Query 019163
Match_columns 345
No_of_seqs 229 out of 787
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 07:12:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019163.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019163hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00338 BRLZ basic region l 99.4 2.3E-12 4.9E-17 97.8 9.5 62 180-241 2-63 (65)
2 PF00170 bZIP_1: bZIP transcri 99.3 2.4E-11 5.3E-16 92.1 9.4 61 182-242 4-64 (64)
3 PF07716 bZIP_2: Basic region 99.1 8.4E-10 1.8E-14 81.6 8.4 52 180-232 2-53 (54)
4 KOG4005 Transcription factor X 99.1 1.6E-09 3.4E-14 102.9 12.2 74 181-254 67-140 (292)
5 KOG4343 bZIP transcription fac 99.1 2.7E-10 5.9E-15 117.2 7.3 64 183-246 281-344 (655)
6 KOG3584 cAMP response element 99.0 1.1E-09 2.3E-14 106.3 6.7 53 182-234 290-342 (348)
7 KOG0709 CREB/ATF family transc 98.8 1.3E-08 2.9E-13 103.5 7.5 75 173-254 244-318 (472)
8 PF03131 bZIP_Maf: bZIP Maf tr 98.1 7.4E-08 1.6E-12 78.3 -5.4 69 169-242 21-89 (92)
9 KOG0837 Transcriptional activa 97.8 6.5E-05 1.4E-09 72.5 7.9 45 188-232 211-255 (279)
10 KOG4196 bZIP transcription fac 97.2 0.0078 1.7E-07 53.2 11.9 50 182-231 52-101 (135)
11 KOG4571 Activating transcripti 97.1 0.0019 4.1E-08 63.3 8.1 54 180-233 223-277 (294)
12 PF10146 zf-C4H2: Zinc finger- 96.9 0.17 3.6E-06 48.2 19.1 81 198-278 26-107 (230)
13 KOG3863 bZIP transcription fac 96.5 0.0068 1.5E-07 64.4 7.4 64 183-253 490-553 (604)
14 PF11559 ADIP: Afadin- and alp 96.4 0.16 3.4E-06 44.2 14.0 76 200-275 48-123 (151)
15 KOG3119 Basic region leucine z 96.4 0.017 3.8E-07 55.5 8.8 47 187-233 198-244 (269)
16 PF06156 DUF972: Protein of un 95.5 0.072 1.6E-06 45.3 7.9 50 204-253 8-57 (107)
17 PF06005 DUF904: Protein of un 95.5 0.39 8.4E-06 38.3 11.5 50 204-253 4-53 (72)
18 PRK13169 DNA replication intia 95.3 0.094 2E-06 45.0 7.8 49 205-253 9-57 (110)
19 PF14197 Cep57_CLD_2: Centroso 95.1 0.4 8.7E-06 37.9 10.4 63 208-271 2-65 (69)
20 PF14662 CCDC155: Coiled-coil 95.1 0.2 4.4E-06 46.9 9.9 70 205-278 9-78 (193)
21 PRK10884 SH3 domain-containing 95.0 0.35 7.6E-06 45.3 11.4 41 226-266 126-166 (206)
22 PF08614 ATG16: Autophagy prot 94.9 0.68 1.5E-05 42.1 12.7 66 183-248 116-181 (194)
23 PF14197 Cep57_CLD_2: Centroso 94.6 0.41 8.9E-06 37.8 9.2 61 215-275 2-62 (69)
24 PRK15422 septal ring assembly 94.4 0.62 1.3E-05 38.2 10.0 43 204-246 4-46 (79)
25 COG3074 Uncharacterized protei 94.2 0.91 2E-05 36.9 10.4 24 205-228 5-28 (79)
26 TIGR02449 conserved hypothetic 93.7 0.5 1.1E-05 37.3 8.0 43 206-248 9-51 (65)
27 PF13747 DUF4164: Domain of un 93.7 1.7 3.6E-05 35.8 11.4 70 183-252 11-80 (89)
28 PF05266 DUF724: Protein of un 93.3 3.6 7.8E-05 38.2 14.3 65 180-244 86-150 (190)
29 PF06005 DUF904: Protein of un 93.2 1.7 3.6E-05 34.7 10.3 46 207-252 14-59 (72)
30 PF15070 GOLGA2L5: Putative go 93.1 2.7 5.8E-05 45.3 14.9 90 183-273 101-215 (617)
31 COG1579 Zn-ribbon protein, pos 92.7 7.6 0.00016 37.6 15.9 48 206-253 91-138 (239)
32 PF04102 SlyX: SlyX; InterPro 92.3 0.71 1.5E-05 36.0 7.0 49 204-252 4-52 (69)
33 KOG4807 F-actin binding protei 92.1 3.2 6.8E-05 43.4 13.1 92 200-291 389-505 (593)
34 PF12325 TMF_TATA_bd: TATA ele 92.0 3.6 7.7E-05 35.8 11.6 36 209-244 28-63 (120)
35 TIGR02449 conserved hypothetic 91.9 2.2 4.8E-05 33.7 9.4 44 206-249 2-45 (65)
36 COG4467 Regulator of replicati 91.7 0.66 1.4E-05 40.2 6.7 46 205-250 9-54 (114)
37 PF10224 DUF2205: Predicted co 91.6 1.3 2.8E-05 36.2 8.0 46 207-252 19-64 (80)
38 PF10473 CENP-F_leu_zip: Leuci 91.6 9.8 0.00021 34.0 14.8 72 183-254 31-102 (140)
39 PF08614 ATG16: Autophagy prot 91.5 2.7 5.8E-05 38.3 11.0 64 203-266 115-178 (194)
40 COG2433 Uncharacterized conser 91.5 1.7 3.7E-05 47.0 10.9 68 206-273 424-508 (652)
41 PF07989 Microtub_assoc: Micro 91.4 3.2 6.9E-05 33.3 10.0 49 206-254 2-58 (75)
42 PF10186 Atg14: UV radiation r 91.4 12 0.00025 34.8 15.2 40 204-243 63-102 (302)
43 PRK00295 hypothetical protein; 91.3 1.6 3.4E-05 34.3 8.0 36 205-240 6-41 (68)
44 PF14662 CCDC155: Coiled-coil 91.3 4.3 9.4E-05 38.2 12.1 42 207-248 98-139 (193)
45 PRK13729 conjugal transfer pil 91.1 1.1 2.4E-05 47.0 9.0 44 205-248 77-120 (475)
46 PRK02793 phi X174 lysis protei 91.0 1.5 3.2E-05 34.8 7.6 35 204-238 8-42 (72)
47 TIGR02894 DNA_bind_RsfA transc 91.0 2.4 5.2E-05 38.9 9.9 52 204-255 87-141 (161)
48 PRK02119 hypothetical protein; 90.9 1.5 3.2E-05 34.9 7.6 36 204-239 9-44 (73)
49 PRK00736 hypothetical protein; 90.9 1.6 3.5E-05 34.2 7.7 36 204-239 5-40 (68)
50 PRK04325 hypothetical protein; 90.9 1.5 3.3E-05 34.9 7.6 34 205-238 10-43 (74)
51 PF10805 DUF2730: Protein of u 90.7 2.7 5.8E-05 35.3 9.4 54 205-258 43-98 (106)
52 PF04111 APG6: Autophagy prote 90.6 9.6 0.00021 37.6 14.5 80 196-275 56-135 (314)
53 PF02403 Seryl_tRNA_N: Seryl-t 90.6 8.1 0.00018 31.6 12.0 46 208-253 40-88 (108)
54 PF12711 Kinesin-relat_1: Kine 90.5 5.2 0.00011 33.3 10.6 58 216-275 22-85 (86)
55 PRK10884 SH3 domain-containing 90.4 6.4 0.00014 37.0 12.5 41 204-244 125-165 (206)
56 PRK04406 hypothetical protein; 90.3 1.7 3.8E-05 34.8 7.6 31 205-235 12-42 (75)
57 PRK11637 AmiB activator; Provi 90.1 10 0.00023 38.2 14.6 50 203-252 67-116 (428)
58 PRK11637 AmiB activator; Provi 90.0 12 0.00025 37.9 14.8 31 192-222 186-216 (428)
59 PRK09039 hypothetical protein; 89.9 3 6.4E-05 41.6 10.4 55 213-273 139-196 (343)
60 PF10473 CENP-F_leu_zip: Leuci 89.8 14 0.00031 33.0 14.0 51 216-266 57-107 (140)
61 PRK09039 hypothetical protein; 89.7 14 0.00031 36.9 15.0 64 209-272 121-184 (343)
62 PF10481 CENP-F_N: Cenp-F N-te 89.5 5.5 0.00012 39.6 11.7 74 200-273 49-122 (307)
63 PF05911 DUF869: Plant protein 89.5 5.5 0.00012 44.2 12.9 50 228-277 137-207 (769)
64 PF11559 ADIP: Afadin- and alp 89.1 14 0.00031 32.0 15.4 61 184-244 46-106 (151)
65 PRK00846 hypothetical protein; 88.8 2.8 6.2E-05 34.1 7.8 32 204-235 13-44 (77)
66 KOG0239 Kinesin (KAR3 subfamil 88.6 7.2 0.00016 42.6 13.0 71 206-276 243-316 (670)
67 KOG0288 WD40 repeat protein Ti 88.5 10 0.00023 39.6 13.3 74 183-256 27-105 (459)
68 COG3074 Uncharacterized protei 88.4 3.4 7.5E-05 33.6 7.9 46 205-250 19-64 (79)
69 KOG0982 Centrosomal protein Nu 88.4 8.1 0.00018 40.6 12.5 50 205-254 298-347 (502)
70 COG4026 Uncharacterized protei 88.3 5.7 0.00012 38.8 10.7 32 205-236 136-167 (290)
71 PRK04863 mukB cell division pr 88.3 16 0.00035 43.4 16.2 93 183-275 321-426 (1486)
72 PF08647 BRE1: BRE1 E3 ubiquit 88.2 13 0.00029 30.6 13.5 78 186-263 6-84 (96)
73 COG4942 Membrane-bound metallo 88.0 12 0.00025 39.1 13.4 73 183-255 38-110 (420)
74 TIGR03752 conj_TIGR03752 integ 87.9 3.2 7E-05 43.6 9.4 47 207-253 76-123 (472)
75 PF13851 GAS: Growth-arrest sp 87.7 23 0.00051 32.9 14.3 57 183-239 72-128 (201)
76 PF07888 CALCOCO1: Calcium bin 87.3 18 0.00039 38.9 14.6 65 183-247 150-214 (546)
77 PF09726 Macoilin: Transmembra 87.2 14 0.0003 40.6 14.1 39 207-245 541-579 (697)
78 PF10211 Ax_dynein_light: Axon 87.2 19 0.00041 33.2 13.0 39 206-244 122-160 (189)
79 COG1579 Zn-ribbon protein, pos 87.0 24 0.00052 34.2 14.1 49 183-231 31-79 (239)
80 PF10186 Atg14: UV radiation r 86.9 13 0.00028 34.5 12.0 48 205-252 57-104 (302)
81 KOG0243 Kinesin-like protein [ 86.8 11 0.00023 43.3 13.2 25 204-228 448-472 (1041)
82 KOG4005 Transcription factor X 86.3 17 0.00036 35.9 12.6 87 180-269 70-159 (292)
83 PF04880 NUDE_C: NUDE protein, 86.2 1.2 2.6E-05 40.9 4.7 53 206-262 2-54 (166)
84 PF09738 DUF2051: Double stran 86.1 15 0.00032 36.6 12.5 66 172-258 84-149 (302)
85 PF02183 HALZ: Homeobox associ 85.9 2.6 5.7E-05 30.9 5.5 35 216-250 3-37 (45)
86 PF11932 DUF3450: Protein of u 85.8 32 0.00068 32.4 14.9 22 207-228 59-80 (251)
87 KOG0977 Nuclear envelope prote 85.7 22 0.00047 38.3 14.2 60 194-253 131-190 (546)
88 PRK15422 septal ring assembly 85.6 6.1 0.00013 32.5 8.0 46 206-251 20-65 (79)
89 PF08317 Spc7: Spc7 kinetochor 85.5 12 0.00027 36.7 11.6 42 206-247 211-252 (325)
90 PRK13169 DNA replication intia 85.4 6.4 0.00014 33.9 8.4 38 208-245 5-42 (110)
91 PF12718 Tropomyosin_1: Tropom 85.1 16 0.00034 32.4 11.0 56 201-256 32-90 (143)
92 KOG1962 B-cell receptor-associ 85.1 15 0.00033 35.1 11.6 45 209-253 149-193 (216)
93 PF10211 Ax_dynein_light: Axon 85.1 17 0.00036 33.5 11.6 9 266-274 169-177 (189)
94 KOG1414 Transcriptional activa 84.9 0.037 8.1E-07 55.8 -6.2 52 181-232 152-207 (395)
95 PF06156 DUF972: Protein of un 84.8 6.6 0.00014 33.5 8.2 41 208-248 5-45 (107)
96 PF05837 CENP-H: Centromere pr 84.8 8 0.00017 32.5 8.6 40 214-253 6-45 (106)
97 KOG0250 DNA repair protein RAD 84.6 24 0.00051 40.7 14.5 54 199-252 374-428 (1074)
98 KOG0980 Actin-binding protein 84.5 26 0.00057 39.8 14.5 79 174-252 380-458 (980)
99 PF04111 APG6: Autophagy prote 84.5 14 0.0003 36.6 11.5 49 205-253 44-92 (314)
100 PF07888 CALCOCO1: Calcium bin 84.4 36 0.00077 36.7 15.1 45 207-251 188-232 (546)
101 KOG0977 Nuclear envelope prote 84.4 13 0.00029 39.8 12.0 51 226-276 142-192 (546)
102 PHA02562 46 endonuclease subun 84.4 31 0.00066 35.3 14.3 37 208-244 362-398 (562)
103 PRK05431 seryl-tRNA synthetase 84.3 23 0.00051 36.3 13.4 65 209-280 40-107 (425)
104 PF05700 BCAS2: Breast carcino 84.3 18 0.00039 33.8 11.7 75 204-278 136-214 (221)
105 PF09304 Cortex-I_coil: Cortex 83.9 17 0.00037 31.5 10.3 48 191-238 24-71 (107)
106 PF09726 Macoilin: Transmembra 83.6 35 0.00076 37.6 15.1 13 267-279 643-655 (697)
107 KOG0995 Centromere-associated 83.6 33 0.00071 37.2 14.4 46 203-248 279-324 (581)
108 PF03962 Mnd1: Mnd1 family; I 83.5 19 0.00041 33.2 11.3 13 264-276 139-151 (188)
109 PF10212 TTKRSYEDQ: Predicted 83.2 36 0.00077 36.5 14.4 64 211-275 434-516 (518)
110 KOG4360 Uncharacterized coiled 83.1 13 0.00029 39.8 11.2 51 204-254 219-269 (596)
111 PF08317 Spc7: Spc7 kinetochor 83.1 44 0.00095 32.9 14.3 7 39-45 25-31 (325)
112 KOG0946 ER-Golgi vesicle-tethe 83.1 10 0.00022 42.7 10.6 73 203-282 649-721 (970)
113 PF05266 DUF724: Protein of un 82.6 22 0.00048 33.0 11.4 47 198-244 111-157 (190)
114 PRK13922 rod shape-determining 82.5 22 0.00047 33.7 11.6 40 234-277 71-110 (276)
115 PF08232 Striatin: Striatin fa 82.4 10 0.00022 33.2 8.7 38 229-266 15-52 (134)
116 COG2433 Uncharacterized conser 82.3 18 0.00038 39.6 11.9 61 188-248 419-490 (652)
117 PF15294 Leu_zip: Leucine zipp 82.2 4.7 0.0001 39.8 7.2 45 209-253 130-174 (278)
118 KOG0971 Microtubule-associated 82.0 17 0.00037 41.6 12.0 85 192-276 398-506 (1243)
119 KOG4643 Uncharacterized coiled 81.3 8.2 0.00018 44.2 9.4 77 203-279 263-341 (1195)
120 PF04849 HAP1_N: HAP1 N-termin 81.1 14 0.0003 37.1 10.0 45 207-251 220-267 (306)
121 PF12325 TMF_TATA_bd: TATA ele 81.1 37 0.00079 29.6 12.0 12 262-273 98-109 (120)
122 PRK13922 rod shape-determining 81.1 12 0.00025 35.5 9.2 37 205-245 70-106 (276)
123 KOG1029 Endocytic adaptor prot 81.1 20 0.00044 40.4 12.0 10 100-109 163-172 (1118)
124 PF06428 Sec2p: GDP/GTP exchan 81.0 2.2 4.7E-05 36.1 3.8 73 206-280 10-85 (100)
125 PF15035 Rootletin: Ciliary ro 80.9 39 0.00084 31.2 12.3 41 226-273 68-108 (182)
126 PF11932 DUF3450: Protein of u 80.9 50 0.0011 31.1 15.3 47 207-253 52-98 (251)
127 TIGR03752 conj_TIGR03752 integ 80.7 13 0.00028 39.4 10.0 27 207-233 69-95 (472)
128 PF04849 HAP1_N: HAP1 N-termin 80.6 11 0.00023 37.8 9.1 47 204-250 241-287 (306)
129 TIGR00219 mreC rod shape-deter 80.4 7.6 0.00016 37.8 7.9 17 214-230 69-85 (283)
130 COG3883 Uncharacterized protei 80.3 28 0.0006 34.3 11.6 48 205-252 39-86 (265)
131 TIGR00219 mreC rod shape-deter 79.9 16 0.00034 35.6 9.9 40 235-277 69-108 (283)
132 PLN02320 seryl-tRNA synthetase 79.9 45 0.00097 35.6 13.8 65 210-281 106-172 (502)
133 PF07106 TBPIP: Tat binding pr 79.8 14 0.0003 32.8 8.7 51 203-253 85-137 (169)
134 PF05667 DUF812: Protein of un 79.7 25 0.00055 38.0 12.1 49 207-255 331-379 (594)
135 KOG1318 Helix loop helix trans 79.5 18 0.0004 37.6 10.6 37 180-216 226-262 (411)
136 PF00038 Filament: Intermediat 79.4 59 0.0013 31.0 15.1 38 215-252 213-250 (312)
137 PF12777 MT: Microtubule-bindi 79.4 12 0.00026 37.0 9.0 61 207-267 231-291 (344)
138 PRK10698 phage shock protein P 79.3 29 0.00063 32.7 11.2 59 203-261 98-156 (222)
139 PF06785 UPF0242: Uncharacteri 79.2 42 0.00091 34.6 12.7 50 199-248 122-171 (401)
140 KOG4571 Activating transcripti 79.1 4.7 0.0001 40.1 6.0 29 226-254 249-277 (294)
141 KOG0996 Structural maintenance 79.1 51 0.0011 38.7 14.6 16 103-118 736-751 (1293)
142 KOG1414 Transcriptional activa 79.0 0.33 7.2E-06 49.0 -1.9 44 181-224 283-326 (395)
143 PF00769 ERM: Ezrin/radixin/mo 79.0 62 0.0013 31.0 16.0 66 209-274 52-117 (246)
144 PF10481 CENP-F_N: Cenp-F N-te 78.9 49 0.0011 33.2 12.8 57 214-277 77-133 (307)
145 PLN02678 seryl-tRNA synthetase 78.9 36 0.00077 35.6 12.6 66 209-281 45-113 (448)
146 KOG0933 Structural maintenance 78.5 43 0.00094 38.7 13.7 48 207-254 790-837 (1174)
147 PF05103 DivIVA: DivIVA protei 77.9 1.4 3E-05 36.7 1.8 45 204-248 25-69 (131)
148 PRK02224 chromosome segregatio 77.8 74 0.0016 34.8 15.1 15 238-252 578-592 (880)
149 PF00038 Filament: Intermediat 77.4 68 0.0015 30.6 16.6 33 201-233 220-252 (312)
150 PRK05431 seryl-tRNA synthetase 77.2 38 0.00082 34.8 12.1 53 181-238 10-62 (425)
151 PF12709 Kinetocho_Slk19: Cent 77.2 12 0.00025 31.4 6.9 39 202-240 40-78 (87)
152 PF07106 TBPIP: Tat binding pr 77.2 9 0.0002 33.9 6.8 28 206-233 81-108 (169)
153 PF12711 Kinesin-relat_1: Kine 77.1 8 0.00017 32.2 5.9 21 255-276 47-67 (86)
154 KOG2391 Vacuolar sorting prote 77.1 53 0.0012 33.8 12.8 41 211-251 225-265 (365)
155 PRK00888 ftsB cell division pr 76.6 12 0.00025 31.7 6.9 30 223-252 32-61 (105)
156 TIGR02977 phageshock_pspA phag 76.5 41 0.0009 31.2 11.2 60 202-261 97-156 (219)
157 PF13094 CENP-Q: CENP-Q, a CEN 76.1 32 0.0007 30.2 9.9 54 207-260 23-76 (160)
158 PF15290 Syntaphilin: Golgi-lo 75.9 23 0.00049 35.5 9.7 58 206-277 77-134 (305)
159 PHA03155 hypothetical protein; 75.9 28 0.00061 30.6 9.1 25 205-229 9-33 (115)
160 COG2900 SlyX Uncharacterized p 75.9 17 0.00037 29.5 7.3 27 204-230 8-34 (72)
161 PF12718 Tropomyosin_1: Tropom 75.8 50 0.0011 29.2 11.0 44 205-248 15-58 (143)
162 PF09730 BicD: Microtubule-ass 75.8 34 0.00073 38.0 11.9 47 207-253 72-118 (717)
163 PF04728 LPP: Lipoprotein leuc 75.7 25 0.00054 27.3 7.9 35 206-240 5-39 (56)
164 PF02183 HALZ: Homeobox associ 75.6 13 0.00028 27.3 6.0 22 223-244 3-24 (45)
165 KOG1899 LAR transmembrane tyro 75.5 38 0.00082 37.5 11.9 66 187-254 128-196 (861)
166 PF15058 Speriolin_N: Sperioli 75.5 5.2 0.00011 37.9 4.9 40 232-271 12-51 (200)
167 KOG0250 DNA repair protein RAD 75.5 69 0.0015 37.2 14.4 61 203-263 364-426 (1074)
168 KOG0161 Myosin class II heavy 75.5 36 0.00078 41.6 12.8 64 190-253 1646-1709(1930)
169 PF15030 DUF4527: Protein of u 75.4 80 0.0017 31.3 13.0 37 223-259 56-92 (277)
170 PF01166 TSC22: TSC-22/dip/bun 75.1 4.3 9.4E-05 31.8 3.6 24 221-244 17-40 (59)
171 PHA03162 hypothetical protein; 75.1 13 0.00027 33.5 7.0 28 201-228 10-37 (135)
172 PF12808 Mto2_bdg: Micro-tubul 75.0 8.8 0.00019 29.3 5.2 45 201-248 1-45 (52)
173 smart00338 BRLZ basic region l 75.0 23 0.00049 26.8 7.5 27 226-252 27-53 (65)
174 KOG1962 B-cell receptor-associ 75.0 20 0.00044 34.3 8.8 39 216-254 149-187 (216)
175 PF05377 FlaC_arch: Flagella a 74.9 16 0.00035 28.2 6.6 36 206-255 2-37 (55)
176 PF14817 HAUS5: HAUS augmin-li 74.8 45 0.00098 36.5 12.4 32 207-238 82-113 (632)
177 PF04065 Not3: Not1 N-terminal 74.6 20 0.00044 34.5 8.8 103 165-277 98-207 (233)
178 KOG1853 LIS1-interacting prote 74.6 69 0.0015 32.1 12.5 38 203-240 90-127 (333)
179 KOG1103 Predicted coiled-coil 74.0 7 0.00015 40.5 5.8 75 192-267 226-300 (561)
180 PF08172 CASP_C: CASP C termin 73.8 14 0.0003 35.7 7.5 39 203-248 92-130 (248)
181 KOG4674 Uncharacterized conser 73.8 19 0.0004 43.7 9.8 48 207-254 1253-1300(1822)
182 PF07889 DUF1664: Protein of u 73.7 26 0.00056 30.9 8.6 43 236-278 58-100 (126)
183 PF02403 Seryl_tRNA_N: Seryl-t 73.7 48 0.001 27.1 11.6 90 180-272 2-100 (108)
184 cd07596 BAR_SNX The Bin/Amphip 73.6 63 0.0014 28.3 14.7 80 189-271 116-204 (218)
185 PF04012 PspA_IM30: PspA/IM30 73.3 48 0.001 30.3 10.6 55 206-260 100-154 (221)
186 PF07798 DUF1640: Protein of u 73.1 37 0.00079 30.6 9.7 17 261-277 132-148 (177)
187 PRK10803 tol-pal system protei 73.0 31 0.00068 33.1 9.7 46 205-250 55-100 (263)
188 TIGR03495 phage_LysB phage lys 72.9 61 0.0013 28.9 10.8 68 209-276 31-98 (135)
189 PF07989 Microtub_assoc: Micro 72.7 24 0.00052 28.3 7.5 28 229-256 4-31 (75)
190 PF09755 DUF2046: Uncharacteri 72.7 49 0.0011 33.4 11.2 21 207-227 44-64 (310)
191 PRK13729 conjugal transfer pil 72.6 17 0.00038 38.4 8.4 54 206-273 71-124 (475)
192 cd07666 BAR_SNX7 The Bin/Amphi 72.6 75 0.0016 30.8 12.1 73 185-267 151-225 (243)
193 KOG4001 Axonemal dynein light 72.6 44 0.00096 32.4 10.4 51 193-243 170-224 (259)
194 PF06785 UPF0242: Uncharacteri 72.5 24 0.00052 36.3 9.1 74 183-260 75-162 (401)
195 KOG0288 WD40 repeat protein Ti 72.4 77 0.0017 33.5 12.8 40 208-247 31-70 (459)
196 PRK14127 cell division protein 72.3 28 0.00061 30.0 8.3 22 211-232 44-65 (109)
197 PF03962 Mnd1: Mnd1 family; I 72.0 33 0.00072 31.6 9.3 14 203-216 82-95 (188)
198 PF09325 Vps5: Vps5 C terminal 71.9 77 0.0017 28.6 11.9 25 213-237 165-189 (236)
199 TIGR02209 ftsL_broad cell divi 71.2 27 0.00059 27.2 7.4 39 218-256 24-62 (85)
200 PF10205 KLRAQ: Predicted coil 70.5 69 0.0015 27.5 10.5 15 260-274 54-68 (102)
201 PF10805 DUF2730: Protein of u 70.4 64 0.0014 27.1 9.9 52 203-254 34-87 (106)
202 PF10146 zf-C4H2: Zinc finger- 70.4 91 0.002 29.9 12.1 60 207-266 42-102 (230)
203 PF05529 Bap31: B-cell recepto 70.3 55 0.0012 29.5 10.2 34 240-273 155-188 (192)
204 PF06419 COG6: Conserved oligo 70.2 92 0.002 33.6 13.4 72 203-274 44-118 (618)
205 PF07200 Mod_r: Modifier of ru 70.1 71 0.0015 27.5 12.9 53 188-240 32-84 (150)
206 TIGR00414 serS seryl-tRNA synt 70.0 67 0.0014 33.0 11.8 46 208-253 41-90 (418)
207 PF05667 DUF812: Protein of un 69.9 1.1E+02 0.0023 33.3 13.8 38 236-273 444-481 (594)
208 COG1196 Smc Chromosome segrega 69.7 1.4E+02 0.003 34.4 15.4 15 104-118 635-649 (1163)
209 KOG1265 Phospholipase C [Lipid 69.6 1.3E+02 0.0029 34.8 14.6 70 184-253 1029-1103(1189)
210 PF06810 Phage_GP20: Phage min 69.5 65 0.0014 28.9 10.4 60 207-266 30-92 (155)
211 COG4026 Uncharacterized protei 69.5 1.2E+02 0.0026 29.9 13.3 53 200-252 138-190 (290)
212 TIGR00414 serS seryl-tRNA synt 69.2 1.4E+02 0.0031 30.6 14.3 77 203-279 29-109 (418)
213 KOG4643 Uncharacterized coiled 69.2 79 0.0017 36.8 12.9 61 183-243 373-433 (1195)
214 PF07851 TMPIT: TMPIT-like pro 69.1 65 0.0014 32.7 11.3 37 204-240 4-40 (330)
215 PF10174 Cast: RIM-binding pro 68.9 1.2E+02 0.0025 34.2 14.1 70 206-275 310-379 (775)
216 PF12128 DUF3584: Protein of u 68.7 1.3E+02 0.0028 34.9 14.9 54 183-236 785-841 (1201)
217 PF04871 Uso1_p115_C: Uso1 / p 68.6 81 0.0018 27.8 10.6 11 270-280 105-115 (136)
218 COG4372 Uncharacterized protei 68.5 1.7E+02 0.0036 31.1 15.5 51 194-244 127-177 (499)
219 PF00170 bZIP_1: bZIP transcri 68.4 45 0.00097 25.1 7.9 27 226-252 27-53 (64)
220 KOG3650 Predicted coiled-coil 68.3 17 0.00038 31.5 6.1 44 209-252 61-104 (120)
221 PF03980 Nnf1: Nnf1 ; InterPr 68.2 9.3 0.0002 31.6 4.4 32 200-231 76-107 (109)
222 PF09304 Cortex-I_coil: Cortex 68.2 81 0.0018 27.4 11.4 55 196-250 22-76 (107)
223 PF15058 Speriolin_N: Sperioli 68.2 9.7 0.00021 36.1 5.0 34 206-247 7-40 (200)
224 PF08172 CASP_C: CASP C termin 68.1 21 0.00046 34.4 7.4 26 206-231 109-134 (248)
225 PF05812 Herpes_BLRF2: Herpesv 68.1 8 0.00017 33.9 4.1 27 203-229 2-28 (118)
226 PF08581 Tup_N: Tup N-terminal 67.9 66 0.0014 26.2 12.4 70 204-276 4-73 (79)
227 PF12999 PRKCSH-like: Glucosid 67.7 40 0.00087 31.4 8.8 64 163-231 109-173 (176)
228 PTZ00186 heat shock 70 kDa pre 67.7 19 0.00042 39.0 7.8 9 146-154 494-502 (657)
229 PF15294 Leu_zip: Leucine zipp 67.5 25 0.00054 34.9 7.8 51 228-278 128-178 (278)
230 PRK02119 hypothetical protein; 67.4 53 0.0011 26.1 8.3 28 206-233 4-31 (73)
231 COG5293 Predicted ATPase [Gene 67.4 1.3E+02 0.0028 32.5 13.3 78 186-263 330-417 (591)
232 PRK04406 hypothetical protein; 67.0 58 0.0013 26.1 8.6 28 206-233 6-33 (75)
233 COG3879 Uncharacterized protei 66.9 57 0.0012 32.0 10.0 19 263-281 92-110 (247)
234 PF08606 Prp19: Prp19/Pso4-lik 66.7 44 0.00096 27.0 7.7 33 223-255 6-38 (70)
235 PF02841 GBP_C: Guanylate-bind 66.6 1.3E+02 0.0028 29.1 13.6 11 263-273 287-297 (297)
236 PF01166 TSC22: TSC-22/dip/bun 66.5 10 0.00022 29.7 4.0 23 204-226 21-43 (59)
237 PF00261 Tropomyosin: Tropomyo 66.5 1.2E+02 0.0025 28.6 13.1 23 206-228 136-158 (237)
238 COG4942 Membrane-bound metallo 66.4 1.3E+02 0.0027 31.7 12.9 64 190-253 38-101 (420)
239 smart00787 Spc7 Spc7 kinetocho 66.2 1.5E+02 0.0032 29.7 14.8 41 205-245 205-245 (312)
240 PF15619 Lebercilin: Ciliary p 66.1 1.2E+02 0.0025 28.4 13.0 15 262-276 173-187 (194)
241 KOG0804 Cytoplasmic Zn-finger 66.1 1.1E+02 0.0025 32.5 12.6 9 99-107 214-222 (493)
242 PF09728 Taxilin: Myosin-like 66.0 59 0.0013 32.2 10.2 28 223-250 242-269 (309)
243 PF04977 DivIC: Septum formati 65.5 31 0.00067 26.1 6.5 30 222-251 21-50 (80)
244 PF15035 Rootletin: Ciliary ro 65.4 1.1E+02 0.0024 28.2 11.3 54 205-258 68-121 (182)
245 KOG0996 Structural maintenance 65.3 95 0.0021 36.6 12.7 84 197-282 535-618 (1293)
246 KOG0161 Myosin class II heavy 65.1 64 0.0014 39.7 11.9 68 206-273 1641-1708(1930)
247 KOG0933 Structural maintenance 64.9 1.7E+02 0.0036 34.3 14.3 46 207-252 818-863 (1174)
248 PF07558 Shugoshin_N: Shugoshi 64.8 6.7 0.00015 28.7 2.6 32 217-248 13-44 (46)
249 KOG2010 Double stranded RNA bi 64.7 31 0.00066 35.5 8.0 64 181-252 125-188 (405)
250 KOG2129 Uncharacterized conser 64.5 19 0.00041 38.0 6.7 64 208-273 47-113 (552)
251 KOG0976 Rho/Rac1-interacting s 64.3 77 0.0017 36.3 11.5 48 205-252 107-154 (1265)
252 TIGR00606 rad50 rad50. This fa 64.3 1.2E+02 0.0025 35.5 13.5 38 208-245 892-929 (1311)
253 COG1792 MreC Cell shape-determ 64.0 51 0.0011 32.3 9.2 40 234-277 68-107 (284)
254 PF04999 FtsL: Cell division p 63.9 39 0.00085 27.2 7.2 43 216-258 33-75 (97)
255 KOG2199 Signal transducing ada 63.9 85 0.0018 33.1 11.1 45 178-222 290-335 (462)
256 KOG4603 TBP-1 interacting prot 63.7 61 0.0013 30.7 9.2 29 216-244 84-112 (201)
257 PF07926 TPR_MLP1_2: TPR/MLP1/ 63.6 96 0.0021 26.7 10.4 26 237-269 103-128 (132)
258 PF14645 Chibby: Chibby family 63.6 26 0.00057 30.2 6.4 24 209-232 76-99 (116)
259 PF10498 IFT57: Intra-flagella 63.6 89 0.0019 31.8 11.1 23 255-278 331-353 (359)
260 PF13851 GAS: Growth-arrest sp 63.5 1.3E+02 0.0028 28.0 12.6 52 200-251 82-133 (201)
261 PF10226 DUF2216: Uncharacteri 63.4 1.2E+02 0.0025 29.0 11.0 95 160-254 8-144 (195)
262 PF09744 Jnk-SapK_ap_N: JNK_SA 63.3 1.2E+02 0.0026 27.6 12.3 31 214-244 85-115 (158)
263 PF10168 Nup88: Nuclear pore c 63.3 85 0.0019 34.7 11.7 37 202-238 577-613 (717)
264 PF10234 Cluap1: Clusterin-ass 63.2 85 0.0018 31.0 10.6 8 41-48 5-12 (267)
265 PF05529 Bap31: B-cell recepto 62.9 73 0.0016 28.7 9.5 34 219-252 155-188 (192)
266 COG4467 Regulator of replicati 62.9 42 0.00091 29.4 7.4 41 208-248 5-45 (114)
267 KOG2077 JNK/SAPK-associated pr 62.7 35 0.00076 37.5 8.4 60 180-255 314-373 (832)
268 PF11544 Spc42p: Spindle pole 62.6 36 0.00077 28.0 6.6 37 208-244 9-45 (76)
269 PF06810 Phage_GP20: Phage min 62.6 1.2E+02 0.0025 27.3 10.7 32 204-235 34-68 (155)
270 TIGR00606 rad50 rad50. This fa 62.6 2.1E+02 0.0045 33.6 15.1 44 206-249 883-926 (1311)
271 PF12128 DUF3584: Protein of u 62.3 2.1E+02 0.0046 33.2 15.1 27 203-229 677-703 (1201)
272 smart00787 Spc7 Spc7 kinetocho 62.2 1.7E+02 0.0038 29.1 14.7 42 207-248 147-188 (312)
273 PF05700 BCAS2: Breast carcino 62.1 47 0.001 31.1 8.3 32 223-254 173-204 (221)
274 KOG4797 Transcriptional regula 61.9 18 0.00039 31.8 5.0 28 218-245 67-94 (123)
275 PF06008 Laminin_I: Laminin Do 61.8 90 0.0019 29.6 10.3 50 205-254 46-95 (264)
276 TIGR03185 DNA_S_dndD DNA sulfu 61.8 1E+02 0.0023 33.0 11.8 40 205-244 210-249 (650)
277 PRK00888 ftsB cell division pr 61.6 37 0.0008 28.6 6.8 33 200-232 30-62 (105)
278 cd07627 BAR_Vps5p The Bin/Amph 61.5 1.4E+02 0.003 27.7 12.6 30 194-223 105-134 (216)
279 KOG4403 Cell surface glycoprot 61.3 66 0.0014 34.3 9.8 58 218-278 259-320 (575)
280 KOG2391 Vacuolar sorting prote 61.1 71 0.0015 32.9 9.8 46 190-237 227-272 (365)
281 TIGR02231 conserved hypothetic 61.0 1.2E+02 0.0025 31.6 11.8 8 289-296 205-212 (525)
282 PF01920 Prefoldin_2: Prefoldi 61.0 28 0.0006 27.7 5.8 23 207-229 65-87 (106)
283 cd07596 BAR_SNX The Bin/Amphip 60.9 1.2E+02 0.0025 26.6 11.5 81 183-273 96-183 (218)
284 PF09755 DUF2046: Uncharacteri 60.7 2E+02 0.0042 29.2 14.8 16 208-223 110-125 (310)
285 COG2919 Septum formation initi 60.5 1.1E+02 0.0023 26.2 11.2 66 183-254 21-86 (117)
286 PRK06569 F0F1 ATP synthase sub 60.5 1.4E+02 0.0029 27.3 12.9 45 182-226 40-84 (155)
287 KOG4343 bZIP transcription fac 60.4 49 0.0011 36.0 8.9 63 180-253 275-337 (655)
288 PF05483 SCP-1: Synaptonemal c 60.4 1.2E+02 0.0026 34.0 11.9 40 213-252 589-628 (786)
289 PF14988 DUF4515: Domain of un 60.4 1.1E+02 0.0024 28.7 10.5 70 192-261 129-206 (206)
290 PF05377 FlaC_arch: Flagella a 60.2 35 0.00075 26.4 5.8 29 206-234 9-37 (55)
291 PF04102 SlyX: SlyX; InterPro 60.1 64 0.0014 25.1 7.5 25 209-233 2-26 (69)
292 PF04871 Uso1_p115_C: Uso1 / p 60.0 1.2E+02 0.0026 26.7 10.5 24 204-227 27-50 (136)
293 PF14817 HAUS5: HAUS augmin-li 59.9 1.8E+02 0.0039 32.0 13.3 55 193-247 75-129 (632)
294 PF04859 DUF641: Plant protein 59.9 29 0.00063 30.8 6.2 37 208-244 91-127 (131)
295 PF07716 bZIP_2: Basic region 59.8 29 0.00063 25.5 5.3 25 228-252 28-52 (54)
296 KOG3119 Basic region leucine z 59.8 55 0.0012 31.8 8.6 63 203-279 193-255 (269)
297 PF14915 CCDC144C: CCDC144C pr 59.3 1.4E+02 0.003 30.3 11.3 62 193-254 182-243 (305)
298 PF15254 CCDC14: Coiled-coil d 59.0 51 0.0011 37.2 9.0 61 213-273 389-468 (861)
299 PF05791 Bacillus_HBL: Bacillu 58.8 1.3E+02 0.0029 27.3 10.5 77 196-275 102-178 (184)
300 KOG0980 Actin-binding protein 58.4 2.2E+02 0.0049 32.8 13.8 36 187-222 449-484 (980)
301 PRK04863 mukB cell division pr 58.3 2.9E+02 0.0063 33.4 15.5 52 202-253 374-425 (1486)
302 KOG3433 Protein involved in me 58.1 94 0.002 29.7 9.4 47 202-248 79-125 (203)
303 PF10046 BLOC1_2: Biogenesis o 57.9 1.1E+02 0.0023 25.3 9.1 20 247-266 74-93 (99)
304 PF10205 KLRAQ: Predicted coil 57.9 1.1E+02 0.0024 26.4 9.0 46 207-252 15-60 (102)
305 COG1340 Uncharacterized archae 57.8 1.7E+02 0.0036 29.5 11.6 94 178-277 6-100 (294)
306 COG3883 Uncharacterized protei 57.6 1.7E+02 0.0036 29.0 11.5 46 208-253 49-94 (265)
307 PRK01156 chromosome segregatio 57.6 3E+02 0.0065 30.4 15.4 15 265-279 435-449 (895)
308 TIGR01069 mutS2 MutS2 family p 57.2 1.9E+02 0.0041 32.3 13.1 7 176-182 490-496 (771)
309 KOG1318 Helix loop helix trans 57.0 33 0.00071 35.8 6.9 20 236-255 301-320 (411)
310 KOG0994 Extracellular matrix g 57.0 68 0.0015 38.0 9.7 58 205-263 1247-1304(1758)
311 smart00340 HALZ homeobox assoc 57.0 24 0.00051 26.2 4.2 23 226-248 6-28 (44)
312 COG0172 SerS Seryl-tRNA synthe 56.9 1.7E+02 0.0037 30.7 12.0 67 209-282 41-111 (429)
313 COG1382 GimC Prefoldin, chaper 56.8 53 0.0011 28.9 7.1 36 199-234 65-100 (119)
314 PF04340 DUF484: Protein of un 56.8 92 0.002 28.8 9.2 47 205-255 41-87 (225)
315 KOG0804 Cytoplasmic Zn-finger 56.8 1.2E+02 0.0026 32.4 10.8 12 266-277 434-445 (493)
316 PRK14160 heat shock protein Gr 56.6 1.2E+02 0.0026 29.0 10.0 41 208-248 58-98 (211)
317 PF06216 RTBV_P46: Rice tungro 56.5 62 0.0013 32.4 8.4 48 205-252 65-112 (389)
318 PF06008 Laminin_I: Laminin Do 56.5 1.7E+02 0.0037 27.7 11.2 50 204-253 52-101 (264)
319 PF07558 Shugoshin_N: Shugoshi 56.4 13 0.00028 27.2 2.9 42 185-227 3-44 (46)
320 PF14645 Chibby: Chibby family 56.1 39 0.00084 29.2 6.2 21 208-228 82-102 (116)
321 KOG0995 Centromere-associated 56.1 1.8E+02 0.004 31.8 12.3 29 223-251 292-320 (581)
322 KOG0709 CREB/ATF family transc 56.1 45 0.00097 35.4 7.7 27 227-253 274-300 (472)
323 PRK00409 recombination and DNA 55.9 1.5E+02 0.0032 33.1 12.0 7 42-48 318-324 (782)
324 PF13935 Ead_Ea22: Ead/Ea22-li 55.7 63 0.0014 28.3 7.5 13 200-212 77-89 (139)
325 PRK10803 tol-pal system protei 55.7 66 0.0014 30.9 8.3 46 207-252 43-88 (263)
326 PF04977 DivIC: Septum formati 55.4 51 0.0011 24.9 6.2 29 202-230 22-50 (80)
327 PF11365 DUF3166: Protein of u 55.3 61 0.0013 27.5 7.1 20 260-279 29-48 (96)
328 KOG0946 ER-Golgi vesicle-tethe 55.3 2E+02 0.0044 32.9 12.8 50 200-249 667-716 (970)
329 PF10779 XhlA: Haemolysin XhlA 54.9 72 0.0016 24.8 7.0 45 208-252 3-47 (71)
330 KOG2264 Exostosin EXT1L [Signa 54.7 77 0.0017 35.1 9.3 46 204-249 93-138 (907)
331 PF13863 DUF4200: Domain of un 54.5 1.2E+02 0.0027 25.1 9.4 16 237-252 86-101 (126)
332 PF13805 Pil1: Eisosome compon 54.4 99 0.0022 30.7 9.4 60 188-252 132-192 (271)
333 COG1792 MreC Cell shape-determ 54.4 41 0.00088 32.9 6.8 42 200-245 62-103 (284)
334 PF07407 Seadorna_VP6: Seadorn 54.1 22 0.00048 36.5 5.0 31 212-244 33-63 (420)
335 PF09325 Vps5: Vps5 C terminal 54.0 1.7E+02 0.0037 26.4 13.5 77 194-273 125-201 (236)
336 TIGR00634 recN DNA repair prot 53.9 37 0.00081 35.7 6.9 15 176-190 137-151 (563)
337 PRK02793 phi X174 lysis protei 53.7 1.1E+02 0.0024 24.2 8.2 27 207-233 4-30 (72)
338 COG4372 Uncharacterized protei 53.3 3.1E+02 0.0066 29.2 13.7 86 190-275 130-225 (499)
339 PF10267 Tmemb_cc2: Predicted 52.8 1.1E+02 0.0023 31.8 9.7 17 238-254 275-291 (395)
340 PF08232 Striatin: Striatin fa 52.7 1E+02 0.0022 27.0 8.4 46 208-253 15-60 (134)
341 KOG1853 LIS1-interacting prote 52.6 2.6E+02 0.0056 28.2 13.8 44 187-230 28-71 (333)
342 PF15619 Lebercilin: Ciliary p 52.5 2E+02 0.0043 26.8 10.7 20 206-225 84-103 (194)
343 PF04751 DUF615: Protein of un 52.4 1.4E+02 0.0031 27.0 9.4 25 189-213 48-72 (157)
344 KOG4673 Transcription factor T 51.7 3.8E+02 0.0083 30.5 14.0 90 181-273 503-618 (961)
345 PF15397 DUF4618: Domain of un 51.6 2.2E+02 0.0047 28.1 11.1 32 202-233 4-35 (258)
346 PF14915 CCDC144C: CCDC144C pr 51.6 2.8E+02 0.006 28.2 13.9 67 207-275 217-293 (305)
347 PF13166 AAA_13: AAA domain 51.5 3.3E+02 0.0071 29.0 14.4 48 207-254 406-453 (712)
348 PF12709 Kinetocho_Slk19: Cent 51.4 1.4E+02 0.003 25.1 8.5 52 202-253 25-77 (87)
349 PRK09841 cryptic autophosphory 51.1 3.7E+02 0.008 29.5 14.8 13 265-277 351-363 (726)
350 PF12329 TMF_DNA_bd: TATA elem 51.0 1.2E+02 0.0027 24.0 10.4 37 208-244 9-45 (74)
351 KOG0999 Microtubule-associated 50.9 1.2E+02 0.0026 33.4 10.0 62 210-278 7-75 (772)
352 KOG0243 Kinesin-like protein [ 50.8 3E+02 0.0065 32.2 13.5 68 189-256 416-493 (1041)
353 KOG3648 Golgi apparatus protei 50.6 7.8 0.00017 42.9 1.3 16 304-319 66-81 (1179)
354 PF15070 GOLGA2L5: Putative go 50.6 1.5E+02 0.0032 32.4 10.8 52 203-254 166-217 (617)
355 KOG0742 AAA+-type ATPase [Post 50.3 3.7E+02 0.008 29.2 15.2 17 144-160 62-78 (630)
356 PF05622 HOOK: HOOK protein; 50.3 5.3 0.00011 43.2 0.0 60 193-252 314-376 (713)
357 PRK14474 F0F1 ATP synthase sub 50.1 2.4E+02 0.0052 27.0 15.6 45 183-227 36-80 (250)
358 PF14282 FlxA: FlxA-like prote 50.1 1E+02 0.0022 25.9 7.7 18 207-224 22-39 (106)
359 PRK00846 hypothetical protein; 49.9 1.4E+02 0.0031 24.4 8.1 26 207-232 9-34 (77)
360 PF05911 DUF869: Plant protein 49.7 4.3E+02 0.0094 29.9 14.6 16 207-222 627-642 (769)
361 PF07246 Phlebovirus_NSM: Phle 49.7 2.1E+02 0.0045 28.5 10.7 10 266-275 229-238 (264)
362 PF08702 Fib_alpha: Fibrinogen 49.6 1.9E+02 0.0042 25.8 10.8 13 265-277 116-128 (146)
363 PF06632 XRCC4: DNA double-str 49.2 3E+02 0.0066 28.0 12.5 14 215-228 155-168 (342)
364 PF09730 BicD: Microtubule-ass 49.2 2.6E+02 0.0056 31.4 12.4 29 219-247 63-91 (717)
365 KOG4196 bZIP transcription fac 49.1 2E+02 0.0044 25.9 12.1 37 215-252 58-94 (135)
366 PF05600 DUF773: Protein of un 49.0 1.8E+02 0.0039 30.9 10.9 53 202-254 430-482 (507)
367 COG5185 HEC1 Protein involved 49.0 1E+02 0.0022 33.3 9.0 42 203-244 486-527 (622)
368 KOG2991 Splicing regulator [RN 48.9 95 0.0021 31.2 8.2 19 248-266 238-256 (330)
369 PRK12704 phosphodiesterase; Pr 48.9 3.6E+02 0.0078 28.7 15.0 25 223-247 91-115 (520)
370 PF10482 CtIP_N: Tumour-suppre 48.8 1.5E+02 0.0032 26.3 8.6 31 203-233 34-64 (120)
371 PF13874 Nup54: Nucleoporin co 48.5 1.5E+02 0.0032 25.9 8.7 23 207-229 54-76 (141)
372 PF00769 ERM: Ezrin/radixin/mo 48.5 2.5E+02 0.0055 26.9 11.0 93 184-276 13-112 (246)
373 KOG0963 Transcription factor/C 48.4 2.1E+02 0.0045 31.6 11.3 41 234-275 319-359 (629)
374 KOG1029 Endocytic adaptor prot 48.1 1.7E+02 0.0036 33.7 10.7 43 206-248 474-516 (1118)
375 PF13874 Nup54: Nucleoporin co 47.9 1.9E+02 0.0041 25.2 9.4 27 226-252 94-120 (141)
376 PF02388 FemAB: FemAB family; 47.6 1.3E+02 0.0028 30.6 9.3 27 203-229 241-267 (406)
377 PF12329 TMF_DNA_bd: TATA elem 47.5 1.4E+02 0.0031 23.7 10.7 52 202-253 10-61 (74)
378 PF06698 DUF1192: Protein of u 47.3 64 0.0014 25.2 5.5 24 206-229 23-46 (59)
379 PRK04325 hypothetical protein; 47.2 1.5E+02 0.0031 23.7 8.1 26 207-232 5-30 (74)
380 PRK14143 heat shock protein Gr 47.2 1.4E+02 0.003 28.9 9.0 24 205-228 82-105 (238)
381 KOG1883 Cofactor required for 47.1 9.7 0.00021 44.3 1.4 56 285-340 1410-1474(1517)
382 PRK10361 DNA recombination pro 47.1 3.9E+02 0.0084 28.6 14.4 8 267-274 147-154 (475)
383 PF09738 DUF2051: Double stran 47.0 1.1E+02 0.0023 30.7 8.5 36 206-241 121-156 (302)
384 KOG0612 Rho-associated, coiled 46.7 3.7E+02 0.0081 32.1 13.5 39 206-244 496-534 (1317)
385 PF07798 DUF1640: Protein of u 46.5 2.2E+02 0.0048 25.6 11.3 12 264-275 142-153 (177)
386 TIGR02209 ftsL_broad cell divi 46.5 81 0.0018 24.5 6.2 29 202-230 29-57 (85)
387 PF09744 Jnk-SapK_ap_N: JNK_SA 46.3 2.3E+02 0.005 25.8 11.4 37 209-245 94-130 (158)
388 KOG0249 LAR-interacting protei 46.3 4E+02 0.0086 30.4 13.1 36 237-273 221-257 (916)
389 PRK00295 hypothetical protein; 46.2 1.4E+02 0.0031 23.3 7.9 25 209-233 3-27 (68)
390 PF09789 DUF2353: Uncharacteri 46.1 2.3E+02 0.0049 28.8 10.6 48 222-276 69-116 (319)
391 PF01486 K-box: K-box region; 46.1 69 0.0015 26.2 5.9 32 196-227 63-98 (100)
392 PF11365 DUF3166: Protein of u 46.0 95 0.0021 26.4 6.8 43 206-248 3-45 (96)
393 PF04340 DUF484: Protein of un 46.0 1.1E+02 0.0023 28.4 7.9 38 226-263 41-78 (225)
394 KOG0999 Microtubule-associated 45.9 3.2E+02 0.0068 30.4 12.1 41 213-253 172-215 (772)
395 PRK14161 heat shock protein Gr 45.9 2.5E+02 0.0054 26.0 10.1 33 214-246 22-54 (178)
396 PF04642 DUF601: Protein of un 45.8 1.1E+02 0.0023 30.7 8.1 50 204-253 217-273 (311)
397 PF08826 DMPK_coil: DMPK coile 45.6 1.5E+02 0.0032 23.3 10.1 59 215-273 1-59 (61)
398 KOG1955 Ral-GTPase effector RA 45.5 4.6E+02 0.0099 28.9 14.6 26 90-115 554-579 (737)
399 PHA03011 hypothetical protein; 44.9 1.6E+02 0.0034 25.8 8.0 58 212-276 58-115 (120)
400 KOG0964 Structural maintenance 44.9 5.3E+02 0.012 30.5 14.1 43 206-248 420-462 (1200)
401 KOG0612 Rho-associated, coiled 44.9 3.6E+02 0.0077 32.3 13.0 36 216-251 492-527 (1317)
402 PF10174 Cast: RIM-binding pro 44.8 4.3E+02 0.0094 29.9 13.4 64 206-276 289-352 (775)
403 KOG4348 Adaptor protein CMS/SE 44.8 1.2E+02 0.0026 32.6 8.6 58 202-276 567-624 (627)
404 COG1842 PspA Phage shock prote 44.5 2.9E+02 0.0063 26.4 12.0 73 204-276 31-122 (225)
405 PF04949 Transcrip_act: Transc 44.5 2.6E+02 0.0057 25.9 14.7 92 183-274 44-147 (159)
406 PLN02678 seryl-tRNA synthetase 44.3 1.6E+02 0.0034 31.0 9.5 53 181-237 14-66 (448)
407 COG5185 HEC1 Protein involved 44.2 1.7E+02 0.0037 31.7 9.7 23 89-111 89-111 (622)
408 KOG4360 Uncharacterized coiled 44.2 3.2E+02 0.007 29.9 11.8 40 212-251 213-252 (596)
409 PRK12705 hypothetical protein; 44.1 4.4E+02 0.0095 28.3 14.3 7 210-216 94-100 (508)
410 TIGR02231 conserved hypothetic 44.1 3.9E+02 0.0086 27.8 12.8 29 223-251 136-164 (525)
411 KOG3564 GTPase-activating prot 43.8 2.4E+02 0.0051 30.8 10.7 70 194-266 36-108 (604)
412 PF15242 FAM53: Family of FAM5 43.6 12 0.00026 37.6 1.3 22 92-113 109-130 (314)
413 KOG4378 Nuclear protein COP1 [ 43.5 2.7E+02 0.0058 30.5 11.1 81 167-247 567-648 (673)
414 PF10168 Nup88: Nuclear pore c 43.4 4.7E+02 0.01 29.2 13.4 33 208-240 562-594 (717)
415 PF13805 Pil1: Eisosome compon 43.4 2.5E+02 0.0053 28.0 10.2 51 183-233 144-194 (271)
416 PF05300 DUF737: Protein of un 43.4 1.3E+02 0.0028 28.3 7.9 52 186-237 116-167 (187)
417 cd07429 Cby_like Chibby, a nuc 43.4 42 0.00091 29.1 4.4 22 209-230 77-98 (108)
418 PF09789 DUF2353: Uncharacteri 43.2 3.7E+02 0.0081 27.3 11.8 45 207-251 68-112 (319)
419 KOG4593 Mitotic checkpoint pro 43.2 2.2E+02 0.0047 32.0 10.6 74 202-279 249-325 (716)
420 PRK14148 heat shock protein Gr 43.0 2.2E+02 0.0048 26.8 9.4 9 283-291 145-153 (195)
421 PRK03992 proteasome-activating 42.9 80 0.0017 31.7 7.0 19 209-227 13-31 (389)
422 PF13815 Dzip-like_N: Iguana/D 42.8 1E+02 0.0022 26.1 6.6 42 207-248 76-117 (118)
423 PF09787 Golgin_A5: Golgin sub 42.5 3.8E+02 0.0083 28.2 12.1 45 187-231 197-241 (511)
424 PF08537 NBP1: Fungal Nap bind 42.4 3.9E+02 0.0085 27.3 12.7 23 183-205 122-144 (323)
425 PF12761 End3: Actin cytoskele 42.4 3.1E+02 0.0067 26.1 11.1 18 199-216 131-148 (195)
426 PRK10636 putative ABC transpor 42.4 2.6E+02 0.0056 30.1 11.0 24 205-228 564-587 (638)
427 PRK14011 prefoldin subunit alp 42.1 1.5E+02 0.0032 26.6 7.8 7 246-252 127-133 (144)
428 PF09763 Sec3_C: Exocyst compl 42.1 4.9E+02 0.011 28.3 14.0 40 205-244 38-77 (701)
429 PRK14872 rod shape-determining 41.9 1.5E+02 0.0033 30.2 8.7 7 283-289 113-119 (337)
430 KOG1003 Actin filament-coating 41.8 2.1E+02 0.0045 27.6 9.0 25 209-233 114-138 (205)
431 PRK01156 chromosome segregatio 41.5 5.3E+02 0.011 28.6 15.4 35 211-245 204-238 (895)
432 PF09727 CortBP2: Cortactin-bi 41.4 3.2E+02 0.0069 25.9 13.4 57 184-242 95-165 (192)
433 PF04728 LPP: Lipoprotein leuc 41.3 1.6E+02 0.0035 22.9 6.8 29 211-239 3-31 (56)
434 PF05761 5_nucleotid: 5' nucle 41.2 55 0.0012 34.2 5.7 71 200-279 318-388 (448)
435 PF11180 DUF2968: Protein of u 41.2 3.2E+02 0.007 26.0 13.0 69 209-277 117-185 (192)
436 COG2919 Septum formation initi 41.0 1.5E+02 0.0032 25.3 7.4 38 221-258 46-83 (117)
437 cd07429 Cby_like Chibby, a nuc 41.0 59 0.0013 28.2 4.9 17 234-250 81-97 (108)
438 PRK10963 hypothetical protein; 40.7 94 0.002 29.1 6.7 46 206-255 39-84 (223)
439 COG1340 Uncharacterized archae 40.5 4E+02 0.0087 26.9 14.2 88 183-276 26-123 (294)
440 PTZ00454 26S protease regulato 40.4 90 0.002 31.9 7.0 14 210-223 28-41 (398)
441 KOG0962 DNA repair protein RAD 40.2 7.4E+02 0.016 29.9 14.7 16 209-224 1013-1028(1294)
442 PF05557 MAD: Mitotic checkpoi 40.2 97 0.0021 33.7 7.6 18 260-277 566-583 (722)
443 KOG0982 Centrosomal protein Nu 40.1 5E+02 0.011 27.9 12.6 42 198-239 298-339 (502)
444 PF05812 Herpes_BLRF2: Herpesv 40.1 38 0.00083 29.8 3.7 26 227-252 5-30 (118)
445 PF07407 Seadorna_VP6: Seadorn 40.0 1.4E+02 0.0031 30.9 8.1 31 205-235 47-79 (420)
446 PRK00736 hypothetical protein; 39.9 1.8E+02 0.004 22.8 7.9 24 209-232 3-26 (68)
447 PF07926 TPR_MLP1_2: TPR/MLP1/ 39.8 2.4E+02 0.0053 24.2 12.6 14 263-276 101-114 (132)
448 TIGR01554 major_cap_HK97 phage 39.8 2.1E+02 0.0045 28.4 9.2 27 202-228 25-51 (378)
449 PF07200 Mod_r: Modifier of ru 39.8 2.5E+02 0.0053 24.2 13.2 22 169-191 4-25 (150)
450 PF09787 Golgin_A5: Golgin sub 39.7 3.7E+02 0.008 28.3 11.5 22 196-217 238-259 (511)
451 PF12795 MscS_porin: Mechanose 39.6 3.2E+02 0.007 25.5 13.0 21 213-233 152-172 (240)
452 PF15066 CAGE1: Cancer-associa 39.6 2E+02 0.0043 31.0 9.4 13 267-279 460-472 (527)
453 KOG4677 Golgi integral membran 39.6 5.3E+02 0.011 28.0 12.7 10 189-198 173-182 (554)
454 PRK15396 murein lipoprotein; P 39.5 2E+02 0.0044 23.5 7.6 23 207-229 28-50 (78)
455 KOG4657 Uncharacterized conser 39.5 3.9E+02 0.0084 26.4 12.7 21 208-228 59-79 (246)
456 KOG2991 Splicing regulator [RN 39.4 3.2E+02 0.007 27.6 10.3 41 207-247 213-258 (330)
457 KOG4438 Centromere-associated 39.4 5E+02 0.011 27.7 15.0 70 171-244 243-312 (446)
458 PF11544 Spc42p: Spindle pole 39.4 2.2E+02 0.0047 23.5 8.2 53 216-275 3-55 (76)
459 PF12777 MT: Microtubule-bindi 39.4 1.7E+02 0.0037 29.0 8.6 48 202-249 233-280 (344)
460 PHA03011 hypothetical protein; 39.2 2.5E+02 0.0055 24.6 8.4 26 206-231 66-91 (120)
461 PF02841 GBP_C: Guanylate-bind 39.2 3.7E+02 0.0079 26.0 14.3 14 262-275 279-292 (297)
462 KOG2189 Vacuolar H+-ATPase V0 39.2 2.7E+02 0.0058 31.8 10.6 53 196-248 48-115 (829)
463 TIGR03319 YmdA_YtgF conserved 39.1 5.1E+02 0.011 27.6 14.9 15 230-244 92-106 (514)
464 TIGR00634 recN DNA repair prot 39.1 4.9E+02 0.011 27.5 12.3 94 179-275 297-394 (563)
465 PF07058 Myosin_HC-like: Myosi 39.0 2E+02 0.0043 29.5 8.9 84 213-296 2-109 (351)
466 PF07227 DUF1423: Protein of u 38.9 2.6E+02 0.0056 29.7 10.1 43 195-237 341-383 (446)
467 PF14661 HAUS6_N: HAUS augmin- 38.8 3.5E+02 0.0075 25.7 11.4 44 197-240 161-207 (247)
468 TIGR03545 conserved hypothetic 38.8 3.5E+02 0.0077 29.2 11.3 82 195-277 182-272 (555)
469 PRK10929 putative mechanosensi 38.8 5.8E+02 0.013 30.1 13.6 98 170-272 198-329 (1109)
470 KOG0976 Rho/Rac1-interacting s 38.6 7E+02 0.015 29.2 14.6 20 183-202 105-124 (1265)
471 PF09728 Taxilin: Myosin-like 38.6 4.1E+02 0.0089 26.4 15.8 46 202-247 48-93 (309)
472 PF09311 Rab5-bind: Rabaptin-l 38.5 17 0.00037 33.0 1.4 34 211-244 29-69 (181)
473 COG3879 Uncharacterized protei 38.4 1.7E+02 0.0037 28.8 8.1 29 209-237 55-83 (247)
474 PF07334 IFP_35_N: Interferon- 38.4 47 0.001 27.2 3.7 19 235-253 3-21 (76)
475 KOG3335 Predicted coiled-coil 38.4 71 0.0015 30.1 5.3 41 183-229 91-131 (181)
476 KOG4673 Transcription factor T 38.4 3.9E+02 0.0085 30.4 11.6 25 225-249 409-433 (961)
477 cd00632 Prefoldin_beta Prefold 38.2 1.7E+02 0.0036 24.1 7.1 39 202-240 61-99 (105)
478 PRK11147 ABC transporter ATPas 38.1 1.2E+02 0.0027 32.3 7.8 64 190-254 555-624 (635)
479 KOG2483 Upstream transcription 38.1 74 0.0016 30.7 5.6 39 200-238 101-139 (232)
480 PRK11281 hypothetical protein; 38.0 3E+02 0.0065 32.4 11.2 108 171-278 148-259 (1113)
481 PHA03155 hypothetical protein; 37.9 41 0.0009 29.5 3.5 22 227-248 10-31 (115)
482 PF05701 WEMBL: Weak chloropla 37.9 4.3E+02 0.0093 28.0 11.6 74 203-276 280-353 (522)
483 PF03961 DUF342: Protein of un 37.9 2E+02 0.0042 29.6 9.0 73 203-276 333-405 (451)
484 PF15290 Syntaphilin: Golgi-lo 37.8 3.9E+02 0.0085 27.1 10.6 69 203-278 74-142 (305)
485 PF13870 DUF4201: Domain of un 37.8 2.9E+02 0.0064 24.5 11.1 76 204-279 56-131 (177)
486 PRK11091 aerobic respiration c 37.7 5.4E+02 0.012 27.6 14.0 90 193-282 78-167 (779)
487 PF04899 MbeD_MobD: MbeD/MobD 37.6 2.1E+02 0.0046 22.9 8.0 50 207-256 17-66 (70)
488 TIGR03319 YmdA_YtgF conserved 37.5 5.4E+02 0.012 27.5 14.6 106 164-272 33-141 (514)
489 PF10046 BLOC1_2: Biogenesis o 37.5 2.4E+02 0.0051 23.3 9.9 70 206-279 16-85 (99)
490 PF13747 DUF4164: Domain of un 37.4 2.3E+02 0.0051 23.3 10.0 73 204-279 8-83 (89)
491 PHA03162 hypothetical protein; 37.3 42 0.0009 30.2 3.5 22 227-248 15-36 (135)
492 PLN02939 transferase, transfer 37.2 4.7E+02 0.01 30.5 12.4 94 185-279 137-276 (977)
493 PRK05255 hypothetical protein; 37.0 3.5E+02 0.0075 25.1 10.8 103 169-276 39-143 (171)
494 TIGR02680 conserved hypothetic 37.0 8E+02 0.017 29.3 15.2 95 183-277 861-959 (1353)
495 PRK13923 putative spore coat p 37.0 3.5E+02 0.0076 25.2 9.8 66 191-256 42-142 (170)
496 KOG4370 Ral-GTPase effector RL 37.0 1.4E+02 0.0031 31.9 7.8 58 221-278 409-466 (514)
497 PRK13923 putative spore coat p 37.0 98 0.0021 28.8 6.0 37 203-239 110-146 (170)
498 PRK10361 DNA recombination pro 36.9 5.6E+02 0.012 27.5 14.3 87 184-276 36-122 (475)
499 KOG4436 Predicted GTPase activ 36.8 43 0.00093 38.0 4.3 76 204-279 829-909 (948)
500 PF05557 MAD: Mitotic checkpoi 36.7 62 0.0013 35.2 5.4 92 181-272 438-536 (722)
No 1
>smart00338 BRLZ basic region leucin zipper.
Probab=99.39 E-value=2.3e-12 Score=97.83 Aligned_cols=62 Identities=40% Similarity=0.513 Sum_probs=56.6
Q ss_pred cChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 019163 180 IDPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAEN 241 (345)
Q Consensus 180 ~DpKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN 241 (345)
.|+|+.+|+++||+||++||+||+.|+.+||.+|..|+.+|..|..++..|..++..|..++
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999999999999999999999999998777776666654
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.28 E-value=2.4e-11 Score=92.07 Aligned_cols=61 Identities=38% Similarity=0.591 Sum_probs=56.8
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019163 182 PKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENK 242 (345)
Q Consensus 182 pKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~ 242 (345)
.|+.+|+++||+||+++|.||+.|+++||.+|..|+.+|..|..++..|...+..|..+|.
T Consensus 4 ~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 4 DKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4789999999999999999999999999999999999999999999999999888888873
No 3
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.06 E-value=8.4e-10 Score=81.62 Aligned_cols=52 Identities=38% Similarity=0.562 Sum_probs=48.0
Q ss_pred cChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 180 IDPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQR 232 (345)
Q Consensus 180 ~DpKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr 232 (345)
.|+++.||. +||+||++||.||+.|+.+||.+|..|+.+|..|..+|..|+.
T Consensus 2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 2 DEEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 367888888 9999999999999999999999999999999999999988765
No 4
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.06 E-value=1.6e-09 Score=102.91 Aligned_cols=74 Identities=28% Similarity=0.386 Sum_probs=69.6
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019163 181 DPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQ 254 (345)
Q Consensus 181 DpKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq 254 (345)
++|-.||+|+||.+|+-+|.|||.+++++|..|..|..||..|..++..|++.+..|.++|.+|..+|..+.+.
T Consensus 67 EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~ 140 (292)
T KOG4005|consen 67 EEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQE 140 (292)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999998888766543
No 5
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.05 E-value=2.7e-10 Score=117.24 Aligned_cols=64 Identities=36% Similarity=0.562 Sum_probs=61.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019163 183 KRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKL 246 (345)
Q Consensus 183 KR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~ 246 (345)
||..|||+||+||..||+|||+|+..||.+++.|..||..|+.+...|.++...|..||.+||.
T Consensus 281 krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kv 344 (655)
T KOG4343|consen 281 KRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKV 344 (655)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccccc
Confidence 7788999999999999999999999999999999999999999999999999999999999863
No 6
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=98.95 E-value=1.1e-09 Score=106.30 Aligned_cols=53 Identities=26% Similarity=0.431 Sum_probs=49.0
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019163 182 PKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDT 234 (345)
Q Consensus 182 pKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~ 234 (345)
-||.-|+++|||+||.+|+|||+||.+||.+|.+|++.|..|.++|..|+.-|
T Consensus 290 rKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLY 342 (348)
T KOG3584|consen 290 RKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELY 342 (348)
T ss_pred hHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHh
Confidence 48888999999999999999999999999999999999999999998876543
No 7
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=98.77 E-value=1.3e-08 Score=103.48 Aligned_cols=75 Identities=32% Similarity=0.443 Sum_probs=61.5
Q ss_pred HHHHhhccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 173 RLAELALIDPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 173 ~laEla~~DpKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
|-.|-++ ||+||+|+|.+||+.||.|||+||+.||.+|....+||.+|..++..|+..+..|..+-+. +|++.
T Consensus 244 KaEEriL---KrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~k----lQt~v 316 (472)
T KOG0709|consen 244 KAEERIL---KRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKK----LQTLV 316 (472)
T ss_pred HHHHHHH---HHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHH----HHHHH
Confidence 3455444 9999999999999999999999999999999999999999999999877766666665443 34444
Q ss_pred HH
Q 019163 253 QQ 254 (345)
Q Consensus 253 qq 254 (345)
.+
T Consensus 317 ~q 318 (472)
T KOG0709|consen 317 IQ 318 (472)
T ss_pred hh
Confidence 44
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.10 E-value=7.4e-08 Score=78.27 Aligned_cols=69 Identities=28% Similarity=0.468 Sum_probs=53.5
Q ss_pred CChhHHHHhhccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019163 169 VDRDRLAELALIDPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENK 242 (345)
Q Consensus 169 m~~e~laEla~~DpKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~ 242 (345)
++.+.+.+| |.+||.++||.+|+++|.||+.++.+||.++..|..+...|..++..+..+...+...+.
T Consensus 21 lt~~q~~~l-----K~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~~~ 89 (92)
T PF03131_consen 21 LTEEQIAEL-----KQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKRKLE 89 (92)
T ss_dssp S-HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCHH
T ss_pred CCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445554 999999999999999999999999999999998888887777777766665554444333
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=97.81 E-value=6.5e-05 Score=72.52 Aligned_cols=45 Identities=33% Similarity=0.507 Sum_probs=40.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 188 ILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQR 232 (345)
Q Consensus 188 iLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr 232 (345)
.++||++|.+||.||.++|..||.+|..|..+|..|...+..|.+
T Consensus 211 rlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~ 255 (279)
T KOG0837|consen 211 RLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKE 255 (279)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH
Confidence 589999999999999999999999999999999988877765443
No 10
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.17 E-value=0.0078 Score=53.22 Aligned_cols=50 Identities=26% Similarity=0.397 Sum_probs=39.7
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 182 PKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQ 231 (345)
Q Consensus 182 pKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lq 231 (345)
-|-.||-|+||-.|+-.|-|+...-.+||.+-..|+.+...|..++..+.
T Consensus 52 lKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~ 101 (135)
T KOG4196|consen 52 LKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLR 101 (135)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48889999999999999999999988888877776666666555544433
No 11
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.09 E-value=0.0019 Score=63.28 Aligned_cols=54 Identities=22% Similarity=0.326 Sum_probs=41.0
Q ss_pred cChHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 180 IDPKRAKRIL-ANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRD 233 (345)
Q Consensus 180 ~DpKR~KRiL-sNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~ 233 (345)
.++|+.+|+- .|..+|.|.|+||+.-.++|+.++..|+.+|.+|+.++..|+++
T Consensus 223 ~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerE 277 (294)
T KOG4571|consen 223 TPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELERE 277 (294)
T ss_pred CchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555543 44456999999999999999999999888888888887765443
No 12
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=96.90 E-value=0.17 Score=48.20 Aligned_cols=81 Identities=15% Similarity=0.194 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h
Q 019163 198 SKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIA-T 276 (345)
Q Consensus 198 SReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a-~ 276 (345)
+=+..-.+|.|++.+...|..|-....++|.....+...|++.-+.++......+............|+.||..++.. +
T Consensus 26 ~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~l 105 (230)
T PF10146_consen 26 SLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYL 105 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334455899999999999999999999999999999999988888877776666665555545666788999999988 6
Q ss_pred cC
Q 019163 277 GQ 278 (345)
Q Consensus 277 ge 278 (345)
|.
T Consensus 106 gl 107 (230)
T PF10146_consen 106 GL 107 (230)
T ss_pred CC
Confidence 63
No 13
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=96.50 E-value=0.0068 Score=64.42 Aligned_cols=64 Identities=25% Similarity=0.305 Sum_probs=52.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019163 183 KRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 183 KR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEq 253 (345)
+=+||.=+||.+|++.|.||..-|..||..|..|+.|..+|..+- ..+..+-.++|++|..|-+
T Consensus 490 rDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er-------~~~d~~L~~~kqqls~L~~ 553 (604)
T KOG3863|consen 490 RDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRER-------DELDSTLGVMKQQLSELYQ 553 (604)
T ss_pred hccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 556777789999999999999999999999999999888776543 4466677778778877775
No 14
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=96.39 E-value=0.16 Score=44.18 Aligned_cols=76 Identities=21% Similarity=0.295 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 200 ERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIA 275 (345)
Q Consensus 200 eRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a 275 (345)
.|=+.+-+.|+.++..|..++..|...+..|+.+...+..+...++.+...++.+..-....+..+++|+++|+..
T Consensus 48 ~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~ 123 (151)
T PF11559_consen 48 DRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQ 123 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444444444444444444433333333344444555555543
No 15
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=96.37 E-value=0.017 Score=55.51 Aligned_cols=47 Identities=23% Similarity=0.441 Sum_probs=39.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 187 RILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRD 233 (345)
Q Consensus 187 RiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~ 233 (345)
|.-+|=++|+|||.+.++...+...+|..|+.||..|+.+|..|+++
T Consensus 198 rr~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~e 244 (269)
T KOG3119|consen 198 RRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKE 244 (269)
T ss_pred HHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33468899999999999999999999999999999988887765443
No 16
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=95.53 E-value=0.072 Score=45.29 Aligned_cols=50 Identities=30% Similarity=0.414 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019163 204 RYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEq 253 (345)
..|.+||..+..|..+...|+.++..|..+++.|..||..|+.+|..+++
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35778899999999999999999999888889999999988888877765
No 17
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.51 E-value=0.39 Score=38.31 Aligned_cols=50 Identities=26% Similarity=0.318 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019163 204 RYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEq 253 (345)
+-++.||.||+.+-..+..|..++..|+.++..|..+|..|+...+.+.+
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45788999999888888888888888888888888888888777666664
No 18
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=95.29 E-value=0.094 Score=44.99 Aligned_cols=49 Identities=31% Similarity=0.428 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEq 253 (345)
.+..||..+..|..+...|+.++..|..+++.|..||..|+.+|..++.
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4678899999999999999999999999999999999999888876643
No 19
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=95.14 E-value=0.4 Score=37.91 Aligned_cols=63 Identities=24% Similarity=0.370 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 019163 208 ELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQ-AHLRDALNEALREEVQR 271 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq-~~LrdalNE~L~eEV~r 271 (345)
.||..+..|+..+..+..++...+..+..|..|+...-.+|...-.. ..|+ +.+++|++|+..
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk-~E~e~L~~el~~ 65 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLK-EENEALRKELEE 65 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 47777778888777777777777777777777776665555433322 3333 445555555443
No 20
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.06 E-value=0.2 Score=46.90 Aligned_cols=70 Identities=24% Similarity=0.341 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATGQ 278 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~ge 278 (345)
-|++|+.--+.|..||..|...+..+...+..|..|+-.|+..+..+.+-.+.. .+|.+|+..||..+..
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~a----K~l~eEledLk~~~~~ 78 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKA----KALEEELEDLKTLAKS 78 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 467888888888888888888888888888888888888888887776544333 3455666667655543
No 21
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.00 E-value=0.35 Score=45.27 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=17.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 226 QVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALR 266 (345)
Q Consensus 226 ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~ 266 (345)
+++........|..||.+|+.+++.+..+....++.++.++
T Consensus 126 ~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 126 KVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444333334444444
No 22
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.89 E-value=0.68 Score=42.12 Aligned_cols=66 Identities=24% Similarity=0.243 Sum_probs=40.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019163 183 KRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 183 KR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 248 (345)
++++.+.+.+..-..-.......|.+++.-++.|+.|...|..++..++.....|..||.+|-.|+
T Consensus 116 ~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 116 RRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444455555556666666666666666666666666666666666666665554
No 23
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=94.61 E-value=0.41 Score=37.85 Aligned_cols=61 Identities=28% Similarity=0.299 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 215 TLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIA 275 (345)
Q Consensus 215 ~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a 275 (345)
.|+.++.+|..++..+.+++.....+|+.|...=.....+....-..+..|++|++.|+..
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777777777777776666666666665556666677777777654
No 24
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=94.42 E-value=0.62 Score=38.22 Aligned_cols=43 Identities=23% Similarity=0.261 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019163 204 RYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKL 246 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~ 246 (345)
+-++.||.||+..-..+.-|..+|..|...+..|..|+..++.
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~ 46 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH 46 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888888877766666666666666666666665555433
No 25
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.21 E-value=0.91 Score=36.88 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVT 228 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~ 228 (345)
-++.||.||+..-.-.+-|.-+|.
T Consensus 5 v~ekLE~KiqqAvdTI~LLQmEie 28 (79)
T COG3074 5 VFEKLEAKVQQAIDTITLLQMEIE 28 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666554433333333333
No 26
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=93.71 E-value=0.5 Score=37.34 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 248 (345)
|+.|-..++.|+.||..|..++..++.+...|...|..-+.||
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rv 51 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKV 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555444444444444444333333
No 27
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=93.67 E-value=1.7 Score=35.81 Aligned_cols=70 Identities=20% Similarity=0.313 Sum_probs=62.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 183 KRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 183 KR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
+|+.+.|.+=+++-..|.-+..-..+||.+|+.|......|..++.....++..|+.-|.++..+|...-
T Consensus 11 ~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~ 80 (89)
T PF13747_consen 11 TRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAI 80 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777788888888888887777789999999999999999999999999999999999999988886554
No 28
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=93.34 E-value=3.6 Score=38.17 Aligned_cols=65 Identities=18% Similarity=0.256 Sum_probs=46.5
Q ss_pred cChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019163 180 IDPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKEL 244 (345)
Q Consensus 180 ~DpKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eL 244 (345)
.|=+-.+..|....+-+..+.+.+.+...||.++..-..++..+...+..|++....|..+...+
T Consensus 86 FnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~ 150 (190)
T PF05266_consen 86 FNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKL 150 (190)
T ss_pred CccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777888889999999999999999999998776666666666555555555444443333
No 29
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=93.17 E-value=1.7 Score=34.74 Aligned_cols=46 Identities=24% Similarity=0.307 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
..+-..+..|+.|+..|..+...|..+...|..||..|+..-....
T Consensus 14 ~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~ 59 (72)
T PF06005_consen 14 QQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQ 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555556666666666654444443
No 30
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=93.09 E-value=2.7 Score=45.35 Aligned_cols=90 Identities=29% Similarity=0.385 Sum_probs=59.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHhHHHH
Q 019163 183 KRAKRILANRQSAARSKERKIRYTSELERKVQTLQT------------------------EATTLSAQVTMLQRDTTGLT 238 (345)
Q Consensus 183 KR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~------------------------EN~~Ls~ql~~Lqr~~~~L~ 238 (345)
.+..-.+.|.+.--+-...+...|.+||.++..++. .|..|+.+|..|+..+..|.
T Consensus 101 ~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~lt 180 (617)
T PF15070_consen 101 EQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLT 180 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 334444555565544445777788888877777664 46788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 019163 239 AENKELKLRLQAMEQQA-HLRDALNEALREEVQRLK 273 (345)
Q Consensus 239 sEN~eLK~RLQaLEqq~-~LrdalNE~L~eEV~rLk 273 (345)
++|.+|+..|++-..-. .|...+++ |.+++..++
T Consensus 181 ne~~elt~~lq~Eq~~~keL~~kl~~-l~~~l~~~~ 215 (617)
T PF15070_consen 181 NENMELTSALQSEQHVKKELQKKLGE-LQEKLHNLK 215 (617)
T ss_pred HhhhHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 99999888887655543 34433442 333343333
No 31
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.70 E-value=7.6 Score=37.56 Aligned_cols=48 Identities=23% Similarity=0.347 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEq 253 (345)
+..|..++..++....+|..++..+......|..+-..|+.++..++.
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~ 138 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEK 138 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666666666666666666666666666555555553
No 32
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=92.28 E-value=0.71 Score=36.04 Aligned_cols=49 Identities=29% Similarity=0.295 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 204 RYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
.+|.+||.++..++.-..+|...|..-+++...|..+.+.|..+|..++
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5688999999999998888888888877777777766666655555544
No 33
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=92.06 E-value=3.2 Score=43.37 Aligned_cols=92 Identities=23% Similarity=0.301 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 019163 200 ERKIRYTSELERKVQT--------------LQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLR------- 258 (345)
Q Consensus 200 eRKkqyIeELE~KVq~--------------Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~Lr------- 258 (345)
.=|..|-+|+|+++.. ...+...+..++..|..+|..---||..|...+.+-++..+-.
T Consensus 389 AMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQEL 468 (593)
T KOG4807|consen 389 AMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQEL 468 (593)
T ss_pred HHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4567777777776543 2345556666777777777777777777755554433332211
Q ss_pred ----HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 019163 259 ----DALNEALREEVQRLKIATGQIPAANGNPFGRGL 291 (345)
Q Consensus 259 ----dalNE~L~eEV~rLk~a~geip~~~~~P~~~~~ 291 (345)
..||..|-+||.+||..+..-..++++|+..+-
T Consensus 469 naHNQELnnRLaaEItrLRtlltgdGgGtGsplaqgk 505 (593)
T KOG4807|consen 469 NAHNQELNNRLAAEITRLRTLLTGDGGGTGSPLAQGK 505 (593)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccCCCCCCCccccCc
Confidence 135556779999999775443445677766553
No 34
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=91.95 E-value=3.6 Score=35.80 Aligned_cols=36 Identities=36% Similarity=0.474 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019163 209 LERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKEL 244 (345)
Q Consensus 209 LE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eL 244 (345)
||.++..|+.++..|..+-..+..+...|+.+|.++
T Consensus 28 ~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 28 LEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444333
No 35
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=91.94 E-value=2.2 Score=33.72 Aligned_cols=44 Identities=16% Similarity=0.180 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQ 249 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQ 249 (345)
+..||.||..|-.....|..+...|..+...+..|+..|+.+.+
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne 45 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNE 45 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777777777777777654443
No 36
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=91.74 E-value=0.66 Score=40.25 Aligned_cols=46 Identities=28% Similarity=0.369 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQA 250 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQa 250 (345)
-+.+||..+.+|-.+...|+..+..+-.++..|..||..|+.||..
T Consensus 9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 4678888888888888888888888888888888888888888765
No 37
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=91.62 E-value=1.3 Score=36.23 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
++|..++..||.....|..++...+.++..|..||..|..-|..|-
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm 64 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLM 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778889999999999999999999999999999999877776664
No 38
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=91.55 E-value=9.8 Score=34.03 Aligned_cols=72 Identities=15% Similarity=0.228 Sum_probs=55.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019163 183 KRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQ 254 (345)
Q Consensus 183 KR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq 254 (345)
+-+--...|++.+-.--+-+++.|..|+.++..+..+...|...+..+..+...|..+-...+.++..||.-
T Consensus 31 reLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 31 RELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESL 102 (140)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334446678888888888888899999999998888888888888887777777777777777777766643
No 39
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.55 E-value=2.7 Score=38.25 Aligned_cols=64 Identities=22% Similarity=0.282 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 203 IRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALR 266 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~ 266 (345)
...|.+|+..+..|+.++..|...|....+.+..|..|...|.+.+..+|....--+..|..|-
T Consensus 115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv 178 (194)
T PF08614_consen 115 ERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELV 178 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666666666666666666655555555555555555555555554444445555553
No 40
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=91.45 E-value=1.7 Score=46.97 Aligned_cols=68 Identities=22% Similarity=0.398 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKL-----------------RLQAMEQQAHLRDALNEALREE 268 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~-----------------RLQaLEqq~~LrdalNE~L~eE 268 (345)
+..|+.+|+.|+.||..|...+..+++....|.++-..++. ++..|+....=+...-+.|+.+
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~ 503 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERK 503 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555444444444444444433332 3344444333333444556666
Q ss_pred HHHHH
Q 019163 269 VQRLK 273 (345)
Q Consensus 269 V~rLk 273 (345)
+.+|+
T Consensus 504 l~~l~ 508 (652)
T COG2433 504 LAELR 508 (652)
T ss_pred HHHHH
Confidence 66665
No 41
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=91.45 E-value=3.2 Score=33.29 Aligned_cols=49 Identities=24% Similarity=0.413 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTT--------GLTAENKELKLRLQAMEQQ 254 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~--------~L~sEN~eLK~RLQaLEqq 254 (345)
+.+.|..+..|..||=.|.-+|-.|+.... .+..+|-+||..+..|..+
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~e 58 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRE 58 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999998888765 3577777777777666644
No 42
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.36 E-value=12 Score=34.81 Aligned_cols=40 Identities=15% Similarity=0.242 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019163 204 RYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKE 243 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~e 243 (345)
..+++++.++..|+.+...+..++...++....+..++..
T Consensus 63 ~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 63 REIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444443333333
No 43
>PRK00295 hypothetical protein; Provisional
Probab=91.31 E-value=1.6 Score=34.29 Aligned_cols=36 Identities=19% Similarity=0.160 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAE 240 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sE 240 (345)
.|.+||.++..++.-...|...|..-+++...|..+
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~q 41 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQ 41 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999988888888877766655444443
No 44
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=91.29 E-value=4.3 Score=38.22 Aligned_cols=42 Identities=29% Similarity=0.370 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 248 (345)
.-|..+|..|+.||.+|......++.++..|.+++..|+.++
T Consensus 98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 468899999999999999999999999999999999998887
No 45
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=91.14 E-value=1.1 Score=46.97 Aligned_cols=44 Identities=18% Similarity=0.248 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 248 (345)
..++||.++..|+.|...|.++...++++...|+.||..|+.++
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 45789999999998888888888888888888888888876665
No 46
>PRK02793 phi X174 lysis protein; Provisional
Probab=90.98 E-value=1.5 Score=34.80 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 019163 204 RYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLT 238 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~ 238 (345)
.+|.+||.++..++.-...|...|..-+++...|.
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~ 42 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLR 42 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888877777777766555444333
No 47
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=90.98 E-value=2.4 Score=38.90 Aligned_cols=52 Identities=29% Similarity=0.380 Sum_probs=42.1
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019163 204 RYTSELER---KVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQA 255 (345)
Q Consensus 204 qyIeELE~---KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~ 255 (345)
.|+..|.. ....|+.||..|..++..|+.++..|..||..|+.++..++...
T Consensus 87 ~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY 141 (161)
T TIGR02894 87 SFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDY 141 (161)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444544 36778889999999999999999999999999999998888643
No 48
>PRK02119 hypothetical protein; Provisional
Probab=90.93 E-value=1.5 Score=34.93 Aligned_cols=36 Identities=17% Similarity=0.083 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 019163 204 RYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTA 239 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~s 239 (345)
.+|.+||.++..++.-..+|...|..-+++...|..
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ 44 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQV 44 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777666655554444433
No 49
>PRK00736 hypothetical protein; Provisional
Probab=90.90 E-value=1.6 Score=34.23 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 019163 204 RYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTA 239 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~s 239 (345)
.+|.+||.++..++.-...|...|..-+++...|..
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ 40 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRK 40 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999988888888877765555444443
No 50
>PRK04325 hypothetical protein; Provisional
Probab=90.89 E-value=1.5 Score=34.91 Aligned_cols=34 Identities=24% Similarity=0.146 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQRDTTGLT 238 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~ 238 (345)
+|.+||.++..++.-...|...|..-+++...|.
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~ 43 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVARQQQTLDLLQ 43 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999888888888877776555544443
No 51
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=90.74 E-value=2.7 Score=35.34 Aligned_cols=54 Identities=35% Similarity=0.406 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTL--SAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLR 258 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~L--s~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~Lr 258 (345)
.+.+++.++..++.+...| ...+..|+-....+..+-++|..+++.+..+..|-
T Consensus 43 ~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 43 RLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666666 66777777777777777777878888887666555
No 52
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=90.61 E-value=9.6 Score=37.64 Aligned_cols=80 Identities=20% Similarity=0.288 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 196 ARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIA 275 (345)
Q Consensus 196 rRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a 275 (345)
..-..+..+-+++||.+...|..|...|..+...+.++-...-.+.+.++.++..++.+...-.+..+.+..++.+|+..
T Consensus 56 e~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 56 EQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33445555666777777777777777777777777666666666677766666655555444445555666778888754
No 53
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=90.61 E-value=8.1 Score=31.61 Aligned_cols=46 Identities=35% Similarity=0.562 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHH
Q 019163 208 ELERKVQTLQTEATTLSAQVTMLQR---DTTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~ql~~Lqr---~~~~L~sEN~eLK~RLQaLEq 253 (345)
.|..++..|+.+-+.++.++..+.. ....|..+-++||.++..+|.
T Consensus 40 ~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~ 88 (108)
T PF02403_consen 40 ELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEE 88 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666665 366777788888888877775
No 54
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=90.45 E-value=5.2 Score=33.26 Aligned_cols=58 Identities=22% Similarity=0.363 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 216 LQTEATTLSAQVTMLQR------DTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIA 275 (345)
Q Consensus 216 Lq~EN~~Ls~ql~~Lqr------~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a 275 (345)
+..+|..|..+|..|+. +.+....||..|+..+..+..-. .....|+|-+||..|+..
T Consensus 22 ~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~~ 85 (86)
T PF12711_consen 22 LEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRDQ 85 (86)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHhh
Confidence 44455555555555553 34567888888887776666544 224567777888888753
No 55
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.35 E-value=6.4 Score=36.96 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019163 204 RYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKEL 244 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eL 244 (345)
+-+.+++..+..|+.+|.+|..++..++.+...|..+|..+
T Consensus 125 ~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 125 QKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555444444444444443
No 56
>PRK04406 hypothetical protein; Provisional
Probab=90.34 E-value=1.7 Score=34.79 Aligned_cols=31 Identities=16% Similarity=0.110 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQRDTT 235 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~ 235 (345)
+|.+||.++..++.-...|...|..-+++..
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~ 42 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLIT 42 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777766666666655444433
No 57
>PRK11637 AmiB activator; Provisional
Probab=90.05 E-value=10 Score=38.24 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 203 IRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
+..+.+++.++..|+.+...+..++..++.+...+..+-..|..+|..++
T Consensus 67 ~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 67 QQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444
No 58
>PRK11637 AmiB activator; Provisional
Probab=89.99 E-value=12 Score=37.94 Aligned_cols=31 Identities=10% Similarity=0.138 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 192 RQSAARSKERKIRYTSELERKVQTLQTEATT 222 (345)
Q Consensus 192 RESArRSReRKkqyIeELE~KVq~Lq~EN~~ 222 (345)
+......+..+...+.+++.+...|+.+..+
T Consensus 186 k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e 216 (428)
T PRK11637 186 KAELEEKQSQQKTLLYEQQAQQQKLEQARNE 216 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444443333
No 59
>PRK09039 hypothetical protein; Validated
Probab=89.87 E-value=3 Score=41.61 Aligned_cols=55 Identities=22% Similarity=0.362 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 019163 213 VQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALRE---EVQRLK 273 (345)
Q Consensus 213 Vq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~e---EV~rLk 273 (345)
|..|+.+...|+.++..|+......+.+..+.+.+++.+ ...|+.+|.+ |+.++|
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L------~~~L~~a~~~~~~~l~~~~ 196 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADL------GRRLNVALAQRVQELNRYR 196 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhH
Confidence 333444444444444444444444444444444444433 3355555533 444444
No 60
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=89.85 E-value=14 Score=33.03 Aligned_cols=51 Identities=24% Similarity=0.376 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 216 LQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALR 266 (345)
Q Consensus 216 Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~ 266 (345)
|+.+...|...+..|..+...+..|+..|...++.+..++.--+..+..+.
T Consensus 57 L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~ 107 (140)
T PF10473_consen 57 LEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLE 107 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 444444444444445555555555555555555555555444444444433
No 61
>PRK09039 hypothetical protein; Validated
Probab=89.67 E-value=14 Score=36.89 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 209 LERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRL 272 (345)
Q Consensus 209 LE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rL 272 (345)
|+.++..++.+.++...++..|+++...|..+...|...|...|.+..-....-+.|+++++..
T Consensus 121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555555555555555555555555555555444444444555555544
No 62
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=89.53 E-value=5.5 Score=39.63 Aligned_cols=74 Identities=18% Similarity=0.223 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 200 ERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLK 273 (345)
Q Consensus 200 eRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk 273 (345)
.|.++-+++-..++..|+.||..|...+..|++....|.-+-..=..++..||.+..-.-...+.|..||.++|
T Consensus 49 qKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~K 122 (307)
T PF10481_consen 49 QKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCK 122 (307)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556777888899999999999999988888888777766666777777776555555666666666555
No 63
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=89.48 E-value=5.5 Score=44.21 Aligned_cols=50 Identities=24% Similarity=0.302 Sum_probs=27.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHhc
Q 019163 228 TMLQRDTTGLTAENKELKLRLQAMEQQAHLRDAL---------------------NEALREEVQRLKIATG 277 (345)
Q Consensus 228 ~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~Lrdal---------------------NE~L~eEV~rLk~a~g 277 (345)
..|......++.||.-||-.+..+..+..+|-.. ...|.+|.+|||..+-
T Consensus 137 ~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~r 207 (769)
T PF05911_consen 137 EDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVR 207 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555555555554444333211 1147799999997654
No 64
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=89.05 E-value=14 Score=31.99 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=31.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019163 184 RAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKEL 244 (345)
Q Consensus 184 R~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eL 244 (345)
.+.|=+..|+.......++..-++.|+..+..|+.++..+..++..++.....+..+++.+
T Consensus 46 ~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~ 106 (151)
T PF11559_consen 46 QRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSL 106 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555555555555555444444444444333
No 65
>PRK00846 hypothetical protein; Provisional
Probab=88.83 E-value=2.8 Score=34.08 Aligned_cols=32 Identities=19% Similarity=0.139 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 019163 204 RYTSELERKVQTLQTEATTLSAQVTMLQRDTT 235 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~ 235 (345)
.+|.+||.++...+.-...|...|+..++...
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~ 44 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGA 44 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777666666666655444433
No 66
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=88.64 E-value=7.2 Score=42.57 Aligned_cols=71 Identities=23% Similarity=0.349 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRD---ALNEALREEVQRLKIAT 276 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~Lrd---alNE~L~eEV~rLk~a~ 276 (345)
+..|..++..|+.+...|..++..+.+.+.....++..+..+|..++....-+. .++..|..+|..||..+
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnI 316 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNI 316 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 788888888888888889999999999888888888888888877777666555 66777888888887543
No 67
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=88.52 E-value=10 Score=39.61 Aligned_cols=74 Identities=20% Similarity=0.117 Sum_probs=40.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHH
Q 019163 183 KRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDT-----TGLTAENKELKLRLQAMEQQAH 256 (345)
Q Consensus 183 KR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~-----~~L~sEN~eLK~RLQaLEqq~~ 256 (345)
|+.-|+.+.+..-+-.-+-=+.++.++|..++.|+.||..|..++....-.. ..+..||.++......+|...+
T Consensus 27 k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~~~q 105 (459)
T KOG0288|consen 27 KAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRELREQ 105 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555544433322222222345567899999999999999888765433221 2234455554444344443333
No 68
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.45 E-value=3.4 Score=33.62 Aligned_cols=46 Identities=24% Similarity=0.324 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQA 250 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQa 250 (345)
-|.-|.-+|..|..+|++|..++..++.....|..||..||..-..
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~ 64 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNG 64 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777777777777777777777654433
No 69
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=88.42 E-value=8.1 Score=40.60 Aligned_cols=50 Identities=24% Similarity=0.261 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQ 254 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq 254 (345)
.++.|+.+++.|+.||+.|+..++.|...+..|..+-..+..+|.++..+
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlq 347 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQ 347 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 35677889999999999999999999999888888876666666555443
No 70
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=88.29 E-value=5.7 Score=38.77 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQRDTTG 236 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~ 236 (345)
..+++..|.+.++.|+..|..+++.++.++..
T Consensus 136 ~~ee~kekl~E~~~EkeeL~~eleele~e~ee 167 (290)
T COG4026 136 DYEELKEKLEELQKEKEELLKELEELEAEYEE 167 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554444333
No 71
>PRK04863 mukB cell division protein MukB; Provisional
Probab=88.29 E-value=16 Score=43.41 Aligned_cols=93 Identities=17% Similarity=0.144 Sum_probs=46.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019163 183 KRAKRILANRQSAARSKERKIRY-------------TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQ 249 (345)
Q Consensus 183 KR~KRiLsNRESArRSReRKkqy-------------IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQ 249 (345)
++++.+-+.++.|.+.+.-+.++ +++|+.++...+.+...+..++..++.+...+..+-..|+.++.
T Consensus 321 ~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLa 400 (1486)
T PRK04863 321 EAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLA 400 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666777777766554442 22333444444444444444444445555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 250 AMEQQAHLRDALNEALREEVQRLKIA 275 (345)
Q Consensus 250 aLEqq~~LrdalNE~L~eEV~rLk~a 275 (345)
.+++...........+...+..|..+
T Consensus 401 elqqel~elQ~el~q~qq~i~~Le~~ 426 (1486)
T PRK04863 401 DYQQALDVQQTRAIQYQQAVQALERA 426 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444333333334444555555444
No 72
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=88.17 E-value=13 Score=30.58 Aligned_cols=78 Identities=19% Similarity=0.239 Sum_probs=61.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 019163 186 KRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQ-AMEQQAHLRDALNE 263 (345)
Q Consensus 186 KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQ-aLEqq~~LrdalNE 263 (345)
.+|-..+......=..|+.-+..||.++..|..|.+.-..+.-.+.+....|..|++.|+..+. .-+...+|.+..++
T Consensus 6 ~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E~~ 84 (96)
T PF08647_consen 6 VSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKETEKE 84 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4555666777777788888889999999999999999999999999999999999999977663 33444555554333
No 73
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=88.01 E-value=12 Score=39.07 Aligned_cols=73 Identities=26% Similarity=0.348 Sum_probs=57.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019163 183 KRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQA 255 (345)
Q Consensus 183 KR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~ 255 (345)
|+++-+-++=+.-.++....+.....||..++.|+.++..+..++.........+...+..+..+|..++.|.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 6666665555555555566667778899999999999999999998888888888888888888888888766
No 74
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=87.91 E-value=3.2 Score=43.62 Aligned_cols=47 Identities=15% Similarity=0.323 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRD-TTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~-~~~L~sEN~eLK~RLQaLEq 253 (345)
..|+.+-+.|..||+.|+++...+..+ ...|.++..+|..+.+.|..
T Consensus 76 ~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~ 123 (472)
T TIGR03752 76 AKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKS 123 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444445555555554433332222 33455666666555554443
No 75
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=87.74 E-value=23 Score=32.87 Aligned_cols=57 Identities=19% Similarity=0.259 Sum_probs=37.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 019163 183 KRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTA 239 (345)
Q Consensus 183 KR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~s 239 (345)
..+++.+++-++-..+=..-+..+..++.++..|+.|+..|..++..++++...|..
T Consensus 72 ~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~ 128 (201)
T PF13851_consen 72 EELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYR 128 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677666666666666666677777777777777777666666665555543
No 76
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=87.33 E-value=18 Score=38.89 Aligned_cols=65 Identities=20% Similarity=0.249 Sum_probs=39.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019163 183 KRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLR 247 (345)
Q Consensus 183 KR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~R 247 (345)
|....+++-..........-+..++.|+..+...+.++..|..+...+......|..|+..|+.+
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q 214 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQ 214 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666666666666666677777666666666666666666655555555555554443
No 77
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=87.21 E-value=14 Score=40.60 Aligned_cols=39 Identities=18% Similarity=0.303 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELK 245 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK 245 (345)
+-+..+.++|+.|...|+.++...+.++..|+.|..+|+
T Consensus 541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr 579 (697)
T PF09726_consen 541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELR 579 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335556666666666666666666666666666555443
No 78
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=87.15 E-value=19 Score=33.18 Aligned_cols=39 Identities=31% Similarity=0.451 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKEL 244 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eL 244 (345)
..+|+.++..|+.++..|..++..+...+..+...+.++
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~ 160 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEEL 160 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777777766666555553
No 79
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=86.95 E-value=24 Score=34.18 Aligned_cols=49 Identities=18% Similarity=0.221 Sum_probs=27.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 183 KRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQ 231 (345)
Q Consensus 183 KR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lq 231 (345)
+-++.+.+-.+.+.+.-.-++.-+++|+.+|..++.+...++.++..++
T Consensus 31 ~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e 79 (239)
T COG1579 31 KALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAE 79 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555566666666666666666666666555544
No 80
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=86.95 E-value=13 Score=34.51 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
.+..+..++..++..+..|..++..+.++......+-.+++..++...
T Consensus 57 ~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~ 104 (302)
T PF10186_consen 57 EIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRR 104 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555566666666665555555555555555544444433
No 81
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=86.81 E-value=11 Score=43.28 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 204 RYTSELERKVQTLQTEATTLSAQVT 228 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql~ 228 (345)
..|++||.+++.++.+...+.+.+.
T Consensus 448 ~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 448 EQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555444444444443
No 82
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=86.35 E-value=17 Score=35.86 Aligned_cols=87 Identities=21% Similarity=0.320 Sum_probs=68.8
Q ss_pred cChHHHHHHHHhHHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 019163 180 IDPKRAKRILANRQSA--ARSKERKIRY-TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAH 256 (345)
Q Consensus 180 ~DpKR~KRiLsNRESA--rRSReRKkqy-IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~ 256 (345)
++-||+|-..+---+- ++.|+-+.+| |.+|+.+-+.|+.||..|+++...|-.+.+.|..+-.+|.+.|..+.++++
T Consensus 70 ~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~ 149 (292)
T KOG4005|consen 70 VQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQ 149 (292)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHH
Confidence 4568888655543332 2344556666 689999999999999999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHH
Q 019163 257 LRDALNEALREEV 269 (345)
Q Consensus 257 LrdalNE~L~eEV 269 (345)
.. +-+..+|+
T Consensus 150 ~~---~~v~eee~ 159 (292)
T KOG4005|consen 150 HN---TRVIEEEN 159 (292)
T ss_pred Hh---hHHHhhhh
Confidence 77 45565665
No 83
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=86.21 E-value=1.2 Score=40.86 Aligned_cols=53 Identities=19% Similarity=0.326 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALN 262 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalN 262 (345)
|+++|.|++.--.+|.-|..+|. +...|..++..||..+..|.++..+++.+.
T Consensus 2 LeD~EsklN~AIERnalLE~ELd----EKE~L~~~~QRLkDE~RDLKqEl~V~ek~~ 54 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELD----EKENLREEVQRLKDELRDLKQELIVQEKLR 54 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCH---------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999884 356688888888888887777776665443
No 84
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=86.09 E-value=15 Score=36.58 Aligned_cols=66 Identities=24% Similarity=0.418 Sum_probs=38.9
Q ss_pred hHHHHhhccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019163 172 DRLAELALIDPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAM 251 (345)
Q Consensus 172 e~laEla~~DpKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaL 251 (345)
+.|+| +.+|-.|=|+.| ..|..+-..|.-++..|..+|..++..+..+..|+.+ ++..+
T Consensus 84 ~~l~e---vEekyrkAMv~n---------------aQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~e---K~~el 142 (302)
T PF09738_consen 84 DSLAE---VEEKYRKAMVSN---------------AQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYRE---KIREL 142 (302)
T ss_pred HHHHH---HHHHHHHHHHHH---------------hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 34555 577889999999 3455555666666666666666666655555555433 34444
Q ss_pred HHHHHHH
Q 019163 252 EQQAHLR 258 (345)
Q Consensus 252 Eqq~~Lr 258 (345)
|.+.+..
T Consensus 143 Er~K~~~ 149 (302)
T PF09738_consen 143 ERQKRAH 149 (302)
T ss_pred HHHHHHH
Confidence 5444433
No 85
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.90 E-value=2.6 Score=30.85 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019163 216 LQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQA 250 (345)
Q Consensus 216 Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQa 250 (345)
|+.+...|......|..++..|..||..|+..+..
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~ 37 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQE 37 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555444433
No 86
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=85.80 E-value=32 Score=32.42 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVT 228 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~ 228 (345)
..|+.++..|+..|..|...++
T Consensus 59 ~~l~~e~e~L~~~~~~l~~~v~ 80 (251)
T PF11932_consen 59 RQLEREIENLEVYNEQLERQVA 80 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 87
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=85.67 E-value=22 Score=38.30 Aligned_cols=60 Identities=20% Similarity=0.308 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019163 194 SAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 194 SArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEq 253 (345)
.|.+.+..=..-+.+++..+..|++|...+...+..++.+...|..||..|...|+.+..
T Consensus 131 ~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 131 KAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 343444444444555666666777777777777777777777777777776666655543
No 88
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=85.59 E-value=6.1 Score=32.54 Aligned_cols=46 Identities=24% Similarity=0.317 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAM 251 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaL 251 (345)
|.-|.-+|..|..+|..|..++..+......|..||..||..-+..
T Consensus 20 I~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~W 65 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 65 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555666666555444333
No 89
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=85.50 E-value=12 Score=36.70 Aligned_cols=42 Identities=17% Similarity=0.231 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLR 247 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~R 247 (345)
+..|..++..+..+...++.++..++.+...+..+-.+++.+
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~ 252 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQ 252 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444443333333
No 90
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=85.39 E-value=6.4 Score=33.92 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019163 208 ELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELK 245 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK 245 (345)
+|=.++..|+.....|..++..|+.....|..||.+|+
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~ 42 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALR 42 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667778888888888888888888888888888874
No 91
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=85.09 E-value=16 Score=32.38 Aligned_cols=56 Identities=21% Similarity=0.305 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHH
Q 019163 201 RKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLT---AENKELKLRLQAMEQQAH 256 (345)
Q Consensus 201 RKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~---sEN~eLK~RLQaLEqq~~ 256 (345)
+|-.-|..|..+++.|+.+...+..++..+........ ..+..|..||+.||.+..
T Consensus 32 ~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele 90 (143)
T PF12718_consen 32 QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELE 90 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHH
Confidence 34445556666666666666666665555554433322 234456677777776643
No 92
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=85.08 E-value=15 Score=35.12 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019163 209 LERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 209 LE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEq 253 (345)
||.+...+.++...|..++...+.+......++.+|+.+.+.+..
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~ 193 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQD 193 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 555555555566666666666666666666666666655555543
No 93
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=85.07 E-value=17 Score=33.54 Aligned_cols=9 Identities=44% Similarity=0.541 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 019163 266 REEVQRLKI 274 (345)
Q Consensus 266 ~eEV~rLk~ 274 (345)
.+||..|+.
T Consensus 169 ~~ei~~lk~ 177 (189)
T PF10211_consen 169 QEEIDFLKK 177 (189)
T ss_pred HHHHHHHHH
Confidence 344444443
No 94
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=84.88 E-value=0.037 Score=55.76 Aligned_cols=52 Identities=37% Similarity=0.399 Sum_probs=43.8
Q ss_pred ChHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 019163 181 DPKRAKRILANRQSAAR---SKERKIRYTSELERKVQTLQ-TEATTLSAQVTMLQR 232 (345)
Q Consensus 181 DpKR~KRiLsNRESArR---SReRKkqyIeELE~KVq~Lq-~EN~~Ls~ql~~Lqr 232 (345)
+.|++.|..+|+.+|.+ +|.||+.+..+|..+|+.|+ .++..|..++..|+.
T Consensus 152 ~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqn 207 (395)
T KOG1414|consen 152 EEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQN 207 (395)
T ss_pred hHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCcccccccc
Confidence 44899999999999999 99999999999999999999 777776666555433
No 95
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=84.80 E-value=6.6 Score=33.49 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019163 208 ELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 248 (345)
+|=..+..|+.....|..++..|+.....|..||.+|+..-
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN 45 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIEN 45 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788888888888888888888888888888875443
No 96
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=84.79 E-value=8 Score=32.51 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019163 214 QTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 214 q~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEq 253 (345)
..++.+...+..++..++.+...+...|.+|-..+..+..
T Consensus 6 ~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~ 45 (106)
T PF05837_consen 6 LNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAE 45 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444433
No 97
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=84.58 E-value=24 Score=40.73 Aligned_cols=54 Identities=17% Similarity=0.306 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 199 KERKIRYTSELERKV-QTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 199 ReRKkqyIeELE~KV-q~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
..+..+.|.+++... +.++.+..++..++..|+++...++..++.|+..++.+.
T Consensus 374 ~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~ 428 (1074)
T KOG0250|consen 374 VDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVK 428 (1074)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444 444444444444445555555555555555544444443
No 98
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=84.48 E-value=26 Score=39.79 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=56.3
Q ss_pred HHHhhccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 174 LAELALIDPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 174 laEla~~DpKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
+++-+..|..++|--++-+...|---++-+..++++|.+....+.....|...++.|......|...|...-+++..-+
T Consensus 380 ~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~ 458 (980)
T KOG0980|consen 380 EAQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAE 458 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666777777777777766677777788888888888888888888888877777777777766655554433
No 99
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=84.46 E-value=14 Score=36.56 Aligned_cols=49 Identities=24% Similarity=0.411 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEq 253 (345)
-+.+++.+++.|+.|...|..++..|+.+...+..|-..|+.++..++.
T Consensus 44 ~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~ 92 (314)
T PF04111_consen 44 DIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDE 92 (314)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666666666666666666665555543
No 100
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=84.43 E-value=36 Score=36.73 Aligned_cols=45 Identities=13% Similarity=0.259 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAM 251 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaL 251 (345)
+.|+.+++.+...+..|..+...|..++..+.....+|...+..|
T Consensus 188 e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l 232 (546)
T PF07888_consen 188 EQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTL 232 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333
No 101
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=84.39 E-value=13 Score=39.85 Aligned_cols=51 Identities=29% Similarity=0.324 Sum_probs=37.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019163 226 QVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIAT 276 (345)
Q Consensus 226 ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~ 276 (345)
++..+......+.+|...+|.++..||.+...--+.|..|..++.++|..+
T Consensus 142 ~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 142 KLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 333344556678888888888888888876555588888888888888643
No 102
>PHA02562 46 endonuclease subunit; Provisional
Probab=84.36 E-value=31 Score=35.35 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019163 208 ELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKEL 244 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eL 244 (345)
.|+.++..|+.++..+..++..+..++..+..+..++
T Consensus 362 ~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 398 (562)
T PHA02562 362 KVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSEL 398 (562)
T ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444434444444444444443333333
No 103
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=84.32 E-value=23 Score=36.26 Aligned_cols=65 Identities=31% Similarity=0.463 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 019163 209 LERKVQTLQTEATTLSAQVTMLQRD---TTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATGQIP 280 (345)
Q Consensus 209 LE~KVq~Lq~EN~~Ls~ql~~Lqr~---~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~geip 280 (345)
|..+++.|+.+.+.++.++..+... ...|..+-++||.++..+|. ....+++++..+-..++-++
T Consensus 40 l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~iPN~~ 107 (425)
T PRK05431 40 LQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEA-------ELDELEAELEELLLRIPNLP 107 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhCCCCC
Confidence 3344444444444555544432211 22455555666666655553 23344455555544454433
No 104
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=84.28 E-value=18 Score=33.79 Aligned_cols=75 Identities=19% Similarity=0.268 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019163 204 RYTSELERKVQTLQTEATTLSAQVTMLQRDTT----GLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATGQ 278 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~----~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~ge 278 (345)
.|...||..+..|+.+...++.++..+...-. ....+.+.|..++..+....---+.-...|+.||.+|+....+
T Consensus 136 ~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~ 214 (221)
T PF05700_consen 136 IHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAE 214 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888888776655322 2333444555555544444333335556677888888766543
No 105
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=83.90 E-value=17 Score=31.48 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 019163 191 NRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLT 238 (345)
Q Consensus 191 NRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~ 238 (345)
-.+...-|+..=..--++|+..++.|+.++.....++..|+..+..+.
T Consensus 24 slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~ 71 (107)
T PF09304_consen 24 SLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEAR 71 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444333333344445555555555544444444444444433
No 106
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=83.63 E-value=35 Score=37.57 Aligned_cols=13 Identities=31% Similarity=0.549 Sum_probs=8.8
Q ss_pred HHHHHHHHHhcCC
Q 019163 267 EEVQRLKIATGQI 279 (345)
Q Consensus 267 eEV~rLk~a~gei 279 (345)
.||..||..+.++
T Consensus 643 ~ei~~lk~ki~~~ 655 (697)
T PF09726_consen 643 KEIEELKAKIAQL 655 (697)
T ss_pred HHHHHHHHHHHHH
Confidence 6777777766554
No 107
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=83.60 E-value=33 Score=37.22 Aligned_cols=46 Identities=24% Similarity=0.393 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019163 203 IRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 248 (345)
+.|+..++.+.+.+......|..++...+.++..|..+|.+||..|
T Consensus 279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888888888888887888888888888877655
No 108
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=83.48 E-value=19 Score=33.17 Aligned_cols=13 Identities=38% Similarity=0.462 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHh
Q 019163 264 ALREEVQRLKIAT 276 (345)
Q Consensus 264 ~L~eEV~rLk~a~ 276 (345)
.+++++..++.++
T Consensus 139 ~~~~~~~~~~~~a 151 (188)
T PF03962_consen 139 KLKEEIKIAKEAA 151 (188)
T ss_pred HHHHHHHHHHHHH
Confidence 3444454444443
No 109
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=83.17 E-value=36 Score=36.52 Aligned_cols=64 Identities=28% Similarity=0.453 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHH---HHHHH
Q 019163 211 RKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQ----------------AHLRDALNEALR---EEVQR 271 (345)
Q Consensus 211 ~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq----------------~~LrdalNE~L~---eEV~r 271 (345)
.|+..+..|+..|..++...+++...+..|.++++.++..|+.+ .+|. .+|+.|. +||+.
T Consensus 434 SKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLa-smNeqL~~Q~eeI~~ 512 (518)
T PF10212_consen 434 SKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLA-SMNEQLAKQREEIQT 512 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34444444455555555555554445555555555444444433 3344 5666665 88888
Q ss_pred HHHH
Q 019163 272 LKIA 275 (345)
Q Consensus 272 Lk~a 275 (345)
||.+
T Consensus 513 LK~~ 516 (518)
T PF10212_consen 513 LKLA 516 (518)
T ss_pred Hhhc
Confidence 8853
No 110
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=83.11 E-value=13 Score=39.84 Aligned_cols=51 Identities=25% Similarity=0.272 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019163 204 RYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQ 254 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq 254 (345)
+-|..+..+..+++.||..|..+|..+++....+..|+.+|+..|+++...
T Consensus 219 eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da 269 (596)
T KOG4360|consen 219 EELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDA 269 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566667778899999999999999999999999999999999877653
No 111
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=83.08 E-value=44 Score=32.91 Aligned_cols=7 Identities=57% Similarity=0.671 Sum_probs=3.2
Q ss_pred cccCCcc
Q 019163 39 FRFDDFL 45 (345)
Q Consensus 39 ~~~~dd~ 45 (345)
++|=||+
T Consensus 25 I~F~dDl 31 (325)
T PF08317_consen 25 IRFYDDL 31 (325)
T ss_pred ceeCCCc
Confidence 3444444
No 112
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.07 E-value=10 Score=42.72 Aligned_cols=73 Identities=25% Similarity=0.314 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 019163 203 IRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATGQIPAA 282 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~geip~~ 282 (345)
.+|+++|..-++.+......|-.+++.+++....|..||.+|+..++... .....|++++.-||...|-+.+.
T Consensus 649 ~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~-------s~hsql~~q~~~Lk~qLg~~~~~ 721 (970)
T KOG0946|consen 649 EKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFI-------SEHSQLKDQLDLLKNQLGIISSK 721 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcccccc
Confidence 45677777777777777777777777777777777777777766665442 23334555566666666644443
No 113
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=82.61 E-value=22 Score=33.00 Aligned_cols=47 Identities=19% Similarity=0.310 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019163 198 SKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKEL 244 (345)
Q Consensus 198 SReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eL 244 (345)
.+.+....+.+-+.....++.+...|..+|..|+++...+..++...
T Consensus 111 ~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~ 157 (190)
T PF05266_consen 111 ERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAK 157 (190)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444455555555555555444444444333
No 114
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=82.52 E-value=22 Score=33.73 Aligned_cols=40 Identities=33% Similarity=0.321 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019163 234 TTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATG 277 (345)
Q Consensus 234 ~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~g 277 (345)
+..+..||.+||.++..++.+... .+.|++|.++|+....
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~----~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQE----LEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhc
Confidence 444555555555555555443221 1345566666665543
No 115
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=82.37 E-value=10 Score=33.20 Aligned_cols=38 Identities=24% Similarity=0.396 Sum_probs=18.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 229 MLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALR 266 (345)
Q Consensus 229 ~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~ 266 (345)
.++++-..++.|-.+|+.||..||.+.+-.+.++.-|.
T Consensus 15 r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~ 52 (134)
T PF08232_consen 15 RFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLK 52 (134)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555444444444443
No 116
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=82.32 E-value=18 Score=39.56 Aligned_cols=61 Identities=18% Similarity=0.289 Sum_probs=32.9
Q ss_pred HHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hHHHHHHHHHHHHHH
Q 019163 188 ILANRQSAARSKERK-IRYTSELERKVQTLQTEATTLSAQVTMLQRD----------TTGLTAENKELKLRL 248 (345)
Q Consensus 188 iLsNRESArRSReRK-kqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~----------~~~L~sEN~eLK~RL 248 (345)
...+|..+.+.+..+ ...+.+|+.++..|+.++..|..++..+.++ ...+..++..|+.+|
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L 490 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKEL 490 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 334444444444333 3345666666666666666666666555433 334555666665554
No 117
>PF15294 Leu_zip: Leucine zipper
Probab=82.19 E-value=4.7 Score=39.81 Aligned_cols=45 Identities=22% Similarity=0.451 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019163 209 LERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 209 LE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEq 253 (345)
|..++..|+.||..|+.++..++..+.....|+..|+..|..+.-
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888899999998888888888888888888877766654
No 118
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=82.03 E-value=17 Score=41.55 Aligned_cols=85 Identities=27% Similarity=0.322 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 192 RQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTG----------LTAENKELKLRLQAMEQQAHLRDAL 261 (345)
Q Consensus 192 RESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~----------L~sEN~eLK~RLQaLEqq~~Lrdal 261 (345)
++-+..-=++|..-+.+|++....|..+...+..+|..|+++.+. |...|-+|..|+..||.+.---+++
T Consensus 398 ~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEal 477 (1243)
T KOG0971|consen 398 HQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEAL 477 (1243)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence 344555556777777777777777777777777777777776443 5555666666665555553333333
Q ss_pred HH--------------HHHHHHHHHHHHh
Q 019163 262 NE--------------ALREEVQRLKIAT 276 (345)
Q Consensus 262 NE--------------~L~eEV~rLk~a~ 276 (345)
++ -|++||..++.+.
T Consensus 478 ee~~EQL~Esn~ele~DLreEld~~~g~~ 506 (1243)
T KOG0971|consen 478 EEMNEQLQESNRELELDLREELDMAKGAR 506 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 22 2557777665443
No 119
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=81.33 E-value=8.2 Score=44.21 Aligned_cols=77 Identities=25% Similarity=0.302 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019163 203 IRYTSELERKVQTLQTEATTLSAQVTMLQRDT--TGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATGQI 279 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~--~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~gei 279 (345)
+.++++|+.--++|..+-.-|.++|.-+..+. ..+++|+=.||+++..|+.+-..-....+.|.+|...|.+....+
T Consensus 263 kdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL 341 (1195)
T KOG4643|consen 263 KDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQL 341 (1195)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666666666666666777777766666 678888899999999999886665577888889999988776443
No 120
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=81.11 E-value=14 Score=37.06 Aligned_cols=45 Identities=44% Similarity=0.508 Sum_probs=35.3
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKV---QTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAM 251 (345)
Q Consensus 207 eELE~KV---q~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaL 251 (345)
++|..|. ...+.|+..|..+|..+++.+..+..||.+|...|...
T Consensus 220 eELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~s 267 (306)
T PF04849_consen 220 EELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQAS 267 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3444443 34567888899999999999999999999998887654
No 121
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=81.09 E-value=37 Score=29.61 Aligned_cols=12 Identities=58% Similarity=0.717 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 019163 262 NEALREEVQRLK 273 (345)
Q Consensus 262 NE~L~eEV~rLk 273 (345)
++.|+..|..||
T Consensus 98 veEL~~Dv~DlK 109 (120)
T PF12325_consen 98 VEELRADVQDLK 109 (120)
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 122
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=81.08 E-value=12 Score=35.51 Aligned_cols=37 Identities=27% Similarity=0.349 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELK 245 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK 245 (345)
.+.+|..+.+.|+.||..|..++..+ ..+..||.+|+
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~----~~l~~en~~L~ 106 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQEL----EQLEAENARLR 106 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 33344444444444444443333322 23555555553
No 123
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.05 E-value=20 Score=40.43 Aligned_cols=10 Identities=40% Similarity=0.587 Sum_probs=5.0
Q ss_pred CCCCcccccc
Q 019163 100 KPINHLRSLS 109 (345)
Q Consensus 100 ~~~~h~rS~s 109 (345)
++.+|-+|+|
T Consensus 163 spl~~~ss~s 172 (1118)
T KOG1029|consen 163 SPLPHDSSVS 172 (1118)
T ss_pred CCCCCCcchh
Confidence 4445555544
No 124
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=80.99 E-value=2.2 Score=36.10 Aligned_cols=73 Identities=19% Similarity=0.332 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAEN---KELKLRLQAMEQQAHLRDALNEALREEVQRLKIATGQIP 280 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN---~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~geip 280 (345)
..++|..+..++.|...|...| ++..+..+..+. ..+..+...++.+..-.+.+.+.|..+|..||..+..+.
T Consensus 10 r~~ae~~~~~ie~ElEeLTasL--FeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~~~ 85 (100)
T PF06428_consen 10 REEAEQEKEQIESELEELTASL--FEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVMESME 85 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3566666666666666666653 233333333333 233344444554444444566677788888887766543
No 125
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=80.95 E-value=39 Score=31.22 Aligned_cols=41 Identities=29% Similarity=0.391 Sum_probs=19.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 226 QVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLK 273 (345)
Q Consensus 226 ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk 273 (345)
+|..=++.+..|..-|..|+.+|+.+. ..|++|.+|+.+|.
T Consensus 68 rLeEEqqR~~~L~qvN~lLReQLEq~~-------~~N~~L~~dl~klt 108 (182)
T PF15035_consen 68 RLEEEQQRSEELAQVNALLREQLEQAR-------KANEALQEDLQKLT 108 (182)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 333334445555555555544443333 23455555555444
No 126
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=80.87 E-value=50 Score=31.07 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEq 253 (345)
.+|+.++..|+.|...|...+..+++....+..+-..|+.++..++.
T Consensus 52 ~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 52 QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555555543
No 127
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=80.75 E-value=13 Score=39.35 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRD 233 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~ 233 (345)
.+|+.+++.|..+|..|.++.+.|+++
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~~r 95 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQKR 95 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466666666666666666666655544
No 128
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=80.63 E-value=11 Score=37.81 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019163 204 RYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQA 250 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQa 250 (345)
..|-+|+.+++.+..||..|...+...+.....|.+|..+|+.+-..
T Consensus 241 sqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E 287 (306)
T PF04849_consen 241 SQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAE 287 (306)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777777777777777777777655433
No 129
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=80.44 E-value=7.6 Score=37.78 Aligned_cols=17 Identities=18% Similarity=0.174 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019163 214 QTLQTEATTLSAQVTML 230 (345)
Q Consensus 214 q~Lq~EN~~Ls~ql~~L 230 (345)
..|..||.+|+.++..|
T Consensus 69 ~~l~~EN~~Lr~e~~~l 85 (283)
T TIGR00219 69 NNLEYENYKLRQELLKK 85 (283)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555443
No 130
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.29 E-value=28 Score=34.35 Aligned_cols=48 Identities=23% Similarity=0.349 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
-+.+|+..+..++.+...|-.++..++.....+..++.+++..+..++
T Consensus 39 ~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~ 86 (265)
T COG3883 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQ 86 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555544444444444444444444444444433
No 131
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=79.93 E-value=16 Score=35.60 Aligned_cols=40 Identities=28% Similarity=0.319 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019163 235 TGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATG 277 (345)
Q Consensus 235 ~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~g 277 (345)
..|..||.+||.++..+..+.... .+.|++|.++||..+.
T Consensus 69 ~~l~~EN~~Lr~e~~~l~~~~~~~---~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 69 NNLEYENYKLRQELLKKNQQLEIL---TQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhc
Confidence 346666666666665553222221 2335566666665544
No 132
>PLN02320 seryl-tRNA synthetase
Probab=79.90 E-value=45 Score=35.56 Aligned_cols=65 Identities=20% Similarity=0.283 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 019163 210 ERKVQTLQTEATTLSAQVTMLQ--RDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATGQIPA 281 (345)
Q Consensus 210 E~KVq~Lq~EN~~Ls~ql~~Lq--r~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~geip~ 281 (345)
..++..|+.|.+.++.++.... .+...|..+-++||.++..+|.+. ..+.+|+..+-..++-++.
T Consensus 106 ~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~-------~~~~~~l~~~~l~iPN~~h 172 (502)
T PLN02320 106 QKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDL-------VKLTDELQLEAQSIPNMTH 172 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhCCCCCC
Confidence 3344444444444444443311 123356666677777777776432 2344455555444544433
No 133
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=79.81 E-value=14 Score=32.78 Aligned_cols=51 Identities=25% Similarity=0.397 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019163 203 IRYTSELERKVQTLQTEATTLSAQV--TMLQRDTTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~Ls~ql--~~Lqr~~~~L~sEN~eLK~RLQaLEq 253 (345)
+..+.+|+..+..|+.|...|...+ ..|......|..|+..|..+|+.|..
T Consensus 85 ~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 85 REELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666777777777777766655 35666677777788888777777765
No 134
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=79.69 E-value=25 Score=37.96 Aligned_cols=49 Identities=22% Similarity=0.384 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQA 255 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~ 255 (345)
++|..+++.|..+...+..++..+......+..+..+.+.....+|.+.
T Consensus 331 ~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~ 379 (594)
T PF05667_consen 331 EELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEEL 379 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333334444333333333333333
No 135
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=79.49 E-value=18 Score=37.60 Aligned_cols=37 Identities=11% Similarity=0.075 Sum_probs=23.1
Q ss_pred cChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 180 IDPKRAKRILANRQSAARSKERKIRYTSELERKVQTL 216 (345)
Q Consensus 180 ~DpKR~KRiLsNRESArRSReRKkqyIeELE~KVq~L 216 (345)
.++|.+||+...-+-=||-|..=...|.||-.-|=..
T Consensus 226 ~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~ 262 (411)
T KOG1318|consen 226 ALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKC 262 (411)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3445555555555666777777777777776655433
No 136
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=79.44 E-value=59 Score=30.98 Aligned_cols=38 Identities=29% Similarity=0.413 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 215 TLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 215 ~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
.+..|+..++.++..|+.+...|...|..|..+|..++
T Consensus 213 ~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 213 SAKEELKELRRQIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHH
Confidence 33444444444444444444444444444444444443
No 137
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=79.37 E-value=12 Score=37.04 Aligned_cols=61 Identities=21% Similarity=0.303 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALRE 267 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~e 267 (345)
.+.+.++...+.+...+..++..|+.++.....+...|+..++..+........|.+.|..
T Consensus 231 ~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~ 291 (344)
T PF12777_consen 231 EEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSG 291 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcc
Confidence 3344444445555555555556666666666666666666665555544444344444443
No 138
>PRK10698 phage shock protein PspA; Provisional
Probab=79.33 E-value=29 Score=32.66 Aligned_cols=59 Identities=20% Similarity=0.287 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 203 IRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDAL 261 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~Lrdal 261 (345)
...+..|+..+...+.....|..++..|+..+..+.+.-..|+.|.+..+.+.++.+.+
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~ 156 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQL 156 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466788888888888888999999999999999999999999999888887777653
No 139
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=79.22 E-value=42 Score=34.60 Aligned_cols=50 Identities=22% Similarity=0.232 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019163 199 KERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 199 ReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 248 (345)
=+|-+..+..||.-+..+..||..|..++..+.+++.+.+.|+..|...|
T Consensus 122 f~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrEL 171 (401)
T PF06785_consen 122 FMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNREL 171 (401)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHH
Confidence 34556667778888888888888888888888888877777777764433
No 140
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=79.15 E-value=4.7 Score=40.14 Aligned_cols=29 Identities=28% Similarity=0.396 Sum_probs=20.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019163 226 QVTMLQRDTTGLTAENKELKLRLQAMEQQ 254 (345)
Q Consensus 226 ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq 254 (345)
+-+.|.-++..|+.+|.+||.+++.||.+
T Consensus 249 e~E~l~ge~~~Le~rN~~LK~qa~~lerE 277 (294)
T KOG4571|consen 249 EKEALLGELEGLEKRNEELKDQASELERE 277 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566677888888888888777743
No 141
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.05 E-value=51 Score=38.71 Aligned_cols=16 Identities=13% Similarity=0.383 Sum_probs=10.0
Q ss_pred CcccccccchhccccC
Q 019163 103 NHLRSLSVDSDFFDSL 118 (345)
Q Consensus 103 ~h~rS~s~Ds~~~~~~ 118 (345)
|-.|=+-||-..++..
T Consensus 736 rr~RVvTL~G~lIe~S 751 (1293)
T KOG0996|consen 736 RRWRVVTLDGSLIEKS 751 (1293)
T ss_pred CceEEEEecceeeccc
Confidence 3355777777666655
No 142
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=79.05 E-value=0.33 Score=49.04 Aligned_cols=44 Identities=30% Similarity=0.463 Sum_probs=38.4
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 181 DPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLS 224 (345)
Q Consensus 181 DpKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls 224 (345)
|+++++=..+||.+|-++|.|||..+..|+.+...+..+|..|.
T Consensus 283 ~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~ 326 (395)
T KOG1414|consen 283 DERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL 326 (395)
T ss_pred hhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence 44665557899999999999999999999999999988888776
No 143
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=79.01 E-value=62 Score=30.98 Aligned_cols=66 Identities=23% Similarity=0.360 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 209 LERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKI 274 (345)
Q Consensus 209 LE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~ 274 (345)
|+.+...++.++..|..+..........|..+..++...+..|+.....++.....|+.++...+.
T Consensus 52 Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 52 LEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555556677777777778888888888888888888877655553
No 144
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=78.88 E-value=49 Score=33.20 Aligned_cols=57 Identities=18% Similarity=0.272 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019163 214 QTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATG 277 (345)
Q Consensus 214 q~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~g 277 (345)
..|+.....|...+..-+.....|+......|.+|+.|++.. ..++.|+++...++.
T Consensus 77 ~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqel-------kr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 77 ENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQEL-------KRCKSELERSQQAAS 133 (307)
T ss_pred HHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhc
Confidence 334444444555555555555666666666666666666532 334556666655544
No 145
>PLN02678 seryl-tRNA synthetase
Probab=78.88 E-value=36 Score=35.60 Aligned_cols=66 Identities=24% Similarity=0.287 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 019163 209 LERKVQTLQTEATTLSAQVTMLQR---DTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATGQIPA 281 (345)
Q Consensus 209 LE~KVq~Lq~EN~~Ls~ql~~Lqr---~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~geip~ 281 (345)
|..++..|+.+.+.++.++..+.. +...|..+-++||.++..+|. ....+++++..+-..++-|+.
T Consensus 45 l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~-------~~~~~~~~l~~~~~~iPNi~~ 113 (448)
T PLN02678 45 RQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEA-------EVQEAKAALDAKLKTIGNLVH 113 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhCCCCCC
Confidence 344455555555555555543221 223444455555555555553 334455666665555554433
No 146
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.53 E-value=43 Score=38.74 Aligned_cols=48 Identities=23% Similarity=0.383 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQ 254 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq 254 (345)
.+|+.+++.+...+..-+..+..-+.++..|..|-.+|+..+...+++
T Consensus 790 kdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~ 837 (1174)
T KOG0933|consen 790 KDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQ 837 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555555555555555444
No 147
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=77.88 E-value=1.4 Score=36.74 Aligned_cols=45 Identities=27% Similarity=0.407 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019163 204 RYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 248 (345)
.||+.|...+..|..+|..|..++..|+.+...+...+..|+..|
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
Confidence 588999999999999999999999988888888877777766554
No 148
>PRK02224 chromosome segregation protein; Provisional
Probab=77.81 E-value=74 Score=34.79 Aligned_cols=15 Identities=33% Similarity=0.536 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 019163 238 TAENKELKLRLQAME 252 (345)
Q Consensus 238 ~sEN~eLK~RLQaLE 252 (345)
..+.++|..++..++
T Consensus 578 ~~~~~~l~~~~~~le 592 (880)
T PRK02224 578 NSKLAELKERIESLE 592 (880)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 149
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=77.44 E-value=68 Score=30.57 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 201 RKIRYTSELERKVQTLQTEATTLSAQVTMLQRD 233 (345)
Q Consensus 201 RKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~ 233 (345)
+-+.-|..|+.++..|+..|..|..+|..++..
T Consensus 220 ~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~ 252 (312)
T PF00038_consen 220 ELRRQIQSLQAELESLRAKNASLERQLRELEQR 252 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHhhhhhhccccchhhhhhhHHHHHHH
Confidence 334445566666666666666666666655544
No 150
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=77.24 E-value=38 Score=34.78 Aligned_cols=53 Identities=26% Similarity=0.325 Sum_probs=31.7
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 019163 181 DPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLT 238 (345)
Q Consensus 181 DpKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~ 238 (345)
++..+++.+++|.. . -=...|.+|..+...|+.+...|+.+...+.++...+.
T Consensus 10 n~~~v~~~l~~R~~---~--~~vd~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~ 62 (425)
T PRK05431 10 NPEAVKEALAKRGF---P--LDVDELLELDEERRELQTELEELQAERNALSKEIGQAK 62 (425)
T ss_pred CHHHHHHHHHhcCC---c--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555521 0 01455666777777777777777777777777665533
No 151
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=77.24 E-value=12 Score=31.35 Aligned_cols=39 Identities=26% Similarity=0.361 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 019163 202 KIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAE 240 (345)
Q Consensus 202 KkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sE 240 (345)
|+.|-...|.+|..|+.++..|..++..|+.+......|
T Consensus 40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~E 78 (87)
T PF12709_consen 40 KKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREE 78 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555566666666666666665555555543333333
No 152
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=77.24 E-value=9 Score=33.92 Aligned_cols=28 Identities=25% Similarity=0.448 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRD 233 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~ 233 (345)
|.+|..++..|..++..|..++..|...
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~ 108 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSE 108 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455555555555555555555555444
No 153
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=77.12 E-value=8 Score=32.18 Aligned_cols=21 Identities=33% Similarity=0.366 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 019163 255 AHLRDALNEALREEVQRLKIAT 276 (345)
Q Consensus 255 ~~LrdalNE~L~eEV~rLk~a~ 276 (345)
.+.. ..|-.|++|+.+|+...
T Consensus 47 tr~A-~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 47 TRFA-MENIRLREELRRLQSFY 67 (86)
T ss_pred HHHH-HHHHHHHHHHHHHHHHH
Confidence 3444 56667777777777543
No 154
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.11 E-value=53 Score=33.76 Aligned_cols=41 Identities=24% Similarity=0.324 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019163 211 RKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAM 251 (345)
Q Consensus 211 ~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaL 251 (345)
.++..+++|-+.|++.-+.|..-...|+.+-.+|+++++.|
T Consensus 225 eeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L 265 (365)
T KOG2391|consen 225 EEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSL 265 (365)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443333333
No 155
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=76.63 E-value=12 Score=31.65 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 223 LSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 223 Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
+.+++..+++++..+..+|..|+.++..|.
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444455555555554443
No 156
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=76.52 E-value=41 Score=31.23 Aligned_cols=60 Identities=23% Similarity=0.334 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 202 KIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDAL 261 (345)
Q Consensus 202 KkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~Lrdal 261 (345)
-...+..|+..+..+......|..++..|+..+..+.+.-..|+.|.+....+......+
T Consensus 97 ~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~ 156 (219)
T TIGR02977 97 AQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQL 156 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566778888888888888888888888888888888888888887777766555443
No 157
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=76.07 E-value=32 Score=30.23 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDA 260 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~Lrda 260 (345)
+.|-.....|+........+|..|+.++..++.....-...|+.|+..++....
T Consensus 23 e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~ 76 (160)
T PF13094_consen 23 EQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALER 76 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555566666666666666666666667777766655533
No 158
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=75.95 E-value=23 Score=35.51 Aligned_cols=58 Identities=28% Similarity=0.393 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATG 277 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~g 277 (345)
+.|-|.+++.-++|+.+|+.||.-+++++. +.| -...|.|..|++| ++||.+||.++-
T Consensus 77 Lkes~~~l~dRetEI~eLksQL~RMrEDWI--EEE-------CHRVEAQLALKEA-----RkEIkQLkQvie 134 (305)
T PF15290_consen 77 LKESENRLHDRETEIDELKSQLARMREDWI--EEE-------CHRVEAQLALKEA-----RKEIKQLKQVIE 134 (305)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--HHH-------HHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 456677777778888888888887777643 222 2233444444432 456667776554
No 159
>PHA03155 hypothetical protein; Provisional
Probab=75.87 E-value=28 Score=30.56 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTM 229 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~ 229 (345)
-++||+.+++.|+.||..|..+|..
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3789999999999999999998843
No 160
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.86 E-value=17 Score=29.52 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 204 RYTSELERKVQTLQTEATTLSAQVTML 230 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql~~L 230 (345)
++|.+||.++..-+.-..+|...|+..
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn~~laEq 34 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELNDALAEQ 34 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777766666566665555543
No 161
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=75.84 E-value=50 Score=29.21 Aligned_cols=44 Identities=32% Similarity=0.410 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 248 (345)
.+++|+.++..|+.++..+..+|..|+..+..|..+-..+..+|
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l 58 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQL 58 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555555444444444
No 162
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=75.81 E-value=34 Score=37.99 Aligned_cols=47 Identities=23% Similarity=0.312 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEq 253 (345)
+.||.+...|..|..+++.+=.-|-.+|..|+.||-.|...+..|.+
T Consensus 72 ~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~ 118 (717)
T PF09730_consen 72 EDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQ 118 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444555566666666655555544443
No 163
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=75.74 E-value=25 Score=27.27 Aligned_cols=35 Identities=31% Similarity=0.441 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAE 240 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sE 240 (345)
|++|...|+.|......|+..+..++.+......|
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~E 39 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEE 39 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666666555544443333
No 164
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=75.62 E-value=13 Score=27.30 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHH
Q 019163 223 LSAQVTMLQRDTTGLTAENKEL 244 (345)
Q Consensus 223 Ls~ql~~Lqr~~~~L~sEN~eL 244 (345)
|......|...|..|.++|..|
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L 24 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSL 24 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555554
No 165
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=75.53 E-value=38 Score=37.55 Aligned_cols=66 Identities=30% Similarity=0.386 Sum_probs=45.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019163 187 RILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQ---VTMLQRDTTGLTAENKELKLRLQAMEQQ 254 (345)
Q Consensus 187 RiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~q---l~~Lqr~~~~L~sEN~eLK~RLQaLEqq 254 (345)
-+|.-+..|+--|-|-.+.+- |.+-+.|.+.-.-|..+ .+.|+.+...|++|-.+||+++-+||.+
T Consensus 128 svLteqVeaQgEKIrDLE~ci--e~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEke 196 (861)
T KOG1899|consen 128 SVLTEQVEAQGEKIRDLETCI--EEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKE 196 (861)
T ss_pred HHHHHHHHHhhhhHHHHHHHH--HHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHH
Confidence 478888889888877776543 33333444333333333 2678888889999999999999988844
No 166
>PF15058 Speriolin_N: Speriolin N terminus
Probab=75.50 E-value=5.2 Score=37.88 Aligned_cols=40 Identities=35% Similarity=0.440 Sum_probs=25.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 232 RDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQR 271 (345)
Q Consensus 232 r~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~r 271 (345)
.+...|+.||.+||+++..|...-+|+.+|.|+..+-..|
T Consensus 12 hqierLv~ENeeLKKlVrLirEN~eLksaL~ea~~~~~~r 51 (200)
T PF15058_consen 12 HQIERLVRENEELKKLVRLIRENHELKSALGEACAEPSQR 51 (200)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3344466677777777777776666776766666544444
No 167
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=75.47 E-value=69 Score=37.20 Aligned_cols=61 Identities=25% Similarity=0.357 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 019163 203 IRYTSELERKVQTLQTEATTLSAQV-TMLQRDTTGLTAENKELKLRLQAMEQQ-AHLRDALNE 263 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~Ls~ql-~~Lqr~~~~L~sEN~eLK~RLQaLEqq-~~LrdalNE 263 (345)
..++.++..++..|+.....+.++. ..+..+...++.+-+.|+.++..+|.+ ..|++.+++
T Consensus 364 ~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~ 426 (1074)
T KOG0250|consen 364 ENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNE 426 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444 344444455555555555555555543 344444443
No 168
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=75.47 E-value=36 Score=41.65 Aligned_cols=64 Identities=25% Similarity=0.359 Sum_probs=52.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019163 190 ANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 190 sNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEq 253 (345)
.-.+.+++++.-=+..+...|++++.|++|+.+|+..+..+.+....++.|..++..+++.+-.
T Consensus 1646 ~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~ 1709 (1930)
T KOG0161|consen 1646 RELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNA 1709 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 3667888888888888888999999999999999998888888888888888888777776543
No 169
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=75.44 E-value=80 Score=31.30 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 223 LSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRD 259 (345)
Q Consensus 223 Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~Lrd 259 (345)
|..++.+|+++..+..-.-.-||.++..+.+.++-|.
T Consensus 56 L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~eRn 92 (277)
T PF15030_consen 56 LQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRERN 92 (277)
T ss_pred HHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHHHH
Confidence 3333333333333333333334444444444444443
No 170
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=75.10 E-value=4.3 Score=31.75 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 019163 221 TTLSAQVTMLQRDTTGLTAENKEL 244 (345)
Q Consensus 221 ~~Ls~ql~~Lqr~~~~L~sEN~eL 244 (345)
..|+.+|..|+.++..|+.||..|
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~L 40 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLL 40 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 171
>PHA03162 hypothetical protein; Provisional
Probab=75.09 E-value=13 Score=33.46 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 201 RKIRYTSELERKVQTLQTEATTLSAQVT 228 (345)
Q Consensus 201 RKkqyIeELE~KVq~Lq~EN~~Ls~ql~ 228 (345)
+|+.-+++|+.+++.|+.||..|..+|.
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556789999999999999999999983
No 172
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=75.02 E-value=8.8 Score=29.25 Aligned_cols=45 Identities=29% Similarity=0.394 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019163 201 RKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 201 RKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 248 (345)
|++..|+|||.++..=. |...+ .-.....+...|..||..|+.+|
T Consensus 1 kw~~Rl~ELe~klkaer-E~R~~--d~~~a~~rl~~l~~EN~~Lr~eL 45 (52)
T PF12808_consen 1 KWLLRLEELERKLKAER-EARSL--DRSAARKRLSKLEGENRLLRAEL 45 (52)
T ss_pred CHHHHHHHHHHHHHHhH-HhccC--CchhHHHHHHHHHHHHHHHHHHH
Confidence 35667777777765422 11111 11223333444555555554444
No 173
>smart00338 BRLZ basic region leucin zipper.
Probab=74.98 E-value=23 Score=26.76 Aligned_cols=27 Identities=30% Similarity=0.500 Sum_probs=14.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 226 QVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 226 ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
.+..|+.+...|..+|..|+.++..|+
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~ 53 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLR 53 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666666655555444
No 174
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=74.97 E-value=20 Score=34.34 Aligned_cols=39 Identities=18% Similarity=0.298 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019163 216 LQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQ 254 (345)
Q Consensus 216 Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq 254 (345)
|+.|+..+.+.+..|+.+......+-..+.....+|..|
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq 187 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQ 187 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444443334444333
No 175
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=74.89 E-value=16 Score=28.20 Aligned_cols=36 Identities=22% Similarity=0.443 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQA 255 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~ 255 (345)
|.+||.++..+.....+ +..||.+|+..++.+++..
T Consensus 2 i~elEn~~~~~~~~i~t--------------vk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 2 IDELENELPRIESSINT--------------VKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 45666666655554333 4455666666666666543
No 176
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=74.81 E-value=45 Score=36.46 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGLT 238 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~ 238 (345)
.+|+.+|..|+.++..|..+|..++.+...-+
T Consensus 82 ~~L~~everLraei~~l~~~I~~~e~e~~~~e 113 (632)
T PF14817_consen 82 RELEKEVERLRAEIQELDKEIESREREVSRQE 113 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666665544433
No 177
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=74.62 E-value=20 Score=34.46 Aligned_cols=103 Identities=24% Similarity=0.362 Sum_probs=68.3
Q ss_pred hhccCChhHHHHhhccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhHHHH
Q 019163 165 VKKAVDRDRLAELALIDPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVT------MLQRDTTGLT 238 (345)
Q Consensus 165 ~kkim~~e~laEla~~DpKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~------~Lqr~~~~L~ 238 (345)
+.|+.+.+.|.--+..||+-..| ...+..=...|++|..+|..+++|...|..... .-+.....|.
T Consensus 98 KtKafSkeGL~~~~k~dp~e~ek--------~e~~~wl~~~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~ 169 (233)
T PF04065_consen 98 KTKAFSKEGLMAASKLDPKEKEK--------EEARDWLKDSIDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEELE 169 (233)
T ss_pred cccccchhhhhcccccCcchHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHHH
Confidence 45677777777555567766554 345566778899999999999999998886533 2444555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc
Q 019163 239 AENKELKLRLQAMEQQAHLRDALNEALR-EEVQRLKIATG 277 (345)
Q Consensus 239 sEN~eLK~RLQaLEqq~~LrdalNE~L~-eEV~rLk~a~g 277 (345)
.-....+..+..||.-.++-+ |+.|. ++|..++-.+-
T Consensus 170 ~~ierhk~Hi~kLE~lLR~L~--N~~l~~e~V~~ikedie 207 (233)
T PF04065_consen 170 SRIERHKFHIEKLELLLRLLD--NDELDPEQVEDIKEDIE 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHH
Confidence 666677777888886555543 44444 55666664443
No 178
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=74.56 E-value=69 Score=32.06 Aligned_cols=38 Identities=16% Similarity=0.207 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 019163 203 IRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAE 240 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sE 240 (345)
-+.++.||.....+.+....|..-|..|++.+..|+.-
T Consensus 90 y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLEra 127 (333)
T KOG1853|consen 90 YQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERA 127 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHh
Confidence 34455666666666666666666666666665555443
No 179
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=74.02 E-value=7 Score=40.46 Aligned_cols=75 Identities=21% Similarity=0.298 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 192 RQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALRE 267 (345)
Q Consensus 192 RESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~e 267 (345)
-++|+-.|+|-.+--...|..+..+..|...|++++...++....|..|+.-||.-+..+|..-+.. .-|+.|+.
T Consensus 226 eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~-~pNeqLk~ 300 (561)
T KOG1103|consen 226 EEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHL-RPNEQLKG 300 (561)
T ss_pred hHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc-CccccccC
Confidence 4678888888888888899999999999999999999999999999999999998888888654443 34555553
No 180
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=73.79 E-value=14 Score=35.72 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019163 203 IRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 248 (345)
++...|||.++..+..++..|..++.. |.+.|-.|=.++
T Consensus 92 R~Rn~ELE~elr~~~~~~~~L~~Ev~~-------L~~DN~kLYEKi 130 (248)
T PF08172_consen 92 RQRNAELEEELRKQQQTISSLRREVES-------LRADNVKLYEKI 130 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 344577777777777766666666655 555555553333
No 181
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=73.78 E-value=19 Score=43.67 Aligned_cols=48 Identities=25% Similarity=0.281 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQ 254 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq 254 (345)
..|+..+.-|+.++.+|..++.....+...|..||..-|+|.|.|..+
T Consensus 1253 ~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k 1300 (1822)
T KOG4674|consen 1253 EKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEK 1300 (1822)
T ss_pred HHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556667777788888888888888888888889998888876
No 182
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=73.73 E-value=26 Score=30.90 Aligned_cols=43 Identities=16% Similarity=0.401 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019163 236 GLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATGQ 278 (345)
Q Consensus 236 ~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~ge 278 (345)
.|..-.++|..||+.+.....-..++.+.+++||..++-.+..
T Consensus 58 ~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~ 100 (126)
T PF07889_consen 58 SLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQ 100 (126)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4555666666677666666555556666666666666655443
No 183
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=73.70 E-value=48 Score=27.06 Aligned_cols=90 Identities=21% Similarity=0.302 Sum_probs=50.0
Q ss_pred cChHHHHHHHHhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHH
Q 019163 180 IDPKRAKRILANRQSAARSKERKI------RYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTA---ENKELKLRLQA 250 (345)
Q Consensus 180 ~DpKR~KRiLsNRESArRSReRKk------qyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~s---EN~eLK~RLQa 250 (345)
+|.|.+| .|.+..+.+-.++. ..|-+|..+...|..+...|..+...+.++...+.. +-.+|+.++..
T Consensus 2 LDik~ir---~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~ 78 (108)
T PF02403_consen 2 LDIKLIR---ENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKE 78 (108)
T ss_dssp -SHHHHH---HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHH
T ss_pred CCHHHHH---hCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 3444444 47777666666553 445556666666666666666666666666555554 34455556655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019163 251 MEQQAHLRDALNEALREEVQRL 272 (345)
Q Consensus 251 LEqq~~LrdalNE~L~eEV~rL 272 (345)
+-.+..-.+..-..+.+++..+
T Consensus 79 lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 79 LKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444434444444544443
No 184
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=73.55 E-value=63 Score=28.31 Aligned_cols=80 Identities=24% Similarity=0.272 Sum_probs=35.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 019163 189 LANRQSAARSKERKIRYTSELE-------RKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQ--QAHLRD 259 (345)
Q Consensus 189 LsNRESArRSReRKkqyIeELE-------~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEq--q~~Lrd 259 (345)
+..-+.|...-.+|+..++.|+ .+|..|+.+...+..++..+..++..+. ..++..+..++. ...++.
T Consensus 116 ~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~---~~~~~El~~f~~~~~~dlk~ 192 (218)
T cd07596 116 LLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEIS---ERLKEELKRFHEERARDLKA 192 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443 2444444555555555544444433332 233334444433 344554
Q ss_pred HHHHHHHHHHHH
Q 019163 260 ALNEALREEVQR 271 (345)
Q Consensus 260 alNE~L~eEV~r 271 (345)
++.+.++..|..
T Consensus 193 ~l~~~~~~qi~~ 204 (218)
T cd07596 193 ALKEFARLQVQY 204 (218)
T ss_pred HHHHHHHHHHHH
Confidence 555555444433
No 185
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=73.34 E-value=48 Score=30.31 Aligned_cols=55 Identities=24% Similarity=0.366 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDA 260 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~Lrda 260 (345)
+..|+..+..+......|...+..++..+..+..+-..|+.+......+..+.+.
T Consensus 100 ~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~ 154 (221)
T PF04012_consen 100 AERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEA 154 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555566666666666666666666665555555555544443
No 186
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=73.05 E-value=37 Score=30.62 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHhc
Q 019163 261 LNEALREEVQRLKIATG 277 (345)
Q Consensus 261 lNE~L~eEV~rLk~a~g 277 (345)
++-.+..||..||..+-
T Consensus 132 ~~~ki~~ei~~lr~~iE 148 (177)
T PF07798_consen 132 LNNKIDTEIANLRTEIE 148 (177)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455566666665543
No 187
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=73.05 E-value=31 Score=33.13 Aligned_cols=46 Identities=15% Similarity=0.299 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQA 250 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQa 250 (345)
-+-+|..++..|+.|+.+|+-+|+.++.+...+....++|-..|..
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468888899999999999999888888777777777666555443
No 188
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=72.90 E-value=61 Score=28.94 Aligned_cols=68 Identities=18% Similarity=0.170 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019163 209 LERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIAT 276 (345)
Q Consensus 209 LE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~ 276 (345)
....+...+..+..+..+|+.|......-..+-..|...+........-++...+.|+.|-+.||.=.
T Consensus 31 a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa 98 (135)
T TIGR03495 31 ANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRWA 98 (135)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHh
Confidence 33344555556666666666665555544555555655566666555556666666776777777543
No 189
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=72.71 E-value=24 Score=28.34 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=21.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 019163 229 MLQRDTTGLTAENKELKLRLQAMEQQAH 256 (345)
Q Consensus 229 ~Lqr~~~~L~sEN~eLK~RLQaLEqq~~ 256 (345)
..+.....|..||=-||+||-.|+....
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3445566788899999999988887644
No 190
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=72.65 E-value=49 Score=33.37 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQV 227 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql 227 (345)
+-+-.++..|+.+|..|+..-
T Consensus 44 ~~ek~~~~~L~~e~~~lr~~s 64 (310)
T PF09755_consen 44 ETEKARCKHLQEENRALREAS 64 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555543
No 191
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=72.63 E-value=17 Score=38.41 Aligned_cols=54 Identities=20% Similarity=0.303 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLK 273 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk 273 (345)
+.+-+.++.+|+.+...|+.++. .|..++..+..+|+.+| ..+..|++++..++
T Consensus 71 LteqQ~kasELEKqLaaLrqElq-------~~saq~~dle~KIkeLE-------aE~~~Lk~Ql~a~~ 124 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIRRELD-------VLNKQRGDDQRRIEKLG-------QDNAALAEQVKALG 124 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHhhhhhhHHHHHHHHH-------HHHHHHHHHHHhhh
Confidence 34555555555555554443333 34444444444454444 44555655554333
No 192
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=72.58 E-value=75 Score=30.76 Aligned_cols=73 Identities=18% Similarity=0.253 Sum_probs=40.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 019163 185 AKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQ--AHLRDALN 262 (345)
Q Consensus 185 ~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq--~~LrdalN 262 (345)
+|-.++-|+-++---++|.+|+..+...-..+..|...+..++... |+.+|..++..+.+ ..++.++.
T Consensus 151 lK~vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a----------~~~~k~e~~Rf~~~k~~D~k~~~~ 220 (243)
T cd07666 151 LMGVIKRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA----------NNALKADWERWKQNMQTDLRSAFT 220 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777776665443344444444444444432 55566666665544 34555555
Q ss_pred HHHHH
Q 019163 263 EALRE 267 (345)
Q Consensus 263 E~L~e 267 (345)
+.++.
T Consensus 221 ~yae~ 225 (243)
T cd07666 221 DMAEN 225 (243)
T ss_pred HHHHH
Confidence 55543
No 193
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=72.55 E-value=44 Score=32.40 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019163 193 QSAARSKERKIRYTS----ELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKE 243 (345)
Q Consensus 193 ESArRSReRKkqyIe----ELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~e 243 (345)
+|+--.-+||.-.++ .++.++++|+.++..|..+|+.+...+..-+.-|.+
T Consensus 170 eSsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E 224 (259)
T KOG4001|consen 170 ESSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEE 224 (259)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 455556666655543 477788888888888888888777665554444444
No 194
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=72.52 E-value=24 Score=36.28 Aligned_cols=74 Identities=20% Similarity=0.327 Sum_probs=46.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhHHHHHHHHHHHHHH
Q 019163 183 KRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTML--------------QRDTTGLTAENKELKLRL 248 (345)
Q Consensus 183 KR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~L--------------qr~~~~L~sEN~eLK~RL 248 (345)
-|+|.+.-|-|--+.-|+ -+++-..+.++|+..|..|..++..+ +.-...+..||..|+.+|
T Consensus 75 ~kirk~~e~~eglr~i~e----s~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL 150 (401)
T PF06785_consen 75 TKIRKITEKDEGLRKIRE----SVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQL 150 (401)
T ss_pred HHHHHHHhccHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhH
Confidence 455556666555555443 23444455666777777776665543 344555788899888888
Q ss_pred HHHHHHHHHHHH
Q 019163 249 QAMEQQAHLRDA 260 (345)
Q Consensus 249 QaLEqq~~Lrda 260 (345)
+++.+++.-++.
T Consensus 151 ~~l~~e~~Ekee 162 (401)
T PF06785_consen 151 DALQQECGEKEE 162 (401)
T ss_pred HHHHHHHhHhHH
Confidence 888888744433
No 195
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=72.39 E-value=77 Score=33.47 Aligned_cols=40 Identities=20% Similarity=0.309 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019163 208 ELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLR 247 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~R 247 (345)
.+-.+...|.+|...+.++++..+.+...|..||..|..+
T Consensus 31 ~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~ 70 (459)
T KOG0288|consen 31 RLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEE 70 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555555555555555555554433
No 196
>PRK14127 cell division protein GpsB; Provisional
Probab=72.33 E-value=28 Score=30.02 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019163 211 RKVQTLQTEATTLSAQVTMLQR 232 (345)
Q Consensus 211 ~KVq~Lq~EN~~Ls~ql~~Lqr 232 (345)
.++..|+.++..|..++..++.
T Consensus 44 ~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 44 KEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444443333333
No 197
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=71.96 E-value=33 Score=31.59 Aligned_cols=14 Identities=29% Similarity=0.378 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 019163 203 IRYTSELERKVQTL 216 (345)
Q Consensus 203 kqyIeELE~KVq~L 216 (345)
..-+.+|+.++..+
T Consensus 82 ~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 82 EKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 198
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=71.88 E-value=77 Score=28.64 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 019163 213 VQTLQTEATTLSAQVTMLQRDTTGL 237 (345)
Q Consensus 213 Vq~Lq~EN~~Ls~ql~~Lqr~~~~L 237 (345)
+..++.+...+..++..++.++..+
T Consensus 165 ~~~~~~ei~~~~~~~~~~~~~~~~i 189 (236)
T PF09325_consen 165 VEQAENEIEEAERRVEQAKDEFEEI 189 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443333
No 199
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=71.18 E-value=27 Score=27.17 Aligned_cols=39 Identities=18% Similarity=0.350 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 019163 218 TEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAH 256 (345)
Q Consensus 218 ~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~ 256 (345)
.....+..++..++++...+..||.+|+.++..+....+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~r 62 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHER 62 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 444556666666666667777777777777766654333
No 200
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=70.50 E-value=69 Score=27.55 Aligned_cols=15 Identities=27% Similarity=0.271 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 019163 260 ALNEALREEVQRLKI 274 (345)
Q Consensus 260 alNE~L~eEV~rLk~ 274 (345)
.-|..|.+.|+.|-.
T Consensus 54 FrN~QL~kRV~~LQ~ 68 (102)
T PF10205_consen 54 FRNQQLTKRVEVLQE 68 (102)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 201
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=70.41 E-value=64 Score=27.10 Aligned_cols=52 Identities=19% Similarity=0.280 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHH
Q 019163 203 IRYTSELERKVQTLQTEATTLSAQVTML--QRDTTGLTAENKELKLRLQAMEQQ 254 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~Ls~ql~~L--qr~~~~L~sEN~eLK~RLQaLEqq 254 (345)
+.-++.|+.++.......+.+..++..| ..+.+.|..+-.+++-++..++.+
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~ 87 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSAR 87 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3444555555555555555555555555 555555555555554444444443
No 202
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=70.36 E-value=91 Score=29.94 Aligned_cols=60 Identities=17% Similarity=0.251 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQ-AHLRDALNEALR 266 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq-~~LrdalNE~L~ 266 (345)
++|..+-..+..|...+..-+..|+........|++..+..++.+..+ ..|++..|+.++
T Consensus 42 ~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~ 102 (230)
T PF10146_consen 42 EELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRK 102 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555556666666666666677766666665444433 456656555543
No 203
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=70.27 E-value=55 Score=29.51 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 240 ENKELKLRLQAMEQQAHLRDALNEALREEVQRLK 273 (345)
Q Consensus 240 EN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk 273 (345)
++..++..++.++.+..-.+...++|++.+++|.
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444334455566666666554
No 204
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=70.24 E-value=92 Score=33.58 Aligned_cols=72 Identities=24% Similarity=0.336 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q 019163 203 IRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALR---EEVQRLKI 274 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~---eEV~rLk~ 274 (345)
.+.++.++..|..|...+..+..++......+..+..+-..|+.+.+.++...++-.++.+... +|+.-|..
T Consensus 44 ~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~f~Ls~~E~~~L~~ 118 (618)
T PF06419_consen 44 NRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLERFTLSEEEEDALTS 118 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhC
Confidence 4467889999999999999999999999999999999999999999999988888766666533 66666543
No 205
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=70.07 E-value=71 Score=27.51 Aligned_cols=53 Identities=13% Similarity=0.204 Sum_probs=20.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 019163 188 ILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAE 240 (345)
Q Consensus 188 iLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sE 240 (345)
+...++....+-..=.+..-.++.++..+..+...+...+..|..++..+..+
T Consensus 32 ~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~ 84 (150)
T PF07200_consen 32 LQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQ 84 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444433333333333444444444444444444444444444444333
No 206
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=69.98 E-value=67 Score=32.95 Aligned_cols=46 Identities=26% Similarity=0.333 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHH
Q 019163 208 ELERKVQTLQTEATTLSAQVTMLQRD----TTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~ql~~Lqr~----~~~L~sEN~eLK~RLQaLEq 253 (345)
+|..+++.|+.+-+.++.++..+... ...|..+-++||.++..++.
T Consensus 41 ~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 90 (418)
T TIGR00414 41 KLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSA 90 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666653322 34566666777777777664
No 207
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=69.93 E-value=1.1e+02 Score=33.31 Aligned_cols=38 Identities=24% Similarity=0.393 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 236 GLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLK 273 (345)
Q Consensus 236 ~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk 273 (345)
....+-++++.+++.++.+++.++.+...|..|+++|.
T Consensus 444 ~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~ 481 (594)
T PF05667_consen 444 QKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLP 481 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34455556666666777777777666666666665543
No 208
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=69.68 E-value=1.4e+02 Score=34.44 Aligned_cols=15 Identities=20% Similarity=0.479 Sum_probs=10.1
Q ss_pred cccccccchhccccC
Q 019163 104 HLRSLSVDSDFFDSL 118 (345)
Q Consensus 104 h~rS~s~Ds~~~~~~ 118 (345)
.+|.+.+|-+.++.-
T Consensus 635 ~~riVTl~G~~~~~~ 649 (1163)
T COG1196 635 KYRIVTLDGDLVEPS 649 (1163)
T ss_pred CceEEecCCcEEeCC
Confidence 468888887765443
No 209
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=69.64 E-value=1.3e+02 Score=34.80 Aligned_cols=70 Identities=27% Similarity=0.299 Sum_probs=49.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019163 184 RAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQ-----VTMLQRDTTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 184 R~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~q-----l~~Lqr~~~~L~sEN~eLK~RLQaLEq 253 (345)
..-|=|.||+--.-+.++..+|-++.|.+-..|......|..= -+.+++-...++.|-++||..++....
T Consensus 1029 ~r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr~ 1103 (1189)
T KOG1265|consen 1029 GRVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKKRM 1103 (1189)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567888888888888888888888888888777776543 333444456678888888877765443
No 210
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=69.55 E-value=65 Score=28.90 Aligned_cols=60 Identities=22% Similarity=0.277 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSA---QVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALR 266 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~---ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~ 266 (345)
..|+..+.........|.. -+..|+.++..|..+|...+...+.-..+..+..++..+|.
T Consensus 30 ~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ai~~al~ 92 (155)
T PF06810_consen 30 DNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDSAIKSALK 92 (155)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444 34445555555666666444444333333344444444444
No 211
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=69.48 E-value=1.2e+02 Score=29.93 Aligned_cols=53 Identities=25% Similarity=0.268 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 200 ERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 200 eRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
+--+..++++..+...|-.++..|..++..++.+...|..||..|...+..+.
T Consensus 138 ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 138 EELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 44455566777777777777777777777777777777777777766666555
No 212
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=69.19 E-value=1.4e+02 Score=30.62 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019163 203 IRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAE----NKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATGQ 278 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sE----N~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~ge 278 (345)
...|.+|..+...|..+...|..+...+.++...+... -.+|+.++..+..+..-.++....+++++..+-..++-
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN 108 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPN 108 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34556666677777777777777777666666553322 23455555555444333333344455555554444443
Q ss_pred C
Q 019163 279 I 279 (345)
Q Consensus 279 i 279 (345)
+
T Consensus 109 ~ 109 (418)
T TIGR00414 109 I 109 (418)
T ss_pred C
Confidence 3
No 213
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=69.16 E-value=79 Score=36.77 Aligned_cols=61 Identities=25% Similarity=0.243 Sum_probs=39.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019163 183 KRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKE 243 (345)
Q Consensus 183 KR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~e 243 (345)
+-.|-.|.||.--.---+++-.-++++..|.-.|+.++..|+.++..|+..+..+.-.+.+
T Consensus 373 ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~e 433 (1195)
T KOG4643|consen 373 RALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAE 433 (1195)
T ss_pred HHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHH
Confidence 4566677777766666666666777777777777777777777766666655544443333
No 214
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=69.15 E-value=65 Score=32.73 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 019163 204 RYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAE 240 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sE 240 (345)
+-.++|+.+.+.||..+.....+++.+.+-.......
T Consensus 4 eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ss 40 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSS 40 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888888888888888777776655544433333
No 215
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=68.87 E-value=1.2e+02 Score=34.19 Aligned_cols=70 Identities=21% Similarity=0.299 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIA 275 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a 275 (345)
++.++.....+...+..|...+...+.++..|.+++..|..+|..-+.+.--+.+..+.+.+|..++..-
T Consensus 310 l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~E 379 (775)
T PF10174_consen 310 LETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGE 379 (775)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444455555555666667777777777777666666555555556666665555433
No 216
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=68.73 E-value=1.3e+02 Score=34.90 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=32.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 019163 183 KRAKRILANRQSAARSKERKIRYT---SELERKVQTLQTEATTLSAQVTMLQRDTTG 236 (345)
Q Consensus 183 KR~KRiLsNRESArRSReRKkqyI---eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~ 236 (345)
++++++-.+|.-..+.+..++... ..+..+...|+.+...+..++..++.++..
T Consensus 785 ~~l~~ie~~r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 841 (1201)
T PF12128_consen 785 KELKRIEERRAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQ 841 (1201)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777877778777776653 334445555555555555555555554433
No 217
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=68.64 E-value=81 Score=27.77 Aligned_cols=11 Identities=27% Similarity=0.395 Sum_probs=4.9
Q ss_pred HHHHHHhcCCC
Q 019163 270 QRLKIATGQIP 280 (345)
Q Consensus 270 ~rLk~a~geip 280 (345)
.||+..-..|+
T Consensus 105 ~rLk~LG~eVS 115 (136)
T PF04871_consen 105 ERLKELGEEVS 115 (136)
T ss_pred HHHHHcCCCcc
Confidence 35554433443
No 218
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=68.46 E-value=1.7e+02 Score=31.09 Aligned_cols=51 Identities=27% Similarity=0.343 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019163 194 SAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKEL 244 (345)
Q Consensus 194 SArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eL 244 (345)
.|++-..+-++.+..|....+.|+.+...|..+-..|..+..+|.++-++|
T Consensus 127 ~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~L 177 (499)
T COG4372 127 AARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQL 177 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555556666655555555555555544444444443
No 219
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=68.44 E-value=45 Score=25.11 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=13.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 226 QVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 226 ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
.+..|+..+..|..+|..|+..+..|.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~ 53 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLK 53 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555554444444
No 220
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=68.31 E-value=17 Score=31.49 Aligned_cols=44 Identities=25% Similarity=0.309 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 209 LERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 209 LE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
|..+|-.|+.-...|++++..+.+++..|.+||.+|-+-|+-|-
T Consensus 61 lItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLM 104 (120)
T KOG3650|consen 61 LITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLM 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Confidence 44566677777788999999999999999999999866655443
No 221
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=68.25 E-value=9.3 Score=31.60 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 200 ERKIRYTSELERKVQTLQTEATTLSAQVTMLQ 231 (345)
Q Consensus 200 eRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lq 231 (345)
--|+.+++.|..+++.++.+|..|..+|..+.
T Consensus 76 ~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 76 PYKKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567788888888888888888888877654
No 222
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=68.18 E-value=81 Score=27.42 Aligned_cols=55 Identities=24% Similarity=0.256 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019163 196 ARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQA 250 (345)
Q Consensus 196 rRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQa 250 (345)
.+|.+-=|--.++|-..-..|.+-+..|..+...+.+.+..|.++-.++...+..
T Consensus 22 e~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 22 ERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555556666555555556666655555444444
No 223
>PF15058 Speriolin_N: Speriolin N terminus
Probab=68.16 E-value=9.7 Score=36.09 Aligned_cols=34 Identities=32% Similarity=0.376 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLR 247 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~R 247 (345)
.+.|-.++++|-.||++|+.++. |..||.+||.-
T Consensus 7 yeGlrhqierLv~ENeeLKKlVr--------LirEN~eLksa 40 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVR--------LIRENHELKSA 40 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHH--------HHHHHHHHHHH
Confidence 36677889999999999999886 56688888654
No 224
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=68.15 E-value=21 Score=34.42 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQ 231 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lq 231 (345)
+..|..+|..|+++|-+|-+++..|+
T Consensus 109 ~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 109 ISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555554433
No 225
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=68.08 E-value=8 Score=33.93 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 203 IRYTSELERKVQTLQTEATTLSAQVTM 229 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~Ls~ql~~ 229 (345)
..-++||..+++.|+.||..|..+|..
T Consensus 2 ~~t~EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 2 DMTMEELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445899999999999999999998764
No 226
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=67.87 E-value=66 Score=26.24 Aligned_cols=70 Identities=16% Similarity=0.296 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019163 204 RYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIAT 276 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~ 276 (345)
+.++.+-.+...+..+...+..+-..++..+..-..|...++..+-.||.+-. .+.+.-.+||.+||..+
T Consensus 4 elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~---kmK~~YEeEI~rLr~eL 73 (79)
T PF08581_consen 4 ELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHR---KMKQQYEEEIARLRREL 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 45677777888888888888888888888888888888888888888886421 22345568999998764
No 227
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=67.70 E-value=40 Score=31.37 Aligned_cols=64 Identities=14% Similarity=0.153 Sum_probs=36.7
Q ss_pred chhhccCChhHHHHhhccChHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 163 DGVKKAVDRDRLAELALIDPKRAKRILA-NRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQ 231 (345)
Q Consensus 163 ~e~kkim~~e~laEla~~DpKR~KRiLs-NRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lq 231 (345)
|| ..+.=++.-+|++. ..+..+. -++..+.-=.+|++|+.+-+.+...++.+..+|..+|...+
T Consensus 109 DE-~~~~C~N~C~e~~~----~~~~~~~~~~~~~~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 109 DE-SGGKCPNTCAELGK----EYREELEEEEEIYKEGLKIRQELIEEAKKKREELEKKLEELEKEIQAAK 173 (176)
T ss_pred CC-CCCCCccHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45 44556777888863 2222222 22233344445667777777777777666666666665544
No 228
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=67.68 E-value=19 Score=38.97 Aligned_cols=9 Identities=11% Similarity=0.150 Sum_probs=3.6
Q ss_pred ccCCCCCCC
Q 019163 146 HRHSNSMDG 154 (345)
Q Consensus 146 ~~~S~s~dg 154 (345)
..-....+|
T Consensus 494 Vtf~iD~nG 502 (657)
T PTZ00186 494 VTFDIDANG 502 (657)
T ss_pred EEEEEcCCC
Confidence 333334444
No 229
>PF15294 Leu_zip: Leucine zipper
Probab=67.47 E-value=25 Score=34.88 Aligned_cols=51 Identities=27% Similarity=0.414 Sum_probs=41.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019163 228 TMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATGQ 278 (345)
Q Consensus 228 ~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~ge 278 (345)
.+|..+...|..||..||.|+..+|.++-..--....|..++..|+...+.
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~ 178 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGD 178 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 347788889999999999999999999877655677788888888875554
No 230
>PRK02119 hypothetical protein; Provisional
Probab=67.42 E-value=53 Score=26.15 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRD 233 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~ 233 (345)
+..+|.++..|+....-+...|..|...
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~ 31 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQA 31 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777666666655555443
No 231
>COG5293 Predicted ATPase [General function prediction only]
Probab=67.42 E-value=1.3e+02 Score=32.52 Aligned_cols=78 Identities=17% Similarity=0.226 Sum_probs=57.5
Q ss_pred HHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019163 186 KRILANRQSAARSKERKIR-YTSELERKVQTLQTEATTLSA---------QVTMLQRDTTGLTAENKELKLRLQAMEQQA 255 (345)
Q Consensus 186 KRiLsNRESArRSReRKkq-yIeELE~KVq~Lq~EN~~Ls~---------ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~ 255 (345)
++|..||-+--.+.-.|.+ -+.+++.+++.|..+.+++.+ +++.|.+++..+..|-.++..|+.-+.+--
T Consensus 330 r~~~e~R~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~~e~y~~l~ee~~~~~~elae~~~rie~l~k~~ 409 (591)
T COG5293 330 RAITEERHDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGVFEKYQTLCEEIIALRGELAELEYRIEPLRKLH 409 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHH
Confidence 4788888887777766644 466777777777766666443 677888888889999999999998888776
Q ss_pred HHHHHHHH
Q 019163 256 HLRDALNE 263 (345)
Q Consensus 256 ~LrdalNE 263 (345)
.+.+.++.
T Consensus 410 ~~~~~i~~ 417 (591)
T COG5293 410 ALDQYIGT 417 (591)
T ss_pred HHHHHHHH
Confidence 66655543
No 232
>PRK04406 hypothetical protein; Provisional
Probab=67.05 E-value=58 Score=26.12 Aligned_cols=28 Identities=14% Similarity=0.280 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRD 233 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~ 233 (345)
++.||.++..|+....-+..-|..|...
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~ 33 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDA 33 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777766666666655544
No 233
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.89 E-value=57 Score=31.96 Aligned_cols=19 Identities=26% Similarity=0.742 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHhcCCCC
Q 019163 263 EALREEVQRLKIATGQIPA 281 (345)
Q Consensus 263 E~L~eEV~rLk~a~geip~ 281 (345)
.+|+.+++.|++.+|.++-
T Consensus 92 ~~ie~~l~~l~~~aG~v~V 110 (247)
T COG3879 92 AALEDRLEKLRMLAGSVPV 110 (247)
T ss_pred HHHHHHHHHHHHHhccCCC
Confidence 3455678889999887643
No 234
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=66.71 E-value=44 Score=27.00 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019163 223 LSAQVTMLQRDTTGLTAENKELKLRLQAMEQQA 255 (345)
Q Consensus 223 Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~ 255 (345)
+-.=+..++.+++.++-|+-+|++++....++.
T Consensus 6 IP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqEL 38 (70)
T PF08606_consen 6 IPSLLSTLQNEWDALMLENFTLRKQLDQTRQEL 38 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567889999999999999999998888763
No 235
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=66.58 E-value=1.3e+02 Score=29.14 Aligned_cols=11 Identities=45% Similarity=0.742 Sum_probs=6.4
Q ss_pred HHHHHHHHHHH
Q 019163 263 EALREEVQRLK 273 (345)
Q Consensus 263 E~L~eEV~rLk 273 (345)
+.|++||+.|+
T Consensus 287 ~~l~~ei~~L~ 297 (297)
T PF02841_consen 287 EKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcC
Confidence 34556666663
No 236
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=66.50 E-value=10 Score=29.74 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019163 204 RYTSELERKVQTLQTEATTLSAQ 226 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~q 226 (345)
..|.+|+.++..|+.||+-|+..
T Consensus 21 ~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 21 EQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677777777777777777654
No 237
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=66.50 E-value=1.2e+02 Score=28.58 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVT 228 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~ 228 (345)
++.+|.++..|+.+...+...+.
T Consensus 136 ~e~~E~ki~eLE~el~~~~~~lk 158 (237)
T PF00261_consen 136 AEAAESKIKELEEELKSVGNNLK 158 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhchhHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 238
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=66.44 E-value=1.3e+02 Score=31.75 Aligned_cols=64 Identities=9% Similarity=0.168 Sum_probs=43.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019163 190 ANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 190 sNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEq 253 (345)
.++...++--.++...|.+-..+.+.|+.+...+..++..+..+......++.+++.+|..++.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~ 101 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNA 101 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH
Confidence 4455566666666666666666667777777777777777777777777777777777766664
No 239
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=66.25 E-value=1.5e+02 Score=29.66 Aligned_cols=41 Identities=15% Similarity=0.195 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELK 245 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK 245 (345)
++..|..++..+..++.....++..++.+...+...-...+
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~ 245 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLT 245 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444433333
No 240
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=66.09 E-value=1.2e+02 Score=28.41 Aligned_cols=15 Identities=40% Similarity=0.545 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHh
Q 019163 262 NEALREEVQRLKIAT 276 (345)
Q Consensus 262 NE~L~eEV~rLk~a~ 276 (345)
...|..||.+|...+
T Consensus 173 ~~~l~~ei~~L~~kl 187 (194)
T PF15619_consen 173 VKSLQEEIQRLNQKL 187 (194)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445667777776543
No 241
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=66.09 E-value=1.1e+02 Score=32.55 Aligned_cols=9 Identities=11% Similarity=-0.230 Sum_probs=5.2
Q ss_pred CCCCCcccc
Q 019163 99 PKPINHLRS 107 (345)
Q Consensus 99 ~~~~~h~rS 107 (345)
-|.-||+-+
T Consensus 214 cpvcR~~q~ 222 (493)
T KOG0804|consen 214 CPVCRYCQS 222 (493)
T ss_pred ChhhhhhcC
Confidence 355666666
No 242
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=65.99 E-value=59 Score=32.24 Aligned_cols=28 Identities=14% Similarity=0.289 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019163 223 LSAQVTMLQRDTTGLTAENKELKLRLQA 250 (345)
Q Consensus 223 Ls~ql~~Lqr~~~~L~sEN~eLK~RLQa 250 (345)
...++..+...+..|+.||..++.+...
T Consensus 242 fk~Emekm~Kk~kklEKE~~~~k~k~e~ 269 (309)
T PF09728_consen 242 FKKEMEKMSKKIKKLEKENQTWKSKWEK 269 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555433
No 243
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=65.46 E-value=31 Score=26.10 Aligned_cols=30 Identities=30% Similarity=0.513 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019163 222 TLSAQVTMLQRDTTGLTAENKELKLRLQAM 251 (345)
Q Consensus 222 ~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaL 251 (345)
.+..++..++.+...+..+|..|+.+++.+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444445555555555555444
No 244
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=65.41 E-value=1.1e+02 Score=28.24 Aligned_cols=54 Identities=11% Similarity=0.195 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLR 258 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~Lr 258 (345)
.++|=..+...|..-|+-|+.++......+..|..++..|...+..+..+...+
T Consensus 68 rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~k 121 (182)
T PF15035_consen 68 RLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQK 121 (182)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666677777777777777777777777777777666665554444
No 245
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=65.28 E-value=95 Score=36.62 Aligned_cols=84 Identities=20% Similarity=0.335 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019163 197 RSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIAT 276 (345)
Q Consensus 197 RSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~ 276 (345)
.+..+++.-|.+|+.++..+..|..+....+..+...-..|...-..+.+++..+.........-|++|.. +.+|+. .
T Consensus 535 ~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~a-l~r~ke-s 612 (1293)
T KOG0996|consen 535 ESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDA-LMRLKE-S 612 (1293)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHH-c
Confidence 34455555555666666666666666666665555555555555555556655555544444445666643 556655 3
Q ss_pred cCCCCC
Q 019163 277 GQIPAA 282 (345)
Q Consensus 277 geip~~ 282 (345)
|.||..
T Consensus 613 G~i~Gf 618 (1293)
T KOG0996|consen 613 GRIPGF 618 (1293)
T ss_pred CCCCcc
Confidence 555543
No 246
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=65.08 E-value=64 Score=39.67 Aligned_cols=68 Identities=29% Similarity=0.372 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLK 273 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk 273 (345)
+.+|-..+...+.-+..+.+++..+++++..|.+|+.+|+..+..++...+..+...+.+.++|+.+.
T Consensus 1641 ~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~ 1708 (1930)
T KOG0161|consen 1641 LKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELN 1708 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 33444444444444455555555555556666666666666666666555555444444445444443
No 247
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=64.89 E-value=1.7e+02 Score=34.29 Aligned_cols=46 Identities=22% Similarity=0.394 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
+.|.-++..|+.+...+..++..+...+..|..|+..|...+...+
T Consensus 818 e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~ 863 (1174)
T KOG0933|consen 818 ERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVE 863 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4455555555555555555555555555555555555555544443
No 248
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=64.76 E-value=6.7 Score=28.75 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019163 217 QTEATTLSAQVTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 217 q~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 248 (345)
-..|..|..+|..++.+...|..||..|+.++
T Consensus 13 aK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 13 AKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp -----------------HHHHHHHHHHHHHHH
T ss_pred HhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 33455566666666666666666666665443
No 249
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=64.68 E-value=31 Score=35.46 Aligned_cols=64 Identities=20% Similarity=0.220 Sum_probs=41.0
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 181 DPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 181 DpKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
.+|-.|=|.+| |+.--+| ..|--+|..|..+..++.++|++-.++|..+..|-..+|.-+..|.
T Consensus 125 eekykkaMvsn---aQLDNEK-----snl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq 188 (405)
T KOG2010|consen 125 EEKYKKAMVSN---AQLDNEK-----NNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQ 188 (405)
T ss_pred HHHHHHHHHHH---Hhhcccc-----cceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666 2221111 2455667778888888888888888888887777777766655554
No 250
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=64.45 E-value=19 Score=38.00 Aligned_cols=64 Identities=23% Similarity=0.343 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 019163 208 ELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLR---DALNEALREEVQRLK 273 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~Lr---dalNE~L~eEV~rLk 273 (345)
+|..+|..|+.+|..|..++..+.-.+..|..||+-|+ +...+-|++.- +.....|-++|+-|.
T Consensus 47 ~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~--~Asv~IQaraeqeeEfisntLlkkiqal~ 113 (552)
T KOG2129|consen 47 SLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLL--LASVEIQARAEQEEEFISNTLLKKIQALF 113 (552)
T ss_pred HHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhh--hhhhHHhhccchHHHHHHHHHHHHHHHhh
Confidence 44555667777777777777777777777777887763 34444443332 222223445565554
No 251
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=64.34 E-value=77 Score=36.32 Aligned_cols=48 Identities=25% Similarity=0.259 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
.|..|..++..|+.|...|...+..++.+...-+.|-.++..|+..++
T Consensus 107 QiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le 154 (1265)
T KOG0976|consen 107 QIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLE 154 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344444444444444444444444444444444444444444444443
No 252
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=64.32 E-value=1.2e+02 Score=35.54 Aligned_cols=38 Identities=29% Similarity=0.216 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019163 208 ELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELK 245 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK 245 (345)
+|...+..+..+...+..++.-+......+..+...++
T Consensus 892 el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (1311)
T TIGR00606 892 ELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELI 929 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333444443333
No 253
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=63.98 E-value=51 Score=32.26 Aligned_cols=40 Identities=40% Similarity=0.397 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019163 234 TTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATG 277 (345)
Q Consensus 234 ~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~g 277 (345)
+..+..||.+||.++..+++.. ...+.|++|-++||...+
T Consensus 68 ~~~~~~en~~Lk~~l~~~~~~~----~~~~~l~~EN~~Lr~lL~ 107 (284)
T COG1792 68 LKDLALENEELKKELAELEQLL----EEVESLEEENKRLKELLD 107 (284)
T ss_pred hHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhC
Confidence 3345666666666665555432 223456666666666554
No 254
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=63.94 E-value=39 Score=27.18 Aligned_cols=43 Identities=16% Similarity=0.373 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 216 LQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLR 258 (345)
Q Consensus 216 Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~Lr 258 (345)
...+...+..++..++++...|..||..|+.++..+....++.
T Consensus 33 ~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~rIe 75 (97)
T PF04999_consen 33 SRHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSSPSRIE 75 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 3445666777788888888888889998888777777544444
No 255
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=63.89 E-value=85 Score=33.12 Aligned_cols=45 Identities=20% Similarity=0.213 Sum_probs=22.6
Q ss_pred hccChHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 019163 178 ALIDPKRAKRILANRQSAARSKER-KIRYTSELERKVQTLQTEATT 222 (345)
Q Consensus 178 a~~DpKR~KRiLsNRESArRSReR-KkqyIeELE~KVq~Lq~EN~~ 222 (345)
+-+|+-++-|+|---.+|--.-++ --..|.+||..|..|.-....
T Consensus 290 vfi~e~~iDrlL~~L~~~dPtd~~~D~~~l~~le~~~~~mgPlid~ 335 (462)
T KOG2199|consen 290 VFIDEDKIDRLLQVLHEADPTDEVQDDDDLLDLEAAVHQMGPLIDR 335 (462)
T ss_pred eeccHHHHHHHHHHHhhcCCCCccCCCHHHHHHHHHHHHhhhHHHH
Confidence 456777777766554444332111 123455666665555444333
No 256
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=63.67 E-value=61 Score=30.66 Aligned_cols=29 Identities=34% Similarity=0.400 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019163 216 LQTEATTLSAQVTMLQRDTTGLTAENKEL 244 (345)
Q Consensus 216 Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eL 244 (345)
|..++..|.+++..|+..+..+++|-++|
T Consensus 84 ld~~i~~l~ek~q~l~~t~s~veaEik~L 112 (201)
T KOG4603|consen 84 LDGKIVALTEKVQSLQQTCSYVEAEIKEL 112 (201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444443
No 257
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=63.65 E-value=96 Score=26.66 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 237 LTAENKELKLRLQAMEQQAHLRDALNEALREEV 269 (345)
Q Consensus 237 L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV 269 (345)
|..|..+++.|+..|. ..|..|...|
T Consensus 103 le~e~~~~~~r~~dL~-------~QN~lLh~Ql 128 (132)
T PF07926_consen 103 LEKELSELEQRIEDLN-------EQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 4444444444444443 4455555443
No 258
>PF14645 Chibby: Chibby family
Probab=63.62 E-value=26 Score=30.23 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 209 LERKVQTLQTEATTLSAQVTMLQR 232 (345)
Q Consensus 209 LE~KVq~Lq~EN~~Ls~ql~~Lqr 232 (345)
|..+.+.|+.||+-|.-++..|--
T Consensus 76 l~~~n~~L~EENN~Lklk~elLlD 99 (116)
T PF14645_consen 76 LRKENQQLEEENNLLKLKIELLLD 99 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555554433
No 259
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=63.56 E-value=89 Score=31.81 Aligned_cols=23 Identities=22% Similarity=0.609 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 019163 255 AHLRDALNEALREEVQRLKIATGQ 278 (345)
Q Consensus 255 ~~LrdalNE~L~eEV~rLk~a~ge 278 (345)
.+++.|+. .|++||..|-+-+|-
T Consensus 331 v~IKqAl~-kLk~EI~qMdvrIGV 353 (359)
T PF10498_consen 331 VKIKQALT-KLKQEIKQMDVRIGV 353 (359)
T ss_pred HHHHHHHH-HHHHHHHHhhhhhhe
Confidence 34554444 366777766666553
No 260
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=63.51 E-value=1.3e+02 Score=28.04 Aligned_cols=52 Identities=19% Similarity=0.298 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019163 200 ERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAM 251 (345)
Q Consensus 200 eRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaL 251 (345)
.+-+.-+..+..++..++.+...|.-+...|...+..|..|..+|..+....
T Consensus 82 ~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~ 133 (201)
T PF13851_consen 82 EKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESA 133 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666666666666666666666666666666554333
No 261
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=63.44 E-value=1.2e+02 Score=28.99 Aligned_cols=95 Identities=16% Similarity=0.197 Sum_probs=0.0
Q ss_pred cccchhhccCChhHHHHhhccChHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-----------
Q 019163 160 ILGDGVKKAVDRDRLAELALIDPKRAKRILANRQSAARSKERKIRYTSE---LERKVQTLQTEATTLSA----------- 225 (345)
Q Consensus 160 ~~~~e~kkim~~e~laEla~~DpKR~KRiLsNRESArRSReRKkqyIeE---LE~KVq~Lq~EN~~Ls~----------- 225 (345)
++++|+.+.-..+-+.-|-..+-.|.+=|+--.--.+---.|=+.|+.| |..-.+.|+.+|.+|+.
T Consensus 8 ~sDeell~~skeel~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqK 87 (195)
T PF10226_consen 8 VSDEELLRWSKEELVRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQK 87 (195)
T ss_pred CCHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHH
Q ss_pred ----------------------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019163 226 ----------------------------QVTMLQRDTTGLTAENKELKLRLQAMEQQ 254 (345)
Q Consensus 226 ----------------------------ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq 254 (345)
+|..|+.....|..||.+||.-.-.|..+
T Consensus 88 grklarEWQrFGryta~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElcl~LDee 144 (195)
T PF10226_consen 88 GRKLAREWQRFGRYTASVMRQEVAQYQQKLKELEDKQEELIRENLELKELCLYLDEE 144 (195)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcc
No 262
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=63.33 E-value=1.2e+02 Score=27.62 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019163 214 QTLQTEATTLSAQVTMLQRDTTGLTAENKEL 244 (345)
Q Consensus 214 q~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eL 244 (345)
..+..++..|..++..|+.++..|....+.+
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~ 115 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKNL 115 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3455556666666665555555555443333
No 263
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=63.26 E-value=85 Score=34.75 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 019163 202 KIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLT 238 (345)
Q Consensus 202 KkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~ 238 (345)
..+-+.+|+.+.+.|+.....|.++++.+......|+
T Consensus 577 Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~ 613 (717)
T PF10168_consen 577 QLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLM 613 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555544444433333
No 264
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=63.18 E-value=85 Score=30.98 Aligned_cols=8 Identities=0% Similarity=0.463 Sum_probs=3.4
Q ss_pred cCCccccC
Q 019163 41 FDDFLLFD 48 (345)
Q Consensus 41 ~~dd~~~d 48 (345)
+|.-|+++
T Consensus 5 ypr~iSme 12 (267)
T PF10234_consen 5 YPRLISME 12 (267)
T ss_pred CCCCCcHH
Confidence 44444443
No 265
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=62.93 E-value=73 Score=28.71 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 219 EATTLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 219 EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
++..+..+++.++++....+.|...||.++..++
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444555555555544443
No 266
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=62.87 E-value=42 Score=29.41 Aligned_cols=41 Identities=27% Similarity=0.340 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019163 208 ELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 248 (345)
++=.+|..|+.....|.+++..|.+....|..||..|++..
T Consensus 5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lEN 45 (114)
T COG4467 5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLEN 45 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhH
Confidence 45567788888889999999999999999999999874433
No 267
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=62.70 E-value=35 Score=37.47 Aligned_cols=60 Identities=25% Similarity=0.371 Sum_probs=43.1
Q ss_pred cChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019163 180 IDPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQA 255 (345)
Q Consensus 180 ~DpKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~ 255 (345)
+|-|-+--|.+| +|..+|..|.-|+.-|+.++...++....|+..+++|...|..+.+++
T Consensus 314 LetKNALNiVKN----------------DLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea 373 (832)
T KOG2077|consen 314 LETKNALNIVKN----------------DLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEA 373 (832)
T ss_pred HhhhhHHHHHHH----------------HHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345777777777 777888888888888887777777777777777777766666555543
No 268
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=62.62 E-value=36 Score=27.96 Aligned_cols=37 Identities=32% Similarity=0.340 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019163 208 ELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKEL 244 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eL 244 (345)
+|-.++..-+.|+..|..-+..|+........-|..|
T Consensus 9 ~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkL 45 (76)
T PF11544_consen 9 ELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKL 45 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444443
No 269
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=62.57 E-value=1.2e+02 Score=27.29 Aligned_cols=32 Identities=19% Similarity=0.347 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhH
Q 019163 204 RYTSELERKVQTLQT---EATTLSAQVTMLQRDTT 235 (345)
Q Consensus 204 qyIeELE~KVq~Lq~---EN~~Ls~ql~~Lqr~~~ 235 (345)
.-|.+....+..|+. .|..|..+|..|+..+.
T Consensus 34 ~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 34 TQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 334444444444444 45555555555555543
No 270
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=62.56 E-value=2.1e+02 Score=33.57 Aligned_cols=44 Identities=14% Similarity=0.170 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQ 249 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQ 249 (345)
..+|+.++..|..++..+...+..+..+...|..+-..+..+..
T Consensus 883 r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1311)
T TIGR00606 883 RQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKE 926 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 34444444444455555555444444444444444444444433
No 271
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=62.30 E-value=2.1e+02 Score=33.22 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 203 IRYTSELERKVQTLQTEATTLSAQVTM 229 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~Ls~ql~~ 229 (345)
.+....++.++..|+.+...+..++..
T Consensus 677 ~~~~~~~~~~l~~l~~~l~~~~~e~~~ 703 (1201)
T PF12128_consen 677 EERKEQIEEQLNELEEELKQLKQELEE 703 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 272
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=62.20 E-value=1.7e+02 Score=29.14 Aligned_cols=42 Identities=17% Similarity=0.276 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 248 (345)
+.|+..+..|+.+...|...++.+..-...|.....+|+.++
T Consensus 147 ~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~ 188 (312)
T smart00787 147 EGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEEL 188 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555444444444444444433
No 273
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=62.09 E-value=47 Score=31.09 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019163 223 LSAQVTMLQRDTTGLTAENKELKLRLQAMEQQ 254 (345)
Q Consensus 223 Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq 254 (345)
...+|..|++.+..+...|-++..-+..||++
T Consensus 173 ~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~e 204 (221)
T PF05700_consen 173 AGEELRYLEQRWKELVSKNLEIEVACEELEQE 204 (221)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466677777777777777776666666643
No 274
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=61.92 E-value=18 Score=31.79 Aligned_cols=28 Identities=32% Similarity=0.414 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019163 218 TEATTLSAQVTMLQRDTTGLTAENKELK 245 (345)
Q Consensus 218 ~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK 245 (345)
.|...|+.+|..|..++..|+.||.-||
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666677777777777887774
No 275
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=61.78 E-value=90 Score=29.57 Aligned_cols=50 Identities=22% Similarity=0.339 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQ 254 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq 254 (345)
.+..||..+..|..+...|..++.........+...-..+..+.+.|+..
T Consensus 46 ~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~ 95 (264)
T PF06008_consen 46 QLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQF 95 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666667777777777766666666666665555555565555543
No 276
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=61.76 E-value=1e+02 Score=32.99 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKEL 244 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eL 244 (345)
.+++||.++..++.+...+..++..++.+...+..+-.+|
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l 249 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESL 249 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555554444444444444433
No 277
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=61.60 E-value=37 Score=28.64 Aligned_cols=33 Identities=15% Similarity=0.108 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 200 ERKIRYTSELERKVQTLQTEATTLSAQVTMLQR 232 (345)
Q Consensus 200 eRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr 232 (345)
...++.+.+++.+++.|+.+|..|..++..|+.
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 334445556666666666666666666555443
No 278
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=61.45 E-value=1.4e+02 Score=27.66 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 194 SAARSKERKIRYTSELERKVQTLQTEATTL 223 (345)
Q Consensus 194 SArRSReRKkqyIeELE~KVq~Lq~EN~~L 223 (345)
.+-.-|.++..++..++..+..+.....+|
T Consensus 105 ~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl 134 (216)
T cd07627 105 AAFAQRQKLWQYWQSAESELSKKKAQLEKL 134 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666666666666666665555555
No 279
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=61.30 E-value=66 Score=34.34 Aligned_cols=58 Identities=19% Similarity=0.357 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcC
Q 019163 218 TEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLR----DALNEALREEVQRLKIATGQ 278 (345)
Q Consensus 218 ~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~Lr----dalNE~L~eEV~rLk~a~ge 278 (345)
.+...|..++...+.+...+..|.-.|..++. ...+|+ ...|+..++|++.||+++.+
T Consensus 259 qsl~dlQk~Lekar~e~rnvavek~~lerkl~---ea~rl~elreg~e~e~~rkelE~lR~~L~k 320 (575)
T KOG4403|consen 259 QSLEDLQKRLEKAREEQRNVAVEKLDLERKLD---EAPRLSELREGVENETSRKELEQLRVALEK 320 (575)
T ss_pred HHHHHHHHHHHHHHHhhhchhhhhhhHHHHHh---hhhhhhhhhcchhHHHHHHHHHHHHHHHHH
Confidence 33444555555555555556666666655443 222333 24667777888888887653
No 280
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.05 E-value=71 Score=32.91 Aligned_cols=46 Identities=26% Similarity=0.271 Sum_probs=18.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 019163 190 ANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGL 237 (345)
Q Consensus 190 sNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L 237 (345)
-+|..|-.+-.|+.. ++|-.-.+.|+.+..+|..++..|+..+.-|
T Consensus 227 me~~~aeq~slkRt~--EeL~~G~~kL~~~~etLEqq~~~L~~niDIL 272 (365)
T KOG2391|consen 227 MERLQAEQESLKRTE--EELNIGKQKLVAMKETLEQQLQSLQKNIDIL 272 (365)
T ss_pred HHHHHHHHHHHHhhH--HHHHhhHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 344444443333322 3333333444444444444444444433333
No 281
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=61.04 E-value=1.2e+02 Score=31.61 Aligned_cols=8 Identities=13% Similarity=0.476 Sum_probs=4.3
Q ss_pred CCCCCCCC
Q 019163 289 RGLPPQFP 296 (345)
Q Consensus 289 ~~~q~~~~ 296 (345)
-+|.+.|-
T Consensus 205 a~W~P~Yd 212 (525)
T TIGR02231 205 ASWTPSYD 212 (525)
T ss_pred CcEeeeeE
Confidence 34655554
No 282
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=61.01 E-value=28 Score=27.72 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTM 229 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~ 229 (345)
..|+.++..++.+...|..++..
T Consensus 65 ~~L~~~~~~~~~~i~~l~~~~~~ 87 (106)
T PF01920_consen 65 EELEERIEKLEKEIKKLEKQLKY 87 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333333
No 283
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=60.90 E-value=1.2e+02 Score=26.64 Aligned_cols=81 Identities=17% Similarity=0.277 Sum_probs=45.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019163 183 KRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSA-------QVTMLQRDTTGLTAENKELKLRLQAMEQQA 255 (345)
Q Consensus 183 KR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~-------ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~ 255 (345)
+-..+++.--..+-.-|.++..+++.++..+.....+...|.. ++..++.+...++.+-..++.+...
T Consensus 96 ~~y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~----- 170 (218)
T cd07596 96 KEYLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEE----- 170 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 3344555555555666677777777777777777776666643 4555555555555444444433333
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019163 256 HLRDALNEALREEVQRLK 273 (345)
Q Consensus 256 ~LrdalNE~L~eEV~rLk 273 (345)
.++.++.|+.++.
T Consensus 171 -----i~~~~~~El~~f~ 183 (218)
T cd07596 171 -----ISERLKEELKRFH 183 (218)
T ss_pred -----HHHHHHHHHHHHH
Confidence 3444555555553
No 284
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=60.71 E-value=2e+02 Score=29.24 Aligned_cols=16 Identities=38% Similarity=0.623 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 019163 208 ELERKVQTLQTEATTL 223 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~L 223 (345)
.|.+++..|+.|-..|
T Consensus 110 ~L~rkl~qLr~EK~~l 125 (310)
T PF09755_consen 110 DLSRKLNQLRQEKVEL 125 (310)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 285
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=60.53 E-value=1.1e+02 Score=26.16 Aligned_cols=66 Identities=18% Similarity=0.163 Sum_probs=36.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019163 183 KRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQ 254 (345)
Q Consensus 183 KR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq 254 (345)
.+.+|++-.+..+-..---.- -.-...+-.....+..+++.++.++..|..+|..|+.++..|+..
T Consensus 21 ~~~~~~l~~~l~~~l~~f~~~------~~~g~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 21 VRRRRILTLVLLALLALFQYL------AWFGKNGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 455556666555554432222 222222333445555566666666777777777777777777655
No 286
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=60.47 E-value=1.4e+02 Score=27.32 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=34.8
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 182 PKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQ 226 (345)
Q Consensus 182 pKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~q 226 (345)
++|..+|..+-..|.+.|..=.....+.|..+..-..|...+..+
T Consensus 40 e~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e 84 (155)
T PRK06569 40 NNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKE 84 (155)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377788888888888888887777777777777777777777655
No 287
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=60.41 E-value=49 Score=35.98 Aligned_cols=63 Identities=27% Similarity=0.225 Sum_probs=42.8
Q ss_pred cChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019163 180 IDPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 180 ~DpKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEq 253 (345)
+|+|-.||-. |+=|-+--.++-++.+. .-...|..+|..|..++..|..||-.||.||..++.
T Consensus 275 ~d~kv~krqQ---------RmIKNResA~~SRkKKK--Ey~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 275 SDIKVLKRQQ---------RMIKNRESACQSRKKKK--EYMLGLEARLQALLSENEQLKKENATLKRQLDELVS 337 (655)
T ss_pred cCHHHHHHHH---------HHHhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 5888888731 34443333444433221 112457888899999999999999999999988884
No 288
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=60.37 E-value=1.2e+02 Score=34.04 Aligned_cols=40 Identities=28% Similarity=0.386 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 213 VQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 213 Vq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
+..|+.....|+.++.........|..+|+.||.++.+--
T Consensus 589 ~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~ 628 (786)
T PF05483_consen 589 MKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAES 628 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555556666666665554433
No 289
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=60.35 E-value=1.1e+02 Score=28.70 Aligned_cols=70 Identities=19% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHH-HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 192 RQSAARSKER-KIR-------YTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDAL 261 (345)
Q Consensus 192 RESArRSReR-Kkq-------yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~Lrdal 261 (345)
...|.+.... |+. =+..|-.-...+..||..|...+..+.+++..|...+..|..+-+.|.++....++|
T Consensus 129 ~~l~e~a~~el~~k~~ale~~A~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~eq~~~e~L 206 (206)
T PF14988_consen 129 LQLGERAHKELKKKAQALELAAKKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQEQWYLESL 206 (206)
T ss_pred HHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 290
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=60.25 E-value=35 Score=26.40 Aligned_cols=29 Identities=17% Similarity=0.378 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDT 234 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~ 234 (345)
+..|+..+..++.||..|+..+..+++..
T Consensus 9 ~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 9 LPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777888888888877777666554
No 291
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=60.15 E-value=64 Score=25.11 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 209 LERKVQTLQTEATTLSAQVTMLQRD 233 (345)
Q Consensus 209 LE~KVq~Lq~EN~~Ls~ql~~Lqr~ 233 (345)
||.++..|+....-+...|..|...
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~ 26 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDV 26 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666766666666555555554443
No 292
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=60.03 E-value=1.2e+02 Score=26.66 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 204 RYTSELERKVQTLQTEATTLSAQV 227 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql 227 (345)
.+...|+.....|+.++..|....
T Consensus 27 ~~~~~l~~~~~~l~~e~~~l~~~~ 50 (136)
T PF04871_consen 27 QAESSLEQENKRLEAEEKELKEAE 50 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555433
No 293
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=59.95 E-value=1.8e+02 Score=31.98 Aligned_cols=55 Identities=13% Similarity=0.205 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019163 193 QSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLR 247 (345)
Q Consensus 193 ESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~R 247 (345)
+.+.+-|..=++-|+.|..++..|..+...+..++..-+.....+..+-..++.+
T Consensus 75 e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k 129 (632)
T PF14817_consen 75 ENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHK 129 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444556677777777777777777776666655555555555555444
No 294
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=59.90 E-value=29 Score=30.82 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019163 208 ELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKEL 244 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eL 244 (345)
..|..++.|+.|...=-.+|..|.++...+...|..|
T Consensus 91 ~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~L 127 (131)
T PF04859_consen 91 TYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSL 127 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444444444444444444444444
No 295
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=59.84 E-value=29 Score=25.53 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=12.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 228 TMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 228 ~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
..|+.....|..+|..|+.++..|+
T Consensus 28 ~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 28 EELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444445555555554444444
No 296
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=59.79 E-value=55 Score=31.78 Aligned_cols=63 Identities=17% Similarity=0.247 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019163 203 IRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATGQI 279 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~gei 279 (345)
.+|.+-.++....++..-.+=+.+...+..+...|+.||..|+.+ .+.|+.|+..|+....+.
T Consensus 193 ~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~--------------v~~l~~el~~~~~~~~~~ 255 (269)
T KOG3119|consen 193 PEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQ--------------VEQLKKELATLRRLFLQL 255 (269)
T ss_pred HHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhh
Confidence 344444444444433333333333333334444455555554333 344445555555554443
No 297
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=59.34 E-value=1.4e+02 Score=30.29 Aligned_cols=62 Identities=19% Similarity=0.212 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019163 193 QSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQ 254 (345)
Q Consensus 193 ESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq 254 (345)
++++|-..-.+..+.++|...+.-+........+-..++.+...|.+||--|+++|......
T Consensus 182 E~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K 243 (305)
T PF14915_consen 182 ESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNK 243 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566555566666666666555555555555555555666666666666665555444333
No 298
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=58.96 E-value=51 Score=37.18 Aligned_cols=61 Identities=25% Similarity=0.324 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 213 VQTLQTEATTLSAQVTMLQRDTTG-------------------LTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLK 273 (345)
Q Consensus 213 Vq~Lq~EN~~Ls~ql~~Lqr~~~~-------------------L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk 273 (345)
++-|+.||..|+++|..|.+++.+ |..-|..|..+|+.......+....||.|.+.|+.+|
T Consensus 389 ~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~ 468 (861)
T PF15254_consen 389 MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQK 468 (861)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH
No 299
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=58.83 E-value=1.3e+02 Score=27.34 Aligned_cols=77 Identities=14% Similarity=0.240 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 196 ARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIA 275 (345)
Q Consensus 196 rRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a 275 (345)
...++.=++.|..|...+..-+.+...+...|..++.. |....+.|+.....+..-..=..+.-+.|+.||..++..
T Consensus 102 ~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~---l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~ 178 (184)
T PF05791_consen 102 QKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDK---LQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEE 178 (184)
T ss_dssp HT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGG
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 34455555667777777777777777777666665553 555555555555444433222223444566666665543
No 300
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=58.39 E-value=2.2e+02 Score=32.80 Aligned_cols=36 Identities=22% Similarity=0.222 Sum_probs=20.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 187 RILANRQSAARSKERKIRYTSELERKVQTLQTEATT 222 (345)
Q Consensus 187 RiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~ 222 (345)
-+.+--++|..+.....+-..+|..++..++.+...
T Consensus 449 di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~ 484 (980)
T KOG0980|consen 449 DIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGR 484 (980)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666666666666666555554444
No 301
>PRK04863 mukB cell division protein MukB; Provisional
Probab=58.25 E-value=2.9e+02 Score=33.40 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019163 202 KIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 202 KkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEq 253 (345)
.+..+.+++.++..++.+...|..++..++.....+..+...+...++.++.
T Consensus 374 leeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~ 425 (1486)
T PRK04863 374 ADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALER 425 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555555555444444444443
No 302
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=58.12 E-value=94 Score=29.65 Aligned_cols=47 Identities=19% Similarity=0.214 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019163 202 KIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 202 KkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 248 (345)
++-|+.+|+..++.......+|...+.....-....+..+.+|+..+
T Consensus 79 ~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kkl 125 (203)
T KOG3433|consen 79 RKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKL 125 (203)
T ss_pred HHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 34455566666666665555555555544444444444444444443
No 303
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=57.90 E-value=1.1e+02 Score=25.35 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019163 247 RLQAMEQQAHLRDALNEALR 266 (345)
Q Consensus 247 RLQaLEqq~~LrdalNE~L~ 266 (345)
++..||..+.--|.....|+
T Consensus 74 ~V~~LE~~v~~LD~ysk~LE 93 (99)
T PF10046_consen 74 QVTELEQTVYELDEYSKELE 93 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555554444444444443
No 304
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=57.89 E-value=1.1e+02 Score=26.36 Aligned_cols=46 Identities=24% Similarity=0.283 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
.-|..-|-.-+..+..|..+|..-+..+..+..|+.-|..|-+-|+
T Consensus 15 ~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~ 60 (102)
T PF10205_consen 15 QVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLT 60 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555566666666666666666666666666666665555
No 305
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=57.80 E-value=1.7e+02 Score=29.51 Aligned_cols=94 Identities=24% Similarity=0.376 Sum_probs=53.4
Q ss_pred hccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HH
Q 019163 178 ALIDPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQ-AH 256 (345)
Q Consensus 178 a~~DpKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq-~~ 256 (345)
..+|+--.|+. -=+.+.-+-+.++ .+|..++..+..+...|..++..+......+..+-.+|-.+++.+... ..
T Consensus 6 ~~~~E~e~K~~-~lk~~~~e~~ekR----~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~e 80 (294)
T COG1340 6 DKLDELELKRK-QLKEEIEELKEKR----DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDE 80 (294)
T ss_pred HhhhHHHHHHH-HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443 2244444444444 677777777777777777777777777777777777776666655432 11
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 019163 257 LRDALNEALREEVQRLKIATG 277 (345)
Q Consensus 257 LrdalNE~L~eEV~rLk~a~g 277 (345)
+...+++ |..++..|+-...
T Consensus 81 in~kl~e-L~~~~~~l~e~~~ 100 (294)
T COG1340 81 INAKLQE-LRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHH-HHHHHHHHHHHhh
Confidence 2212222 4455555554443
No 306
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.56 E-value=1.7e+02 Score=29.03 Aligned_cols=46 Identities=15% Similarity=0.394 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019163 208 ELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEq 253 (345)
+++.+|..|..+..++..++..++.+...+..+-+.|+..|..++.
T Consensus 49 ~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~ 94 (265)
T COG3883 49 NIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE 94 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555555555554
No 307
>PRK01156 chromosome segregation protein; Provisional
Probab=57.56 E-value=3e+02 Score=30.42 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhcCC
Q 019163 265 LREEVQRLKIATGQI 279 (345)
Q Consensus 265 L~eEV~rLk~a~gei 279 (345)
|+.++..|+.+.+++
T Consensus 435 l~~~~~el~~~~~~l 449 (895)
T PRK01156 435 LRENLDELSRNMEML 449 (895)
T ss_pred HHHHHHHHHHHHHhh
Confidence 444555666555543
No 308
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=57.24 E-value=1.9e+02 Score=32.26 Aligned_cols=7 Identities=14% Similarity=-0.230 Sum_probs=2.5
Q ss_pred HhhccCh
Q 019163 176 ELALIDP 182 (345)
Q Consensus 176 Ela~~Dp 182 (345)
+.+-+++
T Consensus 490 ~~~Glp~ 496 (771)
T TIGR01069 490 QRYGIPH 496 (771)
T ss_pred HHhCcCH
Confidence 3333333
No 309
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=56.99 E-value=33 Score=35.78 Aligned_cols=20 Identities=35% Similarity=0.630 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019163 236 GLTAENKELKLRLQAMEQQA 255 (345)
Q Consensus 236 ~L~sEN~eLK~RLQaLEqq~ 255 (345)
.|+..|++|.+|++.|+.++
T Consensus 301 ~le~~n~~L~~rieeLk~~~ 320 (411)
T KOG1318|consen 301 KLESTNQELALRIEELKSEA 320 (411)
T ss_pred HHHhHHHHHHHHHHHHHHHH
Confidence 34455555555555555443
No 310
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=56.97 E-value=68 Score=38.05 Aligned_cols=58 Identities=22% Similarity=0.319 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNE 263 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE 263 (345)
.+.++|.++...+.++..-...|+.|+++...|..--++|+.++..+....-+- |+|.
T Consensus 1247 ~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~sdi~G-A~~~ 1304 (1758)
T KOG0994|consen 1247 DLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIKESDILG-AFNS 1304 (1758)
T ss_pred hhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchh-HHHH
Confidence 334444444444444444446677777777777777778877777666433222 4444
No 311
>smart00340 HALZ homeobox associated leucin zipper.
Probab=56.95 E-value=24 Score=26.24 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=16.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Q 019163 226 QVTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 226 ql~~Lqr~~~~L~sEN~eLK~RL 248 (345)
.++.|.+.+..|..||+.|+..+
T Consensus 6 dCe~LKrcce~LteeNrRL~ke~ 28 (44)
T smart00340 6 DCELLKRCCESLTEENRRLQKEV 28 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888764333
No 312
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=56.88 E-value=1.7e+02 Score=30.75 Aligned_cols=67 Identities=33% Similarity=0.452 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 019163 209 LERKVQTLQTEATTLSAQVTMLQR----DTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATGQIPAA 282 (345)
Q Consensus 209 LE~KVq~Lq~EN~~Ls~ql~~Lqr----~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~geip~~ 282 (345)
|..+++.|+.+.+.++.+|..... ....|..|-+.|+.++..++.+ -+.+.+|++.+-..++-||..
T Consensus 41 ~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~-------~~~~~~~l~~~ll~ipNi~~~ 111 (429)
T COG0172 41 LLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAA-------LDELEAELDTLLLTIPNIPHE 111 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHH-------HHHHHHHHHHHHHhCCCCCcc
Confidence 444555566666666666652211 2345677777777777666642 234556677776777766553
No 313
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=56.85 E-value=53 Score=28.90 Aligned_cols=36 Identities=33% Similarity=0.301 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019163 199 KERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDT 234 (345)
Q Consensus 199 ReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~ 234 (345)
+..|-.-+++|+.++..|+.+..+|..+-..++.++
T Consensus 65 k~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l 100 (119)
T COG1382 65 KVSKEEAVDELEERKETLELRIKTLEKQEEKLQERL 100 (119)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666555555444433
No 314
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=56.79 E-value=92 Score=28.78 Aligned_cols=47 Identities=23% Similarity=0.266 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQA 255 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~ 255 (345)
=|+=.|+++..|+.+|..|..+++.|-. ...+|..+-.++..++...
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li~----~Ar~Ne~~~~~~~~l~l~L 87 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELIE----NARENEAIFQRLHRLVLAL 87 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 4677888899999999999999887554 5678888877887777653
No 315
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=56.76 E-value=1.2e+02 Score=32.43 Aligned_cols=12 Identities=17% Similarity=0.213 Sum_probs=5.8
Q ss_pred HHHHHHHHHHhc
Q 019163 266 REEVQRLKIATG 277 (345)
Q Consensus 266 ~eEV~rLk~a~g 277 (345)
.++|+.|.-.+.
T Consensus 434 d~~I~dLqEQlr 445 (493)
T KOG0804|consen 434 DEKITDLQEQLR 445 (493)
T ss_pred HHHHHHHHHHHH
Confidence 355555554443
No 316
>PRK14160 heat shock protein GrpE; Provisional
Probab=56.57 E-value=1.2e+02 Score=28.96 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019163 208 ELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 248 (345)
.|+.++..|+.++..|..++..+...+..+.++...++.|.
T Consensus 58 ~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~ 98 (211)
T PRK14160 58 ELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRT 98 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555555555554
No 317
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=56.51 E-value=62 Score=32.44 Aligned_cols=48 Identities=21% Similarity=0.290 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
||=.||.+++....|...|..|+..|+.....+...-.+.|..|+.|.
T Consensus 65 ~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglr 112 (389)
T PF06216_consen 65 YIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLR 112 (389)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444556666666666666666666655555555544444444444443
No 318
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=56.46 E-value=1.7e+02 Score=27.70 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019163 204 RYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEq 253 (345)
..+..|+..+..|..+..........+......+...=..|...++.+..
T Consensus 52 ~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~ 101 (264)
T PF06008_consen 52 KELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQD 101 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788888888888888888888888888777777777777777776664
No 319
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=56.43 E-value=13 Score=27.24 Aligned_cols=42 Identities=33% Similarity=0.328 Sum_probs=10.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 185 AKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQV 227 (345)
Q Consensus 185 ~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql 227 (345)
.|+...|++=|+..-.... .|.+||.++..|..||-.|+.++
T Consensus 3 ~k~~~qn~~laK~Ns~l~~-ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 3 EKYSRQNRELAKRNSALSI-KIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------------------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHhHHHHh-HHHHHHhHHHHHHHHHHHHHHHh
Confidence 3445556655555444433 36677777777777777776654
No 320
>PF14645 Chibby: Chibby family
Probab=56.14 E-value=39 Score=29.22 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019163 208 ELERKVQTLQTEATTLSAQVT 228 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~ql~ 228 (345)
.|+.+.+.|.-++.-|..-++
T Consensus 82 ~L~EENN~Lklk~elLlDMLt 102 (116)
T PF14645_consen 82 QLEEENNLLKLKIELLLDMLT 102 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333
No 321
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=56.06 E-value=1.8e+02 Score=31.79 Aligned_cols=29 Identities=14% Similarity=0.256 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019163 223 LSAQVTMLQRDTTGLTAENKELKLRLQAM 251 (345)
Q Consensus 223 Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaL 251 (345)
+...+..+..++...+.|+..|+.....|
T Consensus 292 ~~~~l~~l~~Eie~kEeE~e~lq~~~d~L 320 (581)
T KOG0995|consen 292 MEKKLEMLKSEIEEKEEEIEKLQKENDEL 320 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444443333333
No 322
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=56.06 E-value=45 Score=35.42 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=16.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019163 227 VTMLQRDTTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 227 l~~Lqr~~~~L~sEN~eLK~RLQaLEq 253 (345)
|..|+.++....+||++|+.+++.||.
T Consensus 274 id~LE~rv~~~taeNqeL~kkV~~Le~ 300 (472)
T KOG0709|consen 274 IDGLESRVSAFTAENQELQKKVEELEL 300 (472)
T ss_pred HHHHhhhhhhcccCcHHHHHHHHHHhh
Confidence 444555555566666666666666664
No 323
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=55.89 E-value=1.5e+02 Score=33.12 Aligned_cols=7 Identities=0% Similarity=-0.088 Sum_probs=3.2
Q ss_pred CCccccC
Q 019163 42 DDFLLFD 48 (345)
Q Consensus 42 ~dd~~~d 48 (345)
|-|+.++
T Consensus 318 pndi~l~ 324 (782)
T PRK00409 318 PKDISLG 324 (782)
T ss_pred CceeEEC
Confidence 4444443
No 324
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=55.72 E-value=63 Score=28.26 Aligned_cols=13 Identities=38% Similarity=0.516 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHH
Q 019163 200 ERKIRYTSELERK 212 (345)
Q Consensus 200 eRKkqyIeELE~K 212 (345)
+++++|+.+|+..
T Consensus 77 E~~~~~i~~~~~~ 89 (139)
T PF13935_consen 77 ERAQQRIAELEQE 89 (139)
T ss_pred HHHHHHHHHHHHH
Confidence 3366777777765
No 325
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=55.65 E-value=66 Score=30.92 Aligned_cols=46 Identities=24% Similarity=0.248 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
..||+.++.-......|..+|..|+.+...|.-++.++.-+|+.+.
T Consensus 43 ~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~ 88 (263)
T PRK10803 43 TQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVV 88 (263)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3455555444444455666666666666666666666655555444
No 326
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=55.44 E-value=51 Score=24.88 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 202 KIRYTSELERKVQTLQTEATTLSAQVTML 230 (345)
Q Consensus 202 KkqyIeELE~KVq~Lq~EN~~Ls~ql~~L 230 (345)
..+.+.+|+.+++.|+.+|..|..++..|
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445666666666666666666666554
No 327
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=55.29 E-value=61 Score=27.52 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 019163 260 ALNEALREEVQRLKIATGQI 279 (345)
Q Consensus 260 alNE~L~eEV~rLk~a~gei 279 (345)
..|+.|+.|++++|...|..
T Consensus 29 ~eN~~l~~EL~kyk~~~g~~ 48 (96)
T PF11365_consen 29 DENKQLTEELNKYKSKYGDL 48 (96)
T ss_pred HHHHHHHHHHHHHHHhcCCC
Confidence 45667777888888877754
No 328
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.27 E-value=2e+02 Score=32.95 Aligned_cols=50 Identities=20% Similarity=0.165 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019163 200 ERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQ 249 (345)
Q Consensus 200 eRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQ 249 (345)
.+-.--++.|..++.+|+.||..|.+++.........|..++.-||.++-
T Consensus 667 ~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 667 RELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33334455666666666666666666666666666666666666665553
No 329
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=54.86 E-value=72 Score=24.81 Aligned_cols=45 Identities=13% Similarity=0.331 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 208 ELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
+++.++..++.....+...+..+++....++.+-..+..+|..++
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~ 47 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIK 47 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555554444444344434444443
No 330
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=54.71 E-value=77 Score=35.05 Aligned_cols=46 Identities=26% Similarity=0.246 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019163 204 RYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQ 249 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQ 249 (345)
.-+-|||.|-+.|+.|..++..+++++++....-..|-..||..++
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ie 138 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIE 138 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHH
Confidence 3467899999999999999999999988876655555555555443
No 331
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=54.53 E-value=1.2e+02 Score=25.06 Aligned_cols=16 Identities=44% Similarity=0.551 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 019163 237 LTAENKELKLRLQAME 252 (345)
Q Consensus 237 L~sEN~eLK~RLQaLE 252 (345)
|..+...|+..+..++
T Consensus 86 l~~~l~~l~~~~~k~e 101 (126)
T PF13863_consen 86 LKAELEELKSEISKLE 101 (126)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 332
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=54.43 E-value=99 Score=30.65 Aligned_cols=60 Identities=20% Similarity=0.361 Sum_probs=29.3
Q ss_pred HHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 188 ILANRQSAAR-SKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 188 iLsNRESArR-SReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
-|+|||.+-. +|.||..-.+++ ..|+...- -..+|..|+++...+++||-+...+|..+.
T Consensus 132 ~IR~~E~sl~p~R~~r~~l~d~I----~kLk~k~P-~s~kl~~LeqELvraEae~lvaEAqL~n~k 192 (271)
T PF13805_consen 132 SIRNREESLQPSRDRRRKLQDEI----AKLKYKDP-QSPKLVVLEQELVRAEAENLVAEAQLSNIK 192 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-T-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHhHHHHHHH----HHHHhcCC-CChHHHHHHHHHHHHHHHhhHHHHHHHHhh
Confidence 4567776544 444444333332 22322211 134556666666666666666555554444
No 333
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=54.39 E-value=41 Score=32.90 Aligned_cols=42 Identities=24% Similarity=0.315 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019163 200 ERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELK 245 (345)
Q Consensus 200 eRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK 245 (345)
.-+..+..+|..+.+.|..++.++..... +...|+.||+.||
T Consensus 62 ~~~~~~~~~~~~en~~Lk~~l~~~~~~~~----~~~~l~~EN~~Lr 103 (284)
T COG1792 62 LEFLKSLKDLALENEELKKELAELEQLLE----EVESLEEENKRLK 103 (284)
T ss_pred HHHHHHhHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 33444555566655555555555444333 3455777777764
No 334
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=54.15 E-value=22 Score=36.51 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019163 212 KVQTLQTEATTLSAQVTMLQRDTTGLTAENKEL 244 (345)
Q Consensus 212 KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eL 244 (345)
+...|+.||..|+++++.|..+.+.| ||..|
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerL--E~e~l 63 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERL--ENEML 63 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHH--HHHhh
Confidence 34456777777777777777766666 44444
No 335
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=54.05 E-value=1.7e+02 Score=26.44 Aligned_cols=77 Identities=17% Similarity=0.279 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 194 SAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLK 273 (345)
Q Consensus 194 SArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk 273 (345)
.+-.-|.++..++..++..+...+.+...|...-..-......+..|-.+++.++..++... +..++.++.|+.|+.
T Consensus 125 ~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~---~~is~~~k~E~~rf~ 201 (236)
T PF09325_consen 125 EALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEF---EEISENIKKELERFE 201 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 33344555555555555555555555544444322222333444444445544444444321 133455666666654
No 336
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=53.90 E-value=37 Score=35.70 Aligned_cols=15 Identities=20% Similarity=0.503 Sum_probs=9.6
Q ss_pred HhhccChHHHHHHHH
Q 019163 176 ELALIDPKRAKRILA 190 (345)
Q Consensus 176 Ela~~DpKR~KRiLs 190 (345)
.+.+.+|...+++|-
T Consensus 137 ~~~l~~~~~~~~lLD 151 (563)
T TIGR00634 137 QQLLFRPDEQRQLLD 151 (563)
T ss_pred HHHhcCHHHHHHHHH
Confidence 345567777777664
No 337
>PRK02793 phi X174 lysis protein; Provisional
Probab=53.71 E-value=1.1e+02 Score=24.23 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRD 233 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~ 233 (345)
.++|.++..|+....-...-|..|...
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~~ 30 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNVT 30 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777776666655555554443
No 338
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=53.29 E-value=3.1e+02 Score=29.20 Aligned_cols=86 Identities=29% Similarity=0.327 Sum_probs=51.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 019163 190 ANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDT-------TGLTAENKELKLRLQAMEQQAHLRDAL- 261 (345)
Q Consensus 190 sNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~-------~~L~sEN~eLK~RLQaLEqq~~Lrdal- 261 (345)
+|--+|+.--.|-.+...+|..++..|-.+...|.++...|..+. ..|..+-.+|+.+...+|++++-.-.-
T Consensus 130 ~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~ 209 (499)
T COG4372 130 QNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRA 209 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777666667777777777666666666655554443 445566777777777777765432111
Q ss_pred --HHHHHHHHHHHHHH
Q 019163 262 --NEALREEVQRLKIA 275 (345)
Q Consensus 262 --NE~L~eEV~rLk~a 275 (345)
-+.+.+|+.++..+
T Consensus 210 ~a~q~r~~ela~r~aa 225 (499)
T COG4372 210 NAAQARTEELARRAAA 225 (499)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 12344555555433
No 339
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=52.79 E-value=1.1e+02 Score=31.84 Aligned_cols=17 Identities=35% Similarity=0.419 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019163 238 TAENKELKLRLQAMEQQ 254 (345)
Q Consensus 238 ~sEN~eLK~RLQaLEqq 254 (345)
..|-..||+.|..||..
T Consensus 275 q~Ei~~LKqeLa~~EEK 291 (395)
T PF10267_consen 275 QNEIYNLKQELASMEEK 291 (395)
T ss_pred HHHHHHHHHHHHhHHHH
Confidence 34555566666666654
No 340
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=52.73 E-value=1e+02 Score=27.02 Aligned_cols=46 Identities=24% Similarity=0.432 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019163 208 ELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEq 253 (345)
..|+.-..=+.|-++|.++|+.|+-+...++.=|..|+.||.-||-
T Consensus 15 r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~ 60 (134)
T PF08232_consen 15 RFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEY 60 (134)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666777888888888888888888888888888877773
No 341
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=52.64 E-value=2.6e+02 Score=28.18 Aligned_cols=44 Identities=23% Similarity=0.290 Sum_probs=25.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 187 RILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTML 230 (345)
Q Consensus 187 RiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~L 230 (345)
+.+.-|+--....+--.+|-.+||.++..|++.|..|...+..|
T Consensus 28 ~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl 71 (333)
T KOG1853|consen 28 HFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRL 71 (333)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555666667776666666666665554433
No 342
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=52.52 E-value=2e+02 Score=26.84 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSA 225 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ 225 (345)
+.+++.++.....+...+..
T Consensus 84 ~r~~~~klk~~~~el~k~~~ 103 (194)
T PF15619_consen 84 ERELERKLKDKDEELLKTKD 103 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444433333333333
No 343
>PF04751 DUF615: Protein of unknown function (DUF615); InterPro: IPR006839 The proteins in this entry are functionally uncharacterised. The entry contains the Escherichia coli (strain K12) protein YjgA (P0A8X0 from SWISSPROT), which has been shown to comigrate with the mature 50S ribosome subunit. Therefore it either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2P0T_A.
Probab=52.42 E-value=1.4e+02 Score=27.02 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=17.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Q 019163 189 LANRQSAARSKERKIRYTSELERKV 213 (345)
Q Consensus 189 LsNRESArRSReRKkqyIeELE~KV 213 (345)
++.|....-.|.|-.+||..|-+.+
T Consensus 48 ~a~ri~~~~arrRQ~qyIGKLmR~~ 72 (157)
T PF04751_consen 48 EARRITSHEARRRQLQYIGKLMREE 72 (157)
T ss_dssp HGGG--SHHHHHHHHHHHHHHGGGS
T ss_pred HHHHHcccHHHHHHHHHHHHHHHhC
Confidence 3444455667889999999988776
No 344
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=51.72 E-value=3.8e+02 Score=30.51 Aligned_cols=90 Identities=22% Similarity=0.318 Sum_probs=44.7
Q ss_pred ChHHHHHHHHhHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHh
Q 019163 181 DPKRAKRILANRQSAAR-----------SKERKIRYTSELERKVQTLQTEATTLSAQVTML---------------QRDT 234 (345)
Q Consensus 181 DpKR~KRiLsNRESArR-----------SReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~L---------------qr~~ 234 (345)
+..|+|++++-.+.--+ -..|.+.|+.++...+..|+..+..+.+-+..+ ..+.
T Consensus 503 E~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~ 582 (961)
T KOG4673|consen 503 EENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERE 582 (961)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHH
Confidence 44677777765544322 234455555554444444444444443333222 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 235 TGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLK 273 (345)
Q Consensus 235 ~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk 273 (345)
..|...-..|++.|+.-|+++--+ .+.++.||..|.
T Consensus 583 ~~lvqqv~dLR~~L~~~Eq~aarr---Ed~~R~Ei~~Lq 618 (961)
T KOG4673|consen 583 SMLVQQVEDLRQTLSKKEQQAARR---EDMFRGEIEDLQ 618 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 344455555556666666655444 345666665443
No 345
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=51.61 E-value=2.2e+02 Score=28.14 Aligned_cols=32 Identities=13% Similarity=0.119 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 202 KIRYTSELERKVQTLQTEATTLSAQVTMLQRD 233 (345)
Q Consensus 202 KkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~ 233 (345)
++.-+++|......|...|..|...|...+..
T Consensus 4 rr~sl~el~~h~~~L~~~N~~L~~~IqdtE~s 35 (258)
T PF15397_consen 4 RRTSLQELKKHEDFLTKLNKELIKEIQDTEDS 35 (258)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhHHhh
Confidence 34456777777777777777777766554433
No 346
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=51.56 E-value=2.8e+02 Score=28.18 Aligned_cols=67 Identities=24% Similarity=0.315 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--H--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLR--L--------QAMEQQAHLRDALNEALREEVQRLKIA 275 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~R--L--------QaLEqq~~LrdalNE~L~eEV~rLk~a 275 (345)
+.||.++..|+.||..|..+|..+......- |..++-++ . ...+.+..|-+.-|..|-.|...||--
T Consensus 217 es~eERL~QlqsEN~LLrQQLddA~~K~~~k--ek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr 293 (305)
T PF14915_consen 217 ESLEERLSQLQSENMLLRQQLDDAHNKADNK--EKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKER 293 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5678999999999999999999877654322 22222222 1 234445555666777788888888744
No 347
>PF13166 AAA_13: AAA domain
Probab=51.53 E-value=3.3e+02 Score=29.03 Aligned_cols=48 Identities=19% Similarity=0.367 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQ 254 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq 254 (345)
.++...+..+..+...+...+..+......+..+-..++..+..++.+
T Consensus 406 ~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~ 453 (712)
T PF13166_consen 406 AKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQ 453 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444445555544444555555555555555543
No 348
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=51.38 E-value=1.4e+02 Score=25.06 Aligned_cols=52 Identities=27% Similarity=0.404 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019163 202 KIRYTSELERKVQTLQTEAT-TLSAQVTMLQRDTTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 202 KkqyIeELE~KVq~Lq~EN~-~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEq 253 (345)
=-.|-..=|.||..|...-. ....+|..|+.+...+..||..|+.+|.....
T Consensus 25 h~~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~ 77 (87)
T PF12709_consen 25 HALYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTERE 77 (87)
T ss_pred HHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667888888864332 36667777888888888888888777765543
No 349
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=51.09 E-value=3.7e+02 Score=29.46 Aligned_cols=13 Identities=31% Similarity=0.422 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHhc
Q 019163 265 LREEVQRLKIATG 277 (345)
Q Consensus 265 L~eEV~rLk~a~g 277 (345)
|++++.+++..+.
T Consensus 351 L~~~~~~l~~~~~ 363 (726)
T PRK09841 351 LEQERKRLNKRVS 363 (726)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 350
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=51.02 E-value=1.2e+02 Score=24.02 Aligned_cols=37 Identities=30% Similarity=0.339 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019163 208 ELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKEL 244 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eL 244 (345)
+=...|..|..|-..|+.+.-.+......|...+.++
T Consensus 9 EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~ 45 (74)
T PF12329_consen 9 EKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKEL 45 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3344455555555555544444333333344444333
No 351
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.92 E-value=1.2e+02 Score=33.39 Aligned_cols=62 Identities=29% Similarity=0.424 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019163 210 ERKVQTLQTEATTLSAQVTMLQRDTT-------GLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATGQ 278 (345)
Q Consensus 210 E~KVq~Lq~EN~~Ls~ql~~Lqr~~~-------~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~ge 278 (345)
+..|..|+.|...|..+++....+.. .|..|...|++++..|| ++.+.++.|+..++.+.++
T Consensus 7 eq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEle-------aeyd~~R~Eldqtkeal~q 75 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELE-------AEYDLARTELDQTKEALGQ 75 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666555444432 35556666666666666 6677788888888877764
No 352
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=50.77 E-value=3e+02 Score=32.21 Aligned_cols=68 Identities=22% Similarity=0.274 Sum_probs=47.9
Q ss_pred HHhHHHHHHHHHH----HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 019163 189 LANRQSAARSKER----KIRY------TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAH 256 (345)
Q Consensus 189 LsNRESArRSReR----Kkqy------IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~ 256 (345)
|+++..|+|.+.- +..| ..+...+++.|+.|...+..++..++..+..+...+..|+.+++.++...+
T Consensus 416 LK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~ 493 (1041)
T KOG0243|consen 416 LKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQ 493 (1041)
T ss_pred HHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4567778777642 3344 445667788888888888889998888888777777777777666665433
No 353
>KOG3648 consensus Golgi apparatus protein (cysteine-rich fibroblast growth factor receptor) [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.62 E-value=7.8 Score=42.89 Aligned_cols=16 Identities=63% Similarity=0.511 Sum_probs=8.0
Q ss_pred ccCCCchHHHHHHhhh
Q 019163 304 NFGGPQTQQQQQQQQQ 319 (345)
Q Consensus 304 ~~~~~~~qq~~~~~~~ 319 (345)
.++..|+||||||||+
T Consensus 66 ~~~~~~~~~~~~~~~~ 81 (1179)
T KOG3648|consen 66 LLQSSQLQQQQQQQQQ 81 (1179)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555554443
No 354
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=50.60 E-value=1.5e+02 Score=32.45 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019163 203 IRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQ 254 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq 254 (345)
|+.+.||+.....|.++|..|...+..-+.-...|...-.+|+..|..+..+
T Consensus 166 K~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~ 217 (617)
T PF15070_consen 166 KEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEK 217 (617)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888887666666554444444444444444444444433
No 355
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=50.32 E-value=3.7e+02 Score=29.23 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=9.9
Q ss_pred ccccCCCCCCCCCcccc
Q 019163 144 SYHRHSNSMDGFEVESI 160 (345)
Q Consensus 144 ~~~~~S~s~dgf~~~~~ 160 (345)
+...++.|-.||+.+.+
T Consensus 62 p~~~Pk~~~~gFDpeaL 78 (630)
T KOG0742|consen 62 PDPAPKDSWSGFDPEAL 78 (630)
T ss_pred CCCCccccccCCChHHH
Confidence 33445566667877644
No 356
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=50.28 E-value=5.3 Score=43.15 Aligned_cols=60 Identities=22% Similarity=0.389 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHH
Q 019163 193 QSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTG---LTAENKELKLRLQAME 252 (345)
Q Consensus 193 ESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~---L~sEN~eLK~RLQaLE 252 (345)
++....=.+|.+=+.+|..+|+.|+..|..|..++..|+.+... +..+...||.++..|+
T Consensus 314 E~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe 376 (713)
T PF05622_consen 314 ENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELE 376 (713)
T ss_dssp ---------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33333444688889999999999999999888887777766444 3444444444444444
No 357
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=50.12 E-value=2.4e+02 Score=27.04 Aligned_cols=45 Identities=24% Similarity=0.322 Sum_probs=34.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 183 KRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQV 227 (345)
Q Consensus 183 KR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql 227 (345)
+|.++|..+-+.|...+..=.+...+.+.++..++.+...+..+.
T Consensus 36 eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A 80 (250)
T PRK14474 36 KRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQA 80 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888888888777777888888888777777665543
No 358
>PF14282 FlxA: FlxA-like protein
Probab=50.11 E-value=1e+02 Score=25.90 Aligned_cols=18 Identities=28% Similarity=0.549 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLS 224 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls 224 (345)
+.|+.++..|+.+...|.
T Consensus 22 ~~L~~Qi~~Lq~ql~~l~ 39 (106)
T PF14282_consen 22 EQLQKQIKQLQEQLQELS 39 (106)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 359
>PRK00846 hypothetical protein; Provisional
Probab=49.95 E-value=1.4e+02 Score=24.36 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQR 232 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr 232 (345)
.+++.++..|+....-...-|..|..
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~ 34 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSE 34 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666655555444444433
No 360
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=49.71 E-value=4.3e+02 Score=29.89 Aligned_cols=16 Identities=38% Similarity=0.528 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATT 222 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~ 222 (345)
.++|.++..|+.+...
T Consensus 627 ~E~E~~L~eLq~eL~~ 642 (769)
T PF05911_consen 627 KESEQKLEELQSELES 642 (769)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 361
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=49.65 E-value=2.1e+02 Score=28.47 Aligned_cols=10 Identities=30% Similarity=0.567 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 019163 266 REEVQRLKIA 275 (345)
Q Consensus 266 ~eEV~rLk~a 275 (345)
++++.+++..
T Consensus 229 K~~~~~~~~~ 238 (264)
T PF07246_consen 229 KEDMIRLRND 238 (264)
T ss_pred HHHHHHHHhc
Confidence 3444455443
No 362
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=49.65 E-value=1.9e+02 Score=25.78 Aligned_cols=13 Identities=31% Similarity=0.452 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHhc
Q 019163 265 LREEVQRLKIATG 277 (345)
Q Consensus 265 L~eEV~rLk~a~g 277 (345)
+..+|++|++++.
T Consensus 116 ~~~ki~~Le~~i~ 128 (146)
T PF08702_consen 116 NRQKIQRLEQDID 128 (146)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3356666666543
No 363
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=49.24 E-value=3e+02 Score=27.98 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 019163 215 TLQTEATTLSAQVT 228 (345)
Q Consensus 215 ~Lq~EN~~Ls~ql~ 228 (345)
.|+.+...|..++.
T Consensus 155 rL~~e~~~~~~qlE 168 (342)
T PF06632_consen 155 RLESEANKLLKQLE 168 (342)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 364
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=49.17 E-value=2.6e+02 Score=31.38 Aligned_cols=29 Identities=28% Similarity=0.291 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019163 219 EATTLSAQVTMLQRDTTGLTAENKELKLR 247 (345)
Q Consensus 219 EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~R 247 (345)
.+..|...+..++.+...|..|-+++|.|
T Consensus 63 ~~~~~~~~~~~~e~~~~~lr~e~ke~K~r 91 (717)
T PF09730_consen 63 LNQELRKECEDLELERKRLREEIKEYKFR 91 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444
No 365
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=49.08 E-value=2e+02 Score=25.95 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 215 TLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 215 ~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
+|.+.--..++++.-+++. ..|+.+|.+|..++..|.
T Consensus 58 TLKNRGYA~sCR~KRv~Qk-~eLE~~k~~L~qqv~~L~ 94 (135)
T KOG4196|consen 58 TLKNRGYAQSCRVKRVQQK-HELEKEKAELQQQVEKLK 94 (135)
T ss_pred HHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3443333344444433332 344455554444444333
No 366
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=49.05 E-value=1.8e+02 Score=30.92 Aligned_cols=53 Identities=21% Similarity=0.294 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019163 202 KIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQ 254 (345)
Q Consensus 202 KkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq 254 (345)
..+|++-|...+++.......+...+..+.++...+..+-.+|.-+|..+-.+
T Consensus 430 SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~ 482 (507)
T PF05600_consen 430 SPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVER 482 (507)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 35788888888888888888888888888888888888777777777666643
No 367
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=49.00 E-value=1e+02 Score=33.28 Aligned_cols=42 Identities=12% Similarity=0.071 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019163 203 IRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKEL 244 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eL 244 (345)
.+++.+++.-+..|+.++..|..++..+...|..+..+|.+.
T Consensus 486 ee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e 527 (622)
T COG5185 486 EEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERE 527 (622)
T ss_pred HHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 456677777778888888888888777777777666666554
No 368
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=48.91 E-value=95 Score=31.19 Aligned_cols=19 Identities=16% Similarity=0.392 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019163 248 LQAMEQQAHLRDALNEALR 266 (345)
Q Consensus 248 LQaLEqq~~LrdalNE~L~ 266 (345)
|..||.+..++-..++.|+
T Consensus 238 ia~Le~eLAmQKs~seElk 256 (330)
T KOG2991|consen 238 IAELEIELAMQKSQSEELK 256 (330)
T ss_pred HHHHHHHHHHHHhhHHHHH
Confidence 3444444444434444333
No 369
>PRK12704 phosphodiesterase; Provisional
Probab=48.87 E-value=3.6e+02 Score=28.75 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Q 019163 223 LSAQVTMLQRDTTGLTAENKELKLR 247 (345)
Q Consensus 223 Ls~ql~~Lqr~~~~L~sEN~eLK~R 247 (345)
|..+...|.+....|.....+|..+
T Consensus 91 L~~Ree~Le~r~e~Lekke~eL~~r 115 (520)
T PRK12704 91 LLQKEENLDRKLELLEKREEELEKK 115 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444333
No 370
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=48.79 E-value=1.5e+02 Score=26.31 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 203 IRYTSELERKVQTLQTEATTLSAQVTMLQRD 233 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~ 233 (345)
.+.+++|-.+-+.|..++..|...|..|+.+
T Consensus 34 aqrleel~~knqqLreQqk~L~e~i~~LE~R 64 (120)
T PF10482_consen 34 AQRLEELFSKNQQLREQQKTLHENIKVLENR 64 (120)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666655554
No 371
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=48.47 E-value=1.5e+02 Score=25.90 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTM 229 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~ 229 (345)
.++..++..|+........++..
T Consensus 54 ~~i~~~l~~L~~~~~~~~~rl~~ 76 (141)
T PF13874_consen 54 KEINDKLEELQKHDLETSARLEE 76 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHH
Confidence 33344444443333333333333
No 372
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=48.47 E-value=2.5e+02 Score=26.86 Aligned_cols=93 Identities=20% Similarity=0.256 Sum_probs=42.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHH
Q 019163 184 RAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAE-------NKELKLRLQAMEQQAH 256 (345)
Q Consensus 184 R~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sE-------N~eLK~RLQaLEqq~~ 256 (345)
|++.+-.-=..|+..=.+...-+..|+.+.+.++.+...|..+...++.....|..+ +..|..++...+....
T Consensus 13 rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~ 92 (246)
T PF00769_consen 13 RLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIA 92 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444455555666666666666666666666555555544444433 3333333333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 019163 257 LRDALNEALREEVQRLKIAT 276 (345)
Q Consensus 257 LrdalNE~L~eEV~rLk~a~ 276 (345)
......+.-.+|+..|+..+
T Consensus 93 ~l~ee~~~ke~Ea~~lq~el 112 (246)
T PF00769_consen 93 RLEEESERKEEEAEELQEEL 112 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 22222333335555555443
No 373
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=48.41 E-value=2.1e+02 Score=31.65 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 234 TTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIA 275 (345)
Q Consensus 234 ~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a 275 (345)
...|+.+++.++.-|..|+.+..-+ ...+.+++|+.-||..
T Consensus 319 I~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk~i 359 (629)
T KOG0963|consen 319 ISALEKELKAKISELEELKEKLNSR-SDYEEIKKELSILKAI 359 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHHh
Confidence 4445666666666666666666555 6677888999888854
No 374
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.07 E-value=1.7e+02 Score=33.65 Aligned_cols=43 Identities=26% Similarity=0.389 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 248 (345)
|+++.........|...|.++|.+++..+..|.-|..+|..+|
T Consensus 474 ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ql 516 (1118)
T KOG1029|consen 474 IEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQL 516 (1118)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3444444444445555566666666665555555555554443
No 375
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=47.88 E-value=1.9e+02 Score=25.24 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=2.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 226 QVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 226 ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
.+..+......|..|..+|+.++++|+
T Consensus 94 ~~eilr~~g~~l~~eEe~L~~~le~l~ 120 (141)
T PF13874_consen 94 KQEILRNRGYALSPEEEELRKRLEALE 120 (141)
T ss_dssp HHHHHHH--------------------
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 333333333334444444444443333
No 376
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=47.65 E-value=1.3e+02 Score=30.58 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 203 IRYTSELERKVQTLQTEATTLSAQVTM 229 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~Ls~ql~~ 229 (345)
.+|++.|+.++..|+.+..+|..++..
T Consensus 241 ~~~~~~l~~~~~~~~~~i~~l~~~l~~ 267 (406)
T PF02388_consen 241 KEYLESLQEKLEKLEKEIEKLEEKLEK 267 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355556666666666666665555443
No 377
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=47.55 E-value=1.4e+02 Score=23.69 Aligned_cols=52 Identities=23% Similarity=0.308 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019163 202 KIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 202 KkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEq 253 (345)
|-..|..|-.+-+.|....-.+...|..|......+..+...|+.++..++.
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~ 61 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEK 61 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777777777777777777777788777777777766663
No 378
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=47.32 E-value=64 Score=25.15 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTM 229 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~ 229 (345)
++||+.++..|+.|...+...+..
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888887777654
No 379
>PRK04325 hypothetical protein; Provisional
Probab=47.20 E-value=1.5e+02 Score=23.69 Aligned_cols=26 Identities=15% Similarity=0.258 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQR 232 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr 232 (345)
..+|.++..|+....-+...|..|..
T Consensus 5 ~~~e~Ri~~LE~klAfQE~tIe~LN~ 30 (74)
T PRK04325 5 QEMEDRITELEIQLAFQEDLIDGLNA 30 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666655555555554443
No 380
>PRK14143 heat shock protein GrpE; Provisional
Probab=47.16 E-value=1.4e+02 Score=28.88 Aligned_cols=24 Identities=8% Similarity=0.171 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVT 228 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~ 228 (345)
.+++|..++.++.++...++.+..
T Consensus 82 e~~elkd~~lR~~AdfeN~RKR~~ 105 (238)
T PRK14143 82 ELEELNSQYMRIAADFDNFRKRTS 105 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555543
No 381
>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]
Probab=47.06 E-value=9.7 Score=44.28 Aligned_cols=56 Identities=29% Similarity=0.323 Sum_probs=24.8
Q ss_pred CCCCCCCCCCCCcch----hcccccCCCchHHHHHHhh--hcC-CCCCCCC--CCCCCCCCCccc
Q 019163 285 NPFGRGLPPQFPSHQ----QAMHNFGGPQTQQQQQQQQ--QQV-PQPSTNN--QTHGQSRPNFMD 340 (345)
Q Consensus 285 ~P~~~~~q~~~~~q~----~~~~~~~~~~~qq~~~~~~--~~~-~~~~~~~--~~~~~~~~~~~~ 340 (345)
-||+...+..-++|+ .||+.-++||++|||++|+ +|+ ++-.+++ ...|-+.|+|.-
T Consensus 1410 ~p~~~~~q~~p~~qq~~~~hq~q~t~q~q~~Qqq~~~~~qqqlqhq~~n~~~vQt~s~p~p~~l~ 1474 (1517)
T KOG1883|consen 1410 APLLPSHQQMPPPQQHSSSHQMQDTSQHQTIQQQSNHPTQQQLQHQIPNMSMVQTMSPPYPGFLH 1474 (1517)
T ss_pred CccCchhhhCCCccCCchhhhhhhhhHHHHHHHHhcchHHHHHHHhccccceeeecCCCCCcccc
Confidence 355444444333333 3445555566555554322 122 2223332 444556666543
No 382
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=47.05 E-value=3.9e+02 Score=28.59 Aligned_cols=8 Identities=13% Similarity=0.389 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 019163 267 EEVQRLKI 274 (345)
Q Consensus 267 eEV~rLk~ 274 (345)
+.+.+++.
T Consensus 147 e~l~~f~~ 154 (475)
T PRK10361 147 EQLDGFRR 154 (475)
T ss_pred HHHHHHHH
Confidence 44444443
No 383
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=47.04 E-value=1.1e+02 Score=30.66 Aligned_cols=36 Identities=25% Similarity=0.241 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAEN 241 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN 241 (345)
|++||..+..|+.++......+..+.+.+..|..|.
T Consensus 121 lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~ 156 (302)
T PF09738_consen 121 LEELEETLAQLQREYREKIRELERQKRAHDSLREEL 156 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333333333333333333333
No 384
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=46.69 E-value=3.7e+02 Score=32.14 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKEL 244 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eL 244 (345)
+.+.+.++..++++...|.+++..++++...+...|..+
T Consensus 496 ~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~ 534 (1317)
T KOG0612|consen 496 QKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNA 534 (1317)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555544444444444444
No 385
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=46.46 E-value=2.2e+02 Score=25.61 Aligned_cols=12 Identities=42% Similarity=0.601 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHH
Q 019163 264 ALREEVQRLKIA 275 (345)
Q Consensus 264 ~L~eEV~rLk~a 275 (345)
.|+.+|+.+|..
T Consensus 142 ~lr~~iE~~K~~ 153 (177)
T PF07798_consen 142 NLRTEIESLKWD 153 (177)
T ss_pred HHHHHHHHHHHH
Confidence 466666666644
No 386
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=46.45 E-value=81 Score=24.48 Aligned_cols=29 Identities=24% Similarity=0.219 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 202 KIRYTSELERKVQTLQTEATTLSAQVTML 230 (345)
Q Consensus 202 KkqyIeELE~KVq~Lq~EN~~Ls~ql~~L 230 (345)
....+..++.++..++.||..|..++..|
T Consensus 29 ~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 29 LNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666665543
No 387
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=46.31 E-value=2.3e+02 Score=25.78 Aligned_cols=37 Identities=27% Similarity=0.428 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019163 209 LERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELK 245 (345)
Q Consensus 209 LE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK 245 (345)
|..+|..|+.+|..|..++..+......|.....+|+
T Consensus 94 L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~ 130 (158)
T PF09744_consen 94 LQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELK 130 (158)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHH
Confidence 4444444444444444444333333333443333333
No 388
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=46.26 E-value=4e+02 Score=30.45 Aligned_cols=36 Identities=33% Similarity=0.474 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 019163 237 LTAENKELKLRLQAMEQQ-AHLRDALNEALREEVQRLK 273 (345)
Q Consensus 237 L~sEN~eLK~RLQaLEqq-~~LrdalNE~L~eEV~rLk 273 (345)
|..|-..+|.++.+++.. .+|+ ..+|.|+.|+..|+
T Consensus 221 L~~e~~s~kk~l~~~~~~k~rl~-~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 221 LEQELESVKKQLEEMRHDKDKLR-TDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHH
Confidence 344444444444444432 2222 34455555555555
No 389
>PRK00295 hypothetical protein; Provisional
Probab=46.24 E-value=1.4e+02 Score=23.35 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 209 LERKVQTLQTEATTLSAQVTMLQRD 233 (345)
Q Consensus 209 LE~KVq~Lq~EN~~Ls~ql~~Lqr~ 233 (345)
+|.++..|+....-+...|..|...
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~ 27 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDV 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666555555555544443
No 390
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=46.13 E-value=2.3e+02 Score=28.82 Aligned_cols=48 Identities=21% Similarity=0.320 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019163 222 TLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIAT 276 (345)
Q Consensus 222 ~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~ 276 (345)
.|..-+.....++..|..|...|++++..+.. -+..|++-+.+++...
T Consensus 69 ~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qG-------D~KlLR~~la~~r~~~ 116 (319)
T PF09789_consen 69 NLAQLLSESREQNKKLKEEVEELRQKLNEAQG-------DIKLLREKLARQRVGD 116 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------hHHHHHHHHHhhhhhh
Confidence 33344445555555555555555555544442 2344555555655543
No 391
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=46.07 E-value=69 Score=26.16 Aligned_cols=32 Identities=28% Similarity=0.433 Sum_probs=15.3
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 019163 196 ARSKERKIR----YTSELERKVQTLQTEATTLSAQV 227 (345)
Q Consensus 196 rRSReRKkq----yIeELE~KVq~Lq~EN~~Ls~ql 227 (345)
.+-|.||.+ .|+.|..++..|..+|..|..++
T Consensus 63 ~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 63 KRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444443 34445555555555555554443
No 392
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=46.03 E-value=95 Score=26.39 Aligned_cols=43 Identities=28% Similarity=0.417 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 248 (345)
..||...++..+.|..-|+..++.+..++..|+.|-+.+|...
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3577788888888888888888888877777777777776544
No 393
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=46.02 E-value=1.1e+02 Score=28.36 Aligned_cols=38 Identities=21% Similarity=0.402 Sum_probs=20.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 226 QVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNE 263 (345)
Q Consensus 226 ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE 263 (345)
-+.+.+++...|..+|++|+.+++.|-..++-.+++..
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li~~Ar~Ne~~~~ 78 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELIENARENEAIFQ 78 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666666666666665555544444333
No 394
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.94 E-value=3.2e+02 Score=30.40 Aligned_cols=41 Identities=27% Similarity=0.346 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHH
Q 019163 213 VQTLQTEATTLSAQVTMLQ---RDTTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 213 Vq~Lq~EN~~Ls~ql~~Lq---r~~~~L~sEN~eLK~RLQaLEq 253 (345)
...|+.||-.|..++..|. -+|.+|.-|++.|...+..|..
T Consensus 172 YSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~ 215 (772)
T KOG0999|consen 172 YSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNS 215 (772)
T ss_pred HHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554443 2355555566655555544443
No 395
>PRK14161 heat shock protein GrpE; Provisional
Probab=45.88 E-value=2.5e+02 Score=26.00 Aligned_cols=33 Identities=27% Similarity=0.272 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019163 214 QTLQTEATTLSAQVTMLQRDTTGLTAENKELKL 246 (345)
Q Consensus 214 q~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~ 246 (345)
.+++.+...|..++..+...+..+.+|-..++.
T Consensus 22 ~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rk 54 (178)
T PRK14161 22 ETANPEITALKAEIEELKDKLIRTTAEIDNTRK 54 (178)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 396
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=45.79 E-value=1.1e+02 Score=30.66 Aligned_cols=50 Identities=24% Similarity=0.229 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHH
Q 019163 204 RYTSELERKVQTLQTEATTLSAQVTMLQRDT-------TGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~-------~~L~sEN~eLK~RLQaLEq 253 (345)
..+.++|.+|+.|+.-|..|.++++.-...| ..+..|.+.++.+|..||.
T Consensus 217 dRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kmeE 273 (311)
T PF04642_consen 217 DRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKMEE 273 (311)
T ss_pred HHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhcccH
Confidence 3456899999999999999999984322222 3455555666666666654
No 397
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=45.59 E-value=1.5e+02 Score=23.26 Aligned_cols=59 Identities=20% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 215 TLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLK 273 (345)
Q Consensus 215 ~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk 273 (345)
.|+.-...=..--..++.+...+.+.|-.+..+|+..+..-+--....+.|++|+..|+
T Consensus 1 elQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 1 ELQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 398
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.53 E-value=4.6e+02 Score=28.94 Aligned_cols=26 Identities=38% Similarity=0.622 Sum_probs=19.2
Q ss_pred ccCCCCCCCCCCCCcccccccchhcc
Q 019163 90 QKQSQNPPKPKPINHLRSLSVDSDFF 115 (345)
Q Consensus 90 ~~~~~~~~~~~~~~h~rS~s~Ds~~~ 115 (345)
+|-+..-+.+.+.+|.||-|+|-.+|
T Consensus 554 ~~~~~~~p~~~p~~~~~~~~~~~~~f 579 (737)
T KOG1955|consen 554 KKEPPPLPPPRPHRHARSSSLDLNKF 579 (737)
T ss_pred ccCCCCCCCCCcccccccchhhhhhh
Confidence 34556667777899999999876544
No 399
>PHA03011 hypothetical protein; Provisional
Probab=44.95 E-value=1.6e+02 Score=25.83 Aligned_cols=58 Identities=22% Similarity=0.242 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019163 212 KVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIAT 276 (345)
Q Consensus 212 KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~ 276 (345)
.+..+.....+|..+..+|..++.-+++|-+.|.+-+|.-.. .--.|+.|+.+||..+
T Consensus 58 D~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d-------~I~~LraeIDkLK~ni 115 (120)
T PHA03011 58 DINAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDD-------EIHFLRAEIDKLKENI 115 (120)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH-------HHHHHHHHHHHHHHHH
Confidence 344444455566666666777777777776666544443332 2234677788877654
No 400
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=44.93 E-value=5.3e+02 Score=30.47 Aligned_cols=43 Identities=26% Similarity=0.331 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 248 (345)
+++||......-.+...|...+....-+...+.+++.++|.++
T Consensus 420 ~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~ 462 (1200)
T KOG0964|consen 420 IEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKREL 462 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHH
Confidence 3333333333333333344344433334444455555555444
No 401
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=44.88 E-value=3.6e+02 Score=32.32 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019163 216 LQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAM 251 (345)
Q Consensus 216 Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaL 251 (345)
++.+......++...+.....|.++++.|+.++..+
T Consensus 492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~ 527 (1317)
T KOG0612|consen 492 LQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDA 527 (1317)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444555555555555544443
No 402
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=44.85 E-value=4.3e+02 Score=29.89 Aligned_cols=64 Identities=13% Similarity=0.340 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIAT 276 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~ 276 (345)
|+.++.++..-..|...|..++.. +..++..++.+|..+.....-++...+.|..+|.+|+.-+
T Consensus 289 ~d~~~~eL~rk~~E~~~~qt~l~~-------~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rl 352 (775)
T PF10174_consen 289 MDRLKLELSRKKSELEALQTRLET-------LEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRL 352 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 555555555555555555555444 4445555555555555555555555666666666666543
No 403
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=44.76 E-value=1.2e+02 Score=32.62 Aligned_cols=58 Identities=26% Similarity=0.335 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019163 202 KIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIAT 276 (345)
Q Consensus 202 KkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~ 276 (345)
|+.-++||..+|..|..-...|..+ .-++|++-+..|+.+..+| ..|+-||+.||.++
T Consensus 567 ~k~s~delr~qi~el~~ive~lk~~-------------~~kel~kl~~dleeek~mr----~~lemei~~lkka~ 624 (627)
T KOG4348|consen 567 KKNSLDELRAQIIELLCIVEALKKD-------------HGKELEKLRKDLEEEKTMR----SNLEMEIEKLKKAV 624 (627)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHH----hhhHhhHHHHHHHh
Confidence 3445667766666655544444333 2345555556666666666 34667888888775
No 404
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=44.52 E-value=2.9e+02 Score=26.42 Aligned_cols=73 Identities=19% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHH
Q 019163 204 RYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELK-------------------LRLQAMEQQAHLRDALNEA 264 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK-------------------~RLQaLEqq~~LrdalNE~ 264 (345)
+||.+.+..+..+......+...-..+++++..+......+. .+++.+|.++...++....
T Consensus 31 Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~ 110 (225)
T COG1842 31 QAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQ 110 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHh
Q 019163 265 LREEVQRLKIAT 276 (345)
Q Consensus 265 L~eEV~rLk~a~ 276 (345)
+.+-+.+|+..+
T Consensus 111 ~~~~~~~l~~~~ 122 (225)
T COG1842 111 AEEQVEKLKKQL 122 (225)
T ss_pred HHHHHHHHHHHH
No 405
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=44.47 E-value=2.6e+02 Score=25.88 Aligned_cols=92 Identities=21% Similarity=0.320 Sum_probs=52.5
Q ss_pred HHHHHHHHhHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHH
Q 019163 183 KRAKRILANRQSAARSKE----RK-IRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGL----TAENKELKLRLQAMEQ 253 (345)
Q Consensus 183 KR~KRiLsNRESArRSRe----RK-kqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L----~sEN~eLK~RLQaLEq 253 (345)
.|.|+-++-+.-|+++|. |. ...-++||.-+.=...|...++.+|....++...| ...-+++|.-|.++..
T Consensus 44 ErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nE 123 (159)
T PF04949_consen 44 ERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNE 123 (159)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777764 22 22335566655556667777777777666665443 3344566666777666
Q ss_pred HHHHHHHHHHHHH---HHHHHHHH
Q 019163 254 QAHLRDALNEALR---EEVQRLKI 274 (345)
Q Consensus 254 q~~LrdalNE~L~---eEV~rLk~ 274 (345)
..+-+..|...|. .|-++|++
T Consensus 124 knkeK~~Lv~~L~eLv~eSE~~rm 147 (159)
T PF04949_consen 124 KNKEKAQLVTRLMELVSESERLRM 147 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444433333333 44455554
No 406
>PLN02678 seryl-tRNA synthetase
Probab=44.27 E-value=1.6e+02 Score=31.01 Aligned_cols=53 Identities=17% Similarity=0.242 Sum_probs=33.2
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 019163 181 DPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGL 237 (345)
Q Consensus 181 DpKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L 237 (345)
++..+++.+++|-.. .+ -...|-+|..+...|+.+...|..+...+.++...+
T Consensus 14 ~~~~v~~~l~~R~~~-~~---~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~ 66 (448)
T PLN02678 14 DPELIRESQRRRFAS-VE---LVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKL 66 (448)
T ss_pred CHHHHHHHHHhhCCC-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666421 11 245667777777777777777777777777766543
No 407
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=44.19 E-value=1.7e+02 Score=31.69 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=12.2
Q ss_pred cccCCCCCCCCCCCCcccccccc
Q 019163 89 QQKQSQNPPKPKPINHLRSLSVD 111 (345)
Q Consensus 89 ~~~~~~~~~~~~~~~h~rS~s~D 111 (345)
++-++..-++|-..+-+++-..|
T Consensus 89 ~~~~s~~DpRplrdk~yqq~c~~ 111 (622)
T COG5185 89 QQHLSNRDPRPLRDKNYQQACQE 111 (622)
T ss_pred hhhcccCCCcccccchHHHHHHH
Confidence 33444445555555666665544
No 408
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=44.17 E-value=3.2e+02 Score=29.85 Aligned_cols=40 Identities=13% Similarity=0.240 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019163 212 KVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAM 251 (345)
Q Consensus 212 KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaL 251 (345)
++..++.+...+..++..+++++..|+++-.-++.++..+
T Consensus 213 q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~ 252 (596)
T KOG4360|consen 213 QARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYL 252 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3444444444444444444444444544444444444333
No 409
>PRK12705 hypothetical protein; Provisional
Probab=44.12 E-value=4.4e+02 Score=28.34 Aligned_cols=7 Identities=14% Similarity=0.510 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 019163 210 ERKVQTL 216 (345)
Q Consensus 210 E~KVq~L 216 (345)
+.+...|
T Consensus 94 ~~~~~~l 100 (508)
T PRK12705 94 DARAEKL 100 (508)
T ss_pred HHHHHHH
Confidence 3333333
No 410
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=44.08 E-value=3.9e+02 Score=27.81 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019163 223 LSAQVTMLQRDTTGLTAENKELKLRLQAM 251 (345)
Q Consensus 223 Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaL 251 (345)
+..++..+..+...+..+-.+|+.+|+.+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 164 (525)
T TIGR02231 136 NGSEIERLLTEDREAERRIRELEKQLSEL 164 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334443333333
No 411
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=43.77 E-value=2.4e+02 Score=30.76 Aligned_cols=70 Identities=16% Similarity=0.215 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 194 SAARSKERKIRYTSELERKVQTL---QTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALR 266 (345)
Q Consensus 194 SArRSReRKkqyIeELE~KVq~L---q~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~ 266 (345)
-...+.+++++|-.||-+--..| +++...|--++...+++...+..+|+.++.....+|.+.++- .++|+
T Consensus 36 ~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i---~d~l~ 108 (604)
T KOG3564|consen 36 DFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLI---KDMLK 108 (604)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH---HHHHh
Confidence 34557777777766665444444 344455666888888999999999999999999999875543 45554
No 412
>PF15242 FAM53: Family of FAM53
Probab=43.56 E-value=12 Score=37.65 Aligned_cols=22 Identities=45% Similarity=0.670 Sum_probs=17.6
Q ss_pred CCCCCCCCCCCCcccccccchh
Q 019163 92 QSQNPPKPKPINHLRSLSVDSD 113 (345)
Q Consensus 92 ~~~~~~~~~~~~h~rS~s~Ds~ 113 (345)
..+.+..||+.|||||||+--+
T Consensus 109 ~~~~p~aPPsKRhCRSLS~pdE 130 (314)
T PF15242_consen 109 TSGPPPAPPSKRHCRSLSVPDE 130 (314)
T ss_pred CCCCCCCCcchhhhcccCCccc
Confidence 4456778899999999998554
No 413
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=43.50 E-value=2.7e+02 Score=30.55 Aligned_cols=81 Identities=14% Similarity=0.026 Sum_probs=38.1
Q ss_pred ccCChhHHHHhhccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHH
Q 019163 167 KAVDRDRLAELALIDPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVT-MLQRDTTGLTAENKELK 245 (345)
Q Consensus 167 kim~~e~laEla~~DpKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~-~Lqr~~~~L~sEN~eLK 245 (345)
++|.+..-.+...+-++-..++-.||+-+--+----+.....++..+...+.+|..=...+. ++-++++..+.|-..|.
T Consensus 567 ~~~~a~~ag~~s~l~~~v~qs~~~~~q~~~~~~fs~q~~q~~~~~tlddfq~~~hrdirNl~~ell~Qfhm~~~Ems~ll 646 (673)
T KOG4378|consen 567 AQMDADWAGEFSELRDFVDQSCEKVEQELEYVTFSNQRLQANKMTTLDDFQVENHRDIRNLALELLLQFHMFMREMSRLL 646 (673)
T ss_pred hhhhhhhhhhhHHHHHHHHhhhhhHHhhcccchhHHHHHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433333333344445555565555444433344444555555555666554333222 33445555666655553
Q ss_pred HH
Q 019163 246 LR 247 (345)
Q Consensus 246 ~R 247 (345)
.|
T Consensus 647 er 648 (673)
T KOG4378|consen 647 ER 648 (673)
T ss_pred HH
Confidence 33
No 414
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=43.44 E-value=4.7e+02 Score=29.18 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 019163 208 ELERKVQTLQTEATTLSAQVTMLQRDTTGLTAE 240 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sE 240 (345)
+++.+|..|+.+...-..++..++++...|...
T Consensus 562 ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ 594 (717)
T PF10168_consen 562 EIQRRVKLLKQQKEQQLKELQELQEERKSLRES 594 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443333333
No 415
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=43.39 E-value=2.5e+02 Score=27.97 Aligned_cols=51 Identities=18% Similarity=0.250 Sum_probs=30.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 183 KRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRD 233 (345)
Q Consensus 183 KR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~ 233 (345)
|..|+.|.+....-+.+.-.-..|..||.++..++.++....++|..+.++
T Consensus 144 R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~ 194 (271)
T PF13805_consen 144 RDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQ 194 (271)
T ss_dssp HHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 555556666554433333333356777777777777777777777666665
No 416
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=43.38 E-value=1.3e+02 Score=28.27 Aligned_cols=52 Identities=19% Similarity=0.350 Sum_probs=44.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 019163 186 KRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGL 237 (345)
Q Consensus 186 KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L 237 (345)
+=|++-|.++..-|.+=+.|..+||.+=..|.....-+..+|..|++.+..+
T Consensus 116 ~ai~rer~~~~~E~~ka~~la~qLe~ke~el~~~d~fykeql~~le~k~~e~ 167 (187)
T PF05300_consen 116 RAILRERASTEQERQKAKQLARQLEEKEAELKKQDAFYKEQLARLEEKNAEF 167 (187)
T ss_pred HHHHHhhhcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478889999999999999999999999999999998999988887776554
No 417
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=43.35 E-value=42 Score=29.07 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019163 209 LERKVQTLQTEATTLSAQVTML 230 (345)
Q Consensus 209 LE~KVq~Lq~EN~~Ls~ql~~L 230 (345)
|.++.+.|+.||+-|+-++..|
T Consensus 77 lkkk~~~LeEENNlLklKievL 98 (108)
T cd07429 77 LKKKNQQLEEENNLLKLKIEVL 98 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3335556666666665555543
No 418
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=43.24 E-value=3.7e+02 Score=27.29 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAM 251 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaL 251 (345)
..|..-+.....+|..|..++..|++.+..+..+++.|+..+...
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 456666777777777777777777777777777777777766554
No 419
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=43.22 E-value=2.2e+02 Score=31.98 Aligned_cols=74 Identities=24% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019163 202 KIRYTSELERKVQTLQTEAT---TLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATGQ 278 (345)
Q Consensus 202 KkqyIeELE~KVq~Lq~EN~---~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~ge 278 (345)
..+|+++|+.....+..|.. .-..-+..|+.+...|.+++.+ +..|+.+.-..+-+|+-|..++++-..+..+
T Consensus 249 qlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~----~~~l~~~~~~LELeN~~l~tkL~rwE~~~~~ 324 (716)
T KOG4593|consen 249 QLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGR----LEKLQSTLLGLELENEDLLTKLQRWERADQE 324 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH----HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Q ss_pred C
Q 019163 279 I 279 (345)
Q Consensus 279 i 279 (345)
.
T Consensus 325 ~ 325 (716)
T KOG4593|consen 325 M 325 (716)
T ss_pred h
No 420
>PRK14148 heat shock protein GrpE; Provisional
Probab=43.00 E-value=2.2e+02 Score=26.82 Aligned_cols=9 Identities=33% Similarity=0.678 Sum_probs=4.3
Q ss_pred CCCCCCCCC
Q 019163 283 NGNPFGRGL 291 (345)
Q Consensus 283 ~~~P~~~~~ 291 (345)
.|.||.-.+
T Consensus 145 ~G~~FDP~~ 153 (195)
T PRK14148 145 KGEKFDPNL 153 (195)
T ss_pred CCCCCChhH
Confidence 355554444
No 421
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=42.86 E-value=80 Score=31.73 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019163 209 LERKVQTLQTEATTLSAQV 227 (345)
Q Consensus 209 LE~KVq~Lq~EN~~Ls~ql 227 (345)
|+.+++.|+..+..|..++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~ 31 (389)
T PRK03992 13 LEEQIRQLELKLRDLEAEN 31 (389)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444333333333
No 422
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=42.79 E-value=1e+02 Score=26.13 Aligned_cols=42 Identities=19% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 248 (345)
+.|...+..|+.++..+..++..+...+..+..+.+.||..+
T Consensus 76 ~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 76 EYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 423
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=42.55 E-value=3.8e+02 Score=28.18 Aligned_cols=45 Identities=22% Similarity=0.320 Sum_probs=23.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 187 RILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQ 231 (345)
Q Consensus 187 RiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lq 231 (345)
+.|..|..|.+.-..-++-+.++...+..+..+.......+..++
T Consensus 197 ~~L~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk 241 (511)
T PF09787_consen 197 QELEERPKALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYK 241 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344555555555555555555555555555555555444444433
No 424
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=42.44 E-value=3.9e+02 Score=27.32 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=15.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Q 019163 183 KRAKRILANRQSAARSKERKIRY 205 (345)
Q Consensus 183 KR~KRiLsNRESArRSReRKkqy 205 (345)
++.+++|++|...-..=.||...
T Consensus 122 ~e~r~~lk~RI~rSEAFKRKllE 144 (323)
T PF08537_consen 122 REERRLLKDRILRSEAFKRKLLE 144 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55567888988776666666443
No 425
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=42.42 E-value=3.1e+02 Score=26.11 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019163 199 KERKIRYTSELERKVQTL 216 (345)
Q Consensus 199 ReRKkqyIeELE~KVq~L 216 (345)
..-|.++-.-|+-|-..|
T Consensus 131 ~lvk~e~EqLL~YK~~ql 148 (195)
T PF12761_consen 131 ALVKREFEQLLDYKERQL 148 (195)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444443333
No 426
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=42.36 E-value=2.6e+02 Score=30.05 Aligned_cols=24 Identities=13% Similarity=0.289 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVT 228 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~ 228 (345)
-++.||.++..|+.+..+|..++.
T Consensus 564 ~~~~~e~~i~~le~~~~~l~~~l~ 587 (638)
T PRK10636 564 EIARLEKEMEKLNAQLAQAEEKLG 587 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677777777777777766664
No 427
>PRK14011 prefoldin subunit alpha; Provisional
Probab=42.11 E-value=1.5e+02 Score=26.60 Aligned_cols=7 Identities=57% Similarity=0.601 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 019163 246 LRLQAME 252 (345)
Q Consensus 246 ~RLQaLE 252 (345)
.+++.++
T Consensus 127 ~k~~~~~ 133 (144)
T PRK14011 127 KRAQAIE 133 (144)
T ss_pred HHHHHHH
Confidence 3344443
No 428
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=42.11 E-value=4.9e+02 Score=28.29 Aligned_cols=40 Identities=15% Similarity=0.247 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKEL 244 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eL 244 (345)
||++...+|..|+...+....++..+..+...++.+|+.|
T Consensus 38 ~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~L 77 (701)
T PF09763_consen 38 YLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGL 77 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCch
Confidence 4444444444444444444444444444444444444443
No 429
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=41.92 E-value=1.5e+02 Score=30.17 Aligned_cols=7 Identities=14% Similarity=0.439 Sum_probs=3.6
Q ss_pred CCCCCCC
Q 019163 283 NGNPFGR 289 (345)
Q Consensus 283 ~~~P~~~ 289 (345)
..+||+.
T Consensus 113 ~ps~~~~ 119 (337)
T PRK14872 113 DPAHWGS 119 (337)
T ss_pred CCCccce
Confidence 3456654
No 430
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=41.78 E-value=2.1e+02 Score=27.56 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 209 LERKVQTLQTEATTLSAQVTMLQRD 233 (345)
Q Consensus 209 LE~KVq~Lq~EN~~Ls~ql~~Lqr~ 233 (345)
|+..+..+.+.+..|+.....+...
T Consensus 114 LeEe~~~~~~nlk~l~~~ee~~~q~ 138 (205)
T KOG1003|consen 114 LEEDLRILDSNLKSLSAKEEKLEQK 138 (205)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHhhh
Confidence 3333333333333333333333333
No 431
>PRK01156 chromosome segregation protein; Provisional
Probab=41.54 E-value=5.3e+02 Score=28.57 Aligned_cols=35 Identities=9% Similarity=0.154 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019163 211 RKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELK 245 (345)
Q Consensus 211 ~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK 245 (345)
.++..+..+...|..++..+..++..+..+-..|+
T Consensus 204 ~~i~el~~~~~~l~~~i~~~~~el~~~~~~l~~l~ 238 (895)
T PRK01156 204 KQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLK 238 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 432
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=41.44 E-value=3.2e+02 Score=25.94 Aligned_cols=57 Identities=25% Similarity=0.362 Sum_probs=26.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019163 184 RAKRILANRQSAARSKERKIRYTSELERK--------------VQTLQTEATTLSAQVTMLQRDTTGLTAENK 242 (345)
Q Consensus 184 R~KRiLsNRESArRSReRKkqyIeELE~K--------------Vq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~ 242 (345)
+.-+.+.+-..|+.+|-||. |.+||.+ +.-|+.|-..|..++..=......++.|++
T Consensus 95 ~~q~Rm~~qL~~aE~rhrr~--i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~ 165 (192)
T PF09727_consen 95 KMQRRMLEQLAAAEKRHRRT--IQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQQLEQEKAQQKKLEKEHK 165 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555555554 3444442 344555555555544443333334444433
No 433
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=41.26 E-value=1.6e+02 Score=22.88 Aligned_cols=29 Identities=31% Similarity=0.500 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 019163 211 RKVQTLQTEATTLSAQVTMLQRDTTGLTA 239 (345)
Q Consensus 211 ~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~s 239 (345)
.||..|..+..+|..++..|..+...|..
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~ 31 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRA 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666554444444443
No 434
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=41.23 E-value=55 Score=34.22 Aligned_cols=71 Identities=18% Similarity=0.245 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019163 200 ERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATGQI 279 (345)
Q Consensus 200 eRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~gei 279 (345)
.|-..-|.|||.++..+..+... ..++..|+.....+... ++.++.-..++ ...+.+++|++.++....+.
T Consensus 318 WrT~~Ii~ELe~Ei~~~~~~~~~-~~~l~~L~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 388 (448)
T PF05761_consen 318 WRTAAIIPELEQEIEIWNSKKYR-FEELQELEELLEELQDH-------LDQLRSSSELR-PDISELRKERRELRREMKEL 388 (448)
T ss_dssp SEEEEE-TTHHHHHHHHHHTHHH-HHHHHHHHHHCHHHHCH-------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCT
T ss_pred eEEEEEehhhhhhhhhhhhcchh-hhHHHHHHHHHHHHHHH-------hcccccchhhH-HHHHHHHHHHHHHHHHHhhh
Confidence 33444466666666655443322 22244433333333332 22222222333 33455667777887776543
No 435
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=41.16 E-value=3.2e+02 Score=25.99 Aligned_cols=69 Identities=20% Similarity=0.320 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019163 209 LERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATG 277 (345)
Q Consensus 209 LE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~g 277 (345)
+|+.+..-+.....|...+...+.+-..+...-...+..+++|+.+..-..+.-..|...|..|.....
T Consensus 117 ~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~ 185 (192)
T PF11180_consen 117 LERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQAN 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444444555555555555555555566666666666665544333444456666767766543
No 436
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=41.04 E-value=1.5e+02 Score=25.30 Aligned_cols=38 Identities=29% Similarity=0.237 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 221 TTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLR 258 (345)
Q Consensus 221 ~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~Lr 258 (345)
..+...+..++.+...+..||..|+.+-..++.+...-
T Consensus 46 ~~~~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L 83 (117)
T COG2919 46 KNGAADVLQLQRQIAAQQAELEKLSARNTALEAEIKDL 83 (117)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33555666777778888888888888888887765443
No 437
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=41.03 E-value=59 Score=28.16 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHHHHHH
Q 019163 234 TTGLTAENKELKLRLQA 250 (345)
Q Consensus 234 ~~~L~sEN~eLK~RLQa 250 (345)
...|+.||+-||.+++.
T Consensus 81 ~~~LeEENNlLklKiev 97 (108)
T cd07429 81 NQQLEEENNLLKLKIEV 97 (108)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444555555554433
No 438
>PRK10963 hypothetical protein; Provisional
Probab=40.74 E-value=94 Score=29.08 Aligned_cols=46 Identities=20% Similarity=0.297 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQA 255 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~ 255 (345)
|+=.|++++.|+.+|..|..++..|-. ...+|..+-.++..+....
T Consensus 39 VSL~ErQ~~~LR~r~~~Le~~l~~Li~----~A~~Ne~l~~~~~~l~l~L 84 (223)
T PRK10963 39 VSLVEWQMARQRNHIHVLEEEMTLLME----QAIANEDLFYRLLPLQSRL 84 (223)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 455677888888888888888876544 5677887777777777653
No 439
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=40.48 E-value=4e+02 Score=26.87 Aligned_cols=88 Identities=24% Similarity=0.391 Sum_probs=51.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 019163 183 KRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQA-HLRDAL 261 (345)
Q Consensus 183 KR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~-~Lrdal 261 (345)
+..|.-+.+..++.+++.. +|-.+|..+.....+|..+-..+..+...+..+-.++-.+++.+-..+ .+++..
T Consensus 26 ~ekR~El~~~~~~~~ekRd------eln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~ 99 (294)
T COG1340 26 KEKRDELRKEASELAEKRD------ELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKR 99 (294)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344566777777776654 455555555555555655555555555566666666666665554442 233333
Q ss_pred H---------HHHHHHHHHHHHHh
Q 019163 262 N---------EALREEVQRLKIAT 276 (345)
Q Consensus 262 N---------E~L~eEV~rLk~a~ 276 (345)
+ ..|+.++++|....
T Consensus 100 ~~~~~~~~~~~~ler~i~~Le~~~ 123 (294)
T COG1340 100 NEFNLGGRSIKSLEREIERLEKKQ 123 (294)
T ss_pred hhhhccCCCHHHHHHHHHHHHHHH
Confidence 4 34678888887654
No 440
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=40.45 E-value=90 Score=31.87 Aligned_cols=14 Identities=14% Similarity=0.373 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 019163 210 ERKVQTLQTEATTL 223 (345)
Q Consensus 210 E~KVq~Lq~EN~~L 223 (345)
+.++..|+.++..|
T Consensus 28 ~~~~~~~~~~~~~~ 41 (398)
T PTZ00454 28 EKELEFLDIQEEYI 41 (398)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 441
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=40.25 E-value=7.4e+02 Score=29.92 Aligned_cols=16 Identities=44% Similarity=0.677 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 019163 209 LERKVQTLQTEATTLS 224 (345)
Q Consensus 209 LE~KVq~Lq~EN~~Ls 224 (345)
|+.+++.+..|...|.
T Consensus 1013 l~~q~~e~~re~~~ld 1028 (1294)
T KOG0962|consen 1013 LERKLKELERELSELD 1028 (1294)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444433333
No 442
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=40.23 E-value=97 Score=33.73 Aligned_cols=18 Identities=28% Similarity=0.174 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 019163 260 ALNEALREEVQRLKIATG 277 (345)
Q Consensus 260 alNE~L~eEV~rLk~a~g 277 (345)
..-+.|++|.++|+..+.
T Consensus 566 ~~l~~L~~En~~L~~~l~ 583 (722)
T PF05557_consen 566 STLEALQAENEDLLARLR 583 (722)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455677788888876663
No 443
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=40.13 E-value=5e+02 Score=27.90 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 019163 198 SKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTA 239 (345)
Q Consensus 198 SReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~s 239 (345)
-++.-+..+..||.++..|......|...+..|..+...+..
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd 339 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSD 339 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 345556666666666666666666666655555554433333
No 444
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=40.11 E-value=38 Score=29.78 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=18.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 227 VTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 227 l~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
++.|..+...|..||+.||.+|..--
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 34455566678889999998875443
No 445
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=39.98 E-value=1.4e+02 Score=30.92 Aligned_cols=31 Identities=16% Similarity=0.148 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhH
Q 019163 205 YTSELERKVQTLQTEATT--LSAQVTMLQRDTT 235 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~--Ls~ql~~Lqr~~~ 235 (345)
-.++|..+|..|++|-.+ +.++++..+..+.
T Consensus 47 EN~~Lk~eVerLE~e~l~s~V~E~vet~dv~~d 79 (420)
T PF07407_consen 47 ENNDLKIEVERLENEMLRSHVCEDVETNDVIYD 79 (420)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 346666666666444433 3344444443333
No 446
>PRK00736 hypothetical protein; Provisional
Probab=39.94 E-value=1.8e+02 Score=22.76 Aligned_cols=24 Identities=13% Similarity=0.230 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 209 LERKVQTLQTEATTLSAQVTMLQR 232 (345)
Q Consensus 209 LE~KVq~Lq~EN~~Ls~ql~~Lqr 232 (345)
+|.++..|+....-+..-|..|..
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~ 26 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSD 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666555555444444333
No 447
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=39.83 E-value=2.4e+02 Score=24.19 Aligned_cols=14 Identities=29% Similarity=0.408 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHh
Q 019163 263 EALREEVQRLKIAT 276 (345)
Q Consensus 263 E~L~eEV~rLk~a~ 276 (345)
..|.+||..++..+
T Consensus 101 ~~le~e~~~~~~r~ 114 (132)
T PF07926_consen 101 EQLEKELSELEQRI 114 (132)
T ss_pred HHHHHHHHHHHHHH
Confidence 34556665555443
No 448
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=39.82 E-value=2.1e+02 Score=28.41 Aligned_cols=27 Identities=11% Similarity=0.164 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 202 KIRYTSELERKVQTLQTEATTLSAQVT 228 (345)
Q Consensus 202 KkqyIeELE~KVq~Lq~EN~~Ls~ql~ 228 (345)
+-+.+.+.+.++..|+.+...+.....
T Consensus 25 ~~~~~~~~~~~~~~l~~~~~~~~~~~~ 51 (378)
T TIGR01554 25 LEKELTAAALEKEELETDVEKLKEEIK 51 (378)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333343344444444444433333
No 449
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=39.80 E-value=2.5e+02 Score=24.20 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=8.8
Q ss_pred CChhHHHHhhccChHHHHHHHHh
Q 019163 169 VDRDRLAELALIDPKRAKRILAN 191 (345)
Q Consensus 169 m~~e~laEla~~DpKR~KRiLsN 191 (345)
++.+.|.+|.. |+.....++.+
T Consensus 4 lS~~eL~~Ll~-d~~~l~~~v~~ 25 (150)
T PF07200_consen 4 LSTEELQELLS-DEEKLDAFVKS 25 (150)
T ss_dssp -TTHHHHHHHH-H-HHHHHHGGG
T ss_pred CCHHHHHHHHc-CHHHHHHHHHc
Confidence 44445555532 34444444443
No 450
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=39.73 E-value=3.7e+02 Score=28.30 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019163 196 ARSKERKIRYTSELERKVQTLQ 217 (345)
Q Consensus 196 rRSReRKkqyIeELE~KVq~Lq 217 (345)
...|.|=...+..-|..++.|+
T Consensus 238 ~~Yk~kA~~iLq~kEklI~~LK 259 (511)
T PF09787_consen 238 QQYKQKAQRILQSKEKLIESLK 259 (511)
T ss_pred HHHHHHHHHHhcCHHHHHHHHH
Confidence 3334333333333333333333
No 451
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=39.62 E-value=3.2e+02 Score=25.52 Aligned_cols=21 Identities=38% Similarity=0.499 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019163 213 VQTLQTEATTLSAQVTMLQRD 233 (345)
Q Consensus 213 Vq~Lq~EN~~Ls~ql~~Lqr~ 233 (345)
...|++|...|..++.+++.+
T Consensus 152 ~~~l~ae~~~l~~~~~~le~e 172 (240)
T PF12795_consen 152 RWLLQAELAALEAQIEMLEQE 172 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 452
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=39.61 E-value=2e+02 Score=30.99 Aligned_cols=13 Identities=46% Similarity=0.785 Sum_probs=9.5
Q ss_pred HHHHHHHHHhcCC
Q 019163 267 EEVQRLKIATGQI 279 (345)
Q Consensus 267 eEV~rLk~a~gei 279 (345)
+||+||...-|++
T Consensus 460 eeverLQ~lkgel 472 (527)
T PF15066_consen 460 EEVERLQQLKGEL 472 (527)
T ss_pred HHHHHHHHHHHHH
Confidence 7788888776654
No 453
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=39.61 E-value=5.3e+02 Score=27.98 Aligned_cols=10 Identities=20% Similarity=0.102 Sum_probs=4.5
Q ss_pred HHhHHHHHHH
Q 019163 189 LANRQSAARS 198 (345)
Q Consensus 189 LsNRESArRS 198 (345)
+.+|.++.+|
T Consensus 173 ~~e~~~~kdS 182 (554)
T KOG4677|consen 173 YSEDWSPKDS 182 (554)
T ss_pred Hhhhcccchh
Confidence 4444444444
No 454
>PRK15396 murein lipoprotein; Provisional
Probab=39.54 E-value=2e+02 Score=23.49 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTM 229 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~ 229 (345)
++|..+|+.|..+...|...+..
T Consensus 28 d~LssqV~~L~~kvdql~~dv~~ 50 (78)
T PRK15396 28 DQLSSDVQTLNAKVDQLSNDVNA 50 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333
No 455
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.46 E-value=3.9e+02 Score=26.38 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019163 208 ELERKVQTLQTEATTLSAQVT 228 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~ql~ 228 (345)
++|.-++.|..--+++...++
T Consensus 59 e~e~l~~~l~etene~~~~ne 79 (246)
T KOG4657|consen 59 ELENLKADLRETENELVKVNE 79 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333343333333433333
No 456
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=39.44 E-value=3.2e+02 Score=27.58 Aligned_cols=41 Identities=29% Similarity=0.312 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHhHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQ-----VTMLQRDTTGLTAENKELKLR 247 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~q-----l~~Lqr~~~~L~sEN~eLK~R 247 (345)
.-|-.|+..|+.||.+|-.+ |..|.-+...-.+.|.+||..
T Consensus 213 K~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkss 258 (330)
T KOG2991|consen 213 KMLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSS 258 (330)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHh
Confidence 35788999999999888663 445555555555555555543
No 457
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=39.39 E-value=5e+02 Score=27.68 Aligned_cols=70 Identities=21% Similarity=0.252 Sum_probs=37.3
Q ss_pred hhHHHHhhccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019163 171 RDRLAELALIDPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKEL 244 (345)
Q Consensus 171 ~e~laEla~~DpKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eL 244 (345)
+++|.+.- +..|=.+.++.+|..-=..|..-+.+--.-.++++.|...+...+...-.++..+++.-..|
T Consensus 243 PeKL~~~l----eemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~~~e~d~~Et~~v~l 312 (446)
T KOG4438|consen 243 PEKLKEAL----EEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKELKALLKKISSDGVEYDSLETKVVEL 312 (446)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 44555432 33445678888988887777775554333344444444444444444443335555444444
No 458
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=39.38 E-value=2.2e+02 Score=23.48 Aligned_cols=53 Identities=19% Similarity=0.238 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 216 LQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIA 275 (345)
Q Consensus 216 Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a 275 (345)
|-.+|..|..+|..-+.+...|..-...|+.+|...- .+|..|..+...++..
T Consensus 3 Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt-------~LnkkLq~~~~~~~~~ 55 (76)
T PF11544_consen 3 LIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYT-------ELNKKLQDQLLNLQRS 55 (76)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhc
Confidence 3345566666665555555544444444444443333 5666666666555553
No 459
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=39.37 E-value=1.7e+02 Score=29.04 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019163 202 KIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQ 249 (345)
Q Consensus 202 KkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQ 249 (345)
....+.+.+.++..++.+...|..++.....+...|..+-...+.+|.
T Consensus 233 ~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~ 280 (344)
T PF12777_consen 233 AEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLE 280 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 334444444455555555555555555555555555555554444443
No 460
>PHA03011 hypothetical protein; Provisional
Probab=39.25 E-value=2.5e+02 Score=24.57 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQ 231 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lq 231 (345)
+++|-.+...|-.|-.-+..++..++
T Consensus 66 ldeL~~qYN~L~dEYn~i~Ne~k~~~ 91 (120)
T PHA03011 66 LDELIAQYNELLDEYNLIENEIKDLE 91 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555444433
No 461
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=39.21 E-value=3.7e+02 Score=26.04 Aligned_cols=14 Identities=29% Similarity=0.560 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHH
Q 019163 262 NEALREEVQRLKIA 275 (345)
Q Consensus 262 NE~L~eEV~rLk~a 275 (345)
++....++..|...
T Consensus 279 ~e~~~~~~~~l~~e 292 (297)
T PF02841_consen 279 KEGFQEEAEKLQKE 292 (297)
T ss_dssp HCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44455666666544
No 462
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=39.18 E-value=2.7e+02 Score=31.76 Aligned_cols=53 Identities=26% Similarity=0.374 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----H-----------HHHHHHHHHHhHHHHHHHHHHHHHH
Q 019163 196 ARSKERKIRYTSELERKVQTLQTEATT----L-----------SAQVTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 196 rRSReRKkqyIeELE~KVq~Lq~EN~~----L-----------s~ql~~Lqr~~~~L~sEN~eLK~RL 248 (345)
+|.=.+-.++++|+|+++.-|+.|..+ + -.++..++.+...+++|-.++..--
T Consensus 48 QR~fv~evrRcdemeRklrfl~~ei~k~~i~~~~~~~~~~~p~~~~i~dle~~l~klE~el~eln~n~ 115 (829)
T KOG2189|consen 48 QRKFVNEVRRCDEMERKLRFLESEIKKAGIPLPDLDESPPAPPPREIIDLEEQLEKLESELRELNANK 115 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhH
Confidence 344445566677777777777777665 1 3444555555555555555544333
No 463
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=39.07 E-value=5.1e+02 Score=27.63 Aligned_cols=15 Identities=27% Similarity=0.481 Sum_probs=5.4
Q ss_pred HHHHhHHHHHHHHHH
Q 019163 230 LQRDTTGLTAENKEL 244 (345)
Q Consensus 230 Lqr~~~~L~sEN~eL 244 (345)
|.++...|....+.|
T Consensus 92 Lekr~e~Lekre~~L 106 (514)
T TIGR03319 92 LDRKMESLDKKEENL 106 (514)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 464
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=39.06 E-value=4.9e+02 Score=27.54 Aligned_cols=94 Identities=18% Similarity=0.325 Sum_probs=40.9
Q ss_pred ccChHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019163 179 LIDPKRAKRILANRQSAARSKERKIR-YTSELERKVQTLQTEATTLSA---QVTMLQRDTTGLTAENKELKLRLQAMEQQ 254 (345)
Q Consensus 179 ~~DpKR~KRiLsNRESArRSReRKkq-yIeELE~KVq~Lq~EN~~Ls~---ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq 254 (345)
..||.++-. +.+|.+.-+.-.||.. -++++-.....++.+...|.. .+..|+.+...+..+-..+-..|.....+
T Consensus 297 ~~dp~~L~e-le~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~ 375 (563)
T TIGR00634 297 EFDPERLNE-IEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRK 375 (563)
T ss_pred CCCHHHHHH-HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346776665 4666666666555543 233333333333333333221 23333333333333333333333333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019163 255 AHLRDALNEALREEVQRLKIA 275 (345)
Q Consensus 255 ~~LrdalNE~L~eEV~rLk~a 275 (345)
+ ...+.+.+.+++..|.+.
T Consensus 376 ~--a~~l~~~v~~~l~~L~m~ 394 (563)
T TIGR00634 376 A--AERLAKRVEQELKALAME 394 (563)
T ss_pred H--HHHHHHHHHHHHHhCCCC
Confidence 1 123444555555555543
No 465
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=39.04 E-value=2e+02 Score=29.55 Aligned_cols=84 Identities=21% Similarity=0.362 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHH--------------------HHHH---HHHHH
Q 019163 213 VQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAH-LRD--------------------ALNE---ALREE 268 (345)
Q Consensus 213 Vq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~-Lrd--------------------alNE---~L~eE 268 (345)
|..||..|.+|..||...++++.-|..-|+.-=..+..|-++.+ |.+ .||| .|..|
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeRE 81 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLERE 81 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777776666666555544432223333333211 000 1333 46688
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCCCCC
Q 019163 269 VQRLKIATGQIPAANGNPFGRGLPPQFP 296 (345)
Q Consensus 269 V~rLk~a~geip~~~~~P~~~~~q~~~~ 296 (345)
+.|-|+.+--|-....|-|--.+.--+|
T Consensus 82 LARaKV~aNRVA~vvANEWKD~nDkvMP 109 (351)
T PF07058_consen 82 LARAKVSANRVATVVANEWKDENDKVMP 109 (351)
T ss_pred HHHhhhhhhhhhhhhcccccccCCcccc
Confidence 8888877655544445556655544333
No 466
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=38.93 E-value=2.6e+02 Score=29.74 Aligned_cols=43 Identities=28% Similarity=0.328 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 019163 195 AARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGL 237 (345)
Q Consensus 195 ArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L 237 (345)
-.-.|.||+.-+++||.-|.--++|..-...+.....++...|
T Consensus 341 ~~~~~~~kk~~~eeLESIVRiKqAEA~MFQ~kAdEARrEAE~L 383 (446)
T PF07227_consen 341 LQFERQRKKPQIEELESIVRIKQAEAKMFQLKADEARREAEGL 383 (446)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999988888877776666666665544
No 467
>PF14661 HAUS6_N: HAUS augmin-like complex subunit 6 N-terminus
Probab=38.84 E-value=3.5e+02 Score=25.67 Aligned_cols=44 Identities=20% Similarity=0.186 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHH
Q 019163 197 RSKERKIRYTSELERKVQT---LQTEATTLSAQVTMLQRDTTGLTAE 240 (345)
Q Consensus 197 RSReRKkqyIeELE~KVq~---Lq~EN~~Ls~ql~~Lqr~~~~L~sE 240 (345)
+...-+..|+..++.++.. ++.....|..++..+.++...+..+
T Consensus 161 ~~~~~r~~~~~~~~~~~~~~~~~~~~aq~L~~k~r~l~~~~~~~~~~ 207 (247)
T PF14661_consen 161 RILAHRNSFLQILQEKDAARQKYQEFAQLLRKKYRELSAECAELQAQ 207 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555555555 5555555555555544444444443
No 468
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=38.81 E-value=3.5e+02 Score=29.19 Aligned_cols=82 Identities=16% Similarity=0.240 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q 019163 195 AARSKERKIRYTSELERKVQTLQTE-------ATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQ--AHLRDALNEAL 265 (345)
Q Consensus 195 ArRSReRKkqyIeELE~KVq~Lq~E-------N~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq--~~LrdalNE~L 265 (345)
++....-+++-+++++.+|..|+.. .....+++..|..+.......-+.++..++....+ .+++ ++..+-
T Consensus 182 ~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~-~lk~ap 260 (555)
T TIGR03545 182 KRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLA-ELKKAP 260 (555)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHhcc
Confidence 3333333455677777777777764 12233344443333333333333333333222211 1112 334444
Q ss_pred HHHHHHHHHHhc
Q 019163 266 REEVQRLKIATG 277 (345)
Q Consensus 266 ~eEV~rLk~a~g 277 (345)
++.+.+|+..++
T Consensus 261 ~~D~~~L~~~~~ 272 (555)
T TIGR03545 261 QNDLKRLENKYA 272 (555)
T ss_pred HhHHHHHHHHhC
Confidence 466777776665
No 469
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=38.81 E-value=5.8e+02 Score=30.11 Aligned_cols=98 Identities=20% Similarity=0.265 Sum_probs=0.0
Q ss_pred ChhHHHHhhccChHHHHHHHHhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH--------------HHHHHH
Q 019163 170 DRDRLAELALIDPKRAKRILANRQSAARSK----------ERKIRYTSELERKVQTLQTE--------------ATTLSA 225 (345)
Q Consensus 170 ~~e~laEla~~DpKR~KRiLsNRESArRSR----------eRKkqyIeELE~KVq~Lq~E--------------N~~Ls~ 225 (345)
+.+.+.|+ =+.+|-+.+.+-.+... .|+++..+..-.+.+.+..+ |..|+.
T Consensus 198 s~~~~~~L-----~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~~~~~i~~~~~~N~~Ls~ 272 (1109)
T PRK10929 198 SANNRQEL-----ARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDLPKSIVAQFKINRELSQ 272 (1109)
T ss_pred ccHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCChHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Q 019163 226 QVTMLQRDTTGLTAENKELKLRLQAMEQQ----------AHLRDALNEALREEVQRL 272 (345)
Q Consensus 226 ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq----------~~LrdalNE~L~eEV~rL 272 (345)
++.....+...+..+|...|..++.+.++ .....+|-+.|.+++++|
T Consensus 273 ~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l~~S~~Lg~~L~~Q~~~L 329 (1109)
T PRK10929 273 ALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWLGVSNALGEALRAQVARL 329 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhC
No 470
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=38.63 E-value=7e+02 Score=29.16 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=13.2
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 019163 183 KRAKRILANRQSAARSKERK 202 (345)
Q Consensus 183 KR~KRiLsNRESArRSReRK 202 (345)
++.-|+|.|+-.-+.+-.-|
T Consensus 105 ~sQiriLQn~c~~lE~ekq~ 124 (1265)
T KOG0976|consen 105 ESQIRILQNKCLRLEMEKQK 124 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67778888886655554433
No 471
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=38.60 E-value=4.1e+02 Score=26.42 Aligned_cols=46 Identities=22% Similarity=0.232 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 019163 202 KIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLR 247 (345)
Q Consensus 202 KkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~R 247 (345)
-++....|......++.|+........-|+.-|..|..+|+.|+..
T Consensus 48 ~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE 93 (309)
T PF09728_consen 48 LQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEE 93 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566777777777777777777777777777788888777754
No 472
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=38.52 E-value=17 Score=33.02 Aligned_cols=34 Identities=26% Similarity=0.276 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHH
Q 019163 211 RKVQTLQTEATTLSAQVTMLQRDT-------TGLTAENKEL 244 (345)
Q Consensus 211 ~KVq~Lq~EN~~Ls~ql~~Lqr~~-------~~L~sEN~eL 244 (345)
..|..|+.||.+|..++...+... ..|..+.++|
T Consensus 29 ~qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~L 69 (181)
T PF09311_consen 29 AQVRRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVKHL 69 (181)
T ss_dssp T----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHH
Confidence 356666666666666655444433 4445555544
No 473
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.43 E-value=1.7e+02 Score=28.78 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 019163 209 LERKVQTLQTEATTLSAQVTMLQRDTTGL 237 (345)
Q Consensus 209 LE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L 237 (345)
|...+..+|.+..+|..++..++......
T Consensus 55 L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~ 83 (247)
T COG3879 55 LVKELRSLQKKVNTLAAEVEDLENKLDSV 83 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433333
No 474
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=38.41 E-value=47 Score=27.19 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019163 235 TGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 235 ~~L~sEN~eLK~RLQaLEq 253 (345)
.+|..||..||.+|+.+|.
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ 21 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEA 21 (76)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888863
No 475
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=38.39 E-value=71 Score=30.07 Aligned_cols=41 Identities=22% Similarity=0.257 Sum_probs=25.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 183 KRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTM 229 (345)
Q Consensus 183 KR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~ 229 (345)
.|.+|..+++ .+..++.+.||+.+|..|+.+...+...+..
T Consensus 91 ~R~~~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~ 131 (181)
T KOG3335|consen 91 WRQARKERKK------EEKRKQEIMELRLKVEKLENAIAELTKFFSQ 131 (181)
T ss_pred HHhhhcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544443 5666677788888888777755555544443
No 476
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=38.36 E-value=3.9e+02 Score=30.43 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=12.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q 019163 225 AQVTMLQRDTTGLTAENKELKLRLQ 249 (345)
Q Consensus 225 ~ql~~Lqr~~~~L~sEN~eLK~RLQ 249 (345)
.+|+.|++....+..|...|+..+.
T Consensus 409 QRva~lEkKvqa~~kERDalr~e~k 433 (961)
T KOG4673|consen 409 QRVATLEKKVQALTKERDALRREQK 433 (961)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3444555555555555555444444
No 477
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=38.16 E-value=1.7e+02 Score=24.12 Aligned_cols=39 Identities=23% Similarity=0.281 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 019163 202 KIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAE 240 (345)
Q Consensus 202 KkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sE 240 (345)
+-.-+..|+.++..|+.+...|..++..++.+...+..+
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~ 99 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEK 99 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566666666666555555555544444444433
No 478
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=38.08 E-value=1.2e+02 Score=32.26 Aligned_cols=64 Identities=20% Similarity=0.197 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHH
Q 019163 190 ANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQR------DTTGLTAENKELKLRLQAMEQQ 254 (345)
Q Consensus 190 sNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr------~~~~L~sEN~eLK~RLQaLEqq 254 (345)
+.+..++.+..++++ ++.||.++..|+.+...|..++..-.- ....+..|-.+++.++..++.+
T Consensus 555 ~~~~~~~~~~~~~~~-~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (635)
T PRK11147 555 VKRSSKKLSYKLQRE-LEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFER 624 (635)
T ss_pred hhhhhhhhchHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHHH
No 479
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=38.07 E-value=74 Score=30.75 Aligned_cols=39 Identities=26% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 019163 200 ERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLT 238 (345)
Q Consensus 200 eRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~ 238 (345)
.|+.+||..|+.+....+.....|..+-..|++++..|.
T Consensus 101 ~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~ 139 (232)
T KOG2483|consen 101 DKALEHIQSLERKSATQQQDIEDLSRENRKLKARLEQLS 139 (232)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 480
>PRK11281 hypothetical protein; Provisional
Probab=37.99 E-value=3e+02 Score=32.35 Aligned_cols=108 Identities=15% Similarity=0.123 Sum_probs=0.0
Q ss_pred hhHHHHhhccChHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 019163 171 RDRLAELALIDPKRAKRILANRQSAARSKERKIRYTSEL----ERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKL 246 (345)
Q Consensus 171 ~e~laEla~~DpKR~KRiLsNRESArRSReRKkqyIeEL----E~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~ 246 (345)
+..+..+-..=++.+.|+-.||.-.+.-+.+-+.-...- +.+...|++|...|..++..++++..+-..-..-++.
T Consensus 148 NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~ 227 (1113)
T PRK11281 148 NSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQK 227 (1113)
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019163 247 RLQAMEQQAHLRDALNEALREEVQRLKIATGQ 278 (345)
Q Consensus 247 RLQaLEqq~~LrdalNE~L~eEV~rLk~a~ge 278 (345)
+.+.+..+....+...+.|.+.+..-|....+
T Consensus 228 q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se 259 (1113)
T PRK11281 228 QRDYLTARIQRLEHQLQLLQEAINSKRLTLSE 259 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>PHA03155 hypothetical protein; Provisional
Probab=37.94 E-value=41 Score=29.53 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH
Q 019163 227 VTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 227 l~~Lqr~~~~L~sEN~eLK~RL 248 (345)
++.|..+...|..||+.||.+|
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl 31 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKL 31 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 482
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=37.88 E-value=4.3e+02 Score=27.99 Aligned_cols=74 Identities=11% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019163 203 IRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIAT 276 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~ 276 (345)
+.++..+...+.............+..|+.....|..|-...|..+..+.+...........|..|+.+++..+
T Consensus 280 ~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 280 QSSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSEL 353 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
No 483
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=37.87 E-value=2e+02 Score=29.56 Aligned_cols=73 Identities=21% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019163 203 IRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIAT 276 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~ 276 (345)
++.+.+|+.+++.++.+..+|...+..+..... ....-.+.+..++.+.............|++++..|+..+
T Consensus 333 ~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l 405 (451)
T PF03961_consen 333 KEKLEELEEELEELKEELEKLKKNLKKLKKLKK-QGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEEL 405 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 484
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=37.83 E-value=3.9e+02 Score=27.08 Aligned_cols=69 Identities=16% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019163 203 IRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATGQ 278 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~ge 278 (345)
+..+.|-|.+++.-++|+.+|+.||.-++++ .++.|=.....+|..-|....++ .|+.=|+-+|..+++
T Consensus 74 kakLkes~~~l~dRetEI~eLksQL~RMrED--WIEEECHRVEAQLALKEARkEIk-----QLkQvieTmrssL~e 142 (305)
T PF15290_consen 74 KAKLKESENRLHDRETEIDELKSQLARMRED--WIEEECHRVEAQLALKEARKEIK-----QLKQVIETMRSSLAE 142 (305)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhch
No 485
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=37.82 E-value=2.9e+02 Score=24.55 Aligned_cols=76 Identities=14% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019163 204 RYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATGQI 279 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~gei 279 (345)
..|+|=..++..|......-...++.+......+..++..++..|...+....-.+..-..++.|...++.....+
T Consensus 56 ~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l 131 (177)
T PF13870_consen 56 EKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKL 131 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=37.73 E-value=5.4e+02 Score=27.56 Aligned_cols=90 Identities=12% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 193 QSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRL 272 (345)
Q Consensus 193 ESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rL 272 (345)
..-.+++.+=.+.+..|+........-+..|..++..|..+.........++..-...|+.+..-+......|++.-+.|
T Consensus 78 ~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~r~~~~~~l~~~~~~l 157 (779)
T PRK11091 78 EQLEESRQRLSRLVAKLEEMRERDLELNVQLKDNIAQLNQEIAEREKAEEARQEAFEQLKNEIKEREETQIELEQQSSLL 157 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhcCCCCC
Q 019163 273 KIATGQIPAA 282 (345)
Q Consensus 273 k~a~geip~~ 282 (345)
+..+-.+|++
T Consensus 158 ~~il~~~~~~ 167 (779)
T PRK11091 158 RSFLDASPDL 167 (779)
T ss_pred HHHHhcCcce
No 487
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=37.60 E-value=2.1e+02 Score=22.88 Aligned_cols=50 Identities=16% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAH 256 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~ 256 (345)
.+.+.+-+..+..-+.|...++...++...|...+..|-.+++.|..+..
T Consensus 17 ~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~ 66 (70)
T PF04899_consen 17 QSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLE 66 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=37.51 E-value=5.4e+02 Score=27.46 Aligned_cols=106 Identities=20% Similarity=0.240 Sum_probs=0.0
Q ss_pred hhhccCChhHHHHhhccChHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 019163 164 GVKKAVDRDRLAELALIDPKRAKRILANRQSAARSKERKIRY---TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAE 240 (345)
Q Consensus 164 e~kkim~~e~laEla~~DpKR~KRiLsNRESArRSReRKkqy---IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sE 240 (345)
+++++. +-+++..-..++..+..+.++...+-.+=.+++ -.+|..+=+.|...-..|..+...|.+.-..|...
T Consensus 33 eAe~i~---keA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~k 109 (514)
T TIGR03319 33 LAKRII---EEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKK 109 (514)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 241 NKELKLRLQAMEQQAHLRDALNEALREEVQRL 272 (345)
Q Consensus 241 N~eLK~RLQaLEqq~~LrdalNE~L~eEV~rL 272 (345)
...|..+...++....-.+.+.+....++++.
T Consensus 110 e~~L~~re~eLee~~~e~~~~~~~~~~~le~~ 141 (514)
T TIGR03319 110 EKELSNKEKNLDEKEEELEELIAEQREELERI 141 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=37.48 E-value=2.4e+02 Score=23.33 Aligned_cols=70 Identities=11% Similarity=0.191 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATGQI 279 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~gei 279 (345)
+..--..++.|+..|.....+...+......|...-..|+.+-..++...+.- +.+.+.|..|...+.++
T Consensus 16 l~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~I----d~Ie~~V~~LE~~v~~L 85 (99)
T PF10046_consen 16 LEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQI----DQIEEQVTELEQTVYEL 85 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
No 490
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=37.36 E-value=2.3e+02 Score=23.27 Aligned_cols=73 Identities=21% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019163 204 RYTSELERKVQTLQTEATTLSAQVT---MLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATGQI 279 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql~---~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~gei 279 (345)
.++..|+..+..|+.-...-..... .++.+...|......|..+|...+..+.-.+..|..+.. +|..+...|
T Consensus 8 ~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~---rL~~a~e~I 83 (89)
T PF13747_consen 8 AALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSR---RLDSAIETI 83 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHH
No 491
>PHA03162 hypothetical protein; Provisional
Probab=37.33 E-value=42 Score=30.23 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH
Q 019163 227 VTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 227 l~~Lqr~~~~L~sEN~eLK~RL 248 (345)
++.|..+...|..||+.||.+|
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 492
>PLN02939 transferase, transferring glycosyl groups
Probab=37.17 E-value=4.7e+02 Score=30.53 Aligned_cols=94 Identities=17% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------
Q 019163 185 AKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTM----------------------------------- 229 (345)
Q Consensus 185 ~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~----------------------------------- 229 (345)
++-..+|=.---..|.+-.+.++..-.+...|+.+.+.|..++..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (977)
T PLN02939 137 IQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGAT 216 (977)
T ss_pred HHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhhhccccchhhHHHHHHHhhhhhccccc
Q ss_pred -------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcCC
Q 019163 230 -------LQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEA----LREEVQRLKIATGQI 279 (345)
Q Consensus 230 -------Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~----L~eEV~rLk~a~gei 279 (345)
|-.++..|..||..||..++.|..+.... +.++. |.+|..-|...+.++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 276 (977)
T PLN02939 217 EGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEV-AETEERVFKLEKERSLLDASLREL 276 (977)
T ss_pred cccccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHH
No 493
>PRK05255 hypothetical protein; Provisional
Probab=37.02 E-value=3.5e+02 Score=25.11 Aligned_cols=103 Identities=21% Similarity=0.298 Sum_probs=0.0
Q ss_pred CChhHHHHhhccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019163 169 VDRDRLAELALIDPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 169 m~~e~laEla~~DpKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 248 (345)
+++..++.+-+.|.=+.-=+.+.|....-.|.|-.+||..|-+.+ ....+...+..+......-......|..--
T Consensus 39 Ls~~ql~~lpL~e~L~~Ai~ea~ri~~~eA~RRqlqyIGKLmR~~-----d~e~I~~al~~~~~~~~~~~~~~h~lE~wR 113 (171)
T PRK05255 39 LSKDQLAKLPLDEDLRDAILEAQRITSHEARRRQLQYIGKLMRNE-----DVEPIRAALDKLKNKHNQETARFHKLERWR 113 (171)
T ss_pred CCHHHHhcCCCCHHHHHHHHHHhhhccchHHHHHHHHHHHHHhhC-----CHHHHHHHHHHHhchhHHHHHHHHHHHHHH
Q ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHh
Q 019163 249 QAMEQ--QAHLRDALNEALREEVQRLKIAT 276 (345)
Q Consensus 249 QaLEq--q~~LrdalNE~L~eEV~rLk~a~ 276 (345)
..|-. ..-|.+.+...=..+++.||..+
T Consensus 114 drLi~~~d~al~e~~~~~P~~DrQ~LRqLi 143 (171)
T PRK05255 114 DRLLAEGDDALTEFLEEYPDADRQQLRQLI 143 (171)
T ss_pred HHHHhCCHHHHHHHHHHCchhhHHHHHHHH
No 494
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=36.97 E-value=8e+02 Score=29.30 Aligned_cols=95 Identities=14% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHH
Q 019163 183 KRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAE----NKELKLRLQAMEQQAHLR 258 (345)
Q Consensus 183 KR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sE----N~eLK~RLQaLEqq~~Lr 258 (345)
............|.+....-++++++++..+...+.+...+..++..+..+...+..- ..+|..+|+.+.+...-.
T Consensus 861 ~~l~~~~~~L~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l 940 (1353)
T TIGR02680 861 HTLEVAVRELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASG 940 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 019163 259 DALNEALREEVQRLKIATG 277 (345)
Q Consensus 259 dalNE~L~eEV~rLk~a~g 277 (345)
...-..+.+++..++...+
T Consensus 941 ~~el~~~~~~~~~a~~~~~ 959 (1353)
T TIGR02680 941 GRELPRLAEALATAEEARG 959 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 495
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=36.97 E-value=3.5e+02 Score=25.20 Aligned_cols=66 Identities=24% Similarity=0.281 Sum_probs=0.0
Q ss_pred hHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHHHHHHhH
Q 019163 191 NRQSAARSKER----KIRYTSELERKVQTLQTEATT-------------------------------LSAQVTMLQRDTT 235 (345)
Q Consensus 191 NRESArRSReR----KkqyIeELE~KVq~Lq~EN~~-------------------------------Ls~ql~~Lqr~~~ 235 (345)
||-+|+=--.. +++|-++++.-.+.=...+.. |..++..++....
T Consensus 42 ~rt~aac~fRwNs~vrk~Yee~I~~AKK~Rke~kr~l~~~~~~~~~~~~~~~~~~~~~~~~it~~~v~~~e~~kl~~~~e 121 (170)
T PRK13923 42 KRTAAACGFRWNSVVRKQYQEQIKLAKKERKELRRQLGFSPSNLPDNVKTGDEIITSGISDLTLEDVLSEQIGKLQEEEE 121 (170)
T ss_pred hhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHhhccccCCCccccccccccccccCCcccCCHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019163 236 GLTAENKELKLRLQAMEQQAH 256 (345)
Q Consensus 236 ~L~sEN~eLK~RLQaLEqq~~ 256 (345)
.|..+|..|+.+...++....
T Consensus 122 ~L~~e~~~L~~~~~~~~eDy~ 142 (170)
T PRK13923 122 KLSWENQTLKQELAITEEDYR 142 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 496
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=36.97 E-value=1.4e+02 Score=31.86 Aligned_cols=58 Identities=21% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019163 221 TTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATGQ 278 (345)
Q Consensus 221 ~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~ge 278 (345)
..|...+..|++++..|+..+++|++|+........-...+...+..|-+.-+.+.++
T Consensus 409 ~el~e~le~Lq~Q~eeL~e~~n~l~qrI~eer~~v~~lkql~~~~q~e~t~ak~~~qe 466 (514)
T KOG4370|consen 409 EELQEILELLQRQNEELEEKVNHLNQRIAEERERVIELKQLVNLLQEENTNAKQQFQE 466 (514)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcc
No 497
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=36.95 E-value=98 Score=28.79 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 019163 203 IRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTA 239 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~s 239 (345)
.+++..|+.+...|+.++..|..+....+.+|..|..
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~ 146 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIV 146 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=36.93 E-value=5.6e+02 Score=27.47 Aligned_cols=87 Identities=16% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 184 RAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNE 263 (345)
Q Consensus 184 R~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE 263 (345)
+.++-+..+..+.+.+.. ++.+++.+.+.+..+...+..++..++.+...+.+.... .-...+.+..+.+...+
T Consensus 36 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~---~~~~~~ek~~~l~~~~~ 109 (475)
T PRK10361 36 AEREEMVAELSAAKQQIT---QSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEA---AQQHADDKIRQMINSEQ 109 (475)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHh
Q 019163 264 ALREEVQRLKIAT 276 (345)
Q Consensus 264 ~L~eEV~rLk~a~ 276 (345)
.|+.|.+.|...+
T Consensus 110 ~L~~~F~~LA~~i 122 (475)
T PRK10361 110 RLSEQFENLANRI 122 (475)
T ss_pred HHHHHHHHHHHHH
No 499
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=36.75 E-value=43 Score=37.97 Aligned_cols=76 Identities=28% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019163 204 RYTSELERKVQTLQTEATTLSA-----QVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATGQ 278 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~-----ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~ge 278 (345)
+||.+++.++.+|+.|...++- ++..|+..+..+..+|-.|-.++|..+...++-++-.+-|.++=.+|+.++..
T Consensus 829 kql~eykvey~vLq~El~~~~~~~~~~~~~~lE~~~s~~~~q~~~ll~qlq~~~~~iq~l~~~v~~l~~~e~~~k~~l~~ 908 (948)
T KOG4436|consen 829 KQLAEYKVEYHVLQEELTTSSHLEDLNRIAKLETTNSSLQAQNTDLLEQLQVAELTIQTLERYVEQLLEHENKLKRALQT 908 (948)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhcccccccccchhhhHhhhhhhhhhhccccchhhHHHHHhhhhhcchHHHHHHHhc
Q ss_pred C
Q 019163 279 I 279 (345)
Q Consensus 279 i 279 (345)
+
T Consensus 909 l 909 (948)
T KOG4436|consen 909 L 909 (948)
T ss_pred c
No 500
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=36.72 E-value=62 Score=35.19 Aligned_cols=92 Identities=23% Similarity=0.257 Sum_probs=0.0
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHH
Q 019163 181 DPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTA-------ENKELKLRLQAMEQ 253 (345)
Q Consensus 181 DpKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~s-------EN~eLK~RLQaLEq 253 (345)
|.+|.+++-.-=.--...+......|.+|+..+..+...+..+...+..+......-.. +...|+.++..|+.
T Consensus 438 ~~~~~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~ 517 (722)
T PF05557_consen 438 DTQRIKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELER 517 (722)
T ss_dssp --------------------------------------------------------HHCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019163 254 QAHLRDALNEALREEVQRL 272 (345)
Q Consensus 254 q~~LrdalNE~L~eEV~rL 272 (345)
+.......++.|+.+|.++
T Consensus 518 e~~~L~~~~~~Le~~l~~~ 536 (722)
T PF05557_consen 518 ENERLRQELEELESELEKL 536 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Done!