BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019158
(345 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH AA+G+ V+ LLK+ D+NA D G+T LH A + LL+ A+
Sbjct: 42 PLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAY 101
Query: 340 DEVMW 344
D W
Sbjct: 102 DRAGW 106
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%)
Query: 275 SKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESA 334
S PLH A G V+ LLKH D+NA D+ G T LH A + + + LL+ A
Sbjct: 70 SAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA 129
Query: 335 N 335
+
Sbjct: 130 D 130
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI 318
W PLH A SG+ V+ LLKH D+NA D GLTA +I
Sbjct: 106 WTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISI 146
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
AA+G+ V L+ + D+NA D +GLT LH A + + LL+ A+
Sbjct: 14 AAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD 64
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANP 336
W PLH A++G V ALL +NAV+++G T LH A + + LL ANP
Sbjct: 74 WSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANP 336
W PLH A++G V ALL +NAV+++G T LH A + + LL ANP
Sbjct: 75 WSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 133
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANP 336
W PLH A++G V ALL +NAV+++G T LH A + + LL ANP
Sbjct: 74 WSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 253 KLFTKEEKVLLNKKLPHLATATSK-KWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGL 311
KL +E++L +K L AT T + LH ++G V+ LL+ V +N D G
Sbjct: 18 KLDELKERILADKSL---ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGW 74
Query: 312 TALHKAIIGKKQAVTNYLLRESANPFVVDE 341
+ LH A + + LL + A+ V++
Sbjct: 75 SPLHIAASAGRDEIVKALLVKGAHVNAVNQ 104
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
PLH AA+G V+ LLKH D+NA D DG T LH A + LL+ A+
Sbjct: 83 PLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD 138
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
+ PLH A++G V+ LLK+ D+NA D G+T LH A + LL+ A+
Sbjct: 48 YTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGAD 105
Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 22/39 (56%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI 318
PLH A G V+ LLKH D+NA DK G TA +I
Sbjct: 116 PLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
A +G+ V L+ + D+NA D DG T LH A + LL+ A+
Sbjct: 22 ARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGAD 72
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 31/59 (52%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANP 336
W PLH A++G V ALL +NAV+++G T LH A + + LL ANP
Sbjct: 74 WSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP 132
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 31/61 (50%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH A G V+ LLKH D+NA+D G T LH A + + LL+ A+ V
Sbjct: 50 PLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAV 109
Query: 340 D 340
D
Sbjct: 110 D 110
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 29/56 (51%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
PLH A G V+ LLKH D+NAVD G T LH A I + LL+ A+
Sbjct: 83 PLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 20/34 (58%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTA 313
PLH A G V+ LLKH D+NA DK G TA
Sbjct: 116 PLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTA 149
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD 340
A +G+ V L+ + D+NA D GLT LH A + LL+ A+ +D
Sbjct: 22 ARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 31/61 (50%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH A G V+ LLKH D+NA+D G T LH A + + LL+ A+ V
Sbjct: 50 PLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAV 109
Query: 340 D 340
D
Sbjct: 110 D 110
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 29/56 (51%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
PLH A G V+ LLKH D+NAVD G T LH A I + LL+ A+
Sbjct: 83 PLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 20/34 (58%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTA 313
PLH A G V+ LLKH D+NA DK G TA
Sbjct: 116 PLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTA 149
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD 340
A +G+ V L+ + D+NA D GLT LH A + LL+ A+ +D
Sbjct: 22 ARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 275 SKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESA 334
+ W PLH A +G V+ LLK+ D+NAVD G+T L A + + LL+ A
Sbjct: 45 ASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGA 104
Query: 335 N 335
+
Sbjct: 105 D 105
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
PL A G V+ LLK+ D+NA D +G T LH A + + LL+ A+
Sbjct: 83 PLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD 138
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI 318
PLH A G V+ LLK+ D+NA DK G TA +I
Sbjct: 116 PLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISI 154
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%)
Query: 275 SKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESA 334
+ W PLH A +G V+ LLK+ D+NA D GLT LH A + LL+ A
Sbjct: 78 TDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGA 137
Query: 335 N 335
+
Sbjct: 138 D 138
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 28/56 (50%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
PLH A G V+ LLKH D+NA D DG T LH A + LL+ A+
Sbjct: 50 PLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGAD 105
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 22/39 (56%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI 318
PLH A G V+ LLKH D+NA DK G TA +I
Sbjct: 116 PLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 30/61 (49%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH A G V+ LLKH D+NA DK G T LH A + + LL+ A+
Sbjct: 50 PLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNAT 109
Query: 340 D 340
D
Sbjct: 110 D 110
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
PLH A G V+ LLK+ D+NA D G T LH A + LL+ A+
Sbjct: 83 PLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD 138
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 236 NSGNYDPPDKKSDGPRR--KLFTKEEKV-LLNKKLPHLATATSKKWLPLHSLAASGEFYF 292
+ + + DK D P L+ E V +L K + + + PLH A +G
Sbjct: 69 HGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEI 128
Query: 293 VDALLKHNVDINAVDKDGLTALHKAI 318
V+ LLK+ D+NA DK G TA +I
Sbjct: 129 VEVLLKYGADVNAQDKFGKTAFDISI 154
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 275 SKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESA 334
+K PLH A V LL+H D++A DK GL LH A VT LL+ A
Sbjct: 56 GRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGA 115
Query: 335 NPFVVDEVMWK 345
+D +W+
Sbjct: 116 CVNAMD--LWQ 124
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 279 LPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV 338
+PLH+ + G + + LLKH +NA+D T LH+A + V + LL A+P +
Sbjct: 93 VPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTL 152
Query: 339 VD 340
V+
Sbjct: 153 VN 154
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH A ++ L KH +NA+D G TALH+A + LL ++P ++
Sbjct: 250 PLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSII 309
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
PLH A+ G V+ LLKH D+NA D +TALH A Q V L++ A+
Sbjct: 70 PLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD 125
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
PLH A SG V+ LLKH D++A D G T LH A + + LL+ A+
Sbjct: 50 PLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGAD 105
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
+ PLH A +G V+ LLK+ D+NA D G T LH A + LL+ A+
Sbjct: 81 FTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGAD 138
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI 318
PLH A G V+ LLK+ D+NA DK G TA +I
Sbjct: 116 PLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 296 LLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD 340
L+ + D+NAVD GLT LH A + + LL+ A+ D
Sbjct: 33 LIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAAD 77
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 29/58 (50%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
+ PLH A G V+ LLK D+NA DKDG T LH A + LL+ A+
Sbjct: 36 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 93
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 29/58 (50%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
+ PLH A G V+ LLK D+NA DKDG T LH A + LL+ A+
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 21/41 (51%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI 318
+ PLH A G V+ LLK D+NA DK G T AI
Sbjct: 102 YTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAI 142
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
A +G+ V L+ + D+NA DKDG T LH A + LL+ A+
Sbjct: 10 ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 29/58 (50%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
+ PLH A G V+ LLK D+NA DKDG T LH A + LL+ A+
Sbjct: 36 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 93
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 29/58 (50%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
+ PLH A G V+ LLK D+NA DKDG T LH A + LL+ A+
Sbjct: 69 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 21/41 (51%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI 318
+ PLH A G V+ LLK D+NA DK G T AI
Sbjct: 102 YTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAI 142
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
A +G+ V L+ + D+NA DKDG T LH A + LL+ A+
Sbjct: 10 ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 29/58 (50%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
+ PLH A G V+ LLK D+NA DKDG T LH A + LL+ A+
Sbjct: 48 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 105
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 29/58 (50%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
+ PLH A G V+ LLK D+NA DKDG T LH A + LL+ A+
Sbjct: 81 YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 138
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI 318
+ PLH A G V+ LLK D+NA DK G TA +I
Sbjct: 114 YTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISI 154
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
A +G+ V L+ + D+NA DKDG T LH A + LL+ A+
Sbjct: 22 ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 72
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
W PLH A G V+ LLK+ D+NA+D G T LH A + LL+ A+
Sbjct: 81 WTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGAD 138
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 271 ATATSKKWL---PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTN 327
A + W PLH + +G ++ LLK+ D+NA DK G T LH A +
Sbjct: 38 ADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVE 97
Query: 328 YLLRESANPFVVD 340
LL+ A+ +D
Sbjct: 98 VLLKYGADVNAMD 110
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 276 KKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI 318
+ + PLH A G V+ LLK+ D+NA DK G TA +I
Sbjct: 112 QGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
+ PLH A G V+ LLK+ D+NA+D DG+T LH A + LL+ A+
Sbjct: 81 YTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD 138
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH A SG V+ LLKH D++A D G T LH A + LL+ A+ +
Sbjct: 50 PLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAM 109
Query: 340 D 340
D
Sbjct: 110 D 110
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 23/44 (52%)
Query: 275 SKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI 318
S PLH A G V+ LLKH D+NA DK G TA +I
Sbjct: 111 SDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
PLH A +G V+ LLKH D+NA D +G T LH A + LL+ A+
Sbjct: 83 PLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGAD 138
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 271 ATATSKKWL---PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTN 327
A + WL PLH A +G V+ LLK+ D+NA D G T LH A +
Sbjct: 38 ADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVE 97
Query: 328 YLLRESAN 335
LL+ A+
Sbjct: 98 VLLKHGAD 105
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 267 LPHLATATSKKW---LPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI 318
L H A +K + PLH A G V+ LLK+ D+NA DK G TA +I
Sbjct: 100 LKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
PLH AA G V+ LL++ D+NAVD +G T LH A + LL+ A+
Sbjct: 38 PLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGAD 93
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
PLH A+ G V+ LLK+ D+NA D G+T L+ A + LL+ A+
Sbjct: 71 PLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGAD 126
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI 318
PL+ A G V+ LLKH D+NA DK G TA +I
Sbjct: 104 PLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 142
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 275 SKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESA 334
++ PLH A V+ LL+H D++A DK GL LH A V L++ A
Sbjct: 40 GRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 99
Query: 335 NPFVVDEVMWK 345
V D +WK
Sbjct: 100 VVNVAD--LWK 108
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 279 LPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANP 336
+PLH+ + G + + L+KH +N D T LH+A K + LL+ A+P
Sbjct: 77 VPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP 134
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 277 KWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTAL 314
K+ PLH AA G++ LL+H D ++DG T L
Sbjct: 108 KFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 145
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 275 SKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESA 334
++ PLH A V+ LL+H D++A DK GL LH A V L++ A
Sbjct: 42 GRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 101
Query: 335 NPFVVDEVMWK 345
V D +WK
Sbjct: 102 VVNVAD--LWK 110
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 279 LPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANP 336
+PLH+ + G + + L+KH +N D T LH+A K + LL+ A+P
Sbjct: 79 VPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP 136
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 277 KWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTAL 314
K+ PLH AA G++ LL+H D ++DG T L
Sbjct: 110 KFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 147
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
PLH A G V+ LLK+ D+NA D G+T LH A I + LL+ A+
Sbjct: 50 PLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGAD 105
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 22/39 (56%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI 318
PLH A G V+ LLKH D+NA DK G TA +I
Sbjct: 83 PLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 121
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKA 317
A +G+ V L+ + D+NA+D+DGLT LH A
Sbjct: 22 ARAGQDDEVRILMANGADVNALDEDGLTPLHLA 54
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 275 SKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESA 334
++ PLH A V+ LL+H D++A DK GL LH A V L++ A
Sbjct: 44 GRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 103
Query: 335 NPFVVDEVMWK 345
V D +WK
Sbjct: 104 VVNVAD--LWK 112
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 279 LPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANP 336
+PLH+ + G + + L+KH +N D T LH+A K + LL+ A+P
Sbjct: 81 VPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP 138
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 277 KWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTAL 314
K+ PLH AA G++ LL+H D ++DG T L
Sbjct: 112 KFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPL 149
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
W PLH A G V+ LLK+ D+NA D G+T LH A + LL+ A+
Sbjct: 48 WTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGAD 105
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
PLH A G V+ LLK+ D+NA D G T LH A + LL+ A+
Sbjct: 83 PLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD 138
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 24/44 (54%)
Query: 275 SKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI 318
S + PLH A G V+ LLK+ D+NA DK G TA +I
Sbjct: 111 SHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISI 154
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PL + G V LL+H INA + G TALH+A+I K V LL A+ V+
Sbjct: 155 PLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVL 214
Query: 340 DE 341
++
Sbjct: 215 NK 216
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 23/57 (40%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANP 336
PLH A G + LLKH + A + D LH A V LL +A P
Sbjct: 89 PLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP 145
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 29/60 (48%)
Query: 276 KKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
K PLH A V+ LLKH D+NA D DG T LH A + + LL+ A+
Sbjct: 46 KGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGAD 105
Score = 34.3 bits (77), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 22/39 (56%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI 318
PLH A G V+ LLKH D+NA DK G TA +I
Sbjct: 83 PLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 121
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 28/61 (45%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH A +G V LL D NA D DG T LH A + V LL + A+P
Sbjct: 73 PLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTS 132
Query: 340 D 340
D
Sbjct: 133 D 133
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 28/61 (45%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH A +G V LL D NA D DG T LH A + V LL + A+P
Sbjct: 40 PLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK 99
Query: 340 D 340
D
Sbjct: 100 D 100
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD 340
A +G V LL++ D+NA D DG T LH A + V LL + A+P D
Sbjct: 12 AENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 49/133 (36%), Gaps = 10/133 (7%)
Query: 188 AKESEEDRDCGFQDFVNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKS 247
A+ +DR +D + + + K P G +V + S DP K S
Sbjct: 12 AENGNKDR---VKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDS 68
Query: 248 DGPRRKLFTKEE------KVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNV 301
DG E K+LL++ A + K PLH A +G V LL
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKT-PLHLAAENGHKEVVKLLLSQGA 127
Query: 302 DINAVDKDGLTAL 314
D N D DG T L
Sbjct: 128 DPNTSDSDGRTPL 140
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 49/118 (41%), Gaps = 8/118 (6%)
Query: 229 DDVSEFFNSGNYDPPDKKSDGPRRKLFTKEE------KVLLNKKLPHLATATSKKWLPLH 282
D V + +G DP SDG + E K+LL+K A + + PLH
Sbjct: 18 DRVKDLLENG-ADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR-TPLH 75
Query: 283 SLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD 340
A +G V LL D NA D DG T LH A + + LL + A+P D
Sbjct: 76 YAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSD 133
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD 340
A +G V LL++ D NA D DG T LH A + + LL + A+P D
Sbjct: 12 AENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 7/94 (7%)
Query: 227 GLDDVSEFFNSGNYDPPDKKSDGPRRKLFTKEE------KVLLNKKLPHLATATSKKWLP 280
G ++ + S DP K SDG + E K+LL+K A + + P
Sbjct: 48 GHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGR-TP 106
Query: 281 LHSLAASGEFYFVDALLKHNVDINAVDKDGLTAL 314
LH A +G V LL D N D DG T L
Sbjct: 107 LHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPL 140
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 281 LHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
LH+ +G V L++ V++NA D DG T LH A V +L+ A F +
Sbjct: 74 LHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM 132
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 279 LPLHSLAAS---GEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
LPL L S GEF V ++ D + + +G+TALH A+ + +L++ N
Sbjct: 36 LPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN 95
Query: 336 PFVVDEVMW 344
D W
Sbjct: 96 VNAADSDGW 104
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 281 LHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
LH+ +G V L++ V++NA D DG T LH A V +L+ A F +
Sbjct: 74 LHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM 132
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 270 LATATSKKWLPLHSLAAS---GEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVT 326
+A K+ PL L S GEF V ++ D + + +G+TALH A+ +
Sbjct: 27 IAHGMRVKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIV 86
Query: 327 NYLLRESANPFVVDEVMW 344
+L++ N D W
Sbjct: 87 KFLVQFGVNVNAADSDGW 104
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 29/58 (50%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
W PLH A G V+ LLK+ D+NA D G+T LH A V LL+ A+
Sbjct: 48 WTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGAD 105
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
PLH A G V+ LLK+ D+NA D +G T LH A + LL+ A+
Sbjct: 83 PLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGAD 138
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 23/41 (56%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI 318
+ PLH A G V+ LLKH D+NA DK G TA +I
Sbjct: 114 FTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 154
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%)
Query: 274 TSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRES 333
T + PLH + G V LL+H D+NA K G + LH+A + LL+
Sbjct: 308 TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 367
Query: 334 ANP 336
A+P
Sbjct: 368 ASP 370
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%)
Query: 271 ATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLL 330
A T K + PLH A G+ + LL+ + NA K+GLT LH A+ + LL
Sbjct: 140 ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLL 199
Query: 331 RESANPF 337
+P
Sbjct: 200 PRGGSPH 206
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
PLH +A G D L+KH V ++A + G T LH A + +LL+ A+
Sbjct: 281 PLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD 336
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 252 RKLFTKEEKVLL-NKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDG 310
R T K+LL N P+LAT PLH A G V ALL+ + K G
Sbjct: 89 RIGHTNMVKLLLENNANPNLATTAGHT--PLHIAAREGHVETVLALLEKEASQACMTKKG 146
Query: 311 LTALHKAIIGKKQAVTNYLLRESANP 336
T LH A K V LL A+P
Sbjct: 147 FTPLHVAAKYGKVRVAELLLERDAHP 172
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI-IGKKQAVTNYLLRESANP 336
PLH A +G LL++ +NA KD T LH A IG V LL +ANP
Sbjct: 50 PLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMV-KLLLENNANP 106
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
PL+ A G V+ LLK+ D+NAVD G T LH A + LL+ A+
Sbjct: 50 PLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD 105
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI 318
+ PLH A G + LLKH D+NA DK G TA +I
Sbjct: 81 FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISI 121
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 37.4 bits (85), Expect = 0.011, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 27/56 (48%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
PLH A +G V LL+ D+NA DK+G T LH A V LL A+
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Score = 37.0 bits (84), Expect = 0.016, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 26/55 (47%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESA 334
PLH A +G V LL+ D+NA DK+G T LH A V LL A
Sbjct: 38 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 26/56 (46%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
PLH A G V+ LLKH D+NA D G T LH A + LL A+
Sbjct: 50 PLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 274 TSKKW--LPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI 318
S W PLH A G V+ LL++ D+NA DK G TA +I
Sbjct: 75 ASDSWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISI 121
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 28/58 (48%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
W PLH A G V+ LLK+ D+NA D G T LH A + LL+ A+
Sbjct: 48 WTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGAD 105
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
PLH A G V+ LLK+ D+NA D +G+T LH A + LL+ A+
Sbjct: 83 PLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGAD 138
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI 318
PLH A G V+ LLK+ D+NA DK G TA +I
Sbjct: 116 PLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 279 LPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANP 336
L +H LAA GE ++ ++ IN D++G T L A + AV +LL+ A+P
Sbjct: 21 LSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 78
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 283 SLAAS-GEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV 338
SLA S G V LL VD+N D +G T L A+ G LL A+P +
Sbjct: 90 SLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI 146
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 279 LPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANP 336
L +H LAA GE ++ ++ IN D++G T L A + AV +LL+ A+P
Sbjct: 5 LSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 283 SLAAS-GEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV 338
SLA S G V LL VD+N D +G T L A+ G LL A+P +
Sbjct: 74 SLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI 130
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 279 LPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANP 336
L +H LAA GE ++ ++ IN D++G T L A + AV +LL+ A+P
Sbjct: 3 LSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 60
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 283 SLAAS-GEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV 338
SLA S G V LL VD+N D +G T L A+ G LL A+P +
Sbjct: 72 SLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI 128
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%)
Query: 283 SLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEV 342
+ +SG+ V LL+ DIN + DGLTALH+A I + +L+ AN D
Sbjct: 46 AACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE 105
Query: 343 MW 344
W
Sbjct: 106 GW 107
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 228 LDDVSEFFNSGNY-DPPDKKSDG-----PRRKLFTKEEKVLLNKKLPHLATATSKKWLPL 281
L D ++ NSG+ D KS G K +T+ K+L+ + + W PL
Sbjct: 178 LRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPL 236
Query: 282 HSLAASGEFYFVDALLKHNVDINAVDKDGLTAL 314
H+ A G+ L+++ D+ AV+K G TA
Sbjct: 237 HAAAHWGKEEACRILVENLCDMEAVNKVGQTAF 269
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 275 SKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTAL 314
++ W+PLH+ A+ G + L+ + AV+ +G T L
Sbjct: 104 NEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPL 143
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
LH AA G + L++ D+N D DG T LH A K+ L+ + V
Sbjct: 202 ALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV 261
Query: 340 DEV 342
++V
Sbjct: 262 NKV 264
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 23/39 (58%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI 318
PLH +A G V+ LLKH D+NA DK G TA +I
Sbjct: 83 PLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISI 121
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
PLH A + V+ LLK+ D+NA+D G T LH + + LL+ A+
Sbjct: 50 PLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGAD 105
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEV 342
A +G+ V L+ + D+NA DK GLT LH A + + LL+ A+ +D +
Sbjct: 22 ARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAI 79
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 23/56 (41%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
PLH G V LLKH +N V D T L A + N LL+ A+
Sbjct: 39 PLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS 94
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESA 334
W P+H A G + L+ +N + D ++ LH+A +G + LL+ A
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 60
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 23/56 (41%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
PLH G V LLKH +N V D T L A + N LL+ A+
Sbjct: 95 PLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGAS 150
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESA 334
W P+H A G + L+ +N + D ++ LH+A +G + LL+ A
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 116
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 26/56 (46%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
PLH A G V+ LLKH D+NA D G T LH A + LL A+
Sbjct: 50 PLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI 318
PLH A G V+ LL++ D+NA DK G TA +I
Sbjct: 83 PLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISI 121
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH A +G V L+ D+NA D DG T LH A + V L+ + A+
Sbjct: 73 PLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTS 132
Query: 340 D 340
D
Sbjct: 133 D 133
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
PLH A +G V L+ D+NA D DG T LH A + V L+ + A+
Sbjct: 40 PLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD 95
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
A +G V L+++ D+NA D DG T LH A + V L+ + A+
Sbjct: 12 AENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD 62
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 54/158 (34%), Gaps = 23/158 (14%)
Query: 188 AKESEEDRDCGFQDFVNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKS 247
A+ +DR +D + + + + P G +V + S D K S
Sbjct: 12 AENGNKDR---VKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDS 68
Query: 248 DGPRRKLFT------KEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNV 301
DG R L KE LL K + S PLH A +G V L+
Sbjct: 69 DG-RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 127
Query: 302 DINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
D+N D DG T L L RE N VV
Sbjct: 128 DVNTSDSDGRTPL-------------DLAREHGNEEVV 152
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 26/56 (46%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
PLH A G V+ LLKH D+NA D G T LH A + LL A+
Sbjct: 50 PLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI 318
PLH A G V+ LL++ D+NA DK G TA +I
Sbjct: 83 PLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISI 121
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVDEVMW 344
A +GE V +K D + +++G+TALH AI G ++ ++L+ AN D W
Sbjct: 29 ALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGW 88
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 275 SKKWLPLHSLAASGEFYFVDALLKHNVDINAVD-KDGLTALHKA 317
S W PLH A+ + AL++H I A DG TA K
Sbjct: 85 SHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKC 128
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 26/56 (46%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
PLH A G V+ LLK+ D+NA G T LH A + LL+ A+
Sbjct: 50 PLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGAD 105
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 260 KVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI 318
+VLL AT + + PLH A + V+ LLKH D+NA DK G TA +I
Sbjct: 64 EVLLKNGADVNATGNTGR-TPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISI 121
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 271 ATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLL 330
A+ TS P+H A +G + L++H D+NA+D G +H AI +V ++L
Sbjct: 74 ASGTS----PVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLA 129
Query: 331 RES 333
ES
Sbjct: 130 PES 132
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 271 ATATSKKWLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLL 330
A+ TS P+H A +G + L++H D+NA+D G +H AI +V ++L
Sbjct: 72 ASGTS----PVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLA 127
Query: 331 RES 333
ES
Sbjct: 128 PES 130
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESA 334
PLH A+ G V LL++ DINAV++ G LH A + V L+ A
Sbjct: 75 PLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 129
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
PLH A G V+ LLK+ D+NA+D G T LH A + LL+ A+
Sbjct: 50 PLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD 105
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
PLH A G V+ LLK+ D+NA D G T LH A + LL+ A+
Sbjct: 83 PLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGAD 138
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI 318
PLH A +G V+ LLK+ D+NA DK G TA +I
Sbjct: 116 PLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDISI 154
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESA 334
PLH A+ G V LL++ DINAV++ G LH A + V L+ A
Sbjct: 70 PLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 124
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 27/56 (48%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
PLH A +G V LL+ D+NA DK+G T LH A V LL A+
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 27/56 (48%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
PLH A +G V LL+ D+NA DK+G T LH A V LL A+
Sbjct: 38 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 93
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 26/55 (47%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESA 334
PLH A +G V LL+ D+NA DK+G T LH A V LL A
Sbjct: 71 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRE 332
PLH A G ++ L + V +N +DK G TAL+ A G + + L +
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQ 128
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 27/61 (44%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH A G V L+ D+NA D DG T LH A + + L+ + A+
Sbjct: 73 PLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTS 132
Query: 340 D 340
D
Sbjct: 133 D 133
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
PLH A G V L+ D+NA D DG T LH A + + L+ + A+
Sbjct: 40 PLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD 95
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 46/132 (34%), Gaps = 8/132 (6%)
Query: 188 AKESEEDRDCGFQDFVNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKS 247
A+ +DR +D + + + + P G ++ + S D K S
Sbjct: 12 AENGNKDR---VKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDS 68
Query: 248 DGPR-----RKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLKHNVD 302
DG K KE LL K + S PLH A G V L+ D
Sbjct: 69 DGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD 128
Query: 303 INAVDKDGLTAL 314
+N D DG T L
Sbjct: 129 VNTSDSDGRTPL 140
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 33.9 bits (76), Expect = 0.15, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI 318
+ PLH A G V+ LLK D+NA DK G TA +I
Sbjct: 36 YTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISI 76
Score = 30.0 bits (66), Expect = 2.1, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 285 AASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
A +G+ V L+ + D+NA DKDG T LH A + LL+ A+
Sbjct: 10 ARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
PLH+ A +G V LL D+NA KDG T LH A + LL + A+
Sbjct: 12 PLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 19/38 (50%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKA 317
PLH A +G V LL D+NA KDG T H A
Sbjct: 45 PLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLA 82
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRES 333
P+H A +G + L++H D+N D G +H A+ AV ++L ES
Sbjct: 77 PVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES 130
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRES 333
P+H A +G + L++H D+N D G +H A+ AV ++L ES
Sbjct: 71 PVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAES 124
>pdb|3TIG|A Chain A, Tubulin Tyrosine Ligase
pdb|3TII|A Chain A, Tubulin Tyrosine Ligase
pdb|3TII|B Chain B, Tubulin Tyrosine Ligase
pdb|3TIN|A Chain A, Tubulin Tyrosine Ligase
Length = 380
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 6/108 (5%)
Query: 191 SEEDRDCGFQDFVNSSSSTCTQRVPPKNPKWAVYGRGLDDVSEFFNSGNYDPPDKKSDGP 250
SE D FQD + ++ C Q+ KN YGR + FF N +
Sbjct: 228 SEPYSDTNFQDMTSHLTNHCIQKEHSKN-----YGRYEEGNEMFFEEFNQYLVTSLNINL 282
Query: 251 RRKLFTKEEKVLLNKKLPHLATATSKKWLPLHSLAASGEFYFVDALLK 298
+ + K ++ L L A S K+LP HS G + VD LK
Sbjct: 283 ENSILC-QIKEIIRVCLSCLEPAISTKYLPYHSFQLFGFDFMVDKNLK 329
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV 338
PLH A G+ ++ LL DINA DK +T L A+ + LL + A+ V
Sbjct: 43 PLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 101
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFV 338
PLH A G+ ++ LL DINA DK +T L A+ + LL + A+ V
Sbjct: 38 PLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 96
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNV--DINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
W P H + G V +L + D+N + G+T LH A+ K V+ +L+ A+
Sbjct: 73 WTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS 132
Query: 336 PFVVDE 341
+ D+
Sbjct: 133 VRIKDK 138
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNV--DINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
W P H + G V +L + D+N + G+T LH A+ K V+ +L+ A+
Sbjct: 73 WTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS 132
Query: 336 PFVVDE 341
+ D+
Sbjct: 133 VRIKDK 138
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNV--DINAVDKDGLTALHKAIIGKKQAVTNYLLRESAN 335
W P H + G V +L + D+N + G+T LH A+ K V+ +L+ A+
Sbjct: 73 WTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS 132
Query: 336 PFVVDE 341
+ D+
Sbjct: 133 VRIKDK 138
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVV 339
PLH G V L+K+ D + +D +G + +H A ++ YL+ + + ++
Sbjct: 79 PLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM 138
Query: 340 DE-----VMW 344
D+ +MW
Sbjct: 139 DQNGMTPLMW 148
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 292 FVDALLKHNVDINAVDKDGLTALH-KAIIGKKQAVTNYLLRESAN 335
V+ L+ + DINA D G TALH A + +AV N LL AN
Sbjct: 133 MVEDLITADADINAADNSGKTALHWAAAVNNTEAV-NILLMHHAN 176
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 280 PLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAI 318
PLH A +G V LL+ D+NA DK G TA +I
Sbjct: 42 PLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISI 80
>pdb|2BM8|A Chain A, Cmci-N160 Apo-Structure
pdb|2BM8|B Chain B, Cmci-N160 Apo-Structure
pdb|2BM8|C Chain C, Cmci-N160 Apo-Structure
pdb|2BM8|D Chain D, Cmci-N160 Apo-Structure
pdb|2BM8|E Chain E, Cmci-N160 Apo-Structure
pdb|2BM8|F Chain F, Cmci-N160 Apo-Structure
pdb|2BM8|G Chain G, Cmci-N160 Apo-Structure
pdb|2BM8|H Chain H, Cmci-N160 Apo-Structure
pdb|2BM8|I Chain I, Cmci-N160 Apo-Structure
pdb|2BM8|J Chain J, Cmci-N160 Apo-Structure
pdb|2BM8|K Chain K, Cmci-N160 Apo-Structure
pdb|2BM8|L Chain L, Cmci-N160 Apo-Structure
pdb|2BM9|A Chain A, Cmci-N160 In Complex With Sam
pdb|2BM9|B Chain B, Cmci-N160 In Complex With Sam
pdb|2BM9|C Chain C, Cmci-N160 In Complex With Sam
pdb|2BM9|D Chain D, Cmci-N160 In Complex With Sam
pdb|2BM9|E Chain E, Cmci-N160 In Complex With Sam
pdb|2BM9|F Chain F, Cmci-N160 In Complex With Sam
pdb|2BR5|A Chain A, Cmci-N160 Sah
pdb|2BR5|B Chain B, Cmci-N160 Sah
pdb|2BR5|C Chain C, Cmci-N160 Sah
pdb|2BR5|D Chain D, Cmci-N160 Sah
pdb|2BR5|E Chain E, Cmci-N160 Sah
pdb|2BR5|F Chain F, Cmci-N160 Sah
Length = 236
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 173 NPPLVLDKPSTFPTDAKESEEDRDCGFQDF 202
+PP++ D+P +P D + +E RD G+ DF
Sbjct: 25 HPPVLTDRPRDWPLD-RWAEAPRDLGYSDF 53
>pdb|1I1Q|A Chain A, Structure Of The Cooperative Allosteric Anthranilate
Synthase From Salmonella Typhimurium
Length = 520
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 99 GKQNVVQVEAENLVPDKWKQVQEELNLTKKEKRQIALQIEFGSRVEKKKQGYLPLNSLDL 158
G + + +EA N PD + E L + +K+ +Q + +++KQ L
Sbjct: 157 GFEALPHLEAGNNCPDYCFYLAETLMVIDHQKKSTRIQASLFTASDREKQ--------RL 208
Query: 159 KEYLAYKEAKLSQLNPPL 176
LAY +L+Q PPL
Sbjct: 209 NARLAYLSQQLTQPAPPL 226
>pdb|2BR3|A Chain A, Cmci-D160 Mg
pdb|2BR3|B Chain B, Cmci-D160 Mg
pdb|2BR3|C Chain C, Cmci-D160 Mg
pdb|2BR3|D Chain D, Cmci-D160 Mg
pdb|2BR3|E Chain E, Cmci-D160 Mg
pdb|2BR3|F Chain F, Cmci-D160 Mg
pdb|2BR4|A Chain A, Cmci-D160 Mg-Sam
pdb|2BR4|B Chain B, Cmci-D160 Mg-Sam
pdb|2BR4|C Chain C, Cmci-D160 Mg-Sam
pdb|2BR4|D Chain D, Cmci-D160 Mg-Sam
pdb|2BR4|E Chain E, Cmci-D160 Mg-Sam
pdb|2BR4|F Chain F, Cmci-D160 Mg-Sam
Length = 236
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 154 NSLDLKEYLAYKEAKLSQLNPPLVLDKPSTFPTDAKESEEDRDCGFQDF 202
N LDL + E +PP++ D+P +P D + +E RD G+ DF
Sbjct: 8 NFLDLNLFRGLGEDP--AYHPPVLTDRPRDWPLD-RWAEAPRDLGYSDF 53
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 278 WLPLHSLAASGEFYFVDA---LLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESA 334
W+ +S A E V + D+NA D D T L A++ +++ + YL + A
Sbjct: 131 WIASNSSAEKSEDLIVHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKAGA 190
Query: 335 NPFV 338
+P +
Sbjct: 191 DPTI 194
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 292 FVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPFVVD 340
+D+ +D+ A + DGLTALH A+ + Q LL A+ VD
Sbjct: 98 LLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVD 146
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 24/63 (38%)
Query: 278 WLPLHSLAASGEFYFVDALLKHNVDINAVDKDGLTALHKAIIGKKQAVTNYLLRESANPF 337
W PLH G V+ LL+H +N + LH A + LL A+
Sbjct: 44 WTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN 103
Query: 338 VVD 340
V+
Sbjct: 104 AVN 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,987,505
Number of Sequences: 62578
Number of extensions: 405248
Number of successful extensions: 928
Number of sequences better than 100.0: 94
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 673
Number of HSP's gapped (non-prelim): 260
length of query: 345
length of database: 14,973,337
effective HSP length: 100
effective length of query: 245
effective length of database: 8,715,537
effective search space: 2135306565
effective search space used: 2135306565
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)