss_pred cCCCC
Q 019152 219 TKGAG 223 (345)
Q Consensus 219 ~~~~~ 223 (345)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87643
No 48
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.79 E-value=3.5e-19 Score=127.66 Aligned_cols=77 Identities=34% Similarity=0.406 Sum_probs=70.9
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC------cceEEEEeCCHHHHHHHHHhhCCCCccccCCceE
Q 019152 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (345)
Q Consensus 260 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~------~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l 333 (345)
..+++|||+|||.++|+++|+++|++|| .|..+++.++ +|+|||+|.+.++|.+|++.|||. .++|++|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G--~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~---~~~gr~l 91 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIG--EVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGL---RLQSKTI 91 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTS--CEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTC---EETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCC---EECCEEE
Confidence 3457899999999999999999999999 7999988754 689999999999999999999999 9999999
Q ss_pred EEeecccc
Q 019152 334 KHDAMCGT 341 (345)
Q Consensus 334 ~v~~~~~~ 341 (345)
+|+||+.+
T Consensus 92 ~V~~AkPS 99 (99)
T 4fxv_A 92 KVSYARPS 99 (99)
T ss_dssp EEEECCBC
T ss_pred EEEEeeCC
Confidence 99999864
No 49
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.5e-19 Score=126.23 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=73.1
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCC--CccCCCceEEeecc
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNG--RHLFGQPIKVNWAY 130 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~--~~~~g~~l~v~~~~ 130 (345)
+.+.++|||+|||+++|+++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|+..+++ ..+.|++|+|.|+.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~ 90 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 90 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcC
Confidence 455689999999999999999999999999999999876 58999999999999999998864 78999999999998
Q ss_pred ccCCC
Q 019152 131 ASGQR 135 (345)
Q Consensus 131 ~~~~~ 135 (345)
++...
T Consensus 91 ~~~~~ 95 (105)
T 1sjq_A 91 HKELK 95 (105)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 76543
No 50
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.79 E-value=2e-19 Score=136.65 Aligned_cols=124 Identities=25% Similarity=0.385 Sum_probs=82.7
Q ss_pred eEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccccCCCCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeee
Q 019152 96 YGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMW 175 (345)
Q Consensus 96 ~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~ 175 (345)
++|.+|.+...+..|+..++|....|+. .+.+..+ .....+.++|||+|||.++++++|+++|+.||.|..+.++.
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~---~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~ 81 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRP---PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPR 81 (135)
T ss_dssp ------------------------------CCSCCS---CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC-CCCcCCC---CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence 6789999999999999999887666654 2333322 22334457999999999999999999999999999999999
Q ss_pred cCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCCCC
Q 019152 176 DQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAG 223 (345)
Q Consensus 176 ~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~ 223 (345)
++.++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.|+.....
T Consensus 82 ~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 82 DRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp CSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred cCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 988899999999999999999999999999999999999999987544
No 51
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.8e-19 Score=126.53 Aligned_cols=76 Identities=13% Similarity=0.147 Sum_probs=70.8
Q ss_pred CcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCC--CCccccCCceEEEeec
Q 019152 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNT--TQSSYLFGKQMKHDAM 338 (345)
Q Consensus 261 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~--~~~~~~~g~~l~v~~~ 338 (345)
+.++|||+|||+++|+++|+++|++|| .|.+|.+.+++|+|||+|++.++|.+|++.|++ . .+.|++|+|+|+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG--~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~---~l~Gr~l~V~~A 89 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFG--KVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTP---VLRGQPIYIQFS 89 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHC--CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCC---EETTEECCBCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCc---eECCEEEEEEEc
Confidence 458999999999999999999999999 899999999999999999999999999998864 5 799999999999
Q ss_pred ccc
Q 019152 339 CGT 341 (345)
Q Consensus 339 ~~~ 341 (345)
+..
T Consensus 90 ~~~ 92 (105)
T 1sjq_A 90 NHK 92 (105)
T ss_dssp SSS
T ss_pred CCC
Confidence 764
No 52
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=127.57 Aligned_cols=83 Identities=16% Similarity=0.218 Sum_probs=78.6
Q ss_pred CCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 019152 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (345)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 218 (345)
.+.++|||+|||.++++++|+++|++||.|.++.+++++.+++++|||||+|.+.++|.+|++.|++..+.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34579999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred cCC
Q 019152 219 TKG 221 (345)
Q Consensus 219 ~~~ 221 (345)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 643
No 53
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.78 E-value=7.9e-19 Score=124.27 Aligned_cols=79 Identities=23% Similarity=0.444 Sum_probs=74.1
Q ss_pred eeEEECCCCccCCHHHHHHHhccCCC--cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc----eeCCeeEEE
Q 019152 142 FNIFVGDLSPEVTDATLFACFSVYPS--CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK----WLGSRQIRC 215 (345)
Q Consensus 142 ~~l~v~~lp~~~~~~~l~~~f~~~g~--v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~----~~~~~~i~v 215 (345)
++|||+|||+++|+++|+++|++||. +.++++++|+.+|.++|||||+|.+.++|.+|++.|++. .++|++|.|
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V 89 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGV 89 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEE
Confidence 58999999999999999999999995 679999999999999999999999999999999999986 589999999
Q ss_pred EeccC
Q 019152 216 NWATK 220 (345)
Q Consensus 216 ~~~~~ 220 (345)
+|++.
T Consensus 90 ~~Aks 94 (95)
T 2lkz_A 90 DFAKS 94 (95)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 99864
No 54
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=124.67 Aligned_cols=81 Identities=17% Similarity=0.224 Sum_probs=72.5
Q ss_pred CCCCcceEEEeCCCC-CCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCC--ccCCCceEEee
Q 019152 52 DPSTCRSVYVGNIHT-QVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGR--HLFGQPIKVNW 128 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~-~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~--~~~g~~l~v~~ 128 (345)
...++++|||+|||+ ++|+++|+++|++||.|.+|.+++++ |||||+|.+.++|..|+..|++. .+.|++|+|.+
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k--g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI--NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS--SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC--CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 355678999999999 99999999999999999999998764 79999999999999999998864 59999999999
Q ss_pred ccccCC
Q 019152 129 AYASGQ 134 (345)
Q Consensus 129 ~~~~~~ 134 (345)
+.....
T Consensus 89 a~~~~~ 94 (102)
T 1x4d_A 89 SQKYKR 94 (102)
T ss_dssp ECCCTT
T ss_pred CCCCCC
Confidence 986543
No 55
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.5e-18 Score=123.27 Aligned_cols=85 Identities=38% Similarity=0.813 Sum_probs=77.3
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC--CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~--~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
...+.++|||+|||..+++++|+++|+.||.|.+|.++.++ .+|||||+|.+.++|.+|+..|++..+.|+.|+|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEEC
Confidence 45667899999999999999999999999999999999865 3589999999999999999999999999999999999
Q ss_pred cccCCCC
Q 019152 130 YASGQRE 136 (345)
Q Consensus 130 ~~~~~~~ 136 (345)
.++....
T Consensus 91 ~~~~~~~ 97 (103)
T 2cqi_A 91 TTPSSQK 97 (103)
T ss_dssp CCTTCCC
T ss_pred CCCcccc
Confidence 8766543
No 56
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.5e-18 Score=122.81 Aligned_cols=84 Identities=26% Similarity=0.382 Sum_probs=77.0
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC--CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK--SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~--~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
.+.+.++|||+|||.++++++|+++|+.||.|.+|.++.++. +|||||+|.+.++|.+|+..|+|..|.|+.|+|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 456678999999999999999999999999999999998753 689999999999999999999999999999999999
Q ss_pred cccCCC
Q 019152 130 YASGQR 135 (345)
Q Consensus 130 ~~~~~~ 135 (345)
.++...
T Consensus 91 ~~~~~~ 96 (103)
T 2cq3_A 91 TARVMT 96 (103)
T ss_dssp CSSCCC
T ss_pred ccCCCC
Confidence 876543
No 57
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.1e-18 Score=123.88 Aligned_cols=84 Identities=19% Similarity=0.379 Sum_probs=76.6
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC-CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecc
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~-~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (345)
.+.+.++|||+|||.++|+++|+++|+.||.|.+|.+..++. ++||||+|.+.++|.+|+..||+..+.|+.|+|.++.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 455678999999999999999999999999999999977654 7899999999999999999999999999999999998
Q ss_pred ccCCC
Q 019152 131 ASGQR 135 (345)
Q Consensus 131 ~~~~~ 135 (345)
+....
T Consensus 98 ~~~~~ 102 (109)
T 1x4a_A 98 SGRGT 102 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 76543
No 58
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.77 E-value=3e-18 Score=131.96 Aligned_cols=81 Identities=25% Similarity=0.387 Sum_probs=74.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCC--CceEEeecc
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFG--QPIKVNWAY 130 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~~~ 130 (345)
++...+|||+||++.+|+++|+++|+.||.|.+|.+..++.+|||||+|.+.++|.+|++.|||..|.| +.|+|.|+.
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 556778999999999999999999999999999999877777899999999999999999999999966 999999998
Q ss_pred ccC
Q 019152 131 ASG 133 (345)
Q Consensus 131 ~~~ 133 (345)
++.
T Consensus 123 ~~~ 125 (164)
T 1sjr_A 123 LTS 125 (164)
T ss_dssp SSS
T ss_pred CCc
Confidence 764
No 59
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=124.82 Aligned_cols=77 Identities=18% Similarity=0.242 Sum_probs=71.3
Q ss_pred CcceEEEcCCCc-ccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeecc
Q 019152 261 QYTTVYVGNLAP-EVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMC 339 (345)
Q Consensus 261 ~~~~l~V~nlp~-~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~ 339 (345)
++++|||+|||+ .+|+++|+++|++|| .|.+|.+.+++++|||+|++.++|.+|++.|++.+. .+.|++|+|.|++
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG--~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~-~~~Gr~l~V~~a~ 90 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFG--VISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPA-LVFGKPVRVHLSQ 90 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGS--CEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCC-EETTEECEEEEEC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcC--CEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCc-eECCcEEEEEECC
Confidence 568999999999 999999999999999 899999999999999999999999999999987521 5999999999998
Q ss_pred c
Q 019152 340 G 340 (345)
Q Consensus 340 ~ 340 (345)
.
T Consensus 91 ~ 91 (102)
T 1x4d_A 91 K 91 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 60
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.77 E-value=7.2e-19 Score=124.47 Aligned_cols=81 Identities=20% Similarity=0.340 Sum_probs=70.9
Q ss_pred CcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC------cceEEEEeCCHHHHHHHHHhhCCCC-ccccCCceE
Q 019152 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQ-SSYLFGKQM 333 (345)
Q Consensus 261 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~------~~~afV~f~~~~~A~~Al~~l~~~~-~~~~~g~~l 333 (345)
...||||+|||+.+|+++|+++|++||...+.+|++.++ +|+|||+|.+.++|.+|++.|||.+ ...++||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 347899999999999999999999999656778888654 7899999999999999999999972 225899999
Q ss_pred EEeecccc
Q 019152 334 KHDAMCGT 341 (345)
Q Consensus 334 ~v~~~~~~ 341 (345)
.|+||+++
T Consensus 88 ~V~~Akss 95 (95)
T 2lkz_A 88 GVDFAKSA 95 (95)
T ss_dssp EEEECCCC
T ss_pred EEEEccCC
Confidence 99999874
No 61
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.1e-18 Score=124.28 Aligned_cols=81 Identities=19% Similarity=0.194 Sum_probs=72.9
Q ss_pred CCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEee
Q 019152 258 NNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDA 337 (345)
Q Consensus 258 ~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~ 337 (345)
..++.++|||+|||+++++++|+++|++|| .|..|.+.+++|+|||+|++.++|.+|++.|++.+. .+.|++|+|.|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG--~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~-~i~Gr~l~V~~ 87 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFG--TICYVMMMPFKRQALVEFENIDSAKECVTFAADVPV-YIAGQQAFFNY 87 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTS--CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCC-BSSSSBCEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCC--CEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCc-eECCEEEEEEE
Confidence 345668999999999999999999999999 899999999999999999999999999999876522 59999999999
Q ss_pred cccc
Q 019152 338 MCGT 341 (345)
Q Consensus 338 ~~~~ 341 (345)
++..
T Consensus 88 a~~~ 91 (104)
T 1wex_A 88 STSK 91 (104)
T ss_dssp CSSS
T ss_pred ccCc
Confidence 9753
No 62
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.8e-18 Score=123.64 Aligned_cols=86 Identities=22% Similarity=0.437 Sum_probs=77.9
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeec--CCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK--DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~--~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
.+.+.++|||+|||+++|+++|+++|+.||.|.+|.+..+ ..+|||||+|.+.++|.+|+..|+|..+.|+.|+|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 4557789999999999999999999999999999999987 34589999999999999999999999999999999999
Q ss_pred cccCCCCC
Q 019152 130 YASGQRED 137 (345)
Q Consensus 130 ~~~~~~~~ 137 (345)
.++..+..
T Consensus 91 ~~~~~~~~ 98 (103)
T 2d9p_A 91 QRKEERQS 98 (103)
T ss_dssp SSCCCCCC
T ss_pred cccccCCC
Confidence 87765443
No 63
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.77 E-value=1.5e-18 Score=117.94 Aligned_cols=74 Identities=16% Similarity=0.179 Sum_probs=70.8
Q ss_pred cceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeeccc
Q 019152 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCG 340 (345)
Q Consensus 262 ~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~ 340 (345)
+.-|+|+||++.+|+++|+++|.+|| .|.++++..++|+|||+|.+.++|.+|++.||+. .++|++|+|.+|.+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G--~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~---~l~gr~I~V~~A~e 80 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHG--PLVSFHPYLNQGIALCKYTTREEANKAQMALNNC---VLANTTIFAESPSE 80 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHS--CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTE---EETTEEEEEECCCH
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhC--CEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCC---EECCcEEEEEECCH
Confidence 36799999999999999999999999 8999999999999999999999999999999999 99999999999964
No 64
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6e-18 Score=123.11 Aligned_cols=84 Identities=33% Similarity=0.626 Sum_probs=76.8
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEe
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (345)
.+.+.++|||+|||.++++++|+++|+.||.|.+|.+..++ .+|||||+|.+.++|.+|+..|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45667899999999999999999999999999999998875 35899999999999999999999999999999999
Q ss_pred eccccCCC
Q 019152 128 WAYASGQR 135 (345)
Q Consensus 128 ~~~~~~~~ 135 (345)
++.++...
T Consensus 91 ~a~~~~~~ 98 (105)
T 1x5u_A 91 KASAHNKN 98 (105)
T ss_dssp ETTTTSCC
T ss_pred ECCCCCcC
Confidence 99877644
No 65
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.7e-18 Score=122.18 Aligned_cols=78 Identities=14% Similarity=0.135 Sum_probs=71.6
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhC--CCCccccCCceEEEe
Q 019152 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN--TTQSSYLFGKQMKHD 336 (345)
Q Consensus 259 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~--~~~~~~~~g~~l~v~ 336 (345)
.+++++|||+|||+.+++++|+++|++|| .|..|.+.+++|+|||+|++.++|.+|++.|+ +. .+.|++|+|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG--~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~---~~~Gr~l~V~ 86 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFG--KVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTP---HLRNQPIYIQ 86 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTS--CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCC---EETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCc---eECCcEEEEE
Confidence 34668999999999999999999999999 89999999999999999999999999999875 55 7999999999
Q ss_pred ecccc
Q 019152 337 AMCGT 341 (345)
Q Consensus 337 ~~~~~ 341 (345)
|++..
T Consensus 87 ~a~~~ 91 (101)
T 2cq1_A 87 YSNHK 91 (101)
T ss_dssp ECSCS
T ss_pred EcCcc
Confidence 99864
No 66
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=5.4e-18 Score=121.36 Aligned_cols=83 Identities=25% Similarity=0.358 Sum_probs=75.3
Q ss_pred CCCCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 50 GFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 50 ~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
...+...++|||+|||.++++++|+++|+.||.|. +.++.++.+|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 13 ~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 13 GEGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CSSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 33455678999999999999999999999999996 67778888899999999999999999999999999999999999
Q ss_pred cccC
Q 019152 130 YASG 133 (345)
Q Consensus 130 ~~~~ 133 (345)
.++.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 67
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.77 E-value=2.6e-18 Score=121.44 Aligned_cols=78 Identities=19% Similarity=0.267 Sum_probs=70.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCc--cCCCceEEeecc
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRH--LFGQPIKVNWAY 130 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~--~~g~~l~v~~~~ 130 (345)
..++++|||+|||.++|+++|+++|++||.|.++.+++ .+|+|||+|.+.++|..|+..+++.. +.|++|+|.|+.
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~--~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP--KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 44568999999999999999999999999999999985 45799999999999999999998875 789999999997
Q ss_pred cc
Q 019152 131 AS 132 (345)
Q Consensus 131 ~~ 132 (345)
.+
T Consensus 96 ~k 97 (100)
T 3r27_A 96 SQ 97 (100)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 68
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.77 E-value=3e-18 Score=129.01 Aligned_cols=82 Identities=24% Similarity=0.367 Sum_probs=75.5
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEe
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (345)
.+.+.++|||+|||.++++++|+++|+.||.|.+|.++.++ .+|||||+|.+.++|.+|+..|+|..|.|+.|+|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45667899999999999999999999999999999998864 46899999999999999999999999999999999
Q ss_pred eccccC
Q 019152 128 WAYASG 133 (345)
Q Consensus 128 ~~~~~~ 133 (345)
|+.++.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 997654
No 69
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=7.6e-18 Score=120.19 Aligned_cols=84 Identities=30% Similarity=0.555 Sum_probs=76.5
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
+.++++|||+|||.++++++|+++|+.||.|.++.+..++. +|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 34568999999999999999999999999999999998753 68999999999999999999999999999999999
Q ss_pred ccccCCCC
Q 019152 129 AYASGQRE 136 (345)
Q Consensus 129 ~~~~~~~~ 136 (345)
+.++....
T Consensus 82 a~~~~~~~ 89 (95)
T 2dnz_A 82 VTERLDGG 89 (95)
T ss_dssp SSCCCCCC
T ss_pred cccccCCC
Confidence 98776543
No 70
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.8e-18 Score=122.10 Aligned_cols=84 Identities=24% Similarity=0.460 Sum_probs=76.6
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
..+.++|||+|||.++++++|+++|+.||.|.+|.++.++ .+|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4567899999999999999999999999999999998865 368999999999999999999999999999999999
Q ss_pred ccccCCCC
Q 019152 129 AYASGQRE 136 (345)
Q Consensus 129 ~~~~~~~~ 136 (345)
+.++....
T Consensus 89 a~~~~~~~ 96 (102)
T 1x5s_A 89 AGKSSDNR 96 (102)
T ss_dssp EECCCCCC
T ss_pred CCCCCCCC
Confidence 98776543
No 71
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=6.3e-18 Score=121.58 Aligned_cols=84 Identities=18% Similarity=0.290 Sum_probs=76.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
..+.++|||+|||.++++++|+++|+.||.|.+|.+..++ .+|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999998875 468999999999999999999999999999999999
Q ss_pred ccccCCCC
Q 019152 129 AYASGQRE 136 (345)
Q Consensus 129 ~~~~~~~~ 136 (345)
+.++....
T Consensus 85 a~~~~~~~ 92 (99)
T 1whw_A 85 STIKKEAS 92 (99)
T ss_dssp CCCCSTTC
T ss_pred cCCCcccc
Confidence 98876543
No 72
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.76 E-value=5.6e-18 Score=117.65 Aligned_cols=80 Identities=51% Similarity=0.890 Sum_probs=77.1
Q ss_pred eeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCC
Q 019152 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (345)
Q Consensus 142 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 221 (345)
.+|||+|||.++++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.|+.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999999889999999999999999999999999999999999999999764
No 73
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=7.4e-18 Score=121.37 Aligned_cols=80 Identities=16% Similarity=0.120 Sum_probs=71.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCC--CccCCCceEEeecc
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNG--RHLFGQPIKVNWAY 130 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~--~~~~g~~l~v~~~~ 130 (345)
..++++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|+..|++ ..+.|+.|+|.|+.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 345689999999999999999999999999999998765 68999999999999999998865 45999999999998
Q ss_pred ccCC
Q 019152 131 ASGQ 134 (345)
Q Consensus 131 ~~~~ 134 (345)
.+..
T Consensus 90 ~~~~ 93 (104)
T 1wex_A 90 SKRI 93 (104)
T ss_dssp SSSC
T ss_pred Cccc
Confidence 7654
No 74
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.76 E-value=2e-18 Score=117.36 Aligned_cols=73 Identities=19% Similarity=0.244 Sum_probs=68.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecc
Q 019152 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (345)
Q Consensus 56 ~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (345)
+..|||+||++.+||++|+++|.+||+|.++.+.. ++|||||+|.+.++|.+|++.||+..+.|++|+|.++.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 45699999999999999999999999999999876 67899999999999999999999999999999999873
No 75
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.1e-17 Score=120.38 Aligned_cols=83 Identities=24% Similarity=0.409 Sum_probs=75.5
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
..+.++|||+|||.++++++|+++|+.||.|.+|.++.++ .+|||||+|.+.++|.+|+. +++..+.|+.|+|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 4567899999999999999999999999999999998865 46899999999999999998 999999999999999
Q ss_pred ccccCCCC
Q 019152 129 AYASGQRE 136 (345)
Q Consensus 129 ~~~~~~~~ 136 (345)
+.++....
T Consensus 86 a~~~~~~~ 93 (99)
T 2dgs_A 86 AEPRDSKS 93 (99)
T ss_dssp CCCCCCCC
T ss_pred CCCCcccC
Confidence 98766543
No 76
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.76 E-value=4.1e-18 Score=119.47 Aligned_cols=83 Identities=55% Similarity=0.976 Sum_probs=76.7
Q ss_pred CCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 019152 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (345)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 218 (345)
.+.++|||+|||.++++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.|+
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35679999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred cCC
Q 019152 219 TKG 221 (345)
Q Consensus 219 ~~~ 221 (345)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 77
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.76 E-value=7.2e-19 Score=124.06 Aligned_cols=79 Identities=14% Similarity=0.288 Sum_probs=71.0
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccC-CceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHh-CCCccCCCceEEeec
Q 019152 56 CRSVYVGNIHTQVTEPLLQEVFSSTG-PVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSL-NGRHLFGQPIKVNWA 129 (345)
Q Consensus 56 ~~~l~v~~lp~~~t~~~l~~~f~~~G-~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l-~~~~~~g~~l~v~~~ 129 (345)
+++|||+|||.++|+++|+++|+.|| .|.+|++++++ ++|||||+|.+.++|.+|+..+ ++..+.|+.|+|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999998865 4689999999999999999877 456799999999999
Q ss_pred cccCC
Q 019152 130 YASGQ 134 (345)
Q Consensus 130 ~~~~~ 134 (345)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87654
No 78
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8.9e-18 Score=120.18 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=72.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHh--CCCccCCCceEEeecc
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSL--NGRHLFGQPIKVNWAY 130 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l--~~~~~~g~~l~v~~~~ 130 (345)
..++++|||+|||+++++++|+++|+.||.|.+|.++++ +|||||+|.+.++|.+|+..+ ++..+.|+.|+|.|+.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 345689999999999999999999999999999998876 689999999999999999876 5678999999999998
Q ss_pred ccCCC
Q 019152 131 ASGQR 135 (345)
Q Consensus 131 ~~~~~ 135 (345)
.+...
T Consensus 90 ~~~~~ 94 (101)
T 2cq1_A 90 HKELK 94 (101)
T ss_dssp CSSCC
T ss_pred cccCc
Confidence 76543
No 79
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.9e-18 Score=119.04 Aligned_cols=76 Identities=26% Similarity=0.461 Sum_probs=71.6
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhh-CCCCccccCCceEEEee
Q 019152 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMG-NTTQSSYLFGKQMKHDA 337 (345)
Q Consensus 259 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l-~~~~~~~~~g~~l~v~~ 337 (345)
..+.++|||+|||..+++++|+++|++|| .|..+.+.+++|+|||+|.+.++|.+|+..| ++. .++|++|+|+|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G--~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~---~~~g~~l~v~~ 83 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFG--EIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKL---IVNGRRLNVKW 83 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTS--CEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTC---EETTEECCEEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCC--CEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCe---eECCCEEEEEe
Confidence 34558999999999999999999999999 7999999999999999999999999999988 998 99999999999
Q ss_pred cc
Q 019152 338 MC 339 (345)
Q Consensus 338 ~~ 339 (345)
+|
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 86
No 80
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.9e-18 Score=125.69 Aligned_cols=78 Identities=13% Similarity=0.138 Sum_probs=71.9
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCC--CCccccCCceEEEe
Q 019152 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNT--TQSSYLFGKQMKHD 336 (345)
Q Consensus 259 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~--~~~~~~~g~~l~v~ 336 (345)
.+++++|||+|||+++++++|+++|++|| .|.+|.+.+++|+|||+|++.++|.+|++.|++ . .+.|++|+|.
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG--~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~---~l~Gr~l~V~ 102 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFG--KVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTP---VLRGQPIYIQ 102 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTS--CCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCC---CBTTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCc---eECCeEEEEE
Confidence 34568999999999999999999999999 899999999999999999999999999998874 5 7999999999
Q ss_pred ecccc
Q 019152 337 AMCGT 341 (345)
Q Consensus 337 ~~~~~ 341 (345)
|++..
T Consensus 103 ~a~~k 107 (119)
T 2ad9_A 103 FSNHK 107 (119)
T ss_dssp ECSSS
T ss_pred EccCC
Confidence 99753
No 81
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.76 E-value=1.3e-17 Score=123.33 Aligned_cols=85 Identities=20% Similarity=0.319 Sum_probs=76.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
..+.++|||+|||.++++++|+++|+.||.|.+|+++.++. +|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 44568899999999999999999999999999999998763 47999999999999999999999999999999999
Q ss_pred ccccCCCCC
Q 019152 129 AYASGQRED 137 (345)
Q Consensus 129 ~~~~~~~~~ 137 (345)
+.++.....
T Consensus 102 a~~~~~~~~ 110 (115)
T 2cpz_A 102 KRSKNDSKS 110 (115)
T ss_dssp CCCSCCCCC
T ss_pred cCCCCcCCC
Confidence 987765433
No 82
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.76 E-value=1.4e-17 Score=123.32 Aligned_cols=90 Identities=53% Similarity=0.928 Sum_probs=82.9
Q ss_pred CCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 019152 135 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (345)
Q Consensus 135 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~ 214 (345)
.....+.++|||+|||..+++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|++.|++..+.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456678999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EEeccCCCCC
Q 019152 215 CNWATKGAGN 224 (345)
Q Consensus 215 v~~~~~~~~~ 224 (345)
|.|+..+...
T Consensus 89 V~~a~~~~~~ 98 (115)
T 2dgo_A 89 TNWATRKPPA 98 (115)
T ss_dssp EEESSCCCCC
T ss_pred EEEccCCCCC
Confidence 9999876544
No 83
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.1e-17 Score=117.95 Aligned_cols=80 Identities=29% Similarity=0.493 Sum_probs=73.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecccc
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (345)
+.+.++|||+|||.++++++|+++|+.||.|.++.+. ++||||+|.+.++|.+|+..|++..+.|+.|+|.++.++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK 80 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence 4567899999999999999999999999999999997 579999999999999999999999999999999999877
Q ss_pred CCCC
Q 019152 133 GQRE 136 (345)
Q Consensus 133 ~~~~ 136 (345)
....
T Consensus 81 ~~~~ 84 (90)
T 2dnq_A 81 SKAS 84 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 84
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=6.5e-18 Score=122.42 Aligned_cols=83 Identities=23% Similarity=0.361 Sum_probs=75.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
..+.++|||+|||.++++++|+++|+.||.|.+|.+..++. +|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 55678999999999999999999999999999999988653 68999999999999999999999999999999999
Q ss_pred ccccCCC
Q 019152 129 AYASGQR 135 (345)
Q Consensus 129 ~~~~~~~ 135 (345)
+.+....
T Consensus 90 a~~~~~~ 96 (103)
T 2dnm_A 90 ARYGRRD 96 (103)
T ss_dssp CSSCCSC
T ss_pred CCcCCCC
Confidence 9876544
No 85
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.4e-17 Score=121.66 Aligned_cols=85 Identities=25% Similarity=0.493 Sum_probs=76.6
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC-----CCCeEEEEEeCHHHHHHHHHHh-CCCccCCCceE
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-----KSSYGFIHYFDRRSAAMAILSL-NGRHLFGQPIK 125 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~-----~~~~afv~f~~~~~A~~a~~~l-~~~~~~g~~l~ 125 (345)
...+.++|||+|||..+++++|+++|+.||.|.+|.++.+. .+|||||+|.+.++|.+|+..| ++..+.|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 35567889999999999999999999999999999998772 3689999999999999999999 99999999999
Q ss_pred EeeccccCCCC
Q 019152 126 VNWAYASGQRE 136 (345)
Q Consensus 126 v~~~~~~~~~~ 136 (345)
|.++.++....
T Consensus 91 v~~a~~~~~~~ 101 (107)
T 2cph_A 91 LEWADSEVTVQ 101 (107)
T ss_dssp EEECCCCCCCC
T ss_pred EEeCCCCCCCC
Confidence 99998776543
No 86
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.75 E-value=1.1e-17 Score=123.72 Aligned_cols=85 Identities=26% Similarity=0.545 Sum_probs=77.5
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEE
Q 019152 51 FDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (345)
Q Consensus 51 ~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (345)
....+.++|||+|||..+++++|+++|+.||.|.+|.++.++. +|||||+|.+.++|.+|+..|+|..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3466788999999999999999999999999999999998753 479999999999999999999999999999999
Q ss_pred eeccccCCC
Q 019152 127 NWAYASGQR 135 (345)
Q Consensus 127 ~~~~~~~~~ 135 (345)
.|+.++...
T Consensus 90 ~~a~~~~~~ 98 (115)
T 2dgo_A 90 NWATRKPPA 98 (115)
T ss_dssp EESSCCCCC
T ss_pred EEccCCCCC
Confidence 999876644
No 87
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.3e-18 Score=121.61 Aligned_cols=88 Identities=27% Similarity=0.440 Sum_probs=81.9
Q ss_pred CCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 019152 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (345)
Q Consensus 136 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v 215 (345)
....+.++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|+..|++..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNV 89 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 34556789999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 019152 216 NWATKGAG 223 (345)
Q Consensus 216 ~~~~~~~~ 223 (345)
.|+.++..
T Consensus 90 ~~a~~~~~ 97 (103)
T 2cq0_A 90 EWAKPSTN 97 (103)
T ss_dssp EESSCCCC
T ss_pred EECCCCCC
Confidence 99987654
No 88
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.75 E-value=1.6e-17 Score=120.81 Aligned_cols=83 Identities=20% Similarity=0.410 Sum_probs=75.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC---CCeEEEEEeCHHHHHHHHHHhCCCccCC---CceEE
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFG---QPIKV 126 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~---~~~afv~f~~~~~A~~a~~~l~~~~~~g---~~l~v 126 (345)
..+.++|||+|||.++++++|+++|+.||.|.+|.+..++. +|||||+|.+.++|.+|+..|+|..+.| +.|+|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 44578999999999999999999999999999999998764 5899999999999999999999999998 99999
Q ss_pred eeccccCCC
Q 019152 127 NWAYASGQR 135 (345)
Q Consensus 127 ~~~~~~~~~ 135 (345)
.++.++..+
T Consensus 92 ~~a~~~~~~ 100 (105)
T 2dnh_A 92 KFADTDKES 100 (105)
T ss_dssp EESCSSCCC
T ss_pred EECccCccc
Confidence 999877654
No 89
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.4e-18 Score=124.27 Aligned_cols=82 Identities=17% Similarity=0.204 Sum_probs=73.5
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhC--CCccCCCceEEeecc
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLN--GRHLFGQPIKVNWAY 130 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~--~~~~~g~~l~v~~~~ 130 (345)
..++++|||+|||+++|+++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|+..++ +..+.|++|+|.|+.
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 445689999999999999999999999999999999887 5899999999999999999887 468999999999998
Q ss_pred ccCCCC
Q 019152 131 ASGQRE 136 (345)
Q Consensus 131 ~~~~~~ 136 (345)
++....
T Consensus 106 ~k~~~~ 111 (119)
T 2ad9_A 106 HKELKT 111 (119)
T ss_dssp SSSCCC
T ss_pred CCCCCc
Confidence 765443
No 90
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=7.4e-18 Score=119.99 Aligned_cols=79 Identities=28% Similarity=0.445 Sum_probs=72.6
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEe
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (345)
.+.+.++|||+|||.++++++|+++|+.||.|.++.+..++. +|||||+|.+.++|.+|+..|||..+.|+.|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 355678899999999999999999999999999999988643 5899999999999999999999999999999999
Q ss_pred ecc
Q 019152 128 WAY 130 (345)
Q Consensus 128 ~~~ 130 (345)
|++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 873
No 91
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.75 E-value=6.1e-18 Score=123.48 Aligned_cols=79 Identities=15% Similarity=0.263 Sum_probs=73.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 54 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
.+.++|||+|||+++++++|+++|+.||.|.+|.++.++. +|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4568999999999999999999999999999999998764 589999999999999999999999999999999998
Q ss_pred ccc
Q 019152 130 YAS 132 (345)
Q Consensus 130 ~~~ 132 (345)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 643
No 92
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.75 E-value=5.8e-18 Score=118.14 Aligned_cols=81 Identities=35% Similarity=0.530 Sum_probs=77.1
Q ss_pred CCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 019152 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (345)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 218 (345)
.+.++|||+|||.++++++|+++|++||.|..+.+++++.++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 45679999999999999999999999999999999999889999999999999999999999999999999999999997
Q ss_pred c
Q 019152 219 T 219 (345)
Q Consensus 219 ~ 219 (345)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 93
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.2e-18 Score=124.57 Aligned_cols=81 Identities=26% Similarity=0.401 Sum_probs=74.7
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC--CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~--~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
.....++|||+|||.++++++|+++|+.||.|.++.+..++ .+|||||+|.+.++|.+|+..|+|..+.|+.|+|.++
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 35567899999999999999999999999999999998775 3689999999999999999999999999999999998
Q ss_pred ccc
Q 019152 130 YAS 132 (345)
Q Consensus 130 ~~~ 132 (345)
.++
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 764
No 94
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9e-18 Score=120.04 Aligned_cols=86 Identities=31% Similarity=0.654 Sum_probs=80.1
Q ss_pred CCceeEEECCCCccCCHHHHHHHhccCCCccee-EeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 019152 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDA-RVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (345)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~ 217 (345)
.+.++|||+|||.++++++|+++|+.||.|..+ .+++++.++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 346799999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 019152 218 ATKGAGN 224 (345)
Q Consensus 218 ~~~~~~~ 224 (345)
+.++...
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9776543
No 95
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1e-17 Score=121.41 Aligned_cols=86 Identities=24% Similarity=0.358 Sum_probs=77.8
Q ss_pred CCCCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceE
Q 019152 50 GFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIK 125 (345)
Q Consensus 50 ~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~ 125 (345)
.....+.++|||+|||.++++++|+++|+.||.|.+|.++.++. +|||||+|.+.++|.+|+..|+|..|.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 33466789999999999999999999999999999999998753 47999999999999999999999999999999
Q ss_pred EeeccccCCC
Q 019152 126 VNWAYASGQR 135 (345)
Q Consensus 126 v~~~~~~~~~ 135 (345)
|.++.++...
T Consensus 89 v~~a~~~~~~ 98 (103)
T 2cq0_A 89 VEWAKPSTNS 98 (103)
T ss_dssp EEESSCCCCS
T ss_pred EEECCCCCCC
Confidence 9999876544
No 96
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1e-17 Score=119.59 Aligned_cols=86 Identities=34% Similarity=0.454 Sum_probs=80.3
Q ss_pred CCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 019152 135 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (345)
Q Consensus 135 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~ 214 (345)
.....+.++|||+|||..+++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|+..|++..+.|+.|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456678999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEeccC
Q 019152 215 CNWATK 220 (345)
Q Consensus 215 v~~~~~ 220 (345)
|.|++.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999864
No 97
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.75 E-value=9.3e-18 Score=124.80 Aligned_cols=79 Identities=20% Similarity=0.331 Sum_probs=72.5
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEe
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (345)
...+.++|||+|||.++++++|+++|+.||.|.+|+++.++ .+|||||+|.+.++|.+|+..|||..+.|+.|+|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45667899999999999999999999999999999998774 36899999999999999999999999999999999
Q ss_pred ecc
Q 019152 128 WAY 130 (345)
Q Consensus 128 ~~~ 130 (345)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 873
No 98
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.75 E-value=1.4e-17 Score=121.42 Aligned_cols=85 Identities=20% Similarity=0.362 Sum_probs=76.5
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCcc---CCCce
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHL---FGQPI 124 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~---~g~~l 124 (345)
.+.+.++|||+|||.++++++|+++|+.||.|.+|.++.++ .+|||||+|.+.++|.+|+..|++..+ .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 35567899999999999999999999999999999998864 368999999999999999999999887 88999
Q ss_pred EEeeccccCCCC
Q 019152 125 KVNWAYASGQRE 136 (345)
Q Consensus 125 ~v~~~~~~~~~~ 136 (345)
+|.++.++....
T Consensus 89 ~v~~a~~~~~~~ 100 (106)
T 2dgp_A 89 QVKPADSESRGG 100 (106)
T ss_dssp EEEECCCCSCCC
T ss_pred EEEECCcccccC
Confidence 999998766543
No 99
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-17 Score=119.89 Aligned_cols=86 Identities=27% Similarity=0.349 Sum_probs=80.5
Q ss_pred CCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 019152 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (345)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~ 217 (345)
..+.++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34568999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 019152 218 ATKGAG 223 (345)
Q Consensus 218 ~~~~~~ 223 (345)
+..+..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987654
No 100
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.75 E-value=7.4e-18 Score=120.42 Aligned_cols=82 Identities=27% Similarity=0.603 Sum_probs=78.2
Q ss_pred ceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 019152 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (345)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 220 (345)
+++|||+|||.++++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|.+|++.|++..++|+.|.|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57999999999999999999999999999999999988899999999999999999999999999999999999999977
Q ss_pred CC
Q 019152 221 GA 222 (345)
Q Consensus 221 ~~ 222 (345)
+.
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 101
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=120.00 Aligned_cols=81 Identities=23% Similarity=0.416 Sum_probs=74.3
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccc
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (345)
...+.++|||+|||.++++++|+++|+.||.|.+|.+.++ +|||||+|.+.++|.+|+..|+|..+.|+.|+|.++.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~--kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD--KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT--TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC--CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 3556789999999999999999999999999999999865 57999999999999999999999999999999999987
Q ss_pred cCC
Q 019152 132 SGQ 134 (345)
Q Consensus 132 ~~~ 134 (345)
+..
T Consensus 89 ~~~ 91 (99)
T 2cpj_A 89 SAS 91 (99)
T ss_dssp CSC
T ss_pred CCC
Confidence 653
No 102
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=6.7e-18 Score=121.19 Aligned_cols=84 Identities=24% Similarity=0.477 Sum_probs=75.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC-------CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEE
Q 019152 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-------SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (345)
Q Consensus 54 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~-------~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (345)
.+.++|||+|||.++++++|+++|+.||.|.+|.+..++. +|||||+|.+.++|.+|+..|+|..+.|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4568899999999999999999999999999999987643 479999999999999999999999999999999
Q ss_pred eeccccCCCCC
Q 019152 127 NWAYASGQRED 137 (345)
Q Consensus 127 ~~~~~~~~~~~ 137 (345)
.++.++.....
T Consensus 83 ~~a~~~~~~~~ 93 (98)
T 2cpf_A 83 RISERATKPAS 93 (98)
T ss_dssp ECSSCSSCCCC
T ss_pred EEccCCCCCCC
Confidence 99987765443
No 103
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.6e-17 Score=122.13 Aligned_cols=84 Identities=19% Similarity=0.362 Sum_probs=76.6
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhC------CCccCC
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLN------GRHLFG 121 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~------~~~~~g 121 (345)
.+.+.++|||+|||.++++++|+++|+.||.|.+|.++.++ .+|||||+|.+.++|.+|+..++ +..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 45667899999999999999999999999999999999874 36899999999999999999999 999999
Q ss_pred CceEEeeccccCCC
Q 019152 122 QPIKVNWAYASGQR 135 (345)
Q Consensus 122 ~~l~v~~~~~~~~~ 135 (345)
+.|+|.++.++...
T Consensus 91 ~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 91 RQLKVDLAVTRDEA 104 (111)
T ss_dssp CEEEEECCCCCCCC
T ss_pred EEEEEEECCCCccC
Confidence 99999999876544
No 104
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=119.30 Aligned_cols=85 Identities=31% Similarity=0.539 Sum_probs=79.8
Q ss_pred CCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 019152 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (345)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 218 (345)
.++++|||+|||.++++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 35679999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 019152 219 TKGAG 223 (345)
Q Consensus 219 ~~~~~ 223 (345)
..+..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 77644
No 105
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.7e-18 Score=122.15 Aligned_cols=85 Identities=27% Similarity=0.445 Sum_probs=76.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
..+.++|||+|||.++++++|+++|+.||.|.+|.++.++ .+|||||+|.+.++|.+|+..|+|..+.|+.|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 4567889999999999999999999999999999998764 468999999999999999999999999999999999
Q ss_pred ccccCCCCC
Q 019152 129 AYASGQRED 137 (345)
Q Consensus 129 ~~~~~~~~~ 137 (345)
+.++.....
T Consensus 89 a~~~~~~~~ 97 (102)
T 2cqb_A 89 AKPMRIKES 97 (102)
T ss_dssp CCCCCCCCC
T ss_pred CCCCCCCCC
Confidence 987765443
No 106
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.1e-17 Score=118.28 Aligned_cols=79 Identities=18% Similarity=0.334 Sum_probs=73.0
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccC--CCceEEeecc
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLF--GQPIKVNWAY 130 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~--g~~l~v~~~~ 130 (345)
+.++++|||+|||.++++++|+++|+.||.|.+|.+..+ +|||||+|.+.++|.+|+..||+..+. |+.|+|.|+.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 445688999999999999999999999999999999866 679999999999999999999999999 9999999998
Q ss_pred ccC
Q 019152 131 ASG 133 (345)
Q Consensus 131 ~~~ 133 (345)
++.
T Consensus 92 ~~~ 94 (97)
T 1why_A 92 SGP 94 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 107
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1e-17 Score=122.07 Aligned_cols=81 Identities=27% Similarity=0.560 Sum_probs=74.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
..+.++|||+|||..+++++|+++|+.||.|.+|.+..++. +|||||+|.+.++|.+|+..|+|..+.|+.|+|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 45668899999999999999999999999999999998764 58999999999999999999999999999999999
Q ss_pred ccccC
Q 019152 129 AYASG 133 (345)
Q Consensus 129 ~~~~~ 133 (345)
+.++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 97664
No 108
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.75 E-value=6.9e-18 Score=133.10 Aligned_cols=125 Identities=16% Similarity=0.286 Sum_probs=80.2
Q ss_pred EEEeCHHHHHHHHHHhCCCccC--CCceEEeeccc-----------------cCCCCCCCCceeEEECCCCccCCHHHHH
Q 019152 99 IHYFDRRSAAMAILSLNGRHLF--GQPIKVNWAYA-----------------SGQREDTSGHFNIFVGDLSPEVTDATLF 159 (345)
Q Consensus 99 v~f~~~~~A~~a~~~l~~~~~~--g~~l~v~~~~~-----------------~~~~~~~~~~~~l~v~~lp~~~~~~~l~ 159 (345)
.+|.+.++|..|+..+++.... |+.....+... ........+.++|||+|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 6788999999999888876654 55544443211 0112233456789999999999999999
Q ss_pred HHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCCCC
Q 019152 160 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAG 223 (345)
Q Consensus 160 ~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~ 223 (345)
++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|++..|.|+.|.|.|+..+..
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 9999999999999999988999999999999999999999999999999999999999977543
No 109
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.75 E-value=7e-18 Score=118.59 Aligned_cols=79 Identities=20% Similarity=0.343 Sum_probs=73.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC-----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 55 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~-----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
.+++|||+|||.++++++|+++|+.||.|.++.+..+. .+|||||+|.+.++|.+|+..|||..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 35789999999999999999999999999999998876 5789999999999999999999999999999999999
Q ss_pred cccC
Q 019152 130 YASG 133 (345)
Q Consensus 130 ~~~~ 133 (345)
.++.
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 110
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.75 E-value=3.6e-18 Score=124.28 Aligned_cols=81 Identities=14% Similarity=0.118 Sum_probs=73.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccC-CceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccc
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTG-PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G-~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (345)
+...++|||+|||+++++++|+++|+.|| .|..+.+..++.+|||||+|.+.++|.+|+..|||..+.|+.|+|.++..
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 34567899999999999999999999999 89999987667789999999999999999999999999999999999865
Q ss_pred cC
Q 019152 132 SG 133 (345)
Q Consensus 132 ~~ 133 (345)
+.
T Consensus 105 ~p 106 (111)
T 2jvr_A 105 PP 106 (111)
T ss_dssp --
T ss_pred CC
Confidence 43
No 111
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.75 E-value=1.5e-17 Score=122.99 Aligned_cols=88 Identities=27% Similarity=0.465 Sum_probs=81.4
Q ss_pred CCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 019152 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (345)
Q Consensus 136 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v 215 (345)
....+.++|||+|||.++++++|+++|+.||.|..++++.++.++.++|||||+|.+.++|.+|++.|++..+.|+.|.|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34455689999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 019152 216 NWATKGAG 223 (345)
Q Consensus 216 ~~~~~~~~ 223 (345)
.|+.++..
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpz_A 100 QLKRSKND 107 (115)
T ss_dssp ECCCCSCC
T ss_pred EEcCCCCc
Confidence 99977644
No 112
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.75 E-value=5.2e-18 Score=118.96 Aligned_cols=79 Identities=25% Similarity=0.594 Sum_probs=71.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 54 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
.+.++|||+|||.++++++|+++|+.||.|.++.+..++. +|||||+|.+.++|.+|+..|+|..+.|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 3468899999999999999999999999999999998753 579999999999999999999999999999999999
Q ss_pred ccc
Q 019152 130 YAS 132 (345)
Q Consensus 130 ~~~ 132 (345)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 113
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=2.3e-17 Score=118.82 Aligned_cols=81 Identities=16% Similarity=0.333 Sum_probs=74.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC---CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~---~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
..+.++|||+|||.++++++|+++|+.||.|.+|.+..++. +|||||+|.+.++|.+|+..|+|..+.|+.|+|.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 45668899999999999999999999999999999998763 489999999999999999999999999999999999
Q ss_pred cccC
Q 019152 130 YASG 133 (345)
Q Consensus 130 ~~~~ 133 (345)
.++.
T Consensus 94 ~~~~ 97 (100)
T 2do4_A 94 NSGP 97 (100)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8765
No 114
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.75 E-value=2.2e-17 Score=126.54 Aligned_cols=84 Identities=33% Similarity=0.564 Sum_probs=76.9
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEe
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (345)
.+...++|||+|||.++++++|+++|+.||.|.+|.++.++. +|||||+|.+.++|.+|+..|||..+.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 355678999999999999999999999999999999998764 5899999999999999999999999999999999
Q ss_pred eccccCCC
Q 019152 128 WAYASGQR 135 (345)
Q Consensus 128 ~~~~~~~~ 135 (345)
++.++..+
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99876544
No 115
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4.9e-18 Score=123.08 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=71.2
Q ss_pred CCCcceEEEcCCCcc-cCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEee
Q 019152 259 NPQYTTVYVGNLAPE-VTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDA 337 (345)
Q Consensus 259 ~~~~~~l~V~nlp~~-~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~ 337 (345)
..++++|||+|||++ +++++|+++|++|| .|.+|.+.+++|+|||+|++.++|.+|++.|++... .+.||+|+|.|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG--~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~-~l~Gr~l~V~~ 98 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYG--KIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKAL-WFQGRCVKVDL 98 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTS--CCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCC-CSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcC--CEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCc-eECCEEEEEEE
Confidence 345689999999998 99999999999999 899999999999999999999999999998875411 69999999999
Q ss_pred ccc
Q 019152 338 MCG 340 (345)
Q Consensus 338 ~~~ 340 (345)
++.
T Consensus 99 a~~ 101 (112)
T 1x4f_A 99 SEK 101 (112)
T ss_dssp ECS
T ss_pred Ccc
Confidence 874
No 116
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.5e-17 Score=118.68 Aligned_cols=81 Identities=25% Similarity=0.329 Sum_probs=74.3
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEE
Q 019152 51 FDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (345)
Q Consensus 51 ~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (345)
..+.+.++|||+|||.++++++|+++|+.||.|.++.+..++. +|||||+|.+.++|.+|+..|+|..+.|+.|+|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 89 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 89 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3466788999999999999999999999999999999998754 479999999999999999999999999999999
Q ss_pred eeccc
Q 019152 127 NWAYA 131 (345)
Q Consensus 127 ~~~~~ 131 (345)
.++..
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99853
No 117
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.9e-17 Score=119.27 Aligned_cols=85 Identities=18% Similarity=0.364 Sum_probs=79.2
Q ss_pred CCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 019152 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (345)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~ 216 (345)
...+.++|||+|||.++++++|+++|+.||.|..+.+..++ ++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34556799999999999999999999999999999999986 89999999999999999999999999999999999999
Q ss_pred eccCCC
Q 019152 217 WATKGA 222 (345)
Q Consensus 217 ~~~~~~ 222 (345)
++.++.
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 997754
No 118
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-17 Score=120.15 Aligned_cols=87 Identities=32% Similarity=0.463 Sum_probs=80.9
Q ss_pred CCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 019152 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (345)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~ 217 (345)
..+.++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 34567999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 019152 218 ATKGAGN 224 (345)
Q Consensus 218 ~~~~~~~ 224 (345)
+.+....
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 119
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.74 E-value=1.3e-17 Score=121.58 Aligned_cols=86 Identities=28% Similarity=0.567 Sum_probs=80.6
Q ss_pred CCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 019152 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (345)
Q Consensus 136 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v 215 (345)
....+.++|||+|||..+++++|+++|+.||.|..+.+++++.+|.++|||||+|.+.++|.+|++.|++..+.|+.|.|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34556689999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EeccCC
Q 019152 216 NWATKG 221 (345)
Q Consensus 216 ~~~~~~ 221 (345)
.++.++
T Consensus 101 ~~a~~k 106 (108)
T 2jrs_A 101 GHVTER 106 (108)
T ss_dssp ECSCSS
T ss_pred EEcccC
Confidence 998765
No 120
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=119.58 Aligned_cols=84 Identities=27% Similarity=0.361 Sum_probs=78.4
Q ss_pred CCCCCceeEEECCCCccCCHHHHHHHhccCCCcce--------eEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 019152 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD--------ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 207 (345)
Q Consensus 136 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~ 207 (345)
......++|||+|||.++++++|+++|+.||.|.. ++++.++.+|.++|||||+|.+.++|.+|++.|++..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34455689999999999999999999999999999 9999998899999999999999999999999999999
Q ss_pred eCCeeEEEEecc
Q 019152 208 LGSRQIRCNWAT 219 (345)
Q Consensus 208 ~~~~~i~v~~~~ 219 (345)
+.|+.|+|.+++
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999874
No 121
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=119.38 Aligned_cols=78 Identities=24% Similarity=0.363 Sum_probs=72.1
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceE--------EEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccC
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEG--------CKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLF 120 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~--------v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~ 120 (345)
+.+.++|||+|||.++++++|+++|+.||.|.+ +.++.++. +|||||+|.+.++|.+|+..|+|..+.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 556789999999999999999999999999999 99988754 579999999999999999999999999
Q ss_pred CCceEEeecc
Q 019152 121 GQPIKVNWAY 130 (345)
Q Consensus 121 g~~l~v~~~~ 130 (345)
|+.|+|.++.
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999873
No 122
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.74 E-value=4.8e-18 Score=125.76 Aligned_cols=104 Identities=16% Similarity=0.269 Sum_probs=92.4
Q ss_pred CCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 019152 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (345)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~ 217 (345)
..++++|||+|||..+++++|+++|+.||.|..+.++.+ +.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345679999999999999999999999999999999854 56689999999999999999999999999999999999
Q ss_pred ccCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceEEEcCCCcccCHHHHHHHhhhcC
Q 019152 218 ATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHSLG 287 (345)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G 287 (345)
+.+.... .+++...++++|.++|++||
T Consensus 82 a~~~~~~-------------------------------------------~~~~~~~~~~~l~~~~~~~g 108 (115)
T 3lqv_A 82 YNANRAF-------------------------------------------QKMDTKKKEEQLKLLKEKYG 108 (115)
T ss_dssp CCHHHHT-------------------------------------------TTSCHHHHHHHHHHHHHHHC
T ss_pred ecCChhh-------------------------------------------hhhhHhHhHHHHHHHHHHhC
Confidence 8653210 46788899999999999999
No 123
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=121.75 Aligned_cols=86 Identities=22% Similarity=0.438 Sum_probs=80.3
Q ss_pred CCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 019152 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (345)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~ 216 (345)
...++++|||+|||..+++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34456899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eccCCC
Q 019152 217 WATKGA 222 (345)
Q Consensus 217 ~~~~~~ 222 (345)
|+..+.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 987653
No 124
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.3e-17 Score=118.61 Aligned_cols=85 Identities=22% Similarity=0.448 Sum_probs=79.4
Q ss_pred CCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 019152 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (345)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~ 217 (345)
..+.++|||+|||..+++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|++ |++..+.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 3456899999999999999999999999999999999998889999999999999999999998 999999999999999
Q ss_pred ccCCCC
Q 019152 218 ATKGAG 223 (345)
Q Consensus 218 ~~~~~~ 223 (345)
+.++..
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 987654
No 125
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=118.31 Aligned_cols=83 Identities=25% Similarity=0.414 Sum_probs=77.9
Q ss_pred CCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 019152 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (345)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~ 216 (345)
...+.++|||+|||.++++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34556799999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred ecc
Q 019152 217 WAT 219 (345)
Q Consensus 217 ~~~ 219 (345)
|++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 974
No 126
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.74 E-value=2.2e-18 Score=121.58 Aligned_cols=81 Identities=16% Similarity=0.255 Sum_probs=72.5
Q ss_pred eeEEECCCCccCCHHHHHHHhccCC--CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 019152 142 FNIFVGDLSPEVTDATLFACFSVYP--SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (345)
Q Consensus 142 ~~l~v~~lp~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 219 (345)
.+|||+|||.++++++|+++|+.|| .|.+++++.++.+|.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999998899999999999999999999999999999999999999987
Q ss_pred CCC
Q 019152 220 KGA 222 (345)
Q Consensus 220 ~~~ 222 (345)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 127
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.6e-17 Score=120.17 Aligned_cols=80 Identities=14% Similarity=0.173 Sum_probs=74.1
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCC-----CceEEe
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFG-----QPIKVN 127 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g-----~~l~v~ 127 (345)
+...++|||+|||+++++++|+++|+.||.|.+|.++.+ |||||+|.+.++|.+|+..|||..|.| +.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 345788999999999999999999999999999999887 899999999999999999999999999 999999
Q ss_pred eccccCCC
Q 019152 128 WAYASGQR 135 (345)
Q Consensus 128 ~~~~~~~~ 135 (345)
++.++...
T Consensus 89 ~a~~~~~~ 96 (108)
T 1x4c_A 89 VDGPRSPS 96 (108)
T ss_dssp ESSCCSCC
T ss_pred eCCCCCCC
Confidence 99876543
No 128
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-17 Score=118.54 Aligned_cols=81 Identities=22% Similarity=0.230 Sum_probs=74.2
Q ss_pred CCcceEEEeCCCCCCCHHHHH----HHHhccCCceEEEEeecCC-CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 54 STCRSVYVGNIHTQVTEPLLQ----EVFSSTGPVEGCKLIRKDK-SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 54 ~~~~~l~v~~lp~~~t~~~l~----~~f~~~G~v~~v~~~~~~~-~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
.+.++|||+|||.++++++|+ ++|+.||.|.+|.++.++. +|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356789999999999999999 9999999999999997653 68999999999999999999999999999999999
Q ss_pred ccccCC
Q 019152 129 AYASGQ 134 (345)
Q Consensus 129 ~~~~~~ 134 (345)
+.+...
T Consensus 87 a~~~~~ 92 (96)
T 2dgx_A 87 ATGASG 92 (96)
T ss_dssp CCCSSC
T ss_pred cCCCCC
Confidence 976653
No 129
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.2e-17 Score=122.36 Aligned_cols=87 Identities=25% Similarity=0.403 Sum_probs=77.0
Q ss_pred CCCCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceE
Q 019152 50 GFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIK 125 (345)
Q Consensus 50 ~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~ 125 (345)
.....+.++|||+|||.++++++|+++|+.||.|.+|.++.++ .+|||||+|.+.++|.+|+..+++ .|.|+.|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 3346677899999999999999999999999999999998875 368999999999999999999998 89999999
Q ss_pred EeeccccCCCCC
Q 019152 126 VNWAYASGQRED 137 (345)
Q Consensus 126 v~~~~~~~~~~~ 137 (345)
|.++........
T Consensus 90 V~~a~~~~~~~~ 101 (116)
T 2cqd_A 90 VNLAYLGAKPRS 101 (116)
T ss_dssp EEESTTTCCCCC
T ss_pred EEEcccCCCccc
Confidence 999977654443
No 130
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.74 E-value=1.2e-17 Score=119.38 Aligned_cols=80 Identities=31% Similarity=0.464 Sum_probs=73.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecc
Q 019152 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (345)
Q Consensus 55 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (345)
++++|||+|||.++++++|+++|+.||.|.++.+..++. +|||||+|.+.++|.+|+..|+|..+.|+.|+|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 357899999999999999999999999999999988753 6899999999999999999999999999999999998
Q ss_pred ccCC
Q 019152 131 ASGQ 134 (345)
Q Consensus 131 ~~~~ 134 (345)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7653
No 131
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2e-17 Score=120.28 Aligned_cols=88 Identities=26% Similarity=0.402 Sum_probs=81.5
Q ss_pred CCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 019152 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (345)
Q Consensus 136 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v 215 (345)
....+.++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|+..|++..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34456689999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 019152 216 NWATKGAG 223 (345)
Q Consensus 216 ~~~~~~~~ 223 (345)
.++.....
T Consensus 90 ~~a~~~~~ 97 (105)
T 1x5u_A 90 NKASAHNK 97 (105)
T ss_dssp EETTTTSC
T ss_pred EECCCCCc
Confidence 99977644
No 132
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.5e-17 Score=119.61 Aligned_cols=79 Identities=33% Similarity=0.558 Sum_probs=74.1
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeec
Q 019152 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAM 338 (345)
Q Consensus 259 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~ 338 (345)
.++.++|||+|||..+++++|+++|++|| .|..+.+.+++++|||+|.+.++|.+|++.|||. .++|++|+|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~---~~~g~~l~v~~a 86 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYG--KAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNM---PLRGKQLRVRFA 86 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTC--CCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTC---CBTTBCCEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcC--CeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCC---EeCCceEEEEEc
Confidence 34558999999999999999999999999 7999999999999999999999999999999999 999999999999
Q ss_pred cccc
Q 019152 339 CGTL 342 (345)
Q Consensus 339 ~~~~ 342 (345)
+..-
T Consensus 87 ~~~~ 90 (99)
T 2cpj_A 87 CHSA 90 (99)
T ss_dssp SCCS
T ss_pred CCCC
Confidence 8754
No 133
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.3e-17 Score=119.68 Aligned_cols=82 Identities=26% Similarity=0.405 Sum_probs=74.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC-----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEe
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK-----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~-----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (345)
..+.++|||+|||.++++++|+++|+.|| |.+|.++.++. +|||||+|.+.++|.+|+ .|++..+.|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 45668999999999999999999999999 99999988753 689999999999999999 999999999999999
Q ss_pred eccccCCCC
Q 019152 128 WAYASGQRE 136 (345)
Q Consensus 128 ~~~~~~~~~ 136 (345)
++.++....
T Consensus 90 ~a~~~~~~~ 98 (104)
T 1wi8_A 90 VADQAQDKD 98 (104)
T ss_dssp ECCCCCCCC
T ss_pred EccCCCCCC
Confidence 998776543
No 134
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2.5e-17 Score=117.73 Aligned_cols=81 Identities=21% Similarity=0.283 Sum_probs=74.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEE-EEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccc
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGC-KLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v-~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (345)
...+++|||+|||+++++++|+++|+.||.|.++ .++.++.++.|||+|.+.++|.+|+..|||..+.|+.|+|.++.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 4456889999999999999999999999999999 588888777899999999999999999999999999999999987
Q ss_pred cC
Q 019152 132 SG 133 (345)
Q Consensus 132 ~~ 133 (345)
+.
T Consensus 92 ~~ 93 (96)
T 2e44_A 92 EM 93 (96)
T ss_dssp CC
T ss_pred cc
Confidence 63
No 135
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=119.33 Aligned_cols=83 Identities=28% Similarity=0.570 Sum_probs=75.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceEE-EEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGC-KLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 54 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v-~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
++.++|||+|||.++++++|+++|+.||.|.++ .++.++ .+|||||+|.+.++|.+|+..|+|..+.|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456899999999999999999999999999999 998864 368999999999999999999999999999999999
Q ss_pred ccccCCCC
Q 019152 129 AYASGQRE 136 (345)
Q Consensus 129 ~~~~~~~~ 136 (345)
+.++....
T Consensus 83 a~~~~~~~ 90 (96)
T 1x5t_A 83 AFKKDSKG 90 (96)
T ss_dssp SCCCCCCC
T ss_pred ecccCCCC
Confidence 98766443
No 136
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.74 E-value=1.4e-17 Score=115.66 Aligned_cols=77 Identities=23% Similarity=0.512 Sum_probs=71.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecccc
Q 019152 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (345)
Q Consensus 57 ~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (345)
.+|||+|||.++++++|+++|+.||.|.++.++.++. +|||||+|.+.++|.+|+..|+|..+.|+.|+|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 6899999999999999999999999999999998753 589999999999999999999999999999999999765
Q ss_pred C
Q 019152 133 G 133 (345)
Q Consensus 133 ~ 133 (345)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 137
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.74 E-value=2.6e-17 Score=119.98 Aligned_cols=81 Identities=32% Similarity=0.571 Sum_probs=74.6
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
+.++++|||+|||..+++++|+++|+.||.|.+|.+..++. +|||||+|.+.++|.+|+..|+|..+.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 45668999999999999999999999999999999998754 58999999999999999999999999999999999
Q ss_pred ccccC
Q 019152 129 AYASG 133 (345)
Q Consensus 129 ~~~~~ 133 (345)
+.++.
T Consensus 103 a~~k~ 107 (108)
T 2jrs_A 103 VTERT 107 (108)
T ss_dssp SCSSC
T ss_pred cccCC
Confidence 97653
No 138
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.73 E-value=2e-17 Score=118.19 Aligned_cols=76 Identities=20% Similarity=0.352 Sum_probs=70.5
Q ss_pred CCCcceEEEeCCCC-CCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccc
Q 019152 53 PSTCRSVYVGNIHT-QVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (345)
Q Consensus 53 ~~~~~~l~v~~lp~-~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (345)
..+.++|||+|||. ++++++|+++|+.||.|.++.+. +|||||+|.+.++|.+|+..|+|..+.|+.|+|.++..
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 44678999999998 99999999999999999999883 68999999999999999999999999999999999875
Q ss_pred c
Q 019152 132 S 132 (345)
Q Consensus 132 ~ 132 (345)
+
T Consensus 95 ~ 95 (97)
T 2xnq_A 95 N 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 139
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=2.9e-18 Score=123.81 Aligned_cols=77 Identities=26% Similarity=0.428 Sum_probs=71.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccc
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (345)
+...++|||+|||.++++++|+++|+.||.|.++.+. +.+|||||+|.+.++|.+|+..|+|..+.|+.|+|.|+.+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 3456899999999999999999999999999999997 4568999999999999999999999999999999999865
No 140
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.73 E-value=4.2e-18 Score=122.48 Aligned_cols=82 Identities=23% Similarity=0.277 Sum_probs=77.7
Q ss_pred CCceeEEECCCCc------cCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC-e
Q 019152 139 SGHFNIFVGDLSP------EVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS-R 211 (345)
Q Consensus 139 ~~~~~l~v~~lp~------~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~-~ 211 (345)
..+++|||+|||. ++++++|+++|++||.|.++.+++++.+|.++|||||+|.+.++|.+|++.|++..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3457999999999 99999999999999999999999998889999999999999999999999999999999 9
Q ss_pred eEEEEeccC
Q 019152 212 QIRCNWATK 220 (345)
Q Consensus 212 ~i~v~~~~~ 220 (345)
.|.|.++.+
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999999865
No 141
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=120.84 Aligned_cols=87 Identities=29% Similarity=0.453 Sum_probs=80.7
Q ss_pred CCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 019152 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (345)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~ 216 (345)
...+.++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34456899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eccCCCC
Q 019152 217 WATKGAG 223 (345)
Q Consensus 217 ~~~~~~~ 223 (345)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2dnm_A 89 VARYGRR 95 (103)
T ss_dssp ECSSCCS
T ss_pred ECCcCCC
Confidence 9986543
No 142
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.5e-17 Score=119.30 Aligned_cols=80 Identities=16% Similarity=0.198 Sum_probs=71.4
Q ss_pred CCCcceEEEeCCCCC-CCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhC--CCccCCCceEEeec
Q 019152 53 PSTCRSVYVGNIHTQ-VTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLN--GRHLFGQPIKVNWA 129 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~-~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~--~~~~~g~~l~v~~~ 129 (345)
..++++|||+|||++ +++++|+++|+.||.|.+|.+++ .+|||||+|.+.++|.+|+..|+ +..+.|+.|+|.++
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a 99 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR--MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLS 99 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEC
Confidence 556789999999998 99999999999999999999975 46899999999999999999885 45699999999999
Q ss_pred cccCC
Q 019152 130 YASGQ 134 (345)
Q Consensus 130 ~~~~~ 134 (345)
..+..
T Consensus 100 ~~~~~ 104 (112)
T 1x4f_A 100 EKYKK 104 (112)
T ss_dssp CSCSS
T ss_pred ccccc
Confidence 76553
No 143
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.73 E-value=1.2e-17 Score=119.16 Aligned_cols=78 Identities=33% Similarity=0.623 Sum_probs=72.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC---CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~---~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
+.+.++|||+|||..+++++|+++|+.||.|.+|.+..++. +|||||+|.+.++|.+|+..|+|..+.|+.|+|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 55678999999999999999999999999999999998754 579999999999999999999999999999999988
Q ss_pred c
Q 019152 130 Y 130 (345)
Q Consensus 130 ~ 130 (345)
.
T Consensus 93 ~ 93 (95)
T 2ywk_A 93 S 93 (95)
T ss_dssp C
T ss_pred C
Confidence 5
No 144
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.73 E-value=2.9e-17 Score=121.34 Aligned_cols=82 Identities=26% Similarity=0.491 Sum_probs=75.5
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC---CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
..+.++|||+|||.++++++|+++|+.||.|.+|.+..++ .+|||||+|.+.++|.+|+..|+|..+.|+.|+|.++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 4567899999999999999999999999999999999875 4589999999999999999999999999999999999
Q ss_pred cccCC
Q 019152 130 YASGQ 134 (345)
Q Consensus 130 ~~~~~ 134 (345)
.++..
T Consensus 84 ~~~~~ 88 (116)
T 2fy1_A 84 KKPSF 88 (116)
T ss_dssp CCSSC
T ss_pred CCCCC
Confidence 86653
No 145
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.73 E-value=1.9e-17 Score=115.55 Aligned_cols=78 Identities=28% Similarity=0.473 Sum_probs=71.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
+.+.++|||+|||.++++++|+++|+.||.|.++.+..++ .+|||||+|.+.++|.+|+..|||..+.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4467899999999999999999999999999999998764 368999999999999999999999999999999998
Q ss_pred cc
Q 019152 129 AY 130 (345)
Q Consensus 129 ~~ 130 (345)
+.
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 146
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.1e-17 Score=120.95 Aligned_cols=82 Identities=28% Similarity=0.523 Sum_probs=75.6
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecccc
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (345)
+...++|||+|||.++++++|+++|+.||.|.+|.+..+ +|||||+|.+.++|.+|+..|+|..+.|+.|+|.|+.++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 455789999999999999999999999999999999877 689999999999999999999999999999999999877
Q ss_pred CCCC
Q 019152 133 GQRE 136 (345)
Q Consensus 133 ~~~~ 136 (345)
....
T Consensus 100 ~~~~ 103 (109)
T 1x4g_A 100 PDMT 103 (109)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6543
No 147
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.4e-17 Score=117.19 Aligned_cols=77 Identities=21% Similarity=0.338 Sum_probs=72.5
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccC--CceEEEee
Q 019152 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLF--GKQMKHDA 337 (345)
Q Consensus 260 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~--g~~l~v~~ 337 (345)
++.++|||+|||..+++++|+++|++|| .|..+.+.+++++|||+|.+.++|.+|++.||+. .+. |++|+|.|
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~~~g~~l~V~~ 89 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFG--SIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGF---PLGGPDRRLRVDF 89 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTS--CEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTC---BCSSSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCC---EeCCCCcEEEEEE
Confidence 3458999999999999999999999999 8999999999999999999999999999999999 899 99999999
Q ss_pred cccc
Q 019152 338 MCGT 341 (345)
Q Consensus 338 ~~~~ 341 (345)
++..
T Consensus 90 a~~~ 93 (97)
T 1why_A 90 AKSG 93 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9864
No 148
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.73 E-value=3.5e-17 Score=118.99 Aligned_cols=86 Identities=22% Similarity=0.398 Sum_probs=79.2
Q ss_pred CCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCC---eeEE
Q 019152 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS---RQIR 214 (345)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~---~~i~ 214 (345)
....++|||+|||.++++++|+++|+.||.|..+.++.++ ++.++|||||+|.+.++|.+|+..|++..+.| +.|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3456899999999999999999999999999999999986 78999999999999999999999999999987 9999
Q ss_pred EEeccCCCCC
Q 019152 215 CNWATKGAGN 224 (345)
Q Consensus 215 v~~~~~~~~~ 224 (345)
|.|+......
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9999876543
No 149
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=115.42 Aligned_cols=76 Identities=24% Similarity=0.445 Sum_probs=70.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHh-CCCccCCCceEEeecc
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSL-NGRHLFGQPIKVNWAY 130 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l-~~~~~~g~~l~v~~~~ 130 (345)
+.+.++|||+|||.++++++|+++|+.||.|.++.+.++ +|||||+|.+.++|.+|+..| +|..+.|+.|+|.|+.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~--kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR--QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC--CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 456688999999999999999999999999999999875 579999999999999999988 9999999999999873
No 150
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.73 E-value=1.5e-17 Score=123.71 Aligned_cols=85 Identities=31% Similarity=0.498 Sum_probs=78.7
Q ss_pred CCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 019152 135 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (345)
Q Consensus 135 ~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~ 214 (345)
.....+.++|||+|||.++++++|+++|+.||.|..+++++++.++.++|||||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34455678999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred EEecc
Q 019152 215 CNWAT 219 (345)
Q Consensus 215 v~~~~ 219 (345)
|+|++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99873
No 151
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=3.7e-17 Score=115.75 Aligned_cols=79 Identities=25% Similarity=0.438 Sum_probs=72.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecccc
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (345)
+.+.++|||+|||.++++++|+++|+.||.|.++.+.+ +||||+|.+.++|.+|+..|||..+.|+.|+|.++.++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 82 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK----DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 82 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS----SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCC
Confidence 55678999999999999999999999999999999974 49999999999999999999999999999999999876
Q ss_pred CCC
Q 019152 133 GQR 135 (345)
Q Consensus 133 ~~~ 135 (345)
...
T Consensus 83 ~~~ 85 (92)
T 2dgt_A 83 LRT 85 (92)
T ss_dssp CSC
T ss_pred CCC
Confidence 543
No 152
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.73 E-value=2.6e-17 Score=120.74 Aligned_cols=85 Identities=20% Similarity=0.406 Sum_probs=79.9
Q ss_pred CCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 019152 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (345)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~ 217 (345)
..++++|||+|||..+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|+..|++..+.|+.|.|.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45568999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccCCC
Q 019152 218 ATKGA 222 (345)
Q Consensus 218 ~~~~~ 222 (345)
+..+.
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 87654
No 153
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2e-17 Score=119.59 Aligned_cols=86 Identities=41% Similarity=0.596 Sum_probs=80.4
Q ss_pred CCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 019152 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (345)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~ 217 (345)
..+.++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.|
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44567999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 019152 218 ATKGAG 223 (345)
Q Consensus 218 ~~~~~~ 223 (345)
+..+..
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 977643
No 154
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.9e-17 Score=120.05 Aligned_cols=87 Identities=23% Similarity=0.351 Sum_probs=80.9
Q ss_pred CCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhC------CceeCC
Q 019152 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLT------GKWLGS 210 (345)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~------~~~~~~ 210 (345)
...+.++|||+|||.++++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|+..|+ +..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34556799999999999999999999999999999999998889999999999999999999999999 999999
Q ss_pred eeEEEEeccCCCC
Q 019152 211 RQIRCNWATKGAG 223 (345)
Q Consensus 211 ~~i~v~~~~~~~~ 223 (345)
+.|.|.|+.++..
T Consensus 91 ~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 91 RQLKVDLAVTRDE 103 (111)
T ss_dssp CEEEEECCCCCCC
T ss_pred EEEEEEECCCCcc
Confidence 9999999977644
No 155
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.73 E-value=2.7e-17 Score=116.54 Aligned_cols=82 Identities=21% Similarity=0.284 Sum_probs=74.5
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC--CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecc
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD--KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~--~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (345)
..+.++|||+|||.++++++|+++|+.||.|.++.+..+. .+|||||+|.+.++|.+|+..|+|..+.|+.|+|.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 3456889999999999999999999999999999998754 35899999999999999999999999999999999997
Q ss_pred ccCC
Q 019152 131 ASGQ 134 (345)
Q Consensus 131 ~~~~ 134 (345)
+...
T Consensus 85 ~~~~ 88 (92)
T 2dgv_A 85 NASG 88 (92)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7653
No 156
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.6e-17 Score=118.37 Aligned_cols=85 Identities=21% Similarity=0.421 Sum_probs=79.4
Q ss_pred CCCceeEEECCCCccCCHHHHHHHhccCCCcc-eeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee----
Q 019152 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCS-DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQ---- 212 (345)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~-~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~---- 212 (345)
....++|||+|||.++++++|+++|+.||.|. .+.+++++.++.++|||||+|.+.++|.+|++.|++..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34567999999999999999999999999999 9999999889999999999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 019152 213 IRCNWATKGA 222 (345)
Q Consensus 213 i~v~~~~~~~ 222 (345)
|+|.|+....
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999987653
No 157
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.73 E-value=3.5e-17 Score=120.94 Aligned_cols=83 Identities=33% Similarity=0.515 Sum_probs=78.1
Q ss_pred CCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 019152 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (345)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 218 (345)
...++|||+|||.++++++|+++|+.||.|..+.+..++ +|.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 455799999999999999999999999999999999986 8999999999999999999999999999999999999999
Q ss_pred cCCC
Q 019152 219 TKGA 222 (345)
Q Consensus 219 ~~~~ 222 (345)
....
T Consensus 84 ~~~~ 87 (116)
T 2fy1_A 84 KKPS 87 (116)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7654
No 158
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=3.9e-17 Score=118.27 Aligned_cols=82 Identities=17% Similarity=0.350 Sum_probs=74.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
+.+.++|||+|||.++++++|+++|+.|| |.+|.++.++. +|||||+|.+.++|.+|+ .|+|..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 45678999999999999999999999997 99999998764 579999999999999999 8999999999999999
Q ss_pred ccccCCCC
Q 019152 129 AYASGQRE 136 (345)
Q Consensus 129 ~~~~~~~~ 136 (345)
+.++....
T Consensus 90 a~~~~~~~ 97 (103)
T 2dng_A 90 AEGRKQDK 97 (103)
T ss_dssp CCCCCCCC
T ss_pred ecCCCCCC
Confidence 98766443
No 159
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.6e-17 Score=120.01 Aligned_cols=88 Identities=23% Similarity=0.325 Sum_probs=81.1
Q ss_pred CCCCCceeEEECCCCccCCHHHHHHHhccCCCcc--------eeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce
Q 019152 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCS--------DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 207 (345)
Q Consensus 136 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~ 207 (345)
......++|||+|||.++++++|+++|+.||.|. .+.++.++.++.++|||||+|.+.++|.+|+..|++..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3445668999999999999999999999999999 69999998889999999999999999999999999999
Q ss_pred eCCeeEEEEeccCCCC
Q 019152 208 LGSRQIRCNWATKGAG 223 (345)
Q Consensus 208 ~~~~~i~v~~~~~~~~ 223 (345)
+.|+.|.|.++..+..
T Consensus 90 ~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPP 105 (113)
T ss_dssp ETTEECEEECSSCCCC
T ss_pred cCCCEEEEEECCCCCC
Confidence 9999999999877644
No 160
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=4.2e-17 Score=119.04 Aligned_cols=87 Identities=28% Similarity=0.437 Sum_probs=80.5
Q ss_pred CCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeec-CCCCCcccEEEEEeCCHHHHHHHHHHh-CCceeCCeeEE
Q 019152 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWD-QKTGRSRGFGFVSFRNQQDAQSAINDL-TGKWLGSRQIR 214 (345)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~~~~~g~~fv~f~~~~~a~~a~~~l-~~~~~~~~~i~ 214 (345)
.....++|||+|||..+++++|+++|+.||.|..+.++.+ +.++.++|||||+|.+.++|.+|+..| ++..+.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3455689999999999999999999999999999999988 678999999999999999999999999 99999999999
Q ss_pred EEeccCCCC
Q 019152 215 CNWATKGAG 223 (345)
Q Consensus 215 v~~~~~~~~ 223 (345)
|.|+.....
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999987644
No 161
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=121.89 Aligned_cols=77 Identities=13% Similarity=0.089 Sum_probs=72.9
Q ss_pred cceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeecccc
Q 019152 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCGT 341 (345)
Q Consensus 262 ~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~~ 341 (345)
.++|||+|||.++++++|+++|++|| .|..|.+.+++++|||+|.+.++|.+|+..|||. .++|++|+|.|++..
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~---~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFG--SLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYS---KFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTS--CEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTC---BSSSSBCEEEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCC---EECCeEEEEEECCCC
Confidence 47999999999999999999999999 7999999999999999999999999999999999 999999999999875
Q ss_pred cc
Q 019152 342 LC 343 (345)
Q Consensus 342 ~~ 343 (345)
+.
T Consensus 85 ~~ 86 (111)
T 1whx_A 85 VF 86 (111)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 162
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.73 E-value=1.4e-17 Score=125.36 Aligned_cols=87 Identities=32% Similarity=0.453 Sum_probs=81.1
Q ss_pred CCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 019152 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (345)
Q Consensus 136 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v 215 (345)
....+.++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|+..|++..+.|+.|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34456689999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred EeccCCC
Q 019152 216 NWATKGA 222 (345)
Q Consensus 216 ~~~~~~~ 222 (345)
.|+..+.
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9987754
No 163
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=4.4e-17 Score=117.99 Aligned_cols=87 Identities=26% Similarity=0.527 Sum_probs=79.8
Q ss_pred CCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 019152 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (345)
Q Consensus 136 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v 215 (345)
......++|||+|||.++++++|+++|+.||.|..+.+..+ ++.+++||||+|.+.++|.+|+..|++..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34456689999999999999999999999999999999987 7899999999999999999999999999999999999
Q ss_pred EeccCCCCC
Q 019152 216 NWATKGAGN 224 (345)
Q Consensus 216 ~~~~~~~~~ 224 (345)
.|+..+...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2d9p_A 88 ALAQRKEER 96 (103)
T ss_dssp EECSSCCCC
T ss_pred EEecccccC
Confidence 999876543
No 164
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.73 E-value=1.6e-16 Score=119.09 Aligned_cols=84 Identities=19% Similarity=0.244 Sum_probs=76.8
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC---CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEe
Q 019152 51 FDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (345)
Q Consensus 51 ~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (345)
..+.+.++|||+|||..+++++|+++|+.||.|.+|.+..++ .+|||||+|.+.++|.+|+..|+|..+.|+.|+|.
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 346677899999999999999999999999999999998875 46899999999999999999999999999999999
Q ss_pred eccccCC
Q 019152 128 WAYASGQ 134 (345)
Q Consensus 128 ~~~~~~~ 134 (345)
++.+...
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9976553
No 165
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.72 E-value=1.9e-17 Score=120.63 Aligned_cols=77 Identities=25% Similarity=0.487 Sum_probs=72.1
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecccc
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (345)
..+.++|||+|||.++++++|+++|+.||.|.++.+. +|||||+|.+.++|.+|+..|+|..+.|+.|+|.++.++
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 4556899999999999999999999999999999998 689999999999999999999999999999999999765
Q ss_pred C
Q 019152 133 G 133 (345)
Q Consensus 133 ~ 133 (345)
.
T Consensus 104 ~ 104 (108)
T 2jvo_A 104 A 104 (108)
T ss_dssp C
T ss_pred C
Confidence 4
No 166
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.72 E-value=3e-17 Score=119.61 Aligned_cols=88 Identities=18% Similarity=0.305 Sum_probs=80.9
Q ss_pred CCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee---CCee
Q 019152 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL---GSRQ 212 (345)
Q Consensus 136 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~---~~~~ 212 (345)
....+.++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|++.|++..+ .|+.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3445668999999999999999999999999999999999988899999999999999999999999999887 8999
Q ss_pred EEEEeccCCCC
Q 019152 213 IRCNWATKGAG 223 (345)
Q Consensus 213 i~v~~~~~~~~ 223 (345)
|.|.++.....
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999977543
No 167
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2.6e-17 Score=118.09 Aligned_cols=85 Identities=24% Similarity=0.403 Sum_probs=78.0
Q ss_pred CCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCC---CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 019152 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQK---TGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (345)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v 215 (345)
.+.++|||+|||.++++++|+++|+.||.|..+.+..++. ++.++|||||+|.+.++|.+|+..|++..+.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3457999999999999999999999999999999998866 5589999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 019152 216 NWATKGAG 223 (345)
Q Consensus 216 ~~~~~~~~ 223 (345)
.++.....
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99876543
No 168
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=3.7e-17 Score=122.07 Aligned_cols=80 Identities=21% Similarity=0.325 Sum_probs=71.9
Q ss_pred CCcceEEEeCCCCCCCHHHHH----HHHhccCCceEEEEeec-CCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 54 STCRSVYVGNIHTQVTEPLLQ----EVFSSTGPVEGCKLIRK-DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 54 ~~~~~l~v~~lp~~~t~~~l~----~~f~~~G~v~~v~~~~~-~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
.+.++|||+|||+.+++++|+ ++|+.||.|.+|.+... +.+|||||+|.+.++|..|+..|||..+.|+.|+|.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 346789999999999999876 79999999999988664 4579999999999999999999999999999999999
Q ss_pred ccccC
Q 019152 129 AYASG 133 (345)
Q Consensus 129 ~~~~~ 133 (345)
+..+.
T Consensus 107 a~~~~ 111 (127)
T 2a3j_A 107 SETPQ 111 (127)
T ss_dssp CCCCC
T ss_pred ccCcc
Confidence 97664
No 169
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4.8e-17 Score=116.71 Aligned_cols=84 Identities=20% Similarity=0.299 Sum_probs=78.3
Q ss_pred CCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 019152 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (345)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~ 217 (345)
....++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34567999999999999999999999999999998888888999999999999999999999999999999999999999
Q ss_pred ccCC
Q 019152 218 ATKG 221 (345)
Q Consensus 218 ~~~~ 221 (345)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8653
No 170
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.3e-17 Score=116.92 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=71.3
Q ss_pred CcceEEEcCCCcccCHHHHH----HHhhhcCceeeEEEeeeCC---cceEEEEeCCHHHHHHHHHhhCCCCccccCCceE
Q 019152 261 QYTTVYVGNLAPEVTQLDLH----RHFHSLGAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQM 333 (345)
Q Consensus 261 ~~~~l~V~nlp~~~t~~~L~----~~f~~~G~~~i~~v~i~~~---~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l 333 (345)
..++|||+|||..+++++|+ ++|++|| .|..|.+..+ +++|||+|.+.++|.+|++.|||. .++|++|
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G--~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~---~~~gr~l 82 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHG--KVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRY---KIGSKKI 82 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHS--CEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTE---EETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccC--cEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCC---EECCeEE
Confidence 44799999999999999999 9999999 8999999866 899999999999999999999999 9999999
Q ss_pred EEeecccc
Q 019152 334 KHDAMCGT 341 (345)
Q Consensus 334 ~v~~~~~~ 341 (345)
+|+|++..
T Consensus 83 ~V~~a~~~ 90 (96)
T 2dgx_A 83 LVSLATGA 90 (96)
T ss_dssp EEEECCCS
T ss_pred EEEEcCCC
Confidence 99999865
No 171
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.8e-17 Score=114.69 Aligned_cols=78 Identities=27% Similarity=0.528 Sum_probs=72.1
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecccc
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (345)
+.+.++|||+|||.++|+++|+++|+.||.|.++.+.+ +||||+|.+.++|.+|+..|+|..+.|+.|+|.++.+.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK----DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 45678899999999999999999999999999999974 49999999999999999999999999999999999876
Q ss_pred CC
Q 019152 133 GQ 134 (345)
Q Consensus 133 ~~ 134 (345)
..
T Consensus 82 ~~ 83 (90)
T 2dnp_A 82 QK 83 (90)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 172
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.6e-17 Score=119.89 Aligned_cols=75 Identities=28% Similarity=0.428 Sum_probs=71.6
Q ss_pred CcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeeccc
Q 019152 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCG 340 (345)
Q Consensus 261 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~ 340 (345)
..++|||+|||.++++++|+++|++|| .|.++.+.+++|+|||+|.+.++|.+|+..|||. .++|++|+|+|++.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G--~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~---~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFG--FILDFKHYPEKGCCFIKYDTHEQAAVCIVALANF---PFQGRNLRTGWGKE 100 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTS--CCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTC---EETTEECCCCBCCC
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCC--CEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCC---eECCeEEEEEeccC
Confidence 348999999999999999999999999 7999999999999999999999999999999999 99999999999975
No 173
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.72 E-value=3.1e-18 Score=128.62 Aligned_cols=82 Identities=18% Similarity=0.356 Sum_probs=77.2
Q ss_pred CceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 019152 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (345)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 219 (345)
..++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|+ .|++..+.|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3579999999999999999999999999999999999889999999999999999999999 799999999999999987
Q ss_pred CCC
Q 019152 220 KGA 222 (345)
Q Consensus 220 ~~~ 222 (345)
...
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 174
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=5.4e-17 Score=119.67 Aligned_cols=85 Identities=21% Similarity=0.296 Sum_probs=76.3
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCce--------EEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCcc
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVE--------GCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHL 119 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~--------~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~ 119 (345)
...+.++|||+|||.++++++|+++|+.||.|. .|.++.++. +|||||+|.+.++|.+|+..|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 355678999999999999999999999999998 699988743 68999999999999999999999999
Q ss_pred CCCceEEeeccccCCCC
Q 019152 120 FGQPIKVNWAYASGQRE 136 (345)
Q Consensus 120 ~g~~l~v~~~~~~~~~~ 136 (345)
.|+.|+|.++.++....
T Consensus 91 ~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPMN 107 (113)
T ss_dssp TTEECEEECSSCCCCST
T ss_pred CCCEEEEEECCCCCCCC
Confidence 99999999998776543
No 175
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.72 E-value=3.5e-17 Score=120.05 Aligned_cols=82 Identities=27% Similarity=0.519 Sum_probs=75.0
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
..+.++|||+|||..+++++|+++|+.||.|.+|.+..++. +|||||+|.+.++|.+|+..|+|..+.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45568899999999999999999999999999999987753 58999999999999999999999999999999999
Q ss_pred ccccCC
Q 019152 129 AYASGQ 134 (345)
Q Consensus 129 ~~~~~~ 134 (345)
+.++..
T Consensus 103 a~~~~~ 108 (110)
T 1oo0_B 103 CFVKGP 108 (110)
T ss_dssp SEESSC
T ss_pred cccCCC
Confidence 987653
No 176
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.72 E-value=3.3e-17 Score=115.11 Aligned_cols=82 Identities=20% Similarity=0.369 Sum_probs=76.1
Q ss_pred ceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCC-cccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 019152 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGR-SRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (345)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~-~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 219 (345)
.++|||+|||.++++++|+++|+.||.|..+.+..+..++. ++|||||+|.+.++|.+|+..|++..+.|+.|.|.++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 46899999999999999999999999999999998876655 89999999999999999999999999999999999987
Q ss_pred CCC
Q 019152 220 KGA 222 (345)
Q Consensus 220 ~~~ 222 (345)
+..
T Consensus 84 ~~~ 86 (88)
T 4a8x_A 84 APW 86 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 177
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=8.4e-17 Score=116.50 Aligned_cols=85 Identities=24% Similarity=0.424 Sum_probs=78.6
Q ss_pred CCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 019152 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (345)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~ 216 (345)
...+.++|||+|||.++++++|+++|+.|| |..+.++.++.++.++|||||+|.+.++|.+|+ .|++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345568999999999999999999999997 999999999888999999999999999999999 899999999999999
Q ss_pred eccCCCC
Q 019152 217 WATKGAG 223 (345)
Q Consensus 217 ~~~~~~~ 223 (345)
++.....
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9977543
No 178
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.72 E-value=1e-17 Score=127.24 Aligned_cols=116 Identities=22% Similarity=0.298 Sum_probs=71.5
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcce
Q 019152 185 FGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTT 264 (345)
Q Consensus 185 ~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (345)
+.|++|.+...+..|+..+++....|+.- +.+. ..+....+.++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~-----------------------------------~~~~~~~~~~~ 49 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYG-----------------------------------RPPPDVEGMTS 49 (135)
T ss_dssp ------------------------------CCSC-----------------------------------CSCSSGGGCCC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CCcC-----------------------------------CCCCCCCCCCE
Confidence 56788888888888888887655443310 0000 01112223478
Q ss_pred EEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC------cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeec
Q 019152 265 VYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAM 338 (345)
Q Consensus 265 l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~------~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~ 338 (345)
|||+|||.++++++|+++|++|| .|..|.+..+ +|+|||+|.+.++|.+|+..|||. .++|++|+|.|+
T Consensus 50 l~V~nLp~~~te~~L~~~F~~~G--~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~---~i~g~~l~V~~a 124 (135)
T 2lea_A 50 LKVDNLTYRTSPDTLRRVFEKYG--RVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGA---VLDGRELRVQMA 124 (135)
T ss_dssp EEEECCCSSCHHHHHHHHHGGGS--CCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTC---CSSSSCCEEEEC
T ss_pred EEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCC---EECCEEEEEEEC
Confidence 99999999999999999999999 7888888754 689999999999999999999999 999999999999
Q ss_pred ccc
Q 019152 339 CGT 341 (345)
Q Consensus 339 ~~~ 341 (345)
+..
T Consensus 125 ~~~ 127 (135)
T 2lea_A 125 RYG 127 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 864
No 179
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=120.44 Aligned_cols=78 Identities=27% Similarity=0.394 Sum_probs=69.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC-----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEe
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD-----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~-----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (345)
....++|||+|||.++++++|+++|+.|| |.+|.+..++ .+|||||+|.+.++|.+|+ .|+|..+.|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 55678999999999999999999999999 9999998875 3689999999999999999 899999999999999
Q ss_pred ecccc
Q 019152 128 WAYAS 132 (345)
Q Consensus 128 ~~~~~ 132 (345)
++.++
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 98764
No 180
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.72 E-value=6.9e-17 Score=116.93 Aligned_cols=79 Identities=32% Similarity=0.565 Sum_probs=72.2
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecccc
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (345)
..+.++|||+|||.++|+++|+++|+.||.|.+|.+. ++||||+|.+.++|.+|+..|++..+.|+.|+|.++.++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 3456889999999999999999999999999999987 459999999999999999999999999999999999876
Q ss_pred CCC
Q 019152 133 GQR 135 (345)
Q Consensus 133 ~~~ 135 (345)
...
T Consensus 84 ~~~ 86 (103)
T 2dgu_A 84 DQK 86 (103)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 181
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.72 E-value=3.9e-17 Score=123.62 Aligned_cols=81 Identities=16% Similarity=0.273 Sum_probs=73.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceE--EEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCC----ccCCC
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEG--CKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGR----HLFGQ 122 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~--v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~----~~~g~ 122 (345)
..+.++|||+|||+++|+++|+++|+.||.|.. |+++.++ .+|||||+|.+. +|.+|+..|||. .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 456688999999999999999999999999976 9999876 368999999999 999999999999 99999
Q ss_pred ceEEeeccccCC
Q 019152 123 PIKVNWAYASGQ 134 (345)
Q Consensus 123 ~l~v~~~~~~~~ 134 (345)
.|+|.++.+...
T Consensus 99 ~l~V~~a~~~~~ 110 (131)
T 2m2b_A 99 TINVEFAKGSKR 110 (131)
T ss_dssp CCCCEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999987654
No 182
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1e-16 Score=118.35 Aligned_cols=81 Identities=26% Similarity=0.362 Sum_probs=74.1
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC---CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~---~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
..+.++|||+|||.++++++|+++|+.||.|.+|.+..++. +|||||+|.+.++|.+|+..|++..+.|+.|+|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 44568899999999999999999999999999999998764 479999999999999999999999999999999998
Q ss_pred cccC
Q 019152 130 YASG 133 (345)
Q Consensus 130 ~~~~ 133 (345)
....
T Consensus 92 ~~~~ 95 (114)
T 2do0_A 92 ERAL 95 (114)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 6543
No 183
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.8e-17 Score=116.94 Aligned_cols=81 Identities=26% Similarity=0.518 Sum_probs=74.1
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCce-EEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCc----
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVE-GCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQP---- 123 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~-~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~---- 123 (345)
..++++|||+|||.++++++|+++|+.||.|. ++.++.++. +|||||+|.+.++|.+|+..|||..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 44578999999999999999999999999999 999998763 489999999999999999999999999999
Q ss_pred eEEeeccccC
Q 019152 124 IKVNWAYASG 133 (345)
Q Consensus 124 l~v~~~~~~~ 133 (345)
|+|.|+.+..
T Consensus 86 l~v~~a~~~~ 95 (99)
T 2div_A 86 FKLNYATYSG 95 (99)
T ss_dssp CCEEETTCCS
T ss_pred EEEeecCCCC
Confidence 9999997654
No 184
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.71 E-value=3.9e-17 Score=116.48 Aligned_cols=83 Identities=25% Similarity=0.449 Sum_probs=77.1
Q ss_pred CCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 019152 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (345)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~ 216 (345)
.....++|||+|||..+++++|+++|+.||.|..+.+..++. +.++|||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 345568999999999999999999999999999999999864 8999999999999999999999999999999999999
Q ss_pred eccC
Q 019152 217 WATK 220 (345)
Q Consensus 217 ~~~~ 220 (345)
|++.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9864
No 185
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-16 Score=114.73 Aligned_cols=79 Identities=33% Similarity=0.563 Sum_probs=71.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcc--CCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecc
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSST--GPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~--G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (345)
..+.++|||+|||.++++++|+++|+.| |.|.++.+. +|||||+|.+.++|.+|+..|||..+.|+.|+|.++.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 4567899999999999999999999999 889988764 5799999999999999999999999999999999998
Q ss_pred ccCCC
Q 019152 131 ASGQR 135 (345)
Q Consensus 131 ~~~~~ 135 (345)
++...
T Consensus 88 ~~~~~ 92 (99)
T 2cpd_A 88 PVDKD 92 (99)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 186
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.1e-17 Score=116.33 Aligned_cols=78 Identities=24% Similarity=0.371 Sum_probs=72.1
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC----cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEE
Q 019152 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (345)
Q Consensus 259 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~----~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~ 334 (345)
..+.++|||+|||..+++++|+++|++|| .|..|.+..+ +++|||+|.+.++|.+|+..||+. .++|++|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G--~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~ 86 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFG--KILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGT---VVEGRKIE 86 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTS--CEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTC---EETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCC---EECCEEEE
Confidence 34558999999999999999999999999 7999999866 789999999999999999999999 99999999
Q ss_pred Eeecccc
Q 019152 335 HDAMCGT 341 (345)
Q Consensus 335 v~~~~~~ 341 (345)
|.|++..
T Consensus 87 v~~a~~~ 93 (103)
T 2cq3_A 87 VNNATAR 93 (103)
T ss_dssp EEECCSS
T ss_pred EEEcccC
Confidence 9999764
No 187
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=7.5e-17 Score=116.97 Aligned_cols=85 Identities=26% Similarity=0.463 Sum_probs=78.4
Q ss_pred CCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCC-CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 019152 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKT-GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (345)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v 215 (345)
...+.++|||+|||.++++++|+++|+.|| |..+.++.++.+ +.++|||||+|.+.++|.+|+ .|++..+.|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345568999999999999999999999999 999999999877 899999999999999999999 89999999999999
Q ss_pred EeccCCCC
Q 019152 216 NWATKGAG 223 (345)
Q Consensus 216 ~~~~~~~~ 223 (345)
.++..+..
T Consensus 89 ~~a~~~~~ 96 (104)
T 1wi8_A 89 DVADQAQD 96 (104)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99977644
No 188
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.6e-17 Score=119.71 Aligned_cols=76 Identities=37% Similarity=0.477 Sum_probs=72.4
Q ss_pred CcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeeccc
Q 019152 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCG 340 (345)
Q Consensus 261 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~ 340 (345)
..++|||+|||..+++++|+++|++|| .|..|.+.+++++|||+|.+.++|.+|+..|+|. .++|++|+|.|++.
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G--~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFG--QIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT---TIEGHVVKCYWGKE 98 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHS--CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTC---EETTEECEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCC---EECCcEEEEEecCC
Confidence 348999999999999999999999999 8999999999999999999999999999999999 99999999999986
Q ss_pred c
Q 019152 341 T 341 (345)
Q Consensus 341 ~ 341 (345)
.
T Consensus 99 ~ 99 (109)
T 1x4g_A 99 S 99 (109)
T ss_dssp C
T ss_pred C
Confidence 4
No 189
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=4.7e-17 Score=116.17 Aligned_cols=78 Identities=19% Similarity=0.342 Sum_probs=70.9
Q ss_pred CCCcceEEEeCCCC-CCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccc
Q 019152 53 PSTCRSVYVGNIHT-QVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (345)
Q Consensus 53 ~~~~~~l~v~~lp~-~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (345)
..+.++|||+|||. .+++++|+++|+.||.|.++.+. +|||||+|.+.++|.+|+..|+|..+.|+.|+|.++.+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 44578999999998 99999999999999999999984 68999999999999999999999999999999999976
Q ss_pred cCC
Q 019152 132 SGQ 134 (345)
Q Consensus 132 ~~~ 134 (345)
+..
T Consensus 83 ~~~ 85 (96)
T 2kvi_A 83 NAR 85 (96)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 190
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-16 Score=118.12 Aligned_cols=84 Identities=20% Similarity=0.325 Sum_probs=74.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCc----eEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPV----EGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v----~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
..++++|||+|||.++|+++|+++|+.||.| ..+.+...+.+|||||+|.+.++|.+|+..|+|..+.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3456899999999999999999999999998 566666666789999999999999999999999999999999999
Q ss_pred ccccCCCC
Q 019152 129 AYASGQRE 136 (345)
Q Consensus 129 ~~~~~~~~ 136 (345)
+.++....
T Consensus 102 a~~~~~~~ 109 (115)
T 2cpx_A 102 GKNKKQRS 109 (115)
T ss_dssp CCCCSCCC
T ss_pred ccCCCCCC
Confidence 98776543
No 191
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-16 Score=116.91 Aligned_cols=78 Identities=21% Similarity=0.359 Sum_probs=71.4
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC---cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEE
Q 019152 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD---KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKH 335 (345)
Q Consensus 259 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~---~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v 335 (345)
..+.++|||+|||.++++++|+++|++|| .|..|.+..+ +++|||+|.+.++|.+|++.||+. .++|++|+|
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~V 93 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYG--AIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY---DYDGYRLRV 93 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGS--CEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTC---EETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCC---EECCeEEEE
Confidence 34558999999999999999999999999 7888888764 689999999999999999999999 999999999
Q ss_pred eecccc
Q 019152 336 DAMCGT 341 (345)
Q Consensus 336 ~~~~~~ 341 (345)
.|++..
T Consensus 94 ~~a~~~ 99 (109)
T 1x4a_A 94 EFPRSG 99 (109)
T ss_dssp ECCCCC
T ss_pred EEcccC
Confidence 999864
No 192
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.71 E-value=7.1e-17 Score=117.78 Aligned_cols=82 Identities=27% Similarity=0.370 Sum_probs=77.5
Q ss_pred CCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 019152 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (345)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~ 216 (345)
...+.++|||+|||..+++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 44567899999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred ecc
Q 019152 217 WAT 219 (345)
Q Consensus 217 ~~~ 219 (345)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 975
No 193
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.71 E-value=2.2e-17 Score=119.14 Aligned_cols=76 Identities=26% Similarity=0.493 Sum_probs=71.2
Q ss_pred eeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCC
Q 019152 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (345)
Q Consensus 142 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 221 (345)
++|||+|||.++++++|+++|+.||.|..+.+..+ ++|||||+|.+.++|.+|+..|++..+.|+.|.|.++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999865 6889999999999999999999999999999999999776
Q ss_pred C
Q 019152 222 A 222 (345)
Q Consensus 222 ~ 222 (345)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 194
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.6e-17 Score=120.81 Aligned_cols=82 Identities=17% Similarity=0.258 Sum_probs=74.7
Q ss_pred CCCCcceEEEeCCCCCCCHHHHH---HHHhccCCceEEEEeecCC-------CCeEEEEEeCHHHHHHHHHHhCCCccCC
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQ---EVFSSTGPVEGCKLIRKDK-------SSYGFIHYFDRRSAAMAILSLNGRHLFG 121 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~---~~f~~~G~v~~v~~~~~~~-------~~~afv~f~~~~~A~~a~~~l~~~~~~g 121 (345)
.....++|||+|||+++++++|+ ++|+.||.|.+|.+..++. +|||||+|.+.++|.+|+..|||..+.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34456789999999999999999 9999999999999987653 3799999999999999999999999999
Q ss_pred CceEEeeccccC
Q 019152 122 QPIKVNWAYASG 133 (345)
Q Consensus 122 ~~l~v~~~~~~~ 133 (345)
+.|+|.++.++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998765
No 195
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.8e-17 Score=117.66 Aligned_cols=78 Identities=18% Similarity=0.147 Sum_probs=71.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC---CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
....++|||+|||+++|+++|+++|+.||+|.+|.++.++ .+|||||+|.+.++|.+|+. ++|..+.|+.|.|.++
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 4456899999999999999999999999999999999865 47999999999999999998 8999999999999987
Q ss_pred cc
Q 019152 130 YA 131 (345)
Q Consensus 130 ~~ 131 (345)
.+
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 65
No 196
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.71 E-value=4.1e-17 Score=116.35 Aligned_cols=82 Identities=21% Similarity=0.318 Sum_probs=75.8
Q ss_pred CCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 019152 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (345)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 218 (345)
.+.++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34579999999999999999999999999999999998888999999999999999999999999999999999999987
Q ss_pred cC
Q 019152 219 TK 220 (345)
Q Consensus 219 ~~ 220 (345)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 197
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.5e-17 Score=121.64 Aligned_cols=80 Identities=24% Similarity=0.476 Sum_probs=73.5
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
....++|||+|||.++++++|+++|+.||.|.+|.++.++ .+|||||+|.+.++|.+|+ .|+|..|.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 22 ERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEe
Confidence 4567899999999999999999999999999999998765 3589999999999999999 9999999999999999
Q ss_pred ccccC
Q 019152 129 AYASG 133 (345)
Q Consensus 129 ~~~~~ 133 (345)
+.++.
T Consensus 101 a~~~~ 105 (114)
T 2cq4_A 101 SQAEK 105 (114)
T ss_dssp HHHHH
T ss_pred cCCCc
Confidence 87654
No 198
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.71 E-value=3e-17 Score=127.55 Aligned_cols=79 Identities=24% Similarity=0.258 Sum_probs=71.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccC--CceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEe
Q 019152 54 STCRSVYVGNIHTQVTEPLLQEVFSSTG--PVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (345)
Q Consensus 54 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G--~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (345)
...++|||+|||+++|+++|+++|+.|| .|.+|+++.++. +|||||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 999999998853 4799999999999999999999999999999999
Q ss_pred ecccc
Q 019152 128 WAYAS 132 (345)
Q Consensus 128 ~~~~~ 132 (345)
++.++
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 98654
No 199
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.71 E-value=8.2e-17 Score=123.34 Aligned_cols=88 Identities=26% Similarity=0.446 Sum_probs=81.4
Q ss_pred CCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 019152 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (345)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~ 216 (345)
.....++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34456799999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 019152 217 WATKGAGN 224 (345)
Q Consensus 217 ~~~~~~~~ 224 (345)
++..+...
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 200
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.3e-17 Score=116.29 Aligned_cols=78 Identities=27% Similarity=0.440 Sum_probs=71.9
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC----cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEE
Q 019152 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (345)
Q Consensus 259 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~----~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~ 334 (345)
..+.++|||+|||..+++++|+++|++|| .|..|.+.++ +++|||+|.+.++|.+|+..||+. .+.|++|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~ 86 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIG--PCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGR---KILGKEVK 86 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHS--CEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTE---EETTEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcC--CEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCC---CcCCCeEE
Confidence 34558999999999999999999999999 7999998874 789999999999999999999999 99999999
Q ss_pred Eeecccc
Q 019152 335 HDAMCGT 341 (345)
Q Consensus 335 v~~~~~~ 341 (345)
|.|++..
T Consensus 87 V~~a~~~ 93 (103)
T 2cqi_A 87 VNWATTP 93 (103)
T ss_dssp EEECCCT
T ss_pred EEECCCC
Confidence 9999864
No 201
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.71 E-value=1.8e-17 Score=116.80 Aligned_cols=78 Identities=21% Similarity=0.217 Sum_probs=66.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhccC--CceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecc
Q 019152 57 RSVYVGNIHTQVTEPLLQEVFSSTG--PVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (345)
Q Consensus 57 ~~l~v~~lp~~~t~~~l~~~f~~~G--~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (345)
.+|||+|||.++|+++|+++|+.|| .|.++.++.++. +|||||+|.+.++|.+|+..|||..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 999999998753 5799999999999999999999999999999999998
Q ss_pred ccCC
Q 019152 131 ASGQ 134 (345)
Q Consensus 131 ~~~~ 134 (345)
++..
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7653
No 202
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.71 E-value=2.2e-17 Score=118.72 Aligned_cols=79 Identities=16% Similarity=0.163 Sum_probs=73.2
Q ss_pred CCcceEEEeCCCC------CCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCC-C
Q 019152 54 STCRSVYVGNIHT------QVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFG-Q 122 (345)
Q Consensus 54 ~~~~~l~v~~lp~------~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g-~ 122 (345)
...++|||+|||. ++++++|+++|+.||.|.+|.++.++. +|||||+|.+.++|.+|+..|||..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4468899999999 999999999999999999999998764 5899999999999999999999999999 9
Q ss_pred ceEEeecccc
Q 019152 123 PIKVNWAYAS 132 (345)
Q Consensus 123 ~l~v~~~~~~ 132 (345)
.|+|.++.+.
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999998754
No 203
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.71 E-value=5.1e-17 Score=114.36 Aligned_cols=80 Identities=21% Similarity=0.400 Sum_probs=76.1
Q ss_pred ceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 019152 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (345)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 220 (345)
.++|||+|||.++++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|.+|+ .+++..+.|+.|.|.++..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 468999999999999999999999999999999999888999999999999999999999 8999999999999999876
Q ss_pred C
Q 019152 221 G 221 (345)
Q Consensus 221 ~ 221 (345)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 204
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.6e-17 Score=118.15 Aligned_cols=86 Identities=38% Similarity=0.771 Sum_probs=79.3
Q ss_pred CCCCceeEEECCCCccCCHHHHHHHhcc-CCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCce-eCCeeEE
Q 019152 137 DTSGHFNIFVGDLSPEVTDATLFACFSV-YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW-LGSRQIR 214 (345)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~-~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~-~~~~~i~ 214 (345)
...+.++|||+|||.++++++|+++|+. ||.|..+.++.++ ++.++|||||+|.+.++|.+|++.|++.. +.|+.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 3455679999999999999999999999 9999999999997 89999999999999999999999999999 9999999
Q ss_pred EEeccCCCC
Q 019152 215 CNWATKGAG 223 (345)
Q Consensus 215 v~~~~~~~~ 223 (345)
|.++..+..
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999876543
No 205
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.3e-17 Score=118.00 Aligned_cols=84 Identities=20% Similarity=0.394 Sum_probs=76.1
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEe
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (345)
.+.+.++|||+|||..+++++|+++|+.||.|.+|.++.++. +|||||+|.+.++|.+|+.. ++..|.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 456778999999999999999999999999999999998753 47999999999999999988 9999999999999
Q ss_pred eccccCCCC
Q 019152 128 WAYASGQRE 136 (345)
Q Consensus 128 ~~~~~~~~~ 136 (345)
++.++....
T Consensus 91 ~a~~~~~~~ 99 (105)
T 2dh8_A 91 PCTPRGMQP 99 (105)
T ss_dssp CSCCSSCCT
T ss_pred EccCCCCCC
Confidence 998776543
No 206
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=4.2e-17 Score=117.67 Aligned_cols=82 Identities=24% Similarity=0.357 Sum_probs=71.6
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeec---CCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK---DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~---~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
.+.+.++|||+|||.++++++|+++|+.||.| .++.+ +.+|||||+|.+.++|.+|+..|++..+.|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 35567899999999999999999999999987 34443 3468999999999999999999999999999999999
Q ss_pred ccccCCCC
Q 019152 129 AYASGQRE 136 (345)
Q Consensus 129 ~~~~~~~~ 136 (345)
+.++....
T Consensus 88 a~~~~~~~ 95 (101)
T 2fc9_A 88 QGPRGSPN 95 (101)
T ss_dssp CSSCCCCC
T ss_pred cCCCCCCC
Confidence 98776543
No 207
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=9.3e-17 Score=113.19 Aligned_cols=75 Identities=24% Similarity=0.386 Sum_probs=70.0
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeecc
Q 019152 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMC 339 (345)
Q Consensus 260 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~ 339 (345)
.+.++|||+|||.++++++|+++|++|| .|..+.+. +++|||+|.+.++|.+|++.||+. .++|++|+|.|++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYG--KVLECDII--KNYGFVHIEDKTAAEDAIRNLHHY---KLHGVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSS--CEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTC---BCSSCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC--CEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCC---ccCCcEEEEEECC
Confidence 3458999999999999999999999999 79999988 789999999999999999999999 9999999999997
Q ss_pred cc
Q 019152 340 GT 341 (345)
Q Consensus 340 ~~ 341 (345)
..
T Consensus 79 ~~ 80 (90)
T 2dnq_A 79 NK 80 (90)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 208
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-16 Score=118.54 Aligned_cols=85 Identities=34% Similarity=0.517 Sum_probs=78.8
Q ss_pred CCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 019152 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (345)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~ 216 (345)
...+.++|||+|||.++++++|+++|+.||.|..+++++++.++.++|||||+|.+.++|.+|+..+++ .+.|+.|.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 345568999999999999999999999999999999999988899999999999999999999999998 8999999999
Q ss_pred eccCCC
Q 019152 217 WATKGA 222 (345)
Q Consensus 217 ~~~~~~ 222 (345)
++....
T Consensus 92 ~a~~~~ 97 (116)
T 2cqd_A 92 LAYLGA 97 (116)
T ss_dssp ESTTTC
T ss_pred EcccCC
Confidence 997653
No 209
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.70 E-value=7.9e-17 Score=115.04 Aligned_cols=78 Identities=23% Similarity=0.468 Sum_probs=70.5
Q ss_pred CCCCCcceEEEcCCCc-ccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEE
Q 019152 257 ENNPQYTTVYVGNLAP-EVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKH 335 (345)
Q Consensus 257 ~~~~~~~~l~V~nlp~-~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v 335 (345)
...++.++|||+|||. ++++++|+++|++|| .|..+.+. +|+|||+|.+.++|.+|+..|||. .++|++|+|
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G--~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g~---~~~g~~l~V 89 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYG--HIMQINIK--NAFGFIQFDNPQSVRDAIEXESQE---MNFGKKLIL 89 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGS--CEEEEEEC--SSEEEEEESSHHHHHHHHHHHTTS---EETTEECEE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcC--CEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCC---EECCEEEEE
Confidence 3345668999999998 999999999999999 79999885 789999999999999999999999 999999999
Q ss_pred eecccc
Q 019152 336 DAMCGT 341 (345)
Q Consensus 336 ~~~~~~ 341 (345)
+|++..
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 999864
No 210
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.70 E-value=8.4e-17 Score=112.69 Aligned_cols=80 Identities=29% Similarity=0.472 Sum_probs=74.4
Q ss_pred CCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 019152 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (345)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~ 217 (345)
..+.++|||+|||.++++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|++ +++..+.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 3456799999999999999999999999999999999998889999999999999999999996 588889999999987
Q ss_pred c
Q 019152 218 A 218 (345)
Q Consensus 218 ~ 218 (345)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 211
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=5.6e-17 Score=116.32 Aligned_cols=80 Identities=15% Similarity=0.221 Sum_probs=71.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
....++|||+|||.++++++|+++|+.||.|.++.++.++. +|||||+|.+.++|.+|+..|+|..|.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 44568899999999999999999999999998777776643 58999999999999999999999999999999999
Q ss_pred cccc
Q 019152 129 AYAS 132 (345)
Q Consensus 129 ~~~~ 132 (345)
+..+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8754
No 212
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.5e-17 Score=117.85 Aligned_cols=81 Identities=9% Similarity=0.113 Sum_probs=75.2
Q ss_pred CCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 019152 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (345)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~ 217 (345)
....++|||+|||.++++++|+++|+.||.|..+.+++++. |.++|||||+|.+.++|.+|+. +++..+.|+.|.|.+
T Consensus 8 ~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 8 DVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp CSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 34567999999999999999999999999999999999866 9999999999999999999999 899999999999998
Q ss_pred ccC
Q 019152 218 ATK 220 (345)
Q Consensus 218 ~~~ 220 (345)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 654
No 213
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2.4e-16 Score=116.34 Aligned_cols=85 Identities=26% Similarity=0.338 Sum_probs=78.3
Q ss_pred CCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 019152 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (345)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~ 217 (345)
....++|||+|||.++++++|+++|+.||.|..+.++.++ ++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3456799999999999999999999999999999999985 689999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 019152 218 ATKGAG 223 (345)
Q Consensus 218 ~~~~~~ 223 (345)
+.....
T Consensus 91 a~~~~~ 96 (114)
T 2do0_A 91 DERALP 96 (114)
T ss_dssp CSCCCC
T ss_pred cccCCC
Confidence 876443
No 214
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.4e-16 Score=115.63 Aligned_cols=83 Identities=23% Similarity=0.434 Sum_probs=75.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhc-cCCceEEEEeecCC---CCeEEEEEeCHHHHHHHHHHhCCCc-cCCCceEEe
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSS-TGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRH-LFGQPIKVN 127 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~-~G~v~~v~~~~~~~---~~~afv~f~~~~~A~~a~~~l~~~~-~~g~~l~v~ 127 (345)
+.+.++|||+|||.++|+++|+++|+. ||.|.+|.++.++. +|||||+|.+.++|.+|+..|++.. +.|+.|+|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 455688999999999999999999999 99999999998752 4799999999999999999999999 999999999
Q ss_pred eccccCCC
Q 019152 128 WAYASGQR 135 (345)
Q Consensus 128 ~~~~~~~~ 135 (345)
++.++...
T Consensus 86 ~a~~~~~~ 93 (104)
T 2dhg_A 86 VAIPKASR 93 (104)
T ss_dssp BCCCCCSC
T ss_pred EccCCCcC
Confidence 99776543
No 215
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.70 E-value=5.6e-17 Score=113.60 Aligned_cols=77 Identities=21% Similarity=0.361 Sum_probs=69.7
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEe
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (345)
.+.+.++|||+|||+++++++|+++|+.||.|.++.++.++. +|||||+|.+.++|.+|+. +++..+.|+.|.|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 355678999999999999999999999999999999998764 5799999999999999995 58889999999998
Q ss_pred ec
Q 019152 128 WA 129 (345)
Q Consensus 128 ~~ 129 (345)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 216
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.70 E-value=5.2e-17 Score=126.21 Aligned_cols=81 Identities=20% Similarity=0.302 Sum_probs=76.5
Q ss_pred CceeEEECCCCccCCHHHHHHHhccCC--CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 019152 140 GHFNIFVGDLSPEVTDATLFACFSVYP--SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (345)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~ 217 (345)
..++|||+|||.++++++|+++|+.|| .|..++++.++.+|.++|||||+|.+.++|.+|+..|++..+.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 346999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 019152 218 ATK 220 (345)
Q Consensus 218 ~~~ 220 (345)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 865
No 217
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.70 E-value=1.2e-16 Score=120.23 Aligned_cols=83 Identities=27% Similarity=0.523 Sum_probs=75.5
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
..+.++|||+|||..+|+++|+++|+.||.|.+|.++.++ .+|||||+|.+.++|.+|+..|||..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 4456899999999999999999999999999999998775 268999999999999999999999999999999999
Q ss_pred ccccCCC
Q 019152 129 AYASGQR 135 (345)
Q Consensus 129 ~~~~~~~ 135 (345)
+.++...
T Consensus 99 a~~~~~~ 105 (126)
T 3ex7_B 99 CFVRGPP 105 (126)
T ss_dssp SEESSSC
T ss_pred ecCCCCC
Confidence 9876543
No 218
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.70 E-value=9e-17 Score=120.91 Aligned_cols=88 Identities=22% Similarity=0.418 Sum_probs=81.3
Q ss_pred CCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 019152 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (345)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~ 216 (345)
.....++|||+|||..+++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34556899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 019152 217 WATKGAGN 224 (345)
Q Consensus 217 ~~~~~~~~ 224 (345)
|+......
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99766543
No 219
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.2e-17 Score=117.88 Aligned_cols=83 Identities=29% Similarity=0.553 Sum_probs=78.5
Q ss_pred CceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 019152 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (345)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 219 (345)
+.++|||+|||..+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.++|.+|++.|++..+.|+.|.|.|+.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 35799999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred CCC
Q 019152 220 KGA 222 (345)
Q Consensus 220 ~~~ 222 (345)
...
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 654
No 220
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.3e-17 Score=118.66 Aligned_cols=80 Identities=28% Similarity=0.404 Sum_probs=72.7
Q ss_pred CCCCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC----cceEEEEeCCHHHHHHHHHhhCCCCccccCCce
Q 019152 257 ENNPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 332 (345)
Q Consensus 257 ~~~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~----~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~ 332 (345)
......++|||+|||.++++++|+++|++|| .|..+.+..+ +|+|||+|.+.++|.+|++.|||. .++|++
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~---~~~g~~ 98 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFG--KILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGT---VVEGRK 98 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTC--CCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTC---EETTEE
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcC--CEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCC---EECCEE
Confidence 3344568999999999999999999999999 7889988765 799999999999999999999999 999999
Q ss_pred EEEeecccc
Q 019152 333 MKHDAMCGT 341 (345)
Q Consensus 333 l~v~~~~~~ 341 (345)
|+|+|++..
T Consensus 99 l~V~~a~~~ 107 (109)
T 2err_A 99 IEVNNATAR 107 (109)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999999863
No 221
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=9e-17 Score=119.97 Aligned_cols=78 Identities=18% Similarity=0.205 Sum_probs=69.8
Q ss_pred CCCcceEEEcCCCcccCHHHHH----HHhhhcCceeeEEEeeeC---CcceEEEEeCCHHHHHHHHHhhCCCCccccCCc
Q 019152 259 NPQYTTVYVGNLAPEVTQLDLH----RHFHSLGAGVIEEVRVQR---DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK 331 (345)
Q Consensus 259 ~~~~~~l~V~nlp~~~t~~~L~----~~f~~~G~~~i~~v~i~~---~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~ 331 (345)
.++.++|||+|||+.+++++|+ ++|++|| .|.+|.+.+ .+|+|||+|.+.++|.+|+..|||. .+.|+
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G--~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~---~l~gr 100 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQG--DILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGY---PFQGN 100 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHS--CEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTC---CCTTS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCC--CeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCC---EeCCC
Confidence 3456899999999999999876 6999999 788888864 4899999999999999999999999 99999
Q ss_pred eEEEeecccc
Q 019152 332 QMKHDAMCGT 341 (345)
Q Consensus 332 ~l~v~~~~~~ 341 (345)
+|+|.|++..
T Consensus 101 ~l~V~~a~~~ 110 (127)
T 2a3j_A 101 PLVITFSETP 110 (127)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEEccCc
Confidence 9999999853
No 222
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.70 E-value=3.3e-17 Score=111.35 Aligned_cols=75 Identities=31% Similarity=0.545 Sum_probs=71.6
Q ss_pred eEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 019152 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (345)
Q Consensus 143 ~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 218 (345)
+|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|++ +++..+.|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999998889999999999999999999998 9999999999999875
No 223
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.70 E-value=8.7e-17 Score=117.46 Aligned_cols=85 Identities=31% Similarity=0.393 Sum_probs=75.5
Q ss_pred CCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 019152 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (345)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~ 216 (345)
...+.++|||+|||.++++++|+++|+.||.|..+.+++++.+|.++|||||+|.+.++|.+|+..+ +..+.|+.|.|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 3445679999999999999999999999999999999999888999999999999999999999975 588999999999
Q ss_pred eccCCC
Q 019152 217 WATKGA 222 (345)
Q Consensus 217 ~~~~~~ 222 (345)
++..+.
T Consensus 100 ~a~~~~ 105 (109)
T 2rs2_A 100 VAFPRR 105 (109)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 987654
No 224
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.70 E-value=2.9e-17 Score=118.19 Aligned_cols=83 Identities=28% Similarity=0.483 Sum_probs=74.3
Q ss_pred CCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecC-CCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 019152 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQ-KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (345)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~-~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v 215 (345)
.....++|||+|||.++++++|+++|+.|| |..+.+++++ .+|+++|||||+|.+.++|.+|+ .|++..+.|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345568999999999999999999999999 9999999987 58999999999999999999999 89999999999999
Q ss_pred EeccCC
Q 019152 216 NWATKG 221 (345)
Q Consensus 216 ~~~~~~ 221 (345)
.++..+
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 998764
No 225
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.70 E-value=1.1e-17 Score=151.46 Aligned_cols=86 Identities=20% Similarity=0.438 Sum_probs=80.1
Q ss_pred CCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 019152 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (345)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~ 217 (345)
..+.++|||+|||..+++++|.++|+.||.|..|.|+.++.++.++|||||+|.+.++|.+|+..|++..|.|+.|.|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34457999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 019152 218 ATKGAG 223 (345)
Q Consensus 218 ~~~~~~ 223 (345)
+.....
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 976543
No 226
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.3e-17 Score=117.25 Aligned_cols=76 Identities=18% Similarity=0.232 Sum_probs=70.3
Q ss_pred CcceEEE--cCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCcccc-----CCceE
Q 019152 261 QYTTVYV--GNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYL-----FGKQM 333 (345)
Q Consensus 261 ~~~~l~V--~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~-----~g~~l 333 (345)
+.++||| +||+.++++++|+++|++|| .|..|.+..++|||||+|.+.++|.+|++.|||. .+ .|++|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG--~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~---~~~~~lg~g~~l 98 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCG--LVDALLMPPNKPYSFARYRTTEESKRAYVTLNGK---EVVDDLGQKITL 98 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHS--CEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTC---EEECTTSCEEEC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcC--CeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCC---EEccccCCCcEE
Confidence 4578999 77999999999999999999 8999999999999999999999999999999999 66 68999
Q ss_pred EEeecccc
Q 019152 334 KHDAMCGT 341 (345)
Q Consensus 334 ~v~~~~~~ 341 (345)
.|.|+++.
T Consensus 99 ~v~~a~~~ 106 (114)
T 2cq2_A 99 YLNFVEKV 106 (114)
T ss_dssp EEEEESCC
T ss_pred EEEecccC
Confidence 99999764
No 227
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.70 E-value=8.6e-17 Score=117.35 Aligned_cols=78 Identities=21% Similarity=0.301 Sum_probs=72.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC---CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~---~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
..+.++|||+|||..+++++|+++|+.||.|.+|.++.++. +|||||+|.+.++|.+|+..|+|..+.|+.|+|.++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 45678999999999999999999999999999999998753 579999999999999999999999999999999987
Q ss_pred c
Q 019152 130 Y 130 (345)
Q Consensus 130 ~ 130 (345)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 228
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.70 E-value=7.4e-17 Score=117.84 Aligned_cols=82 Identities=21% Similarity=0.391 Sum_probs=70.5
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEe
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (345)
.+.+.++|||+|||.++++++|+++|+.||.|.+|.++.++ .+|||||+|.+.++|.+|+..+ +..+.|+.|+|.
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~ 99 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPK 99 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEE
Confidence 35567899999999999999999999999999999999875 3689999999999999999876 599999999999
Q ss_pred eccccCC
Q 019152 128 WAYASGQ 134 (345)
Q Consensus 128 ~~~~~~~ 134 (345)
++.++..
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9976643
No 229
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.69 E-value=1.2e-16 Score=113.09 Aligned_cols=83 Identities=27% Similarity=0.351 Sum_probs=76.7
Q ss_pred CCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 019152 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (345)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~ 217 (345)
..+.++|||+|||.++++++|+++|+.||.|..+.+..+ ++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 345679999999999999999999999999999999874 688999999999999999999999999999999999999
Q ss_pred ccCCC
Q 019152 218 ATKGA 222 (345)
Q Consensus 218 ~~~~~ 222 (345)
+....
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 87754
No 230
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.69 E-value=2.7e-16 Score=117.85 Aligned_cols=86 Identities=24% Similarity=0.340 Sum_probs=79.7
Q ss_pred CCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 019152 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (345)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~ 216 (345)
....+++|||+|||..+++++|+++|+.||.|..+.+..++ +|.++|||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34556899999999999999999999999999999999997 89999999999999999999999999999999999999
Q ss_pred eccCCCC
Q 019152 217 WATKGAG 223 (345)
Q Consensus 217 ~~~~~~~ 223 (345)
++.....
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9977543
No 231
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=5.1e-16 Score=114.71 Aligned_cols=79 Identities=16% Similarity=0.264 Sum_probs=70.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCe-EEEEEeCHHHHHHHHHHhCCCccCC--CceEEeec
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSY-GFIHYFDRRSAAMAILSLNGRHLFG--QPIKVNWA 129 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~-afv~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~~ 129 (345)
++....|||+||++.+|+++|+++|+.||.|.+|.+... .|+ |||+|.+.++|..|+..|||..|.| +.|+|.++
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 455566889999999999999999999999999999764 485 9999999999999999999999988 68999999
Q ss_pred cccC
Q 019152 130 YASG 133 (345)
Q Consensus 130 ~~~~ 133 (345)
.++.
T Consensus 100 k~~~ 103 (124)
T 2e5i_A 100 RPTR 103 (124)
T ss_dssp SCSC
T ss_pred cCCc
Confidence 8664
No 232
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.9e-17 Score=115.43 Aligned_cols=78 Identities=19% Similarity=0.283 Sum_probs=71.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
+.+.++|||+|||.++++++|+++|+.||.|.++.+..++. +|||||+|.+.++|.+|+..|||..+.|+.+++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 34568999999999999999999999999999999988753 68999999999999999999999999999999887
Q ss_pred cc
Q 019152 129 AY 130 (345)
Q Consensus 129 ~~ 130 (345)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 233
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6e-17 Score=114.94 Aligned_cols=80 Identities=31% Similarity=0.521 Sum_probs=70.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCC-ceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCC-CccCCCceEEeecc
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNG-RHLFGQPIKVNWAY 130 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~-v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~-~~~~g~~l~v~~~~ 130 (345)
+.+.++|||+|||.++|+++|+++|+.||. |..+.+. ++|||||+|.+.++|.+|+..||| ..+.|+.|+|.++.
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 81 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSV 81 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEcc
Confidence 345688999999999999999999999999 6666653 367999999999999999999999 99999999999998
Q ss_pred ccCCC
Q 019152 131 ASGQR 135 (345)
Q Consensus 131 ~~~~~ 135 (345)
++...
T Consensus 82 ~~~~~ 86 (93)
T 2cqh_A 82 SKKLR 86 (93)
T ss_dssp CCCCC
T ss_pred Ccccc
Confidence 76543
No 234
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.69 E-value=2.7e-16 Score=115.24 Aligned_cols=78 Identities=35% Similarity=0.612 Sum_probs=71.4
Q ss_pred CCCcceEEEeCCCCC-CCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccc
Q 019152 53 PSTCRSVYVGNIHTQ-VTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~-~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (345)
....++|||+|||.+ +++++|+++|+.||.|.+|.+ .+|||||+|.+.++|.+|+..|+|..+.|+.|+|.++.+
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 334589999999999 999999999999999999998 568999999999999999999999999999999999975
Q ss_pred cCC
Q 019152 132 SGQ 134 (345)
Q Consensus 132 ~~~ 134 (345)
+..
T Consensus 100 ~~~ 102 (110)
T 1wf1_A 100 PKP 102 (110)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 235
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2.9e-16 Score=110.91 Aligned_cols=81 Identities=17% Similarity=0.354 Sum_probs=76.0
Q ss_pred CCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 019152 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (345)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 218 (345)
...++|||+|||.++++++|+++|+.| .|..+.++++ .+|.++|||||+|.+.++|.+|+. +++..+.|+.|.|.++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 455799999999999999999999999 9999999998 789999999999999999999999 9999999999999998
Q ss_pred cCCC
Q 019152 219 TKGA 222 (345)
Q Consensus 219 ~~~~ 222 (345)
....
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7653
No 236
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.3e-16 Score=112.00 Aligned_cols=81 Identities=26% Similarity=0.331 Sum_probs=72.4
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccc
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (345)
.+.+.++|||+|| ++|+++|+++|+.||.|.+|.+. +.+|||||+|.+.++|.+|+..|+|..+.|+.|+|.|+.+
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 3556789999996 89999999999999999999884 5678999999999999999999999999999999999987
Q ss_pred cCCCC
Q 019152 132 SGQRE 136 (345)
Q Consensus 132 ~~~~~ 136 (345)
+....
T Consensus 87 ~~~~~ 91 (97)
T 1x5p_A 87 QPMLD 91 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 65443
No 237
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.9e-16 Score=115.57 Aligned_cols=74 Identities=22% Similarity=0.268 Sum_probs=70.2
Q ss_pred CcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCC-----ceEEE
Q 019152 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFG-----KQMKH 335 (345)
Q Consensus 261 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g-----~~l~v 335 (345)
..++|||+|||.++++++|+++|++|| .|..+.+..+ ++|||+|.+.++|.+|++.||+. .+.| +.|+|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~---~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAG--DVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNT---KFRSHEGETAYIRV 87 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGS--CEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSE---EEECTTSCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC--CEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcC---CccCCcCcceEEEE
Confidence 458999999999999999999999999 8999999988 99999999999999999999999 9999 99999
Q ss_pred eeccc
Q 019152 336 DAMCG 340 (345)
Q Consensus 336 ~~~~~ 340 (345)
.|++.
T Consensus 88 ~~a~~ 92 (108)
T 1x4c_A 88 KVDGP 92 (108)
T ss_dssp EESSC
T ss_pred EeCCC
Confidence 99875
No 238
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.69 E-value=1.4e-16 Score=122.26 Aligned_cols=79 Identities=28% Similarity=0.456 Sum_probs=72.1
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEE
Q 019152 51 FDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (345)
Q Consensus 51 ~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (345)
....+.++|||+|||..+++++|+++|+.||.|.++.+..++ .+|||||+|.+.++|.+|+..|+|..+.|+.|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345678899999999999999999999999999999998864 4689999999999999999999999999999999
Q ss_pred eec
Q 019152 127 NWA 129 (345)
Q Consensus 127 ~~~ 129 (345)
.++
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 875
No 239
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.69 E-value=5.7e-17 Score=122.68 Aligned_cols=85 Identities=21% Similarity=0.387 Sum_probs=78.6
Q ss_pred CCCCceeEEECCCCccCCHHHHHHHhccCCCcce--eEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCc----eeCC
Q 019152 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD--ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK----WLGS 210 (345)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~--~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~----~~~~ 210 (345)
.....++|||+|||.++++++|+++|+.||.|.. +++++++.+|.++|||||+|.+. +|.+|+..|++. .+.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3455679999999999999999999999999976 99999988999999999999999 999999999999 9999
Q ss_pred eeEEEEeccCCC
Q 019152 211 RQIRCNWATKGA 222 (345)
Q Consensus 211 ~~i~v~~~~~~~ 222 (345)
+.|.|.++.+..
T Consensus 98 r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 KTINVEFAKGSK 109 (131)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 999999997654
No 240
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-17 Score=115.88 Aligned_cols=81 Identities=23% Similarity=0.443 Sum_probs=75.4
Q ss_pred CCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 019152 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (345)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 218 (345)
.++++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|++.|++..+.|+.+++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45679999999999999999999999999999999999888999999999999999999999999999999999887664
Q ss_pred c
Q 019152 219 T 219 (345)
Q Consensus 219 ~ 219 (345)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 241
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=7.1e-17 Score=117.34 Aligned_cols=86 Identities=30% Similarity=0.397 Sum_probs=79.7
Q ss_pred CCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 019152 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (345)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~ 216 (345)
.....++|||+|||..+++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|+.. ++..+.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 345568999999999999999999999999999999999988999999999999999999999998 9999999999999
Q ss_pred eccCCCC
Q 019152 217 WATKGAG 223 (345)
Q Consensus 217 ~~~~~~~ 223 (345)
++.++..
T Consensus 91 ~a~~~~~ 97 (105)
T 2dh8_A 91 PCTPRGM 97 (105)
T ss_dssp CSCCSSC
T ss_pred EccCCCC
Confidence 9876643
No 242
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-16 Score=116.86 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=70.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecccc
Q 019152 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (345)
Q Consensus 54 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (345)
...++|||+|||+++++++|+++|+.||.|.+|.+.. .+|||||+|.+.++|.+|+..|||..+.|+.|.|.|+...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 3467899999999999999999999999999998864 5579999999999999999999999999999999998654
No 243
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=3.1e-16 Score=107.56 Aligned_cols=74 Identities=19% Similarity=0.346 Sum_probs=65.9
Q ss_pred cce-EEEeCCCCCCCHHH----HHHHHhccC-CceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 56 CRS-VYVGNIHTQVTEPL----LQEVFSSTG-PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 56 ~~~-l~v~~lp~~~t~~~----l~~~f~~~G-~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
+.| |||+|||..+++++ |+++|++|| .|.+| ..|+|||.|.+.++|.+|++.|+|..+.|++|+|.++
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TGCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ecCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEec
Confidence 444 99999999999988 558999995 99888 2389999999999999999999999999999999999
Q ss_pred cccCCC
Q 019152 130 YASGQR 135 (345)
Q Consensus 130 ~~~~~~ 135 (345)
..+...
T Consensus 82 ~~~sd~ 87 (96)
T 2diu_A 82 PKNREL 87 (96)
T ss_dssp CCSCCC
T ss_pred CCCcce
Confidence 877643
No 244
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.69 E-value=1.2e-16 Score=112.47 Aligned_cols=77 Identities=25% Similarity=0.436 Sum_probs=71.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecc
Q 019152 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (345)
Q Consensus 55 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (345)
..++|||+|||.++++++|+++|+.||.|.++.+..++ .+|||||+|.+.++|.+|+ .++|..+.|+.|+|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 35789999999999999999999999999999998875 3689999999999999999 999999999999999987
Q ss_pred cc
Q 019152 131 AS 132 (345)
Q Consensus 131 ~~ 132 (345)
++
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 245
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.69 E-value=1.1e-16 Score=116.64 Aligned_cols=76 Identities=21% Similarity=0.315 Sum_probs=70.8
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeec
Q 019152 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAM 338 (345)
Q Consensus 259 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~ 338 (345)
..+.++|||+|||.++++++|+++|++|| .|..+.+. +|+|||+|.+.++|.+|+..|||. .++|++|+|.|+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G--~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~---~~~g~~l~V~~a 100 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFG--PMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGK---SFANQPLEVVYS 100 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTS--CCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTC---EETTEECEEESC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcC--CEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCC---EECCeEEEEEEe
Confidence 34558999999999999999999999999 78899888 899999999999999999999999 999999999999
Q ss_pred ccc
Q 019152 339 CGT 341 (345)
Q Consensus 339 ~~~ 341 (345)
+..
T Consensus 101 ~~~ 103 (108)
T 2jvo_A 101 KLP 103 (108)
T ss_dssp SCC
T ss_pred cCC
Confidence 864
No 246
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.9e-16 Score=112.98 Aligned_cols=86 Identities=23% Similarity=0.350 Sum_probs=78.3
Q ss_pred CCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 019152 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (345)
Q Consensus 136 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v 215 (345)
....+.++|||+|||..+++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|+. ++..+.|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 344556799999999999999999999999999999999998889999999999999999999998 477899999999
Q ss_pred EeccCCCC
Q 019152 216 NWATKGAG 223 (345)
Q Consensus 216 ~~~~~~~~ 223 (345)
.++..+..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqg_A 88 KLPNSKQS 95 (103)
T ss_dssp ECCCTTCC
T ss_pred EecCCCCc
Confidence 99977644
No 247
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.7e-16 Score=113.08 Aligned_cols=81 Identities=16% Similarity=0.216 Sum_probs=72.6
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
..+.++|||+|||.++++++|+++|+.||.|.+|.++.++. +|||||+|.+.++|.+|+. ++..+.|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 45568899999999999999999999999999999998754 5799999999999999997 47889999999999
Q ss_pred ccccCCC
Q 019152 129 AYASGQR 135 (345)
Q Consensus 129 ~~~~~~~ 135 (345)
+.++...
T Consensus 90 a~~~~~~ 96 (103)
T 2cqg_A 90 PNSKQSQ 96 (103)
T ss_dssp CCTTCCC
T ss_pred cCCCCcC
Confidence 9876543
No 248
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.68 E-value=6.8e-17 Score=115.69 Aligned_cols=81 Identities=19% Similarity=0.421 Sum_probs=72.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHH----HHHhccCCceEEEEeec-CCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEe
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQ----EVFSSTGPVEGCKLIRK-DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~----~~f~~~G~v~~v~~~~~-~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (345)
..++++|||+|||.++++++|+ ++|+.||.|.+|.+... ..+|||||+|.+.++|.+|+..|+|..+.|+.|+|.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4456899999999999999999 99999999999988743 346899999999999999999999999999999999
Q ss_pred eccccC
Q 019152 128 WAYASG 133 (345)
Q Consensus 128 ~~~~~~ 133 (345)
++.++.
T Consensus 85 ~a~~~~ 90 (97)
T 1nu4_A 85 YAKTDS 90 (97)
T ss_dssp ECSSCC
T ss_pred EccCCC
Confidence 997654
No 249
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8.5e-17 Score=116.75 Aligned_cols=80 Identities=38% Similarity=0.642 Sum_probs=73.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 54 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
.+.++|||+|||..+++++|+++|+.||.|.++.+..++. +|||||+|.+.++|.+|+..|+|..+.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 3568899999999999999999999999999999998753 589999999999999999999999999999999999
Q ss_pred cccC
Q 019152 130 YASG 133 (345)
Q Consensus 130 ~~~~ 133 (345)
.+..
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 7654
No 250
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.68 E-value=2.4e-16 Score=116.84 Aligned_cols=80 Identities=25% Similarity=0.432 Sum_probs=72.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCe-EEEEEeCHHHHHHHHHHhCCCccCC--CceEEeec
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSY-GFIHYFDRRSAAMAILSLNGRHLFG--QPIKVNWA 129 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~-afv~f~~~~~A~~a~~~l~~~~~~g--~~l~v~~~ 129 (345)
++....|||+||++.+|+++|+++|+.||.|.+|.+..+. +|+ |||+|.+.++|.+|+..|||..|.| +.|+|.|+
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 5566788999999999999999999999999999888754 466 9999999999999999999999998 89999999
Q ss_pred cccC
Q 019152 130 YASG 133 (345)
Q Consensus 130 ~~~~ 133 (345)
++..
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 8764
No 251
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.68 E-value=2.2e-16 Score=115.73 Aligned_cols=96 Identities=22% Similarity=0.406 Sum_probs=83.5
Q ss_pred cCCCceEEeeccccCCCCCCCCceeEEECCCCcc-CCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHH
Q 019152 119 LFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPE-VTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ 197 (345)
Q Consensus 119 ~~g~~l~v~~~~~~~~~~~~~~~~~l~v~~lp~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 197 (345)
..|..+.+..+............++|||+|||.. +++++|+++|+.||.|..+.+ +++||||+|.+.++|.
T Consensus 5 ~~g~~~~~~~s~~~~~~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~ 76 (110)
T 1wf1_A 5 SSGMSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHAR 76 (110)
T ss_dssp CCSCCCCCCCCCSCCSCCCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHH
T ss_pred CCCcccccccCCCCCCCCCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHH
Confidence 3467777777766555555566689999999999 999999999999999999987 4689999999999999
Q ss_pred HHHHHhCCceeCCeeEEEEeccCCC
Q 019152 198 SAINDLTGKWLGSRQIRCNWATKGA 222 (345)
Q Consensus 198 ~a~~~l~~~~~~~~~i~v~~~~~~~ 222 (345)
+|+..|++..+.|+.|.|.|+....
T Consensus 77 ~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 77 AAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp HHHHHHTTCEETTEECCEEESCCCC
T ss_pred HHHHHcCCCEECCeEEEEEECCCCC
Confidence 9999999999999999999987544
No 252
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=5.2e-17 Score=110.98 Aligned_cols=76 Identities=33% Similarity=0.475 Sum_probs=72.5
Q ss_pred eeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 019152 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (345)
Q Consensus 142 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 218 (345)
++|||+|||.++++++|+++|+.||.|..+.+..++.+|.++|||||+|.+.++|.+|++.++ ..+.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 379999999999999999999999999999999998889999999999999999999999988 9999999999986
No 253
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.68 E-value=5.5e-17 Score=115.70 Aligned_cols=78 Identities=15% Similarity=0.224 Sum_probs=69.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
+.++++|||+|||+++++++|+++|+.||.|.++.++.++. +|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 33458899999999999999999999999998888877643 48999999999999999999999999999999998
Q ss_pred cc
Q 019152 129 AY 130 (345)
Q Consensus 129 ~~ 130 (345)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 254
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=111.85 Aligned_cols=75 Identities=27% Similarity=0.405 Sum_probs=69.7
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeecc
Q 019152 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMC 339 (345)
Q Consensus 260 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~ 339 (345)
.+.++|||+|||.++++++|+++|++|| .|..+.+.++ +|||+|.+.++|.+|+..||+. .+.|+.|+|+|++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G--~v~~v~~~~~--~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYG--PVIECDIVKD--YAFVHMERAEDAVEAIRGLDNT---EFQGKRMHVQLST 80 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTS--CCCEEEECSS--EEEEEESCHHHHHHHHHHHTTE---EETTEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEECC--EEEEEECCHHHHHHHHHHhCCC---eeCCcEEEEEEcc
Confidence 3458999999999999999999999999 7999999854 9999999999999999999999 9999999999997
Q ss_pred cc
Q 019152 340 GT 341 (345)
Q Consensus 340 ~~ 341 (345)
..
T Consensus 81 ~~ 82 (92)
T 2dgt_A 81 SR 82 (92)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 255
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.2e-16 Score=111.24 Aligned_cols=75 Identities=25% Similarity=0.358 Sum_probs=69.6
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeecc
Q 019152 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMC 339 (345)
Q Consensus 260 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~ 339 (345)
.+.++|||+|||.++++++|+++|++|| .|..+.+.++ +|||+|.+.++|.+|+..|||. .++|++|+|+|++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G--~v~~~~~~~~--~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRG--RVIECDVVKD--YAFVHMEKEADAKAAIAQLNGK---EVKGKRINVELST 79 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHS--CEEEEEECSS--CEEEEESCHHHHHHHHHHHTTC---EETTEECEEEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCC--CEEEEEEECC--EEEEEECCHHHHHHHHHHhCCC---EECCcEEEEEECC
Confidence 3458899999999999999999999999 7999999854 9999999999999999999999 9999999999997
Q ss_pred cc
Q 019152 340 GT 341 (345)
Q Consensus 340 ~~ 341 (345)
..
T Consensus 80 ~~ 81 (90)
T 2dnp_A 80 KG 81 (90)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 256
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.68 E-value=2.8e-16 Score=122.74 Aligned_cols=86 Identities=24% Similarity=0.398 Sum_probs=80.5
Q ss_pred CCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 019152 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (345)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~ 217 (345)
..+.++|||+|||..+++++|+++|+.||.|..+.++.++.++.+++||||+|.+.++|.+|+..|++..+.|+.|.|.|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 019152 218 ATKGAG 223 (345)
Q Consensus 218 ~~~~~~ 223 (345)
+.....
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 987544
No 257
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.68 E-value=1.3e-16 Score=125.87 Aligned_cols=133 Identities=20% Similarity=0.299 Sum_probs=71.5
Q ss_pred EEeCCHHHHHHHHHHhCCceeC--CeeEEEEeccCCCCCCCCccCccccchhhccCCCCcCCcCCCCCCCCCCCCCcceE
Q 019152 188 VSFRNQQDAQSAINDLTGKWLG--SRQIRCNWATKGAGNNEDKQSSDAKSVVELTNGSSEDGKETTNTEAPENNPQYTTV 265 (345)
Q Consensus 188 v~f~~~~~a~~a~~~l~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 265 (345)
.+|.+.++|..++..+++.... |+.....++...... ...... ..........+....+.++|
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~----------~~~~~~-----~s~~~~~~~~~~~~~~~~~l 75 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIH----------SYERVR-----NEDDDELEPGPQRSVEGWIL 75 (165)
T ss_dssp ----------------------------------------------------------------------CCCCC-CEEE
T ss_pred hhhhccccccccchhhccccccccCCCCCCCcccccccc----------Cccccc-----cCCCCCCCCCCCCCCCCCEE
Confidence 6788999999999988876553 555554442211000 000000 00000011122334456899
Q ss_pred EEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC------cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeecc
Q 019152 266 YVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD------KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMC 339 (345)
Q Consensus 266 ~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~------~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~ 339 (345)
||+|||..+++++|+++|++|| .|..|.+..+ +|+|||+|.+.++|.+|+..|||. .|+|++|.|.|++
T Consensus 76 ~V~nLp~~~t~~~L~~~F~~~G--~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~---~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 76 FVTSIHEEAQEDEIQEKFCDYG--EIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGA---EIMGQTIQVDWCF 150 (165)
T ss_dssp EEESCCTTCCHHHHHHHHGGGS--CEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTC---EETTEECEEEESE
T ss_pred EEeCCCCCCCHHHHHHHhhcCC--CEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCC---EECCEEEEEEEec
Confidence 9999999999999999999999 7999988765 699999999999999999999999 9999999999986
Q ss_pred c
Q 019152 340 G 340 (345)
Q Consensus 340 ~ 340 (345)
.
T Consensus 151 ~ 151 (165)
T 1rk8_A 151 V 151 (165)
T ss_dssp E
T ss_pred C
Confidence 4
No 258
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.8e-16 Score=116.10 Aligned_cols=85 Identities=22% Similarity=0.357 Sum_probs=77.8
Q ss_pred CCceeEEECCCCccCCHHHHHHHhccCCC-cceeEee-ecCCCCCcccEEEEEeCCHHHHHHHHHHhC--CceeCCeeEE
Q 019152 139 SGHFNIFVGDLSPEVTDATLFACFSVYPS-CSDARVM-WDQKTGRSRGFGFVSFRNQQDAQSAINDLT--GKWLGSRQIR 214 (345)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~-v~~~~~~-~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~--~~~~~~~~i~ 214 (345)
.+.++|||+|||.++++++|+++|+.||. |..+.++ .++.+|.++|||||+|.+.++|.+|+..|+ +..+.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45689999999999999999999999998 9999988 777788999999999999999999999996 5899999999
Q ss_pred EEeccCCCC
Q 019152 215 CNWATKGAG 223 (345)
Q Consensus 215 v~~~~~~~~ 223 (345)
|.|+.+...
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987654
No 259
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=9.1e-17 Score=118.46 Aligned_cols=81 Identities=10% Similarity=0.055 Sum_probs=73.0
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCc-eEEEEeecC---CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEe
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPV-EGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v-~~v~~~~~~---~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (345)
.+.+.++|||+|||+++|+++|+++|+.||.| .+|.++.++ .+|||||+|.+.++|.+|+.. ++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 35667899999999999999999999999999 889998865 468999999999999999976 9999999999999
Q ss_pred eccccC
Q 019152 128 WAYASG 133 (345)
Q Consensus 128 ~~~~~~ 133 (345)
++.++.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 986543
No 260
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.7e-16 Score=113.12 Aligned_cols=80 Identities=11% Similarity=0.070 Sum_probs=71.1
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceE-EEEeecC---CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEG-CKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~-v~~~~~~---~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
....++|||+|||+++|+++|+++|+.||.|.+ |.++.+. .+|||||+|.+.++|.+|+.. ++..+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 456789999999999999999999999999987 8777653 368999999999999999987 99999999999998
Q ss_pred ccccC
Q 019152 129 AYASG 133 (345)
Q Consensus 129 ~~~~~ 133 (345)
+....
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 86554
No 261
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.5e-16 Score=112.33 Aligned_cols=78 Identities=21% Similarity=0.341 Sum_probs=69.7
Q ss_pred CCCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeec
Q 019152 259 NPQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAM 338 (345)
Q Consensus 259 ~~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~ 338 (345)
..+.++|||+|||..+++++|+++|++||...|..+.+. +++|||+|.+.++|.+|+..|||. .++|++|+|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~v~~a 86 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKALNGK---VLDGSPIEVTLA 86 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHHHSSE---EETTEEEEEECC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCCC---EeCCcEEEEEEC
Confidence 345589999999999999999999999922278888876 679999999999999999999999 999999999999
Q ss_pred ccc
Q 019152 339 CGT 341 (345)
Q Consensus 339 ~~~ 341 (345)
+..
T Consensus 87 ~~~ 89 (99)
T 2cpd_A 87 KPV 89 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 864
No 262
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.68 E-value=2.2e-16 Score=114.27 Aligned_cols=75 Identities=24% Similarity=0.340 Sum_probs=69.4
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeecc
Q 019152 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMC 339 (345)
Q Consensus 260 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~ 339 (345)
.+.++|||+|||.++++++|+++|++|| .|..+.+. +++|||+|.+.++|.+|++.||+. .+.|++|+|.|++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G--~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFG--KLERVKKL--KDYAFIHFDERDGAVKAMEEMNGK---DLEGENIEIVFAK 81 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHS--CEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTE---EETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC--CEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCC---ccCCCEEEEEEcC
Confidence 3458999999999999999999999999 79999988 569999999999999999999999 9999999999997
Q ss_pred cc
Q 019152 340 GT 341 (345)
Q Consensus 340 ~~ 341 (345)
..
T Consensus 82 ~~ 83 (103)
T 2dgu_A 82 PP 83 (103)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 263
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.8e-16 Score=113.89 Aligned_cols=80 Identities=18% Similarity=0.343 Sum_probs=71.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC---CCeEEEEEeCHHHHHHHHHHhCCCcc--------CC
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHL--------FG 121 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~---~~~afv~f~~~~~A~~a~~~l~~~~~--------~g 121 (345)
..+.++|||+|||.++++++|+++|+.||.|.++.++.++. +|||||+|.+.++|.+|+..|||..+ .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 45668899999999999999999999999999999998753 47999999999999999999999999 57
Q ss_pred CceEEeecccc
Q 019152 122 QPIKVNWAYAS 132 (345)
Q Consensus 122 ~~l~v~~~~~~ 132 (345)
++|.|.|+.++
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 77899888754
No 264
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=116.14 Aligned_cols=80 Identities=19% Similarity=0.221 Sum_probs=71.6
Q ss_pred CCCcceEEEeCCCCCC------CHHHHHHHHhccCCceEEEEeec--CCCCeEEEEEeCHHHHHHHHHHhCCCccCCC-c
Q 019152 53 PSTCRSVYVGNIHTQV------TEPLLQEVFSSTGPVEGCKLIRK--DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQ-P 123 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~------t~~~l~~~f~~~G~v~~v~~~~~--~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~-~ 123 (345)
....++|||+|||..+ |+++|+++|+.||.|.+|.+.+. +++|||||+|.+.++|.+|+..|||..+.|+ .
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 4456889999999999 78999999999999999998843 3468999999999999999999999999998 9
Q ss_pred eEEeecccc
Q 019152 124 IKVNWAYAS 132 (345)
Q Consensus 124 l~v~~~~~~ 132 (345)
|+|.++.+.
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999998654
No 265
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=4.8e-16 Score=111.14 Aligned_cols=78 Identities=24% Similarity=0.278 Sum_probs=67.8
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeecc
Q 019152 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMC 339 (345)
Q Consensus 260 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~ 339 (345)
...++|||+|||..+++++|+++|+.||.+. ..+...+.+|+|||+|.+.++|.+|+..|||. .++|++|+|+|++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~---~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGL---RLGTDTLRVALAR 92 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTC---CSSSSCCEEEECC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCC---EECCcEEEEEEcC
Confidence 3458999999999999999999999999432 23334466899999999999999999999999 9999999999997
Q ss_pred cc
Q 019152 340 GT 341 (345)
Q Consensus 340 ~~ 341 (345)
..
T Consensus 93 ~~ 94 (97)
T 2e5j_A 93 QQ 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 266
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.9e-16 Score=110.87 Aligned_cols=79 Identities=19% Similarity=0.272 Sum_probs=72.2
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC---CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~---~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
+...++|||+|||+++++++|+++|+.| .|.+|.++.+.. +|||||+|.+.++|.+|+. ++|..+.|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 4567899999999999999999999999 899999998743 5799999999999999999 9999999999999999
Q ss_pred cccC
Q 019152 130 YASG 133 (345)
Q Consensus 130 ~~~~ 133 (345)
.++.
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 7654
No 267
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.1e-16 Score=117.00 Aligned_cols=83 Identities=17% Similarity=0.381 Sum_probs=74.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
+.+.++|||+|||.++++++|+++|+.||.|.+|.++.++. +|||||+|.+.++|.+|+.. ++..|.|+.|+|.+
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEE
Confidence 44568999999999999999999999999999999998753 68999999999999999987 99999999999999
Q ss_pred ccccCCCC
Q 019152 129 AYASGQRE 136 (345)
Q Consensus 129 ~~~~~~~~ 136 (345)
+.++....
T Consensus 103 a~~~~~~~ 110 (116)
T 1x4b_A 103 AVAREESG 110 (116)
T ss_dssp CSSCCCCC
T ss_pred CCCCccCC
Confidence 98776543
No 268
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.8e-16 Score=113.12 Aligned_cols=80 Identities=13% Similarity=0.172 Sum_probs=71.3
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC---CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~---~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
.+...++|||+|||+++|+++|+++|+.||.+ +|.++.+++ +|||||+|.+.++|.+|+ .+|+..+.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEE
Confidence 35667899999999999999999999999965 999988763 579999999999999999 5799999999999998
Q ss_pred ccccC
Q 019152 129 AYASG 133 (345)
Q Consensus 129 ~~~~~ 133 (345)
+....
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87654
No 269
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.67 E-value=2.5e-17 Score=116.19 Aligned_cols=80 Identities=28% Similarity=0.464 Sum_probs=73.7
Q ss_pred eeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCC
Q 019152 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 221 (345)
Q Consensus 142 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~ 221 (345)
++|||+|||.++++++|+++|+.||.|..+.+.+++.+|.++|||||+|.+.+ |.+|+..|++..+.|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999888999999999999999 99999999999999999999998765
Q ss_pred C
Q 019152 222 A 222 (345)
Q Consensus 222 ~ 222 (345)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 270
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.2e-16 Score=115.75 Aligned_cols=84 Identities=15% Similarity=0.223 Sum_probs=76.3
Q ss_pred CCceeEEECCCCccCCHHHHH---HHhccCCCcceeEeeecCCCC---CcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 019152 139 SGHFNIFVGDLSPEVTDATLF---ACFSVYPSCSDARVMWDQKTG---RSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQ 212 (345)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~---~~f~~~g~v~~~~~~~~~~~~---~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~ 212 (345)
...++|||+|||.++++++|+ ++|+.||.|..+.+..++.++ .++|||||+|.+.++|.+|++.|++..+.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 345799999999999999999 999999999999999886543 56699999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 019152 213 IRCNWATKGA 222 (345)
Q Consensus 213 i~v~~~~~~~ 222 (345)
|.|.|+.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998764
No 271
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.67 E-value=2e-16 Score=113.26 Aligned_cols=77 Identities=21% Similarity=0.322 Sum_probs=70.8
Q ss_pred CCcceEEEcCCCcccCHHHHH----HHhhhcCceeeEEEeee---CCcceEEEEeCCHHHHHHHHHhhCCCCccccCCce
Q 019152 260 PQYTTVYVGNLAPEVTQLDLH----RHFHSLGAGVIEEVRVQ---RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ 332 (345)
Q Consensus 260 ~~~~~l~V~nlp~~~t~~~L~----~~f~~~G~~~i~~v~i~---~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~ 332 (345)
+++++|||+|||.++++++|+ ++|++|| .|..|.+. +.+|+|||+|.+.++|.+|+..|||. .++|++
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G--~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~ 80 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFG--QILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGF---PFYDKP 80 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGS--CEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTC---EETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCC--CEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCC---EECCcE
Confidence 355899999999999999999 9999999 78899887 35899999999999999999999999 999999
Q ss_pred EEEeecccc
Q 019152 333 MKHDAMCGT 341 (345)
Q Consensus 333 l~v~~~~~~ 341 (345)
|+|+|++..
T Consensus 81 l~v~~a~~~ 89 (97)
T 1nu4_A 81 MRIQYAKTD 89 (97)
T ss_dssp CEEEECSSC
T ss_pred EEEEEccCC
Confidence 999999863
No 272
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.67 E-value=1.5e-16 Score=115.71 Aligned_cols=76 Identities=13% Similarity=0.047 Sum_probs=68.0
Q ss_pred cceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeee--CCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeecc
Q 019152 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQ--RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMC 339 (345)
Q Consensus 262 ~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~--~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~ 339 (345)
.++|||+|||+++++++|+++|++||. .|..+.+. +++|+|||+|.+.++|.+|++.|||. .++|++|+|.+++
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~-~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~---~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSL-ETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNI---EFRGSVITVERDD 103 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTC-CCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTE---EETTEEEEEEESC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCC-eeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCC---EECCeEEEEEECC
Confidence 378999999999999999999999992 46667664 46899999999999999999999999 9999999999987
Q ss_pred cc
Q 019152 340 GT 341 (345)
Q Consensus 340 ~~ 341 (345)
..
T Consensus 104 ~~ 105 (111)
T 2jvr_A 104 NP 105 (111)
T ss_dssp C-
T ss_pred CC
Confidence 53
No 273
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.67 E-value=9.4e-17 Score=110.73 Aligned_cols=71 Identities=21% Similarity=0.305 Sum_probs=64.6
Q ss_pred ceEEEeCCCCCC------CHHHHHHHHhccCCceEEEEeec--CCCCeEEEEEeCHHHHHHHHHHhCCCccCCC-ceEEe
Q 019152 57 RSVYVGNIHTQV------TEPLLQEVFSSTGPVEGCKLIRK--DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQ-PIKVN 127 (345)
Q Consensus 57 ~~l~v~~lp~~~------t~~~l~~~f~~~G~v~~v~~~~~--~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~-~l~v~ 127 (345)
++|||+|||..+ ++++|+++|+.||.|.++.+.++ +++|||||+|.+.++|.+|+..|||..+.|+ .|+|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V~ 81 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVN 81 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEeC
Confidence 689999999999 77999999999999999998743 3469999999999999999999999999999 88773
No 274
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3e-16 Score=114.84 Aligned_cols=81 Identities=23% Similarity=0.348 Sum_probs=72.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCC-ceEEEEe-ec----CCCCeEEEEEeCHHHHHHHHHHhC--CCccCCCceE
Q 019152 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGP-VEGCKLI-RK----DKSSYGFIHYFDRRSAAMAILSLN--GRHLFGQPIK 125 (345)
Q Consensus 54 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~-v~~v~~~-~~----~~~~~afv~f~~~~~A~~a~~~l~--~~~~~g~~l~ 125 (345)
.+.++|||+|||.++++++|+++|+.||. |.++.++ .+ +.+|||||+|.+.++|.+|+..|+ +..+.|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35688999999999999999999999998 9999987 44 346899999999999999999996 5899999999
Q ss_pred EeeccccCC
Q 019152 126 VNWAYASGQ 134 (345)
Q Consensus 126 v~~~~~~~~ 134 (345)
|.|+.++..
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987654
No 275
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.5e-16 Score=115.79 Aligned_cols=83 Identities=28% Similarity=0.443 Sum_probs=77.9
Q ss_pred CceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 019152 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (345)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 219 (345)
..++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|+.. ++..+.|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 347999999999999999999999999999999999988899999999999999999999997 9999999999999998
Q ss_pred CCCC
Q 019152 220 KGAG 223 (345)
Q Consensus 220 ~~~~ 223 (345)
++..
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 7654
No 276
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.5e-16 Score=114.11 Aligned_cols=77 Identities=21% Similarity=0.328 Sum_probs=68.3
Q ss_pred CCcceEEE--eCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCcc-----CCCceEE
Q 019152 54 STCRSVYV--GNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHL-----FGQPIKV 126 (345)
Q Consensus 54 ~~~~~l~v--~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~-----~g~~l~v 126 (345)
.++++||| +||+.++++++|+++|++||.|.+|.+.. .+|||||+|.+.++|.+|+..|||..+ .|+.|.|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v 100 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 100 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence 34678999 77999999999999999999999998865 368999999999999999999999988 6788999
Q ss_pred eecccc
Q 019152 127 NWAYAS 132 (345)
Q Consensus 127 ~~~~~~ 132 (345)
.++...
T Consensus 101 ~~a~~~ 106 (114)
T 2cq2_A 101 NFVEKV 106 (114)
T ss_dssp EEESCC
T ss_pred EecccC
Confidence 888643
No 277
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.67 E-value=3e-16 Score=120.43 Aligned_cols=82 Identities=34% Similarity=0.527 Sum_probs=76.8
Q ss_pred CCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 019152 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (345)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~ 216 (345)
...+.++|||+|||..+++++|+++|+.||.|..+.+++++.++.++|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34566899999999999999999999999999999999998889999999999999999999999999999999999998
Q ss_pred ec
Q 019152 217 WA 218 (345)
Q Consensus 217 ~~ 218 (345)
|+
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 278
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.67 E-value=1.2e-16 Score=108.44 Aligned_cols=71 Identities=14% Similarity=0.291 Sum_probs=66.0
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 58 ~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
+|||+|||.++++++|+++|+.||.|.++.+..++ ++|||||+|.+.++|.+|+. ++|..+.|+.|+|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999998765 36899999999999999996 9999999999999875
No 279
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.67 E-value=1.4e-16 Score=118.02 Aligned_cols=79 Identities=14% Similarity=0.088 Sum_probs=71.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCC---ceEEEEeecCC---CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEE
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGP---VEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~---v~~v~~~~~~~---~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (345)
+...++|||+|||+++|+++|+++|+.||. |.+|.++.++. +|||||+|.+.++|.+|+. +++..|.|+.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 456788999999999999999999999998 89999988754 5899999999999999998 9999999999999
Q ss_pred eecccc
Q 019152 127 NWAYAS 132 (345)
Q Consensus 127 ~~~~~~ 132 (345)
.++...
T Consensus 93 ~~a~~~ 98 (118)
T 2db1_A 93 FKSHRT 98 (118)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 988543
No 280
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=113.13 Aligned_cols=75 Identities=29% Similarity=0.413 Sum_probs=67.0
Q ss_pred CcceEEEcCCCcccCHHHHHHHhhhcCcee-eEEEeeeCCcceEEEEeCCHHHHHHHHHhhCC-CCccccCCceEEEeec
Q 019152 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGV-IEEVRVQRDKGFGFVRYSTHAEAALAIQMGNT-TQSSYLFGKQMKHDAM 338 (345)
Q Consensus 261 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~-i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~-~~~~~~~g~~l~v~~~ 338 (345)
+.++|||+|||.++++++|+++|++|| . +..+.+ ..+++|||+|.+.++|.+|++.||| . .++|++|+|.|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G--~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~---~~~g~~l~v~~a 80 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRK--LPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKV---ELHGKIMEVDYS 80 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTT--CCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTC---EETTEECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcC--CceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCe---eECCEEEEEEEc
Confidence 447899999999999999999999999 5 444444 5689999999999999999999999 8 899999999999
Q ss_pred ccc
Q 019152 339 CGT 341 (345)
Q Consensus 339 ~~~ 341 (345)
+..
T Consensus 81 ~~~ 83 (93)
T 2cqh_A 81 VSK 83 (93)
T ss_dssp CCC
T ss_pred cCc
Confidence 764
No 281
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.8e-16 Score=115.81 Aligned_cols=82 Identities=20% Similarity=0.268 Sum_probs=76.1
Q ss_pred CCCceeEEECCCCccCCHHHHHHHhccCCCc-ceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 019152 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSC-SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (345)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v-~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~ 216 (345)
..+.++|||+|||.++++++|+++|+.||.| ..+.++.++ +|.++|||||+|.+.++|.+|+.. ++..+.|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 4456799999999999999999999999999 899999996 899999999999999999999986 9999999999999
Q ss_pred eccCC
Q 019152 217 WATKG 221 (345)
Q Consensus 217 ~~~~~ 221 (345)
++..+
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98654
No 282
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.7e-16 Score=113.20 Aligned_cols=75 Identities=25% Similarity=0.528 Sum_probs=69.1
Q ss_pred CCcceEEEcCCCc-ccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeec
Q 019152 260 PQYTTVYVGNLAP-EVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAM 338 (345)
Q Consensus 260 ~~~~~l~V~nlp~-~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~ 338 (345)
++.++|||+|||. .+++++|+++|++|| .|..+.+. +|+|||+|.+.++|.+|+..|||. .+.|++|+|.|+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G--~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~---~~~g~~l~V~~a 80 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYG--HIMQINIK--NAFGFIQFDNPQSVRDAIECESQE---MNFGKKLILEVS 80 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTC--CCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCS---SCBTTTBCEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcC--CEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCC---eeCCcEEEEEEc
Confidence 4558999999998 999999999999999 78888886 789999999999999999999999 999999999999
Q ss_pred ccc
Q 019152 339 CGT 341 (345)
Q Consensus 339 ~~~ 341 (345)
+..
T Consensus 81 ~~~ 83 (96)
T 2kvi_A 81 SSN 83 (96)
T ss_dssp ECC
T ss_pred CcC
Confidence 753
No 283
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4e-16 Score=115.14 Aligned_cols=83 Identities=18% Similarity=0.483 Sum_probs=76.6
Q ss_pred CCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCcee--------C
Q 019152 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL--------G 209 (345)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~--------~ 209 (345)
..+.++|||+|||.++++++|+++|+.||.|..+.++.++ ++.++|||||+|.+.++|.+|+..|++..+ .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3456799999999999999999999999999999999996 899999999999999999999999999998 5
Q ss_pred CeeEEEEeccCC
Q 019152 210 SRQIRCNWATKG 221 (345)
Q Consensus 210 ~~~i~v~~~~~~ 221 (345)
+++|.|.|+.+.
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999998754
No 284
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.66 E-value=5.4e-17 Score=114.48 Aligned_cols=77 Identities=30% Similarity=0.493 Sum_probs=68.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecccc
Q 019152 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (345)
Q Consensus 57 ~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (345)
++|||+|||.++++++|+++|+.||.|.++.+..++ .+|||||+|.+.+ |.+|+..|||..+.|+.|+|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 579999999999999999999999999999998765 3689999999999 99999999999999999999999765
Q ss_pred CC
Q 019152 133 GQ 134 (345)
Q Consensus 133 ~~ 134 (345)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 43
No 285
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.4e-16 Score=117.51 Aligned_cols=81 Identities=26% Similarity=0.345 Sum_probs=76.5
Q ss_pred CceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEecc
Q 019152 140 GHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 219 (345)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~ 219 (345)
..++|||+|||.++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|+ .|++..+.|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3479999999999999999999999999999999999888999999999999999999999 899999999999999986
Q ss_pred CC
Q 019152 220 KG 221 (345)
Q Consensus 220 ~~ 221 (345)
..
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 53
No 286
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=1.3e-16 Score=108.96 Aligned_cols=72 Identities=22% Similarity=0.436 Sum_probs=67.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 57 ~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
++|||+|||.++++++|+++|+.||.|.++.+..++. +|||||+|.+.++|.+|+..++ ..+.|+.|+|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 4799999999999999999999999999999988753 6899999999999999999998 9999999999986
No 287
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=7.7e-16 Score=110.03 Aligned_cols=74 Identities=23% Similarity=0.249 Sum_probs=69.5
Q ss_pred CcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeeccc
Q 019152 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCG 340 (345)
Q Consensus 261 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~ 340 (345)
+.++|||+|+ ++++++|+++|++|| .|..|.+.+.+++|||+|.+.++|.+|+..||+. .++|++|+|.|++.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G--~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~---~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFG--NIIDLSMDPPRNCAFVTYEKMESADQAVAELNGT---QVESVQLKVNIARK 86 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTS--CEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTE---EETTEEEEEECCSS
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCC--CEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCC---eECCeEEEEEECCC
Confidence 4589999996 899999999999999 8999999999999999999999999999999999 99999999999975
Q ss_pred c
Q 019152 341 T 341 (345)
Q Consensus 341 ~ 341 (345)
.
T Consensus 87 ~ 87 (97)
T 1x5p_A 87 Q 87 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 288
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3e-16 Score=107.58 Aligned_cols=72 Identities=19% Similarity=0.215 Sum_probs=63.3
Q ss_pred Ccce-EEEcCCCcccCHHH----HHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEE
Q 019152 261 QYTT-VYVGNLAPEVTQLD----LHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKH 335 (345)
Q Consensus 261 ~~~~-l~V~nlp~~~t~~~----L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v 335 (345)
++.| |||+|||+++++++ |+++|++|| ..|.+|. .|+|||.|.+.++|.+|++.|+|. .+.||+|+|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yG-G~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~---~l~gr~i~v 78 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCG-GKVLSIT----GCSAILRFINQDSAERAQKRMENE---DVFGNRIIV 78 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTT-CCEEECC----TTCEEEEESSHHHHHHHHHHHTTC---CSSSSCCEE
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcC-CeeEEEe----cCEEEEEECCHHHHHHHHHHhcCC---ccCCceEEE
Confidence 3455 99999999999887 558999994 1788873 399999999999999999999999 999999999
Q ss_pred eeccc
Q 019152 336 DAMCG 340 (345)
Q Consensus 336 ~~~~~ 340 (345)
+||+.
T Consensus 79 ~~A~~ 83 (96)
T 2diu_A 79 SFTPK 83 (96)
T ss_dssp ESSCC
T ss_pred EecCC
Confidence 99986
No 289
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.66 E-value=7.2e-16 Score=120.43 Aligned_cols=82 Identities=24% Similarity=0.434 Sum_probs=75.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
..+.++|||+|||.++|+++|+++|+.||.|.+|.++.++. +|||||+|.+.++|.+|+..|++..|.|+.|+|.|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45678999999999999999999999999999999998764 47999999999999999999999999999999999
Q ss_pred ccccCC
Q 019152 129 AYASGQ 134 (345)
Q Consensus 129 ~~~~~~ 134 (345)
+.+...
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 986554
No 290
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.66 E-value=2e-16 Score=110.87 Aligned_cols=77 Identities=13% Similarity=0.198 Sum_probs=70.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccccC
Q 019152 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASG 133 (345)
Q Consensus 54 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 133 (345)
...++|||+|||+++++++|+++|+.| .|.++.+. +.+|||||+|.+.++|.+|+..|||..+.|+.|+|.++....
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 356889999999999999999999999 99999884 667899999999999999999999999999999999986543
No 291
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=1.8e-16 Score=113.22 Aligned_cols=81 Identities=16% Similarity=0.257 Sum_probs=71.2
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecccc
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYAS 132 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 132 (345)
..+.++|||+|||..+++++|+++|+.||.|..+ ......+|||||+|.+.++|.+|+..|+|..+.|+.|+|.++.++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 4567899999999999999999999999998777 222345689999999999999999999999999999999999766
Q ss_pred CC
Q 019152 133 GQ 134 (345)
Q Consensus 133 ~~ 134 (345)
..
T Consensus 92 ~~ 93 (96)
T 1fjc_A 92 GG 93 (96)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 292
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.66 E-value=2.6e-16 Score=114.18 Aligned_cols=82 Identities=17% Similarity=0.255 Sum_probs=74.5
Q ss_pred CCCceeEEECCCCccC------CHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe
Q 019152 138 TSGHFNIFVGDLSPEV------TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR 211 (345)
Q Consensus 138 ~~~~~~l~v~~lp~~~------~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~ 211 (345)
...+++|||+|||..+ ++++|+++|+.||.|..+.+. +.+|.++|||||+|.+.++|.+|+..|+|..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3445799999999999 789999999999999999888 36789999999999999999999999999999998
Q ss_pred -eEEEEeccCC
Q 019152 212 -QIRCNWATKG 221 (345)
Q Consensus 212 -~i~v~~~~~~ 221 (345)
.|.|.++...
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999998654
No 293
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.66 E-value=5.3e-16 Score=114.92 Aligned_cols=80 Identities=15% Similarity=0.240 Sum_probs=74.6
Q ss_pred CCceeEEECCCCccCCHHHHHHHhccCCC---cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 019152 139 SGHFNIFVGDLSPEVTDATLFACFSVYPS---CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (345)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v 215 (345)
...++|||+|||.++++++|+++|+.||. |..++++.++. |+++|||||+|.+.++|.+|+. +++..++|+.|.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 44578999999999999999999999999 89999999865 9999999999999999999999 9999999999999
Q ss_pred EeccC
Q 019152 216 NWATK 220 (345)
Q Consensus 216 ~~~~~ 220 (345)
.++..
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 99854
No 294
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=6.9e-16 Score=109.62 Aligned_cols=79 Identities=20% Similarity=0.254 Sum_probs=68.6
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCC-CeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccc
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKS-SYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~-~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (345)
....++|||+|||.++|+++|+++|+.||.|.+| +.++.+ .||||+|.+.++|.+|+. |+|..+.|+.|.|.++.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 3456899999999999999999999999999987 333322 299999999999999999 999999999999998876
Q ss_pred cCC
Q 019152 132 SGQ 134 (345)
Q Consensus 132 ~~~ 134 (345)
+..
T Consensus 82 ~~~ 84 (94)
T 2e5g_A 82 KEF 84 (94)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 295
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.66 E-value=3.6e-16 Score=118.03 Aligned_cols=80 Identities=16% Similarity=0.250 Sum_probs=74.8
Q ss_pred CCceeEEECCCCccCCHHHHHHHhccCCC---cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 019152 139 SGHFNIFVGDLSPEVTDATLFACFSVYPS---CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (345)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v 215 (345)
...++|||+|||.++++++|+++|+.||. |..+++++++. |+++|||||+|.+.++|.+|++ +++..+.|+.|.|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 44679999999999999999999999999 89999999966 9999999999999999999999 9999999999999
Q ss_pred EeccC
Q 019152 216 NWATK 220 (345)
Q Consensus 216 ~~~~~ 220 (345)
.++..
T Consensus 120 ~~a~~ 124 (136)
T 2hgl_A 120 FKSHR 124 (136)
T ss_dssp EECCH
T ss_pred EECCh
Confidence 98754
No 296
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=8.7e-16 Score=110.69 Aligned_cols=82 Identities=23% Similarity=0.355 Sum_probs=73.6
Q ss_pred CCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 019152 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (345)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~ 216 (345)
...+.++|||+|||.++++++|+++|+.||.| .++.+ .++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 34556899999999999999999999999977 45555 678999999999999999999999999999999999999
Q ss_pred eccCCC
Q 019152 217 WATKGA 222 (345)
Q Consensus 217 ~~~~~~ 222 (345)
|+..+.
T Consensus 87 ~a~~~~ 92 (101)
T 2fc9_A 87 LQGPRG 92 (101)
T ss_dssp ECSSCC
T ss_pred EcCCCC
Confidence 997764
No 297
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=2.5e-16 Score=113.52 Aligned_cols=80 Identities=16% Similarity=0.293 Sum_probs=70.0
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeec----CCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK----DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~----~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
+.+.++|||+|||.++|+++|+++|+.||.|.+ .++.+ +.+|||||+|.+.++|.+|+. |+|..+.|+.|+|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 445789999999999999999999999998877 33333 457899999999999999998 999999999999999
Q ss_pred ccccCC
Q 019152 129 AYASGQ 134 (345)
Q Consensus 129 ~~~~~~ 134 (345)
+.++..
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 976653
No 298
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.65 E-value=2.2e-16 Score=119.27 Aligned_cols=79 Identities=14% Similarity=0.077 Sum_probs=71.8
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCC---ceEEEEeecCC---CCeEEEEEeCHHHHHHHHHHhCCCccCCCceE
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGP---VEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIK 125 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~---v~~v~~~~~~~---~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~ 125 (345)
.+...++|||+|||+++|+++|+++|+.||. |.+|.++.++. +|||||+|.+.++|.+|+. +|+..+.|+.|+
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 3556788999999999999999999999999 88999998753 5899999999999999998 999999999999
Q ss_pred Eeeccc
Q 019152 126 VNWAYA 131 (345)
Q Consensus 126 v~~~~~ 131 (345)
|.++.+
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 998754
No 299
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=2.2e-15 Score=111.32 Aligned_cols=73 Identities=15% Similarity=0.136 Sum_probs=66.2
Q ss_pred eEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcce-EEEEeCCHHHHHHHHHhhCCCCccccCC--ceEEEeeccc
Q 019152 264 TVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGF-GFVRYSTHAEAALAIQMGNTTQSSYLFG--KQMKHDAMCG 340 (345)
Q Consensus 264 ~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~-afV~f~~~~~A~~Al~~l~~~~~~~~~g--~~l~v~~~~~ 340 (345)
.|||+||++.+++++|+++|++|| .|..|.+....|+ |||+|.+.++|.+|++.|||. .|.| ++|+|.||+.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG--~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~---~i~g~~~~l~V~~Ak~ 101 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVG--KVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGA---DIYAGCCTLKIEYARP 101 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTS--CEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTC---CCBTTBSEEEEECCSC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcC--CEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCC---EecCCCeEEEEEEecC
Confidence 467999999999999999999999 7888888765686 999999999999999999999 8877 6999999986
Q ss_pred c
Q 019152 341 T 341 (345)
Q Consensus 341 ~ 341 (345)
.
T Consensus 102 ~ 102 (124)
T 2e5i_A 102 T 102 (124)
T ss_dssp S
T ss_pred C
Confidence 5
No 300
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=4.6e-16 Score=111.97 Aligned_cols=82 Identities=16% Similarity=0.216 Sum_probs=74.1
Q ss_pred CCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 019152 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (345)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~ 217 (345)
....++|||+|||.++++++|+++|+.||.+ .+.+++++ +++++|||||+|.+.++|.+|+. +++..+.++.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3455799999999999999999999999954 99999996 89999999999999999999995 799999999999998
Q ss_pred ccCCC
Q 019152 218 ATKGA 222 (345)
Q Consensus 218 ~~~~~ 222 (345)
+....
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 86644
No 301
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1e-15 Score=110.51 Aligned_cols=82 Identities=17% Similarity=0.443 Sum_probs=71.3
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEe
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVN 127 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 127 (345)
.+.+.++|||+|||.++++++|+++|+.|+ .+.++.++. +|||||+|.+.++|.+|+..|++..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 456678999999999999999999999875 556666543 4899999999999999999999999999999999
Q ss_pred eccccCCCC
Q 019152 128 WAYASGQRE 136 (345)
Q Consensus 128 ~~~~~~~~~ 136 (345)
++.++....
T Consensus 88 ~a~~~~~~~ 96 (102)
T 2fc8_A 88 WAKPKGEGG 96 (102)
T ss_dssp ECCCCCSSS
T ss_pred EecCCCCCC
Confidence 998776543
No 302
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.3e-15 Score=109.93 Aligned_cols=85 Identities=29% Similarity=0.513 Sum_probs=76.1
Q ss_pred CCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 019152 136 EDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (345)
Q Consensus 136 ~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v 215 (345)
....+.++|||+|||.++++++|+++|+.| ..+.++.++.++.++|||||+|.+.++|.+|+..|++..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 344566899999999999999999999977 36778888788999999999999999999999999999999999999
Q ss_pred EeccCCCC
Q 019152 216 NWATKGAG 223 (345)
Q Consensus 216 ~~~~~~~~ 223 (345)
.|+.++..
T Consensus 87 ~~a~~~~~ 94 (102)
T 2fc8_A 87 DWAKPKGE 94 (102)
T ss_dssp EECCCCCS
T ss_pred EEecCCCC
Confidence 99987644
No 303
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.1e-16 Score=117.50 Aligned_cols=79 Identities=14% Similarity=0.149 Sum_probs=68.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
....++|||+|||+++|+++|+++|+.||.|.++.++.+. .+|||||+|.+.++|.+|+. +|+..|.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 4556899999999999999999999999999874444432 35899999999999999998 999999999999999
Q ss_pred cccc
Q 019152 129 AYAS 132 (345)
Q Consensus 129 ~~~~ 132 (345)
+.++
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8653
No 304
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=8e-16 Score=111.38 Aligned_cols=83 Identities=22% Similarity=0.253 Sum_probs=75.5
Q ss_pred CCCceeEEECCCCccCCHHHHHHHhccCCCcce-eEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 019152 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD-ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (345)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~ 216 (345)
....++|||+|||.++++++|+++|+.||.|.. +.++.+ .+|+++|||||+|.+.++|.+|+.. ++..++|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 345679999999999999999999999999987 888888 7899999999999999999999997 9999999999999
Q ss_pred eccCCC
Q 019152 217 WATKGA 222 (345)
Q Consensus 217 ~~~~~~ 222 (345)
++....
T Consensus 90 ~~~~~~ 95 (104)
T 1wg5_A 90 KSSRAE 95 (104)
T ss_dssp EECTTT
T ss_pred ECCHHH
Confidence 986543
No 305
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.4e-16 Score=116.56 Aligned_cols=87 Identities=22% Similarity=0.360 Sum_probs=76.0
Q ss_pred CCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 019152 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (345)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~ 217 (345)
..++++|||+|||.++++++|+++|+.||.|..+.+..+..++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34568999999999999999999999999996654444444789999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 019152 218 ATKGAGN 224 (345)
Q Consensus 218 ~~~~~~~ 224 (345)
+......
T Consensus 102 a~~~~~~ 108 (115)
T 2cpx_A 102 GKNKKQR 108 (115)
T ss_dssp CCCCSCC
T ss_pred ccCCCCC
Confidence 9876543
No 306
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3e-16 Score=117.58 Aligned_cols=81 Identities=25% Similarity=0.404 Sum_probs=75.1
Q ss_pred CCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 019152 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (345)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 218 (345)
...++|||+|||.++++++|+++|+.||.|..+.++.+..+|.++|||||+|.+.++|.+|+. +++..+.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 455799999999999999999999999999987777777889999999999999999999999 9999999999999998
Q ss_pred cC
Q 019152 219 TK 220 (345)
Q Consensus 219 ~~ 220 (345)
..
T Consensus 102 ~~ 103 (124)
T 1wel_A 102 TK 103 (124)
T ss_dssp CH
T ss_pred CH
Confidence 65
No 307
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=1e-16 Score=115.60 Aligned_cols=83 Identities=29% Similarity=0.466 Sum_probs=75.3
Q ss_pred CCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 019152 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (345)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~ 217 (345)
....++|||+|||.++++++|+++|+.||.|.. .++.+..++.++|||||+|.+.++|.+|++ |++..+.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345689999999999999999999999999888 666666778999999999999999999998 999999999999999
Q ss_pred ccCCC
Q 019152 218 ATKGA 222 (345)
Q Consensus 218 ~~~~~ 222 (345)
+..+.
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 87654
No 308
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.65 E-value=6.7e-16 Score=113.85 Aligned_cols=76 Identities=14% Similarity=0.203 Sum_probs=66.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCc-----eEEee
Q 019152 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQP-----IKVNW 128 (345)
Q Consensus 54 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~-----l~v~~ 128 (345)
...++|||+|||+++++++|+++|+.||.|.+|.++.+ |||||+|.+.++|.+|+..|||..|.|+. ++|..
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~ 90 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKV 90 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEecc
Confidence 34678999999999999999999999999999999877 89999999999999999999999999998 66666
Q ss_pred cccc
Q 019152 129 AYAS 132 (345)
Q Consensus 129 ~~~~ 132 (345)
..+.
T Consensus 91 ~~~~ 94 (115)
T 3beg_B 91 DGPR 94 (115)
T ss_dssp CC--
T ss_pred CCCC
Confidence 5543
No 309
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=5.1e-16 Score=112.69 Aligned_cols=77 Identities=14% Similarity=0.210 Sum_probs=69.5
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC---CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
....++|||+|||+++|+++|+++|+.| .|.+|.++.++ .+|+|||+|.+.++|.+|+ .+|+..+.|+.|.|..+
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEEC
Confidence 4456789999999999999999999999 88999998765 4689999999999999999 79999999999999877
Q ss_pred cc
Q 019152 130 YA 131 (345)
Q Consensus 130 ~~ 131 (345)
.+
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 54
No 310
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.64 E-value=3.3e-16 Score=114.06 Aligned_cols=79 Identities=9% Similarity=-0.001 Sum_probs=71.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCC---ceEEEEeecC---CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEE
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGP---VEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~---v~~v~~~~~~---~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (345)
....++|||+|||+++|+++|+++|+.||. |.+|.++.++ .+|||||+|.+.++|.+|+. +++..+.|+.|+|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 456788999999999999999999999998 8999998865 46899999999999999998 9999999999999
Q ss_pred eecccc
Q 019152 127 NWAYAS 132 (345)
Q Consensus 127 ~~~~~~ 132 (345)
.++.+.
T Consensus 87 ~~a~~~ 92 (107)
T 2lmi_A 87 YEINNE 92 (107)
T ss_dssp EECCHH
T ss_pred EECCHH
Confidence 988653
No 311
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.64 E-value=4.4e-16 Score=109.12 Aligned_cols=74 Identities=22% Similarity=0.209 Sum_probs=69.0
Q ss_pred cceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeecccc
Q 019152 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCGT 341 (345)
Q Consensus 262 ~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~~ 341 (345)
.++|||+|||..+++++|+++|++| .|..+.+.+.+|+|||+|.+.++|.+|++.|||. .++|++|+|+|++..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~---~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~---~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY---DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQY---SFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS---CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTE---EETTEEEEEEECCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC---CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCC---eECCcEEEEEEcCCC
Confidence 3789999999999999999999999 3778888888999999999999999999999999 999999999999765
No 312
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.64 E-value=1.7e-16 Score=107.83 Aligned_cols=75 Identities=24% Similarity=0.462 Sum_probs=70.9
Q ss_pred eEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 019152 143 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (345)
Q Consensus 143 ~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 218 (345)
+|||+|||.++++++|+++|+.||.|..+.+..++.++.++|||||+|.+.++|.+|++ +++..+.|+.+.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999998889999999999999999999998 4889999999999875
No 313
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.64 E-value=1.6e-16 Score=109.53 Aligned_cols=72 Identities=17% Similarity=0.314 Sum_probs=66.8
Q ss_pred eeEEECCCCccC------CHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCe-eEE
Q 019152 142 FNIFVGDLSPEV------TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR-QIR 214 (345)
Q Consensus 142 ~~l~v~~lp~~~------~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~-~i~ 214 (345)
++|||+|||..+ ++++|+++|++||.|..+.+. +.+|.++|||||+|.+.++|.+|+..|+|..+.|+ .|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 689999999999 679999999999999999887 35789999999999999999999999999999999 887
Q ss_pred E
Q 019152 215 C 215 (345)
Q Consensus 215 v 215 (345)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 314
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.64 E-value=9.1e-16 Score=115.03 Aligned_cols=79 Identities=28% Similarity=0.416 Sum_probs=72.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecc
Q 019152 55 TCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (345)
Q Consensus 55 ~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (345)
..++|||+|||.++|+++|+++|+.||.|.+|.+..++ .+|||||+|.+.++|.+|+ .|+|..|.|+.|+|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 46899999999999999999999999999999998874 3589999999999999999 899999999999999997
Q ss_pred ccCC
Q 019152 131 ASGQ 134 (345)
Q Consensus 131 ~~~~ 134 (345)
+...
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 315
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.64 E-value=7.5e-16 Score=107.93 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=62.2
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCc--cCCCceEEeecc
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRH--LFGQPIKVNWAY 130 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~--~~g~~l~v~~~~ 130 (345)
+.+..+|||+|||+++|+++|+++|+.||.|.+|.++.+ ++|||||+|.+.++|.+ +++.. +.|+.|.|.++.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 445678999999999999999999999999999999875 67999999999999984 45555 458899999987
Q ss_pred ccC
Q 019152 131 ASG 133 (345)
Q Consensus 131 ~~~ 133 (345)
++.
T Consensus 83 ~k~ 85 (89)
T 3d2w_A 83 PKH 85 (89)
T ss_dssp ---
T ss_pred CCC
Confidence 654
No 316
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.63 E-value=1.5e-15 Score=112.74 Aligned_cols=79 Identities=27% Similarity=0.337 Sum_probs=71.6
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccc
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYA 131 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 131 (345)
.+.+.++|||+|| ++|+++|+++|+.||.|.+|.+. +.+|||||+|.+.++|.+|+..|+|..+.|+.|+|.|+.+
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 3556789999995 79999999999999999999986 5668999999999999999999999999999999999987
Q ss_pred cCC
Q 019152 132 SGQ 134 (345)
Q Consensus 132 ~~~ 134 (345)
+..
T Consensus 111 ~~~ 113 (121)
T 2bz2_A 111 QPM 113 (121)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 317
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.63 E-value=4.1e-16 Score=113.52 Aligned_cols=81 Identities=19% Similarity=0.268 Sum_probs=74.9
Q ss_pred CCCceeEEECCCCccCCHHHHHHHhccCCC---cceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEE
Q 019152 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPS---CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIR 214 (345)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~ 214 (345)
....++|||+|||.++++++|+++|+.||. |..+.++.++. |+++|||||+|.+.++|.+|+. +++..++|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 345679999999999999999999999988 89999999866 9999999999999999999999 999999999999
Q ss_pred EEeccC
Q 019152 215 CNWATK 220 (345)
Q Consensus 215 v~~~~~ 220 (345)
|.++..
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 998764
No 318
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.8e-15 Score=107.91 Aligned_cols=76 Identities=21% Similarity=0.217 Sum_probs=68.6
Q ss_pred CcceEEEcCCCcccCHHHHHHHhhhcCceeeEEE-eeeCC--cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEee
Q 019152 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEV-RVQRD--KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDA 337 (345)
Q Consensus 261 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v-~i~~~--~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~ 337 (345)
..++|||+|||.++++++|+++|++|| .|..+ .+..+ .+.|||+|.+.++|.+|+..|||. .++|++|+|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G--~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~---~~~g~~l~V~~ 88 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYG--VVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGF---QLENFTLKVAY 88 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHS--CEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTC---BCSSCBCEEEE
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcC--CeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCC---EECCcEEEEEE
Confidence 347899999999999999999999999 78888 46655 455999999999999999999999 99999999999
Q ss_pred cccc
Q 019152 338 MCGT 341 (345)
Q Consensus 338 ~~~~ 341 (345)
++..
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 9864
No 319
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.63 E-value=9.8e-16 Score=107.22 Aligned_cols=72 Identities=25% Similarity=0.539 Sum_probs=66.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcc----C-------CceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCC
Q 019152 54 STCRSVYVGNIHTQVTEPLLQEVFSST----G-------PVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQ 122 (345)
Q Consensus 54 ~~~~~l~v~~lp~~~t~~~l~~~f~~~----G-------~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~ 122 (345)
.+.++|||+|||+++++++|+++|+.| | .|.++.+..+ +|||||+|.+.++|.+|+ .|||..+.|+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--kg~afV~f~~~~~a~~A~-~l~g~~~~g~ 80 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGIIFQGQ 80 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--SSEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--CcEEEEEcCCHHHHHHHH-hcCCCEECCe
Confidence 457899999999999999999999999 8 8999988765 689999999999999999 9999999999
Q ss_pred ceEEee
Q 019152 123 PIKVNW 128 (345)
Q Consensus 123 ~l~v~~ 128 (345)
.|+|+.
T Consensus 81 ~l~V~r 86 (87)
T 2hzc_A 81 SLKIRR 86 (87)
T ss_dssp ECEEEC
T ss_pred EEEEeC
Confidence 999874
No 320
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.63 E-value=1.7e-15 Score=116.65 Aligned_cols=74 Identities=19% Similarity=0.159 Sum_probs=67.3
Q ss_pred ceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeC--CcceEEEEeCCHHHHHHHHHhhCCCCccccCC--ceEEEeec
Q 019152 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR--DKGFGFVRYSTHAEAALAIQMGNTTQSSYLFG--KQMKHDAM 338 (345)
Q Consensus 263 ~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~--~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g--~~l~v~~~ 338 (345)
.+|||+||++.+|+++|+++|++|| .|.+|.+.. .+++|||+|.+.++|.+|++.|||. .|.| ++|+|+|+
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG--~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~---~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFG--TVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQ---NIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHS--CEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTB---CSSSSCSCEEEEEC
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcC--CEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCC---EecCCCcEEEEEEe
Confidence 5689999999999999999999999 788988863 3679999999999999999999999 8855 99999999
Q ss_pred ccc
Q 019152 339 CGT 341 (345)
Q Consensus 339 ~~~ 341 (345)
+..
T Consensus 122 k~~ 124 (164)
T 1sjr_A 122 KLT 124 (164)
T ss_dssp SSS
T ss_pred cCC
Confidence 875
No 321
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.63 E-value=1.4e-15 Score=112.82 Aligned_cols=74 Identities=20% Similarity=0.218 Sum_probs=67.1
Q ss_pred ceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeC-Ccce-EEEEeCCHHHHHHHHHhhCCCCccccCC--ceEEEeec
Q 019152 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQR-DKGF-GFVRYSTHAEAALAIQMGNTTQSSYLFG--KQMKHDAM 338 (345)
Q Consensus 263 ~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~-~~~~-afV~f~~~~~A~~Al~~l~~~~~~~~~g--~~l~v~~~ 338 (345)
..|||+||++.+|+++|+++|++|| .|.+|.+.. .+++ |||+|.+.++|.+|++.|||. .|.| ++|+|.|+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG--~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~---~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFG--TVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQ---NIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSS--CEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTC---EEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcC--CEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCC---eecCCCcEEEEEec
Confidence 4678999999999999999999999 788888764 3677 999999999999999999999 8877 99999999
Q ss_pred ccc
Q 019152 339 CGT 341 (345)
Q Consensus 339 ~~~ 341 (345)
+..
T Consensus 104 k~~ 106 (130)
T 3zzy_A 104 KLT 106 (130)
T ss_dssp SCS
T ss_pred CCC
Confidence 865
No 322
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.62 E-value=4.1e-16 Score=105.86 Aligned_cols=71 Identities=17% Similarity=0.300 Sum_probs=65.2
Q ss_pred eEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 58 SVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 58 ~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
+|||+|||.++++++|+++|+.||+|.++.+..++ .+|||||+|.+.++|.+|+. +++..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999998764 36899999999999999997 4899999999999875
No 323
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.62 E-value=6.4e-15 Score=116.96 Aligned_cols=82 Identities=20% Similarity=0.262 Sum_probs=75.0
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC---CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
.+.+.++|||+|||..+++++|+++|+.||.|.+|.+..++ .+|||||+|.+.++|.+|+..|+|..+.|+.|+|.+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45567899999999999999999999999999999998865 458999999999999999999999999999999999
Q ss_pred ccccC
Q 019152 129 AYASG 133 (345)
Q Consensus 129 ~~~~~ 133 (345)
+....
T Consensus 164 a~~~~ 168 (177)
T 2f3j_A 164 VASQI 168 (177)
T ss_dssp ESSGG
T ss_pred ecCCC
Confidence 87543
No 324
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.2e-15 Score=109.33 Aligned_cols=77 Identities=19% Similarity=0.264 Sum_probs=71.4
Q ss_pred ceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 019152 141 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (345)
Q Consensus 141 ~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 220 (345)
..+|||+|||.++++++|+++|+.| .|..+.++.++ +|+++|||||+|.+.++|.+|+ .+++..++|+.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 4699999999999999999999999 89999999985 4999999999999999999999 5899999999999987743
No 325
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.1e-15 Score=110.99 Aligned_cols=80 Identities=15% Similarity=0.198 Sum_probs=71.9
Q ss_pred eeEEECCC----CccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCC----HHH----HHHHHH--HhCCce
Q 019152 142 FNIFVGDL----SPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN----QQD----AQSAIN--DLTGKW 207 (345)
Q Consensus 142 ~~l~v~~l----p~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~----~~~----a~~a~~--~l~~~~ 207 (345)
..|||+|| |..+++++|+++|+.||+|.++.++.|+.+|.++|||||+|.+ ++. |.+|+. .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999999999999999996 322 788888 789999
Q ss_pred eCCeeEEEEeccCC
Q 019152 208 LGSRQIRCNWATKG 221 (345)
Q Consensus 208 ~~~~~i~v~~~~~~ 221 (345)
+.|+.|+|.+....
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999986543
No 326
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=108.68 Aligned_cols=81 Identities=16% Similarity=0.338 Sum_probs=72.7
Q ss_pred CCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 019152 137 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (345)
Q Consensus 137 ~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~ 216 (345)
...+.++|||+|||..+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34456899999999999999999999999988766 2568899999999999999999999999999999999999
Q ss_pred eccCCC
Q 019152 217 WATKGA 222 (345)
Q Consensus 217 ~~~~~~ 222 (345)
++.++.
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 987654
No 327
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.62 E-value=7.4e-16 Score=127.64 Aligned_cols=81 Identities=16% Similarity=0.267 Sum_probs=76.3
Q ss_pred CceeEEECCCCccCCHHHHHHHhccCC--CcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 019152 140 GHFNIFVGDLSPEVTDATLFACFSVYP--SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (345)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~ 217 (345)
..++|||+|||.++++++|+++|+.|| .|..++|++++.+++++|||||+|.+.++|.+|+..|++..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 456899999999999999999999999 999999999988999999999999999999999999999999999999999
Q ss_pred ccC
Q 019152 218 ATK 220 (345)
Q Consensus 218 ~~~ 220 (345)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 854
No 328
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6.6e-16 Score=108.27 Aligned_cols=80 Identities=21% Similarity=0.274 Sum_probs=66.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccccC
Q 019152 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASG 133 (345)
Q Consensus 54 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 133 (345)
.++++|||+|||.++++++|+++|+.||.|.+|.++.+ .+|||||+|.+.++|.+|+. ....+.|+.|.|.++.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPKH 79 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCCCC
Confidence 35689999999999999999999999999999999876 67899999999999976532 1344588999999988765
Q ss_pred CCC
Q 019152 134 QRE 136 (345)
Q Consensus 134 ~~~ 136 (345)
...
T Consensus 80 ~~~ 82 (88)
T 1wf0_A 80 NSN 82 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 443
No 329
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.61 E-value=3.8e-16 Score=118.27 Aligned_cols=123 Identities=14% Similarity=0.101 Sum_probs=73.4
Q ss_pred CeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeeccccCCCCCCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEee
Q 019152 95 SYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVM 174 (345)
Q Consensus 95 ~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~ 174 (345)
+.|+.+|.-++.+..++...... ..|...--... ...........++|||+|||.++++++|+++|+.|| +..+.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g-~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~ 78 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSG-DSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIE 78 (139)
T ss_dssp ---------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECC
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCC-CcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEE
Confidence 35666666666655555433222 22222111111 111122334457999999999999999999999999 6799999
Q ss_pred ecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccCCC
Q 019152 175 WDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 222 (345)
Q Consensus 175 ~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~~~ 222 (345)
+++. ++++|||||+|.+.++|.+|+ .+++..+.|+.|.|.++....
T Consensus 79 ~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 79 IGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp CSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred ECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 9865 999999999999999999999 689999999999999886643
No 330
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.40 E-value=5.1e-17 Score=120.34 Aligned_cols=86 Identities=28% Similarity=0.368 Sum_probs=79.3
Q ss_pred CCCceeEEECCCCccCCHHHHHHHhccCCCcce--------eEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 019152 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSD--------ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (345)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~ 209 (345)
..+.++|||+|||.++++++|+++|+.||.|.. +.++.++.++.++|||||+|.+.++|.+|+..|++..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345679999999999999999999999999998 889988888999999999999999999999999999999
Q ss_pred CeeEEEEeccCCCC
Q 019152 210 SRQIRCNWATKGAG 223 (345)
Q Consensus 210 ~~~i~v~~~~~~~~ 223 (345)
|+.|.|.++..+..
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999877543
No 331
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.60 E-value=3.3e-15 Score=118.64 Aligned_cols=83 Identities=25% Similarity=0.354 Sum_probs=77.9
Q ss_pred CCCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEe
Q 019152 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNW 217 (345)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~ 217 (345)
...+++|||+|||..+++++|+++|+.||.|..+.+..++ ++.++|||||+|.+.++|.+|+..|++..+.|+.|.|.|
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999986 899999999999999999999999999999999999999
Q ss_pred ccCC
Q 019152 218 ATKG 221 (345)
Q Consensus 218 ~~~~ 221 (345)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8654
No 332
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.60 E-value=2.8e-15 Score=111.31 Aligned_cols=75 Identities=23% Similarity=0.242 Sum_probs=69.7
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeecc
Q 019152 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMC 339 (345)
Q Consensus 260 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~ 339 (345)
.+.++|||+|+ ++++++|+++|++|| .|..|.+.+.+|+|||+|.+.++|.+|+..|||. .++|++|+|.|++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G--~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~---~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFG--NIIDLSMDPPRNCAFVTYEKMESADQAVAELNGT---QVESVQLKVNIAR 109 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTC--CCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTC---BCSSCBCEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccC--CEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCC---EECCeEEEEEEeC
Confidence 34589999996 699999999999999 7999999999999999999999999999999999 9999999999997
Q ss_pred cc
Q 019152 340 GT 341 (345)
Q Consensus 340 ~~ 341 (345)
..
T Consensus 110 ~~ 111 (121)
T 2bz2_A 110 KQ 111 (121)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 333
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.60 E-value=6.6e-16 Score=116.97 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=70.0
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC---CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~---~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
.+...++|||+|||+++|+++|+++|+.|| |.+|.++.++ .+|||||+|.+.++|.+|+ .+|+..|.|+.|.|.+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 345678899999999999999999999999 6699998765 3689999999999999999 7899999999999998
Q ss_pred ccccC
Q 019152 129 AYASG 133 (345)
Q Consensus 129 ~~~~~ 133 (345)
+.+..
T Consensus 120 a~~~~ 124 (139)
T 2hgn_A 120 NSTTG 124 (139)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 87654
No 334
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.60 E-value=1.1e-15 Score=110.46 Aligned_cols=81 Identities=25% Similarity=0.457 Sum_probs=75.4
Q ss_pred CCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 019152 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (345)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 218 (345)
...++|||+|||.++++++|+++|+.||.|..+.++.++ +|.++|||||+|.+.++|.+|+. ++..+.|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 345799999999999999999999999999999999997 89999999999999999999998 899999999999998
Q ss_pred cCCC
Q 019152 219 TKGA 222 (345)
Q Consensus 219 ~~~~ 222 (345)
..+.
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 7654
No 335
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.60 E-value=2.6e-15 Score=110.65 Aligned_cols=72 Identities=22% Similarity=0.302 Sum_probs=65.5
Q ss_pred cceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCce-----EEEe
Q 019152 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQ-----MKHD 336 (345)
Q Consensus 262 ~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~-----l~v~ 336 (345)
.++|||+|||.++++++|+++|++|| .|..|.+..+ ++|||+|.+.++|.+|++.||+. .|+|++ |+|.
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G--~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~---~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAG--DVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNT---KFRSHEGETAYIRVK 89 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGS--CEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTC---BCCCTTSCCCBCEEE
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcC--CeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCC---EECCcEeeeEEEEec
Confidence 47899999999999999999999999 8999999887 99999999999999999999999 999999 5555
Q ss_pred ecc
Q 019152 337 AMC 339 (345)
Q Consensus 337 ~~~ 339 (345)
.++
T Consensus 90 ~~~ 92 (115)
T 3beg_B 90 VDG 92 (115)
T ss_dssp ECC
T ss_pred cCC
Confidence 543
No 336
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.60 E-value=2.8e-15 Score=123.35 Aligned_cols=77 Identities=23% Similarity=0.345 Sum_probs=71.0
Q ss_pred CCcceEEEcCCCccc---------CHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCcccc--
Q 019152 260 PQYTTVYVGNLAPEV---------TQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYL-- 328 (345)
Q Consensus 260 ~~~~~l~V~nlp~~~---------t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~-- 328 (345)
...++|||+||+..+ ++++|+++|++|| .|.+|++..++|+|||+|.+.++|..|++.|+|. .+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG--~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~---~l~~ 206 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLG--DIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQ---TLLL 206 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTS--CEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTC---CCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccC--CEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCC---EEec
Confidence 345899999999998 7999999999999 8999999999999999999999999999999999 77
Q ss_pred ----------CCceEEEeecccc
Q 019152 329 ----------FGKQMKHDAMCGT 341 (345)
Q Consensus 329 ----------~g~~l~v~~~~~~ 341 (345)
.|+.|.|.||++.
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC--
T ss_pred cccccccccCCCCEEEEEEccCC
Confidence 8999999999863
No 337
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.59 E-value=1.5e-15 Score=116.76 Aligned_cols=86 Identities=22% Similarity=0.351 Sum_probs=73.8
Q ss_pred CCCceeEEECCCCccCCHHHHHHHhccCCCcceeE--e---eecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 019152 138 TSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR--V---MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQ 212 (345)
Q Consensus 138 ~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~--~---~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~ 212 (345)
..++++|||+|||.++++++|+++|+.||.|..+. + ++...+|.++|||||+|.+.++|.+|+..|++..+.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 34567999999999999999999999999998751 1 111246889999999999999999999999999999999
Q ss_pred EEEEeccCCCC
Q 019152 213 IRCNWATKGAG 223 (345)
Q Consensus 213 i~v~~~~~~~~ 223 (345)
|.|.|+.....
T Consensus 122 l~V~~a~~~~~ 132 (143)
T 3egn_A 122 MVVQFARSARP 132 (143)
T ss_dssp CEEEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999976543
No 338
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.5e-15 Score=111.34 Aligned_cols=79 Identities=23% Similarity=0.216 Sum_probs=72.0
Q ss_pred CceeEEECCCCccCCHHHHHHHhccCCCc----ceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 019152 140 GHFNIFVGDLSPEVTDATLFACFSVYPSC----SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (345)
Q Consensus 140 ~~~~l~v~~lp~~~~~~~l~~~f~~~g~v----~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v 215 (345)
...+|||+|||.++++++|+++|+.||.| ..+.++.+ .+|+++|||||+|.+.++|.+|+.. ++..++|+.|.|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 45799999999999999999999999875 68999988 5899999999999999999999985 999999999999
Q ss_pred EeccC
Q 019152 216 NWATK 220 (345)
Q Consensus 216 ~~~~~ 220 (345)
..+..
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88754
No 339
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.59 E-value=5.7e-15 Score=103.28 Aligned_cols=73 Identities=22% Similarity=0.399 Sum_probs=66.9
Q ss_pred CcceEEEcCCCcccCHHHHHHHhhhc----Cce-----eeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCc
Q 019152 261 QYTTVYVGNLAPEVTQLDLHRHFHSL----GAG-----VIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK 331 (345)
Q Consensus 261 ~~~~l~V~nlp~~~t~~~L~~~f~~~----G~~-----~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~ 331 (345)
+.++|||+|||.++++++|+++|++| |.. .|.++.+.+++|+|||+|.+.++|.+|+ .|||. .++|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~---~~~g~ 80 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGI---IFQGQ 80 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTC---EETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCC---EECCe
Confidence 44899999999999999999999999 611 5889999999999999999999999999 99999 99999
Q ss_pred eEEEee
Q 019152 332 QMKHDA 337 (345)
Q Consensus 332 ~l~v~~ 337 (345)
+|+|+.
T Consensus 81 ~l~V~r 86 (87)
T 2hzc_A 81 SLKIRR 86 (87)
T ss_dssp ECEEEC
T ss_pred EEEEeC
Confidence 999974
No 340
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.59 E-value=2.5e-15 Score=111.58 Aligned_cols=79 Identities=15% Similarity=0.125 Sum_probs=68.8
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHhccCCce--EEEEeecC---CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEE
Q 019152 52 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVE--GCKLIRKD---KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~--~v~~~~~~---~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (345)
.+...++|||+|||+++|+++|+++|+.| .|. +|.++.++ .+|||||+|.+.++|.+|+.. ++..|.|+.|.|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 34567889999999999999999999999 566 89888764 468999999999999999974 789999999999
Q ss_pred eecccc
Q 019152 127 NWAYAS 132 (345)
Q Consensus 127 ~~~~~~ 132 (345)
.++.++
T Consensus 116 ~~a~~~ 121 (126)
T 2hgm_A 116 FKSSQE 121 (126)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 887543
No 341
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.37 E-value=1.1e-16 Score=118.56 Aligned_cols=83 Identities=23% Similarity=0.319 Sum_probs=74.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceE--------EEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccC
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEG--------CKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLF 120 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~--------v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~ 120 (345)
..+.++|||+|||.++++++|+++|+.||.|.+ |.++.++ .+|||||+|.+.++|.+|+..|||..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 345688999999999999999999999999998 8888764 3689999999999999999999999999
Q ss_pred CCceEEeeccccCCC
Q 019152 121 GQPIKVNWAYASGQR 135 (345)
Q Consensus 121 g~~l~v~~~~~~~~~ 135 (345)
|+.|+|.++.++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999876543
No 342
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.8e-15 Score=112.11 Aligned_cols=77 Identities=16% Similarity=0.129 Sum_probs=68.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCc----eEEEEeecCC---CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEE
Q 019152 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPV----EGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (345)
Q Consensus 54 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v----~~v~~~~~~~---~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (345)
...++|||+|||+++|+++|+++|+.||.| .+|.++.+.. +|||||+|.+.++|.+|+.. ++..+.|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 456789999999999999999999999975 6899987643 58999999999999999976 999999999999
Q ss_pred eeccc
Q 019152 127 NWAYA 131 (345)
Q Consensus 127 ~~~~~ 131 (345)
..+.+
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 87753
No 343
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.58 E-value=5.5e-15 Score=113.63 Aligned_cols=81 Identities=26% Similarity=0.393 Sum_probs=70.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceE--------EEEee-cCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCce
Q 019152 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEG--------CKLIR-KDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPI 124 (345)
Q Consensus 54 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~--------v~~~~-~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l 124 (345)
.++++|||+|||+++|+++|+++|+.||.|.+ +.+.. .+.+|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 34688999999999999999999999999876 33333 3457899999999999999999999999999999
Q ss_pred EEeeccccCC
Q 019152 125 KVNWAYASGQ 134 (345)
Q Consensus 125 ~v~~~~~~~~ 134 (345)
.|.++.....
T Consensus 123 ~V~~a~~~~~ 132 (143)
T 3egn_A 123 VVQFARSARP 132 (143)
T ss_dssp EEEECCCSCC
T ss_pred EEEECCCCCC
Confidence 9999976543
No 344
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.58 E-value=3.3e-15 Score=123.72 Aligned_cols=78 Identities=21% Similarity=0.212 Sum_probs=71.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhccC--CceEEEEeecCC----CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 55 TCRSVYVGNIHTQVTEPLLQEVFSSTG--PVEGCKLIRKDK----SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 55 ~~~~l~v~~lp~~~t~~~l~~~f~~~G--~v~~v~~~~~~~----~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
..++|||+|||+++|+++|+++|+.|| .|.+|+|+.++. +|||||+|.+.++|.+||..||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999998863 47999999999999999999999999999999999
Q ss_pred cccc
Q 019152 129 AYAS 132 (345)
Q Consensus 129 ~~~~ 132 (345)
+.+.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8643
No 345
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.3e-14 Score=105.05 Aligned_cols=83 Identities=18% Similarity=0.202 Sum_probs=71.4
Q ss_pred CCCCcceEEEeCCCCCCC-----------HHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccC
Q 019152 52 DPSTCRSVYVGNIHTQVT-----------EPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLF 120 (345)
Q Consensus 52 ~~~~~~~l~v~~lp~~~t-----------~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~ 120 (345)
.+.++++|+|.||..... +++|+++|++||.|.+|.+.....+|||||+|.+.++|.+|+..|||..+.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 466789999999954332 689999999999999997744446799999999999999999999999999
Q ss_pred CCceEEeeccccCC
Q 019152 121 GQPIKVNWAYASGQ 134 (345)
Q Consensus 121 g~~l~v~~~~~~~~ 134 (345)
|+.|+|.++.++..
T Consensus 91 gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 91 GRQITAQAWDGTTD 104 (112)
T ss_dssp TEECEEEECCSCCC
T ss_pred CcEEEEEEeCCCCC
Confidence 99999999976543
No 346
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.58 E-value=8.9e-15 Score=102.43 Aligned_cols=74 Identities=18% Similarity=0.285 Sum_probs=62.4
Q ss_pred CCcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC-cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeec
Q 019152 260 PQYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAM 338 (345)
Q Consensus 260 ~~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~-~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~ 338 (345)
++..+|||+|||+++|+++|+++|++|| .|.++.+.++ +|+|||+|.+.++|.+ +++..+ .+.|++|.|+++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G--~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~-~~~g~~v~v~~a 81 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYG--EVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDL-IIKGISVHISNA 81 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTS--CEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEE-EETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccC--CEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCc-ccCCEEEEEEEc
Confidence 3458999999999999999999999999 8999999865 8999999999999983 466622 467999999998
Q ss_pred cc
Q 019152 339 CG 340 (345)
Q Consensus 339 ~~ 340 (345)
+.
T Consensus 82 ~~ 83 (89)
T 3d2w_A 82 EP 83 (89)
T ss_dssp C-
T ss_pred CC
Confidence 74
No 347
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.3e-14 Score=102.99 Aligned_cols=78 Identities=19% Similarity=0.338 Sum_probs=68.5
Q ss_pred CCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEec
Q 019152 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 218 (345)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~ 218 (345)
...++|||+|||.++++++|+++|+.||.|..+ +.++.++. ||||+|.+.++|.+|+. |++..+.|+.|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 345699999999999999999999999999987 54545554 99999999999999999 9999999999999987
Q ss_pred cCCC
Q 019152 219 TKGA 222 (345)
Q Consensus 219 ~~~~ 222 (345)
..+.
T Consensus 80 ~~~~ 83 (94)
T 2e5g_A 80 EQKE 83 (94)
T ss_dssp CCSC
T ss_pred CcCC
Confidence 6543
No 348
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.57 E-value=1.2e-14 Score=104.65 Aligned_cols=79 Identities=22% Similarity=0.259 Sum_probs=69.5
Q ss_pred CCCcceEEEeCCCC-----CCCHHHHHHHHhccCCceEEEEeecC-----CCCeEEEEEeCHHHHHHHHHHhCCCccCCC
Q 019152 53 PSTCRSVYVGNIHT-----QVTEPLLQEVFSSTGPVEGCKLIRKD-----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQ 122 (345)
Q Consensus 53 ~~~~~~l~v~~lp~-----~~t~~~l~~~f~~~G~v~~v~~~~~~-----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~ 122 (345)
+.++++|+|.|+.. +.++++|++.|++||.|.+|.+..++ ++|+|||+|.+.++|.+|+..|||..+.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34678999999973 23789999999999999999998763 468999999999999999999999999999
Q ss_pred ceEEeeccc
Q 019152 123 PIKVNWAYA 131 (345)
Q Consensus 123 ~l~v~~~~~ 131 (345)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999864
No 349
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.57 E-value=2.9e-15 Score=108.10 Aligned_cols=79 Identities=20% Similarity=0.420 Sum_probs=71.6
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC---CCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK---SSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~---~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
...+++|||+|||.++++++|+++|+.||.|.++.+..++. +|||||+|.+.++|.+|+. ++..+.|+.|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 34568999999999999999999999999999999998763 4899999999999999997 899999999999998
Q ss_pred cccC
Q 019152 130 YASG 133 (345)
Q Consensus 130 ~~~~ 133 (345)
..+.
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 7654
No 350
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.57 E-value=2e-14 Score=115.89 Aligned_cols=116 Identities=9% Similarity=0.072 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHh--CCCccCCCceEEeeccccCCCC------CCCCceeEEECCCCccCCHHHHHHHhccCCCcceeEee
Q 019152 103 DRRSAAMAILSL--NGRHLFGQPIKVNWAYASGQRE------DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVM 174 (345)
Q Consensus 103 ~~~~A~~a~~~l--~~~~~~g~~l~v~~~~~~~~~~------~~~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~ 174 (345)
+.+.+..|+... ....+.+...+|......+.+. .....++|||+|||.++++++|+++|+.||.|..+++.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 567777787665 4455666666666553222111 11235789999999999999999999999999999999
Q ss_pred ecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 019152 175 WDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (345)
Q Consensus 175 ~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 220 (345)
++. ++.++|||||+|.+.++|.+|+..+ +..+.|+.|.|.++..
T Consensus 143 ~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 143 RTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp ECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 884 5899999999999999999999865 5589999999998754
No 351
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.56 E-value=3.9e-15 Score=110.51 Aligned_cols=79 Identities=20% Similarity=0.238 Sum_probs=71.3
Q ss_pred CCceeEEECCCCccCCHHHHHHHhccCCCcc--eeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEE
Q 019152 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCS--DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCN 216 (345)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~--~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~ 216 (345)
...++|||+|||.++++++|+++|+.| .|. .++++.++. |+++|||||+|.+.++|.+|++. ++..++|+.|.|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 445789999999999999999999999 666 899999865 99999999999999999999984 7799999999998
Q ss_pred eccC
Q 019152 217 WATK 220 (345)
Q Consensus 217 ~~~~ 220 (345)
++..
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8754
No 352
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.56 E-value=2.2e-14 Score=103.33 Aligned_cols=82 Identities=13% Similarity=0.179 Sum_probs=72.0
Q ss_pred CCceeEEECCCCc-----cCCHHHHHHHhccCCCcceeEeeecCCC-CCcccEEEEEeCCHHHHHHHHHHhCCceeCCee
Q 019152 139 SGHFNIFVGDLSP-----EVTDATLFACFSVYPSCSDARVMWDQKT-GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQ 212 (345)
Q Consensus 139 ~~~~~l~v~~lp~-----~~~~~~l~~~f~~~g~v~~~~~~~~~~~-~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~ 212 (345)
.++++|+|.|+.. +-++++|++.|++||.|.++.+.+++.+ +.++|+|||+|.+.++|.+|+..|+|..+.|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3467999999963 2368999999999999999999988653 688999999999999999999999999999999
Q ss_pred EEEEeccC
Q 019152 213 IRCNWATK 220 (345)
Q Consensus 213 i~v~~~~~ 220 (345)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999854
No 353
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.56 E-value=4e-14 Score=128.17 Aligned_cols=80 Identities=20% Similarity=0.404 Sum_probs=73.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC----CCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 54 STCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD----KSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 54 ~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~----~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
.+.++|||+|||+.+|+++|.++|+.||.|..|.|+.++ .+|||||+|.+.++|..||..|||..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 456789999999999999999999999999999998764 3689999999999999999999999999999999999
Q ss_pred cccC
Q 019152 130 YASG 133 (345)
Q Consensus 130 ~~~~ 133 (345)
.+..
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 7643
No 354
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=5.3e-14 Score=103.51 Aligned_cols=77 Identities=19% Similarity=0.369 Sum_probs=66.4
Q ss_pred CCceeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCC---CCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEE
Q 019152 139 SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKT---GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRC 215 (345)
Q Consensus 139 ~~~~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v 215 (345)
...++|||+|||.++++++|+++|++||.|. +.++.+..+ |.++|||||+|.+.++|.+|++.|+ .+.|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 3457999999999999999999999999999 778877666 7999999999999999999999883 366777766
Q ss_pred Eec
Q 019152 216 NWA 218 (345)
Q Consensus 216 ~~~ 218 (345)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 544
No 355
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=2.2e-14 Score=105.61 Aligned_cols=74 Identities=20% Similarity=0.280 Sum_probs=61.2
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeec-------CCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceE
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRK-------DKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIK 125 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~-------~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~ 125 (345)
...+++|||+|||+++|+++|+++|+.||.|. +.++.+ +.+|||||+|.+.++|.+|+..++ .+.|+.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 34568899999999999999999999999998 777654 346899999999999999999883 35666666
Q ss_pred Eeec
Q 019152 126 VNWA 129 (345)
Q Consensus 126 v~~~ 129 (345)
+..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 6543
No 356
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.52 E-value=3e-14 Score=117.26 Aligned_cols=79 Identities=23% Similarity=0.447 Sum_probs=70.9
Q ss_pred CCCcceEEEeCCCCCC---------CHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCcc----
Q 019152 53 PSTCRSVYVGNIHTQV---------TEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHL---- 119 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~---------t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~---- 119 (345)
....++|||+||+..+ ++++|+++|+.||.|.+|.++.+ +|||||+|.+.++|..|+.+|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~--kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES--KNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC--CCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 4567899999999998 79999999999999999999865 57999999999999999999999999
Q ss_pred --------CCCceEEeeccccC
Q 019152 120 --------FGQPIKVNWAYASG 133 (345)
Q Consensus 120 --------~g~~l~v~~~~~~~ 133 (345)
.|+.|.|.|+....
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp STTGGGGGGSCCCEEEECC---
T ss_pred cccccccCCCCEEEEEEccCCC
Confidence 89999999998654
No 357
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.1e-14 Score=101.89 Aligned_cols=74 Identities=18% Similarity=0.287 Sum_probs=63.7
Q ss_pred CcceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC-cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeecc
Q 019152 261 QYTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMC 339 (345)
Q Consensus 261 ~~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~-~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~ 339 (345)
+.++|||+|||.++++++|+++|++|| .|..+.+.++ +|+|||+|.+.++|.+| ++..+ .+.|++|+|.|++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G--~i~~v~i~~~~~g~afV~f~~~~~a~~~----~~~~~-~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYG--DVMDVFIPKPFRAFAFVTFADDQIAQSL----CGEDL-IIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTS--CCCEEECCSSCCSCCEEECSCHHHHHHT----TTCEE-EETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcC--CeeEEEEecCCCCEEEEEECCHHHHHHH----hcCCc-eeCCEEEEEEecC
Confidence 348999999999999999999999999 7999998765 89999999999999754 44421 6799999999987
Q ss_pred cc
Q 019152 340 GT 341 (345)
Q Consensus 340 ~~ 341 (345)
..
T Consensus 77 ~~ 78 (88)
T 1wf0_A 77 PK 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 358
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.51 E-value=2.4e-14 Score=103.97 Aligned_cols=74 Identities=16% Similarity=0.186 Sum_probs=65.4
Q ss_pred ceEEEeCC----CCCCCHHHHHHHHhccCCceEEEEeecCCC----CeEEEEEeC----HHH----HHHHHH--HhCCCc
Q 019152 57 RSVYVGNI----HTQVTEPLLQEVFSSTGPVEGCKLIRKDKS----SYGFIHYFD----RRS----AAMAIL--SLNGRH 118 (345)
Q Consensus 57 ~~l~v~~l----p~~~t~~~l~~~f~~~G~v~~v~~~~~~~~----~~afv~f~~----~~~----A~~a~~--~l~~~~ 118 (345)
..|||+|| |+.+++.+|+++|+.||+|.++.++.|+.+ |||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 999999999999999999999999999864 899999996 433 788888 789999
Q ss_pred cCCCceEEeecc
Q 019152 119 LFGQPIKVNWAY 130 (345)
Q Consensus 119 ~~g~~l~v~~~~ 130 (345)
|.|+.|+|..-.
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999654
No 359
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.49 E-value=8.8e-14 Score=100.23 Aligned_cols=77 Identities=13% Similarity=0.149 Sum_probs=66.7
Q ss_pred CCcceEEEcCC--CcccC--------HHHHHHHhhhcCceeeEEEeeeCC--------cceEEEEeCCHHHHHHHHHhhC
Q 019152 260 PQYTTVYVGNL--APEVT--------QLDLHRHFHSLGAGVIEEVRVQRD--------KGFGFVRYSTHAEAALAIQMGN 321 (345)
Q Consensus 260 ~~~~~l~V~nl--p~~~t--------~~~L~~~f~~~G~~~i~~v~i~~~--------~~~afV~f~~~~~A~~Al~~l~ 321 (345)
.++++|.|.|+ |..+. +++|++.|++|| .|.+|.|.++ +|+|||+|.+.++|.+|+..||
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G--~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~ln 80 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYG--LVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLT 80 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTS--CEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccC--CEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhC
Confidence 35689999999 43443 368999999999 8999999753 6999999999999999999999
Q ss_pred CCCccccCCceEEEeecccc
Q 019152 322 TTQSSYLFGKQMKHDAMCGT 341 (345)
Q Consensus 322 ~~~~~~~~g~~l~v~~~~~~ 341 (345)
|+ .++||.|+|+|+...
T Consensus 81 G~---~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 81 GR---KFANRVVVTKYCDPD 97 (105)
T ss_dssp TC---EETTEECEEEEECHH
T ss_pred CC---EeCCCEEEEEEeCHH
Confidence 99 999999999998654
No 360
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.48 E-value=2.6e-13 Score=109.34 Aligned_cols=73 Identities=15% Similarity=0.184 Sum_probs=66.1
Q ss_pred ceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCC-----cceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEee
Q 019152 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDA 337 (345)
Q Consensus 263 ~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~-----~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~ 337 (345)
++|||+|||.++++++|+++|++|| .|..|++.++ +|+|||+|.+.++|.+|+..+ +. .++|++|.|.|
T Consensus 110 ~~l~V~nLp~~~t~~~L~~~F~~~G--~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~---~~~Gr~l~V~~ 183 (193)
T 2voo_A 110 RSVYIKGFPTDATLDDIKEWLEDKG--QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQ---KYKETDLLILF 183 (193)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTSC--CEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TC---EETTEECEEEE
T ss_pred CEEEecCCCCcCCHHHHHHHHhcCC--CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CC---eECCEEEEEEE
Confidence 7899999999999999999999999 7899988753 799999999999999999765 45 79999999999
Q ss_pred cccc
Q 019152 338 MCGT 341 (345)
Q Consensus 338 ~~~~ 341 (345)
+++=
T Consensus 184 ~~~y 187 (193)
T 2voo_A 184 KDDY 187 (193)
T ss_dssp TTTC
T ss_pred hHHH
Confidence 8763
No 361
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=3e-13 Score=99.09 Aligned_cols=76 Identities=21% Similarity=0.277 Sum_probs=65.4
Q ss_pred CCcceEEEcCCCccc-----------CHHHHHHHhhhcCceeeEEEeeeC--CcceEEEEeCCHHHHHHHHHhhCCCCcc
Q 019152 260 PQYTTVYVGNLAPEV-----------TQLDLHRHFHSLGAGVIEEVRVQR--DKGFGFVRYSTHAEAALAIQMGNTTQSS 326 (345)
Q Consensus 260 ~~~~~l~V~nlp~~~-----------t~~~L~~~f~~~G~~~i~~v~i~~--~~~~afV~f~~~~~A~~Al~~l~~~~~~ 326 (345)
.++++|+|.||.... ++++|+++|++|| .|..|.+.. .+|+|||+|.+.++|.+|+..|||.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G--~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~--- 87 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFG--QIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGR--- 87 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTS--CCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTC---
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccC--CEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCC---
Confidence 355899999994432 2579999999999 788887642 4899999999999999999999999
Q ss_pred ccCCceEEEeeccc
Q 019152 327 YLFGKQMKHDAMCG 340 (345)
Q Consensus 327 ~~~g~~l~v~~~~~ 340 (345)
.++|++|+|.|+.+
T Consensus 88 ~~~gr~l~v~~a~~ 101 (112)
T 2dit_A 88 WFGGRQITAQAWDG 101 (112)
T ss_dssp EETTEECEEEECCS
T ss_pred EECCcEEEEEEeCC
Confidence 99999999999876
No 362
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.46 E-value=3.1e-13 Score=97.36 Aligned_cols=82 Identities=17% Similarity=0.160 Sum_probs=70.1
Q ss_pred CCceeEEECCC--CccCC--------HHHHHHHhccCCCcceeEeeecCCC--CCcccEEEEEeCCHHHHHHHHHHhCCc
Q 019152 139 SGHFNIFVGDL--SPEVT--------DATLFACFSVYPSCSDARVMWDQKT--GRSRGFGFVSFRNQQDAQSAINDLTGK 206 (345)
Q Consensus 139 ~~~~~l~v~~l--p~~~~--------~~~l~~~f~~~g~v~~~~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~ 206 (345)
.++++|.|.|+ |..+. +++|++.|++||.|.++.+++++.+ +.++|++||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35678899987 33332 3699999999999999999988654 367899999999999999999999999
Q ss_pred eeCCeeEEEEeccC
Q 019152 207 WLGSRQIRCNWATK 220 (345)
Q Consensus 207 ~~~~~~i~v~~~~~ 220 (345)
.+.||.|.|.|...
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999754
No 363
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.45 E-value=2.9e-13 Score=99.32 Aligned_cols=81 Identities=11% Similarity=0.249 Sum_probs=69.9
Q ss_pred CceeEEECCCCc--cC---CHHHHHHHhccCCCcceeEeeecCC----CCCcccEEEEEeCCHHHHHHHHHHhCCceeCC
Q 019152 140 GHFNIFVGDLSP--EV---TDATLFACFSVYPSCSDARVMWDQK----TGRSRGFGFVSFRNQQDAQSAINDLTGKWLGS 210 (345)
Q Consensus 140 ~~~~l~v~~lp~--~~---~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~ 210 (345)
++++|+|.|+-. ++ .+++|++.|++||.|.++.+.+++. ++.++|++||+|.+.++|.+|++.|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 457899999842 22 3689999999999999999998854 35678999999999999999999999999999
Q ss_pred eeEEEEeccC
Q 019152 211 RQIRCNWATK 220 (345)
Q Consensus 211 ~~i~v~~~~~ 220 (345)
|.|.|.|+..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999754
No 364
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.43 E-value=5.8e-13 Score=97.01 Aligned_cols=79 Identities=16% Similarity=0.189 Sum_probs=68.5
Q ss_pred CCCcceEEEeCCCCCCC----------HHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCC
Q 019152 53 PSTCRSVYVGNIHTQVT----------EPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQ 122 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t----------~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~ 122 (345)
+.+++.|.|.|+=.... ++||++.|++||.|.+|.+.++..+|+|||+|.+.++|.+|+..|||..+.|+
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 45678899999653221 46789999999999999998887789999999999999999999999999999
Q ss_pred ceEEeeccc
Q 019152 123 PIKVNWAYA 131 (345)
Q Consensus 123 ~l~v~~~~~ 131 (345)
.|.|.++..
T Consensus 84 ~i~v~~~~~ 92 (114)
T 3s6e_A 84 MITAAYVPL 92 (114)
T ss_dssp ECEEEEECH
T ss_pred EEEEEEEcH
Confidence 999999853
No 365
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.42 E-value=5.2e-13 Score=115.85 Aligned_cols=79 Identities=19% Similarity=0.248 Sum_probs=67.8
Q ss_pred CCCcceEEEcC--CCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCc--eEE
Q 019152 259 NPQYTTVYVGN--LAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGK--QMK 334 (345)
Q Consensus 259 ~~~~~~l~V~n--lp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~--~l~ 334 (345)
..++++|||+| |+.++|+++|+++|++|| .|..|.+.++||||||+|.+.++|.+|++.|||..+....|+ .|.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G--~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCG--LVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTS--CEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcC--CeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 34568999999 578899999999999999 889999999999999999999999999999999943223455 688
Q ss_pred Eeecc
Q 019152 335 HDAMC 339 (345)
Q Consensus 335 v~~~~ 339 (345)
|+|+.
T Consensus 93 ~~~~~ 97 (345)
T 3tht_A 93 LNFVE 97 (345)
T ss_dssp EEECS
T ss_pred EEEee
Confidence 88874
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.41 E-value=6.3e-13 Score=97.57 Aligned_cols=77 Identities=17% Similarity=0.199 Sum_probs=66.8
Q ss_pred CcceEEEeCCCC--CC---CHHHHHHHHhccCCceEEEEeecCC--------CCeEEEEEeCHHHHHHHHHHhCCCccCC
Q 019152 55 TCRSVYVGNIHT--QV---TEPLLQEVFSSTGPVEGCKLIRKDK--------SSYGFIHYFDRRSAAMAILSLNGRHLFG 121 (345)
Q Consensus 55 ~~~~l~v~~lp~--~~---t~~~l~~~f~~~G~v~~v~~~~~~~--------~~~afv~f~~~~~A~~a~~~l~~~~~~g 121 (345)
++++|+|.|+-. ++ -++||++.|++||.|.+|.+..++. +|++||+|.+.++|.+|+..|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 357899999842 22 3689999999999999999988743 3899999999999999999999999999
Q ss_pred CceEEeeccc
Q 019152 122 QPIKVNWAYA 131 (345)
Q Consensus 122 ~~l~v~~~~~ 131 (345)
+.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998854
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=5.3e-12 Score=89.61 Aligned_cols=76 Identities=16% Similarity=0.236 Sum_probs=64.0
Q ss_pred cceEEEeCCC-------CCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 56 CRSVYVGNIH-------TQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 56 ~~~l~v~~lp-------~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
.++|.|.-.. ..+++++|+++|++||.|.+|.++ .+.+|||||+|.+.++|..|+..++ .+.|+.|+|.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l~V~~ 86 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPLKISW 86 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBCEEEC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeEEEEE
Confidence 4567777554 458999999999999999999988 4667999999999999999998754 46799999999
Q ss_pred ccccCC
Q 019152 129 AYASGQ 134 (345)
Q Consensus 129 ~~~~~~ 134 (345)
+.++..
T Consensus 87 a~~~~~ 92 (100)
T 2d9o_A 87 LEGQPQ 92 (100)
T ss_dssp SSCCCC
T ss_pred ccCCCC
Confidence 977654
No 368
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.39 E-value=1.9e-13 Score=98.30 Aligned_cols=72 Identities=22% Similarity=0.426 Sum_probs=63.0
Q ss_pred ECCCCccCCHHHHHHHh------------ccCCCcceeEeeecCCCCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeE
Q 019152 146 VGDLSPEVTDATLFACF------------SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQI 213 (345)
Q Consensus 146 v~~lp~~~~~~~l~~~f------------~~~g~v~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i 213 (345)
+.||+..+++++|++.| ++||.|.++.+.++. ++.++|||||+|.+.++|.+|+..|+|..+.|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45677777777666655 999999999999874 47899999999999999999999999999999999
Q ss_pred EEEec
Q 019152 214 RCNWA 218 (345)
Q Consensus 214 ~v~~~ 218 (345)
.|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 369
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.38 E-value=1.5e-12 Score=94.89 Aligned_cols=76 Identities=14% Similarity=0.162 Sum_probs=65.8
Q ss_pred CcceEEEcCCCccc----------CHHHHHHHhhhcCceeeEEEeeeCC--cceEEEEeCCHHHHHHHHHhhCCCCcccc
Q 019152 261 QYTTVYVGNLAPEV----------TQLDLHRHFHSLGAGVIEEVRVQRD--KGFGFVRYSTHAEAALAIQMGNTTQSSYL 328 (345)
Q Consensus 261 ~~~~l~V~nlp~~~----------t~~~L~~~f~~~G~~~i~~v~i~~~--~~~afV~f~~~~~A~~Al~~l~~~~~~~~ 328 (345)
++++|.|.|+=..- .+++|++.|++|| .|.+|.+.++ +|+|||+|.+.++|.+|++.|||+ .|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG--~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~---~f 80 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHG--GVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGR---WF 80 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTT--CCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTC---EE
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccC--CEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCC---EE
Confidence 45789999984321 2468899999999 7899999876 799999999999999999999999 99
Q ss_pred CCceEEEeecccc
Q 019152 329 FGKQMKHDAMCGT 341 (345)
Q Consensus 329 ~g~~l~v~~~~~~ 341 (345)
+||.|+|+|+..+
T Consensus 81 ~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 81 AGKMITAAYVPLP 93 (114)
T ss_dssp TTEECEEEEECHH
T ss_pred CCEEEEEEEEcHH
Confidence 9999999998654
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.35 E-value=1.7e-12 Score=112.72 Aligned_cols=76 Identities=24% Similarity=0.394 Sum_probs=65.6
Q ss_pred CCCcceEEEeC--CCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccC---CC--ceE
Q 019152 53 PSTCRSVYVGN--IHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLF---GQ--PIK 125 (345)
Q Consensus 53 ~~~~~~l~v~~--lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~---g~--~l~ 125 (345)
..++++|||+| |+..+||++|+++|++||.|.+|.+.. ++|||||+|.+.++|.+|++.|||..+. |+ .+.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 45668899999 578999999999999999999987754 5689999999999999999999999884 44 577
Q ss_pred Eeecc
Q 019152 126 VNWAY 130 (345)
Q Consensus 126 v~~~~ 130 (345)
+.|..
T Consensus 93 ~~~~~ 97 (345)
T 3tht_A 93 LNFVE 97 (345)
T ss_dssp EEECS
T ss_pred EEEee
Confidence 77774
No 371
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.3e-11 Score=87.54 Aligned_cols=72 Identities=18% Similarity=0.182 Sum_probs=60.7
Q ss_pred ceEEEcCCC-------cccCHHHHHHHhhhcCceeeEEEeee-CCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEE
Q 019152 263 TTVYVGNLA-------PEVTQLDLHRHFHSLGAGVIEEVRVQ-RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMK 334 (345)
Q Consensus 263 ~~l~V~nlp-------~~~t~~~L~~~f~~~G~~~i~~v~i~-~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~ 334 (345)
..|.|.-.. ..+++++|+++|++|| .|..|.+. +.+|+|||+|.+.++|.+|++.++ .+.|++|+
T Consensus 11 ~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G--~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~-----~~~g~~l~ 83 (100)
T 2d9o_A 11 PKLKLKWKCKKEDESKGGYSKDVLLRLLQKYG--EVLNLVLSSKKPGTAVVEFATVKAAELAVQNEV-----GLVDNPLK 83 (100)
T ss_dssp CEEEEECCCCSSCSCCCSCCHHHHHHHHHTTS--CEEEEEEESSSSSEEEEEESCHHHHHHHHHTCC-----BCSSSBCE
T ss_pred ceEEEeeeccCccCcCCCCCHHHHHHHHHhcC--CEEEEEEccCCCCEEEEEECCHHHHHHHHHhcC-----CCCCCeEE
Confidence 456665543 4589999999999999 79999887 568999999999999999998754 46799999
Q ss_pred Eeecccc
Q 019152 335 HDAMCGT 341 (345)
Q Consensus 335 v~~~~~~ 341 (345)
|.|++..
T Consensus 84 V~~a~~~ 90 (100)
T 2d9o_A 84 ISWLEGQ 90 (100)
T ss_dssp EECSSCC
T ss_pred EEEccCC
Confidence 9999864
No 372
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.34 E-value=7.2e-13 Score=95.31 Aligned_cols=68 Identities=19% Similarity=0.388 Sum_probs=58.3
Q ss_pred EcCCCcccCHHHHHHHh------------hhcCceeeEEEeeeCC-----cceEEEEeCCHHHHHHHHHhhCCCCccccC
Q 019152 267 VGNLAPEVTQLDLHRHF------------HSLGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTTQSSYLF 329 (345)
Q Consensus 267 V~nlp~~~t~~~L~~~f------------~~~G~~~i~~v~i~~~-----~~~afV~f~~~~~A~~Al~~l~~~~~~~~~ 329 (345)
+.+||..+++++|++.| ++|| .|.+|.+.++ +|+|||+|.+.++|.+|+..|||+ .++
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G--~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~---~~~ 94 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYG--EVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNR---WFN 94 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--CEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTC---EET
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCC--ceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCC---EEC
Confidence 45666677777666555 9999 8999999864 799999999999999999999999 999
Q ss_pred CceEEEeecc
Q 019152 330 GKQMKHDAMC 339 (345)
Q Consensus 330 g~~l~v~~~~ 339 (345)
||+|+|.|+.
T Consensus 95 Gr~i~v~~sp 104 (104)
T 1jmt_A 95 GQPIHAELSP 104 (104)
T ss_dssp TEECCEEECC
T ss_pred CEEEEEEEcC
Confidence 9999999973
No 373
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=4.4e-11 Score=86.99 Aligned_cols=80 Identities=16% Similarity=0.124 Sum_probs=70.0
Q ss_pred CCCCCcceEEEcCCCcc-cCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCC-HHHHHHHHHhhCCCCccccCCceEE
Q 019152 257 ENNPQYTTVYVGNLAPE-VTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYST-HAEAALAIQMGNTTQSSYLFGKQMK 334 (345)
Q Consensus 257 ~~~~~~~~l~V~nlp~~-~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~-~~~A~~Al~~l~~~~~~~~~g~~l~ 334 (345)
...++++.|+|+||+.. ++.++|+++|++|| .|.+|.+.++...|||+|.+ ..+|..|+..|+.-.+ .|.|..++
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G--~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~-~i~g~~~~ 89 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHG--EIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNL-QLRNKEVT 89 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSC--CEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCB-CTTSSSEE
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcC--CEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCc-EEeCcEEE
Confidence 44567799999999999 99999999999999 89999999999999999999 8999999999963322 79999888
Q ss_pred Eeecc
Q 019152 335 HDAMC 339 (345)
Q Consensus 335 v~~~~ 339 (345)
++...
T Consensus 90 ~evL~ 94 (121)
T 1owx_A 90 WEVLE 94 (121)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 87654
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=4.8e-11 Score=81.11 Aligned_cols=76 Identities=18% Similarity=0.169 Sum_probs=64.2
Q ss_pred CCCcceEEEcCCCc----ccCH----HHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCC
Q 019152 259 NPQYTTVYVGNLAP----EVTQ----LDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFG 330 (345)
Q Consensus 259 ~~~~~~l~V~nlp~----~~t~----~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g 330 (345)
+|+..||+|...+. +.-+ .+|.+.|.+|| .|..+++..++ +||+|.+.++|.+|++ |||. .++|
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G--~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~---~v~G 75 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFG--EVILIRFVEDK--MWVTFLEGSSALNVLS-LNGK---ELLN 75 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTC--CEEEEEECSSS--EEEEESSHHHHHHGGG-GTTC---EETT
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCC--CeEEEEEecCC--EEEEECChHHHHHHHh-cCCe---EeCC
Confidence 45667898887662 3334 57889999999 89999999875 8999999999999998 9999 9999
Q ss_pred ceEEEeeccccc
Q 019152 331 KQMKHDAMCGTL 342 (345)
Q Consensus 331 ~~l~v~~~~~~~ 342 (345)
|+|+|.+++..-
T Consensus 76 r~LkV~lkt~dW 87 (91)
T 2dnr_A 76 RTITIALKSPSG 87 (91)
T ss_dssp EEEEEEECCCSS
T ss_pred eEEEEEeCCCCc
Confidence 999999988653
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=2.2e-10 Score=83.34 Aligned_cols=73 Identities=15% Similarity=0.123 Sum_probs=65.2
Q ss_pred CcceEEEeCCCCC-CCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeC-HHHHHHHHHHhC--CCccCCCceEEeec
Q 019152 55 TCRSVYVGNIHTQ-VTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFD-RRSAAMAILSLN--GRHLFGQPIKVNWA 129 (345)
Q Consensus 55 ~~~~l~v~~lp~~-~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~-~~~A~~a~~~l~--~~~~~g~~l~v~~~ 129 (345)
..+.|+|+||+.+ +++++|+++|+.||.|..|.+..+.. .|||.|.+ ..+|..|+..++ +..|.|..+++...
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 3478999999999 99999999999999999999988877 69999999 899999999984 78888888887654
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=4.5e-10 Score=76.30 Aligned_cols=72 Identities=22% Similarity=0.344 Sum_probs=61.5
Q ss_pred ceEEEeCCC----CCCCH----HHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 57 RSVYVGNIH----TQVTE----PLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 57 ~~l~v~~lp----~~~t~----~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
-||+|.-++ ..+-. .+|.+.|+.||.|..+++..++ +||+|.+.++|.+|+. |||..+.|+.|+|+.
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~l 82 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELLNRTITIAL 82 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEETTEEEEEEE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeCCeEEEEEe
Confidence 568877766 23333 6789999999999999998876 9999999999999997 999999999999999
Q ss_pred ccccC
Q 019152 129 AYASG 133 (345)
Q Consensus 129 ~~~~~ 133 (345)
+.+..
T Consensus 83 kt~dW 87 (91)
T 2dnr_A 83 KSPSG 87 (91)
T ss_dssp CCCSS
T ss_pred CCCCc
Confidence 87654
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=2.4e-10 Score=78.00 Aligned_cols=74 Identities=20% Similarity=0.255 Sum_probs=62.7
Q ss_pred CCCCcceEEEcCCCcc-----cCH----HHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCcccc
Q 019152 258 NNPQYTTVYVGNLAPE-----VTQ----LDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYL 328 (345)
Q Consensus 258 ~~~~~~~l~V~nlp~~-----~t~----~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~ 328 (345)
.+|+..||+|..++.+ ..+ .+|.+.|..|| .+..+++..++ +||+|.+.++|.+|++ |+|. .+
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G--~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~---~v 82 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYG--TIVLVRINQGQ--MLVTFADSHSALSVLD-VDGM---KV 82 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHS--CCSEEEEETTE--EEEECSCSHHHHHHHH-GGGS---EE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCC--CEEEEEEecCc--EEEEEcChHHHHHHHh-cCCe---ee
Confidence 4566689999888632 333 56889999999 88899999886 9999999999999998 9999 99
Q ss_pred CCceEEEeecc
Q 019152 329 FGKQMKHDAMC 339 (345)
Q Consensus 329 ~g~~l~v~~~~ 339 (345)
+||.|+|++-.
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999999843
No 378
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.92 E-value=7.7e-09 Score=71.84 Aligned_cols=70 Identities=14% Similarity=0.130 Sum_probs=67.0
Q ss_pred ceEEEcCCCcccCHHHHHHHhhhc-----CceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEee
Q 019152 263 TTVYVGNLAPEVTQLDLHRHFHSL-----GAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDA 337 (345)
Q Consensus 263 ~~l~V~nlp~~~t~~~L~~~f~~~-----G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~ 337 (345)
++|-|-|||+.+++..|+.+.+++ | .+..|.+.++.+.|+|+|.+...|.+|.-.|+|. .|.||+|++.=
T Consensus 22 rtiaL~~ipDtvndarIr~lve~~~~i~~g--~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~---ef~gr~Lr~gT 96 (117)
T 2l9w_A 22 TLICLFPLSDKVSPSLICQFLQEEIHINEK--DIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGS---QFQGKVIRSGT 96 (117)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHTCCCTT--TCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSE---EETTEEEEEEC
T ss_pred cEEEEecCCCCCCHHHHHHHHhhhhccCcc--ceeEEEEecCCCceEEEEccchhhHHHHhhcCCe---eecCeEEEecC
Confidence 789999999999999999999999 9 7999999999999999999999999999999999 99999999864
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=3.2e-09 Score=72.48 Aligned_cols=70 Identities=16% Similarity=0.181 Sum_probs=60.0
Q ss_pred cceEEEeCCCCC-----CCH----HHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEE
Q 019152 56 CRSVYVGNIHTQ-----VTE----PLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKV 126 (345)
Q Consensus 56 ~~~l~v~~lp~~-----~t~----~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v 126 (345)
.-||+|.-++.+ +-. .+|.+.|..||.|..+++..++ +||+|.+.++|.+|+. |||..+.|+.|+|
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V 89 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVKGRAVKI 89 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEETTEEEEE
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeCCeEEEE
Confidence 357999887642 323 5688999999999999998887 9999999999999997 9999999999999
Q ss_pred eecc
Q 019152 127 NWAY 130 (345)
Q Consensus 127 ~~~~ 130 (345)
++-.
T Consensus 90 ~~k~ 93 (95)
T 1ufw_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred eccC
Confidence 8754
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.81 E-value=1e-08 Score=84.53 Aligned_cols=68 Identities=13% Similarity=0.247 Sum_probs=60.6
Q ss_pred CCHHHHHHHhccCCCcceeEeeecCC----CCCcccEEEEEeCCHHHHHHHHHHhCCceeCCeeEEEEeccC
Q 019152 153 VTDATLFACFSVYPSCSDARVMWDQK----TGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 220 (345)
Q Consensus 153 ~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~~~~i~v~~~~~ 220 (345)
-.+++|++.|++||.|.++.+.++.. ++.++|++||+|.+.++|.+|+..|+|+.+.||.|.+.|...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 35679999999999999999986643 348999999999999999999999999999999999999753
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.75 E-value=1.4e-08 Score=83.74 Aligned_cols=62 Identities=18% Similarity=0.192 Sum_probs=56.1
Q ss_pred CHHHHHHHhhhcCceeeEEEeee----------CCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeecccc
Q 019152 275 TQLDLHRHFHSLGAGVIEEVRVQ----------RDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMCGT 341 (345)
Q Consensus 275 t~~~L~~~f~~~G~~~i~~v~i~----------~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~~~ 341 (345)
.+++|++.|++|| .|..+.+. +.+|++||+|.+.++|.+|+..|||+ .++||.|.++|...+
T Consensus 142 ~~~dl~~e~~~~G--~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr---~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 142 LEGEVTEECGKFG--AVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGR---WFAGRKVVAEVYDQE 213 (222)
T ss_dssp HHHHHHHHHTTTS--CEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTC---BSSSSBCEEEECCHH
T ss_pred HHHHHHHHHHccC--CeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCc---eECCeEEEEEEcCHH
Confidence 4678999999999 89999886 34689999999999999999999999 999999999998654
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.66 E-value=1.3e-07 Score=65.80 Aligned_cols=72 Identities=17% Similarity=0.215 Sum_probs=66.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHhcc-----CCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 55 TCRSVYVGNIHTQVTEPLLQEVFSST-----GPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 55 ~~~~l~v~~lp~~~t~~~l~~~f~~~-----G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
..++|-+-|||..++...|+.+.++| |.+..|.+..|-. -|+|+|.+...|.+|...|+|..|.|++|++.-
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~--GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN--GAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT--EEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC--ceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 46889999999999999999999999 9999998887764 599999999999999999999999999999863
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.59 E-value=1e-06 Score=60.90 Aligned_cols=89 Identities=19% Similarity=0.285 Sum_probs=73.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHhc---c--CCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEee
Q 019152 54 STCRSVYVGNIHTQVTEPLLQEVFSS---T--GPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNW 128 (345)
Q Consensus 54 ~~~~~l~v~~lp~~~t~~~l~~~f~~---~--G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 128 (345)
+..++|.|.|||+.++++.|.-+|++ - |+|.+++... +-|+|.|.+.+.|.+.++. ....|.+..|.|.+
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRP 80 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEc
Confidence 34578999999999999999999987 2 4888888755 4699999999999999853 46788899999988
Q ss_pred ccccCCCCCCCCceeEEECCCCccCC
Q 019152 129 AYASGQREDTSGHFNIFVGDLSPEVT 154 (345)
Q Consensus 129 ~~~~~~~~~~~~~~~l~v~~lp~~~~ 154 (345)
+.+.. ..+|++.+|++.++
T Consensus 81 ~~~~~-------~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 81 APPRA-------PARLLLQGLPPGTS 99 (104)
T ss_dssp CCCCC-------CCCCCCCSCCCCCC
T ss_pred CCCCC-------cceEeeecCCCCCC
Confidence 76554 25899999998765
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.37 E-value=1.6e-06 Score=60.24 Aligned_cols=75 Identities=15% Similarity=0.031 Sum_probs=66.0
Q ss_pred ceEEEcCCCccc-CH----HHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEee
Q 019152 263 TTVYVGNLAPEV-TQ----LDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDA 337 (345)
Q Consensus 263 ~~l~V~nlp~~~-t~----~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~ 337 (345)
++|+|.||+..+ .. +.++++|..|+ ........++=....|.|.+.++|.+|...||+. .+.|+.++|-|
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~--~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~---~f~g~~~r~YF 80 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYD--KDTTFQYFKSFKRVRINFSNPLSAADARLRLHKT---EFLGKEMKLYF 80 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTC--SSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTS---EETTEECEEEC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhC--cCcceeecCcceEEEEEeCChHHHHHHHHHhccc---eecCceeEEEe
Confidence 689999998876 32 56789999998 7788888888778999999999999999999999 99999999999
Q ss_pred ccccc
Q 019152 338 MCGTL 342 (345)
Q Consensus 338 ~~~~~ 342 (345)
+..+.
T Consensus 81 gq~~~ 85 (104)
T 1wey_A 81 AQTLH 85 (104)
T ss_dssp CCCSS
T ss_pred cCCCC
Confidence 98654
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=1.7e-05 Score=54.79 Aligned_cols=72 Identities=21% Similarity=0.203 Sum_probs=60.9
Q ss_pred ceEEEcCCCcccCHHHHHHHhhh---cCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeecc
Q 019152 263 TTVYVGNLAPEVTQLDLHRHFHS---LGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAMC 339 (345)
Q Consensus 263 ~~l~V~nlp~~~t~~~L~~~f~~---~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~~ 339 (345)
++|.|.|||+.+.++.|.-+|++ -|...+..+.... +.|+|+|.+.+.|.+.|+.- .+ .+.|..|.|.-..
T Consensus 9 ~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k~-~H---~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 9 VAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQA-DH---ELHGAQLSLRPAP 82 (104)
T ss_dssp CEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTCS-CC---BSSSSBCEEEECC
T ss_pred cEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcCC-cc---eecCeEEEEEcCC
Confidence 78999999999999999999997 4667999999987 79999999999999998642 33 6888899885443
Q ss_pred c
Q 019152 340 G 340 (345)
Q Consensus 340 ~ 340 (345)
.
T Consensus 83 ~ 83 (104)
T 2dhx_A 83 P 83 (104)
T ss_dssp C
T ss_pred C
Confidence 3
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.07 E-value=2.2e-05 Score=53.45 Aligned_cols=60 Identities=15% Similarity=0.228 Sum_probs=49.3
Q ss_pred CCCCCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHh
Q 019152 50 GFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSL 114 (345)
Q Consensus 50 ~~~~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l 114 (345)
...+.....++| ++|..+...||.++|+.||.| .|+-+.|. .|||.|.+++.|..|+..+
T Consensus 10 d~~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT---sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 10 DLQPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT---EEEEECSCHHHHHHHHHHH
T ss_pred CCCCCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC---eEEEEecCHHHHHHHHHhc
Confidence 334566677777 999999999999999999976 45555555 5999999999999999876
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.03 E-value=1.3e-05 Score=55.65 Aligned_cols=74 Identities=19% Similarity=0.222 Sum_probs=63.2
Q ss_pred cceEEEeCCCCCC-CH----HHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeecc
Q 019152 56 CRSVYVGNIHTQV-TE----PLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWAY 130 (345)
Q Consensus 56 ~~~l~v~~lp~~~-t~----~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 130 (345)
+.+|+|+||+.++ .. +.++++|..|+++......+.-. -..|.|.++++|.+|...|++..+.|+.++|-++.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR--Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq 82 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK--RVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQ 82 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT--EEEEECSSTTHHHHHHHTSTTSEETTEECEEECCC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce--EEEEEeCChHHHHHHHHHhccceecCceeEEEecC
Confidence 4679999999865 22 56789999999998877776544 58999999999999999999999999999999986
Q ss_pred c
Q 019152 131 A 131 (345)
Q Consensus 131 ~ 131 (345)
+
T Consensus 83 ~ 83 (104)
T 1wey_A 83 T 83 (104)
T ss_dssp C
T ss_pred C
Confidence 3
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.82 E-value=8.1e-05 Score=50.87 Aligned_cols=65 Identities=12% Similarity=0.215 Sum_probs=54.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCC------CCeEEEEEeCHHHHHHHHHHhCCCccCC
Q 019152 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDK------SSYGFIHYFDRRSAAMAILSLNGRHLFG 121 (345)
Q Consensus 57 ~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~------~~~afv~f~~~~~A~~a~~~l~~~~~~g 121 (345)
++|.|++||+.+||+++.+.+..+..+.....+..+. ..-|||.|.+.+++....+.++|..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 4689999999999999999999998876666655432 2579999999999999999999988754
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.65 E-value=0.00052 Score=46.78 Aligned_cols=54 Identities=20% Similarity=0.264 Sum_probs=46.5
Q ss_pred ceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhC
Q 019152 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN 321 (345)
Q Consensus 263 ~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~ 321 (345)
..++| ++|..+...||.++|+.||.+.|..|. -..|||.|.+.+.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wid----DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID----DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEE----TTEEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEEEEEEc----CCeEEEEecCHHHHHHHHHhcc
Confidence 56777 999999999999999999966666654 4689999999999999998774
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.54 E-value=0.00089 Score=45.68 Aligned_cols=68 Identities=15% Similarity=0.207 Sum_probs=55.3
Q ss_pred eeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCC--CcccEEEEEeCCHHHHHHHHHHhCCceeC
Q 019152 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTG--RSRGFGFVSFRNQQDAQSAINDLTGKWLG 209 (345)
Q Consensus 142 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~--~~~g~~fv~f~~~~~a~~a~~~l~~~~~~ 209 (345)
++|.|++||++++++++.+.+...+.+........+.+. ...+-|||.|.+.+++....+.++|..|-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 478999999999999999999998877766665443222 23356999999999999999999998873
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.53 E-value=0.00052 Score=49.10 Aligned_cols=74 Identities=16% Similarity=0.087 Sum_probs=59.6
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCC-CceEEeecc
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFG-QPIKVNWAY 130 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g-~~l~v~~~~ 130 (345)
....+-|.|.|.|+.. ...|...|+.||.|.+... ....++-.|.|.+..+|.+||. .||..+.| -.|-|.+..
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 3446779999999985 7889999999999987765 4455799999999999999995 59998875 456666654
No 392
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.50 E-value=0.00017 Score=49.36 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=45.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhC
Q 019152 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLN 115 (345)
Q Consensus 57 ~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~ 115 (345)
..++| ++|..+...||.++|+.||.| .|.-+.|. .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT---sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT---EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 44556 999999999999999999965 55555555 59999999999999998764
No 393
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.34 E-value=0.0016 Score=46.54 Aligned_cols=68 Identities=15% Similarity=0.107 Sum_probs=56.2
Q ss_pred ceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCC-ceEEEee
Q 019152 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFG-KQMKHDA 337 (345)
Q Consensus 263 ~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g-~~l~v~~ 337 (345)
+-|.|.+.|... ...|...|++|| .|.+........+..|.|.+..+|.+||. .||. .++| --|-|.+
T Consensus 25 ~wVtVFGFp~~~-~~~VL~~F~~~G--~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~-kNG~---ii~g~~mIGV~p 93 (119)
T 1wwh_A 25 TWVTVFGFPQAS-ASYILLQFAQYG--NILKHVMSNTGNWMHIRYQSKLQARKALS-KDGR---IFGESIMIGVKP 93 (119)
T ss_dssp GEEEEECCCGGG-HHHHHHHHHTTS--CEEEEEECSSSSEEEEEESSHHHHHHHHT-TTTC---EETTTEECEEEE
T ss_pred CEEEEECCCHHH-HHHHHHHHHhhC--cEEEeccCCCCCeEEEEeCCHHHHHHHHH-hCCe---EecCCEEEEEEE
Confidence 679999999986 566889999999 78888887678899999999999999995 5998 7764 4455554
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.21 E-value=0.00033 Score=47.93 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=45.6
Q ss_pred ceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhC
Q 019152 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN 321 (345)
Q Consensus 263 ~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~ 321 (345)
..++| ++|..+...||.++|+.||.+.|..|. -..|||.|.+.+.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~Wid----DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID----DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEE----TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEEEc----CCeEEEEecCHHHHHHHHHhcc
Confidence 46777 999999999999999999855555543 4689999999999999998774
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.18 E-value=0.00036 Score=47.92 Aligned_cols=66 Identities=12% Similarity=0.168 Sum_probs=50.3
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecC------CCCeEEEEEeCHHHHHHHHHHhCCCccCC
Q 019152 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKD------KSSYGFIHYFDRRSAAMAILSLNGRHLFG 121 (345)
Q Consensus 56 ~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~------~~~~afv~f~~~~~A~~a~~~l~~~~~~g 121 (345)
+..|.|+.||+.+||+++.+.+..+-.+.....+..+ .-.-|||.|.+.++.....+..+|..+.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 4679999999999999998888876554322222211 12469999999999999999999988754
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.93 E-value=0.0038 Score=42.85 Aligned_cols=67 Identities=15% Similarity=0.186 Sum_probs=50.5
Q ss_pred eeEEECCCCccCCHHHHHHHhccCCCcceeEeeecCCCC--CcccEEEEEeCCHHHHHHHHHHhCCcee
Q 019152 142 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTG--RSRGFGFVSFRNQQDAQSAINDLTGKWL 208 (345)
Q Consensus 142 ~~l~v~~lp~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~--~~~g~~fv~f~~~~~a~~a~~~l~~~~~ 208 (345)
-+|.|+.||+++|++++.+.++..-.+........+.+. ..-..|||.|.+.++.....+.++|..|
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 479999999999999999988876555443333221111 1224589999999999999999999877
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.90 E-value=0.0009 Score=48.51 Aligned_cols=72 Identities=21% Similarity=0.187 Sum_probs=55.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhccCCceE-EEEee------------c-----CCCCeEEEEEeCHHHHHHHHHHhCCCc
Q 019152 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEG-CKLIR------------K-----DKSSYGFIHYFDRRSAAMAILSLNGRH 118 (345)
Q Consensus 57 ~~l~v~~lp~~~t~~~l~~~f~~~G~v~~-v~~~~------------~-----~~~~~afv~f~~~~~A~~a~~~l~~~~ 118 (345)
.-|.|-|.|++. ...+.+.|++||.|.+ +...+ . ...++..|.|.+..+|.+||. .||..
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 458888997765 6788999999998865 21111 0 024688999999999999995 69999
Q ss_pred cCCCceEEeecc
Q 019152 119 LFGQPIKVNWAY 130 (345)
Q Consensus 119 ~~g~~l~v~~~~ 130 (345)
|.|..|-|.+..
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999877777764
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.74 E-value=0.00092 Score=60.09 Aligned_cols=55 Identities=15% Similarity=0.236 Sum_probs=42.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHH
Q 019152 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAIL 112 (345)
Q Consensus 56 ~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~ 112 (345)
.|+|+|. .|..+++.+|.++|+.||+|.++.+.+++. -||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-LYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-EEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-eEEEEEeCCHHHHHHHHh
Confidence 5679998 799999999999999999999998876543 699999999999987763
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.44 E-value=0.0074 Score=43.76 Aligned_cols=70 Identities=19% Similarity=0.199 Sum_probs=52.4
Q ss_pred ceEEEcCCCcccCHHHHHHHhhhcCceeeEE-EeeeC-------------------CcceEEEEeCCHHHHHHHHHhhCC
Q 019152 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEE-VRVQR-------------------DKGFGFVRYSTHAEAALAIQMGNT 322 (345)
Q Consensus 263 ~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~-v~i~~-------------------~~~~afV~f~~~~~A~~Al~~l~~ 322 (345)
.-|.|.+.|...+ ..+.+.|++|| .|.+ +...+ ...+..|+|++..+|.+||. -||
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G--~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFG--TILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGS--CBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhc--eEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 4588889988764 55778999999 4544 32211 35678999999999999995 699
Q ss_pred CCccccCCceEEEeecc
Q 019152 323 TQSSYLFGKQMKHDAMC 339 (345)
Q Consensus 323 ~~~~~~~g~~l~v~~~~ 339 (345)
. .|+|.-|-|.+..
T Consensus 84 ~---ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 A---VFNGVLLGVIPYT 97 (132)
T ss_dssp C---EETTEECEEEECC
T ss_pred e---EeCcEEEEEEECC
Confidence 9 8999877776543
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.29 E-value=0.011 Score=53.22 Aligned_cols=54 Identities=11% Similarity=0.190 Sum_probs=41.7
Q ss_pred ceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcc-eEEEEeCCHHHHHHHHHh
Q 019152 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKG-FGFVRYSTHAEAALAIQM 319 (345)
Q Consensus 263 ~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~-~afV~f~~~~~A~~Al~~ 319 (345)
++|+|. .|..+++.+|.++|+.|| .|..+.+.+++| +|.|+|.+.+++..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g--~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFG--PINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGS--CCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcC--CcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 689996 799999999999999999 799998888755 899999999999877643
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=94.01 E-value=0.17 Score=46.38 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=46.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCC
Q 019152 53 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNG 116 (345)
Q Consensus 53 ~~~~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~ 116 (345)
+..+..++|+ +|..+...+|.+.|+.||.+ +|..+.+. .|||.|.+.+.|..++.+++.
T Consensus 437 ~~R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt---~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 437 PKRDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp CCGGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS---EEEEECSCHHHHHHHHHHHTT
T ss_pred CCcCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC---eEEEEECCHHHHHHHHHHHHh
Confidence 3445666676 99999999999999999976 45444343 599999999999999988753
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=85.85 E-value=3.6 Score=37.63 Aligned_cols=57 Identities=19% Similarity=0.248 Sum_probs=45.7
Q ss_pred cceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCC
Q 019152 262 YTTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTT 323 (345)
Q Consensus 262 ~~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~ 323 (345)
...++|+ +|..+...+|.+.|+.||. .+|+.. +..+|||.|.+.+.|..+++.++..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~---v~V~wi-ddt~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN---IQISWI-DDTSAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC---CEEEEC-SSSEEEEECSCHHHHHHHHHHHTTC
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC---EEEEEE-cCCeEEEEECCHHHHHHHHHHHHhC
Confidence 3567776 8999999999999999993 334433 3568999999999999999988654
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=75.77 E-value=8.1 Score=24.71 Aligned_cols=69 Identities=16% Similarity=0.255 Sum_probs=43.2
Q ss_pred eEEEcCCCc--ccCHHHHHHHhhhcC---ceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCCCCccccCCceEEEeec
Q 019152 264 TVYVGNLAP--EVTQLDLHRHFHSLG---AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTTQSSYLFGKQMKHDAM 338 (345)
Q Consensus 264 ~l~V~nlp~--~~t~~~L~~~f~~~G---~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~~~~~~~~g~~l~v~~~ 338 (345)
+++| ++.. .++..+|..++..-+ ...|-.|.+... +.||+-.. +.|..++..|++. .+.|+++.++.+
T Consensus 2 ~~~i-~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--~s~v~v~~-~~~~~~~~~l~~~---~i~g~~~~v~~~ 74 (76)
T 2g0c_A 2 KLYF-NGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--ASYVEILN-GKGPHVLKVMKNT---TVKGKQLKVNKA 74 (76)
T ss_dssp EEEE-SCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--CEEEEECT-TCHHHHHHHHTTC---CC---CCCEEEC
T ss_pred EEEE-eCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--cEEEEECH-HHHHHHHHHhccc---cCcCceEEEEEC
Confidence 4555 3333 567788887777444 234555666544 88888864 5677888899998 899999999876
Q ss_pred c
Q 019152 339 C 339 (345)
Q Consensus 339 ~ 339 (345)
+
T Consensus 75 ~ 75 (76)
T 2g0c_A 75 N 75 (76)
T ss_dssp C
T ss_pred C
Confidence 5
No 404
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=71.23 E-value=0.87 Score=38.27 Aligned_cols=18 Identities=50% Similarity=0.639 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHHHH
Q 019152 1 MQHQRLKQQQQQQQQALM 18 (345)
Q Consensus 1 ~q~q~~~qqqqqqqq~~~ 18 (345)
|-||+|.|+|+|.||+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (283)
T 3ipq_A 1 MKHQHQHQHQHQHQQPLQ 18 (283)
T ss_dssp ------------------
T ss_pred CcchhHHHHHHhhhcccc
Confidence 334444444444444433
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=64.84 E-value=27 Score=23.00 Aligned_cols=56 Identities=18% Similarity=0.162 Sum_probs=44.5
Q ss_pred ceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHhhCC
Q 019152 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNT 322 (345)
Q Consensus 263 ~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~l~~ 322 (345)
+-|.|-|+|..+-..++.-.....| .--.+... .|.|.+.|.+.++-..|+..|-+
T Consensus 13 clikiinipqgtlkaevvlavrhlg--yefycdyi--dgqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 13 CLIKIINIPQGTLKAEVVLAVRHLG--YEFYCDYI--DGQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTC--CCEEEEEC--SSCEEEEESSHHHHHHHHHHHEE
T ss_pred cEEEEEecCCCceeeeeEEeehhcC--eeEeeeee--cCeeEEEecCChHHHHHHHHHHh
Confidence 6788999999998888877777777 33444444 57899999999999999987743
No 406
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=52.85 E-value=24 Score=22.36 Aligned_cols=67 Identities=9% Similarity=0.194 Sum_probs=41.0
Q ss_pred eEEEeCCC-CCCCHHHHHHHHhccCC-----ceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCCCceEEeec
Q 019152 58 SVYVGNIH-TQVTEPLLQEVFSSTGP-----VEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFGQPIKVNWA 129 (345)
Q Consensus 58 ~l~v~~lp-~~~t~~~l~~~f~~~G~-----v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 129 (345)
+++|..=- ..+...+|..++..-+. |-.|.+.. .+.||+-... .|..++..|++..+.|+.+++..+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d----~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD----NASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS----SCEEEEECTT-CHHHHHHHHTTCCC---CCCEEEC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC----CcEEEEECHH-HHHHHHHHhccccCcCceEEEEEC
Confidence 35554222 34677888888776553 33444422 3789988665 578889999999999999998765
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=50.37 E-value=30 Score=26.28 Aligned_cols=54 Identities=9% Similarity=0.141 Sum_probs=34.0
Q ss_pred eEEEcCCCc-c--------cCHHHHHHHh--hhcCceeeEEEeeeCC-cceEEEEeCCH-HHHHHHH
Q 019152 264 TVYVGNLAP-E--------VTQLDLHRHF--HSLGAGVIEEVRVQRD-KGFGFVRYSTH-AEAALAI 317 (345)
Q Consensus 264 ~l~V~nlp~-~--------~t~~~L~~~f--~~~G~~~i~~v~i~~~-~~~afV~f~~~-~~A~~Al 317 (345)
+.+|-|+|. . .+..+|++.| ..|.+..+..+--... +|+|.|.|.+. ..-..|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHH
Confidence 567778887 2 3457899977 8887544333333333 68899999765 3334444
No 408
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=36.72 E-value=69 Score=24.31 Aligned_cols=49 Identities=14% Similarity=0.204 Sum_probs=34.7
Q ss_pred eEEEeCCCC-C--------CCHHHHHHHH--hccCCceEEEEeecC--CCCeEEEEEeCHHHH
Q 019152 58 SVYVGNIHT-Q--------VTEPLLQEVF--SSTGPVEGCKLIRKD--KSSYGFIHYFDRRSA 107 (345)
Q Consensus 58 ~l~v~~lp~-~--------~t~~~l~~~f--~~~G~v~~v~~~~~~--~~~~afv~f~~~~~A 107 (345)
++.|-|+|. . .+..+|.+.| +.|.++. |..+... .+|+|.|.|.+.-+-
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g~aIv~F~~dw~G 75 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSGTAIVEFNKDWNG 75 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEEEEEEECCSSHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCceeEEEEecCChHH
Confidence 467778776 1 4457899977 9999985 4554443 468999999886553
No 409
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=31.30 E-value=91 Score=18.97 Aligned_cols=54 Identities=6% Similarity=-0.014 Sum_probs=41.6
Q ss_pred ceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCCHHHHHHHHHh
Q 019152 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQM 319 (345)
Q Consensus 263 ~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~~~~A~~Al~~ 319 (345)
.++.|.++.-.--...|...+.. . -+..+.+....+.+.|.|.+.+....+++.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~--gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-A--GAKVEKVDLNEAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-T--TCEEEEECSSEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-C--CcEEEEEEccCCEEEEEECCHHHHHHHHHH
Confidence 57889999887777888888888 5 377777777778899999866666666654
No 410
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.52 E-value=1.1e+02 Score=20.09 Aligned_cols=54 Identities=13% Similarity=0.106 Sum_probs=39.4
Q ss_pred EEEcCCCcccCHHHHHHHhhh-cCceeeEEEeeeC---CcceEEEEeCCHHHHHHHHHh
Q 019152 265 VYVGNLAPEVTQLDLHRHFHS-LGAGVIEEVRVQR---DKGFGFVRYSTHAEAALAIQM 319 (345)
Q Consensus 265 l~V~nlp~~~t~~~L~~~f~~-~G~~~i~~v~i~~---~~~~afV~f~~~~~A~~Al~~ 319 (345)
-++..++...+..+|++.+++ || +.+..|+... +..-|+|++..-.+|......
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~-VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFN-VKVEKVNTLITPRGEKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTT-CCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcC-CCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHh
Confidence 455568889999999999886 55 6777776543 345699999887777765443
No 411
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=24.28 E-value=1.6e+02 Score=19.46 Aligned_cols=45 Identities=11% Similarity=0.028 Sum_probs=30.6
Q ss_pred HHHHHhhhcCceeeEEEeeeCC-cceEEEEeCCHHHHHHHHHhhCCC
Q 019152 278 DLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHAEAALAIQMGNTT 323 (345)
Q Consensus 278 ~L~~~f~~~G~~~i~~v~i~~~-~~~afV~f~~~~~A~~Al~~l~~~ 323 (345)
.|.......| ..+..+.++.. .||.||+++..++...++....|-
T Consensus 28 ~L~~~~~~~~-l~i~~v~vP~~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 28 LMASRAEKEQ-LDVYSILASESLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp HHHHHHHHTT-CCEEEEEECTTSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred HHHHHHHhcC-CcEEEEEEecccCCEEEEEEecchhHHHHHHCCCCc
Confidence 3444444445 24666666644 899999999999888888766554
No 412
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=20.95 E-value=1.9e+02 Score=19.02 Aligned_cols=55 Identities=15% Similarity=0.091 Sum_probs=43.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHh
Q 019152 56 CRSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSL 114 (345)
Q Consensus 56 ~~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l 114 (345)
.+-+.|-|+|..+-..++.-.....|---.+. --.|.|.+.|.+.++-+.|+..|
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycd----yidgqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCD----YIDGQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEE----ECSSCEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeee----eecCeeEEEecCChHHHHHHHHH
Confidence 46689999999999999888888777543333 23467999999999999999876
No 413
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=20.52 E-value=90 Score=25.64 Aligned_cols=51 Identities=16% Similarity=0.332 Sum_probs=34.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHHhccCCceEEEEeecCCCCeEEEEEeCHHHHHHHHHHhCCCccCC
Q 019152 57 RSVYVGNIHTQVTEPLLQEVFSSTGPVEGCKLIRKDKSSYGFIHYFDRRSAAMAILSLNGRHLFG 121 (345)
Q Consensus 57 ~~l~v~~lp~~~t~~~l~~~f~~~G~v~~v~~~~~~~~~~afv~f~~~~~A~~a~~~l~~~~~~g 121 (345)
..+.|+|||+.++..-|..++.. +.+.+ .+-+...|-|.+.+. -.|..-.|
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~------------~~lm~QkEva~Rl~A-~pg~k~yg 161 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFAR------------LVFLVQKEVAERMTA-RPKTPAYG 161 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEE------------EEEEEEHHHHHHHTC-CTTSTTCS
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCE------------EEEEeeeeeeeeccc-CCCCCccc
Confidence 45799999999999999999987 55432 233445667777653 33443333
No 414
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=20.00 E-value=1.5e+02 Score=17.45 Aligned_cols=54 Identities=9% Similarity=0.078 Sum_probs=39.1
Q ss_pred ceEEEcCCCcccCHHHHHHHhhhcCceeeEEEeeeCCcceEEEEeCC---HHHHHHHHH
Q 019152 263 TTVYVGNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYST---HAEAALAIQ 318 (345)
Q Consensus 263 ~~l~V~nlp~~~t~~~L~~~f~~~G~~~i~~v~i~~~~~~afV~f~~---~~~A~~Al~ 318 (345)
.++.|.++.-.--...|...+.... -+..+.+....+.+.|.|.. .+...+++.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~--gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~ 60 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVP--GVQSCQVNFALEQAVVSYHGETTPQILTDAVE 60 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTST--TEEEEEEETTTTEEEEEECTTCCHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCC--CeEEEEEEecCCEEEEEECCCCCHHHHHHHHH
Confidence 4678888887766778888888764 37778887778889999843 344455554
Done!