Query 019159
Match_columns 345
No_of_seqs 184 out of 1404
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 11:49:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019159.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019159hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 27.0 1.6E+02 0.011 24.1 11.6 48 157-208 357-407 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 23.5 1.6E+02 0.012 23.0 13.2 72 150-223 319-393 (417)
3 d2axtl1 f.23.31.1 (L:1-37) Pho 13.0 66 0.0048 20.1 2.5 22 173-194 7-28 (37)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 8.9 4.4E+02 0.032 21.0 16.9 32 151-184 124-155 (447)
5 d1be3k_ f.23.15.1 (K:) Subunit 6.5 1.7E+02 0.012 16.6 2.3 16 178-193 3-18 (26)
6 d1ag7a_ g.3.6.1 (A:) Conotoxin 5.8 1.3E+02 0.0095 18.0 1.7 18 56-73 5-26 (34)
7 d1iwga8 f.35.1.1 (A:513-566,A: 3.2 6.5E+02 0.048 19.6 4.8 22 148-169 114-135 (222)
8 d1iyjb3 b.40.4.3 (B:2599-2731) 3.1 2.7E+02 0.019 21.4 2.0 36 10-46 95-131 (133)
9 d1jo5a_ f.3.1.1 (A:) Light-har 2.7 4E+02 0.029 17.2 2.3 30 109-138 15-44 (48)
10 d1lghb_ f.3.1.1 (B:) Light-har 2.5 6.8E+02 0.049 15.7 3.2 29 110-138 11-39 (43)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=27.04 E-value=1.6e+02 Score=24.10 Aligned_cols=48 Identities=10% Similarity=0.090 Sum_probs=23.7
Q ss_pred hchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhh
Q 019159 157 LSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGA---IVFRLSLILLGTATLQRF 208 (345)
Q Consensus 157 LSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgA---vvmRiIfI~lg~~Ll~~f 208 (345)
.+.-+........+. .|++.|-++. |+... ++--++...++..+.+.+
T Consensus 357 ~~~~~~~~~~~~~~~--~p~~~~g~~~--g~~~~~~~~~g~~~~~~~~g~~~~~~ 407 (447)
T d1pw4a_ 357 IYGPVMLIGLHALEL--APKKAAGTAA--GFTGLFGYLGGSVAASAIVGYTVDFF 407 (447)
T ss_dssp HTHHHHHHHHHHHHT--SCTTHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHH--cCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555553 5776655543 43322 223344455566666654
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=23.53 E-value=1.6e+02 Score=23.05 Aligned_cols=72 Identities=11% Similarity=-0.008 Sum_probs=40.8
Q ss_pred HHHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHH
Q 019159 150 GYILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLSYGIAGAI-VFRLSLILLGTATLQRFE--AVNLVLAGILLFSS 223 (345)
Q Consensus 150 ~ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~~GIlgAv-vmRiIfI~lg~~Ll~~f~--wI~~igGafLly~g 223 (345)
..+.-...+.-+....+.+.+. .|++.|.++.-.....+. +...+...++.++.+.+. +..++.|++.+..+
T Consensus 319 ~~l~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~ 393 (417)
T d1pv7a_ 319 KTLHMFEVPFLLVGCFKYITSQ--FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFT 393 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--SCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 3444455566666667777665 688877665433222222 445666777777777643 45555555444333
No 3
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=13.02 E-value=66 Score=20.11 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=15.8
Q ss_pred CCChHhHHHHHHHHHHHHHHHH
Q 019159 173 KVPVMYQNRVLSYGIAGAIVFR 194 (345)
Q Consensus 173 ~vP~~~Q~rvL~~GIlgAvvmR 194 (345)
+.|-+.-+.-|.||++.-.++-
T Consensus 7 ~q~veLNrtsLy~GlLlifvl~ 28 (37)
T d2axtl1 7 RQPVELNRTSLYLGLLLILVLA 28 (37)
T ss_dssp CCCBCCCHHHHHHHHHHHHHHH
T ss_pred CCccccchhhHHHHHHHHHHHH
Confidence 3567777889999998754443
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=8.91 E-value=4.4e+02 Score=21.02 Aligned_cols=32 Identities=3% Similarity=-0.102 Sum_probs=19.4
Q ss_pred HHHHHHhchhHHHHHHHHhCcCCCChHhHHHHHH
Q 019159 151 YILEQSLSVDNLFVFVLIFKYFKVPVMYQNRVLS 184 (345)
Q Consensus 151 ylLE~sLSvDNafV~a~If~~f~vP~~~Q~rvL~ 184 (345)
.+.-...+.-.....+.+.+. .|+++|.++.-
T Consensus 124 ~~~g~~~~~~~~~~~~~i~~~--~~~~~r~~~~~ 155 (447)
T d1pw4a_ 124 FLCGWFQGMGWPPCGRTMVHW--WSQKERGGIVS 155 (447)
T ss_dssp HHHHHHHHHTHHHHHHHHHTT--CTTTHHHHHHH
T ss_pred HHHHHhhhhhhhHHHHHHHHH--HHhhccccccc
Confidence 333344455566667777776 57777766543
No 5
>d1be3k_ f.23.15.1 (K:) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.51 E-value=1.7e+02 Score=16.63 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHH
Q 019159 178 YQNRVLSYGIAGAIVF 193 (345)
Q Consensus 178 ~Q~rvL~~GIlgAvvm 193 (345)
|-+.+-+||-.||+.+
T Consensus 3 wvptaqlwgavgavgl 18 (26)
T d1be3k_ 3 WVPTAQLWGAVGAVGL 18 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cchHHHHHhhhcceeE
Confidence 4556778999998864
No 6
>d1ag7a_ g.3.6.1 (A:) Conotoxin {Synthetic, based on Conus geographus, GS}
Probab=5.76 E-value=1.3e+02 Score=18.04 Aligned_cols=18 Identities=33% Similarity=0.691 Sum_probs=11.6
Q ss_pred cCCCCCc----ccccccCCCcc
Q 019159 56 RRGQYSP----LLACAKGTEQE 73 (345)
Q Consensus 56 ~~~~~~~----~~~~~~~~~~~ 73 (345)
|+++++| =++|.||..|.
T Consensus 5 rgsrcppqccmglrcgrgnpqk 26 (34)
T d1ag7a_ 5 RGSRCPPQCCMGLRCGRGNPQK 26 (34)
T ss_dssp TTSCSSSCBCTTEEEECSSSCE
T ss_pred CCCCCChhhceeeeccCCCchh
Confidence 4555555 36788887764
No 7
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=3.16 E-value=6.5e+02 Score=19.65 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=12.9
Q ss_pred HHHHHHHHHhchhHHHHHHHHh
Q 019159 148 FAGYILEQSLSVDNLFVFVLIF 169 (345)
Q Consensus 148 lt~ylLE~sLSvDNafV~a~If 169 (345)
..+.++=.-+.+||.+++.--.
T Consensus 114 ~~g~i~l~Gi~v~~~i~~~~~~ 135 (222)
T d1iwga8 114 QVGLLTTIGLSAKNAILIVEFA 135 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhHHHHHHHHh
Confidence 3355555666667776666533
No 8
>d1iyjb3 b.40.4.3 (B:2599-2731) OB-fold domains of BRCA2 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.10 E-value=2.7e+02 Score=21.43 Aligned_cols=36 Identities=33% Similarity=0.339 Sum_probs=25.3
Q ss_pred CccCCCcc-cceeEEecCCCCCCCCCccccccccCCCC
Q 019159 10 GVQAPHKF-DSLLLRFSPTSTSQVPKLTSLLHFCNSQA 46 (345)
Q Consensus 10 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (345)
+--.|+.- |++.|+++-..++..+ |.++|-|+.-+-
T Consensus 95 ~~~sPLE~~~s~~L~i~~Nstr~a~-w~~kLGf~~~p~ 131 (133)
T d1iyjb3 95 DACAPLEAPDSLRLKISANSTRPAR-WHSKLGFFHDPR 131 (133)
T ss_dssp SCCCGGGCCSSCEEECCTTTEEECC-SSSCSEECSCCS
T ss_pred CCcCcccccCccEEEEeecceeecc-ccccCcccCCCC
Confidence 44456655 8888999866655554 889999987543
No 9
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.72 E-value=4e+02 Score=17.22 Aligned_cols=30 Identities=13% Similarity=0.077 Sum_probs=22.6
Q ss_pred cccchhhhHhHHHHHHHHHHHHHHHHHHHH
Q 019159 109 EGRESYTSSVKTVAFCVSTAVAFGLGVGFI 138 (345)
Q Consensus 109 ~~~~~~k~a~~~s~~wv~lAllFg~~v~~~ 138 (345)
+.++-++........++++|++.-+++|.+
T Consensus 15 EA~E~H~~~~~g~~~F~~iAvvAH~L~w~w 44 (48)
T d1jo5a_ 15 QAQELHSVYMSGLWLFSAVAIVAHLAVYIW 44 (48)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666777777778999999988888754
No 10
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=2.53 E-value=6.8e+02 Score=15.66 Aligned_cols=29 Identities=10% Similarity=-0.166 Sum_probs=20.4
Q ss_pred ccchhhhHhHHHHHHHHHHHHHHHHHHHH
Q 019159 110 GRESYTSSVKTVAFCVSTAVAFGLGVGFI 138 (345)
Q Consensus 110 ~~~~~k~a~~~s~~wv~lAllFg~~v~~~ 138 (345)
.++-++........++++|++.=+++|.+
T Consensus 11 A~EfH~~~~~g~~~F~~iAvvAHiLvw~w 39 (43)
T d1lghb_ 11 AIAVHDQFKTTFSAFIILAAVAHVLVWVW 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555666666778888888888777754
Done!