BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019157
         (345 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9FZ33|AXR4_ARATH Protein AUXIN RESPONSE 4 OS=Arabidopsis thaliana GN=AXR4 PE=1 SV=1
          Length = 473

 Score =  375 bits (964), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/344 (56%), Positives = 251/344 (72%), Gaps = 10/344 (2%)

Query: 1   MINSLRSKKFNVIAVDLPGNGFSDRSRMEFE-ERSDGAFQRFKDVYGLIQEKGFFWAFDQ 59
           MI SL SK  + +A+DLPGNGFSD+S +    +R  G   R K+VYGLIQEKG FWAFDQ
Sbjct: 136 MIQSLGSKGIHSVAIDLPGNGFSDKSMVVIGGDREIGFVARVKEVYGLIQEKGVFWAFDQ 195

Query: 60  IVETGQIPYEEILKARVLERKSVKVIELGSDEVGRVLGQVIDTFNLAPVHLVLHDSALPM 119
           ++ETG +PYEEI+K +  +R+S K IELGS+E  RVLGQVIDT  LAPVHLVLHDSAL +
Sbjct: 196 MIETGDLPYEEIIKLQNSKRRSFKAIELGSEETARVLGQVIDTLGLAPVHLVLHDSALGL 255

Query: 120 SANWVAENPGSVKSLTLLDTGIKPALPLFALNLPLIRDFVLGSSFGYQWLIRFCCMKKVG 179
           ++NWV+EN  SV+S+TL+D+ I PALPL+ LN+P IR+ +L  SFG++ L+ F C K++ 
Sbjct: 256 ASNWVSENWQSVRSVTLIDSSISPALPLWVLNVPGIREILLAFSFGFEKLVSFRCSKEMT 315

Query: 180 SFDVEDNRVLLKGRDRCRAVSEMGRKLNNSFDMAEWGSSEGIKGIPMQILWSSVWSKEWS 239
             D++ +R+LLKGR+   AV     KLN+SFD+A+WG+S+GI GIPMQ++WSS  SKEWS
Sbjct: 316 LSDIDAHRILLKGRNGREAVVASLNKLNHSFDIAQWGNSDGINGIPMQVIWSSEASKEWS 375

Query: 240 EEGSRVADALPQAKFVGHSGGRWPQVDSADELAKHIADFVSSLPKTVRQVEEEPIPEHIQ 299
           +EG RVA ALP+AKFV HSG RWPQ   + ELA +I++FVS LPK++R+V EEPIPE +Q
Sbjct: 376 DEGQRVAKALPKAKFVTHSGSRWPQESKSGELADYISEFVSLLPKSIRRVAEEPIPEEVQ 435

Query: 300 KMFDEASSSGHNHDHHHSHSGHDNHEGHAHAAGYMDAYGLGHTW 343
           K+ +EA +   +  HH               AGY DAYGLG  W
Sbjct: 436 KVLEEAKAGDDHDHHHGH---------GHAHAGYSDAYGLGEEW 470


>sp|P73883|Y249_SYNY3 Uncharacterized protein sll0249 OS=Synechocystis sp. (strain PCC
           6803 / Kazusa) GN=sll0249 PE=4 SV=1
          Length = 251

 Score = 36.6 bits (83), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 95  VLGQVIDTFNLAPVHLVLHDSALPMSANWVAENPGSVKSLTLLDTGIKPAL 145
           ++G+ ++ F+  PVHL+ H ++  ++  +  + P  V+SL+LL  G+ PAL
Sbjct: 59  LIGEYLENFH-QPVHLIGHSTSGLLALLYARQCPEKVRSLSLLSVGVYPAL 108


>sp|O58734|SYP_PYRHO Proline--tRNA ligase OS=Pyrococcus horikoshii (strain ATCC 700860 /
           DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=proS PE=3
           SV=2
          Length = 480

 Score = 32.0 bits (71), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 75/179 (41%), Gaps = 26/179 (14%)

Query: 78  ERKSVKVIELGSDEVGRVLGQVIDTFNLAPVHLVLHDSALPMSANWVAENPGSVKSLTLL 137
           ER    VI +  D+ G VL   I     AP+ +V+       S   V      ++   L 
Sbjct: 262 ERLLAAVIAIHGDDRGMVLPPTI-----APIQVVIVPIPKKGSEEEVYSYAKGIEE-ELR 315

Query: 138 DTGIKPALPLFALNLPLIRDFVLGSSFGYQWLIRFCCMK-KVGSFDVEDNRVLLKGRDRC 196
           D GI+  L L        RD   G  F Y W ++   ++ +VG  DV+++ V+L  RD+ 
Sbjct: 316 DAGIRVYLDL--------RDKRPGWKF-YDWELKGVPVRVEVGPIDVQNSTVVLARRDKL 366

Query: 197 RAVSEMGRKLNNSFDMAEWGSSEGIKGIPMQILWSSVWSKEWSEEGSRVADALPQAKFV 255
             ++    +L +          E  + I M+ L+    + EW E   +  D L +AK V
Sbjct: 367 EKITVKREELVDKV-------RELFEDI-MEFLYER--ANEWLESHIKRVDTLEEAKAV 415


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.136    0.418 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,958,878
Number of Sequences: 539616
Number of extensions: 5904978
Number of successful extensions: 23450
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 121
Number of HSP's that attempted gapping in prelim test: 20336
Number of HSP's gapped (non-prelim): 1881
length of query: 345
length of database: 191,569,459
effective HSP length: 118
effective length of query: 227
effective length of database: 127,894,771
effective search space: 29032113017
effective search space used: 29032113017
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)