BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019153
         (345 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1W7E|A Chain A, Nmr Ensemble Of Fasciclin-Like Protein From Rhodobacter
           Sphaeroides
 pdb|1W7D|A Chain A, Nmr Structure Of Fasciclin-Like Protein From Rhodobacter
           Sphaeroides
          Length = 137

 Score = 36.2 bits (82), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 7/110 (6%)

Query: 70  GRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHILPSRIGSRNWPDEKSG 129
           G    T+FAP + A    L       LL+P N + L  +L +H++P  + S +  +    
Sbjct: 33  GDGPFTVFAPTDAAFAA-LPEGTVEDLLKPENKEKLTEILTYHVVPGEVMSSDLTE---- 87

Query: 130 SRKHNTLWNDFVHLSSKSSKRLIGSAEIFRPDDITRPDGVIHGIERLLVP 179
                T+    + ++ +   ++ G   I +P D+   +GVIH I+ +L+P
Sbjct: 88  GMTAETVEGGALTVTLEGGPKVNG-VSISQP-DVDASNGVIHVIDGVLMP 135


>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
          Length = 916

 Score = 29.3 bits (64), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 45/111 (40%)

Query: 99  PGNVKSLQTLLMFHILPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSSKRLIGSAEIF 158
           P   KS+  +L       + GSR +      + K  T   +     SK   R+    EI+
Sbjct: 126 PLEKKSIDEILQDLFNSFKEGSRIYILAPVATEKKGTFKKEIEEFISKGFARIEIDGEIY 185

Query: 159 RPDDITRPDGVIHGIERLLVPRSVQEDFNRRRNLRSISAVLPQGAPEVDPR 209
           R +++   D       +L+V R + E  N  R L S+   + +G   V+ R
Sbjct: 186 RLEEVPELDKNKRHTVKLVVDRLILETRNEHRILDSLELAMREGKGFVEIR 236


>pdb|2OP6|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein D
           Precursor From C.Elegans
          Length = 152

 Score = 28.1 bits (61), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 32/64 (50%)

Query: 106 QTLLMFHILPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSSKRLIGSAEIFRPDDITR 165
           Q  + F I  + I   +  D+ +G++   T+ ND   LS +  +R+I  A+ F  DD  +
Sbjct: 82  QIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPEDIERMINDADKFAADDQAQ 141

Query: 166 PDGV 169
            + V
Sbjct: 142 KEKV 145


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.139    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,608,280
Number of Sequences: 62578
Number of extensions: 384398
Number of successful extensions: 557
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 554
Number of HSP's gapped (non-prelim): 3
length of query: 345
length of database: 14,973,337
effective HSP length: 100
effective length of query: 245
effective length of database: 8,715,537
effective search space: 2135306565
effective search space used: 2135306565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)