Query 019153
Match_columns 345
No_of_seqs 265 out of 1206
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 07:08:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019153.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019153hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2335 Secreted and surface p 100.0 4.4E-29 9.5E-34 225.4 11.1 140 34-182 45-184 (187)
2 PF02469 Fasciclin: Fasciclin 99.9 1.5E-24 3.2E-29 180.9 8.9 123 47-179 1-128 (128)
3 KOG1437 Fasciclin and related 99.9 1.6E-24 3.5E-29 226.8 4.7 258 29-290 82-378 (682)
4 smart00554 FAS1 Four repeated 99.9 6E-22 1.3E-26 159.3 9.3 97 75-180 1-99 (99)
5 KOG1437 Fasciclin and related 99.2 5.6E-11 1.2E-15 125.6 9.2 136 37-182 508-644 (682)
6 COG2335 Secreted and surface p 81.8 0.16 3.6E-06 46.8 -2.8 64 209-290 72-135 (187)
7 PF08170 POPLD: POPLD (NUC188) 13.5 82 0.0018 25.5 0.7 30 261-290 11-40 (92)
8 PF07125 DUF1378: Protein of u 13.1 64 0.0014 24.5 -0.1 20 264-283 3-30 (59)
9 PF13345 DUF4098: Domain of un 12.4 3.7E+02 0.008 19.3 3.9 43 129-172 14-56 (76)
10 PF08469 NPHI_C: Nucleoside tr 12.0 1E+02 0.0022 27.7 0.8 48 29-82 21-69 (148)
No 1
>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=4.4e-29 Score=225.43 Aligned_cols=140 Identities=26% Similarity=0.373 Sum_probs=131.9
Q ss_pred CCCCCHHHHHhcCCChHHHHHHHHHhCcHHHHHhhhCCCCeEEEeeCcHHHhhcCCHHHHHHhcCCCCHHHHHHHHhccc
Q 019153 34 QINSNSVLVALLDSHYTELAELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHI 113 (345)
Q Consensus 34 ~~~~nIv~vl~~d~~fS~F~~lLekagL~~~L~d~v~~g~~TVFAPTNeAF~~~L~~~~~~~Ll~p~n~~~L~~LL~YHI 113 (345)
....+|++.+.++++|++|..+++.++|.++|+ +.++||||||+|+||.+ |+.++.+.|+.|+|+..|.++|.|||
T Consensus 45 ~~~~~iV~~a~~~~~f~tl~~a~~aa~Lv~~L~---~~gp~TVFaPtn~AFa~-lp~~T~~~Ll~pen~~~L~~iLtYHV 120 (187)
T COG2335 45 GNRADIVESAANNPSFTTLVAALKAAGLVDTLN---ETGPFTVFAPTNEAFAK-LPAGTLDALLKPENKPLLTKILTYHV 120 (187)
T ss_pred cchhHHHHHHccCcchHHHHHHHHhhhhHHHhc---CCCCeEEecCCHHHHHh-CChhHHHHHhCccchhhhheeeEEEE
Confidence 456789999999999999999999999999999 78999999999999999 99999999999999999999999999
Q ss_pred cCCccccCCCCCCCCCcceecccCCCeEEEEEcCCeEEEeeeEEeecCceEcCCcEEEEeCCccCCCCc
Q 019153 114 LPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKSSKRLIGSAEIFRPDDITRPDGVIHGIERLLVPRSV 182 (345)
Q Consensus 114 Vpg~~~s~dL~~~~~~~~~l~TLsG~~L~Vs~~~G~I~VN~A~Vv~~DdI~asNGVIHvID~VLiPpsv 182 (345)
++|+++.+++..... ++|+.|..++|...+++++||+++|+..| |.++|||||+||+||+|+..
T Consensus 121 v~Gk~~~~~l~~~~~----v~t~~G~~~~i~~~~~~~~Vn~a~v~~~d-i~a~NgvIhvID~Vl~Pp~~ 184 (187)
T COG2335 121 VEGKITAADLKSSGS----VKTVQGADLKIKVTGGGVYVNDATVTIAD-INASNGVIHVIDKVLIPPMD 184 (187)
T ss_pred EcCcccHHHhhcccc----ceeecCceEEEEEcCCcEEEeeeEEEecc-EeccCcEEEEEeeeccCCCc
Confidence 999999999986544 88999999999998888999999999998 99999999999999999964
No 2
>PF02469 Fasciclin: Fasciclin domain; InterPro: IPR000782 The FAS1 (fasciclin-like) domain is an extracellular module of about 140 amino acid residues. It has been suggested that the FAS1 domain represents an ancient cell adhesion domain common to plants and animals []; related FAS1 domains are also found in bacteria []. The crystal structure of FAS1 domains 3 and 4 of fasciclin I from Drosophila melanogaster (Fruit fly) has been determined, revealing a novel domain fold consisting of a seven-stranded beta wedge and at least five alpha helices; two well-ordered N-acetylglucosamine groups attached to a conserved asparagine are located in the interface region between the two FAS1 domains []. Fasciclin I is an insect neural cell adhesion molecule involved in axonal guidance that is attached to the membrane by a GPI-anchored protein. FAS1 domains are present in many secreted and membrane-anchored proteins. These proteins are usually GPI anchored and consist of: (i) a single FAS1 domain, (ii) a tandem array of FAS1 domains, or (iii) FAS1 domain(s) interspersed with other domains. Proteins known to contain a FAS1 domain include: Fasciclin I (4 FAS1 domains). Human TGF-beta induced Ig-H3 (BIgH3) protein (4 FAS1 domains), where the FAS1 domains mediate cell adhesion through an interaction with alpha3/beta1 integrin; mutation in the FAS1 domains result in corneal dystrophy []. Volvox major cell adhesion protein (2 FAS1 domains) []. Arabidopsis fasciclin-like arabinogalactan proteins (2 FAS1 domains) []. Mammalian stabilin protein, a family of fasciclin-like hyaluronan receptor homologues (7 FAS1 domains)[]. Human extracellular matrix protein periostin (4 FAS1 domains). Bacterial immunogenic protein MPT70 (1 FAS1 domain) []. The FAS1 domains of both human periostin (Q15063 from SWISSPROT) and BIgH3 (Q15582 from SWISSPROT) proteins were found to contain vitamin K-dependent gamma-carboxyglutamate residues []. Gamma-carboxyglutamate residues are more commonly associated with GLA domains (IPR000294 from INTERPRO), where they occur through post-translational modification catalysed by the vitamin K-dependent enzyme gamma-glutamylcarboxylase.; PDB: 1O70_A 1W7D_A 1W7E_A 1NYO_A 1X3B_A 2VXP_A.
Probab=99.91 E-value=1.5e-24 Score=180.88 Aligned_cols=123 Identities=30% Similarity=0.514 Sum_probs=104.2
Q ss_pred CChHHHHHHHHHhCcHHHHHhhhCCCCeEEEeeCcHHHhhcCCHHHHHHhcCCCCHHHHHHHHhccccCCccccCCCCCC
Q 019153 47 SHYTELAELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHILPSRIGSRNWPDE 126 (345)
Q Consensus 47 ~~fS~F~~lLekagL~~~L~d~v~~g~~TVFAPTNeAF~~~L~~~~~~~Ll~p~n~~~L~~LL~YHIVpg~~~s~dL~~~ 126 (345)
|+||+|.++|++++|.+.|++ ..+.||||||+|+||++ +..+....+.+ +.+.++++|+|||+++.++.++|...
T Consensus 1 ~~~s~f~~~l~~~~l~~~l~~--~~~~~TvfaP~d~a~~~-~~~~~~~~~~~--~~~~l~~~l~~hiv~~~~~~~~l~~~ 75 (128)
T PF02469_consen 1 PDLSTFSRLLEQAGLADLLND--SDGNYTVFAPTDDAFQK-LSQETNSSLAD--SKEQLKSLLKYHIVPGSITSSDLRNG 75 (128)
T ss_dssp -TTHHHHHHHHHTTCHHHHGC--SSSSEEEEEE-HHHHHH-SHHHHHHHHHT--HHHHHHHHHHHTEEES---HCHHHCH
T ss_pred CCHHHHHHHHHHcCCHHHHhc--CCCCEEEEEECHHHHHh-ccccccchhhh--hhhhHhhhhhhEEEcCceehhhhccc
Confidence 689999999999999999942 56899999999999999 76666666654 67899999999999999999999877
Q ss_pred -CCCcceecc-cCCCeEEEEEc--CCeEEEee-eEEeecCceEcCCcEEEEeCCccCC
Q 019153 127 -KSGSRKHNT-LWNDFVHLSSK--SSKRLIGS-AEIFRPDDITRPDGVIHGIERLLVP 179 (345)
Q Consensus 127 -~~~~~~l~T-LsG~~L~Vs~~--~G~I~VN~-A~Vv~~DdI~asNGVIHvID~VLiP 179 (345)
. .++| ++|+.+.|+.. ++.++||+ ++|+..| +.++||+||+||+||+|
T Consensus 76 ~~----~~~t~~~g~~~~v~~~~~~~~~~v~~~a~i~~~~-~~~~nG~ih~id~vL~P 128 (128)
T PF02469_consen 76 KQ----TLETLLNGQPLRVSSSPSNGTIYVNGKARIVKSD-IEASNGVIHIIDDVLIP 128 (128)
T ss_dssp HE----EEEBSSTTCEEEEEEEGGTTEEEECCEEEESEEE-EEESSEEEEEESS-TSS
T ss_pred cc----cceeccCCCEEEEEEEecCCceEecCceEEEeCC-EEeCCEEEEEECceECc
Confidence 3 3788 89999999986 78999999 9999998 99999999999999998
No 3
>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.90 E-value=1.6e-24 Score=226.83 Aligned_cols=258 Identities=45% Similarity=0.604 Sum_probs=220.3
Q ss_pred CCCCCCCCCCHHHHHhcCCChHHHHHHHHHhCcHHHHHh------hhCCCCeEEEeeCcHHHhhcCCHHHHHHhcCCCCH
Q 019153 29 SSSQPQINSNSVLVALLDSHYTELAELVEKALLLQTLEE------AVGRHNITIFAPKNEALERELDPEFKRFLLEPGNV 102 (345)
Q Consensus 29 ~s~~~~~~~nIv~vl~~d~~fS~F~~lLekagL~~~L~d------~v~~g~~TVFAPTNeAF~~~L~~~~~~~Ll~p~n~ 102 (345)
.+....+..+.+..+..+.........++++.+.+.+++ ..+++++|+|+|.|+||...++..+..++..+.|.
T Consensus 82 ~~~~~~i~~~~v~pa~lps~~~~~~~~v~~a~t~Q~~~n~~~~~~~~g~~~ftIFa~~neaw~~~~d~~v~~~le~~~n~ 161 (682)
T KOG1437|consen 82 QPGTGKIETNAVFPALLPSRNNALAEGVEKALTLQVLENTASKLEAEGNKDFTIFAPSNEAWTNNLDSRVKSFLESPYNL 161 (682)
T ss_pred CCcceEecccccccccCCchhhhhhhhhcceeEEEecccchhhhhhccCCceEEecccccchhcCCChhhhhhccccchH
Confidence 344567778888888888888888889999887766665 33789999999999999987888899999888999
Q ss_pred HHHHHHHhccccCCc-cccCCCCCCCCCcceecccCCCeEEEEEcC----CeEEEeeeEEeecCceEcCCcEEEEeCCcc
Q 019153 103 KSLQTLLMFHILPSR-IGSRNWPDEKSGSRKHNTLWNDFVHLSSKS----SKRLIGSAEIFRPDDITRPDGVIHGIERLL 177 (345)
Q Consensus 103 ~~L~~LL~YHIVpg~-~~s~dL~~~~~~~~~l~TLsG~~L~Vs~~~----G~I~VN~A~Vv~~DdI~asNGVIHvID~VL 177 (345)
+.+++++.+|+++.+ +..+++.+.......+.++.++.+.....- .+-.+|.+.++..+|+...+|+||.|++.+
T Consensus 162 d~~~~~l~~h~i~q~~v~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~t~~~Di~~~d~~I~~I~~~~ 241 (682)
T KOG1437|consen 162 DSLNQLLRSHIINQRLVSSAQLPNKMIIPKMHRTLGNKELHYLNGIVTVNYKRLVNNDVITTNYDLLRIDGVIHTIGRLI 241 (682)
T ss_pred HHHHHHHHhcccchhhccchhcccccccccccccCCCceEEeeccccceeccccccccccccccccccCCCceEeeeecc
Confidence 999999999999999 778888877654445677777766543321 222355555555555888899999999999
Q ss_pred CCCCchHHHhhccccccccccCCCCCCCCCcccccccCCCCC--CCCCCCCCcc-------------ccccCCCCCCCCC
Q 019153 178 VPRSVQEDFNRRRNLRSISAVLPQGAPEVDPRTHRLKKPAAP--VPAGAPPILP-------------IYDAMAPGPSLAP 242 (345)
Q Consensus 178 iPpsv~~~f~~~r~L~si~av~P~gap~~d~~~~~l~~~~~~--~~~~~~~~~p-------------~~~~~~~~p~~~~ 242 (345)
.|.++++|+.++....+++...|+.++.+|+|+|+..++... ++.+.+|..+ |.++|.+|+++++
T Consensus 242 ~~~~~~~d~~~~~~~~~~t~~~~e~a~~~d~rt~~a~tn~a~~~ip~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~s~~~ 321 (682)
T KOG1437|consen 242 IPRIEQEDFLKYLSGASATVFLPELAPFVDPRTHLAPTNEAFFTIPRGYPPRILGYHLVLGNLKYNHILDNMKLGPSLAP 321 (682)
T ss_pred chhhhhccchhcccccceeeeccccccccccccccccCcchhhcccccCCCcccccccchhhhhhhhhcccccccccccc
Confidence 999999999999999999999999999999999999999776 6678999999 9999999999999
Q ss_pred ----------CCCCCCCCCCCCCCChhhH-HHHHHH--HHhhcccCCCcCccccccccCCC
Q 019153 243 ----------APAPGPGGAHRHFNGERQV-KDFIHT--LLHYGQRNGGYSGELDVVSDGNG 290 (345)
Q Consensus 243 ----------~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~ 290 (345)
++|||++|.+|+++|..++ ||||+| ++||+ |||+|+|+++++.+
T Consensus 322 ~~~r~~~~~~~~a~g~~g~~~~~ng~~~I~kd~i~~~~~lh~i----d~~l~p~~~~~l~~ 378 (682)
T KOG1437|consen 322 GTVRLTGEGVAIAPGSSGERYHINGRAIIQKDFIHTNGLLHYI----DYVLEPDSLKNLMS 378 (682)
T ss_pred cceeeccccccccccCCCceEEeecceeEEEeeeccceEEEEc----ccccCCchHHHHHH
Confidence 9999999999999999999 999999 99999 99999999988877
No 4
>smart00554 FAS1 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
Probab=99.87 E-value=6e-22 Score=159.27 Aligned_cols=97 Identities=31% Similarity=0.569 Sum_probs=86.2
Q ss_pred EEEeeCcHHHhhcCCHHHHHHhcCCCCHHHHHHHHhccccCCccccCCCCCCCCCcceecccCCCeEEEEEcC--CeEEE
Q 019153 75 TIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHILPSRIGSRNWPDEKSGSRKHNTLWNDFVHLSSKS--SKRLI 152 (345)
Q Consensus 75 TVFAPTNeAF~~~L~~~~~~~Ll~p~n~~~L~~LL~YHIVpg~~~s~dL~~~~~~~~~l~TLsG~~L~Vs~~~--G~I~V 152 (345)
|||||+|+||++ +..+.++.+.. +. .++++|+|||+++.++.++|..+.. ++|+.|+.+++++.+ +.+++
T Consensus 1 TvfaP~d~Af~~-~~~~~~~~l~~--~~-~l~~ll~~Hiv~~~~~~~~l~~~~~----~~Tl~g~~l~v~~~~~~~~i~i 72 (99)
T smart00554 1 TVFAPTDEAFQK-LPPGTLNSLLA--DP-KLKNLLLYHVVPGRLSSADLLNGGT----LPTLAGSKLRVTRSGDSGTVTV 72 (99)
T ss_pred CEeCcCHHHHHh-cCHHHHHHHhC--CH-HHHHHHHhcEeCceEcHHHhccCCc----cccCCCCEEEEEEeCCCCeEEE
Confidence 899999999999 77766666653 33 8999999999999999999987543 889999999999966 78999
Q ss_pred eeeEEeecCceEcCCcEEEEeCCccCCC
Q 019153 153 GSAEIFRPDDITRPDGVIHGIERLLVPR 180 (345)
Q Consensus 153 N~A~Vv~~DdI~asNGVIHvID~VLiPp 180 (345)
|+++|+++| +.++||+||+||+||+|+
T Consensus 73 n~~~v~~~d-i~~~nGvih~Id~vL~P~ 99 (99)
T smart00554 73 NGARIVEAD-IAATNGVVHVIDRVLLPP 99 (99)
T ss_pred cceEEEECC-EecCCeEEEEECceeCCC
Confidence 999999998 999999999999999996
No 5
>KOG1437 consensus Fasciclin and related adhesion glycoproteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.18 E-value=5.6e-11 Score=125.64 Aligned_cols=136 Identities=23% Similarity=0.277 Sum_probs=99.2
Q ss_pred CCHHHHHhcCCChHHHHHHHHHhCcHHHHHhhhCCCCeEEEeeCcHHHhhcCCHHHHHHhcCCCCHHHHHHHHhccccCC
Q 019153 37 SNSVLVALLDSHYTELAELVEKALLLQTLEEAVGRHNITIFAPKNEALERELDPEFKRFLLEPGNVKSLQTLLMFHILPS 116 (345)
Q Consensus 37 ~nIv~vl~~d~~fS~F~~lLekagL~~~L~d~v~~g~~TVFAPTNeAF~~~L~~~~~~~Ll~p~n~~~L~~LL~YHIVpg 116 (345)
.++++.+.++..+|.+.++++..++.+.|. ..+.||+|||||+||.+ ...+... + .+...|+.+++||++++
T Consensus 508 ~~l~~~l~~d~r~s~~~~~le~~~l~e~l~---~~~~~t~fvPt~ka~~~-~~~~~~~-~---~~~~~l~~~l~yH~v~~ 579 (682)
T KOG1437|consen 508 VSLMEDLKTDGRISGTVQGLEGVLLPEELT---PEGNYTLFVPTNKAWQK-STKDEKS-L---FHKKALQDFLKYHLVPG 579 (682)
T ss_pred ccHHHHHhhccchhhhHHhhhhcCChhhhc---cCCceEEEeeccccccc-CCcchhh-c---chHHHHHHHHHhccccc
Confidence 678899999999999999999999999997 67999999999999998 5443322 2 25678999999999998
Q ss_pred ccc-cCCCCCCCCCcceecccCCCeEEEEEcCCeEEEeeeEEeecCceEcCCcEEEEeCCccCCCCc
Q 019153 117 RIG-SRNWPDEKSGSRKHNTLWNDFVHLSSKSSKRLIGSAEIFRPDDITRPDGVIHGIERLLVPRSV 182 (345)
Q Consensus 117 ~~~-s~dL~~~~~~~~~l~TLsG~~L~Vs~~~G~I~VN~A~Vv~~DdI~asNGVIHvID~VLiPpsv 182 (345)
... ...-....... ...+..|+.+.+.....+..+|..+++..| |...||++|+||.||.|+++
T Consensus 580 ~~~ls~~~~~~v~~~-~k~s~~~~~~~~~~~~~~~~vn~e~~~~~~-i~~~n~~~h~i~~vl~p~~l 644 (682)
T KOG1437|consen 580 QSRLSLGSSPYVMIQ-VKLSLRGDHLFFSLVNPRGDVNKERLVGID-IMGTNGVVHVIDLVLKPPDL 644 (682)
T ss_pred eeeeecccccceeee-eeEEEecccEEeeeeccccceeeeeeeccc-eeeecceeEEEEEEcccCcc
Confidence 774 11111110000 011223333333333334456788899998 99999999999999999844
No 6
>COG2335 Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]
Probab=81.79 E-value=0.16 Score=46.82 Aligned_cols=64 Identities=17% Similarity=0.205 Sum_probs=52.7
Q ss_pred ccccccCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCChhhHHHHHHHHHhhcccCCCcCccccccccC
Q 019153 209 RTHRLKKPAAPVPAGAPPILPIYDAMAPGPSLAPAPAPGPGGAHRHFNGERQVKDFIHTLLHYGQRNGGYSGELDVVSDG 288 (345)
Q Consensus 209 ~~~~l~~~~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 288 (345)
.+..|+.++| +++ |+|+.+||+..|. |+-...... |.|+.+.-+|.||+++| ..|++-++..
T Consensus 72 Lv~~L~~~gp-~TV----FaPtn~AFa~lp~-------~T~~~Ll~p----en~~~L~~iLtYHVv~G--k~~~~~l~~~ 133 (187)
T COG2335 72 LVDTLNETGP-FTV----FAPTNEAFAKLPA-------GTLDALLKP----ENKPLLTKILTYHVVEG--KITAADLKSS 133 (187)
T ss_pred hHHHhcCCCC-eEE----ecCCHHHHHhCCh-------hHHHHHhCc----cchhhhheeeEEEEEcC--cccHHHhhcc
Confidence 5667777766 888 9999999999999 887777765 36888999999999999 8888888764
Q ss_pred CC
Q 019153 289 NG 290 (345)
Q Consensus 289 ~~ 290 (345)
.+
T Consensus 134 ~~ 135 (187)
T COG2335 134 GS 135 (187)
T ss_pred cc
Confidence 44
No 7
>PF08170 POPLD: POPLD (NUC188) domain; InterPro: IPR012590 This domain is found in POP1-like nucleolar proteins [].; GO: 0004526 ribonuclease P activity, 0006396 RNA processing
Probab=13.49 E-value=82 Score=25.53 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhcccCCCcCccccccccCCC
Q 019153 261 VKDFIHTLLHYGQRNGGYSGELDVVSDGNG 290 (345)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 290 (345)
++.|..+|...|+++||-+|+.-+.-+...
T Consensus 11 ~~~fW~~L~~~g~r~~GL~e~~~~~~E~g~ 40 (92)
T PF08170_consen 11 GMPFWIALVYRGARAGGLRERRQLAFESGI 40 (92)
T ss_pred HHHHHHHHHHhCCeeehHHHHHHHHHHcCC
Confidence 678999999999999999998877666544
No 8
>PF07125 DUF1378: Protein of unknown function (DUF1378); InterPro: IPR009808 This entry is represented by Bacteriophage 933W, Orf25. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of hypothetical bacterial and phage proteins of around 59 residues in length. Bacterial members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=13.12 E-value=64 Score=24.46 Aligned_cols=20 Identities=35% Similarity=0.562 Sum_probs=14.5
Q ss_pred HHHHHHhhc--------ccCCCcCcccc
Q 019153 264 FIHTLLHYG--------QRNGGYSGELD 283 (345)
Q Consensus 264 ~~~~~~~~~--------~~~~~~~~~~~ 283 (345)
|++++|.|. -++|||..|-+
T Consensus 3 f~~~~lLyFctvVcaLYLvsGGyk~IRn 30 (59)
T PF07125_consen 3 FVQTILLYFCTVVCALYLVSGGYKVIRN 30 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 888888887 35778876644
No 9
>PF13345 DUF4098: Domain of unknown function (DUF4098)
Probab=12.38 E-value=3.7e+02 Score=19.32 Aligned_cols=43 Identities=23% Similarity=0.163 Sum_probs=0.0
Q ss_pred CcceecccCCCeEEEEEcCCeEEEeeeEEeecCceEcCCcEEEE
Q 019153 129 GSRKHNTLWNDFVHLSSKSSKRLIGSAEIFRPDDITRPDGVIHG 172 (345)
Q Consensus 129 ~~~~l~TLsG~~L~Vs~~~G~I~VN~A~Vv~~DdI~asNGVIHv 172 (345)
+.+.+.-+.+..+.+....|.+.+......... +...+|=|++
T Consensus 14 G~i~~~~~~~~~~~i~~~~G~i~i~~~~~~~~~-~~~~~G~i~~ 56 (76)
T PF13345_consen 14 GDIKLTNVKADNLDISSGSGDIDIQNVESSSIK-VSTSSGDISL 56 (76)
T ss_pred EEEEECceEeceEEEEeCCCCEEEEEeeeeeee-eeccccCEEE
No 10
>PF08469 NPHI_C: Nucleoside triphosphatase I C-terminal; InterPro: IPR013676 This viral domain is found to the C terminus of Poxvirus nucleoside triphosphatase phosphohydrolase I (NPH I) [] together with the helicase conserved C-terminal domain (IPR001650 from INTERPRO). ; GO: 0005524 ATP binding, 0017111 nucleoside-triphosphatase activity, 0006351 transcription, DNA-dependent
Probab=11.96 E-value=1e+02 Score=27.68 Aligned_cols=48 Identities=15% Similarity=0.329 Sum_probs=0.0
Q ss_pred CCCCCCCCCCHHHHHhc-CCChHHHHHHHHHhCcHHHHHhhhCCCCeEEEeeCcH
Q 019153 29 SSSQPQINSNSVLVALL-DSHYTELAELVEKALLLQTLEEAVGRHNITIFAPKNE 82 (345)
Q Consensus 29 ~s~~~~~~~nIv~vl~~-d~~fS~F~~lLekagL~~~L~d~v~~g~~TVFAPTNe 82 (345)
+++.+..+..++++++. ..+|+.|..+|+.+.+...-+ .++=|.|-|+
T Consensus 21 ~ng~~sVDedlldiIk~Kskef~qLf~vlK~sSIEwI~~------~~k~f~pvdd 69 (148)
T PF08469_consen 21 SNGRPSVDEDLLDIIKDKSKEFNQLFKVLKESSIEWIYE------NYKDFSPVDD 69 (148)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH------hCCCCCcccc
Done!