BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 019163
         (345 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3LMA|A Chain A, Crystal Structure Of The Stage V Sporulation Protein Ad
           (Spovad) From Bacillus Licheniformis. Northeast
           Structural Genomics Consortium Target Bir6.
 pdb|3LMA|B Chain B, Crystal Structure Of The Stage V Sporulation Protein Ad
           (Spovad) From Bacillus Licheniformis. Northeast
           Structural Genomics Consortium Target Bir6.
 pdb|3LMA|C Chain C, Crystal Structure Of The Stage V Sporulation Protein Ad
           (Spovad) From Bacillus Licheniformis. Northeast
           Structural Genomics Consortium Target Bir6.
 pdb|3LMA|D Chain D, Crystal Structure Of The Stage V Sporulation Protein Ad
           (Spovad) From Bacillus Licheniformis. Northeast
           Structural Genomics Consortium Target Bir6
          Length = 347

 Score = 30.4 bits (67), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 26/55 (47%)

Query: 178 ALIDPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQR 232
           ALID   AKR LA   S   + ER+ RY +E   +     T   T S  V + Q+
Sbjct: 122 ALIDGGFAKRALAATSSHNATAERQFRYPTEYGGQKPGTATSTVTGSGAVVLSQQ 176


>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
 pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
          Length = 1080

 Score = 30.0 bits (66), Expect = 1.9,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 17/91 (18%)

Query: 185 AKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKEL 244
           AKR L   +  ARS ER  +    LE K+  LQ +                 +  +NKE 
Sbjct: 902 AKRELKKLKIEARSVERYKKLHIGLENKIMQLQRK-----------------IDEQNKEY 944

Query: 245 KLRLQAMEQQAHLRDALNEALREEVQRLKIA 275
           K  L+ M           E LR +V+RL+++
Sbjct: 945 KSLLEKMNNLEITYSTETEKLRSDVERLRMS 975


>pdb|3LM6|A Chain A, Crystal Structure Of Stage V Sporulation Protein Ad
           (Spovad) From Bacillus Subtilis, Northeast Structural
           Genomics Consortium Target Sr525
 pdb|3LM6|B Chain B, Crystal Structure Of Stage V Sporulation Protein Ad
           (Spovad) From Bacillus Subtilis, Northeast Structural
           Genomics Consortium Target Sr525
          Length = 346

 Score = 29.6 bits (65), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 25/54 (46%)

Query: 178 ALIDPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQ 231
           AL+D   AKR LA   S   + ER+ RY +E   +     T   T S  V + Q
Sbjct: 122 ALVDGGFAKRALAATSSHNATAERQFRYPTEYGGQKPDTATSTVTGSGAVVISQ 175


>pdb|1T2K|D Chain D, Structure Of The Dna Binding Domains Of Irf3, Atf-2 And
           Jun Bound To Dna
          Length = 61

 Score = 29.3 bits (64), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 33/55 (60%)

Query: 183 KRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGL 237
           KR K +  NR +A+RS++++  +   LE+K + L +    L ++VT+L+ +   L
Sbjct: 1   KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.130    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,776,381
Number of Sequences: 62578
Number of extensions: 189614
Number of successful extensions: 540
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 526
Number of HSP's gapped (non-prelim): 25
length of query: 345
length of database: 14,973,337
effective HSP length: 100
effective length of query: 245
effective length of database: 8,715,537
effective search space: 2135306565
effective search space used: 2135306565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)