Query 019159
Match_columns 345
No_of_seqs 184 out of 1404
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 07:10:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019159.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019159hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03718 R_switched_Alx integ 100.0 4.8E-71 1.1E-75 531.8 26.9 234 110-343 28-261 (302)
2 COG0861 TerC Membrane protein 100.0 9.4E-46 2E-50 349.7 22.7 199 131-343 2-203 (254)
3 PF03741 TerC: Integral membra 100.0 2E-45 4.3E-50 332.2 20.2 175 148-343 1-175 (183)
4 TIGR03716 R_switched_YkoY inte 100.0 1.7E-43 3.7E-48 327.3 20.5 164 152-343 2-165 (215)
5 PRK14013 hypothetical protein; 100.0 9.2E-41 2E-45 324.6 22.5 223 115-343 3-293 (338)
6 TIGR03717 R_switched_YjbE inte 100.0 2.5E-38 5.4E-43 284.6 21.7 165 147-343 2-167 (176)
7 COG2899 Uncharacterized protei 100.0 6.8E-35 1.5E-39 277.5 9.5 221 113-336 2-293 (346)
8 PF04332 DUF475: Protein of un 99.9 2.5E-28 5.4E-33 233.6 6.7 174 159-336 1-246 (294)
9 PF03741 TerC: Integral membra 97.1 0.0047 1E-07 56.5 10.9 74 147-229 109-183 (183)
10 PF01914 MarC: MarC family int 97.1 0.058 1.3E-06 50.0 17.5 72 158-231 17-92 (203)
11 PRK10739 putative antibiotic t 96.9 0.11 2.5E-06 48.2 17.6 72 157-230 16-91 (197)
12 COG0861 TerC Membrane protein 96.9 0.017 3.7E-07 55.6 12.7 75 147-230 137-212 (254)
13 PRK10995 inner membrane protei 96.9 0.13 2.9E-06 48.1 18.0 71 158-230 21-95 (221)
14 TIGR00427 membrane protein, Ma 96.8 0.18 3.9E-06 46.8 18.3 74 155-230 17-94 (201)
15 TIGR03716 R_switched_YkoY inte 96.8 0.014 3.1E-07 54.9 10.9 76 146-230 98-174 (215)
16 COG1971 Predicted membrane pro 96.8 0.18 3.9E-06 47.0 17.8 82 146-230 2-88 (190)
17 TIGR03717 R_switched_YjbE inte 96.6 0.024 5.1E-07 51.7 10.8 75 147-229 100-175 (176)
18 PRK11111 hypothetical protein; 96.3 0.41 8.9E-06 45.0 17.1 71 158-230 23-97 (214)
19 PF03596 Cad: Cadmium resistan 96.2 0.1 2.2E-06 48.4 12.6 74 157-233 4-80 (191)
20 COG2095 MarC Multiple antibiot 96.1 0.27 5.8E-06 46.1 14.7 75 155-231 17-95 (203)
21 PRK10323 cysteine/O-acetylseri 96.0 0.11 2.4E-06 47.2 11.8 84 142-230 4-94 (195)
22 PRK11469 hypothetical protein; 95.7 1.6 3.4E-05 40.3 17.9 81 147-230 3-88 (188)
23 TIGR02840 spore_YtaF putative 94.1 5 0.00011 37.3 18.2 77 150-230 3-82 (206)
24 COG1280 RhtB Putative threonin 94.0 0.61 1.3E-05 43.0 10.7 78 149-230 12-94 (208)
25 TIGR03718 R_switched_Alx integ 94.0 0.22 4.7E-06 49.4 8.1 75 147-230 195-270 (302)
26 PRK10229 threonine efflux syst 93.5 0.97 2.1E-05 41.0 10.7 79 148-230 10-93 (206)
27 PRK09304 arginine exporter pro 93.3 0.98 2.1E-05 41.3 10.7 78 147-230 9-91 (207)
28 TIGR00948 2a75 L-lysine export 93.0 0.77 1.7E-05 40.7 9.1 68 157-230 5-77 (177)
29 PF01810 LysE: LysE type trans 92.0 1.3 2.7E-05 39.3 9.3 69 157-231 7-82 (191)
30 PRK10520 rhtB homoserine/homos 90.9 3 6.6E-05 37.8 10.7 75 150-230 13-94 (205)
31 TIGR00949 2A76 The Resistance 90.7 2.3 4.9E-05 37.6 9.5 66 159-230 4-76 (185)
32 PRK10958 leucine export protei 90.5 3.3 7.1E-05 38.1 10.7 73 152-230 19-98 (212)
33 COG2119 Predicted membrane pro 88.8 11 0.00025 35.3 12.6 68 159-231 17-87 (190)
34 COG1279 Lysine efflux permease 85.5 9.4 0.0002 36.1 10.3 72 150-230 12-91 (202)
35 PRK11469 hypothetical protein; 82.8 21 0.00045 32.9 11.3 98 123-229 70-184 (188)
36 PF07690 MFS_1: Major Facilita 81.6 27 0.0006 31.9 11.7 72 151-224 93-166 (352)
37 COG4300 CadD Predicted permeas 79.6 8.1 0.00017 36.4 7.4 86 147-235 5-93 (205)
38 COG1971 Predicted membrane pro 75.0 63 0.0014 30.4 11.9 75 147-229 107-186 (190)
39 TIGR00779 cad cadmium resistan 72.9 5 0.00011 37.6 4.2 73 158-234 5-80 (193)
40 TIGR00920 2A060605 3-hydroxy-3 56.2 2.7E+02 0.0059 31.9 14.1 103 122-225 97-222 (886)
41 PRK14013 hypothetical protein; 53.5 1.2E+02 0.0027 30.9 10.1 76 146-229 224-301 (338)
42 TIGR02865 spore_II_E stage II 53.1 2.5E+02 0.0053 31.4 13.3 52 292-343 197-249 (764)
43 PF11298 DUF3099: Protein of u 47.6 72 0.0016 25.6 6.1 52 176-229 11-64 (73)
44 PF02460 Patched: Patched fami 47.5 1.2E+02 0.0026 33.4 9.8 78 152-229 286-385 (798)
45 KOG2881 Predicted membrane pro 45.0 1E+02 0.0023 30.7 7.9 67 159-230 82-151 (294)
46 PRK08633 2-acyl-glycerophospho 42.9 5.2E+02 0.011 28.8 14.5 51 155-207 115-165 (1146)
47 KOG2532 Permease of the major 39.5 4.7E+02 0.01 27.3 12.7 62 156-220 141-206 (466)
48 TIGR01937 nqrB NADH:ubiquinone 39.0 2E+02 0.0044 30.1 9.3 29 107-135 44-72 (413)
49 PF02659 DUF204: Domain of unk 36.4 1.8E+02 0.004 21.8 7.6 14 210-223 54-67 (67)
50 PF04632 FUSC: Fusaric acid re 35.1 5.6E+02 0.012 27.0 12.4 97 119-227 340-436 (650)
51 PRK10489 enterobactin exporter 34.9 4.3E+02 0.0094 25.6 13.2 45 161-209 330-376 (417)
52 TIGR02840 spore_YtaF putative 34.7 3.8E+02 0.0082 24.9 11.1 71 147-227 128-206 (206)
53 PF06695 Sm_multidrug_ex: Puta 33.7 1.4E+02 0.003 25.6 6.2 45 291-335 5-53 (121)
54 TIGR00899 2A0120 sugar efflux 33.7 4E+02 0.0086 24.8 12.7 58 159-218 103-164 (375)
55 TIGR00900 2A0121 H+ Antiporter 33.1 3.8E+02 0.0083 24.5 23.7 59 150-210 99-157 (365)
56 TIGR00894 2A0114euk Na(+)-depe 32.9 5E+02 0.011 25.7 14.2 65 151-217 139-206 (465)
57 PRK10062 hypothetical protein; 32.7 4.2E+02 0.0091 26.8 10.0 18 210-227 89-106 (303)
58 PRK10019 nickel/cobalt efflux 32.3 5.1E+02 0.011 25.7 18.7 33 122-154 12-44 (279)
59 PRK05349 Na(+)-translocating N 32.0 2.8E+02 0.0061 29.0 9.0 29 107-135 46-74 (405)
60 PRK11902 ampG muropeptide tran 31.1 5E+02 0.011 25.2 13.2 67 152-220 103-172 (402)
61 TIGR00844 c_cpa1 na(+)/h(+) an 29.1 9.2E+02 0.02 27.6 13.2 70 152-222 258-339 (810)
62 TIGR00918 2A060602 The Eukaryo 26.2 8.8E+02 0.019 28.8 12.6 74 152-226 465-561 (1145)
63 PRK04375 protoheme IX farnesyl 25.7 6.2E+02 0.013 24.5 10.8 25 109-133 85-109 (296)
64 PF05609 LAP1C: Lamina-associa 23.8 2.2E+02 0.0048 30.3 6.7 31 90-120 190-221 (465)
65 PF08507 COPI_assoc: COPI asso 23.6 4.7E+02 0.01 22.4 12.7 46 181-226 57-102 (136)
66 PF02535 Zip: ZIP Zinc transpo 22.8 6.4E+02 0.014 23.7 15.1 22 210-231 268-289 (317)
67 PRK01024 Na(+)-translocating N 21.8 5.9E+02 0.013 27.5 9.3 33 103-135 40-72 (503)
68 PF13748 ABC_membrane_3: ABC t 21.5 72 0.0016 31.0 2.5 43 98-140 182-230 (237)
69 TIGR00711 efflux_EmrB drug res 21.2 7.8E+02 0.017 24.0 12.0 49 160-210 107-155 (485)
70 PF04842 DUF639: Plant protein 20.9 1.6E+02 0.0034 32.8 5.1 35 195-230 519-553 (683)
71 TIGR00901 2A0125 AmpG-related 20.9 7E+02 0.015 23.4 21.2 59 149-209 89-147 (356)
72 TIGR00880 2_A_01_02 Multidrug 20.7 3.9E+02 0.0084 20.3 13.7 71 150-222 58-130 (141)
73 COG4239 ABC-type uncharacteriz 20.6 9E+02 0.02 24.6 9.8 72 100-171 124-198 (341)
No 1
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=100.00 E-value=4.8e-71 Score=531.82 Aligned_cols=234 Identities=45% Similarity=0.781 Sum_probs=229.1
Q ss_pred ccchhhhHhHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHH
Q 019159 110 GRESYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAG 189 (345)
Q Consensus 110 ~~~~~k~a~~~s~~wv~lAllFg~~v~~~~g~~~a~eflt~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlg 189 (345)
++.+.|||..||++|+++|++||+++|++.|++.+.||+|||++|++||+||+|||++++++|++|+++|||+|+||++|
T Consensus 28 ~~~~~kea~~ws~~~v~la~~F~~~i~~~~g~~~~~~f~tg~llE~~LSvDN~fV~~~if~~f~vP~~~q~rvL~~Gi~g 107 (302)
T TIGR03718 28 HVVSFKEALLWSAFWVSLALLFGGGVWFYLGGEAALEFLTGYLIEKSLSVDNLFVFLLIFSYFAVPREYQHRVLFWGILG 107 (302)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhccCCCCccchhHHHHhhhcccccccccCCceeEeeCCccc
Q 019159 190 AIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRK 269 (345)
Q Consensus 190 AvvmRiIfI~lg~~Ll~~f~wI~~igGafLly~g~k~~~~~eee~d~~~n~ivr~~~k~~pvt~~~~G~~F~v~~~g~~~ 269 (345)
|++||++|+++|++++++|+|++++||+||+|+|+|++++++||+|+++|+.+|++||++|++++|+|++|++++||++.
T Consensus 108 AlvlR~i~i~~g~~Li~~f~wi~~ifG~fLi~~a~k~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~f~~~~~g~~~ 187 (302)
T TIGR03718 108 ALVLRAIFIALGAALIEQFHWVLYIFGAFLLYTGIKMLFEGDEEDDPENNPLVRLLRRVLPVTDKYHGDRFFVRENGKRY 187 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcccccCccccHHHHHHHhhcCCCccccCCceeeeecCcee
Confidence 99999999999999999999999999999999999999988777778889999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhhcchHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhh
Q 019159 270 ATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQVKVYWVSIN 343 (345)
Q Consensus 270 aTpl~~vvl~IE~~DlvFSlDSVpAafAIT~d~fIV~~gnifAIlgLRsLyflla~ll~rf~yLk~gla~ILi~ 343 (345)
+||++.++++||++|++||+|||||++|+|+||++|++||+||++|+|++|+++++++||||||||+++++|.+
T Consensus 188 ~tpl~~vli~Ie~~DlvFslDSIpAi~aiT~d~~iV~tsnifaIlgLR~lyf~l~~ll~rf~~L~~~~a~iL~f 261 (302)
T TIGR03718 188 ATPLFLVLVLVETTDLIFAVDSIPAIFAITQDPFIVFTSNIFAILGLRSLYFLLAGLLERFHYLKYGLAVILVF 261 (302)
T ss_pred cCcHHHHHHHHHHHHHHHhhccHHHHHHhhcCCeEEehHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875
No 2
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.4e-46 Score=349.67 Aligned_cols=199 Identities=25% Similarity=0.382 Sum_probs=177.1
Q ss_pred HHHHHHH--HhChhhHHHHHHHHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 019159 131 FGLGVGF--IEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF 208 (345)
Q Consensus 131 Fg~~v~~--~~g~~~a~eflt~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f 208 (345)
|+...|+ ...+..|.+++|++++|++||+||++|+++++++ +|++||||+|+||+.+|++||+++++.++++++.+
T Consensus 2 f~~~~~~~~~~~~~~~~~l~tl~~lE~vL~iDN~iviai~~~~--Lp~~qr~ral~~Gl~~A~v~R~~ll~~~s~Ll~l~ 79 (254)
T COG0861 2 FGIALYMEWLADPAAWVALLTLILLEIVLGIDNAIVIAILASK--LPPKQRKKALFIGLAGALVLRIILLASISWLLTLT 79 (254)
T ss_pred chHHHHHHHhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444443 3456677899999999999999999999999996 89999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhhhccCCCCccchhHHHHhhhcccccccccCCceeEeeCCcc-ccchHHHHHHHHHHHHHHh
Q 019159 209 EAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMR-KATPLLLTVAVIELSDIAF 287 (345)
Q Consensus 209 ~wI~~igGafLly~g~k~~~~~eee~d~~~n~ivr~~~k~~pvt~~~~G~~F~v~~~g~~-~aTpl~~vvl~IE~~DlvF 287 (345)
+|++++||.+|+|+++||+.+++++. .|+.++.. ++++|++++. +++. ..||+|.++.+||++|++|
T Consensus 80 ~~l~~~fg~~L~~~~~~ll~~~~~~~-------~k~~~~~~---~~~~~~~~~~--~~~~~~~~~f~~ai~~I~i~D~vF 147 (254)
T COG0861 80 QPLLYIFGLYLLWRDIKLLLGGLFLL-------FKATKELH---ERLEGEEFFV--NGKLKKATPFWGAIIQIELADLVF 147 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhHH-------HHHHHHHh---hhhccccccc--cccccccCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999875543 23344443 6788888876 4443 7899999999999999999
Q ss_pred hcchHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhh
Q 019159 288 AVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLISEGMADLEYLQVKVYWVSIN 343 (345)
Q Consensus 288 SlDSVpAafAIT~d~fIV~~gnifAIlgLRsLyflla~ll~rf~yLk~gla~ILi~ 343 (345)
|+|||||++|+|+|+++|++|+++|+++||++|+.+++++||||+++|+++++|.+
T Consensus 148 SlDSV~Aa~g~~~~~~im~~a~i~aI~~m~~aa~~l~~ll~r~p~l~~~~~~iL~~ 203 (254)
T COG0861 148 SLDSVIAAVGMAGHPFVMVTAVIFAILVMRFAAFLLARLLERHPTLKYLALVILLF 203 (254)
T ss_pred hhhHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998875
No 3
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=100.00 E-value=2e-45 Score=332.22 Aligned_cols=175 Identities=35% Similarity=0.518 Sum_probs=157.1
Q ss_pred HHHHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 019159 148 FAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLF 227 (345)
Q Consensus 148 lt~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f~wI~~igGafLly~g~k~~ 227 (345)
+|++++|++||+||++|+++++++ +|+++|+|+++||+.+|+++|++|+++++++++.|+|++++||+||+|+++|++
T Consensus 1 ltl~~lE~~Ls~DN~~vi~~~~~~--lp~~~r~kal~~Gi~~A~~lR~~~i~~~~~ll~~~~~i~~igG~~Ll~~a~k~~ 78 (183)
T PF03741_consen 1 LTLVLLEIVLSIDNAFVIAMIFRK--LPPEQRRKALFWGIIGAIVLRIIFIFLASWLLSIFPWILLIGGLFLLYIAIKLL 78 (183)
T ss_pred CchhhhhHHHHhhHHHHHHHHHhC--CCHHHhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999996 999999999999999999999999999999998889999999999999999999
Q ss_pred hhccCCCCccchhHHHHhhhcccccccccCCceeEeeCCccccchHHHHHHHHHHHHHHhhcchHHHHHHhcCChHHHHH
Q 019159 228 ASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFS 307 (345)
Q Consensus 228 ~~~eee~d~~~n~ivr~~~k~~pvt~~~~G~~F~v~~~g~~~aTpl~~vvl~IE~~DlvFSlDSVpAafAIT~d~fIV~~ 307 (345)
++++ ++|+ ++...++.++..|. ....++.++++||++|++||+|||||++|+|+|++++++
T Consensus 79 ~~~~-~~d~-~~~~~~~~~~~~~~-----------------~~~~~~~~v~~I~~~DlvfSlDSV~a~~~it~~~~iv~~ 139 (183)
T PF03741_consen 79 HEER-DEDP-ENAEVEEEKKFFPV-----------------SKSSLWLAVIQIELADLVFSLDSVLAAVGITDDFFIVIT 139 (183)
T ss_pred Hhcc-cccc-chhhhhhhhccccc-----------------hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHH
Confidence 9876 3333 44444444333222 224699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhh
Q 019159 308 SNLFAILGLRSLFTLISEGMADLEYLQVKVYWVSIN 343 (345)
Q Consensus 308 gnifAIlgLRsLyflla~ll~rf~yLk~gla~ILi~ 343 (345)
|+++|+++||++|+.++++++|||+++++++.+|.+
T Consensus 140 g~i~si~~m~~~~~~~~~~l~~~p~l~~~~~~~L~~ 175 (183)
T PF03741_consen 140 GNIISILLMRFLSFLLAKLLERFPYLKYLAAAILGF 175 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999876
No 4
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=100.00 E-value=1.7e-43 Score=327.35 Aligned_cols=164 Identities=27% Similarity=0.386 Sum_probs=147.8
Q ss_pred HHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhcc
Q 019159 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEE 231 (345)
Q Consensus 152 lLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f~wI~~igGafLly~g~k~~~~~e 231 (345)
++|++||+||++|+++++++ +|+++|||+++||+.||+++|++|+++++++++ ++|++++||+||+|+++|++++++
T Consensus 2 ~lE~vLS~DN~~via~~~~~--LP~~~r~~al~~Gi~gAivlR~i~i~~~~~Ll~-~~~l~~iGG~~Ll~~~~k~l~~~~ 78 (215)
T TIGR03716 2 ILEGLLSADNALVLAVMVKH--LPEKQRKKALFYGLIGAYVFRFIALFLASFLIK-FWWIKAIGALYLLYLAIKHFRKKK 78 (215)
T ss_pred chhHHHHhhHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 68999999999999999995 999999999999999999999999999999995 679999999999999999999875
Q ss_pred CCCCccchhHHHHhhhcccccccccCCceeEeeCCccccchHHHHHHHHHHHHHHhhcchHHHHHHhcCChHHHHHHHHH
Q 019159 232 DDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLF 311 (345)
Q Consensus 232 ee~d~~~n~ivr~~~k~~pvt~~~~G~~F~v~~~g~~~aTpl~~vvl~IE~~DlvFSlDSVpAafAIT~d~fIV~~gnif 311 (345)
++++.++++ .+...+.++.++++||++|++||+|||||++|+|+|++++++||++
T Consensus 79 ~~~~~~~~~-------------------------~~~~~~~f~~av~~I~~~DlvFSlDSV~A~~git~~~~ii~~g~~~ 133 (215)
T TIGR03716 79 KGKEDEEAE-------------------------KKKAHSGFWRTVLKVELMDIAFSVDSILAAVALSGQFWVVFLGGII 133 (215)
T ss_pred ccccccccc-------------------------cccccchHHHHHHHHHHHHHHHHhhhHHHHHHhccChHHHHHHHHH
Confidence 544332221 0011246789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhh
Q 019159 312 AILGLRSLFTLISEGMADLEYLQVKVYWVSIN 343 (345)
Q Consensus 312 AIlgLRsLyflla~ll~rf~yLk~gla~ILi~ 343 (345)
|+++||++|+.++++++||||+||+++.+|.+
T Consensus 134 sIl~lr~~s~~l~~li~r~p~L~~~~~~iL~~ 165 (215)
T TIGR03716 134 GILIMRFAATIFVKLLERFPELETAAFLLIGW 165 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998876
No 5
>PRK14013 hypothetical protein; Provisional
Probab=100.00 E-value=9.2e-41 Score=324.57 Aligned_cols=223 Identities=21% Similarity=0.241 Sum_probs=182.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHH-HH
Q 019159 115 TSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VF 193 (345)
Q Consensus 115 k~a~~~s~~wv~lAllFg~~v~~~~g~~~a~eflt~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAv-vm 193 (345)
.+.++||+.+++++++.+++++ |.+.....+++.++|++||+||++|+|.+.++ +|++||+|+|+||+++|+ +|
T Consensus 3 ~~~f~~s~~~t~~~l~~~~~~g---~~~~~~~~~~L~vLEisLsfDNaIvnA~vl~~--m~~~wq~~fl~~Gi~iAvFgm 77 (338)
T PRK14013 3 LRYFRWSFIVTVIGLVLAAWLG---GLSALFIVAILAVLEISLSFDNAVVNATVLKR--MSPKWQKRFLTWGILIAVFGM 77 (338)
T ss_pred HHHHhHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhh--CCHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999998765 34556667788999999999999999999995 999999999999999998 99
Q ss_pred HHHHHHHHHHHHHh------------------------hhHHHHHHHHHHHHHHHHhhhhccCCCCccchhHHHHhhhcc
Q 019159 194 RLSLILLGTATLQR------------------------FEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFI 249 (345)
Q Consensus 194 RiIfI~lg~~Ll~~------------------------f~wI~~igGafLly~g~k~~~~~eee~d~~~n~ivr~~~k~~ 249 (345)
|++|+++.+++.+. ++.+..+||+||++++.++++|+|+|.+|.. ++.|-++|.-
T Consensus 78 Rlvfp~~iv~i~a~~~p~~~~~~a~s~~~~Y~~~l~~ah~~I~~fGG~FLlmvfL~f~fd~ek~~~Wl~-~iE~~~~~~g 156 (338)
T PRK14013 78 RLVFPLLIVAVAAGLGPIEALKLALNDPDEYAEILTDAHPQIAAFGGTFLLMVFLNFFFDEEKDVHWLG-WIERPLAKLG 156 (338)
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHcCCchhHHHHHhhhhHHHHHHHHHHHHHHHHHHhcCcCCCccchh-HHHHHHHHhc
Confidence 99999999999874 3358899999999999999999988888743 3333333332
Q ss_pred cccc---------------cccCC-----------------------ceeEe--eC-CccccchHHHHHHHHHHHHHHhh
Q 019159 250 PVTT---------------YYDGN-----------------------RFFTN--QD-GMRKATPLLLTVAVIELSDIAFA 288 (345)
Q Consensus 250 pvt~---------------~~~G~-----------------------~F~v~--~~-g~~~aTpl~~vvl~IE~~DlvFS 288 (345)
++.. ..+.+ +++-. ++ .+...+..+..++++|++|++||
T Consensus 157 ~~~~~~v~~~l~~l~~~~~~~~~~~~~~~~~a~~~G~~~y~~v~~~~~~~~~~~~~~~~~~~k~g~~~fl~lE~~D~~FS 236 (338)
T PRK14013 157 KLDGISVIVALVLLLIFSLLLPADEALTVLIAGLLGLLTYLIVEGLGGLFEEEEEDAMTAVGKAGLGGFLYLEVLDASFS 236 (338)
T ss_pred CccchHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHH
Confidence 2110 00100 01100 01 12234678899999999999999
Q ss_pred cchHHHHHHhcCChHHHHHHHHHHHHHHHHH--HHHHHHHHHhhhhHHHHHHHHhhh
Q 019159 289 VDSIPAVFGVTRDPFIVFSSNLFAILGLRSL--FTLISEGMADLEYLQVKVYWVSIN 343 (345)
Q Consensus 289 lDSVpAafAIT~d~fIV~~gnifAIlgLRsL--yflla~ll~rf~yLk~gla~ILi~ 343 (345)
+|||||+||+|+|+++|++||++|++++|++ |++..++++||+|||||+..++..
T Consensus 237 ~DsV~aafAiT~d~~II~~g~~igil~lRslt~yfv~~g~L~~f~yLe~ga~~~I~~ 293 (338)
T PRK14013 237 FDGVIGAFAITNDIFIIALGLGIGAMFVRSLTIYLVEKGTLDEYVYLEHGAHYAIGA 293 (338)
T ss_pred hccchhheeecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccHHHHHHH
Confidence 9999999999999999999999999999999 999999999999999998877654
No 6
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=100.00 E-value=2.5e-38 Score=284.62 Aligned_cols=165 Identities=22% Similarity=0.262 Sum_probs=151.0
Q ss_pred HHHHHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 019159 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL 226 (345)
Q Consensus 147 flt~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f~wI~~igGafLly~g~k~ 226 (345)
+++..++|.+||+||++|++++++ ++|+++|||++.||+.+|+++|++|+++|.++++ ++|+++.||++|+|+|+||
T Consensus 2 ~~~li~le~vLs~DN~~vi~~~t~--~lp~~~r~~~~~~G~~~A~vlr~if~~~G~~ll~-~~~~~iaGGllLl~ia~~m 78 (176)
T TIGR03717 2 LLQIIAIDLVLGGDNAVVIALAAR--NLPAHQRKKAIFWGTAGAIVLRILLTAVAVYLLA-IPFLKLIGGLLLLWIGWKL 78 (176)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999887 5999999999999999999999999999999996 7999999999999999999
Q ss_pred hhhccCCCCccchhHHHHhhhcccccccccCCceeEeeCCccccchHHHHHHHHHHHHHHhhcchHHHHHHhcC-ChHHH
Q 019159 227 FASEEDDTDLSDNFIVKTCQRFIPVTTYYDGNRFFTNQDGMRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTR-DPFIV 305 (345)
Q Consensus 227 ~~~~eee~d~~~n~ivr~~~k~~pvt~~~~G~~F~v~~~g~~~aTpl~~vvl~IE~~DlvFSlDSVpAafAIT~-d~fIV 305 (345)
+++++++++.++ ...||+|.++++||++|++||+|||||++|+|+ |++++
T Consensus 79 l~~~~~~~~~~~-----------------------------~~~~~~~~~v~~I~~~D~~fS~DsV~a~~~~~~~~~~li 129 (176)
T TIGR03717 79 LLEEEEEQGGDV-----------------------------KGSTTLWAAIKTIVIADAVMSLDNVLAVAGAAHGHLGLL 129 (176)
T ss_pred Hhcccccccccc-----------------------------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence 987654433221 114799999999999999999999999999997 78899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhh
Q 019159 306 FSSNLFAILGLRSLFTLISEGMADLEYLQVKVYWVSIN 343 (345)
Q Consensus 306 ~~gnifAIlgLRsLyflla~ll~rf~yLk~gla~ILi~ 343 (345)
++|.++|++.||+.+..++++++||||+||+++.+|.+
T Consensus 130 ~~g~~i~i~~m~~~s~~~~~~~~~~p~l~~~~~~~L~~ 167 (176)
T TIGR03717 130 IFGLLLSIPIIVWGSTLILKLMDRFPWIIYIGAALLGY 167 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998876
No 7
>COG2899 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=6.8e-35 Score=277.49 Aligned_cols=221 Identities=21% Similarity=0.261 Sum_probs=177.5
Q ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHhChhhHHHHHH---HHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHH
Q 019159 113 SYTSSVKTVAFCVSTAVAFGLGVGFIEGASKASEFFA---GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAG 189 (345)
Q Consensus 113 ~~k~a~~~s~~wv~lAllFg~~v~~~~g~~~a~eflt---~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlg 189 (345)
+..+.++||+..+.++++.++|.+|.+|...+..++- +.++|+|||.||++|+|.+.+. +.+.||||+|+|||++
T Consensus 2 ~~~r~F~~s~i~Tvi~L~~a~w~gy~~~G~~~~~l~i~~vLavLEiSLSFDNAIvNA~iLk~--MS~~Wqk~FLT~GIlI 79 (346)
T COG2899 2 TAFRYFGWSFIVTVIALALAAWLGYEYGGTMWTALFICAVLAVLEISLSFDNAIVNAAILKD--MSPFWQKRFLTWGILI 79 (346)
T ss_pred chHhhcchHHHHHHHHHHHHHHHhHhhcCchHHHHHHHHHHHHhhhheechHHHhhHHHHHh--ccHHHHHHHHHHHHHH
Confidence 3567899999999999999999999887766655443 4689999999999999999996 9999999999999999
Q ss_pred HH-HHHHHHHHHHHHHHHh------------------------hhHHHHHHHHHHHHHHHHhhhhccCCCCccchhHHHH
Q 019159 190 AI-VFRLSLILLGTATLQR------------------------FEAVNLVLAGILLFSSFKLFASEEDDTDLSDNFIVKT 244 (345)
Q Consensus 190 Av-vmRiIfI~lg~~Ll~~------------------------f~wI~~igGafLly~g~k~~~~~eee~d~~~n~ivr~ 244 (345)
|+ +||++|+++++++-.. ++.|..+||.||++++.++++|.|+|.+|-+ |+.+-
T Consensus 80 AVFGMRlvFPl~IV~vaa~~~pi~a~~lAl~~P~~Y~~ii~~aH~~IAAFGG~FLlMv~L~fffd~erd~hWl~-~iE~~ 158 (346)
T COG2899 80 AVFGMRLVFPLVIVAVAAGLDPIRAMKLALEPPESYAKIITDAHPQIAAFGGTFLLMVFLDFFFDHERDVHWLK-WIERP 158 (346)
T ss_pred HHHhhHHHHHHHHHHHhcCCChHHHHHHHccCcHHHHHHHHhcCchhhhhhhHHHHHHHHHHhcCccccchhhh-hHHHH
Confidence 98 8999999999988764 4558899999999999999999888887642 33333
Q ss_pred hhhcccccc-----------------cccCC--ceeEe-------------eCC---------ccccchHHHHHHHHHHH
Q 019159 245 CQRFIPVTT-----------------YYDGN--RFFTN-------------QDG---------MRKATPLLLTVAVIELS 283 (345)
Q Consensus 245 ~~k~~pvt~-----------------~~~G~--~F~v~-------------~~g---------~~~aTpl~~vvl~IE~~ 283 (345)
+.|+-++.. ..+++ .++.. .+| ....+..+.+++|+|+.
T Consensus 159 ~arig~~~~v~vi~~~~lll~~s~~l~~~~~~~~~l~Agl~GlltyLlV~~vg~l~~~~~~~~~~a~kaGla~FLYLEVL 238 (346)
T COG2899 159 LARIGRLGGVEVIVAIALLLLFSRLLTASADRGTVLIAGLLGLLTYLLVDGVGGLLDATQQAMQAAGKAGLAAFLYLEVL 238 (346)
T ss_pred HHHhcCCCCchhHHHHHHHHHHHHHhcCccccceehHHHHHHHHHHHHHHHhhhHhhcCHHHHhhhhhcchhHHHHHHHH
Confidence 333222110 01221 12210 011 11234688999999999
Q ss_pred HHHhhcchHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhHHHH
Q 019159 284 DIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLI--SEGMADLEYLQVK 336 (345)
Q Consensus 284 DlvFSlDSVpAafAIT~d~fIV~~gnifAIlgLRsLyfll--a~ll~rf~yLk~g 336 (345)
|.+||+|+|+++||+|+||+||..|+.++.+.+||+.-++ ++.+++|+|||||
T Consensus 239 DAsFSFDGViGAFAiT~d~vIIalGLgIGAmfVRSiTi~LV~kgTL~~y~yLEHG 293 (346)
T COG2899 239 DASFSFDGVIGAFAITTDPVIIALGLGIGAMFVRSITIYLVEKGTLDEYVYLEHG 293 (346)
T ss_pred hhhccccceeeeeeeccCchhheeccchhheeeeeeEEEEEecCcHHHHHHHhcc
Confidence 9999999999999999999999999999999999995544 8999999999998
No 8
>PF04332 DUF475: Protein of unknown function (DUF475); InterPro: IPR007427 This entry contains proteins that are predicted to be an integral membrane proteins with multiple transmembrane domains.
Probab=99.95 E-value=2.5e-28 Score=233.65 Aligned_cols=174 Identities=20% Similarity=0.284 Sum_probs=138.2
Q ss_pred hhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh------------------------hhHHHH
Q 019159 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQR------------------------FEAVNL 213 (345)
Q Consensus 159 vDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAv-vmRiIfI~lg~~Ll~~------------------------f~wI~~ 213 (345)
.||++|+|.+.+. +.+.||||+|+|||++|+ +||++|+++++++..+ ++.+..
T Consensus 1 FDNAVVNA~vLk~--Ms~~Wq~~FLtwGIlIAVFGMRlvFPllIV~~~a~lgp~ea~~lA~~~p~~Y~~~l~~ah~~Iaa 78 (294)
T PF04332_consen 1 FDNAVVNATVLKR--MSPFWQRRFLTWGILIAVFGMRLVFPLLIVWVTAGLGPIEALRLALNDPPQYAEILEDAHPQIAA 78 (294)
T ss_pred CCchhhhHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCHHHHHHHHhCCHHHHHHHHHhhhHHHHH
Confidence 5999999999995 999999999999999999 8999999999998874 345788
Q ss_pred HHHHHHHHHHHHhhhhccCCCCccchhHHHHhhhcccccc---------------ccc--CC---ceeE-----------
Q 019159 214 VLAGILLFSSFKLFASEEDDTDLSDNFIVKTCQRFIPVTT---------------YYD--GN---RFFT----------- 262 (345)
Q Consensus 214 igGafLly~g~k~~~~~eee~d~~~n~ivr~~~k~~pvt~---------------~~~--G~---~F~v----------- 262 (345)
+||.||+++++++++++++ .+|-. ++.|.+.|.-++.. .+. .+ .+..
T Consensus 79 FGG~FLlmvfL~f~f~~~k-~~Wl~-~iE~~l~~~g~~~~~~~~v~l~~l~~~~~~l~~~~~~~~~~l~agi~G~~~f~~ 156 (294)
T PF04332_consen 79 FGGMFLLMVFLDFFFDEEK-VHWLR-WIERPLAKLGKLDAISVVVALLALLIIAVFLAASADEAPTVLLAGILGLVTFLI 156 (294)
T ss_pred HhHHHHHHHHHheeecCCc-ceeeh-HHHHHHHHcCCcccchhHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999877 66532 23333333222110 001 00 0110
Q ss_pred ---------eeCC-----ccccchHHHHHHHHHHHHHHhhcchHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHH--HHH
Q 019159 263 ---------NQDG-----MRKATPLLLTVAVIELSDIAFAVDSIPAVFGVTRDPFIVFSSNLFAILGLRSLFTLI--SEG 326 (345)
Q Consensus 263 ---------~~~g-----~~~aTpl~~vvl~IE~~DlvFSlDSVpAafAIT~d~fIV~~gnifAIlgLRsLyfll--a~l 326 (345)
.+++ +...+..+..++|+|+.|.+||+|+|+++||+|+|++||.+|+.+|+|.+|++.-.+ .+.
T Consensus 157 v~~l~~~~e~~~~~~~~~~~~~k~g~~~FlYLEVLDASFSfDGVIGAFAiT~~i~iI~iGLgIGAmfVRSlTi~lV~kgt 236 (294)
T PF04332_consen 157 VNGLGSLFEAEEEPTAAAVAVGKAGLSGFLYLEVLDASFSFDGVIGAFAITNNIFIIAIGLGIGAMFVRSLTIYLVEKGT 236 (294)
T ss_pred HHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhhhccccceeehhhhhcchHHHHHhcccceeeeeeeeEEeEecCc
Confidence 1111 124567899999999999999999999999999999999999999999999996666 589
Q ss_pred HHhhhhHHHH
Q 019159 327 MADLEYLQVK 336 (345)
Q Consensus 327 l~rf~yLk~g 336 (345)
+++|+|||||
T Consensus 237 L~~Y~YLEhG 246 (294)
T PF04332_consen 237 LSEYRYLEHG 246 (294)
T ss_pred HHHhHHHhcc
Confidence 9999999998
No 9
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=97.15 E-value=0.0047 Score=56.48 Aligned_cols=74 Identities=24% Similarity=0.273 Sum_probs=61.2
Q ss_pred HHHHHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 019159 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225 (345)
Q Consensus 147 flt~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAv-vmRiIfI~lg~~Ll~~f~wI~~igGafLly~g~k 225 (345)
..+..+.+.+.|+||+...+.+.+ +--....|...|+ +||...-.+. .++++|+|+.+.++++|.|+|.|
T Consensus 109 v~~I~~~DlvfSlDSV~a~~~it~--------~~~iv~~g~i~si~~m~~~~~~~~-~~l~~~p~l~~~~~~~L~~ig~~ 179 (183)
T PF03741_consen 109 VIQIELADLVFSLDSVLAAVGITD--------DFFIVITGNIISILLMRFLSFLLA-KLLERFPYLKYLAAAILGFIGVK 179 (183)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhh--------hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678899999999998888773 4467888998888 7887765554 47889999999999999999999
Q ss_pred hhhh
Q 019159 226 LFAS 229 (345)
Q Consensus 226 ~~~~ 229 (345)
|+.+
T Consensus 180 li~~ 183 (183)
T PF03741_consen 180 LILE 183 (183)
T ss_pred HhhC
Confidence 9753
No 10
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=97.08 E-value=0.058 Score=50.00 Aligned_cols=72 Identities=17% Similarity=0.240 Sum_probs=63.5
Q ss_pred chhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHhhhhcc
Q 019159 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE----AVNLVLAGILLFSSFKLFASEE 231 (345)
Q Consensus 158 SvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f~----wI~~igGafLly~g~k~~~~~e 231 (345)
-..|+.++....+. .++++|+|+..-..+.|.+.=.+|.++|..+++.|. -....||+.|...|++|+..+.
T Consensus 17 P~g~ip~f~~lt~~--~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fgIsl~af~IaGGiiL~~ia~~ml~~~~ 92 (203)
T PF01914_consen 17 PIGNIPIFLSLTKG--MSPKERRRIARRASIIAFIILLIFAFFGQLILNFFGISLPAFRIAGGIILFLIALEMLFGSP 92 (203)
T ss_pred HHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 46788899999885 899999999999999999999999999999997653 5889999999999999998654
No 11
>PRK10739 putative antibiotic transporter; Provisional
Probab=96.89 E-value=0.11 Score=48.17 Aligned_cols=72 Identities=18% Similarity=0.259 Sum_probs=62.7
Q ss_pred hchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhhhhc
Q 019159 157 LSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE 230 (345)
Q Consensus 157 LSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f----~wI~~igGafLly~g~k~~~~~ 230 (345)
=-+.|+-+|..+++. .++++|+|+..-..+.|.+.=++|.+.|..+++.| +-....||+.|...|++|+.++
T Consensus 16 nPig~ipiflslt~~--~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fGIsl~afrIAGGilL~~ial~ml~~~ 91 (197)
T PRK10739 16 DPLGNLPIFMSVLKH--LEPKRRRAIMIRELLIALLVMLVFLFAGEKILAFLNLRTETVSISGGIILFLIAIKMIFPS 91 (197)
T ss_pred hHhhHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 346788999999885 89999999999999999888889999999999765 3588999999999999999765
No 12
>COG0861 TerC Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
Probab=96.89 E-value=0.017 Score=55.64 Aligned_cols=75 Identities=24% Similarity=0.283 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 019159 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225 (345)
Q Consensus 147 flt~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAv-vmRiIfI~lg~~Ll~~f~wI~~igGafLly~g~k 225 (345)
..+..+++.+-|+||+.-..-+.+ +.-+...|...|+ +||...-.+. .++++|+++.+.+.++|+|+|.|
T Consensus 137 i~~I~i~D~vFSlDSV~Aa~g~~~--------~~~im~~a~i~aI~~m~~aa~~l~-~ll~r~p~l~~~~~~iL~~IG~k 207 (254)
T COG0861 137 IIQIELADLVFSLDSVIAAVGMAG--------HPFVMVTAVIFAILVMRFAAFLLA-RLLERHPTLKYLALVILLFIGVK 207 (254)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHHHHH-HHHHHchHHHHHHHHHHHHHHHH
Confidence 444678999999999998888775 3468999999998 7888765554 58889999999999999999999
Q ss_pred hhhhc
Q 019159 226 LFASE 230 (345)
Q Consensus 226 ~~~~~ 230 (345)
|+.++
T Consensus 208 li~~~ 212 (254)
T COG0861 208 LILEG 212 (254)
T ss_pred HHHhh
Confidence 99876
No 13
>PRK10995 inner membrane protein; Provisional
Probab=96.86 E-value=0.13 Score=48.07 Aligned_cols=71 Identities=11% Similarity=0.181 Sum_probs=62.3
Q ss_pred chhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhhhhc
Q 019159 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE 230 (345)
Q Consensus 158 SvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f----~wI~~igGafLly~g~k~~~~~ 230 (345)
=+.|+-+|..+++. .++++|+|+-....+.|.+.=++|.+.|..+++-| +.....||++|++.|++|++++
T Consensus 21 P~g~~pif~~lt~~--~~~~~r~~ia~~~~~~a~~ill~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~ml~~~ 95 (221)
T PRK10995 21 PLTTVALFLGLSGN--MTPEERNRQALMASVYVFAIMMVAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFRMLFPQ 95 (221)
T ss_pred hhhhHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 35688889988885 79999999999999999988889999999999754 4689999999999999999764
No 14
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=96.81 E-value=0.18 Score=46.81 Aligned_cols=74 Identities=15% Similarity=0.321 Sum_probs=64.0
Q ss_pred HHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhhhhc
Q 019159 155 QSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE 230 (345)
Q Consensus 155 ~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f----~wI~~igGafLly~g~k~~~~~ 230 (345)
+.=-+.|+-+|....+. .++++|+|......+.|.+.=++|.+.|..+++.| +-....||+.|...|++|+..+
T Consensus 17 iinPig~ipvfl~lt~~--~~~~~r~~ia~~~~l~a~~ill~f~~~G~~iL~~fgIsl~afrIaGGiiL~~ia~~ml~~~ 94 (201)
T TIGR00427 17 IINPIGNIPIFISLTEY--YTAAERNKIAKKANISSFIILLIFLVFGDTILKLFGISIDAFRIAGGILLFTIAMDMLSGE 94 (201)
T ss_pred HhCcchHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34456789999999985 89999999999999999988899999999999754 3578999999999999999764
No 15
>TIGR03716 R_switched_YkoY integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.
Probab=96.77 E-value=0.014 Score=54.92 Aligned_cols=76 Identities=18% Similarity=0.254 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 019159 146 EFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFSSF 224 (345)
Q Consensus 146 eflt~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAv-vmRiIfI~lg~~Ll~~f~wI~~igGafLly~g~ 224 (345)
...+..+.+.+.|+||+.....+.+ ..-....|...++ +||..--.+ +.++++|+++.+.+.++|.|+|.
T Consensus 98 av~~I~~~DlvFSlDSV~A~~git~--------~~~ii~~g~~~sIl~lr~~s~~l-~~li~r~p~L~~~~~~iL~~ig~ 168 (215)
T TIGR03716 98 TVLKVELMDIAFSVDSILAAVALSG--------QFWVVFLGGIIGILIMRFAATIF-VKLLERFPELETAAFLLIGWIGV 168 (215)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhcc--------ChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555678899999999998888754 3357888888887 788876666 55888999999999999999999
Q ss_pred Hhhhhc
Q 019159 225 KLFASE 230 (345)
Q Consensus 225 k~~~~~ 230 (345)
||+.+.
T Consensus 169 kLil~~ 174 (215)
T TIGR03716 169 KLLLET 174 (215)
T ss_pred HHHHHH
Confidence 999875
No 16
>COG1971 Predicted membrane protein [Function unknown]
Probab=96.76 E-value=0.18 Score=46.97 Aligned_cols=82 Identities=17% Similarity=0.162 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHH
Q 019159 146 EFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-----EAVNLVLAGILL 220 (345)
Q Consensus 146 eflt~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f-----~wI~~igGafLl 220 (345)
++++..++-..+|.||-.|=.. -+--+.+++. +..|..|+... ++-.+++++|..+=..+ +|-.+++++.|+
T Consensus 2 ~~~sllllA~alsmDAFav~l~-~G~~~~k~~~-~~~L~ia~~fG-~f~~i~pliG~~~g~~~s~~i~~~~~wigf~lL~ 78 (190)
T COG1971 2 NIISLLLLAIALSMDAFAVSLG-KGLAKHKIRF-KEALVIALIFG-VFQAIMPLIGWFIGKFLSTFIAEWAHWIGFVLLI 78 (190)
T ss_pred cHHHHHHHHHHHhhHHHHHHHH-hhhhhccccH-HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999665322 1111223332 34555554444 34566777776554322 356778999999
Q ss_pred HHHHHhhhhc
Q 019159 221 FSSFKLFASE 230 (345)
Q Consensus 221 y~g~k~~~~~ 230 (345)
+.|.+|+++.
T Consensus 79 ~lG~~mI~e~ 88 (190)
T COG1971 79 ILGLKMIIEG 88 (190)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 17
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=96.62 E-value=0.024 Score=51.69 Aligned_cols=75 Identities=16% Similarity=0.170 Sum_probs=58.0
Q ss_pred HHHHHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 019159 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225 (345)
Q Consensus 147 flt~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAv-vmRiIfI~lg~~Ll~~f~wI~~igGafLly~g~k 225 (345)
..+..+.+.+.|+||+.....+.+. +-..+..|+..++ +||..- -..+.++++|+++.+.+.++|.|+|.|
T Consensus 100 v~~I~~~D~~fS~DsV~a~~~~~~~-------~~~li~~g~~i~i~~m~~~s-~~~~~~~~~~p~l~~~~~~~L~~ig~k 171 (176)
T TIGR03717 100 IKTIVIADAVMSLDNVLAVAGAAHG-------HLGLLIFGLLLSIPIIVWGS-TLILKLMDRFPWIIYIGAALLGYVAGE 171 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC-------CchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788999999999988776641 3357788888877 444443 355567889999999999999999999
Q ss_pred hhhh
Q 019159 226 LFAS 229 (345)
Q Consensus 226 ~~~~ 229 (345)
|+.+
T Consensus 172 l~~~ 175 (176)
T TIGR03717 172 MIVT 175 (176)
T ss_pred HhcC
Confidence 9874
No 18
>PRK11111 hypothetical protein; Provisional
Probab=96.27 E-value=0.41 Score=45.00 Aligned_cols=71 Identities=14% Similarity=0.179 Sum_probs=61.5
Q ss_pred chhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHhhhhc
Q 019159 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF----EAVNLVLAGILLFSSFKLFASE 230 (345)
Q Consensus 158 SvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f----~wI~~igGafLly~g~k~~~~~ 230 (345)
=+.|+-+|....+. .++++|+|+.....+.|.+.=++|.++|-++++-| +-....||+.|+..|++|+..+
T Consensus 23 Pig~ipiflslt~~--~s~~~r~~ia~~a~l~a~~ill~f~~~G~~iL~~fGIsl~afrIaGGiiL~~ial~Ml~g~ 97 (214)
T PRK11111 23 PVGILPVFISMTSH--QTAAERNKTNLTANLSVAIILLISLFLGDFILNLFGISIDSFRIAGGILVVTIAMSMISGK 97 (214)
T ss_pred cchhHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 35688888888885 79999999999999999988889999999999754 3478999999999999999754
No 19
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=96.19 E-value=0.1 Score=48.42 Aligned_cols=74 Identities=23% Similarity=0.331 Sum_probs=47.6
Q ss_pred hchhHHHHHHHHhCcCCCChHhHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhccCC
Q 019159 157 LSVDNLFVFVLIFKYFKVPVMYQNRVLSYG-IAGAIVF--RLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDD 233 (345)
Q Consensus 157 LSvDNafV~a~If~~f~vP~~~Q~rvL~~G-IlgAvvm--RiIfI~lg~~Ll~~f~wI~~igGafLly~g~k~~~~~eee 233 (345)
=.+|..++....|++ .+.+.|+|-..+| .+|..++ =-++.+.+..++ --+|++-+.|..=++.|+|.+.++|+|
T Consensus 4 TniDd~~iL~~~F~~--~~~~~~~~~I~~GqylG~~~Lv~~Sl~~~~~l~~i-p~~wiLGlLGliPI~lGi~~l~~~~~~ 80 (191)
T PF03596_consen 4 TNIDDIVILLLFFAQ--VKTRFRRRQIVIGQYLGFTILVLASLLGAFGLLFI-PPEWILGLLGLIPIYLGIKALFSGEDD 80 (191)
T ss_pred ecHHHHHHHHHHHhc--ccCCCChhhhhhhHHHHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 368999999999996 4555566777777 3332221 111222222222 236998899999999999988765433
No 20
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=96.06 E-value=0.27 Score=46.07 Aligned_cols=75 Identities=23% Similarity=0.266 Sum_probs=65.5
Q ss_pred HHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHhhhhc
Q 019159 155 QSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE----AVNLVLAGILLFSSFKLFASE 230 (345)
Q Consensus 155 ~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f~----wI~~igGafLly~g~k~~~~~ 230 (345)
.+=...|+-++..+.+. +|+++|+|+..-....|.+.=.+|.++|.++++-|. -....||..|.+.|++|+..+
T Consensus 17 i~dP~G~ipvf~slt~~--~~~~~r~~v~~ra~i~a~~ill~f~~~G~~il~~fgIsi~a~rIAGGilLf~ia~~ml~~~ 94 (203)
T COG2095 17 IIDPIGNLPVFISLTKG--LSPEERNRVALRASIIALLILLVFLLLGEGILRFFGISIDAFRIAGGILLFLIALRMLFGP 94 (203)
T ss_pred HhCCCchhHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHhhhHHHHHHHHHHhcCC
Confidence 44567899999999985 899999999999999999988999999999997543 478899999999999999976
Q ss_pred c
Q 019159 231 E 231 (345)
Q Consensus 231 e 231 (345)
.
T Consensus 95 ~ 95 (203)
T COG2095 95 T 95 (203)
T ss_pred c
Confidence 4
No 21
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=96.04 E-value=0.11 Score=47.19 Aligned_cols=84 Identities=11% Similarity=0.090 Sum_probs=54.2
Q ss_pred hhHHHHHHHHH-HHHHhchhHHHHHHHHhCcCCCChHhHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHhhhH----HHHH
Q 019159 142 SKASEFFAGYI-LEQSLSVDNLFVFVLIFKYFKVPVMYQN-RVLSYGIAGAIVFRLSLILLGT-ATLQRFEA----VNLV 214 (345)
Q Consensus 142 ~~a~eflt~yl-LE~sLSvDNafV~a~If~~f~vP~~~Q~-rvL~~GIlgAvvmRiIfI~lg~-~Ll~~f~w----I~~i 214 (345)
|....|+...+ +=.+=+-||+.+...-.++ + .|+ -....|+..+...=......|. .+++.++| +.++
T Consensus 4 ~~~~~f~~~~~~~~~sPGP~~~~v~~~~~~~-G----~r~a~~~~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~ 78 (195)
T PRK10323 4 TLLSAFWTYTLITAMTPGPNNILALSSATSH-G----FRQSTRVLAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWA 78 (195)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHh-C----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444554433 3334488999999887664 2 222 2456677777655455555555 55655554 7889
Q ss_pred HHHHHHHHHHHhhhhc
Q 019159 215 LAGILLFSSFKLFASE 230 (345)
Q Consensus 215 gGafLly~g~k~~~~~ 230 (345)
|++||+|.|+|+++.+
T Consensus 79 Ga~YLlyLg~~~~~s~ 94 (195)
T PRK10323 79 GAAYIVWLAWKIATSP 94 (195)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999999864
No 22
>PRK11469 hypothetical protein; Provisional
Probab=95.71 E-value=1.6 Score=40.27 Aligned_cols=81 Identities=14% Similarity=0.052 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhh-hHHHHHHHHHHHH
Q 019159 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLIL----LGTATLQRF-EAVNLVLAGILLF 221 (345)
Q Consensus 147 flt~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~----lg~~Ll~~f-~wI~~igGafLly 221 (345)
+++..++=.+||.||..|=...=- +.++...++.+...+..+. +-.++++ +|..+.+.. +|-..+++..|++
T Consensus 3 ~~~i~llaialsmDaF~v~ia~G~--~~~~~~~~~~~~~~l~~g~-~q~~m~~~g~~~G~~l~~~i~~~~~~i~~~lL~~ 79 (188)
T PRK11469 3 ITATVLLAFGMSMDAFAASIGKGA--TLHKPKFSEALRTGLIFGA-VETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIF 79 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh--cccCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999776443221 1233333443433333332 2334444 333332211 1345788889999
Q ss_pred HHHHhhhhc
Q 019159 222 SSFKLFASE 230 (345)
Q Consensus 222 ~g~k~~~~~ 230 (345)
.|.+|+++.
T Consensus 80 lG~~mi~e~ 88 (188)
T PRK11469 80 LGGRMIIEG 88 (188)
T ss_pred HHHHHHHHH
Confidence 999999865
No 23
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=94.10 E-value=5 Score=37.35 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=44.6
Q ss_pred HHHHHHHhchhHHHH-HHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h-HHHHHHHHHHHHHHHHh
Q 019159 150 GYILEQSLSVDNLFV-FVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-E-AVNLVLAGILLFSSFKL 226 (345)
Q Consensus 150 ~ylLE~sLSvDNafV-~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f-~-wI~~igGafLly~g~k~ 226 (345)
..++=.+||.|+..| ++.=.+. ++. --+..+..|+.-+ +|=.+-..+|..+-+.. + |-.+++|+.|++.|.+|
T Consensus 3 i~llaials~Daf~vgi~~G~~~--~~~-~~~~~l~ig~~~~-~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~m 78 (206)
T TIGR02840 3 LLLLAFAVSLDSFGVGIAYGLRK--IKI-PFLSNLIIAVISG-LFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWI 78 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--CCh-hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence 456778999999887 4433332 222 1223444444433 23333333444333222 2 46789999999999999
Q ss_pred hhhc
Q 019159 227 FASE 230 (345)
Q Consensus 227 ~~~~ 230 (345)
+.+.
T Consensus 79 i~~~ 82 (206)
T TIGR02840 79 IYNA 82 (206)
T ss_pred HHHH
Confidence 8753
No 24
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=94.05 E-value=0.61 Score=43.02 Aligned_cols=78 Identities=26% Similarity=0.309 Sum_probs=52.1
Q ss_pred HHHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh----hhHHHHHHHHHHHHHH
Q 019159 149 AGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQR----FEAVNLVLAGILLFSS 223 (345)
Q Consensus 149 t~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~-~Ll~~----f~wI~~igGafLly~g 223 (345)
+..++-.+=+=||+.+++.-.++ + ..+--..-.|+..+...=.+...+|. .++.. |..+.++|++||+|.|
T Consensus 12 ~~~~~~~~PGP~~~~v~~~~~~~-G---~~~g~~~~~G~~~G~~v~~~l~~~Gl~all~~~~~~f~~lk~~GaaYL~ylg 87 (208)
T COG1280 12 AALVLAATPGPDNLLVLARSLSR-G---RRAGLATALGIALGDLVHMLLAALGLAALLATSPALFTVLKLAGAAYLLYLG 87 (208)
T ss_pred HHHHHhcCCCccHHHHHHHHHHh-c---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34566666788999999887663 1 22223444555545555555555653 45544 5568999999999999
Q ss_pred HHhhhhc
Q 019159 224 FKLFASE 230 (345)
Q Consensus 224 ~k~~~~~ 230 (345)
+|+++..
T Consensus 88 ~~~~ra~ 94 (208)
T COG1280 88 WKALRAG 94 (208)
T ss_pred HHHHhcc
Confidence 9999965
No 25
>TIGR03718 R_switched_Alx integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.
Probab=94.03 E-value=0.22 Score=49.40 Aligned_cols=75 Identities=21% Similarity=0.169 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 019159 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225 (345)
Q Consensus 147 flt~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAv-vmRiIfI~lg~~Ll~~f~wI~~igGafLly~g~k 225 (345)
..+.-+.+.+-|+||+..+..+.+. +-+.+.|-..|+ ++|....+ ...++++|+++.+.++++|.++|.|
T Consensus 195 li~Ie~~DlvFslDSIpAi~aiT~d--------~~iV~tsnifaIlgLR~lyf~-l~~ll~rf~~L~~~~a~iL~fIGvk 265 (302)
T TIGR03718 195 LVLVETTDLIFAVDSIPAIFAITQD--------PFIVFTSNIFAILGLRSLYFL-LAGLLERFHYLKYGLAVILVFIGVK 265 (302)
T ss_pred HHHHHHHHHHHhhccHHHHHHhhcC--------CeEEehHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3445677899999999999888763 235555666665 89998766 5568899999999999999999999
Q ss_pred hhhhc
Q 019159 226 LFASE 230 (345)
Q Consensus 226 ~~~~~ 230 (345)
|+.++
T Consensus 266 mll~~ 270 (302)
T TIGR03718 266 MLLHA 270 (302)
T ss_pred HHHhh
Confidence 99854
No 26
>PRK10229 threonine efflux system; Provisional
Probab=93.45 E-value=0.97 Score=40.95 Aligned_cols=79 Identities=14% Similarity=0.149 Sum_probs=53.4
Q ss_pred HHHHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhh----HHHHHHHHHHHHH
Q 019159 148 FAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQRFE----AVNLVLAGILLFS 222 (345)
Q Consensus 148 lt~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~-~Ll~~f~----wI~~igGafLly~ 222 (345)
....++..+=+-||+.++..-.++ + ..+--....|+..+...=.+...+|. .+++.++ .+.++|++||+|.
T Consensus 10 ~~~~~~~~sPGP~~~~vi~~~~~~-G---~~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~~Ga~yLlyl 85 (206)
T PRK10229 10 MVHIVALMSPGPDFFFVSQTAVSR-S---RKEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMVGGGLYLCWM 85 (206)
T ss_pred HHHHHHhcCCCchhHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 335666777788999999887764 2 11222345566666555555555666 4555544 4788999999999
Q ss_pred HHHhhhhc
Q 019159 223 SFKLFASE 230 (345)
Q Consensus 223 g~k~~~~~ 230 (345)
|+|++++.
T Consensus 86 g~~~~~~~ 93 (206)
T PRK10229 86 GYQMLRGA 93 (206)
T ss_pred HHHHHHhc
Confidence 99999864
No 27
>PRK09304 arginine exporter protein; Provisional
Probab=93.35 E-value=0.98 Score=41.31 Aligned_cols=78 Identities=19% Similarity=0.149 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhH----HHHHHHHHHHH
Q 019159 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGT-ATLQRFEA----VNLVLAGILLF 221 (345)
Q Consensus 147 flt~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~-~Ll~~f~w----I~~igGafLly 221 (345)
++.|+.+-..=+-||+.+...-.++ .+.-....|+..+..+=.....+|. .+++.++| +.++|++||+|
T Consensus 9 ~~~g~~~~~tPGP~~~~v~~~~~~~------~~~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l~~~Ga~YLly 82 (207)
T PRK09304 9 FALGAAMILPLGPQNAFVMNQGIRR------QYHLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALVTWGGVAFLLW 82 (207)
T ss_pred HHHHHHHHhccChHHHHHHHHHHcc------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777788999999875542 1234555566555555555545555 45656555 78889999999
Q ss_pred HHHHhhhhc
Q 019159 222 SSFKLFASE 230 (345)
Q Consensus 222 ~g~k~~~~~ 230 (345)
.|+|+++.+
T Consensus 83 Lg~~~~rs~ 91 (207)
T PRK09304 83 YGFGAFKTA 91 (207)
T ss_pred HHHHHHHHh
Confidence 999999864
No 28
>TIGR00948 2a75 L-lysine exporter.
Probab=92.97 E-value=0.77 Score=40.69 Aligned_cols=68 Identities=15% Similarity=0.099 Sum_probs=46.8
Q ss_pred hchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh----hhHHHHHHHHHHHHHHHHhhhhc
Q 019159 157 LSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTA-TLQR----FEAVNLVLAGILLFSSFKLFASE 230 (345)
Q Consensus 157 LSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~-Ll~~----f~wI~~igGafLly~g~k~~~~~ 230 (345)
-+-||++++..-.++ + +--....|+..+...=.++..+|.. +++. +..+.++||+||+|.|+|++++.
T Consensus 5 pGP~~~~vi~~~~~~-~-----~g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~~ 77 (177)
T TIGR00948 5 IGAQNAFVLRQGIRR-E-----HVLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKTA 77 (177)
T ss_pred ecchHHHHHHHHHcc-c-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888888887762 1 1234456666666666566666654 5544 44588999999999999999864
No 29
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=92.02 E-value=1.3 Score=39.33 Aligned_cols=69 Identities=25% Similarity=0.251 Sum_probs=43.1
Q ss_pred hchhHHHHHHHHhCcCCCChHhHHHHH--HHHHHHHHHHHHHHHHHHHHHH-Hh----hhHHHHHHHHHHHHHHHHhhhh
Q 019159 157 LSVDNLFVFVLIFKYFKVPVMYQNRVL--SYGIAGAIVFRLSLILLGTATL-QR----FEAVNLVLAGILLFSSFKLFAS 229 (345)
Q Consensus 157 LSvDNafV~a~If~~f~vP~~~Q~rvL--~~GIlgAvvmRiIfI~lg~~Ll-~~----f~wI~~igGafLly~g~k~~~~ 229 (345)
.+-+|+.++..-.++ + +++.+ ..|...+...=+....+|...+ +. ..++.++||+||+|.|++++++
T Consensus 7 PGP~~~~~i~~~~~~-G-----~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~ 80 (191)
T PF01810_consen 7 PGPVNLLVISNGLRK-G-----FKAGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRS 80 (191)
T ss_pred CCHHHHHHHHHHHHh-C-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356788887776553 1 33333 3444444444445555555444 32 3458899999999999999996
Q ss_pred cc
Q 019159 230 EE 231 (345)
Q Consensus 230 ~e 231 (345)
+.
T Consensus 81 ~~ 82 (191)
T PF01810_consen 81 KF 82 (191)
T ss_pred cc
Confidence 53
No 30
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=90.91 E-value=3 Score=37.76 Aligned_cols=75 Identities=12% Similarity=0.123 Sum_probs=49.2
Q ss_pred HHHHHHHhchhHHHHHHHHhCcCCCChHhHHHH--HHHHHHHHHHHHHHHHHHHH-HHHHhhh----HHHHHHHHHHHHH
Q 019159 150 GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRV--LSYGIAGAIVFRLSLILLGT-ATLQRFE----AVNLVLAGILLFS 222 (345)
Q Consensus 150 ~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rv--L~~GIlgAvvmRiIfI~lg~-~Ll~~f~----wI~~igGafLly~ 222 (345)
..++-.+=+=||+.++..-.++ - +++. ...|+..+...=.+...+|. .+++.++ .+.++|++||+|.
T Consensus 13 ~~~~~~sPGP~~~~v~~~~~~~-----G-~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~Ga~YL~~l 86 (205)
T PRK10520 13 SIILSLSPGSGAINTMSTSISH-----G-YRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWAGAAYLIWL 86 (205)
T ss_pred HHHHhcCCchhHHHHHHHHHHh-----h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3445556677888888776543 1 3333 33466666655555555555 4555444 4788999999999
Q ss_pred HHHhhhhc
Q 019159 223 SFKLFASE 230 (345)
Q Consensus 223 g~k~~~~~ 230 (345)
|+|+++.+
T Consensus 87 g~~~~~s~ 94 (205)
T PRK10520 87 GIQQWRAA 94 (205)
T ss_pred HHHHHhCC
Confidence 99999864
No 31
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=90.72 E-value=2.3 Score=37.65 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=43.0
Q ss_pred hhHHHHHHHHhCcCCCChHhHHHH--HHHHHHHHHHHHHHHHHHHH-HHHHhhh----HHHHHHHHHHHHHHHHhhhhc
Q 019159 159 VDNLFVFVLIFKYFKVPVMYQNRV--LSYGIAGAIVFRLSLILLGT-ATLQRFE----AVNLVLAGILLFSSFKLFASE 230 (345)
Q Consensus 159 vDNafV~a~If~~f~vP~~~Q~rv--L~~GIlgAvvmRiIfI~lg~-~Ll~~f~----wI~~igGafLly~g~k~~~~~ 230 (345)
-||+.++..-.++ . +++. ...|+..+...=++...+|. .+++.++ .+.++||+||+|.|+++++++
T Consensus 4 P~~~~~~~~~~~~-----G-~~~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~~~ 76 (185)
T TIGR00949 4 PNFFVVMQTSLSS-----G-RRAGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLRKK 76 (185)
T ss_pred cchHHHHHHHHHh-----h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4677777766543 2 3333 45566666655555555554 4555444 478899999999999999853
No 32
>PRK10958 leucine export protein LeuE; Provisional
Probab=90.48 E-value=3.3 Score=38.14 Aligned_cols=73 Identities=16% Similarity=0.154 Sum_probs=48.6
Q ss_pred HHHHHhchhHHHHHHHHhCcCCCChHhHHHHH--HHHHHHHHHHHHHHHHHHHH-HHHhh----hHHHHHHHHHHHHHHH
Q 019159 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVL--SYGIAGAIVFRLSLILLGTA-TLQRF----EAVNLVLAGILLFSSF 224 (345)
Q Consensus 152 lLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL--~~GIlgAvvmRiIfI~lg~~-Ll~~f----~wI~~igGafLly~g~ 224 (345)
++=.+=+-||+.++..-.++ -+++.+ ..|+..+...=+....+|.. ++..+ ..+.++||+||+|.|+
T Consensus 19 ~~~~sPGP~~~~v~~~~~~~------G~r~~~~~~~G~~~g~~~~~~~~~~G~~~l~~~~p~~~~~l~~~G~~yL~~la~ 92 (212)
T PRK10958 19 FIVLLPGPNSLYVLSTAARR------GVKAGYRAACGVFIGDAVLMFLAAAGVASLLKATPLLFNVVKYLGAAYLLYLGV 92 (212)
T ss_pred HHhcCCchHHHHHHHHHHhh------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34456788999999887664 133444 34555555555555555553 44443 4478999999999999
Q ss_pred Hhhhhc
Q 019159 225 KLFASE 230 (345)
Q Consensus 225 k~~~~~ 230 (345)
|.++++
T Consensus 93 ~~~~~~ 98 (212)
T PRK10958 93 KMLRAA 98 (212)
T ss_pred HHHHhh
Confidence 999864
No 33
>COG2119 Predicted membrane protein [Function unknown]
Probab=88.75 E-value=11 Score=35.27 Aligned_cols=68 Identities=15% Similarity=0.223 Sum_probs=57.2
Q ss_pred hhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHhhhhcc
Q 019159 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFE--AVNLVLAGILLFSSFKLFASEE 231 (345)
Q Consensus 159 vDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAv-vmRiIfI~lg~~Ll~~f~--wI~~igGafLly~g~k~~~~~e 231 (345)
.|--+.++++.. -++|++..+-|+.+|. .|-+.-..+|-+..+-++ |..++.|..-+-.|+|++.++.
T Consensus 17 GDKT~lia~llA-----~r~~~~~v~~g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l~edk 87 (190)
T COG2119 17 GDKTQLIAMLLA-----MRYRRWPVFAGIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWMLIEDK 87 (190)
T ss_pred ccHHHHHHHHHH-----HhcCCchhHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhcccc
Confidence 788999999875 3677889999999998 799999999998886666 7888888888888999998763
No 34
>COG1279 Lysine efflux permease [General function prediction only]
Probab=85.48 E-value=9.4 Score=36.10 Aligned_cols=72 Identities=24% Similarity=0.244 Sum_probs=46.1
Q ss_pred HHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhH----HHHHHHHHHHH
Q 019159 150 GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLG----TATLQRFEA----VNLVLAGILLF 221 (345)
Q Consensus 150 ~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg----~~Ll~~f~w----I~~igGafLly 221 (345)
+.-+=..+++.|+||+-.=.+ |+++|..-+.-+ +.=.++|.+| ..++++.+| +.+.|.+||+|
T Consensus 12 ~~~LI~pIGaQNaFVl~QGi~--------r~~~l~~~~~c~-i~D~~Li~~gv~G~~~li~~~p~l~~i~~~~G~~FLl~ 82 (202)
T COG1279 12 GASLILPIGAQNAFVLNQGIR--------REYVLPIALLCA-ISDIVLISAGVFGVGALIAKSPWLLLIVRWGGAAFLLY 82 (202)
T ss_pred HHHHHHhccchhHHHHHHHHh--------hccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 334456779999999876443 355655544433 3333344333 345666666 56678899999
Q ss_pred HHHHhhhhc
Q 019159 222 SSFKLFASE 230 (345)
Q Consensus 222 ~g~k~~~~~ 230 (345)
.|++-+++.
T Consensus 83 yg~~a~~~a 91 (202)
T COG1279 83 YGLLALKSA 91 (202)
T ss_pred HHHHHHHhh
Confidence 999998864
No 35
>PRK11469 hypothetical protein; Provisional
Probab=82.83 E-value=21 Score=32.91 Aligned_cols=98 Identities=19% Similarity=0.207 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHh----Chh-------hHHHHHHHHHHHHHhchhHHHH-HHHHhCcCCCChHhHHHHHHHHHHHH
Q 019159 123 FCVSTAVAFGLGVGFIE----GAS-------KASEFFAGYILEQSLSVDNLFV-FVLIFKYFKVPVMYQNRVLSYGIAGA 190 (345)
Q Consensus 123 ~wv~lAllFg~~v~~~~----g~~-------~a~eflt~ylLE~sLSvDNafV-~a~If~~f~vP~~~Q~rvL~~GIlgA 190 (345)
=|++..+++..+.|... +.+ .-..+....++=.++|+||+.| +..-+. ++|.- .-++..|+.-
T Consensus 70 ~~i~~~lL~~lG~~mi~e~~~~~~~~~~~~~~~~~~~~~l~LaiAtSiDAlavGi~~~~~--g~~~~--~~~~~ig~~s- 144 (188)
T PRK11469 70 HWIAFVLLIFLGGRMIIEGFRGADDEDEEPRRRHGFWLLVTTAIATSLDAMAVGVGLAFL--QVNII--ATALAIGCAT- 144 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHh--hhhHH--HHHHHHHHHH-
Confidence 47777777776666332 111 0122445677888999999988 555544 23321 1233344333
Q ss_pred HHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHhhhh
Q 019159 191 IVFRLSLILLGTATLQR-----FEAVNLVLAGILLFSSFKLFAS 229 (345)
Q Consensus 191 vvmRiIfI~lg~~Ll~~-----f~wI~~igGafLly~g~k~~~~ 229 (345)
.++..+|.++=.+ -.|..+++|+.|+..|+|++.+
T Consensus 145 ----~~~~~~G~~lG~~~g~~~g~~a~~lgG~iLI~iGi~il~~ 184 (188)
T PRK11469 145 ----LIMSTLGMMVGRFIGSIIGKKAEILGGLVLIGIGVQILWT 184 (188)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443321 1367889999999999999875
No 36
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=81.64 E-value=27 Score=31.92 Aligned_cols=72 Identities=19% Similarity=0.127 Sum_probs=46.5
Q ss_pred HHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHH
Q 019159 151 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA--VNLVLAGILLFSSF 224 (345)
Q Consensus 151 ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f~w--I~~igGafLly~g~ 224 (345)
.+.-..-+.-+....+.+.+. .|+++|.++.-+--.+.-+-.++...++..+.+.+.| ..++.++..+..++
T Consensus 93 ~l~g~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~i 166 (352)
T PF07690_consen 93 FLLGIGSGFFSPASNALIADW--FPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAI 166 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--CCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccc--chhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhh
Confidence 344444467777788888886 6777777776554444446667788888877766554 55555555555444
No 37
>COG4300 CadD Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism]
Probab=79.58 E-value=8.1 Score=36.36 Aligned_cols=86 Identities=17% Similarity=0.221 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 019159 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYG-IAGAI--VFRLSLILLGTATLQRFEAVNLVLAGILLFSS 223 (345)
Q Consensus 147 flt~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~G-IlgAv--vmRiIfI~lg~~Ll~~f~wI~~igGafLly~g 223 (345)
+.+...+-.+=++|-+++.++.|.+++. +.|+.=...| .+|.+ ++--++.+++...+. =+|+.-..|+.=+|.|
T Consensus 5 ~v~sivly~aTaiD~lIiL~l~Far~~~--~k~~~~I~~GQyLGs~~lilaSL~~a~v~~fvp-~e~I~glLGLIPi~LG 81 (205)
T COG4300 5 VVSSIVLYIATAIDLLIILLLFFARRKS--RKDILHIYLGQYLGSVILILASLLFAFVLNFVP-EEWILGLLGLIPIYLG 81 (205)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcc--cCcEEEEeHHHHHhHHHHHHHHHHHHHHHhhCc-HHHHHHHHhHHHHHHh
Confidence 4555667778899999999999997554 3233222333 22222 222222223333332 2699989999999999
Q ss_pred HHhhhhccCCCC
Q 019159 224 FKLFASEEDDTD 235 (345)
Q Consensus 224 ~k~~~~~eee~d 235 (345)
+|....+|+|+|
T Consensus 82 ik~l~~~d~d~e 93 (205)
T COG4300 82 IKVLILGDDDGE 93 (205)
T ss_pred hHHhhcccCcCc
Confidence 999886554433
No 38
>COG1971 Predicted membrane protein [Function unknown]
Probab=75.02 E-value=63 Score=30.39 Aligned_cols=75 Identities=21% Similarity=0.169 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHHHHHHHH
Q 019159 147 FFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-----EAVNLVLAGILLF 221 (345)
Q Consensus 147 flt~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f-----~wI~~igGafLly 221 (345)
|....++-++.|.||..|=+-..- ++-.-+.-+...|+. -.++..+|..+=.++ .+.-++||+.|+-
T Consensus 107 ~~~~~~laiatSidal~vG~~~a~---lgv~i~~~av~iG~~-----T~il~~~G~~IG~~~g~~~g~~ae~lgGiiLI~ 178 (190)
T COG1971 107 FKELILLAIATSIDALAVGVGLAF---LGVNILLAAVAIGLI-----TLILSALGAIIGRKLGKFLGKYAEILGGIILIG 178 (190)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHH---hcchHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 566778889999999988665543 455555556555543 234445555443322 3678899999999
Q ss_pred HHHHhhhh
Q 019159 222 SSFKLFAS 229 (345)
Q Consensus 222 ~g~k~~~~ 229 (345)
.|.|.+.+
T Consensus 179 ~G~~iL~~ 186 (190)
T COG1971 179 IGVKILLE 186 (190)
T ss_pred HHHHHHHH
Confidence 99998874
No 39
>TIGR00779 cad cadmium resistance transporter (or sequestration) family protein. These proteins are members of the Cadmium Resistance (CadD) Family (TC 2.A.77). To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes several closely related Staphylococcal proteins reported to function in cadmium resistance. Members are predicted to span the membrane five times; the mechanism of resistance is believed to be export but has also been suggested to be binding and sequestration in the membrane. Closely related but outside the scope of this model is another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export. Still more distant are other members of the broader LysE family (see Vrljic. et al, PubMed:10943564).
Probab=72.87 E-value=5 Score=37.61 Aligned_cols=73 Identities=18% Similarity=0.174 Sum_probs=46.5
Q ss_pred chhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhccCCC
Q 019159 158 SVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIV--F-RLSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASEEDDT 234 (345)
Q Consensus 158 SvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvv--m-RiIfI~lg~~Ll~~f~wI~~igGafLly~g~k~~~~~eee~ 234 (345)
.+|.++|....|++ .. +.|+|-..+|=..... . =.++.++|..++- =+|++-+.|..=++.|+|-+.++|||+
T Consensus 5 niDdi~vL~~fF~~--~~-~~~~~~IviGqylGf~~Lv~~Sl~~a~gl~~iP-~~wIlGlLGliPI~lGi~~l~~~~~~~ 80 (193)
T TIGR00779 5 GVDLLVILLIFFAR--AK-RKEYKDIYIGQYLGSIILILVSLLLAFGVNLIP-EKWVLGLLGLIPIYLGIKVAIKGECDE 80 (193)
T ss_pred cHHHHHHHHHHHHH--cc-CCCeeEEEEeHHHHHHHHHHHHHHHHHHHHhCC-HHHHHhHHhHHHHHHHHHHHhcccccc
Confidence 57999999999986 44 6666555554333321 1 1122233433332 269988999999999999888765443
No 40
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
Probab=56.22 E-value=2.7e+02 Score=31.94 Aligned_cols=103 Identities=10% Similarity=0.009 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHhchhHHHHHHHHh-CcCCCCh-HhHHHHHHHHHH-----------
Q 019159 122 AFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIF-KYFKVPV-MYQNRVLSYGIA----------- 188 (345)
Q Consensus 122 ~~wv~lAllFg~~v~~~~g~~~a~eflt~ylLE~sLSvDNafV~a~If-~~f~vP~-~~Q~rvL~~GIl----------- 188 (345)
.+-+.++++++.+++.+.|.....---..-++=+.-++||+|+++--- +. +-.. -.++-+.-.+..
T Consensus 97 V~~V~~Svv~S~Gl~s~lG~~~t~I~eViPFLvLaIGVDnifiLa~~~~~t-~~~~~v~eRIa~~l~~vGpSItltslte 175 (886)
T TIGR00920 97 LFTIFSSFVFSTAVIHFLGSELTGLNEALPFFLLLIDLSKASALAKFALSS-NSQDEVRDNIARGMAILGPTITLDTVVE 175 (886)
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHhHHHhhhchhhHHHHHhhhhcc-CCCCCHHHHHHHHHHHhccceeHHHHHH
Confidence 566778888888888777776553322234555678999999996442 11 0001 112222222221
Q ss_pred ------HHH----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 019159 189 ------GAI----VFRLSLILLGTATLQRFEAVNLVLAGILLFSSFK 225 (345)
Q Consensus 189 ------gAv----vmRiIfI~lg~~Ll~~f~wI~~igGafLly~g~k 225 (345)
|++ ..|..-.+.+.+++-.|-+-+-+|++.|-+.+-.
T Consensus 176 ~l~F~vGtls~mPAV~~Fc~ya~vAVl~nyllQmTfF~A~LsL~~~l 222 (886)
T TIGR00920 176 TLVIGVGTMSGVRRLEVLCCFGCMSVLANYFVFMTFFPACLSLVLEL 222 (886)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 121 3455555666666655656667788888877743
No 41
>PRK14013 hypothetical protein; Provisional
Probab=53.48 E-value=1.2e+02 Score=30.87 Aligned_cols=76 Identities=20% Similarity=0.193 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHH
Q 019159 146 EFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGI-AGAIVFRLSLILLGT-ATLQRFEAVNLVLAGILLFSS 223 (345)
Q Consensus 146 eflt~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GI-lgAvvmRiIfI~lg~-~Ll~~f~wI~~igGafLly~g 223 (345)
.|+..=+++.+-|+|++...-.+.+ +.-+...|. .|++.+|.+-+.+.- ..+++|.++.+-....+.+.|
T Consensus 224 ~fl~lE~~D~~FS~DsV~aafAiT~--------d~~II~~g~~igil~lRslt~yfv~~g~L~~f~yLe~ga~~~I~~lg 295 (338)
T PRK14013 224 GFLYLEVLDASFSFDGVIGAFAITN--------DIFIIALGLGIGAMFVRSLTIYLVEKGTLDEYVYLEHGAHYAIGALA 295 (338)
T ss_pred HHHHHHHHHHHHHhccchhheeecC--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccHHHHHHHHH
Confidence 3666668899999999876555543 234555554 555689998444333 467789988888888899999
Q ss_pred HHhhhh
Q 019159 224 FKLFAS 229 (345)
Q Consensus 224 ~k~~~~ 229 (345)
.||+.+
T Consensus 296 vkmll~ 301 (338)
T PRK14013 296 VIMLLS 301 (338)
T ss_pred HHHHHh
Confidence 999985
No 42
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=53.06 E-value=2.5e+02 Score=31.38 Aligned_cols=52 Identities=12% Similarity=0.072 Sum_probs=31.9
Q ss_pred HHHHHHhcCChHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhh
Q 019159 292 IPAVFGVTRDPFIVFSS-NLFAILGLRSLFTLISEGMADLEYLQVKVYWVSIN 343 (345)
Q Consensus 292 VpAafAIT~d~fIV~~g-nifAIlgLRsLyflla~ll~rf~yLk~gla~ILi~ 343 (345)
+-|+.|++-...+-+.+ +....+++-++..+++|+++++.-+-.++++++.+
T Consensus 197 ~Gaa~Gv~~Gli~~l~~~~~~~~~~~~af~GLlaG~fk~~gK~g~~~g~~l~~ 249 (764)
T TIGR02865 197 AGAAGGVVIGVILGLANNANLYQIGVFGFAGLLGGIFKELGKIGTGIGYLVGF 249 (764)
T ss_pred HhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhhccCCcceeeHHHHHHH
Confidence 44444544444332222 23446777777888888888887777777766654
No 43
>PF11298 DUF3099: Protein of unknown function (DUF3099); InterPro: IPR021449 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=47.62 E-value=72 Score=25.56 Aligned_cols=52 Identities=15% Similarity=0.068 Sum_probs=36.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHhhhh
Q 019159 176 VMYQNRVLSYGIAGAIVFRLSLILLGTATLQ--RFEAVNLVLAGILLFSSFKLFAS 229 (345)
Q Consensus 176 ~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~--~f~wI~~igGafLly~g~k~~~~ 229 (345)
+++++|...|.+.. .+|+..+++++.+.. -..|++.++++.|=|.++=+-.+
T Consensus 11 ~d~~~R~r~Y~i~M--~~Ri~~fvlA~~~~~~~~la~~~~~~av~LPwvAVviAN~ 64 (73)
T PF11298_consen 11 QDQRRRRRRYLIMM--GIRIPCFVLAAVVYRLGWLAWAIIVGAVPLPWVAVVIANA 64 (73)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhHHHHHHHHHhcccchhheeeccC
Confidence 45566777776654 678888887776662 33457778888999999866543
No 44
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=47.46 E-value=1.2e+02 Score=33.42 Aligned_cols=78 Identities=19% Similarity=0.272 Sum_probs=44.6
Q ss_pred HHHHHhchhHHHHHHHHhCcCCCChHhHHHH-H------------------HHHHH--HHH-HHHHHHHHHHHHHHHhhh
Q 019159 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRV-L------------------SYGIA--GAI-VFRLSLILLGTATLQRFE 209 (345)
Q Consensus 152 lLE~sLSvDNafV~a~If~~f~vP~~~Q~rv-L------------------~~GIl--gAv-vmRiIfI~lg~~Ll~~f~ 209 (345)
++=...++||+|++.-..++-+....-++|. . -.|+. -.+ .+|..-+..+++++=.|-
T Consensus 286 FLvlgIGvDd~Fi~~~~~~~~~~~~~~~er~~~~l~~~g~SitiTslT~~~aF~ig~~t~~pav~~Fc~~~a~av~f~~i 365 (798)
T PF02460_consen 286 FLVLGIGVDDMFIMIHAWRRTSPDLSVEERMAETLAEAGPSITITSLTNALAFAIGAITPIPAVRSFCIYAALAVLFDFI 365 (798)
T ss_pred HHHHHHHHhceEEeHHHHhhhchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHH
Confidence 4555789999999998877532222112221 1 11111 111 355555555555554455
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q 019159 210 AVNLVLAGILLFSSFKLFAS 229 (345)
Q Consensus 210 wI~~igGafLly~g~k~~~~ 229 (345)
+...+|+++|.+-+-+....
T Consensus 366 ~~it~f~a~l~l~~~re~~~ 385 (798)
T PF02460_consen 366 YQITFFPAILVLDGRREAAG 385 (798)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 56677888888888776554
No 45
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=44.96 E-value=1e+02 Score=30.70 Aligned_cols=67 Identities=16% Similarity=0.277 Sum_probs=45.0
Q ss_pred hhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHhhhhc
Q 019159 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRF--EAVNLVLAGILLFSSFKLFASE 230 (345)
Q Consensus 159 vDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAv-vmRiIfI~lg~~Ll~~f--~wI~~igGafLly~g~k~~~~~ 230 (345)
.|--|++|.+... ++-|.--+-|-..|+ +|-++-..+|=+.-+-+ .|-.|+.|+..+.-|+||+++.
T Consensus 82 GDKTFfiAAlmAm-----r~~R~~Vf~Ga~~AL~lMTiLS~~lG~aap~lipr~~T~~~~t~LF~iFGlkmL~eg 151 (294)
T KOG2881|consen 82 GDKTFFIAALMAM-----RYPRLTVFSGAMSALALMTILSVLLGWAAPNLIPRKYTYYLATALFLIFGLKMLKEG 151 (294)
T ss_pred cchHHHHHHHHHh-----hccchhHHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5777777777652 445567788999998 66666666654332222 3667788888788888888764
No 46
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=42.85 E-value=5.2e+02 Score=28.83 Aligned_cols=51 Identities=16% Similarity=-0.059 Sum_probs=31.1
Q ss_pred HHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019159 155 QSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQR 207 (345)
Q Consensus 155 ~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~ 207 (345)
..-++.+....+++... .|++.|.++.-+--.+..+.-++-.+++.++++.
T Consensus 115 ~~~~~~~~~~~~~i~~~--~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 115 AQSAIYSPAKYGIIPEL--VGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHHHhhchHHHhhhHHh--cCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455666666777775 5777777765544444445556666677766654
No 47
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=39.52 E-value=4.7e+02 Score=27.33 Aligned_cols=62 Identities=13% Similarity=0.093 Sum_probs=39.3
Q ss_pred HhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh---hhHHHHHHHHHHH
Q 019159 156 SLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQR---FEAVNLVLAGILL 220 (345)
Q Consensus 156 sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAv-vmRiIfI~lg~~Ll~~---f~wI~~igGafLl 220 (345)
..+++--.+..+..++ -|+++|.+....=..|.. .--+.++..| .+.+. ++++.|++|++-+
T Consensus 141 ~~g~~~pa~~~i~~~W--~P~~Ers~~~ail~~g~q~g~v~~mp~sg-~lc~s~~GW~sifY~~g~~g~ 206 (466)
T KOG2532|consen 141 GQGVLFPAIGSILAKW--APPNERSTFIAILTAGSQLGTIITMPVSG-LLCESSLGWPSIFYVFGIVGL 206 (466)
T ss_pred HHhHHHhhhhceeeeE--CCHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHhccCCCCchHHHHHHHHHH
Confidence 4567777788888887 688888776555444442 3333333333 45544 6779998887543
No 48
>TIGR01937 nqrB NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit. This model represents the NqrB subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=39.00 E-value=2e+02 Score=30.12 Aligned_cols=29 Identities=14% Similarity=0.136 Sum_probs=17.0
Q ss_pred hhcccchhhhHhHHHHHHHHHHHHHHHHH
Q 019159 107 QIEGRESYTSSVKTVAFCVSTAVAFGLGV 135 (345)
Q Consensus 107 ~~~~~~~~k~a~~~s~~wv~lAllFg~~v 135 (345)
|.+...+.|+-.....+-..=|++|+++.
T Consensus 44 H~r~~~~~~riM~~VilALlPa~l~~iy~ 72 (413)
T TIGR01937 44 HVRDAVDSKRWMILVVIALFPAMFFGMYN 72 (413)
T ss_pred cccCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445666776666665555556666543
No 49
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=36.39 E-value=1.8e+02 Score=21.76 Aligned_cols=14 Identities=21% Similarity=0.221 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHH
Q 019159 210 AVNLVLAGILLFSS 223 (345)
Q Consensus 210 wI~~igGafLly~g 223 (345)
|..+++|+.|+..|
T Consensus 54 ~~~~igg~iLi~iG 67 (67)
T PF02659_consen 54 YAEWIGGIILIFIG 67 (67)
T ss_pred HHHHHHHHHHHHHC
Confidence 57788998888754
No 50
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=35.12 E-value=5.6e+02 Score=26.99 Aligned_cols=97 Identities=16% Similarity=0.116 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHH
Q 019159 119 KTVAFCVSTAVAFGLGVGFIEGASKASEFFAGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLI 198 (345)
Q Consensus 119 ~~s~~wv~lAllFg~~v~~~~g~~~a~eflt~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI 198 (345)
..+..=+.+++..++.+|...|...+...... +.|+..+|....=|...-++++ .|.+.+.++=++..
T Consensus 340 ~~~alra~la~~~~~l~Wi~t~W~~G~~~~~~-----------~~v~~~lfa~~~~P~~~~~~~~-~G~l~~~~~a~~~~ 407 (650)
T PF04632_consen 340 LRNALRAFLAILIAGLFWIATGWPSGATAVMM-----------AAVVSSLFATLDNPAPALRLFL-IGALLGAVLAFLYL 407 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChhHHHHHH-----------HHHHHHHHcCCcChHHHHHHHH-HHHHHHHHHHHHHH
Confidence 44556677788888888888887766443322 3455666666443444444444 44444444444444
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 019159 199 LLGTATLQRFEAVNLVLAGILLFSSFKLF 227 (345)
Q Consensus 199 ~lg~~Ll~~f~wI~~igGafLly~g~k~~ 227 (345)
++.---++.|+.+.++.+.+++..++-+-
T Consensus 408 ~~vlP~~~~f~~L~l~l~~~l~~~~~~~~ 436 (650)
T PF04632_consen 408 FFVLPHLDGFPLLALVLAPFLFLGGLLMA 436 (650)
T ss_pred HHhhhccCcHHHHHHHHHHHHHHHHHHHc
Confidence 44433444577777777788877777653
No 51
>PRK10489 enterobactin exporter EntS; Provisional
Probab=34.88 E-value=4.3e+02 Score=25.61 Aligned_cols=45 Identities=16% Similarity=0.032 Sum_probs=24.1
Q ss_pred HHHHHHHHhCcCCCChHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhh
Q 019159 161 NLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI--VFRLSLILLGTATLQRFE 209 (345)
Q Consensus 161 NafV~a~If~~f~vP~~~Q~rvL~~GIlgAv--vmRiIfI~lg~~Ll~~f~ 209 (345)
+....+.+-+. .|++.|-++ .|+..+. +...+-..++.++.+.+.
T Consensus 330 ~~~~~~~~~~~--~p~~~~g~~--~g~~~~~~~~g~~~g~~l~G~l~~~~g 376 (417)
T PRK10489 330 SLLQYTLLQTQ--TPDEMLGRI--NGLWTAQNVTGDAIGAALLGGLGAMMT 376 (417)
T ss_pred HHHHHHHHHhh--CCHHHHHHH--HHHHHHHHhhhHhHHHHHHHHHHHHhc
Confidence 33333444443 677766664 4544433 445666666666766543
No 52
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=34.72 E-value=3.8e+02 Score=24.91 Aligned_cols=71 Identities=11% Similarity=0.044 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhchhHHHH-HHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHH
Q 019159 147 FFAGYILEQSLSVDNLFV-FVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQR-------FEAVNLVLAGI 218 (345)
Q Consensus 147 flt~ylLE~sLSvDNafV-~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~-------f~wI~~igGaf 218 (345)
.....++=.++|+||+.| ++.-+. +++.-. -++..| ++=+++..+|.++=.+ -.|- +++|+.
T Consensus 128 ~~e~l~L~iAlSiDalavG~s~~~~--g~~~~~--~~~~ig-----ivs~i~~~~G~~lG~~~~~~~~~g~~a-~igGli 197 (206)
T TIGR02840 128 GKEALLLGIALSLDAFGAGIGASLL--GLNPLA--TSILVA-----VMSFIFVSLGLFLGKKISKKSIIGKFS-FLSGIL 197 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--CccHHH--HHHHHH-----HHHHHHHHHHHHHHHHHhhhhhccchH-HHHHHH
Confidence 345678889999999988 555444 343221 223333 3445556666555322 1345 899999
Q ss_pred HHHHHHHhh
Q 019159 219 LLFSSFKLF 227 (345)
Q Consensus 219 Lly~g~k~~ 227 (345)
|+..|+|.+
T Consensus 198 LI~iG~~~~ 206 (206)
T TIGR02840 198 LILLGVWRL 206 (206)
T ss_pred HHHHHHhhC
Confidence 999998753
No 53
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=33.71 E-value=1.4e+02 Score=25.56 Aligned_cols=45 Identities=16% Similarity=0.285 Sum_probs=33.7
Q ss_pred hHHHHHHhcCChH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 019159 291 SIPAVFGVTRDPF----IVFSSNLFAILGLRSLFTLISEGMADLEYLQV 335 (345)
Q Consensus 291 SVpAafAIT~d~f----IV~~gnifAIlgLRsLyflla~ll~rf~yLk~ 335 (345)
+||.+++.--||+ +.+.||++.++.+-.++..+.+.++|.++++.
T Consensus 5 aIP~gi~~Gl~p~~~~~~~~lGN~l~vp~i~~~~~~i~~~l~~~~~~~~ 53 (121)
T PF06695_consen 5 AIPLGIALGLPPWEAFLLAFLGNILPVPFILLFLDKILKWLKRKPWLKK 53 (121)
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4677777666765 56778888888888887777788877777764
No 54
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=33.65 E-value=4e+02 Score=24.82 Aligned_cols=58 Identities=16% Similarity=-0.044 Sum_probs=29.6
Q ss_pred hhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhh--HHHHHHHHH
Q 019159 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI--VFRLSLILLGTATLQRFE--AVNLVLAGI 218 (345)
Q Consensus 159 vDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAv--vmRiIfI~lg~~Ll~~f~--wI~~igGaf 218 (345)
.-+....+++.+. .|++.|.+....|+..+. +.-.+-..++..+.+.+. |..++.+..
T Consensus 103 ~~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~ 164 (375)
T TIGR00899 103 TANPQLFALAREH--ADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALA 164 (375)
T ss_pred hhHHHHHHHHHHH--hhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHH
Confidence 3344444444443 355555555545544321 344556666777766544 455555554
No 55
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=33.11 E-value=3.8e+02 Score=24.46 Aligned_cols=59 Identities=14% Similarity=-0.011 Sum_probs=36.5
Q ss_pred HHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019159 150 GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 210 (345)
Q Consensus 150 ~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f~w 210 (345)
..+.-..-+..+....+++.+. .|+++|.|+.-+--.+.-+..++-..++..+.+.+.|
T Consensus 99 ~~l~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~ 157 (365)
T TIGR00900 99 AGILAIAQAFFTPAYQAMLPDL--VPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGI 157 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3444455566667777777775 6888776665443334445556667777777765544
No 56
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=32.85 E-value=5e+02 Score=25.68 Aligned_cols=65 Identities=12% Similarity=0.098 Sum_probs=34.8
Q ss_pred HHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hH--HHHHHHH
Q 019159 151 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-EA--VNLVLAG 217 (345)
Q Consensus 151 ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f-~w--I~~igGa 217 (345)
.+.-..-+.-.......+-+. .|+++|.++.-+-..+..+.=++...++..+.+.+ .| ..++.|+
T Consensus 139 ~~~G~~~~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~ 206 (465)
T TIGR00894 139 VIQGLAQGSVSPATHKIIVKW--APPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGI 206 (465)
T ss_pred HHHHHhcccchhhHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhH
Confidence 333344455555555666665 57777766655444433444455556666666552 33 4555444
No 57
>PRK10062 hypothetical protein; Provisional
Probab=32.68 E-value=4.2e+02 Score=26.77 Aligned_cols=18 Identities=11% Similarity=0.224 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 019159 210 AVNLVLAGILLFSSFKLF 227 (345)
Q Consensus 210 wI~~igGafLly~g~k~~ 227 (345)
+++.+||+||-|=|..-+
T Consensus 89 pLLMlGG~yLcfEGaEKv 106 (303)
T PRK10062 89 PLLMIGGAFLCFEGVEKV 106 (303)
T ss_pred HHHHHhHHHHHHhhHHHH
Confidence 578899999999997433
No 58
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=32.32 E-value=5.1e+02 Score=25.66 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHH
Q 019159 122 AFCVSTAVAFGLGVGFIEGASKASEFFAGYILE 154 (345)
Q Consensus 122 ~~wv~lAllFg~~v~~~~g~~~a~eflt~ylLE 154 (345)
..|..+++.|.+++..-.||+.+-...+.|++-
T Consensus 12 ~~~~l~~~~f~yG~~HAlgPGHGKavi~sYlv~ 44 (279)
T PRK10019 12 NAWFFIPSAILLGALHGLEPGHSKTMMAAFIIA 44 (279)
T ss_pred hHHHHHHHHHHHHHHHhcCCCcchHHHhhhhhc
Confidence 678888888888888778888776666777654
No 59
>PRK05349 Na(+)-translocating NADH-quinone reductase subunit B; Provisional
Probab=31.98 E-value=2.8e+02 Score=29.00 Aligned_cols=29 Identities=17% Similarity=0.179 Sum_probs=17.4
Q ss_pred hhcccchhhhHhHHHHHHHHHHHHHHHHH
Q 019159 107 QIEGRESYTSSVKTVAFCVSTAVAFGLGV 135 (345)
Q Consensus 107 ~~~~~~~~k~a~~~s~~wv~lAllFg~~v 135 (345)
|.+...+.|+-..+...-..=|++++++.
T Consensus 46 H~r~~~~~~riM~~ViiALlPa~l~~iy~ 74 (405)
T PRK05349 46 HVRDAIDLKRIMITVWLALFPAMFFGMYN 74 (405)
T ss_pred cccCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666777666666555566666543
No 60
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=31.10 E-value=5e+02 Score=25.16 Aligned_cols=67 Identities=12% Similarity=0.016 Sum_probs=36.0
Q ss_pred HHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hH--HHHHHHHHHH
Q 019159 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRF-EA--VNLVLAGILL 220 (345)
Q Consensus 152 lLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f-~w--I~~igGafLl 220 (345)
+.-..-+.-+..+-+++.+. .|+++|.++.-+-..+.-+.-++...++..+.+.+ .| ..++.++..+
T Consensus 103 ~~~~~~~~~~~~~~al~~~~--~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l 172 (402)
T PRK11902 103 LVAFLSASQDIVFDAYSTDV--LHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLML 172 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHh--cChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHH
Confidence 33344555666778888886 68887777554433332233333344444555532 34 4555454433
No 61
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=29.08 E-value=9.2e+02 Score=27.61 Aligned_cols=70 Identities=14% Similarity=0.105 Sum_probs=36.5
Q ss_pred HHHHHhchhHH---HHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--------hhHHHHHHHHHH
Q 019159 152 ILEQSLSVDNL---FVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATL-QR--------FEAVNLVLAGIL 219 (345)
Q Consensus 152 lLE~sLSvDNa---fV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll-~~--------f~wI~~igGafL 219 (345)
+-| .+.+|.. ||-++.+++.....+..+..-+|-.+.-+.-=++|+++|..+- .. ..|..++.++++
T Consensus 258 la~-lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~L 336 (810)
T TIGR00844 258 FGS-MLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLVV 336 (810)
T ss_pred HHH-HhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHHH
Confidence 334 5666653 4555677653221222233446666555554466888887652 11 235556666666
Q ss_pred HHH
Q 019159 220 LFS 222 (345)
Q Consensus 220 ly~ 222 (345)
+++
T Consensus 337 ifV 339 (810)
T TIGR00844 337 IFL 339 (810)
T ss_pred HHH
Confidence 544
No 62
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=26.25 E-value=8.8e+02 Score=28.79 Aligned_cols=74 Identities=20% Similarity=0.251 Sum_probs=41.4
Q ss_pred HHHHHhchhHHHHHHHHhCcCC--CChHhHHHHHHHHHH-----------------HHH----HHHHHHHHHHHHHHHhh
Q 019159 152 ILEQSLSVDNLFVFVLIFKYFK--VPVMYQNRVLSYGIA-----------------GAI----VFRLSLILLGTATLQRF 208 (345)
Q Consensus 152 lLE~sLSvDNafV~a~If~~f~--vP~~~Q~rvL~~GIl-----------------gAv----vmRiIfI~lg~~Ll~~f 208 (345)
+|=..+++||.|++....+.-. .|.++| .....+=. ||+ ..|..-+..+.+++-.|
T Consensus 465 FLvLgIGVDn~Fllv~~~~~t~~~~~v~~r-~~~~l~~~g~SI~~tslt~~~aF~~ga~t~~Pavr~F~~~~a~av~~~~ 543 (1145)
T TIGR00918 465 FLALGVGVDDVFLLAHAFSETGQNIPFEER-TGECLKRTGASVVLTSISNVTAFFMAALIPIPALRAFSLQAAIVVVFNF 543 (1145)
T ss_pred HHHhhhhhcchhHHHHHHhhcCccCCHHHH-HHHHHHHhcceeeHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 3445789999999998776521 122222 22221111 111 45555555556555455
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 019159 209 EAVNLVLAGILLFSSFKL 226 (345)
Q Consensus 209 ~wI~~igGafLly~g~k~ 226 (345)
-..+.+|.++|.+-+-+.
T Consensus 544 l~qit~F~AlLaLD~rR~ 561 (1145)
T TIGR00918 544 AAVLLVFPAILSLDLRRR 561 (1145)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556667888887777654
No 63
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=25.70 E-value=6.2e+02 Score=24.52 Aligned_cols=25 Identities=12% Similarity=-0.166 Sum_probs=20.3
Q ss_pred cccchhhhHhHHHHHHHHHHHHHHH
Q 019159 109 EGRESYTSSVKTVAFCVSTAVAFGL 133 (345)
Q Consensus 109 ~~~~~~k~a~~~s~~wv~lAllFg~ 133 (345)
+++.+.|++...+..+.+++++.+.
T Consensus 85 sG~is~~~a~~~~~~l~~~g~~l~~ 109 (296)
T PRK04375 85 TGRISPREALIFGLVLGVLGFLLLG 109 (296)
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999888888877754
No 64
>PF05609 LAP1C: Lamina-associated polypeptide 1C (LAP1C); InterPro: IPR008662 This entry contains Rattus norvegicus LAP1C proteins and several uncharacterised highly related sequences from both Mus sp. and humans. Lamina-associated polypeptide 1s (LAP1s), also known as Torsin-1A-interacting protein 1, are type 2 integral membrane proteins with a single membrane-spanning region of the inner nuclear membrane []. LAP1s bind to both A- and B-type lamins and have a putative role in the membrane attachment and assembly of the nuclear lamina [].
Probab=23.78 E-value=2.2e+02 Score=30.26 Aligned_cols=31 Identities=19% Similarity=0.139 Sum_probs=18.3
Q ss_pred CCCCCCCCCCccChhhhh-hcccchhhhHhHH
Q 019159 90 ENDNTSHSPTTVDDAERQ-IEGRESYTSSVKT 120 (345)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~-~~~~~~~k~a~~~ 120 (345)
.++..+++|.+.+...++ .+.....++...|
T Consensus 190 ~~e~~~~s~~t~~~~~~~~~~~~s~~~~~~~w 221 (465)
T PF05609_consen 190 KPETGNQSPETQKLEERKQPPSDSSIKKKSFW 221 (465)
T ss_pred CcccCCCCcccccccccCCCccccccccccch
Confidence 467778888777765443 3322335666666
No 65
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=23.62 E-value=4.7e+02 Score=22.43 Aligned_cols=46 Identities=7% Similarity=0.031 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 019159 181 RVLSYGIAGAIVFRLSLILLGTATLQRFEAVNLVLAGILLFSSFKL 226 (345)
Q Consensus 181 rvL~~GIlgAvvmRiIfI~lg~~Ll~~f~wI~~igGafLly~g~k~ 226 (345)
-.-.++.+.-...|.++.++...+.-...|...+-|.+++..|+=.
T Consensus 57 i~~~~~FL~~~~GRGlfyif~G~l~~~~~~~~~i~g~~~~~~G~~~ 102 (136)
T PF08507_consen 57 IRKYFGFLYSYIGRGLFYIFLGTLCLGQSILSIIIGLLLFLVGVIY 102 (136)
T ss_pred HHHhHhHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3445566677888999987665554444777777777777777543
No 66
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=22.82 E-value=6.4e+02 Score=23.69 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhcc
Q 019159 210 AVNLVLAGILLFSSFKLFASEE 231 (345)
Q Consensus 210 wI~~igGafLly~g~k~~~~~e 231 (345)
+++.+.+..++|++..++..++
T Consensus 268 ~~~a~aaG~~lyv~~~ell~~~ 289 (317)
T PF02535_consen 268 ILLAFAAGTFLYVAFVELLPEE 289 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778899998887653
No 67
>PRK01024 Na(+)-translocating NADH-quinone reductase subunit B; Provisional
Probab=21.84 E-value=5.9e+02 Score=27.50 Aligned_cols=33 Identities=9% Similarity=-0.008 Sum_probs=19.4
Q ss_pred hhhhhhcccchhhhHhHHHHHHHHHHHHHHHHH
Q 019159 103 DAERQIEGRESYTSSVKTVAFCVSTAVAFGLGV 135 (345)
Q Consensus 103 ~~~~~~~~~~~~k~a~~~s~~wv~lAllFg~~v 135 (345)
+.+.|.+...+.|+-.....+-..=|++++++.
T Consensus 40 ~~~PHird~~~vkr~M~~VvlALlPail~~i~~ 72 (503)
T PRK01024 40 SSPPFIRDAVDVKRWMMLVVIALFPAIFVAIWN 72 (503)
T ss_pred CCCCcccCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555667777666666656666666543
No 68
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=21.48 E-value=72 Score=30.96 Aligned_cols=43 Identities=14% Similarity=0.134 Sum_probs=33.5
Q ss_pred CCccChhhhhhc------ccchhhhHhHHHHHHHHHHHHHHHHHHHHhC
Q 019159 98 PTTVDDAERQIE------GRESYTSSVKTVAFCVSTAVAFGLGVGFIEG 140 (345)
Q Consensus 98 ~~~~~~~~~~~~------~~~~~k~a~~~s~~wv~lAllFg~~v~~~~g 140 (345)
......-.+||+ .+.|-+||..+-..++..+.+|+.-+++..+
T Consensus 182 ~~~~~~l~rHy~~L~~lrI~lSD~EA~~y~~i~i~~~~l~~~~l~~~~~ 230 (237)
T PF13748_consen 182 RRKPASLRRHYRRLSRLRIRLSDREALGYLLIGIVAALLFVFTLIMLTG 230 (237)
T ss_pred cCChHHHHHHHHHHHhhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334444466665 6778899999999999999999998887654
No 69
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=21.25 E-value=7.8e+02 Score=24.05 Aligned_cols=49 Identities=12% Similarity=0.034 Sum_probs=27.1
Q ss_pred hHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 019159 160 DNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA 210 (345)
Q Consensus 160 DNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f~w 210 (345)
-+....+.+.+. .|+++|.++.-+--.+..+.-.+...++.++.+.+.|
T Consensus 107 ~~~~~~~~i~~~--~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w 155 (485)
T TIGR00711 107 LIPLSFSTLLNI--YPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHW 155 (485)
T ss_pred HHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCc
Confidence 344455566665 5787776665443333334445566666777665443
No 70
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=20.91 E-value=1.6e+02 Score=32.81 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhc
Q 019159 195 LSLILLGTATLQRFEAVNLVLAGILLFSSFKLFASE 230 (345)
Q Consensus 195 iIfI~lg~~Ll~~f~wI~~igGafLly~g~k~~~~~ 230 (345)
+.|+++..+++.+ .|+.|++.++|++.+..|+..+
T Consensus 519 ~~Fl~~~~~iI~r-~wl~Y~~p~~Ll~~a~~Ml~~r 553 (683)
T PF04842_consen 519 LVFLALFLYIIYR-GWLGYIFPAFLLFSAVFMLWLR 553 (683)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3466667777744 7999999999999999999854
No 71
>TIGR00901 2A0125 AmpG-related permease.
Probab=20.85 E-value=7e+02 Score=23.36 Aligned_cols=59 Identities=7% Similarity=-0.156 Sum_probs=39.2
Q ss_pred HHHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019159 149 AGYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE 209 (345)
Q Consensus 149 t~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f~ 209 (345)
...++...-+..+..+.+++.+. .|+++|.++.-+-..+.-+.-++...++..+.+.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~a~~~~~--~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g 147 (356)
T TIGR00901 89 LAFLIAFFSATQDIALDAWRLEI--LSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEF 147 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--CCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34456666777788888888886 588888877766544444555555666666665544
No 72
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=20.74 E-value=3.9e+02 Score=20.34 Aligned_cols=71 Identities=21% Similarity=0.045 Sum_probs=41.3
Q ss_pred HHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHH
Q 019159 150 GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE--AVNLVLAGILLFS 222 (345)
Q Consensus 150 ~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f~--wI~~igGafLly~ 222 (345)
..+.-...+.-+....+.+.+. .|+++|.++.-+--.+.-+...+...++..+.+... +..++.++..+..
T Consensus 58 ~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (141)
T TIGR00880 58 RFLQGFGAAFALVAGAALIADI--YPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAA 130 (141)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH--CChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHH
Confidence 3444444555555666666664 688877776555444445666777777777765533 4555555444433
No 73
>COG4239 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=20.57 E-value=9e+02 Score=24.64 Aligned_cols=72 Identities=15% Similarity=0.206 Sum_probs=37.8
Q ss_pred ccChhhhhhcccc--hhhhHhHHHHHHHHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHhchhHHHHHHHHhCc
Q 019159 100 TVDDAERQIEGRE--SYTSSVKTVAFCVSTAVAFGLGVGFIEGAS-KASEFFAGYILEQSLSVDNLFVFVLIFKY 171 (345)
Q Consensus 100 ~~~~~~~~~~~~~--~~k~a~~~s~~wv~lAllFg~~v~~~~g~~-~a~eflt~ylLE~sLSvDNafV~a~If~~ 171 (345)
.+||..|+.-.|. .+|.++.-++..+..+.+.|+..+-.+|-. .+...+.-=++|+-=++--+++..++++.
T Consensus 124 GtDdqgRDV~ARliygfRiSvLfgL~lT~~SaliGv~~GA~qGyfgg~vdL~~QR~IEvws~mP~lyllii~as~ 198 (341)
T COG4239 124 GTDDQGRDVLARLIYGFRISVLFGLSLTLISALIGVLAGALQGYFGGWVDLLGQRFIEVWSGMPTLYLLIILASI 198 (341)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHhhHHHHHhcCcHHHHHHHHHHH
Confidence 3455555433221 256666666666666666655554333321 12233434567776666666666666655
Done!