Query 019159
Match_columns 345
No_of_seqs 184 out of 1404
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 11:49:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019159.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019159hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 62.2 89 0.003 28.3 11.8 53 155-209 131-183 (451)
2 4aps_A DI-OR tripeptide H+ sym 45.3 1.9E+02 0.0064 26.7 14.0 63 152-216 117-183 (491)
3 2gfp_A EMRD, multidrug resista 27.9 1.7E+02 0.0058 25.9 7.5 67 154-222 99-167 (375)
4 1pw4_A Glycerol-3-phosphate tr 20.9 4.5E+02 0.015 23.5 13.4 58 159-218 362-422 (451)
5 2esy_A LUNG surfactant protein 12.0 92 0.0031 20.4 1.4 11 25-35 1-11 (32)
6 3ixz_A Potassium-transporting 10.6 1.5E+03 0.05 24.4 11.7 23 178-200 960-982 (1034)
7 3o7q_A L-fucose-proton symport 10.0 8.8E+02 0.03 21.5 13.1 51 155-209 359-409 (438)
8 2ls4_A High affinity copper up 12.7 66 0.0023 20.2 0.0 16 123-138 3-18 (26)
9 3dl8_C SECE; RECA-type ATPase 8.5 5.4E+02 0.018 18.6 4.7 26 112-137 21-46 (65)
10 3o7q_A L-fucose-proton symport 7.2 1.2E+03 0.04 20.6 24.9 53 151-205 125-177 (438)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=62.18 E-value=89 Score=28.30 Aligned_cols=53 Identities=9% Similarity=-0.198 Sum_probs=32.5
Q ss_pred HHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019159 155 QSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE 209 (345)
Q Consensus 155 ~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f~ 209 (345)
...+.-.....+++.+. .|+++|.++.-+--.+.-+.-++...++..+++.+.
T Consensus 131 ~~~~~~~~~~~~~i~~~--~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 183 (451)
T 1pw4_A 131 WFQGMGWPPCGRTMVHW--WSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN 183 (451)
T ss_dssp HHHHHTHHHHHHHHHTT--CTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred HHhhhccchHHHHHHHH--CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33455666677788776 577777666544333334555666777777766544
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=45.26 E-value=1.9e+02 Score=26.73 Aligned_cols=63 Identities=13% Similarity=-0.052 Sum_probs=38.2
Q ss_pred HHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhH--HHHHHH
Q 019159 152 ILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIA--GAIVFRLSLILLGTATLQRFEA--VNLVLA 216 (345)
Q Consensus 152 lLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIl--gAvvmRiIfI~lg~~Ll~~f~w--I~~igG 216 (345)
+.-...+..+....+++.+. .|+++|+|....|+. +.-+.-++-..++..+.+.+.| ..++.+
T Consensus 117 l~g~~~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~ 183 (491)
T 4aps_A 117 LIIIGTGFLKPNVSTLVGTL--YDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAA 183 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--SSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHH--cCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 33444555666677777776 577777776666663 3335566667777777765444 444443
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=27.93 E-value=1.7e+02 Score=25.93 Aligned_cols=67 Identities=15% Similarity=-0.033 Sum_probs=35.9
Q ss_pred HHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHH
Q 019159 154 EQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFEA--VNLVLAGILLFS 222 (345)
Q Consensus 154 E~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f~w--I~~igGafLly~ 222 (345)
-...+.-+....+.+.+. .|+++|.++.-+--.+.-+.-++...++..+.+.+.| ..++.++..+..
T Consensus 99 g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 167 (375)
T 2gfp_A 99 GMGTGVGGVMARTLPRDL--YERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGV 167 (375)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 334444555566666664 3566666654443333345566667777777655444 444444444333
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=20.94 E-value=4.5e+02 Score=23.50 Aligned_cols=58 Identities=9% Similarity=0.007 Sum_probs=31.0
Q ss_pred hhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh--hHHHHHHHHH
Q 019159 159 VDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIV-FRLSLILLGTATLQRF--EAVNLVLAGI 218 (345)
Q Consensus 159 vDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvv-mRiIfI~lg~~Ll~~f--~wI~~igGaf 218 (345)
.-+....+++.+. .|++.|.++.-+--...-+ ...+...++..+.+.+ .+..++.+++
T Consensus 362 ~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 422 (451)
T 1pw4_A 362 GPVMLIGLHALEL--APKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGG 422 (451)
T ss_dssp HHHHHHHHHHHHT--SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHH
T ss_pred chHHHHHHHHHHH--hchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3344444455554 5776655554333333335 7777788888787753 3444444433
No 5
>2esy_A LUNG surfactant protein C; lipid binding protein; NMR {Synthetic}
Probab=11.99 E-value=92 Score=20.40 Aligned_cols=11 Identities=36% Similarity=0.501 Sum_probs=8.5
Q ss_pred cCCCCCCCCCc
Q 019159 25 SPTSTSQVPKL 35 (345)
Q Consensus 25 ~~~~~~~~~~~ 35 (345)
+||+|++.|..
T Consensus 1 sPPdYSa~P~g 11 (32)
T 2esy_A 1 SPPDYSAAPRG 11 (32)
T ss_dssp CCCCCCSCCCS
T ss_pred CCCccccCcCc
Confidence 58899987765
No 6
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=10.61 E-value=1.5e+03 Score=24.44 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 019159 178 YQNRVLSYGIAGAIVFRLSLILL 200 (345)
Q Consensus 178 ~Q~rvL~~GIlgAvvmRiIfI~l 200 (345)
++++.+.+++++.+++-++++.+
T Consensus 960 ~~N~~l~~~~~~~~~l~~~~~~~ 982 (1034)
T 3ixz_A 960 FRNRILVIAIVFQVCIGCFLCYC 982 (1034)
T ss_pred cccHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999888777665543
No 7
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=10.04 E-value=8.8e+02 Score=21.47 Aligned_cols=51 Identities=12% Similarity=-0.080 Sum_probs=31.6
Q ss_pred HHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 019159 155 QSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATLQRFE 209 (345)
Q Consensus 155 ~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll~~f~ 209 (345)
...+.=+....+.+.+. .|++ +.++.-+.. .+.+...+...+...+.+.+.
T Consensus 359 ~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 359 AFMSIQYPTIFSLGIKN--LGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp HHHTTHHHHHHHHHHSS--CGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhh--cccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 33444445566666664 5655 666666666 444677777888777776543
No 8
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=12.74 E-value=66 Score=20.17 Aligned_cols=16 Identities=38% Similarity=0.546 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 019159 123 FCVSTAVAFGLGVGFI 138 (345)
Q Consensus 123 ~wv~lAllFg~~v~~~ 138 (345)
.|+.+|++.|..++++
T Consensus 3 g~l~iavvlGa~~Gyf 18 (26)
T 2ls4_A 3 GYLCIAVAAGAGTGYF 18 (26)
Confidence 4888899988887754
No 9
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=8.51 E-value=5.4e+02 Score=18.60 Aligned_cols=26 Identities=19% Similarity=0.116 Sum_probs=15.0
Q ss_pred chhhhHhHHHHHHHHHHHHHHHHHHH
Q 019159 112 ESYTSSVKTVAFCVSTAVAFGLGVGF 137 (345)
Q Consensus 112 ~~~k~a~~~s~~wv~lAllFg~~v~~ 137 (345)
++-+|....+...+...+++++++|.
T Consensus 21 Ptr~e~~~~T~vViv~v~i~~~~i~~ 46 (65)
T 3dl8_C 21 PSRELVVKATISVIIFSLAIGVYLWI 46 (65)
T ss_dssp -------CHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777788888888888887764
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=7.15 E-value=1.2e+03 Score=20.63 Aligned_cols=53 Identities=9% Similarity=0.048 Sum_probs=33.0
Q ss_pred HHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019159 151 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAIVFRLSLILLGTATL 205 (345)
Q Consensus 151 ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAvvmRiIfI~lg~~Ll 205 (345)
.+.=...+.-.....+++.+. .|+++|.++.-+--.+.-+..++...++..+.
T Consensus 125 ~l~G~~~~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 125 FIIAAGLGCLETAANPFVTVL--GPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS--SCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHhhHHHhhhhHHHHHHHH--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444566666777777776 58888777654443343456666666776666
Done!