BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019160
(345 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/287 (31%), Positives = 140/287 (48%), Gaps = 21/287 (7%)
Query: 49 LIGLNSHDERERAASAKAMCRASSEWGFFQVVNHGISPELLRKMRKEQELLFKTPFERKA 108
+I L+ + ERAA+ + + A WGFF++VNHGI E+ + K + +K E++
Sbjct: 6 IISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRF 65
Query: 109 TCGLLNNSYRWGTPTATCPKQFSWSEAF---HIPLTKISDQSCYGEFTSLRLVMTEFAAA 165
+ + + T W F H+P++ IS+ E R V +FA
Sbjct: 66 KELVASKALEGVQAEVT---DXDWESTFFLKHLPISNISEVPDLDE--EYREVXRDFAKR 120
Query: 166 MSKLARLLARILAENLSQQGGMLDDICNES---TCFLRLNRYPVCPISAEMFGLVPHTDS 222
+ KLA L +L ENL + G L + S +++ YP CP + GL HTD+
Sbjct: 121 LEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDA 180
Query: 223 DFLTILYQD-QVGGLQLMKDSKWVAVRPNPDALIVNIGDLFQAWSNDVYKSVEHKVMANG 281
+ +L+QD +V GLQL+KD +W+ V P +++VN+GD + +N YKSV H+V+A
Sbjct: 181 GGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQK 240
Query: 282 KMERYSVAYFLCPSYDSSIGSC---------TEPSTYRKFTFEEYRK 319
R S+A F P D+ I Y KF F++Y K
Sbjct: 241 DGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYXK 287
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/303 (29%), Positives = 144/303 (47%), Gaps = 30/303 (9%)
Query: 23 ISTPK-----RHDCHQQNGIMMEE-----CQLPLIDLIGLNSHDERERAASAKAMCRASS 72
IS PK + + N + +EE Q+P IDL + S DE+ R + + +AS
Sbjct: 15 ISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASL 74
Query: 73 EWGFFQVVNHGISPELLRKMRKEQELLFKTPFERK---ATCGLLNNSYRWGTPTAT-CPK 128
+WG ++NHGI +L+ +++K E F E K A +G+ A
Sbjct: 75 DWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASG 134
Query: 129 QFSWSEAF-HI--PLTKISDQSCYGEFTSLRLVMT-EFAAAMSKLARLLARILA------ 178
Q W + F H+ P K D S + + S + T E+A + LA + + L+
Sbjct: 135 QLEWEDYFFHLAYPEEK-RDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLE 193
Query: 179 -ENLSQQGGMLDDICNESTCFLRLNRYPVCPISAEMFGLVPHTDSDFLTILYQDQVGGLQ 237
+ L ++ G L+++ + +++N YP CP G+ HTD LT + + V GLQ
Sbjct: 194 PDRLEKEVGGLEELLLQ----MKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQ 249
Query: 238 LMKDSKWVAVRPNPDALIVNIGDLFQAWSNDVYKSVEHKVMANGKMERYSVAYFLCPSYD 297
L + KWV + PD+++++IGD + SN YKS+ H+ + N + R S A F P D
Sbjct: 250 LFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKD 309
Query: 298 SSI 300
+
Sbjct: 310 KIV 312
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 115 bits (289), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/303 (29%), Positives = 144/303 (47%), Gaps = 30/303 (9%)
Query: 23 ISTPK-----RHDCHQQNGIMMEE-----CQLPLIDLIGLNSHDERERAASAKAMCRASS 72
IS PK + + N + +EE Q+P IDL + S DE+ R + + +AS
Sbjct: 16 ISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASL 75
Query: 73 EWGFFQVVNHGISPELLRKMRKEQELLFKTPFERK---ATCGLLNNSYRWGTPTAT-CPK 128
+WG ++NHGI +L+ +++K E F E K A +G+ A
Sbjct: 76 DWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASG 135
Query: 129 QFSWSEAF-HI--PLTKISDQSCYGEFTSLRLVMT-EFAAAMSKLARLLARILA------ 178
Q W + F H+ P K D S + + S + T E+A + LA + + L+
Sbjct: 136 QLEWEDYFFHLAYPEEK-RDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLE 194
Query: 179 -ENLSQQGGMLDDICNESTCFLRLNRYPVCPISAEMFGLVPHTDSDFLTILYQDQVGGLQ 237
+ L ++ G L+++ + +++N YP CP G+ HTD LT + + V GLQ
Sbjct: 195 PDRLEKEVGGLEELLLQ----MKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQ 250
Query: 238 LMKDSKWVAVRPNPDALIVNIGDLFQAWSNDVYKSVEHKVMANGKMERYSVAYFLCPSYD 297
L + KWV + PD+++++IGD + SN YKS+ H+ + N + R S A F P D
Sbjct: 251 LFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKD 310
Query: 298 SSI 300
+
Sbjct: 311 KIV 313
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 137/302 (45%), Gaps = 28/302 (9%)
Query: 23 ISTPK-----RHDCHQQNGIMMEE-----CQLPLIDLIGLNSHDERERAASAKAMCRASS 72
IS PK + + N + +EE Q+P IDL + S DE+ R + + +AS
Sbjct: 16 ISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASL 75
Query: 73 EWGFFQVVNHGISPELLRKMRKEQELLFKTPFERK---ATCGLLNNSYRWGTPTAT-CPK 128
+WG ++NHGI +L +++K E F E K A +G+ A
Sbjct: 76 DWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASG 135
Query: 129 QFSWSEAF-HI--PLTKISDQSCYGEFTSLRLVMTEFAAAMSKLARLLARILAENLSQQG 185
Q W + F H+ P K D S + + S + E + +K RLLA + + LS
Sbjct: 136 QLEWEDYFFHLAYPEEK-RDLSIWPKTPSDYI---EATSEYAKCLRLLATKVFKALSVGL 191
Query: 186 GMLDDICNESTCFL-------RLNRYPVCPISAEMFGLVPHTDSDFLTILYQDQVGGLQL 238
G+ D + L ++N YP CP G+ HTD LT + + V GLQL
Sbjct: 192 GLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILHNXVPGLQL 251
Query: 239 MKDSKWVAVRPNPDALIVNIGDLFQAWSNDVYKSVEHKVMANGKMERYSVAYFLCPSYDS 298
+ KWV + PD+++ +IGD + SN YKS+ H+ + N + R S A F P D
Sbjct: 252 FYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDK 311
Query: 299 SI 300
+
Sbjct: 312 IV 313
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 59/288 (20%), Positives = 112/288 (38%), Gaps = 25/288 (8%)
Query: 64 AKAMCRASSEWGFFQVVNHGISPELLRKMRKEQELLFKTPFERKATCGLLNNSYR----W 119
A+ + + +GF + ++ + + + F P E K + R +
Sbjct: 23 AQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPF 82
Query: 120 GTPTATCPKQFSWSEAFH----IP-----LTKISDQSCYGEFTSLRLVMTEFAAAMSKLA 170
G TA + E +H +P +D E + + ++ ++
Sbjct: 83 GVETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSLDGXG 142
Query: 171 RLLARILAENLSQQGGMLDDICNESTCFLRLNRYPVCPISAEMFGLVPHTDSDFLTILYQ 230
+ +A L + + LRL YP P A H D + +T+L
Sbjct: 143 GKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLLG 202
Query: 231 DQVGGLQLM-KDSKWVAVRPNPDALIVNIGDLFQAWSNDVYKSVEHKVM----ANGKMER 285
+ GGL+++ +D +W+ + P P L++NIGD + +N+V S H+V+ + R
Sbjct: 203 AEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHRVVNPPPERRGVPR 262
Query: 286 YSVAYFLCPSYDSSIG------SCTEPSTY-RKFTFEEYRKQVQEDVK 326
YS +FL + D I + P Y T +E+ +Q ++K
Sbjct: 263 YSTPFFLHFASDYEIKTLQNCVTAENPDRYPESITADEFLQQRLREIK 310
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 65/254 (25%), Positives = 101/254 (39%), Gaps = 31/254 (12%)
Query: 61 AASAKAMCRASSEWGFFQVVNHGISPELLRKMRKEQELLFKTP------FERKATCGLLN 114
A SAK + E GF + NH I EL+ ++ E + F + F R+ G
Sbjct: 12 ADSAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEFXFNRETHDGFFP 71
Query: 115 NSYRWGTPTATCPKQFSWSEAFHI-PLTKISDQSCYGEFTSLRL-VMTEFAAAMSKLARL 172
S + TA E +H+ P +I D SLR ++ + A + + L
Sbjct: 72 ASI---SETAKGHTVKDIKEYYHVYPWGRIPD--------SLRANILAYYEKANTLASEL 120
Query: 173 LARILAENLSQQGGML-----DDICNESTCFLRLNRYPVCPISAEMFGL--VPHTDSDFL 225
L I + + + I N LR+ YP E + H D + +
Sbjct: 121 LEWIETYSPDEIKAKFSIPLPEXIANSHKTLLRILHYPPXTGDEEXGAIRAAAHEDINLI 180
Query: 226 TILYQDQVGGLQL-MKDSKWVAVRPNPDALIVNIGDLFQAWSNDVYKSVEHKVM----AN 280
T+L GLQ+ KD W+ V + +I+NIGD Q S+ + S H+V+ +
Sbjct: 181 TVLPTANEPGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVINPEGTD 240
Query: 281 GKMERYSVAYFLCP 294
R S+ FL P
Sbjct: 241 KTKSRISLPLFLHP 254
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/303 (22%), Positives = 110/303 (36%), Gaps = 53/303 (17%)
Query: 39 MEECQLPLIDLIGLNSHDERERAASAKAMCRASSEWGFFQVVNHGISPELLRKMRKEQEL 98
+ + +P ID+ L D+ + A+ + AS + GFF VNHGI+ + L + KE +
Sbjct: 4 VSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFHM 63
Query: 99 LFKTPFER---------KATCGLLNNSYRWGTPTATCPKQFSW----------------- 132
TP E+ K + Y P + F +
Sbjct: 64 SI-TPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTP 122
Query: 133 --------SEAFHIPLTKISDQSCYGEFTSLRLVMTEFAAAMSKLARLLARILAENLSQQ 184
E H ++Q + F ++ +A A+ K AR
Sbjct: 123 THEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKP----- 177
Query: 185 GGMLDDICNESTCFLR---LNRYPVCPISAEMFG----LVPHTDSDFLTILYQDQVGGLQ 237
DD S +R L+ YP I G H D +T+LYQ V LQ
Sbjct: 178 ----DDTL-ASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQ 232
Query: 238 LMKDSKWVAVRPNPDALIVNIGDLFQAWSNDVYKSVEHKVMANGKMERYSVAYFLCPSYD 297
+ + + + + ++N G +N+ YK+ H+V ER S+ +F+ YD
Sbjct: 233 VETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKW-VNAERQSLPFFVNLGYD 291
Query: 298 SSI 300
S I
Sbjct: 292 SVI 294
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/303 (22%), Positives = 110/303 (36%), Gaps = 53/303 (17%)
Query: 39 MEECQLPLIDLIGLNSHDERERAASAKAMCRASSEWGFFQVVNHGISPELLRKMRKEQEL 98
+ + +P ID+ L D+ + A+ + AS + GFF VNHGI+ + L + KE +
Sbjct: 4 VSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKEFHM 63
Query: 99 LFKTPFER---------KATCGLLNNSYRWGTPTATCPKQFSW----------------- 132
TP E+ K + Y P + F +
Sbjct: 64 SI-TPEEKWDLAIRAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTP 122
Query: 133 --------SEAFHIPLTKISDQSCYGEFTSLRLVMTEFAAAMSKLARLLARILAENLSQQ 184
E H ++Q + F ++ +A A+ K AR
Sbjct: 123 THEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKP----- 177
Query: 185 GGMLDDICNESTCFLR---LNRYPVCPISAEMFG----LVPHTDSDFLTILYQDQVGGLQ 237
DD S +R L+ YP I G H D +T+LYQ V LQ
Sbjct: 178 ----DDTL-ASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQ 232
Query: 238 LMKDSKWVAVRPNPDALIVNIGDLFQAWSNDVYKSVEHKVMANGKMERYSVAYFLCPSYD 297
+ + + + + ++N G +N+ YK+ H+V ER S+ +F+ YD
Sbjct: 233 VETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKW-VNAERQSLPFFVNLGYD 291
Query: 298 SSI 300
S I
Sbjct: 292 SVI 294
>pdb|3E2Z|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Kynurenine
pdb|3E2Y|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Glutamine
pdb|3E2Y|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Glutamine
Length = 410
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 123 TATCPKQFSWSEAFHIPLTKISDQSCYGEFTSLRLVMTEFAAAMSKLARLLARILAENLS 182
T P Q + +EAF I + ++ D CY F SL E ++ RLL + + +
Sbjct: 272 TCATPLQAALAEAFWIDIKRMDDPECY--FNSLP---KELEVKRDRMVRLLNSVGLKPIV 326
Query: 183 QQGG 186
GG
Sbjct: 327 PDGG 330
>pdb|3E2F|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase
Iii, Plp-Bound Form
pdb|3E2F|B Chain B, Crystal Structure Of Mouse Kynurenine Aminotransferase
Iii, Plp-Bound Form
pdb|3E2Z|A Chain A, Crystal Structure Of Mouse Kynurenine Aminotransferase Iii
In Complex With Kynurenine
pdb|2ZJG|A Chain A, Crystal Structural Of Mouse Kynurenine Aminotransferase
Iii
pdb|2ZJG|B Chain B, Crystal Structural Of Mouse Kynurenine Aminotransferase
Iii
Length = 410
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 123 TATCPKQFSWSEAFHIPLTKISDQSCYGEFTSLRLVMTEFAAAMSKLARLLARILAENLS 182
T P Q + +EAF I + ++ D CY F SL E ++ RLL + + +
Sbjct: 272 TCATPLQAALAEAFWIDIKRMDDPECY--FNSLP---KELEVKRDRMVRLLNSVGLKPIV 326
Query: 183 QQGG 186
GG
Sbjct: 327 PDGG 330
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,335,510
Number of Sequences: 62578
Number of extensions: 397958
Number of successful extensions: 820
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 802
Number of HSP's gapped (non-prelim): 13
length of query: 345
length of database: 14,973,337
effective HSP length: 100
effective length of query: 245
effective length of database: 8,715,537
effective search space: 2135306565
effective search space used: 2135306565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)