BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019157
(345 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CXP|A Chain A, Crystal Structure Of Human Glucosamine 6-Phosphate N-
Acetyltransferase 1 Mutant E156a
Length = 184
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 51 KGFFWAFDQIVETGQIPYEEILKARVLERKS----VKVIELGSDEVGRVLGQVIDTFNLA 106
+GFF Q+ ETG + E+ +K+ +KS V V+E LGQ++ T L
Sbjct: 51 RGFFKVLGQLTETGVVSPEQFMKSFEHMKKSGDYYVTVVE------DVTLGQIVATATLI 104
Query: 107 PVHLVLHDSA 116
H +H A
Sbjct: 105 IEHKFIHSCA 114
>pdb|2HUZ|A Chain A, Crystal Structure Of Gnpnat1
pdb|2HUZ|B Chain B, Crystal Structure Of Gnpnat1
pdb|2O28|A Chain A, Crystal Structure Of Gnpnat1
pdb|2O28|B Chain B, Crystal Structure Of Gnpnat1
pdb|3CXQ|A Chain A, Crystal Structure Of Human Glucosamine 6-Phosphate N-
Acetyltransferase 1 Bound To Glcn6p
pdb|3CXS|A Chain A, Crystal Structure Of Human Gna1
Length = 184
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 51 KGFFWAFDQIVETGQIPYEEILKARVLERKS----VKVIELGSDEVGRVLGQVIDTFNLA 106
+GFF Q+ ETG + E+ +K+ +KS V V+E LGQ++ T L
Sbjct: 51 RGFFKVLGQLTETGVVSPEQFMKSFEHMKKSGDYYVTVVE------DVTLGQIVATATLI 104
Query: 107 PVHLVLHDSA 116
H +H A
Sbjct: 105 IEHKFIHSCA 114
>pdb|2IJA|A Chain A, Human N-Acetyltransferase 1 F125s Mutant
Length = 295
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 44 VYGLIQEKGFFWAFDQIVETGQIPYEEILKARVLERKSVKVI 85
V+ L +E GF W DQI IP EE L + +LE + I
Sbjct: 154 VFRLTEENGF-WYLDQIRREQYIPNEEFLHSDLLEDSKYRKI 194
>pdb|2PQT|A Chain A, Human N-Acetyltransferase 1
Length = 295
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 44 VYGLIQEKGFFWAFDQIVETGQIPYEEILKARVLERKSVKVI 85
V+ L +E GF W DQI IP EE L + +LE + I
Sbjct: 154 VFRLTEENGF-WYLDQIRREQYIPNEEFLHSDLLEDSKYRKI 194
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 90 DEVGRVLGQVIDTFNLAPVHLVLHDSALPMSANWVAENPGSVKSLTLLD 138
D+ R L I+ L V LV+HD + +W NP VK + ++
Sbjct: 82 DDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 90 DEVGRVLGQVIDTFNLAPVHLVLHDSALPMSANWVAENPGSVKSLTLLD 138
D+ R L I+ L V LV+HD + +W NP VK + ++
Sbjct: 79 DDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 127
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 90 DEVGRVLGQVIDTFNLAPVHLVLHDSALPMSANWVAENPGSVKSLTLLD 138
D+ R L I+ L V LV+HD + +W NP VK + ++
Sbjct: 82 DDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 90 DEVGRVLGQVIDTFNLAPVHLVLHDSALPMSANWVAENPGSVKSLTLLD 138
D+ R L I+ L V LV+HD + +W NP VK + ++
Sbjct: 82 DDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 90 DEVGRVLGQVIDTFNLAPVHLVLHDSALPMSANWVAENPGSVKSLTLLD 138
D+ R L I+ L V LV+HD + +W NP VK + ++
Sbjct: 82 DDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 90 DEVGRVLGQVIDTFNLAPVHLVLHDSALPMSANWVAENPGSVKSLTLLD 138
D+ R L I+ L V LV+HD + +W NP VK + ++
Sbjct: 82 DDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 90 DEVGRVLGQVIDTFNLAPVHLVLHDSALPMSANWVAENPGSVKSLTLLD 138
D+ R L I+ L V LV+HD + +W NP VK + ++
Sbjct: 82 DDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 90 DEVGRVLGQVIDTFNLAPVHLVLHDSALPMSANWVAENPGSVKSLTLLD 138
D+ R L I+ L V LV+HD + +W NP VK + ++
Sbjct: 82 DDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 90 DEVGRVLGQVIDTFNLAPVHLVLHDSALPMSANWVAENPGSVKSLTLLD 138
D+ R L I+ L V LV+HD + +W NP VK + ++
Sbjct: 79 DDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 127
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 90 DEVGRVLGQVIDTFNLAPVHLVLHDSALPMSANWVAENPGSVKSLTLLD 138
D+ R L I+ L V LV+HD + +W NP VK + ++
Sbjct: 82 DDHVRYLDAFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
>pdb|3FNB|A Chain A, Crystal Structure Of Acylaminoacyl Peptidase Smu_737 From
Streptococcus Mutans Ua159
pdb|3FNB|B Chain B, Crystal Structure Of Acylaminoacyl Peptidase Smu_737 From
Streptococcus Mutans Ua159
Length = 405
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 10 FNVIAVDLPGNGFSDRSRMEFEERSDGAFQRFKDVYGLIQEK 51
+NV+ VDLPG G + + FE + A D Y EK
Sbjct: 188 YNVLXVDLPGQGKNPNQGLHFEVDARAAISAILDWYQAPTEK 229
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 90 DEVGRVLGQVIDTFNLAPVHLVLHDSALPMSANWVAENPGSVKSLTLLD 138
D+ R L I+ L V LV+HD + +W NP VK + ++
Sbjct: 82 DDHVRYLDAFIEAVGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACME 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,061,781
Number of Sequences: 62578
Number of extensions: 327396
Number of successful extensions: 729
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 714
Number of HSP's gapped (non-prelim): 21
length of query: 345
length of database: 14,973,337
effective HSP length: 100
effective length of query: 245
effective length of database: 8,715,537
effective search space: 2135306565
effective search space used: 2135306565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)