Query 019163
Match_columns 345
No_of_seqs 229 out of 787
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 11:52:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019163.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019163hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.5 3.3E-14 1.1E-18 105.6 6.9 52 183-234 1-52 (55)
2 2wt7_A Proto-oncogene protein 99.3 1.4E-11 4.8E-16 93.2 9.5 56 182-237 1-56 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.2 3.7E-11 1.3E-15 90.0 8.9 55 183-237 1-55 (61)
4 1jnm_A Proto-oncogene C-JUN; B 99.1 1.9E-10 6.6E-15 86.5 7.5 53 183-235 1-53 (62)
5 2dgc_A Protein (GCN4); basic d 99.0 5.6E-10 1.9E-14 84.9 7.1 53 181-234 8-60 (63)
6 1gd2_E Transcription factor PA 98.9 2.4E-09 8.2E-14 83.3 7.2 65 181-245 6-70 (70)
7 1ci6_A Transcription factor AT 98.8 8.1E-09 2.8E-13 78.3 7.3 53 183-235 2-54 (63)
8 1gu4_A CAAT/enhancer binding p 98.4 2E-06 6.8E-11 68.1 9.6 53 180-232 12-64 (78)
9 1hjb_A Ccaat/enhancer binding 98.4 2.6E-06 8.8E-11 68.7 9.9 50 180-229 12-61 (87)
10 3a5t_A Transcription factor MA 98.2 5.1E-08 1.7E-12 81.4 -2.6 59 169-232 28-86 (107)
11 2wt7_B Transcription factor MA 98.2 1.5E-05 5.2E-10 64.7 10.5 70 169-250 18-87 (90)
12 2oqq_A Transcription factor HY 97.3 0.00054 1.9E-08 48.7 6.1 39 203-248 2-40 (42)
13 2jee_A YIIU; FTSZ, septum, coi 96.2 0.041 1.4E-06 43.9 10.1 49 204-252 6-54 (81)
14 1skn_P DNA-binding domain of S 96.1 0.00059 2E-08 55.6 -1.3 50 163-212 42-91 (92)
15 2w6a_A ARF GTPase-activating p 93.4 0.31 1E-05 37.2 7.3 39 207-245 23-61 (63)
16 3oja_B Anopheles plasmodium-re 93.4 1.4 4.8E-05 43.4 14.2 68 209-276 514-581 (597)
17 3s4r_A Vimentin; alpha-helix, 93.3 1.7 5.8E-05 34.8 12.0 65 210-274 22-91 (93)
18 3hnw_A Uncharacterized protein 92.8 0.88 3E-05 38.9 10.4 54 201-254 72-125 (138)
19 3oja_B Anopheles plasmodium-re 92.7 2.7 9.4E-05 41.3 15.1 72 207-278 505-576 (597)
20 3cve_A Homer protein homolog 1 91.9 2.7 9.3E-05 32.8 11.1 52 207-258 3-54 (72)
21 3a7p_A Autophagy protein 16; c 91.7 2.9 9.8E-05 36.8 12.3 41 208-248 93-133 (152)
22 3cvf_A Homer-3, homer protein 91.6 1.4 4.7E-05 34.9 9.3 53 206-258 8-60 (79)
23 2jee_A YIIU; FTSZ, septum, coi 91.6 1.1 3.8E-05 35.7 8.7 47 206-252 22-68 (81)
24 3ol1_A Vimentin; structural ge 91.2 4.1 0.00014 33.7 12.3 11 263-273 93-103 (119)
25 3o0z_A RHO-associated protein 91.0 8.2 0.00028 34.4 15.0 74 188-269 74-156 (168)
26 3efg_A Protein SLYX homolog; x 90.6 0.63 2.2E-05 36.4 6.4 49 204-252 14-62 (78)
27 2dfs_A Myosin-5A; myosin-V, in 90.4 2.1 7.3E-05 47.0 12.5 15 230-244 996-1010(1080)
28 1hjb_A Ccaat/enhancer binding 90.3 2.5 8.5E-05 33.9 9.8 42 228-283 39-80 (87)
29 4ath_A MITF, microphthalmia-as 90.1 1.2 4E-05 35.7 7.6 44 203-257 38-81 (83)
30 3swy_A Cyclic nucleotide-gated 89.6 1.8 6.3E-05 31.1 7.6 44 208-254 2-45 (46)
31 2v66_B Nuclear distribution pr 88.8 5.9 0.0002 33.1 11.3 48 206-253 37-84 (111)
32 1gu4_A CAAT/enhancer binding p 88.8 3.4 0.00012 32.4 9.3 39 228-280 39-77 (78)
33 3s9g_A Protein hexim1; cyclin 88.7 2 6.8E-05 35.6 8.2 19 207-225 40-58 (104)
34 2dfs_A Myosin-5A; myosin-V, in 88.7 10 0.00034 41.8 16.1 17 236-252 1027-1043(1080)
35 3cvf_A Homer-3, homer protein 88.5 0.86 2.9E-05 36.1 5.7 51 216-273 4-54 (79)
36 3hnw_A Uncharacterized protein 88.4 4.2 0.00014 34.7 10.4 51 203-253 81-131 (138)
37 1go4_E MAD1 (mitotic arrest de 88.3 3.2 0.00011 34.2 9.2 69 205-280 13-95 (100)
38 2v71_A Nuclear distribution pr 87.8 8.3 0.00028 34.8 12.5 28 227-254 90-117 (189)
39 3swf_A CGMP-gated cation chann 87.3 2.1 7E-05 33.7 7.1 46 207-255 3-48 (74)
40 3o0z_A RHO-associated protein 87.3 14 0.00047 32.9 13.4 50 193-244 25-74 (168)
41 3a7p_A Autophagy protein 16; c 86.8 8.8 0.0003 33.8 11.7 50 205-254 69-118 (152)
42 1deb_A APC protein, adenomatou 86.8 4.1 0.00014 30.1 8.0 40 206-245 5-44 (54)
43 3he5_A Synzip1; heterodimeric 86.7 3.7 0.00013 29.4 7.5 22 205-226 4-25 (49)
44 3qh9_A Liprin-beta-2; coiled-c 86.5 7.9 0.00027 30.9 10.2 63 207-269 15-77 (81)
45 3m48_A General control protein 85.5 0.93 3.2E-05 30.7 3.7 27 206-232 2-28 (33)
46 2oxj_A Hybrid alpha/beta pepti 85.5 1.1 3.7E-05 30.5 4.1 28 205-232 2-29 (34)
47 3vkg_A Dynein heavy chain, cyt 85.0 4 0.00014 49.8 11.3 61 210-270 2027-2087(3245)
48 3na7_A HP0958; flagellar bioge 84.8 23 0.00077 32.2 16.0 7 266-272 156-162 (256)
49 1kd8_B GABH BLL, GCN4 acid bas 84.3 1.7 5.9E-05 29.9 4.7 28 205-232 2-29 (36)
50 3u1c_A Tropomyosin alpha-1 cha 84.2 15 0.00051 29.5 15.3 52 198-249 17-68 (101)
51 1kd8_A GABH AIV, GCN4 acid bas 83.4 1.2 4.2E-05 30.7 3.6 29 205-233 2-30 (36)
52 3swk_A Vimentin; cytoskeleton, 83.3 9.2 0.00031 30.1 9.3 39 236-274 46-84 (86)
53 1nkp_B MAX protein, MYC proto- 82.8 1.5 5.1E-05 33.7 4.5 26 203-228 46-71 (83)
54 1go4_E MAD1 (mitotic arrest de 82.7 2 7E-05 35.3 5.4 23 206-228 21-43 (100)
55 3cve_A Homer protein homolog 1 82.7 5.3 0.00018 31.1 7.5 40 233-272 8-47 (72)
56 3c3f_A Alpha/beta peptide with 82.6 1.7 5.8E-05 29.6 4.1 28 205-232 2-29 (34)
57 4ati_A MITF, microphthalmia-as 82.4 1.7 5.8E-05 36.1 5.0 71 183-257 36-116 (118)
58 3mq9_A Bone marrow stromal ant 81.8 38 0.0013 32.5 15.4 28 246-273 443-470 (471)
59 3mq7_A Bone marrow stromal ant 81.3 7.6 0.00026 33.0 8.5 39 231-276 70-108 (121)
60 3a7o_A Autophagy protein 16; c 81.3 5.9 0.0002 31.1 7.3 42 212-253 33-74 (75)
61 1i84_S Smooth muscle myosin he 81.1 4.2 0.00015 44.6 8.8 13 236-248 917-929 (1184)
62 1wle_A Seryl-tRNA synthetase; 80.5 40 0.0014 34.1 15.1 65 209-280 82-157 (501)
63 2oqq_A Transcription factor HY 79.9 2.9 0.0001 29.7 4.7 23 205-227 18-40 (42)
64 2hy6_A General control protein 79.7 2.3 7.8E-05 29.0 3.9 28 205-232 2-29 (34)
65 1ses_A Seryl-tRNA synthetase; 79.7 25 0.00085 34.5 13.0 69 204-279 28-104 (421)
66 3c3g_A Alpha/beta peptide with 79.7 3.3 0.00011 28.0 4.7 27 206-232 2-28 (33)
67 2bni_A General control protein 79.7 2.3 7.8E-05 29.0 3.9 28 205-232 2-29 (34)
68 3u59_A Tropomyosin beta chain; 79.2 22 0.00076 28.3 15.3 55 198-252 17-71 (101)
69 3m9b_A Proteasome-associated A 79.1 2.4 8.1E-05 40.0 5.3 12 262-273 84-95 (251)
70 2dq0_A Seryl-tRNA synthetase; 78.4 33 0.0011 34.1 13.6 66 208-280 42-110 (455)
71 4etp_A Kinesin-like protein KA 78.3 6.7 0.00023 38.4 8.5 51 216-273 8-58 (403)
72 3vmx_A Voltage-gated hydrogen 78.2 9.3 0.00032 27.8 7.0 35 210-244 3-37 (48)
73 1uo4_A General control protein 78.2 2.7 9.3E-05 28.6 3.9 28 205-232 2-29 (34)
74 2wq1_A General control protein 78.0 4 0.00014 27.6 4.7 27 206-232 2-28 (33)
75 1fmh_A General control protein 77.4 4.7 0.00016 26.8 4.8 28 206-233 3-30 (33)
76 3u1c_A Tropomyosin alpha-1 cha 77.2 26 0.0009 28.0 15.4 65 203-267 29-93 (101)
77 2yy0_A C-MYC-binding protein; 77.0 4.7 0.00016 29.4 5.3 30 212-248 20-49 (53)
78 3he5_A Synzip1; heterodimeric 76.8 13 0.00045 26.5 7.3 42 228-276 6-47 (49)
79 1t2k_D Cyclic-AMP-dependent tr 76.8 7.7 0.00026 28.3 6.5 27 226-252 23-49 (61)
80 1nlw_A MAD protein, MAX dimeri 76.6 4.7 0.00016 31.3 5.5 31 203-233 46-76 (80)
81 2kz5_A Transcription factor NF 76.2 0.051 1.8E-06 44.2 -5.9 24 182-205 65-88 (91)
82 3ghg_A Fibrinogen alpha chain; 75.6 18 0.00061 37.5 10.8 52 197-248 103-154 (562)
83 2c9l_Y EB1, zebra, BZLF1 trans 75.6 15 0.00051 27.6 7.7 35 189-223 7-41 (63)
84 2ve7_C Kinetochore protein NUF 75.5 7.6 0.00026 35.9 7.5 50 173-222 110-159 (250)
85 3i00_A HIP-I, huntingtin-inter 75.1 36 0.0012 28.5 11.8 28 199-226 35-62 (120)
86 3ghg_A Fibrinogen alpha chain; 74.4 11 0.00039 38.9 9.1 11 266-276 144-154 (562)
87 2ocy_A RAB guanine nucleotide 74.4 39 0.0013 29.6 11.3 47 205-251 45-91 (154)
88 3u06_A Protein claret segregat 74.3 8.8 0.0003 37.8 8.1 53 214-273 6-58 (412)
89 1t6f_A Geminin; coiled-coil, c 74.2 5.8 0.0002 27.4 4.7 28 218-245 7-34 (37)
90 1gd2_E Transcription factor PA 74.2 6.9 0.00023 30.1 5.8 31 222-252 33-63 (70)
91 2oto_A M protein; helical coil 74.0 40 0.0014 28.5 11.4 31 207-237 53-83 (155)
92 2wt7_B Transcription factor MA 73.7 7 0.00024 31.6 6.0 35 235-276 51-85 (90)
93 1wle_A Seryl-tRNA synthetase; 73.5 35 0.0012 34.5 12.4 58 178-238 39-104 (501)
94 1nkp_A C-MYC, MYC proto-oncoge 73.2 7.5 0.00026 30.6 6.0 15 237-251 71-85 (88)
95 3qne_A Seryl-tRNA synthetase, 73.1 28 0.00095 35.3 11.5 65 208-279 44-111 (485)
96 2w83_C C-JUN-amino-terminal ki 73.1 31 0.0011 27.3 9.3 46 209-254 7-59 (77)
97 3tnu_B Keratin, type II cytosk 73.0 24 0.00083 29.1 9.4 28 206-233 45-72 (129)
98 2eqb_B RAB guanine nucleotide 72.6 19 0.00067 29.4 8.4 50 203-252 11-60 (97)
99 1am9_A Srebp-1A, protein (ster 72.3 5.7 0.00019 30.7 5.0 21 204-224 50-70 (82)
100 3m9b_A Proteasome-associated A 72.1 5.2 0.00018 37.6 5.6 40 205-244 55-94 (251)
101 3a2a_A Voltage-gated hydrogen 71.5 10 0.00034 28.5 5.9 35 210-244 10-44 (58)
102 1dip_A Delta-sleep-inducing pe 71.2 4.2 0.00014 32.2 4.0 27 219-245 16-42 (78)
103 2v71_A Nuclear distribution pr 71.1 59 0.002 29.3 15.0 47 206-252 90-136 (189)
104 2v66_B Nuclear distribution pr 71.0 44 0.0015 27.8 14.8 29 226-254 36-64 (111)
105 2zxx_A Geminin; coiled-coil, c 70.9 11 0.00037 29.9 6.3 31 218-248 34-64 (79)
106 3q0x_A Centriole protein; cent 70.8 20 0.0007 33.1 9.2 58 180-243 160-217 (228)
107 3jsv_C NF-kappa-B essential mo 70.7 34 0.0012 27.9 9.4 51 190-240 9-62 (94)
108 3oja_A Leucine-rich immune mol 70.4 52 0.0018 31.6 12.4 30 223-252 433-462 (487)
109 3tnu_A Keratin, type I cytoske 70.1 22 0.00075 29.5 8.5 27 207-233 48-74 (131)
110 2ocy_A RAB guanine nucleotide 70.0 56 0.0019 28.6 15.1 69 209-279 77-148 (154)
111 2dq3_A Seryl-tRNA synthetase; 69.1 28 0.00095 34.2 10.3 65 210-281 43-110 (425)
112 3q8t_A Beclin-1; autophagy, AT 68.7 43 0.0015 26.7 11.5 25 206-230 27-51 (96)
113 1ci6_A Transcription factor AT 68.6 27 0.00093 25.8 7.9 28 226-253 24-51 (63)
114 2dq0_A Seryl-tRNA synthetase; 68.6 42 0.0014 33.4 11.5 32 205-236 32-63 (455)
115 1jcd_A Major outer membrane li 68.5 26 0.00089 25.6 7.5 27 206-232 6-32 (52)
116 3m91_A Proteasome-associated A 68.5 23 0.00078 25.8 7.2 18 208-225 13-30 (51)
117 4emc_A Monopolin complex subun 68.2 20 0.00069 32.5 8.3 45 204-255 13-57 (190)
118 3i00_A HIP-I, huntingtin-inter 68.1 52 0.0018 27.5 10.8 69 204-275 15-83 (120)
119 2yy0_A C-MYC-binding protein; 67.9 9.6 0.00033 27.7 5.1 19 234-252 21-39 (53)
120 2r2v_A GCN4 leucine zipper; co 67.1 7.8 0.00027 26.4 4.1 28 205-232 2-29 (34)
121 4h22_A Leucine-rich repeat fli 66.9 53 0.0018 27.2 11.8 50 180-244 7-56 (103)
122 3s9g_A Protein hexim1; cyclin 66.3 44 0.0015 27.7 9.2 16 229-244 41-56 (104)
123 1jnm_A Proto-oncogene C-JUN; B 65.8 7.2 0.00025 28.6 4.1 27 226-252 23-49 (62)
124 2b9c_A Striated-muscle alpha t 65.6 65 0.0022 27.6 10.9 64 183-252 37-100 (147)
125 1zme_C Proline utilization tra 65.4 5.6 0.00019 28.6 3.4 25 203-227 43-67 (70)
126 2oa5_A Hypothetical protein BQ 65.2 3.4 0.00012 34.6 2.5 24 205-228 9-32 (110)
127 1dip_A Delta-sleep-inducing pe 64.5 5.2 0.00018 31.6 3.3 29 241-276 17-45 (78)
128 1a93_B MAX protein, coiled coi 64.3 9.8 0.00033 25.9 4.2 26 226-251 8-33 (34)
129 2oxj_A Hybrid alpha/beta pepti 63.5 12 0.00042 25.4 4.5 16 262-277 17-32 (34)
130 1nlw_A MAD protein, MAX dimeri 63.3 27 0.00093 27.0 7.2 12 237-248 66-77 (80)
131 2w83_C C-JUN-amino-terminal ki 62.8 13 0.00043 29.5 5.2 34 208-241 34-67 (77)
132 3cl3_D NF-kappa-B essential mo 62.4 14 0.00046 31.8 5.7 17 206-222 32-48 (130)
133 2j5u_A MREC protein; bacterial 62.4 4.4 0.00015 37.3 2.9 38 236-277 23-60 (255)
134 3na7_A HP0958; flagellar bioge 61.7 92 0.0032 28.1 12.9 51 204-254 32-82 (256)
135 3s4r_A Vimentin; alpha-helix, 61.7 50 0.0017 26.2 8.7 22 227-248 58-79 (93)
136 1nkp_A C-MYC, MYC proto-oncoge 61.6 32 0.0011 27.0 7.4 10 262-271 75-84 (88)
137 3lss_A Seryl-tRNA synthetase; 61.5 43 0.0015 33.9 10.2 20 211-230 51-70 (484)
138 3qne_A Seryl-tRNA synthetase, 61.3 38 0.0013 34.3 9.8 36 203-238 32-67 (485)
139 2lw1_A ABC transporter ATP-bin 61.1 55 0.0019 25.3 9.4 25 205-229 23-47 (89)
140 3m48_A General control protein 60.9 12 0.00042 25.3 4.1 17 261-277 15-31 (33)
141 2dgc_A Protein (GCN4); basic d 60.9 14 0.00047 27.6 4.9 17 260-276 44-60 (63)
142 2wuj_A Septum site-determining 60.7 8.6 0.00029 28.1 3.7 27 205-231 28-54 (57)
143 3mq9_A Bone marrow stromal ant 60.3 55 0.0019 31.3 10.4 23 204-226 397-419 (471)
144 1wlq_A Geminin; coiled-coil; 2 60.1 25 0.00084 28.2 6.5 28 218-245 38-65 (83)
145 4etp_A Kinesin-like protein KA 59.5 33 0.0011 33.5 8.7 25 208-232 14-38 (403)
146 1uii_A Geminin; human, DNA rep 59.0 21 0.00073 28.5 6.0 28 218-245 46-73 (83)
147 1ik9_A DNA repair protein XRCC 59.0 1E+02 0.0036 27.8 12.4 28 206-233 141-168 (213)
148 3uux_B Mitochondrial division 58.6 27 0.00092 32.8 7.5 48 205-252 178-225 (242)
149 3bas_A Myosin heavy chain, str 58.4 64 0.0022 25.2 13.1 47 206-252 37-83 (89)
150 3nmd_A CGMP dependent protein 58.0 42 0.0014 26.1 7.3 27 202-228 38-64 (72)
151 3m91_A Proteasome-associated A 58.0 43 0.0015 24.3 7.0 9 264-272 41-49 (51)
152 1joc_A EEA1, early endosomal a 57.7 63 0.0022 26.6 9.0 24 207-230 14-37 (125)
153 3c3f_A Alpha/beta peptide with 57.6 17 0.00058 24.7 4.4 16 262-277 17-32 (34)
154 1f5n_A Interferon-induced guan 57.4 1.8E+02 0.006 30.0 14.8 72 200-276 508-583 (592)
155 1m1j_C Fibrinogen gamma chain; 57.3 1.1E+02 0.0038 30.3 12.1 6 337-342 200-205 (409)
156 2wt7_A Proto-oncogene protein 57.1 55 0.0019 24.0 9.4 28 226-253 24-51 (63)
157 2v4h_A NF-kappa-B essential mo 57.1 85 0.0029 26.2 11.5 46 191-236 32-80 (110)
158 3u59_A Tropomyosin beta chain; 56.9 71 0.0024 25.3 15.4 38 207-244 33-70 (101)
159 3htk_A Structural maintenance 56.2 51 0.0017 23.4 7.9 26 203-228 11-36 (60)
160 3nmd_A CGMP dependent protein 56.0 37 0.0013 26.5 6.7 28 247-274 41-68 (72)
161 1am9_A Srebp-1A, protein (ster 55.6 51 0.0017 25.3 7.6 22 193-214 12-33 (82)
162 2xdj_A Uncharacterized protein 55.1 75 0.0026 25.0 9.1 38 206-243 22-59 (83)
163 1ses_A Seryl-tRNA synthetase; 54.6 56 0.0019 32.0 9.5 49 190-240 9-57 (421)
164 3swk_A Vimentin; cytoskeleton, 54.2 52 0.0018 25.7 7.5 28 206-233 2-29 (86)
165 3vkg_A Dynein heavy chain, cyt 53.9 2.7E+02 0.0093 34.6 16.6 15 201-215 1973-1987(3245)
166 4emc_A Monopolin complex subun 53.7 1.1E+02 0.0038 27.7 10.4 44 205-248 21-64 (190)
167 3c3g_A Alpha/beta peptide with 53.4 22 0.00076 24.0 4.4 16 262-277 16-31 (33)
168 1ic2_A Tropomyosin alpha chain 53.3 73 0.0025 24.3 12.0 43 212-254 14-56 (81)
169 2er8_A Regulatory protein Leu3 52.8 7.4 0.00025 28.2 2.3 21 203-223 48-68 (72)
170 3e98_A GAF domain of unknown f 52.2 69 0.0024 29.3 9.1 48 205-256 66-113 (252)
171 1p9i_A Cortexillin I/GCN4 hybr 52.2 14 0.00049 24.2 3.2 14 236-249 10-23 (31)
172 2efr_A General control protein 51.8 1.2E+02 0.0041 26.4 11.8 36 207-242 73-108 (155)
173 4e61_A Protein BIM1; EB1-like 51.7 87 0.003 25.9 8.7 21 234-254 20-40 (106)
174 4b4t_K 26S protease regulatory 51.5 22 0.00075 35.1 6.0 53 215-274 39-91 (428)
175 3efg_A Protein SLYX homolog; x 51.3 65 0.0022 24.9 7.5 25 208-232 11-35 (78)
176 3m0d_C TNF receptor-associated 51.0 73 0.0025 23.6 9.9 32 202-233 4-35 (65)
177 1dh3_A Transcription factor CR 50.9 23 0.00078 25.7 4.6 25 227-251 24-48 (55)
178 2hy6_A General control protein 50.1 22 0.00074 24.2 3.9 17 262-278 17-33 (34)
179 2j5u_A MREC protein; bacterial 50.0 8 0.00027 35.6 2.5 6 284-289 80-85 (255)
180 2bni_A General control protein 49.7 22 0.00076 24.2 3.9 16 262-277 17-32 (34)
181 3mq7_A Bone marrow stromal ant 49.5 1.2E+02 0.0041 25.7 11.8 10 267-276 92-101 (121)
182 3bbp_D GRIP and coiled-coil do 49.3 15 0.0005 28.7 3.4 12 262-273 52-63 (71)
183 1hlo_A Protein (transcription 49.0 15 0.0005 28.0 3.4 20 204-223 57-76 (80)
184 3tnu_B Keratin, type II cytosk 48.6 1.1E+02 0.0038 25.0 11.5 32 206-237 38-69 (129)
185 3oa7_A Head morphogenesis prot 48.4 59 0.002 29.8 7.9 42 213-254 32-73 (206)
186 1uo4_A General control protein 47.9 29 0.00098 23.6 4.3 16 262-277 17-32 (34)
187 2zqm_A Prefoldin beta subunit 47.6 68 0.0023 25.1 7.3 20 198-217 28-47 (117)
188 3ra3_B P2F; coiled coil domain 47.6 15 0.00051 23.6 2.7 17 216-232 5-21 (28)
189 2wvr_A Geminin; DNA replicatio 46.9 1.2E+02 0.0042 27.8 9.7 31 218-248 115-145 (209)
190 1deq_A Fibrinogen (alpha chain 46.8 45 0.0015 33.2 7.3 47 202-248 111-157 (390)
191 3he4_A Synzip6; heterodimeric 46.2 53 0.0018 24.0 5.8 32 207-238 20-51 (56)
192 3u06_A Protein claret segregat 45.8 55 0.0019 32.2 7.9 24 221-244 6-29 (412)
193 2eqb_B RAB guanine nucleotide 45.8 1.2E+02 0.0042 24.7 11.0 19 208-226 44-62 (97)
194 3bas_A Myosin heavy chain, str 45.4 1.1E+02 0.0036 23.9 12.2 45 204-248 14-58 (89)
195 2oto_A M protein; helical coil 45.2 1.4E+02 0.0047 25.1 11.5 6 261-266 94-99 (155)
196 2wq1_A General control protein 45.1 38 0.0013 22.9 4.5 17 262-278 16-32 (33)
197 2ve7_A Kinetochore protein HEC 45.0 30 0.001 32.8 5.6 42 210-254 184-225 (315)
198 2xu6_A MDV1 coiled coil; prote 44.6 48 0.0016 25.9 5.7 38 207-244 24-61 (72)
199 1nkp_B MAX protein, MYC proto- 43.6 56 0.0019 24.8 6.0 6 240-245 69-74 (83)
200 2wuj_A Septum site-determining 43.5 20 0.00068 26.1 3.3 25 229-253 31-55 (57)
201 3tnu_A Keratin, type I cytoske 43.3 1.4E+02 0.0047 24.6 11.5 31 206-236 40-70 (131)
202 3trt_A Vimentin; cytoskeleton, 43.2 99 0.0034 22.9 8.3 16 237-252 54-69 (77)
203 1lwu_C Fibrinogen gamma chain; 41.8 78 0.0027 30.5 8.0 6 337-342 122-127 (323)
204 1gk6_A Vimentin; intermediate 41.6 74 0.0025 23.2 6.1 34 208-241 4-37 (59)
205 2v4h_A NF-kappa-B essential mo 41.6 1.5E+02 0.0053 24.7 12.0 37 212-248 63-99 (110)
206 1fmh_A General control protein 41.5 35 0.0012 22.7 3.8 26 228-253 4-29 (33)
207 3he5_B Synzip2; heterodimeric 41.2 88 0.003 22.5 6.2 10 265-274 36-45 (52)
208 1ik9_A DNA repair protein XRCC 41.1 73 0.0025 28.8 7.3 40 206-245 134-173 (213)
209 2ve7_C Kinetochore protein NUF 40.7 17 0.00059 33.5 3.2 35 199-233 143-177 (250)
210 2e7s_A RAB guanine nucleotide 40.1 31 0.0011 29.7 4.4 46 206-251 34-79 (135)
211 2xv5_A Lamin-A/C; structural p 39.8 1.3E+02 0.0043 23.2 8.2 14 203-216 11-24 (74)
212 4fla_A Regulation of nuclear P 38.7 1.9E+02 0.0065 24.9 11.4 84 189-272 64-147 (152)
213 1zxa_A CGMP-dependent protein 37.3 50 0.0017 25.3 4.8 32 200-231 21-52 (67)
214 2dnx_A Syntaxin-12; snare, HAB 37.2 1.1E+02 0.0039 25.1 7.4 31 207-237 47-77 (130)
215 3hhm_B NISH2 P85alpha; PI3KCA, 37.0 1.3E+02 0.0043 29.3 8.8 105 182-293 197-309 (373)
216 1fxk_C Protein (prefoldin); ar 37.0 1.2E+02 0.004 24.5 7.3 22 208-229 99-120 (133)
217 3htk_A Structural maintenance 37.0 1.1E+02 0.0037 21.6 8.7 34 207-240 8-41 (60)
218 2xdj_A Uncharacterized protein 36.8 1.5E+02 0.0052 23.2 10.4 31 221-251 23-53 (83)
219 3q8t_A Beclin-1; autophagy, AT 36.8 1.6E+02 0.0054 23.4 13.9 45 207-251 7-51 (96)
220 3plt_A Sphingolipid long chain 36.3 2.2E+02 0.0076 26.4 9.9 58 188-250 98-156 (234)
221 3w03_C DNA repair protein XRCC 36.2 55 0.0019 29.4 5.6 25 204-228 152-176 (184)
222 1jcd_A Major outer membrane li 35.9 1.2E+02 0.0043 22.0 6.6 29 211-239 4-32 (52)
223 3k29_A Putative uncharacterize 35.8 2.4E+02 0.0081 25.2 14.9 45 163-209 19-63 (169)
224 1ic2_A Tropomyosin alpha chain 35.7 1.4E+02 0.0049 22.6 11.0 51 199-249 15-65 (81)
225 2oa5_A Hypothetical protein BQ 35.2 20 0.00069 30.0 2.4 23 228-250 11-33 (110)
226 2i1j_A Moesin; FERM, coiled-co 35.2 65 0.0022 32.9 6.7 40 206-245 337-376 (575)
227 1uii_A Geminin; human, DNA rep 35.0 1.4E+02 0.0048 23.8 7.2 17 237-253 44-60 (83)
228 3he5_B Synzip2; heterodimeric 34.4 1.3E+02 0.0044 21.6 6.3 14 212-225 11-24 (52)
229 2zvf_A Alanyl-tRNA synthetase; 34.2 1.1E+02 0.0038 25.3 7.0 20 209-228 30-49 (171)
230 3ra3_A P1C; coiled coil domain 33.7 66 0.0022 20.6 4.1 17 216-232 5-21 (28)
231 3vmx_A Voltage-gated hydrogen 33.2 1.4E+02 0.0047 21.7 6.7 36 234-276 6-41 (48)
232 3ljm_A Coil Ser L9C; de novo d 33.1 74 0.0025 20.8 4.3 16 208-223 5-20 (31)
233 1uix_A RHO-associated kinase; 32.7 1.7E+02 0.0059 22.6 10.3 32 209-240 2-33 (71)
234 4gkw_A Spindle assembly abnorm 32.6 1.9E+02 0.0066 25.2 8.2 57 206-269 100-156 (167)
235 3vp9_A General transcriptional 32.5 86 0.0029 25.4 5.6 15 263-277 71-85 (92)
236 3gp4_A Transcriptional regulat 32.0 2.2E+02 0.0074 23.5 9.4 31 160-191 41-71 (142)
237 2fxo_A Myosin heavy chain, car 32.0 2.1E+02 0.0072 23.4 14.2 12 265-276 109-120 (129)
238 3w03_C DNA repair protein XRCC 31.9 97 0.0033 27.8 6.5 32 204-235 145-176 (184)
239 4b4t_K 26S protease regulatory 31.6 78 0.0027 31.2 6.4 19 208-226 46-64 (428)
240 2xnx_M M protein, M1-BC1; cell 31.6 13 0.00046 32.4 0.8 71 209-279 64-134 (146)
241 2nrj_A HBL B protein; enteroto 31.5 2.1E+02 0.0073 27.2 9.3 74 201-277 120-193 (346)
242 1fmh_B General control protein 31.4 80 0.0027 20.9 4.3 20 233-252 9-28 (33)
243 1m1j_A Fibrinogen alpha subuni 31.1 1.4E+02 0.0047 30.6 8.0 47 204-250 111-157 (491)
244 1wt6_A Myotonin-protein kinase 30.6 2E+02 0.007 22.8 10.4 14 191-204 14-27 (81)
245 1m1j_C Fibrinogen gamma chain; 30.1 1.4E+02 0.0047 29.6 7.9 6 267-272 126-131 (409)
246 1a93_B MAX protein, coiled coi 30.0 77 0.0026 21.5 4.2 7 220-226 16-22 (34)
247 2l5g_B Putative uncharacterize 29.1 1.1E+02 0.0039 21.5 5.1 26 208-233 6-31 (42)
248 2xv5_A Lamin-A/C; structural p 29.0 1.9E+02 0.0067 22.1 7.7 29 208-236 9-37 (74)
249 1gk7_A Vimentin; intermediate 28.8 78 0.0027 21.6 4.1 12 235-246 23-34 (39)
250 2e7s_A RAB guanine nucleotide 28.8 67 0.0023 27.6 4.7 65 209-275 65-132 (135)
251 4e61_A Protein BIM1; EB1-like 28.7 2.5E+02 0.0085 23.2 8.7 24 219-242 19-42 (106)
252 1s1c_X RHO-associated, coiled- 28.7 2E+02 0.0069 22.2 10.4 31 208-238 3-33 (71)
253 3trt_A Vimentin; cytoskeleton, 28.6 1.8E+02 0.0061 21.5 9.3 39 206-244 37-75 (77)
254 1f5n_A Interferon-induced guan 28.4 5E+02 0.017 26.6 13.9 8 187-194 463-470 (592)
255 3he4_B Synzip5; heterodimeric 28.4 1.6E+02 0.0053 20.8 5.8 12 204-215 10-21 (46)
256 2efr_A General control protein 28.3 2.9E+02 0.01 23.9 15.7 12 262-273 142-153 (155)
257 2i1j_A Moesin; FERM, coiled-co 28.2 34 0.0012 34.9 3.2 21 249-269 422-442 (575)
258 1deq_A Fibrinogen (alpha chain 28.2 4.6E+02 0.016 26.1 13.5 10 223-232 118-127 (390)
259 3mtu_A Tropomyosin alpha-1 cha 28.0 2E+02 0.0068 21.9 7.6 45 206-250 4-48 (75)
260 3uux_B Mitochondrial division 27.3 3.9E+02 0.013 25.0 12.0 46 206-258 165-210 (242)
261 4ani_A Protein GRPE; chaperone 27.2 2.4E+02 0.0082 25.6 8.4 21 206-226 75-95 (213)
262 2akf_A Coronin-1A; coiled coil 26.5 83 0.0028 20.9 3.7 19 209-227 4-22 (32)
263 1gk7_A Vimentin; intermediate 26.5 46 0.0016 22.8 2.7 18 211-228 20-37 (39)
264 1wlq_A Geminin; coiled-coil; 2 26.5 2.2E+02 0.0076 22.7 7.0 14 239-252 38-51 (83)
265 4ath_A MITF, microphthalmia-as 26.4 1.4E+02 0.0047 23.7 5.8 31 203-233 48-78 (83)
266 3ljm_A Coil Ser L9C; de novo d 26.2 1.1E+02 0.0038 20.0 4.2 22 230-251 6-27 (31)
267 4dnd_A Syntaxin-10, SYN10; str 26.2 2.8E+02 0.0095 23.1 8.0 62 211-276 67-128 (130)
268 2dq3_A Seryl-tRNA synthetase; 25.8 1.5E+02 0.005 29.1 7.1 78 204-284 30-110 (425)
269 2zvf_A Alanyl-tRNA synthetase; 25.8 94 0.0032 25.8 5.1 24 222-245 29-52 (171)
270 1m1j_B Fibrinogen beta chain; 25.7 5.3E+02 0.018 26.0 14.2 85 172-261 100-197 (464)
271 3azd_A Short alpha-tropomyosin 25.6 24 0.00083 23.9 1.1 29 205-233 5-33 (37)
272 2aze_A Transcription factor DP 25.3 2E+02 0.0069 25.2 7.2 18 199-216 21-38 (155)
273 3vem_A Helicase protein MOM1; 25.3 3E+02 0.01 23.1 8.4 31 198-228 55-85 (115)
274 3thf_A Protein shroom; coiled- 25.3 2.4E+02 0.0083 25.5 7.9 30 199-228 14-43 (190)
275 3viq_B Mating-type switching p 24.9 2.5E+02 0.0087 22.3 7.1 24 208-231 5-28 (85)
276 2wvr_A Geminin; DNA replicatio 24.8 1.6E+02 0.0054 27.1 6.6 18 237-254 113-130 (209)
277 3ol1_A Vimentin; structural ge 24.6 2.8E+02 0.0097 22.5 15.0 49 223-274 67-115 (119)
278 2odv_A Plectin 1, HD1; plakin 24.4 3.9E+02 0.013 24.1 9.5 34 183-216 103-136 (235)
279 2lz1_A Nuclear factor erythroi 24.2 2.1 7.1E-05 34.8 -5.2 22 183-204 66-87 (90)
280 2fic_A Bridging integrator 1; 24.2 3.6E+02 0.012 23.5 12.6 11 241-251 199-209 (251)
281 3q0x_A Centriole protein; cent 23.8 3.6E+02 0.012 24.8 8.9 39 216-254 169-207 (228)
282 3plt_A Sphingolipid long chain 23.6 4.4E+02 0.015 24.4 13.1 51 183-233 110-160 (234)
283 1lrz_A FEMA, factor essential 23.4 2.5E+02 0.0086 26.7 8.2 24 204-227 247-270 (426)
284 1hwt_C Protein (heme activator 23.4 45 0.0015 24.4 2.3 22 202-223 56-77 (81)
285 2l5g_B Putative uncharacterize 23.3 2E+02 0.0069 20.3 5.8 32 222-253 6-37 (42)
286 3viq_B Mating-type switching p 22.8 2.9E+02 0.0099 22.0 7.9 22 205-226 9-30 (85)
287 1kd8_B GABH BLL, GCN4 acid bas 22.5 1.9E+02 0.0064 19.8 5.0 12 265-276 20-31 (36)
288 1kd8_A GABH AIV, GCN4 acid bas 22.4 1.1E+02 0.0038 20.9 3.9 9 266-274 21-29 (36)
289 3t97_C Nuclear pore glycoprote 22.2 78 0.0027 23.8 3.5 43 226-268 13-55 (64)
290 2p0t_A UPF0307 protein pspto_4 22.2 3E+02 0.01 24.3 7.8 17 196-212 65-81 (176)
291 2gkw_A TNF receptor-associated 22.2 1.4E+02 0.0048 25.5 5.6 15 207-221 3-17 (192)
292 4dk0_A Putative MACA; alpha-ha 22.2 4.4E+02 0.015 23.8 11.7 9 267-275 143-151 (369)
293 1avy_A Fibritin, gpwac M; bact 21.8 2.1E+02 0.007 22.4 5.8 15 267-282 36-50 (74)
294 1hlo_A Protein (transcription 21.7 2E+02 0.0068 21.6 5.8 16 237-252 62-77 (80)
295 2zdi_C Prefoldin subunit alpha 21.5 1.5E+02 0.005 24.7 5.4 21 208-228 109-129 (151)
296 2fxo_A Myosin heavy chain, car 21.5 3.3E+02 0.011 22.2 16.0 46 207-252 65-110 (129)
297 2z5i_A TM, general control pro 21.4 2.3E+02 0.0078 20.3 5.8 18 209-226 10-27 (52)
298 1oxz_A ADP-ribosylation factor 21.1 4.3E+02 0.015 23.4 9.5 55 171-228 35-93 (186)
299 1h7c_A Tubulin-specific chaper 21.1 3.3E+02 0.011 22.0 9.0 11 223-233 50-60 (108)
300 2z5i_A TM, general control pro 20.9 2.4E+02 0.008 20.2 6.1 37 192-228 7-43 (52)
301 2p4w_A Transcriptional regulat 20.9 4.1E+02 0.014 23.0 9.0 18 262-279 167-184 (202)
302 1ytz_T Troponin T; muscle, THI 20.7 3.5E+02 0.012 22.1 10.9 39 195-233 19-64 (107)
303 4b4t_J 26S protease regulatory 20.3 1.1E+02 0.0037 30.1 5.0 9 265-273 58-66 (405)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.50 E-value=3.3e-14 Score=105.63 Aligned_cols=52 Identities=31% Similarity=0.486 Sum_probs=49.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019163 183 KRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDT 234 (345)
Q Consensus 183 KR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~ 234 (345)
||.+|+++||+||++||+||++|+++||.+|..|+.||..|..++..|+..+
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999999999999999887654
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.29 E-value=1.4e-11 Score=93.16 Aligned_cols=56 Identities=25% Similarity=0.398 Sum_probs=50.3
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 019163 182 PKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGL 237 (345)
Q Consensus 182 pKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L 237 (345)
+||.+|+.+||+||++||.||+.|+.+|+.+|..|+.+|..|..+|..|+.++..|
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~L 56 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999988766554443
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.23 E-value=3.7e-11 Score=90.00 Aligned_cols=55 Identities=31% Similarity=0.494 Sum_probs=49.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 019163 183 KRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGL 237 (345)
Q Consensus 183 KR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L 237 (345)
||.+|+.+||++|++||.||++|+.+||.+|..|+.+|..|..+|..|+.++..|
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999999999999999988765544433
No 4
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.10 E-value=1.9e-10 Score=86.45 Aligned_cols=53 Identities=30% Similarity=0.529 Sum_probs=46.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 019163 183 KRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTT 235 (345)
Q Consensus 183 KR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~ 235 (345)
|+.+|..+||+||++||+||++|+.+||.+|..|+.+|..|..++..|+.++.
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788999999999999999999999999999999999999887655433
No 5
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.02 E-value=5.6e-10 Score=84.86 Aligned_cols=53 Identities=34% Similarity=0.478 Sum_probs=43.0
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019163 181 DPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDT 234 (345)
Q Consensus 181 DpKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~ 234 (345)
|+...|| .+||+||+|||+||++|+.+||.+|..|+.+|..|..++..|...+
T Consensus 8 d~~~~KR-~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 8 DPAALKR-ARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp ---CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333 4599999999999999999999999999999999999888876643
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.91 E-value=2.4e-09 Score=83.32 Aligned_cols=65 Identities=25% Similarity=0.255 Sum_probs=54.7
Q ss_pred ChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019163 181 DPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELK 245 (345)
Q Consensus 181 DpKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK 245 (345)
++...||...||.|++..|+||.+||.+||.+|..|+.++..|..++..|...+..|..||..||
T Consensus 6 ~~~~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 6 QEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44557888999999999999999999999999999999998887777777777777777776653
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=98.83 E-value=8.1e-09 Score=78.27 Aligned_cols=53 Identities=19% Similarity=0.340 Sum_probs=42.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 019163 183 KRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTT 235 (345)
Q Consensus 183 KR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~ 235 (345)
|+.+++..||.+|+|+|.||+.++++|+.++..|+.+|..|..+|..|+.++.
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~ 54 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQ 54 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788889999999999999999999999999999999999999887555433
No 8
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.38 E-value=2e-06 Score=68.12 Aligned_cols=53 Identities=23% Similarity=0.223 Sum_probs=44.9
Q ss_pred cChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 180 IDPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQR 232 (345)
Q Consensus 180 ~DpKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr 232 (345)
.|++-..|..+|.++|+|||++++....+++.+|..|+.||..|..+|..|..
T Consensus 12 ~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~ 64 (78)
T 1gu4_A 12 HSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSR 64 (78)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566679999999999999999999999999999999999888775443
No 9
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.35 E-value=2.6e-06 Score=68.74 Aligned_cols=50 Identities=20% Similarity=0.177 Sum_probs=43.2
Q ss_pred cChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 180 IDPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTM 229 (345)
Q Consensus 180 ~DpKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~ 229 (345)
.|++-..|..+|.++|+|||++++....+++.+|..|+.||..|..+|..
T Consensus 12 ~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~ 61 (87)
T 1hjb_A 12 HSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQ 61 (87)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666789999999999999999999999999999988888877664
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.23 E-value=5.1e-08 Score=81.43 Aligned_cols=59 Identities=25% Similarity=0.448 Sum_probs=46.5
Q ss_pred CChhHHHHhhccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 169 VDRDRLAELALIDPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQR 232 (345)
Q Consensus 169 m~~e~laEla~~DpKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr 232 (345)
++.+.+.+| |.+||.++||.+|+.+|.||+..+++||.++..|+.+...|..++..+..
T Consensus 28 Ls~~e~~~l-----K~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~ 86 (107)
T 3a5t_A 28 LSKEEIIQL-----KQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKL 86 (107)
T ss_dssp CCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHH
T ss_pred CCHHHHHHH-----HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555655 99999999999999999999999999998887777766666555544333
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.16 E-value=1.5e-05 Score=64.75 Aligned_cols=70 Identities=23% Similarity=0.380 Sum_probs=53.2
Q ss_pred CChhHHHHhhccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019163 169 VDRDRLAELALIDPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 169 m~~e~laEla~~DpKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 248 (345)
++.+.+..| |-+||-++||.+|+-+|.||...+.+||.++..|+.+...|..++..+ ..|-..+|.+.
T Consensus 18 ls~eev~~l-----Kq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~-------~~e~d~~k~k~ 85 (90)
T 2wt7_B 18 FTKDEVIRL-----KQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRL-------ARERDAYKVKS 85 (90)
T ss_dssp CCHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred CCHHHHHHH-----HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 344555555 899999999999999999999999999999888888777777666554 44455555554
Q ss_pred HH
Q 019163 249 QA 250 (345)
Q Consensus 249 Qa 250 (345)
++
T Consensus 86 ~~ 87 (90)
T 2wt7_B 86 EK 87 (90)
T ss_dssp HT
T ss_pred HH
Confidence 43
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.31 E-value=0.00054 Score=48.71 Aligned_cols=39 Identities=33% Similarity=0.508 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019163 203 IRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 248 (345)
|.|+.+||.+++.|+..|.+|..++..| ..||..|++-|
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstL-------q~EN~mLRqvl 40 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTL-------QNENQMLRHIL 40 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHh
Confidence 5799999999999999999999998874 45666665433
No 13
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.23 E-value=0.041 Score=43.94 Aligned_cols=49 Identities=22% Similarity=0.280 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 204 RYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
.-++.||.||+.+-..+.-|..++..|+.++..|..+|.+++.....+.
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~ 54 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELE 54 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4577888888888887777777777777777777777777655554444
No 14
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=96.07 E-value=0.00059 Score=55.64 Aligned_cols=50 Identities=12% Similarity=0.216 Sum_probs=35.3
Q ss_pred chhhccCChhHHHHhhccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019163 163 DGVKKAVDRDRLAELALIDPKRAKRILANRQSAARSKERKIRYTSELERK 212 (345)
Q Consensus 163 ~e~kkim~~e~laEla~~DpKR~KRiLsNRESArRSReRKkqyIeELE~K 212 (345)
+|.+..+....|.+--...-|.+||..+||.+|+++|.||...+++|+..
T Consensus 42 ~efn~lLk~~~Ls~~Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~~ 91 (92)
T 1skn_P 42 SELQQVLKNESLSEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSHY 91 (92)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcc
Confidence 45555554444444444455899999999999999999999999988753
No 15
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=93.44 E-value=0.31 Score=37.17 Aligned_cols=39 Identities=38% Similarity=0.472 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELK 245 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK 245 (345)
..-|.||+.|..-|..|+.++..+++....|.+||..|+
T Consensus 23 aaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 23 ATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 455889999999999999999999999999999999875
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.40 E-value=1.4 Score=43.41 Aligned_cols=68 Identities=18% Similarity=0.187 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019163 209 LERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIAT 276 (345)
Q Consensus 209 LE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~ 276 (345)
++.+.+.++.++..+..++...++++..+..|..+|+.+++....+...-...+..+++|+..|...+
T Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~ 581 (597)
T 3oja_B 514 LKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKK 581 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444444444555555555555555554444433222233334444444444443
No 17
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=93.28 E-value=1.7 Score=34.83 Aligned_cols=65 Identities=20% Similarity=0.281 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 210 ERKVQTLQTEATTLSAQVTMLQRDTT-----GLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKI 274 (345)
Q Consensus 210 E~KVq~Lq~EN~~Ls~ql~~Lqr~~~-----~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~ 274 (345)
-.||..|+.+|..|..++..++.... ....+-..|+.+|..+.....--+...+-|.+++.++|.
T Consensus 22 IdKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 22 IDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677777788877777777665422 245666666666655554422222344446667777664
No 18
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=92.84 E-value=0.88 Score=38.92 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019163 201 RKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQ 254 (345)
Q Consensus 201 RKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq 254 (345)
+.++.++.|+..+..+..|...|..++..++..+..+..++.+|+.++..|+.+
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~ 125 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKN 125 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456788888888888888888888888888888888877777777776654
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.70 E-value=2.7 Score=41.31 Aligned_cols=72 Identities=17% Similarity=0.184 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATGQ 278 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~ge 278 (345)
+.|+..++.++.+.+.+..++..++++......+-..|+.++..+|....-.....+.|++|++.++..+.+
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~ 576 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQ 576 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 666777777777777777777777777777777777777777788877766666777788888877766554
No 20
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=91.94 E-value=2.7 Score=32.75 Aligned_cols=52 Identities=12% Similarity=0.194 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLR 258 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~Lr 258 (345)
.++..+++.++.+|..|..+|..++.+...-..+-..++..|..+-+....+
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~K 54 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGK 54 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4678889999999999999999999988888877777777776665544333
No 21
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=91.72 E-value=2.9 Score=36.82 Aligned_cols=41 Identities=17% Similarity=0.232 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019163 208 ELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 248 (345)
+-..-++.|+.|...|..++..++.....|..||..|-.|+
T Consensus 93 eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 93 LKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33355667777777788888888888888888888876654
No 22
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=91.64 E-value=1.4 Score=34.94 Aligned_cols=53 Identities=23% Similarity=0.295 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLR 258 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~Lr 258 (345)
.+++..+++.++.+|..|..+|..|+.+...-..+-..++..|..+-+....+
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~K 60 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVS 60 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 35677888888888888888888888888877777777777776665554444
No 23
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=91.57 E-value=1.1 Score=35.72 Aligned_cols=47 Identities=23% Similarity=0.322 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
|.-|.-+|..|+.+|..|..++..+......|..||..|+.......
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq 68 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666666666666667777777665554444
No 24
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=91.23 E-value=4.1 Score=33.72 Aligned_cols=11 Identities=55% Similarity=0.736 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q 019163 263 EALREEVQRLK 273 (345)
Q Consensus 263 E~L~eEV~rLk 273 (345)
+.|++|+.-||
T Consensus 93 esL~eEl~FLK 103 (119)
T 3ol1_A 93 ESLQEEIAFLK 103 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 25
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=90.99 E-value=8.2 Score=34.39 Aligned_cols=74 Identities=23% Similarity=0.355 Sum_probs=48.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---------HHHH
Q 019163 188 ILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQ---------AHLR 258 (345)
Q Consensus 188 iLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq---------~~Lr 258 (345)
+-+-=+.=++.|.+-.+.+.+|+.+|..|+.|...+...+.. +..+|+.|-.+|..+|.+ ..|+
T Consensus 74 LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k-------~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLK 146 (168)
T 3o0z_A 74 LQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEK-------VEGERKEAQDMLNHSEKEKNNLEIDLNYKLK 146 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 333444556777788888888888888888888887777665 555666666666666553 3344
Q ss_pred HHHHHHHHHHH
Q 019163 259 DALNEALREEV 269 (345)
Q Consensus 259 dalNE~L~eEV 269 (345)
++...+..||
T Consensus 147 -alQ~~~eqE~ 156 (168)
T 3o0z_A 147 -SLQQRLEQEV 156 (168)
T ss_dssp -HHHHHHHHHH
T ss_pred -HHHHHHHHHH
Confidence 4444555555
No 26
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=90.58 E-value=0.63 Score=36.43 Aligned_cols=49 Identities=16% Similarity=0.074 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 204 RYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
.+|.+||.++..++.-...|...|..-+++...|..+.+.|..|+..++
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678899999988888888888888777777777666666655555444
No 27
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.39 E-value=2.1 Score=47.02 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=5.5
Q ss_pred HHHHhHHHHHHHHHH
Q 019163 230 LQRDTTGLTAENKEL 244 (345)
Q Consensus 230 Lqr~~~~L~sEN~eL 244 (345)
+++++..+..|+..|
T Consensus 996 l~~~~~~~~ke~~~l 1010 (1080)
T 2dfs_A 996 LRKELHQTQTEKKTI 1010 (1080)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 28
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=90.35 E-value=2.5 Score=33.86 Aligned_cols=42 Identities=29% Similarity=0.349 Sum_probs=26.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 019163 228 TMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATGQIPAAN 283 (345)
Q Consensus 228 ~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~geip~~~ 283 (345)
..++.....|+.||..|+.+|+ .|+.|+..|+..+.++|...
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~--------------~L~~E~~~Lr~ll~~~p~~~ 80 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVE--------------QLSRELSTLRNLFKQLPEPL 80 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHCcHHH
Confidence 4555666777888888766654 45567888888888887753
No 29
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=90.06 E-value=1.2 Score=35.72 Aligned_cols=44 Identities=30% Similarity=0.419 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 203 IRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHL 257 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~L 257 (345)
..||..|..+++.+..+. .+...|+..|..|..|+|.||.+++.
T Consensus 38 vdYI~~Lq~e~~r~~e~e-----------~r~k~le~~n~~l~~riqELE~qa~~ 81 (83)
T 4ath_A 38 VDYIRKLQREQQRAKDLE-----------NRQKKLEHANRHLLLRVQELEMQARA 81 (83)
T ss_dssp HHHHHHHHHTHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 678777766665544333 33456899999999999999998864
No 30
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=89.57 E-value=1.8 Score=31.11 Aligned_cols=44 Identities=32% Similarity=0.439 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019163 208 ELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQ 254 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq 254 (345)
+||.+|..|+.-...|..+++-|..+ ..+-...||+||..||.+
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae---~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAE---YNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhc
Confidence 57777777777777777776665554 344556788999988864
No 31
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=88.81 E-value=5.9 Score=33.10 Aligned_cols=48 Identities=21% Similarity=0.254 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEq 253 (345)
+..|+..+..|...+..|...|-.|+..+..|+...+..-.-|..+|.
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~ 84 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQ 84 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHH
Confidence 344555555555555555555555555555555555554444444443
No 32
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=88.78 E-value=3.4 Score=32.42 Aligned_cols=39 Identities=31% Similarity=0.399 Sum_probs=22.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 019163 228 TMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATGQIP 280 (345)
Q Consensus 228 ~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~geip 280 (345)
..++.....|..||..|+.+|+ .|+.||..|+..+.++|
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~--------------~L~~E~~~Lr~ll~q~p 77 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVE--------------QLSRELSTLRNLFKQLP 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHTTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHCC
Confidence 3455556667777777665554 34467777776666554
No 33
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=88.72 E-value=2 Score=35.65 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSA 225 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ 225 (345)
-+||.++..|+.||..|..
T Consensus 40 l~LE~~~s~le~e~~rlr~ 58 (104)
T 3s9g_A 40 LELEKSLSRMEDENNRLRL 58 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3577777777777776665
No 34
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=88.66 E-value=10 Score=41.80 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019163 236 GLTAENKELKLRLQAME 252 (345)
Q Consensus 236 ~L~sEN~eLK~RLQaLE 252 (345)
.|..||..|++++..|+
T Consensus 1027 ~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1027 ELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555444444
No 35
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=88.47 E-value=0.86 Score=36.14 Aligned_cols=51 Identities=31% Similarity=0.360 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 216 LQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLK 273 (345)
Q Consensus 216 Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk 273 (345)
|++++.++..++. .++.+|.+|+.+|+.++++..-.....+.++.||.++-
T Consensus 4 l~~e~e~~~~klq-------~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~ 54 (79)
T 3cvf_A 4 MAAEREETQQKVQ-------DLETRNAELEHQLRAMERSLEEARAERERARAEVGRAA 54 (79)
T ss_dssp ------CTTHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555544 56777778888888777654433333455555655543
No 36
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=88.36 E-value=4.2 Score=34.69 Aligned_cols=51 Identities=10% Similarity=0.148 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019163 203 IRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEq 253 (345)
.+-+++++.++..|..+...+..++..+.++...|..++++|..++..||.
T Consensus 81 ~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 81 SLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666677777777777777666666653
No 37
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=88.27 E-value=3.2 Score=34.15 Aligned_cols=69 Identities=23% Similarity=0.295 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKL--------------RLQAMEQQAHLRDALNEALREEVQ 270 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~--------------RLQaLEqq~~LrdalNE~L~eEV~ 270 (345)
-+..|..+|..|+.||..|..++..|+-+... ..|+- -..+.-.+ +.+ ...+.|++|++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~-----~~l~Gd~~~~~TKVlH~~~NPa~~a~~-~~~-~~~e~Lq~E~e 85 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER-----RALQGDYDQSRTKVLHMSLNPTSVARQ-RLR-EDHSQLQAECE 85 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----SSCCSCCCTTTEEEEEESSCHHHHHHH-HHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhccccCCccCeeeeecCChHHHHHH-HHH-HHHHHHHHHHH
Confidence 45677777777777777777777766554322 11100 00011100 111 33567889999
Q ss_pred HHHHHhcCCC
Q 019163 271 RLKIATGQIP 280 (345)
Q Consensus 271 rLk~a~geip 280 (345)
+||..+..+-
T Consensus 86 rLr~~v~~lE 95 (100)
T 1go4_E 86 RLRGLLRAME 95 (100)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHHHh
Confidence 9998876553
No 38
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=87.84 E-value=8.3 Score=34.84 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=16.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019163 227 VTMLQRDTTGLTAENKELKLRLQAMEQQ 254 (345)
Q Consensus 227 l~~Lqr~~~~L~sEN~eLK~RLQaLEqq 254 (345)
++.|+.+...|...+..|+.+|..||+.
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~ 117 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQA 117 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555556666666666666666653
No 39
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=87.33 E-value=2.1 Score=33.72 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQA 255 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~ 255 (345)
++||.+|..|+.-...|..+++.|..+ ..+-...||+||..||.+.
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaE---y~ssQ~KLKqRit~LE~~~ 48 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAE---YESMQQKLKQRLTKVEKFL 48 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 467788888777777777777665555 4445567899999999743
No 40
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=87.27 E-value=14 Score=32.92 Aligned_cols=50 Identities=16% Similarity=0.290 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019163 193 QSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKEL 244 (345)
Q Consensus 193 ESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eL 244 (345)
++=.--|.||.. .||...++.++..+..|...+..|+.....|..+...|
T Consensus 25 EsE~~~rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~L 74 (168)
T 3o0z_A 25 ESDTAVRLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQL 74 (168)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455554 44555555555555555555555555444444444443
No 41
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=86.80 E-value=8.8 Score=33.77 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQ 254 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq 254 (345)
-|..|+..+..|+.++..|...+..-.+.+..|..|.-.|.+++..+|..
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~k 118 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQK 118 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433344444444444444444444433
No 42
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=86.79 E-value=4.1 Score=30.13 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELK 245 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK 245 (345)
.+.|-++|..|..||..|+.++..-..+...|++|-..+|
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mK 44 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMK 44 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHH
Confidence 4678889999999999999998876666666666655554
No 43
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=86.70 E-value=3.7 Score=29.38 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQ 226 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~q 226 (345)
.+..||.+|..|+.||.+|..+
T Consensus 4 lvaqlenevaslenenetlkkk 25 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKK 25 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHh
Confidence 3456666776666666666544
No 44
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=86.52 E-value=7.9 Score=30.90 Aligned_cols=63 Identities=25% Similarity=0.315 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEV 269 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV 269 (345)
++.-.+..-|-.|.+.|+-+|+.++.+....+-.-+.-|..|..|.++...+++..+.|..++
T Consensus 15 ee~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 15 EEKQRKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333344445556666677777776666666666666666777778777777776666565543
No 45
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=85.48 E-value=0.93 Score=30.73 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQR 232 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr 232 (345)
+..||.||..|-.+|..|..++.-|..
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 467999999999999999888876543
No 46
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=85.45 E-value=1.1 Score=30.55 Aligned_cols=28 Identities=29% Similarity=0.217 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQR 232 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr 232 (345)
++..||.||..|-.+|..|..++..|+.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4678999999999988888888776543
No 47
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=85.02 E-value=4 Score=49.83 Aligned_cols=61 Identities=16% Similarity=0.208 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 210 ERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQ 270 (345)
Q Consensus 210 E~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~ 270 (345)
+.+++.++.+..+|.++|+.|+.++..+..|...|+.+++..+......+.|.+.|..|-.
T Consensus 2027 ~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~ 2087 (3245)
T 3vkg_A 2027 KLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERG 2087 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 3444455566666677777777788888888888888888888777777777777765443
No 48
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=84.80 E-value=23 Score=32.16 Aligned_cols=7 Identities=29% Similarity=0.373 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 019163 266 REEVQRL 272 (345)
Q Consensus 266 ~eEV~rL 272 (345)
.+|+..|
T Consensus 156 ~~e~~~l 162 (256)
T 3na7_A 156 KETQQII 162 (256)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444433
No 49
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=84.29 E-value=1.7 Score=29.91 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQR 232 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr 232 (345)
++..||.||..|-.+++.|..++..|+.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4678999999999999988888876554
No 50
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=84.17 E-value=15 Score=29.53 Aligned_cols=52 Identities=12% Similarity=0.194 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019163 198 SKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQ 249 (345)
Q Consensus 198 SReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQ 249 (345)
-+..-....+.++.++..++.++..+..+|..|++.+..|..+-..+..+|.
T Consensus 17 e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 17 DKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555666666666666666666666666665555555554444443
No 51
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=83.45 E-value=1.2 Score=30.66 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQRD 233 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~ 233 (345)
++..||.||..|..+++.|..++..|+.-
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 35689999999999999888888766553
No 52
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=83.31 E-value=9.2 Score=30.11 Aligned_cols=39 Identities=15% Similarity=0.091 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 236 GLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKI 274 (345)
Q Consensus 236 ~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~ 274 (345)
.++++-..||.-+..+....-=-++.-+.|++|+.-||.
T Consensus 46 ~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk 84 (86)
T 3swk_A 46 EAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK 84 (86)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555555544433322233556677778777764
No 53
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=82.79 E-value=1.5 Score=33.75 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 203 IRYTSELERKVQTLQTEATTLSAQVT 228 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~Ls~ql~ 228 (345)
..||..|+.+++.|+.+...|..++.
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~ 71 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNA 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666555554444444333
No 54
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=82.71 E-value=2 Score=35.34 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVT 228 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~ 228 (345)
|+.|+.+...|..++..|..+|.
T Consensus 21 i~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 21 VEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555544
No 55
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=82.65 E-value=5.3 Score=31.10 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=21.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 233 DTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRL 272 (345)
Q Consensus 233 ~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rL 272 (345)
....++.+|.+|+.+++.+++...-.-...+.++.|+.++
T Consensus 8 kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~ 47 (72)
T 3cve_A 8 KLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTL 47 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677777777666654333322344444444443
No 56
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=82.61 E-value=1.7 Score=29.58 Aligned_cols=28 Identities=7% Similarity=0.177 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQR 232 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr 232 (345)
++..||.||..|-.+|..|..++..|+.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4678999999999999988888776543
No 57
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=82.42 E-value=1.7 Score=36.09 Aligned_cols=71 Identities=21% Similarity=0.180 Sum_probs=19.4
Q ss_pred HHHHHHHHhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 183 KRAKRILANRQSAARSK----------ERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 183 KR~KRiLsNRESArRSR----------eRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
||+|-.|..+-.+-++= .=|-.-|..--.-|..|+.++..|.... .+...|..+|..|..+|+.||
T Consensus 36 RrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~----~~~~~l~~~n~~L~~riqeLE 111 (118)
T 4ati_A 36 RRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE----NRQKKLEHANRHLLLRVQELE 111 (118)
T ss_dssp HHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC----C--------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555554431 1133333333344444444444443322 234458889999999999999
Q ss_pred HHHHH
Q 019163 253 QQAHL 257 (345)
Q Consensus 253 qq~~L 257 (345)
.+++.
T Consensus 112 ~~a~~ 116 (118)
T 4ati_A 112 MQARA 116 (118)
T ss_dssp -----
T ss_pred HHHHH
Confidence 87753
No 58
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=81.79 E-value=38 Score=32.49 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 246 LRLQAMEQQAHLRDALNEALREEVQRLK 273 (345)
Q Consensus 246 ~RLQaLEqq~~LrdalNE~L~eEV~rLk 273 (345)
.|++.+|.+..-....-+.++.||.++|
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4666666655444444445557777765
No 59
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=81.34 E-value=7.6 Score=33.00 Aligned_cols=39 Identities=33% Similarity=0.337 Sum_probs=20.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019163 231 QRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIAT 276 (345)
Q Consensus 231 qr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~ 276 (345)
+.....|..|+..|++.|+..+ +.-|.|+.+.+-|...+
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~-------ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDAS-------AEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhchhhhhHh
Confidence 3345556666666655555444 33444555555555444
No 60
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=81.32 E-value=5.9 Score=31.11 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019163 212 KVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 212 KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEq 253 (345)
++..|+....--..-.+.|.-+..++.-||+.|..|++.|.+
T Consensus 33 eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 33 EIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 333343333333334445666677889999999999887764
No 61
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=81.06 E-value=4.2 Score=44.61 Aligned_cols=13 Identities=38% Similarity=0.440 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 019163 236 GLTAENKELKLRL 248 (345)
Q Consensus 236 ~L~sEN~eLK~RL 248 (345)
.+..+..+|+.++
T Consensus 917 ~l~~~~~~Le~~l 929 (1184)
T 1i84_S 917 RLAAKKQELEEIL 929 (1184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 62
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=80.54 E-value=40 Score=34.12 Aligned_cols=65 Identities=17% Similarity=0.249 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019163 209 LERKVQTLQTEATTLSAQVTMLQR-----------DTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATG 277 (345)
Q Consensus 209 LE~KVq~Lq~EN~~Ls~ql~~Lqr-----------~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~g 277 (345)
|..++..|+++.+.++.+|..+.. +...|..+-++|+.+|..++. ....+.+++..+-..++
T Consensus 82 ~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~-------~~~~~~~~l~~~l~~iP 154 (501)
T 1wle_A 82 LREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYP-------KEAQLEEQFYLRALRLP 154 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhCC
Confidence 344455555555666666655432 223455555555555555553 23345555555544444
Q ss_pred CCC
Q 019163 278 QIP 280 (345)
Q Consensus 278 eip 280 (345)
-++
T Consensus 155 N~~ 157 (501)
T 1wle_A 155 NQT 157 (501)
T ss_dssp CCC
T ss_pred CCC
Confidence 433
No 63
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=79.87 E-value=2.9 Score=29.67 Aligned_cols=23 Identities=39% Similarity=0.468 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQV 227 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql 227 (345)
...|||.+|.+|+.||..|+.-+
T Consensus 18 ~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 18 KNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHh
Confidence 45799999999999999887654
No 64
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=79.70 E-value=2.3 Score=28.98 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQR 232 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr 232 (345)
.+..||.+|..|-.+|..|..++..|+.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4568999999999999988888776554
No 65
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=79.70 E-value=25 Score=34.53 Aligned_cols=69 Identities=16% Similarity=0.190 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 204 RYTSELERKVQTLQTEATTLSAQVTMLQRD--------TTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIA 275 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~--------~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a 275 (345)
..|.+|..+...++.+...|.++...+.++ ...|..+-++|+.++..++. ....+.+++..+-..
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 100 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEE-------ALREKEARLEALLLQ 100 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Confidence 444444444444444444444444444433 33455556666666655553 223344555554444
Q ss_pred hcCC
Q 019163 276 TGQI 279 (345)
Q Consensus 276 ~gei 279 (345)
++-+
T Consensus 101 ipN~ 104 (421)
T 1ses_A 101 VPLP 104 (421)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 4433
No 66
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=79.67 E-value=3.3 Score=28.01 Aligned_cols=27 Identities=7% Similarity=0.223 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQR 232 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr 232 (345)
+..||.||..|-.+|..|..++..|+.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 567899999999988888888776543
No 67
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=79.66 E-value=2.3 Score=28.99 Aligned_cols=28 Identities=7% Similarity=0.334 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQR 232 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr 232 (345)
++..||.||..|-.+|..|..++..|+.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4578999999999999988888876543
No 68
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=79.21 E-value=22 Score=28.26 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 198 SKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 198 SReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
-+..-....+.++.++..++.++..+...+..|++.+..|..+-..+..++....
T Consensus 17 e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~ 71 (101)
T 3u59_A 17 DKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQ 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666666666666666666666666665555555544433
No 69
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=79.11 E-value=2.4 Score=39.96 Aligned_cols=12 Identities=67% Similarity=0.678 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHH
Q 019163 262 NEALREEVQRLK 273 (345)
Q Consensus 262 NE~L~eEV~rLk 273 (345)
.+.|++||++|+
T Consensus 84 l~~LkeElerL~ 95 (251)
T 3m9b_A 84 LLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 345677888887
No 70
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=78.43 E-value=33 Score=34.12 Aligned_cols=66 Identities=15% Similarity=0.268 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 019163 208 ELERKVQTLQTEATTLSAQVTMLQRD---TTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATGQIP 280 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~ql~~Lqr~---~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~geip 280 (345)
+|..++..|+.+.+.++.+|..+... ...|..+-++|+.+|..++. ....+.+++..+-..++-++
T Consensus 42 ~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ipN~~ 110 (455)
T 2dq0_A 42 TKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELEN-------EVEELKKKIDYYLWRLPNIT 110 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhCCCCC
Confidence 34445555566666666666554322 34566666677766666663 22344555555544444433
No 71
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=78.28 E-value=6.7 Score=38.40 Aligned_cols=51 Identities=24% Similarity=0.329 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 216 LQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLK 273 (345)
Q Consensus 216 Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk 273 (345)
|+.+...|.+++..|++....+..++.+|+.++...| .+...|..+++.||
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~rr~l~n~~~elk 58 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEE-------TVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHcC
Confidence 3333333334444444444445555566555544433 23344556677776
No 72
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=78.23 E-value=9.3 Score=27.81 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019163 210 ERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKEL 244 (345)
Q Consensus 210 E~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eL 244 (345)
|.++..|..-|..|..+++.|+..+..++.|+..|
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL 37 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERL 37 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 45677777778888888888877777777766554
No 73
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=78.16 E-value=2.7 Score=28.63 Aligned_cols=28 Identities=7% Similarity=0.235 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQR 232 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr 232 (345)
++..||.||..|-.+|..|..++.-|+.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3568999999999999988888876543
No 74
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=77.99 E-value=4 Score=27.62 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQR 232 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr 232 (345)
+..||.||..|-.++..|..++..|+.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567999999999998888888776543
No 75
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=77.43 E-value=4.7 Score=26.81 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRD 233 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~ 233 (345)
+..||.+|...+.||-.|..++..|+.+
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4567777877777777777777766554
No 76
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=77.19 E-value=26 Score=28.03 Aligned_cols=65 Identities=14% Similarity=0.123 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 203 IRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALRE 267 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~e 267 (345)
..-+.+++.+...++.+...|..++..++.++..+...-...+..|...+....-.++.+..|..
T Consensus 29 e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~R 93 (101)
T 3u1c_A 29 EADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNR 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555556666666666665555555555444444444444444333344444443
No 77
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=77.03 E-value=4.7 Score=29.40 Aligned_cols=30 Identities=27% Similarity=0.477 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019163 212 KVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 212 KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 248 (345)
.|..|+.||..|..++. .|..++.+|+.+|
T Consensus 20 d~eaLk~E~~eLk~k~~-------~L~~~~~el~~~l 49 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYE-------AIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 34444444444444443 3445555554444
No 78
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=76.84 E-value=13 Score=26.54 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=26.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019163 228 TMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIAT 276 (345)
Q Consensus 228 ~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~ 276 (345)
..|+.+...|++||..||.+- + +.+ -|...|++||..||..+
T Consensus 6 aqlenevaslenenetlkkkn--l----hkk-dliaylekeianlrkki 47 (49)
T 3he5_A 6 AQLENEVASLENENETLKKKN--L----HKK-DLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--H----HHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHHHhc--c----cHH-HHHHHHHHHHHHHHHHh
Confidence 345566667788888776542 1 112 34456778888888765
No 79
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=76.79 E-value=7.7 Score=28.31 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=17.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 226 QVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 226 ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
.+..|+.....|..+|..|+.++..|+
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~ 49 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLR 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666677777777766555444
No 80
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=76.64 E-value=4.7 Score=31.34 Aligned_cols=31 Identities=16% Similarity=0.127 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 203 IRYTSELERKVQTLQTEATTLSAQVTMLQRD 233 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~ 233 (345)
..||..|+.+...|+.|+..|..++..|..+
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888777777777766665555544443
No 81
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=76.20 E-value=0.051 Score=44.25 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.0
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHH
Q 019163 182 PKRAKRILANRQSAARSKERKIRY 205 (345)
Q Consensus 182 pKR~KRiLsNRESArRSReRKkqy 205 (345)
-+.+||..+||.+|++.|.||...
T Consensus 65 IrdiRRRgKNKvAAqnCRKRKld~ 88 (91)
T 2kz5_A 65 VRDIRRRGKNKVAAQNYRKRKLET 88 (91)
T ss_dssp HHHHHHHHHHHHHTTSCCCCCCCC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHH
Confidence 388999999999999999998653
No 82
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=75.62 E-value=18 Score=37.55 Aligned_cols=52 Identities=13% Similarity=0.312 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019163 197 RSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 197 RSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 248 (345)
.....+.+|-+|||++++.|+.+...-..+|..|+.....+..+-+.|..-|
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666777788888888887777766777777776666665555544333
No 83
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=75.61 E-value=15 Score=27.64 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=23.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 189 LANRQSAARSKERKIRYTSELERKVQTLQTEATTL 223 (345)
Q Consensus 189 LsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~L 223 (345)
-+||.+++++|.|=+..++-...-...-..||..|
T Consensus 7 yknr~asrk~rakfkn~lqh~r~vaaaks~en~rl 41 (63)
T 2c9l_Y 7 YKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRL 41 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHH
Confidence 46999999999998876665554444434444433
No 84
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=75.46 E-value=7.6 Score=35.89 Aligned_cols=50 Identities=14% Similarity=0.083 Sum_probs=33.4
Q ss_pred HHHHhhccChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 173 RLAELALIDPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATT 222 (345)
Q Consensus 173 ~laEla~~DpKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~ 222 (345)
.+..|..-++||.+|+|+-=.-=.|.|+-|..-++++-.+.+.+..+...
T Consensus 110 tl~DL~kP~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~~i~q 159 (250)
T 2ve7_C 110 ETADILCPKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSADKMQQ 159 (250)
T ss_dssp CHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred cHhHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888999999998876666777776666555554444444333333
No 85
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=75.09 E-value=36 Score=28.50 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 199 KERKIRYTSELERKVQTLQTEATTLSAQ 226 (345)
Q Consensus 199 ReRKkqyIeELE~KVq~Lq~EN~~Ls~q 226 (345)
+..-+.||..|+..|..|+.|...-+..
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666655554443
No 86
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=74.42 E-value=11 Score=38.93 Aligned_cols=11 Identities=18% Similarity=0.419 Sum_probs=5.6
Q ss_pred HHHHHHHHHHh
Q 019163 266 REEVQRLKIAT 276 (345)
Q Consensus 266 ~eEV~rLk~a~ 276 (345)
..||+||.+++
T Consensus 144 ~~kIQRLEvDI 154 (562)
T 3ghg_A 144 LVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34555555443
No 87
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=74.41 E-value=39 Score=29.61 Aligned_cols=47 Identities=15% Similarity=0.192 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAM 251 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaL 251 (345)
.+..|+.++.....+...|..++..-.......+.++..+...|..|
T Consensus 45 ~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeL 91 (154)
T 2ocy_A 45 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 91 (154)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666667777776666555555455555555554444433
No 88
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=74.33 E-value=8.8 Score=37.82 Aligned_cols=53 Identities=25% Similarity=0.211 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 214 QTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLK 273 (345)
Q Consensus 214 q~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk 273 (345)
..|+.|..+|.+++..+++....+..|+.+++.+|...+ .+...|..+|+.|+
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~-------~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSN-------MERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhC
Confidence 455566666666666666666667777777766654422 22334555666665
No 89
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=74.24 E-value=5.8 Score=27.38 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019163 218 TEATTLSAQVTMLQRDTTGLTAENKELK 245 (345)
Q Consensus 218 ~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK 245 (345)
.||.+|...|+.-+.+...|..||.+|+
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 5789999999999999999999998874
No 90
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=74.20 E-value=6.9 Score=30.11 Aligned_cols=31 Identities=29% Similarity=0.445 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 222 TLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 222 ~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
.|..+|..|+..+..|..||..|+..+..|.
T Consensus 33 ~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~ 63 (70)
T 1gd2_E 33 ALETQVVTLKELHSSTTLENDQLRQKVRQLE 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555566777777766665554
No 91
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=73.96 E-value=40 Score=28.51 Aligned_cols=31 Identities=29% Similarity=0.365 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGL 237 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L 237 (345)
.+|+.++..|+..|..|..++..+..++..+
T Consensus 53 ~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 53 EELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777777777776666665444
No 92
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=73.66 E-value=7 Score=31.56 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019163 235 TGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIAT 276 (345)
Q Consensus 235 ~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~ 276 (345)
..|+.++..|..+++.|.. .++.+..|+..++..+
T Consensus 51 ~~LE~e~~~L~~e~~~L~~-------e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQ-------EVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 4455566655555544442 2344445555555443
No 93
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=73.45 E-value=35 Score=34.51 Aligned_cols=58 Identities=19% Similarity=0.203 Sum_probs=33.3
Q ss_pred hccChHHHHHHHHhHHHHHH-HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 019163 178 ALIDPKRAKRILANRQSAAR-SKERK-------IRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLT 238 (345)
Q Consensus 178 a~~DpKR~KRiLsNRESArR-SReRK-------kqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~ 238 (345)
.++|-|-+| .|.+..++ .+.|+ ...|.+|..+...|+.+...|.++...+.++...+.
T Consensus 39 pmlD~~~ir---~n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~ 104 (501)
T 1wle_A 39 PLLDMESLC---AYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALV 104 (501)
T ss_dssp CCCCHHHHH---HSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHH---hCHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466766655 46666433 33333 244556666666666666666666666666655443
No 94
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=73.18 E-value=7.5 Score=30.60 Aligned_cols=15 Identities=27% Similarity=0.519 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 019163 237 LTAENKELKLRLQAM 251 (345)
Q Consensus 237 L~sEN~eLK~RLQaL 251 (345)
|..+|..|+.+|+.|
T Consensus 71 L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 71 LRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 344445554454443
No 95
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=73.10 E-value=28 Score=35.32 Aligned_cols=65 Identities=11% Similarity=0.171 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019163 208 ELERKVQTLQTEATTLSAQVTMLQRD---TTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATGQI 279 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~ql~~Lqr~---~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~gei 279 (345)
+|..++..|+++.+.++.+|..+.+. ...|..|-++|+.+|..+|.+. ..+.+++..+-..++-|
T Consensus 44 ~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~-------~~~~~~~~~~l~~iPN~ 111 (485)
T 3qne_A 44 KLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKE-------AEADKNLRSKINQVGNI 111 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhCCCC
Confidence 34455666666666666666655432 3457777777777777777432 23445555544444433
No 96
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=73.08 E-value=31 Score=27.26 Aligned_cols=46 Identities=30% Similarity=0.320 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019163 209 LERKVQTLQTEATTLSAQVT-------MLQRDTTGLTAENKELKLRLQAMEQQ 254 (345)
Q Consensus 209 LE~KVq~Lq~EN~~Ls~ql~-------~Lqr~~~~L~sEN~eLK~RLQaLEqq 254 (345)
+-++|..|-.||.+|.+.-. .|-.+...|..|+..|+..+.++.+.
T Consensus 7 mgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~ 59 (77)
T 2w83_C 7 MGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQA 59 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 44566666667776655332 33344556667777776666666543
No 97
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=73.03 E-value=24 Score=29.08 Aligned_cols=28 Identities=7% Similarity=0.267 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRD 233 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~ 233 (345)
|..|+.++..|...+..|...|..++..
T Consensus 45 iq~L~~el~~l~~~~~~LE~~l~e~e~~ 72 (129)
T 3tnu_B 45 IQRLRAEIDNVKKQCANLQNAIADAEQR 72 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 98
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=72.63 E-value=19 Score=29.42 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 203 IRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
+..|..|+.++.....+...|...+..-.......+.++..+...|..|-
T Consensus 11 re~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 11 KEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777778888877777666666666666666666555443
No 99
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=72.28 E-value=5.7 Score=30.74 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019163 204 RYTSELERKVQTLQTEATTLS 224 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls 224 (345)
.||..|+.+++.|+.|+..|.
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~ 70 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLR 70 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443333333333
No 100
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=72.14 E-value=5.2 Score=37.65 Aligned_cols=40 Identities=18% Similarity=0.273 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKEL 244 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eL 244 (345)
.+.+|+.++..|+..|..|...+..++++...|..|+..|
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556777777777777767666666555555555554443
No 101
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=71.54 E-value=10 Score=28.49 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019163 210 ERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKEL 244 (345)
Q Consensus 210 E~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eL 244 (345)
|.++..|..-|-.|..++..|+..+...+.|+..|
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL 44 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERL 44 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777777766666666544
No 102
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=71.17 E-value=4.2 Score=32.16 Aligned_cols=27 Identities=33% Similarity=0.375 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019163 219 EATTLSAQVTMLQRDTTGLTAENKELK 245 (345)
Q Consensus 219 EN~~Ls~ql~~Lqr~~~~L~sEN~eLK 245 (345)
|...|+.+|..|..++..|+.||+.||
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk 42 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLK 42 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666777777777788888774
No 103
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=71.14 E-value=59 Score=29.27 Aligned_cols=47 Identities=19% Similarity=0.248 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
+..|+..+..|...+..|..+|..|+..+..|+...+.+-.-+..++
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e 136 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFE 136 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHH
Confidence 56666777777777777777777777777766666665544444333
No 104
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=70.95 E-value=44 Score=27.78 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=20.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019163 226 QVTMLQRDTTGLTAENKELKLRLQAMEQQ 254 (345)
Q Consensus 226 ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq 254 (345)
.++.|+.++..|..+|..|+.+|..||+.
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~ 64 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQA 64 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556777777777777777777777765
No 105
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=70.87 E-value=11 Score=29.92 Aligned_cols=31 Identities=23% Similarity=0.272 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019163 218 TEATTLSAQVTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 218 ~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 248 (345)
.||..|..+|..++.+...|..||..|+.-+
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~ 64 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLAEVA 64 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999885433
No 106
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=70.80 E-value=20 Score=33.11 Aligned_cols=58 Identities=16% Similarity=0.218 Sum_probs=43.6
Q ss_pred cChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019163 180 IDPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKE 243 (345)
Q Consensus 180 ~DpKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~e 243 (345)
.++..+|+-|+.|..+-++ .+..|+.+++..+.|++++.++++...+..+.+...-..
T Consensus 160 asde~Ik~yLa~R~~~lK~------kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~ 217 (228)
T 3q0x_A 160 GNDSVVKQFLAFRLSEVKG------TCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDK 217 (228)
T ss_dssp CCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3667888888888877664 457889999999999999999988777765555444333
No 107
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=70.69 E-value=34 Score=27.88 Aligned_cols=51 Identities=16% Similarity=0.155 Sum_probs=36.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHH
Q 019163 190 ANRQSAARSKERKIRYTSELERKVQTLQ---TEATTLSAQVTMLQRDTTGLTAE 240 (345)
Q Consensus 190 sNRESArRSReRKkqyIeELE~KVq~Lq---~EN~~Ls~ql~~Lqr~~~~L~sE 240 (345)
.|-.+|-..=..|+..|++|..++..++ ..+.-|..++.....++..=.+.
T Consensus 9 ~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERad 62 (94)
T 3jsv_C 9 QQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHA 62 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777778888888888888777 55566788888777776554333
No 108
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=70.38 E-value=52 Score=31.64 Aligned_cols=30 Identities=27% Similarity=0.192 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 223 LSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 223 Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
+.+.....+++...|..||..|+..++.+.
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEAD 462 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhhh
Confidence 333333444444444444444444444333
No 109
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=70.11 E-value=22 Score=29.46 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRD 233 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~ 233 (345)
..|+.++..|...+..|...|..++..
T Consensus 48 q~L~~el~~l~~~~~sLE~~l~e~e~~ 74 (131)
T 3tnu_A 48 QNLEIELQSQLSMKASLENSLEETKGR 74 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344444444444444444444444433
No 110
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=70.03 E-value=56 Score=28.58 Aligned_cols=69 Identities=17% Similarity=0.299 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019163 209 LERKVQTLQTEATTLSAQVTMLQRDTTGLTAENK---ELKLRLQAMEQQAHLRDALNEALREEVQRLKIATGQI 279 (345)
Q Consensus 209 LE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~---eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~gei 279 (345)
.|.....++.|...|.+. ++.+.+..+..++. .++.|...|+.+..=++.+-+.|.+++..||..+-.+
T Consensus 77 aE~~~~~ie~ElEeLTas--LFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m 148 (154)
T 2ocy_A 77 AEEEADKLNKEVEDLTAS--LFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSL 148 (154)
T ss_dssp HHTHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555543 23333333333322 2445555566555556677788889999999876554
No 111
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=69.14 E-value=28 Score=34.18 Aligned_cols=65 Identities=26% Similarity=0.430 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 019163 210 ERKVQTLQTEATTLSAQVTMLQR---DTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATGQIPA 281 (345)
Q Consensus 210 E~KVq~Lq~EN~~Ls~ql~~Lqr---~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~geip~ 281 (345)
..++..|+++.+.++.+|..+.. +...|..+-++|+.++..++.+ ...+.+++..+-..++-++.
T Consensus 43 ~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ipN~~~ 110 (425)
T 2dq3_A 43 IKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEE-------LRKVEEELKNTLLWIPNLPH 110 (425)
T ss_dssp HHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhCCCCCC
Confidence 33444444444444444443221 1234566677777777766642 23455666666555554443
No 112
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=68.74 E-value=43 Score=26.73 Aligned_cols=25 Identities=12% Similarity=0.263 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTML 230 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~L 230 (345)
|.+||..-..|..+...+..+...|
T Consensus 27 L~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 27 LEDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 113
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=68.62 E-value=27 Score=25.79 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=18.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019163 226 QVTMLQRDTTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 226 ql~~Lqr~~~~L~sEN~eLK~RLQaLEq 253 (345)
++..|+.+...|..+|.+|+.++..|+.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666777777777777766553
No 114
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=68.58 E-value=42 Score=33.37 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQRDTTG 236 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~ 236 (345)
.|.+|..+...|+.+...|.++...+.++...
T Consensus 32 ~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~ 63 (455)
T 2dq0_A 32 EILKLDTEWRTKLKEINRLRHERNKIAVEIGK 63 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555554444433
No 115
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=68.55 E-value=26 Score=25.60 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQR 232 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr 232 (345)
|++|..+|+.|..+...|+..+..|..
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555554444333
No 116
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=68.49 E-value=23 Score=25.78 Aligned_cols=18 Identities=22% Similarity=0.475 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019163 208 ELERKVQTLQTEATTLSA 225 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~ 225 (345)
+|..++..|...|..|..
T Consensus 13 ~l~~~l~~L~~rN~rL~~ 30 (51)
T 3m91_A 13 QLEARIDSLAARNSKLME 30 (51)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 117
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=68.15 E-value=20 Score=32.54 Aligned_cols=45 Identities=20% Similarity=0.246 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 019163 204 RYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQA 255 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~ 255 (345)
+.++.-+.-|+.|+.||..|..++..... |+..|+.+|++++.+.
T Consensus 13 ~ql~~ad~LV~~L~~En~~L~~ql~~k~~-------ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 13 QQIDSADLLVANLVNENFVLSEKLDTKAT-------EIKQLQKQIDSLNAQV 57 (190)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhh
Confidence 44455556678888888888888775444 4444444555554443
No 118
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=68.07 E-value=52 Score=27.48 Aligned_cols=69 Identities=20% Similarity=0.246 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 204 RYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIA 275 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a 275 (345)
..|+.|-.+|..|..+...|..+- ++....|....+.|...|..-..+.+-.-..|+.|+.|++.|+..
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~---q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~~ 83 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTES---QRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRRQ 83 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666664332 222333444444443333332222222223466677777666543
No 119
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=67.94 E-value=9.6 Score=27.73 Aligned_cols=19 Identities=26% Similarity=0.211 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 019163 234 TTGLTAENKELKLRLQAME 252 (345)
Q Consensus 234 ~~~L~sEN~eLK~RLQaLE 252 (345)
+..|..||.+||.++..|.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~ 39 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIV 39 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555554444
No 120
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=67.06 E-value=7.8 Score=26.39 Aligned_cols=28 Identities=4% Similarity=0.144 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQR 232 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr 232 (345)
.+..||.||..|-.++..|..++..|+.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3567888998888888888777765543
No 121
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=66.92 E-value=53 Score=27.15 Aligned_cols=50 Identities=16% Similarity=0.256 Sum_probs=31.7
Q ss_pred cChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019163 180 IDPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKEL 244 (345)
Q Consensus 180 ~DpKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eL 244 (345)
+.+|-+|=|++| ..|-.+-..|.-++..|...+..++..+..+..|+++.
T Consensus 7 vEEKyrKAMVsn---------------AQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK 56 (103)
T 4h22_A 7 VEEKYKKAMVSN---------------AQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEK 56 (103)
T ss_dssp -CCTHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---------------HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888 45555555666666666666666666655555555553
No 122
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=66.31 E-value=44 Score=27.68 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=6.6
Q ss_pred HHHHHhHHHHHHHHHH
Q 019163 229 MLQRDTTGLTAENKEL 244 (345)
Q Consensus 229 ~Lqr~~~~L~sEN~eL 244 (345)
.|+..+..++.||+.|
T Consensus 41 ~LE~~~s~le~e~~rl 56 (104)
T 3s9g_A 41 ELEKSLSRMEDENNRL 56 (104)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444444
No 123
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=65.83 E-value=7.2 Score=28.62 Aligned_cols=27 Identities=22% Similarity=0.348 Sum_probs=16.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 226 QVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 226 ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
.+..|+.....|..+|..|+.++..|+
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~ 49 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLR 49 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666667777777665554444
No 124
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=65.60 E-value=65 Score=27.62 Aligned_cols=64 Identities=13% Similarity=0.156 Sum_probs=35.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 183 KRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 183 KR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
.|.++.|-||.-+---| |+.||.+++........--.+...+.+....+..+......|+...+
T Consensus 37 eR~~k~lE~r~~~deEr------~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE 100 (147)
T 2b9c_A 37 ERGMKVIESRAQKDEEK------MEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 100 (147)
T ss_dssp THHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccHHH------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777888888766554 45555555555554444444444444444445555444444444444
No 125
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=65.38 E-value=5.6 Score=28.62 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 203 IRYTSELERKVQTLQTEATTLSAQV 227 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~Ls~ql 227 (345)
..|+++||.++..|+.....|...|
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999988888776654
No 126
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=65.23 E-value=3.4 Score=34.64 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVT 228 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~ 228 (345)
-+++|+.+++.|+.||..|+.+|.
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 378999999999999999999885
No 127
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=64.50 E-value=5.2 Score=31.62 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019163 241 NKELKLRLQAMEQQAHLRDALNEALREEVQRLKIAT 276 (345)
Q Consensus 241 N~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~ 276 (345)
-..||.+|..|+. .|..|+.|-.-||..+
T Consensus 17 VevLKe~I~EL~e-------~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 17 VEILKEQIRELVE-------KNSQLERENTLLKTLA 45 (78)
T ss_dssp CHHHHHHHHHHHH-------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHhC
Confidence 3456666655553 2344445555555553
No 128
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=64.35 E-value=9.8 Score=25.91 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=11.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019163 226 QVTMLQRDTTGLTAENKELKLRLQAM 251 (345)
Q Consensus 226 ql~~Lqr~~~~L~sEN~eLK~RLQaL 251 (345)
++...+.+...|..+|..|..++..|
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHhhHhhHHHHHHHHHHHHHHHHhc
Confidence 33334444444444455444444433
No 129
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=63.50 E-value=12 Score=25.42 Aligned_cols=16 Identities=44% Similarity=0.503 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHhc
Q 019163 262 NEALREEVQRLKIATG 277 (345)
Q Consensus 262 NE~L~eEV~rLk~a~g 277 (345)
|+.|+.||.|||..++
T Consensus 17 n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 17 NXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred hhhHHHHHHHHHHHHh
Confidence 5556677777776654
No 130
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=63.32 E-value=27 Score=26.98 Aligned_cols=12 Identities=42% Similarity=0.592 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 019163 237 LTAENKELKLRL 248 (345)
Q Consensus 237 L~sEN~eLK~RL 248 (345)
|..+|.+|+.+|
T Consensus 66 L~~e~~~L~~~L 77 (80)
T 1nlw_A 66 LQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444444
No 131
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=62.79 E-value=13 Score=29.47 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 019163 208 ELERKVQTLQTEATTLSAQVTMLQRDTTGLTAEN 241 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN 241 (345)
+|-.+|..|..|...|..++..++.....+...+
T Consensus 34 DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri 67 (77)
T 2w83_C 34 DLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKN 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555565555555555555444444443333
No 132
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=62.40 E-value=14 Score=31.84 Aligned_cols=17 Identities=12% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATT 222 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~ 222 (345)
+..++.++..++.|...
T Consensus 32 ~~~~e~~~~~~~~Elee 48 (130)
T 3cl3_D 32 ARAASEQARQLESEREA 48 (130)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHhHHHHHH
Confidence 33444444444444433
No 133
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=62.37 E-value=4.4 Score=37.33 Aligned_cols=38 Identities=29% Similarity=0.322 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019163 236 GLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATG 277 (345)
Q Consensus 236 ~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~g 277 (345)
.|..||.+||.++..|+.+. ...+.|++|.++|+..+.
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~~----~~~~~l~~En~rLr~lL~ 60 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQLE----SEVADLKKENKDLKESLD 60 (255)
T ss_dssp ---CTTTTHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhc
Confidence 34555666655555555432 223456677778877654
No 134
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=61.69 E-value=92 Score=28.08 Aligned_cols=51 Identities=4% Similarity=0.076 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019163 204 RYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQ 254 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq 254 (345)
..|.+|+.++..|......+..++..++.+...+..+-..++.++...+.+
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~ 82 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKK 82 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888888888888888888888777777666654
No 135
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=61.65 E-value=50 Score=26.20 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=8.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH
Q 019163 227 VTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 227 l~~Lqr~~~~L~sEN~eLK~RL 248 (345)
|..|++....+..+|..|...+
T Consensus 58 i~~Lr~~i~~~~~ek~~l~~e~ 79 (93)
T 3s4r_A 58 MRELRRQVDQLTNDKARVEVER 79 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444433333
No 136
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=61.63 E-value=32 Score=26.96 Aligned_cols=10 Identities=20% Similarity=0.567 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 019163 262 NEALREEVQR 271 (345)
Q Consensus 262 NE~L~eEV~r 271 (345)
|..|+.+++.
T Consensus 75 n~~L~~rl~~ 84 (88)
T 1nkp_A 75 REQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334444333
No 137
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=61.50 E-value=43 Score=33.86 Aligned_cols=20 Identities=10% Similarity=-0.124 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019163 211 RKVQTLQTEATTLSAQVTML 230 (345)
Q Consensus 211 ~KVq~Lq~EN~~Ls~ql~~L 230 (345)
.++..|+++.+.++.+|..+
T Consensus 51 ~~~~~l~~~rN~~sk~i~~~ 70 (484)
T 3lss_A 51 FLTEASKKLINICSKAVGAK 70 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555443
No 138
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=61.35 E-value=38 Score=34.33 Aligned_cols=36 Identities=6% Similarity=0.007 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 019163 203 IRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLT 238 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~ 238 (345)
...|.+|..+...|+.+...|.++...+.++...+.
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k 67 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRF 67 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566777777777777777777777666655544
No 139
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=61.10 E-value=55 Score=25.30 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTM 229 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~ 229 (345)
-++.|+.+|..|+.+...|..++..
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4788999999999998888888763
No 140
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=60.93 E-value=12 Score=25.30 Aligned_cols=17 Identities=47% Similarity=0.480 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHhc
Q 019163 261 LNEALREEVQRLKIATG 277 (345)
Q Consensus 261 lNE~L~eEV~rLk~a~g 277 (345)
.|..|+.||.||+..++
T Consensus 15 ~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 15 KNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HhHHHHHHHHHHHHHhh
Confidence 35556778888887654
No 141
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=60.86 E-value=14 Score=27.59 Aligned_cols=17 Identities=41% Similarity=0.393 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q 019163 260 ALNEALREEVQRLKIAT 276 (345)
Q Consensus 260 alNE~L~eEV~rLk~a~ 276 (345)
..|+.|..||..|+..+
T Consensus 44 ~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 44 SKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555555443
No 142
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=60.74 E-value=8.6 Score=28.06 Aligned_cols=27 Identities=19% Similarity=0.373 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQ 231 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lq 231 (345)
+++++...+..|..||..|..++..|+
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555554433
No 143
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=60.31 E-value=55 Score=31.34 Aligned_cols=23 Identities=22% Similarity=0.211 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019163 204 RYTSELERKVQTLQTEATTLSAQ 226 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~q 226 (345)
.+...|++++.+++.--..++.|
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~ 419 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQ 419 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHH
Confidence 34444555554444444444443
No 144
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=60.08 E-value=25 Score=28.18 Aligned_cols=28 Identities=25% Similarity=0.372 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019163 218 TEATTLSAQVTMLQRDTTGLTAENKELK 245 (345)
Q Consensus 218 ~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK 245 (345)
.||..|...|..++.+...|..||.+|+
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788899999988888888999998874
No 145
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=59.54 E-value=33 Score=33.54 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 208 ELERKVQTLQTEATTLSAQVTMLQR 232 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~ql~~Lqr 232 (345)
+|+.++..|+.++..+..++..+.+
T Consensus 14 ~l~~~~~~l~~~~~~~~~~~~~~~~ 38 (403)
T 4etp_A 14 ALKEKIAALKEKIKDTELGMKELNE 38 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 146
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=59.01 E-value=21 Score=28.52 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019163 218 TEATTLSAQVTMLQRDTTGLTAENKELK 245 (345)
Q Consensus 218 ~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK 245 (345)
.||..|..+|..++.+...|..+|.+|+
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888888888887777777777764
No 147
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=58.96 E-value=1e+02 Score=27.79 Aligned_cols=28 Identities=7% Similarity=0.135 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRD 233 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~ 233 (345)
+..|..++..|+.+.+.|..++..+-..
T Consensus 141 ~~~L~~e~~~l~~~~~~l~~qlE~~v~~ 168 (213)
T 1ik9_A 141 NEHLQKENERLLRDWNDVQGRFEKAVSA 168 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 148
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=58.57 E-value=27 Score=32.76 Aligned_cols=48 Identities=19% Similarity=0.307 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
-|.|+..|++.|..--..+..+|+.|+++=..|+.+...++.|+..++
T Consensus 178 EI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~q 225 (242)
T 3uux_B 178 EIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLE 225 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666666665666666655555555544
No 149
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=58.39 E-value=64 Score=25.18 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
..+||.+...|..+.+.|..+++.++..+..|.....+|...|..|+
T Consensus 37 rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 37 KKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777777888888888777777777777777766666655554443
No 150
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=57.99 E-value=42 Score=26.12 Aligned_cols=27 Identities=15% Similarity=0.163 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 202 KIRYTSELERKVQTLQTEATTLSAQVT 228 (345)
Q Consensus 202 KkqyIeELE~KVq~Lq~EN~~Ls~ql~ 228 (345)
|...|.+||.++.....++..|..+|.
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666665555555555544
No 151
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=57.97 E-value=43 Score=24.30 Aligned_cols=9 Identities=89% Similarity=1.158 Sum_probs=4.7
Q ss_pred HHHHHHHHH
Q 019163 264 ALREEVQRL 272 (345)
Q Consensus 264 ~L~eEV~rL 272 (345)
.|++||++|
T Consensus 41 ~Lkeele~L 49 (51)
T 3m91_A 41 ALREEVDRL 49 (51)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 345555554
No 152
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=57.73 E-value=63 Score=26.60 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTML 230 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~L 230 (345)
...|.+|..|+.++.+|..++...
T Consensus 14 ~~~e~e~~~l~~~~~el~~~l~~~ 37 (125)
T 1joc_A 14 LKGEGEIEKLQTKVLELQRKLDNT 37 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555443
No 153
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=57.57 E-value=17 Score=24.71 Aligned_cols=16 Identities=13% Similarity=-0.009 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhc
Q 019163 262 NEALREEVQRLKIATG 277 (345)
Q Consensus 262 NE~L~eEV~rLk~a~g 277 (345)
|..|..||.|||..++
T Consensus 17 ~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 17 LYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHh
Confidence 4456677888877655
No 154
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=57.44 E-value=1.8e+02 Score=29.97 Aligned_cols=72 Identities=22% Similarity=0.379 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 019163 200 ERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTG-LTAENKELKLRLQAMEQQAHLRD---ALNEALREEVQRLKIA 275 (345)
Q Consensus 200 eRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~-L~sEN~eLK~RLQaLEqq~~Lrd---alNE~L~eEV~rLk~a 275 (345)
++.++.-.-+|.+-+.++.....|.+++. ++... +...++.|..+++. +...|++ ...+.|.+||+.|+..
T Consensus 508 ~~~~~~~~~~~~~~~~~~e~~~ql~~kme---~~~~~~~~e~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 508 EMQRKNEQMMEQKERSYQEHLKQLTEKME---NDRVQLLKEQERTLALKLQE--QEQLLKEGFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--HHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333444444555555555555433 22222 33333444333322 2222322 3455688999999887
Q ss_pred h
Q 019163 276 T 276 (345)
Q Consensus 276 ~ 276 (345)
.
T Consensus 583 ~ 583 (592)
T 1f5n_A 583 M 583 (592)
T ss_dssp C
T ss_pred h
Confidence 3
No 155
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=57.34 E-value=1.1e+02 Score=30.30 Aligned_cols=6 Identities=33% Similarity=0.423 Sum_probs=3.2
Q ss_pred Cccccc
Q 019163 337 NFMDFN 342 (345)
Q Consensus 337 ~~~~~~ 342 (345)
...||+
T Consensus 200 Gsv~F~ 205 (409)
T 1m1j_C 200 GSEDFR 205 (409)
T ss_dssp SCSCCC
T ss_pred CCCccc
Confidence 345665
No 156
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=57.08 E-value=55 Score=23.99 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=19.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019163 226 QVTMLQRDTTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 226 ql~~Lqr~~~~L~sEN~eLK~RLQaLEq 253 (345)
.+..|+.+...|..+|..|+..|..|..
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~ 51 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777788888888777655543
No 157
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=57.07 E-value=85 Score=26.22 Aligned_cols=46 Identities=17% Similarity=0.197 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHH
Q 019163 191 NRQSAARSKERKIRYTSELERKVQTLQT---EATTLSAQVTMLQRDTTG 236 (345)
Q Consensus 191 NRESArRSReRKkqyIeELE~KVq~Lq~---EN~~Ls~ql~~Lqr~~~~ 236 (345)
|=.+|-..=..|+.-|++|..++..+.. .+.-|..|+.....++..
T Consensus 32 ~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~a 80 (110)
T 2v4h_A 32 QLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQA 80 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3355666666688888888888887777 555677777776666554
No 158
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=56.91 E-value=71 Score=25.27 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKEL 244 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eL 244 (345)
.+++.+...++.+...|..++..++.++..+...-..+
T Consensus 33 k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a 70 (101)
T 3u59_A 33 KQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEA 70 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444433333333
No 159
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=56.23 E-value=51 Score=23.37 Aligned_cols=26 Identities=15% Similarity=0.106 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 203 IRYTSELERKVQTLQTEATTLSAQVT 228 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~Ls~ql~ 228 (345)
..++.+++.++..+..+...+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~k~~~~ 36 (60)
T 3htk_A 11 ENQVEELTEKCSLKTDEFLKAKEKIN 36 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443333333333
No 160
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=56.03 E-value=37 Score=26.46 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 247 RLQAMEQQAHLRDALNEALREEVQRLKI 274 (345)
Q Consensus 247 RLQaLEqq~~LrdalNE~L~eEV~rLk~ 274 (345)
+|..+|.+..-+|++...|+.|+..++.
T Consensus 41 ~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444444444444555555555555543
No 161
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=55.61 E-value=51 Score=25.27 Aligned_cols=22 Identities=18% Similarity=0.028 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019163 193 QSAARSKERKIRYTSELERKVQ 214 (345)
Q Consensus 193 ESArRSReRKkqyIeELE~KVq 214 (345)
.+-++-|.+=..++.+|..-|-
T Consensus 12 ~~ErrRR~~in~~f~~L~~lvP 33 (82)
T 1am9_A 12 AIEKRYRSSINDKIIELKDLVV 33 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHhcc
Confidence 4444444444556666665543
No 162
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=55.08 E-value=75 Score=24.95 Aligned_cols=38 Identities=16% Similarity=0.266 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKE 243 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~e 243 (345)
+-+|-.++..|+.|+..|+-+++.+..+...|....++
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd 59 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQ 59 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777776666655555444444
No 163
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=54.57 E-value=56 Score=32.04 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=28.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 019163 190 ANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAE 240 (345)
Q Consensus 190 sNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sE 240 (345)
.|-+..+.+-.+|..-+ + -.++..|..+...+..++..|+.+...+..+
T Consensus 9 ~~~~~~~~~~~~r~~~~-~-~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~ 57 (421)
T 1ses_A 9 QEPEVFHRAIREKGVAL-D-LEALLALDREVQELKKRLQEVQTERNQVAKR 57 (421)
T ss_dssp HCHHHHHHHHHHHTCCC-C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHhCCCc-C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555444443222 2 3556667777777777777777666666544
No 164
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=54.18 E-value=52 Score=25.72 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRD 233 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~ 233 (345)
|.+|-.++..+..++..|..++..++..
T Consensus 2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~ 29 (86)
T 3swk_A 2 MRELRRQVDQLTNDKARVEVERDNLAED 29 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4567777777777777776666654443
No 165
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=53.87 E-value=2.7e+02 Score=34.63 Aligned_cols=15 Identities=20% Similarity=0.240 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 019163 201 RKIRYTSELERKVQT 215 (345)
Q Consensus 201 RKkqyIeELE~KVq~ 215 (345)
+|++-+++.|.+++.
T Consensus 1973 ~~k~~v~~~~~~~~~ 1987 (3245)
T 3vkg_A 1973 IKQKDARELQVQLDV 1987 (3245)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 166
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=53.66 E-value=1.1e+02 Score=27.70 Aligned_cols=44 Identities=25% Similarity=0.307 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 248 (345)
.|..|..++..|..++.....++..|+++...+...-..++.++
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~ 64 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQT 64 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 45566666666666666666666666666555555554444444
No 167
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=53.38 E-value=22 Score=24.02 Aligned_cols=16 Identities=13% Similarity=0.115 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHhc
Q 019163 262 NEALREEVQRLKIATG 277 (345)
Q Consensus 262 NE~L~eEV~rLk~a~g 277 (345)
|..|..||.|||..++
T Consensus 16 ~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 16 XYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHc
Confidence 4556677777776654
No 168
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=53.29 E-value=73 Score=24.28 Aligned_cols=43 Identities=16% Similarity=0.175 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019163 212 KVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQ 254 (345)
Q Consensus 212 KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq 254 (345)
...........+..++.........+..+...|+.+++.+|.+
T Consensus 14 e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~e 56 (81)
T 1ic2_A 14 DKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDE 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444445555555555555555555544
No 169
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=52.77 E-value=7.4 Score=28.24 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019163 203 IRYTSELERKVQTLQTEATTL 223 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~L 223 (345)
..||++||.+|..|+.....|
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 378899999998888766554
No 170
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=52.25 E-value=69 Score=29.29 Aligned_cols=48 Identities=19% Similarity=0.222 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAH 256 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~ 256 (345)
=|+=.|.++..|+.+|..|..+++.|.. ...+|..+-.++..++....
T Consensus 66 aVSL~erQ~~~LR~r~~~Le~~L~~Li~----~A~~Ne~l~~~~~~l~l~LL 113 (252)
T 3e98_A 66 AVSLVERQVRLLRERNIEMRHRLSQLMD----VARENDRLFDKTRRLVLDLL 113 (252)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Confidence 3456677777888888888888776544 56778777777777776543
No 171
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=52.17 E-value=14 Score=24.21 Aligned_cols=14 Identities=50% Similarity=0.743 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 019163 236 GLTAENKELKLRLQ 249 (345)
Q Consensus 236 ~L~sEN~eLK~RLQ 249 (345)
.|++||+.||.+++
T Consensus 10 sleaenkqlkakve 23 (31)
T 1p9i_A 10 SLEAENKQLKAKVE 23 (31)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555554443
No 172
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=51.76 E-value=1.2e+02 Score=26.38 Aligned_cols=36 Identities=14% Similarity=0.251 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENK 242 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~ 242 (345)
+.+|.+|..|+........+.....+....|..+..
T Consensus 73 d~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id 108 (155)
T 2efr_A 73 DKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSID 108 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 173
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=51.71 E-value=87 Score=25.94 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 019163 234 TTGLTAENKELKLRLQAMEQQ 254 (345)
Q Consensus 234 ~~~L~sEN~eLK~RLQaLEqq 254 (345)
...|..+..+||..++.||.+
T Consensus 20 i~~L~~ei~eLk~~ve~lEkE 40 (106)
T 4e61_A 20 IGSLNEEIEQYKGTVSTLEIE 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555543
No 174
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.47 E-value=22 Score=35.08 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 215 TLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKI 274 (345)
Q Consensus 215 ~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~ 274 (345)
.|...+..|..++..|++++.-|..|+..|+.++..+.. ....+++|+.+|+.
T Consensus 39 ~l~~~~~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~-------e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 39 ALSNVNSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKR-------ELKRAQEEVKRIQS 91 (428)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTC
T ss_pred hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHcC
Confidence 444445555566666666666666666666555444432 12345667777653
No 175
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=51.34 E-value=65 Score=24.92 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 208 ELERKVQTLQTEATTLSAQVTMLQR 232 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~ql~~Lqr 232 (345)
+||.++..|+...+-+..-|..|..
T Consensus 11 ~le~Ri~~LE~klAfqE~tIeeLn~ 35 (78)
T 3efg_A 11 ELEARLVELETRLSFQEQALTELSE 35 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666665555554444444433
No 176
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=51.00 E-value=73 Score=23.60 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 202 KIRYTSELERKVQTLQTEATTLSAQVTMLQRD 233 (345)
Q Consensus 202 KkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~ 233 (345)
|...|.+||.++..++.-...+...+..+...
T Consensus 4 ~~~~~~~le~kl~~lEnIv~~l~~eve~~~~~ 35 (65)
T 3m0d_C 4 KEKLLAELEGKLRVFENIVAVLNKEVEASHLA 35 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44567888888888777666555555443333
No 177
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=50.87 E-value=23 Score=25.68 Aligned_cols=25 Identities=32% Similarity=0.368 Sum_probs=11.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Q 019163 227 VTMLQRDTTGLTAENKELKLRLQAM 251 (345)
Q Consensus 227 l~~Lqr~~~~L~sEN~eLK~RLQaL 251 (345)
+..|+.....|..||..|+.++..|
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L 48 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKAL 48 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555554444443
No 178
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=50.12 E-value=22 Score=24.23 Aligned_cols=17 Identities=41% Similarity=0.485 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhcC
Q 019163 262 NEALREEVQRLKIATGQ 278 (345)
Q Consensus 262 NE~L~eEV~rLk~a~ge 278 (345)
|..|..||.||+..+|+
T Consensus 17 ~~~Le~eV~RL~~ll~~ 33 (34)
T 2hy6_A 17 NYHLANAVARLAKAVGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 44556677777776653
No 179
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=50.02 E-value=8 Score=35.56 Aligned_cols=6 Identities=0% Similarity=0.097 Sum_probs=2.8
Q ss_pred CCCCCC
Q 019163 284 GNPFGR 289 (345)
Q Consensus 284 ~~P~~~ 289 (345)
..||+.
T Consensus 80 ~~~~~~ 85 (255)
T 2j5u_A 80 PTNWND 85 (255)
T ss_dssp GGGTTT
T ss_pred CCCcce
Confidence 445543
No 180
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=49.65 E-value=22 Score=24.18 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHhc
Q 019163 262 NEALREEVQRLKIATG 277 (345)
Q Consensus 262 NE~L~eEV~rLk~a~g 277 (345)
+..|..||.|||..++
T Consensus 17 ~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 17 GHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHHhc
Confidence 4556677888877654
No 181
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=49.45 E-value=1.2e+02 Score=25.70 Aligned_cols=10 Identities=40% Similarity=0.607 Sum_probs=5.4
Q ss_pred HHHHHHHHHh
Q 019163 267 EEVQRLKIAT 276 (345)
Q Consensus 267 eEV~rLk~a~ 276 (345)
+||++||...
T Consensus 92 ae~erlr~~~ 101 (121)
T 3mq7_A 92 AEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 4555555544
No 182
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=49.26 E-value=15 Score=28.68 Aligned_cols=12 Identities=33% Similarity=0.617 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q 019163 262 NEALREEVQRLK 273 (345)
Q Consensus 262 NE~L~eEV~rLk 273 (345)
++.|++||.||.
T Consensus 52 ~~lLK~EIRRlE 63 (71)
T 3bbp_D 52 IKLLKSEIRRLE 63 (71)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444555555553
No 183
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=49.03 E-value=15 Score=28.05 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019163 204 RYTSELERKVQTLQTEATTL 223 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~L 223 (345)
.||..|+.+++.|+.++..|
T Consensus 57 ~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 57 EYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 184
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=48.57 E-value=1.1e+02 Score=25.03 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGL 237 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L 237 (345)
|.+|-+.|+.|+.|...|..+...|+.....+
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~LE~~l~e~ 69 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANLQNAIADA 69 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 55555566666666555555555555554443
No 185
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=48.45 E-value=59 Score=29.80 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019163 213 VQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQ 254 (345)
Q Consensus 213 Vq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq 254 (345)
+++|+++.-+...+...|+.....+.+||..|+.++..|+.-
T Consensus 32 ~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn 73 (206)
T 3oa7_A 32 LQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGN 73 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCC
Confidence 345555555555566666677777888888888888888763
No 186
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=47.90 E-value=29 Score=23.63 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHhc
Q 019163 262 NEALREEVQRLKIATG 277 (345)
Q Consensus 262 NE~L~eEV~rLk~a~g 277 (345)
|..|..||.|||..++
T Consensus 17 n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 17 LYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHc
Confidence 4556677888877654
No 187
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=47.65 E-value=68 Score=25.05 Aligned_cols=20 Identities=10% Similarity=0.210 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019163 198 SKERKIRYTSELERKVQTLQ 217 (345)
Q Consensus 198 SReRKkqyIeELE~KVq~Lq 217 (345)
.+..+..-+.+++.-...|.
T Consensus 28 q~~~l~~~~~e~~~~~~eL~ 47 (117)
T 2zqm_A 28 QKQKVQLELTEAKKALDEIE 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444443
No 188
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=47.61 E-value=15 Score=23.64 Aligned_cols=17 Identities=18% Similarity=0.380 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019163 216 LQTEATTLSAQVTMLQR 232 (345)
Q Consensus 216 Lq~EN~~Ls~ql~~Lqr 232 (345)
|...|..|..++..|+-
T Consensus 5 lkqknarlkqeiaaley 21 (28)
T 3ra3_B 5 LKQKNARLKQEIAALEY 21 (28)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHH
Confidence 33444444444444333
No 189
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=46.92 E-value=1.2e+02 Score=27.82 Aligned_cols=31 Identities=26% Similarity=0.290 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019163 218 TEATTLSAQVTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 218 ~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 248 (345)
.||..|..+|..++.+...|..||.+|+.-+
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLa 145 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAEVA 145 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888888888888875443
No 190
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=46.83 E-value=45 Score=33.22 Aligned_cols=47 Identities=13% Similarity=0.308 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019163 202 KIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 202 KkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 248 (345)
=-+|.++||.++..|+.....-...|..|+.....+..+-+.|...|
T Consensus 111 ~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 111 FKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788899999998888777666688888877777777766665555
No 191
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=46.21 E-value=53 Score=23.96 Aligned_cols=32 Identities=25% Similarity=0.464 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGLT 238 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~ 238 (345)
..||.-|..|+..|..|...+..|+++...|+
T Consensus 20 aklenivarlendnanlekdianlekdianle 51 (56)
T 3he4_A 20 AKLENIVARLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777666655444
No 192
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=45.83 E-value=55 Score=32.17 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 019163 221 TTLSAQVTMLQRDTTGLTAENKEL 244 (345)
Q Consensus 221 ~~Ls~ql~~Lqr~~~~L~sEN~eL 244 (345)
.+|..++..++++...|..+++.+
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~ 29 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQ 29 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 193
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=45.76 E-value=1.2e+02 Score=24.69 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019163 208 ELERKVQTLQTEATTLSAQ 226 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~q 226 (345)
+.|.....++.|...|...
T Consensus 44 ~aE~~~~~ie~ElEeLTas 62 (97)
T 2eqb_B 44 KAEEEADKLNKEVEDLTAS 62 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666554
No 194
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=45.42 E-value=1.1e+02 Score=23.90 Aligned_cols=45 Identities=9% Similarity=0.124 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019163 204 RYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 248 (345)
..+..++.++..|.............|+..+..|..|.+.|..++
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql 58 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSM 58 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555566666666654443
No 195
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=45.19 E-value=1.4e+02 Score=25.12 Aligned_cols=6 Identities=33% Similarity=0.584 Sum_probs=2.3
Q ss_pred HHHHHH
Q 019163 261 LNEALR 266 (345)
Q Consensus 261 lNE~L~ 266 (345)
++..|.
T Consensus 94 le~~L~ 99 (155)
T 2oto_A 94 LEKELE 99 (155)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 196
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=45.07 E-value=38 Score=22.90 Aligned_cols=17 Identities=18% Similarity=0.094 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHhcC
Q 019163 262 NEALREEVQRLKIATGQ 278 (345)
Q Consensus 262 NE~L~eEV~rLk~a~ge 278 (345)
+..|..||.||+..+|+
T Consensus 16 ~~~le~EV~Rl~~ll~~ 32 (33)
T 2wq1_A 16 IYHNTNEIARNTKLVGE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHhcC
Confidence 44566778888776653
No 197
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=45.01 E-value=30 Score=32.79 Aligned_cols=42 Identities=19% Similarity=0.379 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019163 210 ERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQ 254 (345)
Q Consensus 210 E~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq 254 (345)
+.+++.|+.++..|.++++.|++....+...| +.++..|+..
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n---~~rl~~Lqk~ 225 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANKAN---AERLKRLQKS 225 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh---HHHHHHHHHH
Confidence 44555566666666666666655544444433 3344444443
No 198
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=44.61 E-value=48 Score=25.88 Aligned_cols=38 Identities=16% Similarity=0.335 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKEL 244 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eL 244 (345)
.|+..|++.|..--..+..+++.++++-..|+.+-..+
T Consensus 24 ~EID~Ki~nL~~mR~ivldRlA~lEqdE~~LE~~l~~i 61 (72)
T 2xu6_A 24 RDIEVEVENLRQKKEKLLGKIANIEQNQLMLEDNLKQI 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34444444444444444444444444433333333333
No 199
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=43.58 E-value=56 Score=24.76 Aligned_cols=6 Identities=33% Similarity=0.418 Sum_probs=2.2
Q ss_pred HHHHHH
Q 019163 240 ENKELK 245 (345)
Q Consensus 240 EN~eLK 245 (345)
+|..|+
T Consensus 69 ~~~~L~ 74 (83)
T 1nkp_B 69 QNALLE 74 (83)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 200
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=43.54 E-value=20 Score=26.09 Aligned_cols=25 Identities=12% Similarity=0.337 Sum_probs=15.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Q 019163 229 MLQRDTTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 229 ~Lqr~~~~L~sEN~eLK~RLQaLEq 253 (345)
.+...+..|..||.+|+.++..++.
T Consensus 31 ~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 31 QVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667778888888777776664
No 201
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=43.31 E-value=1.4e+02 Score=24.58 Aligned_cols=31 Identities=26% Similarity=0.286 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTG 236 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~ 236 (345)
|.+|-+.|+.|+.|...|..+...|+.....
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~sLE~~l~e 70 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKASLENSLEE 70 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4444445555555554444444444444333
No 202
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=43.17 E-value=99 Score=22.91 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 019163 237 LTAENKELKLRLQAME 252 (345)
Q Consensus 237 L~sEN~eLK~RLQaLE 252 (345)
...|..+|+..+|.|+
T Consensus 54 ~k~Ei~elrr~iq~L~ 69 (77)
T 3trt_A 54 AKQESTEYRRQVQSLT 69 (77)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444445544444444
No 203
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=41.77 E-value=78 Score=30.47 Aligned_cols=6 Identities=17% Similarity=0.495 Sum_probs=2.9
Q ss_pred Cccccc
Q 019163 337 NFMDFN 342 (345)
Q Consensus 337 ~~~~~~ 342 (345)
...||+
T Consensus 122 Gsv~F~ 127 (323)
T 1lwu_C 122 GSVNFT 127 (323)
T ss_dssp SCSCCC
T ss_pred CCCccc
Confidence 345554
No 204
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=41.61 E-value=74 Score=23.17 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 019163 208 ELERKVQTLQTEATTLSAQVTMLQRDTTGLTAEN 241 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN 241 (345)
++..++..|+.+...++..++...++|..|.+-.
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK 37 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARLKKLVGDLLNVK 37 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666555555555555433
No 205
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=41.59 E-value=1.5e+02 Score=24.67 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 019163 212 KVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRL 248 (345)
Q Consensus 212 KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RL 248 (345)
.|..|+..+.-+..-...=...-..+..|..+|+.++
T Consensus 63 ~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql 99 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQL 99 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHH
Confidence 3444444444444444433333334444444444333
No 206
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=41.49 E-value=35 Score=22.66 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=14.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019163 228 TMLQRDTTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 228 ~~Lqr~~~~L~sEN~eLK~RLQaLEq 253 (345)
..|+++....++||..|.+.+..||.
T Consensus 4 aqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34444555566666666555555543
No 207
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=41.17 E-value=88 Score=22.49 Aligned_cols=10 Identities=50% Similarity=0.833 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 019163 265 LREEVQRLKI 274 (345)
Q Consensus 265 L~eEV~rLk~ 274 (345)
|+.||.||..
T Consensus 36 lrdeiarlen 45 (52)
T 3he5_B 36 LRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4445555543
No 208
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=41.08 E-value=73 Score=28.80 Aligned_cols=40 Identities=20% Similarity=0.155 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELK 245 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK 245 (345)
+.+|+.++..|+.+|..|...+..|..++..+..+..++.
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E 173 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALE 173 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777788888887777777777777777766665553
No 209
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=40.69 E-value=17 Score=33.50 Aligned_cols=35 Identities=11% Similarity=0.088 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 199 KERKIRYTSELERKVQTLQTEATTLSAQVTMLQRD 233 (345)
Q Consensus 199 ReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~ 233 (345)
=.......+++..+++.|+.||..+..+|..|+++
T Consensus 143 ~~e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e 177 (250)
T 2ve7_C 143 YMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKE 177 (250)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHSCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566666666666666666655555444
No 210
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=40.07 E-value=31 Score=29.72 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAM 251 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaL 251 (345)
+..|...+.....+...|..++..-.......+.++..+...|..|
T Consensus 34 l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~L 79 (135)
T 2e7s_A 34 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDL 79 (135)
T ss_dssp HHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444556666666655544444444444555544444433
No 211
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=39.79 E-value=1.3e+02 Score=23.15 Aligned_cols=14 Identities=29% Similarity=0.411 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 019163 203 IRYTSELERKVQTL 216 (345)
Q Consensus 203 kqyIeELE~KVq~L 216 (345)
+.-|..||..+..+
T Consensus 11 ~~~i~~lE~eL~~~ 24 (74)
T 2xv5_A 11 RRLLAEKEREMAEM 24 (74)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444443333
No 212
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=38.72 E-value=1.9e+02 Score=24.86 Aligned_cols=84 Identities=17% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 189 LANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREE 268 (345)
Q Consensus 189 LsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eE 268 (345)
++.|+++.+--..=.+.+.-|+..+..|+.|...-..=+..|............+.+.++..-.....--..+...|++-
T Consensus 64 lkDk~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~h 143 (152)
T 4fla_A 64 ITDKEAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSH 143 (152)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 019163 269 VQRL 272 (345)
Q Consensus 269 V~rL 272 (345)
|+-|
T Consensus 144 i~sL 147 (152)
T 4fla_A 144 IQSL 147 (152)
T ss_dssp HHTC
T ss_pred hhcC
No 213
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=37.29 E-value=50 Score=25.30 Aligned_cols=32 Identities=22% Similarity=0.225 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 200 ERKIRYTSELERKVQTLQTEATTLSAQVTMLQ 231 (345)
Q Consensus 200 eRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lq 231 (345)
..|...|.+||..+..-..|+..|+.++..++
T Consensus 21 ~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 21 MLKEERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888888888887777765543
No 214
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.18 E-value=1.1e+02 Score=25.09 Aligned_cols=31 Identities=26% Similarity=0.401 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGL 237 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L 237 (345)
.+|..++..++.+...|...+...-++...+
T Consensus 47 ~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~ 77 (130)
T 2dnx_A 47 SKLQENLQQLQHSTNQLAKETNELLKELGSL 77 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555555555555555554444444443
No 215
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=37.01 E-value=1.3e+02 Score=29.33 Aligned_cols=105 Identities=18% Similarity=0.235 Sum_probs=0.0
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHH
Q 019163 182 PKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKL----RLQAMEQQAHL 257 (345)
Q Consensus 182 pKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~----RLQaLEqq~~L 257 (345)
|+-+.|++.| .++=+..|.+|....+.|+.+...-.+..-.++++...|.-+--.|+. .+.-|.....-
T Consensus 197 ~~e~~~~~~n-------~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd~~~~~L~~~g~~ 269 (373)
T 3hhm_B 197 EKEIQRIMHN-------YDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRDQYLMWLTQKGVR 269 (373)
T ss_dssp CSHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----------
T ss_pred hHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHcCCC
Q ss_pred HHHHHHHHH----HHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 019163 258 RDALNEALR----EEVQRLKIATGQIPAANGNPFGRGLPP 293 (345)
Q Consensus 258 rdalNE~L~----eEV~rLk~a~geip~~~~~P~~~~~q~ 293 (345)
.+.+|+.|. ++--.+......++.....||+-|...
T Consensus 270 ~~~i~~~L~~~~~~~~~~~~e~~~~~~~~~~~~WyhG~is 309 (373)
T 3hhm_B 270 QKKLNEWLGNENTEDQYSLVEDDEDLPHHDEKTWNVGSSN 309 (373)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHhccCCCCCcccccccccccccccCCCCcCCCCC
No 216
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=36.96 E-value=1.2e+02 Score=24.54 Aligned_cols=22 Identities=18% Similarity=0.292 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019163 208 ELERKVQTLQTEATTLSAQVTM 229 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~ql~~ 229 (345)
.|+..+..|+.....+..+++.
T Consensus 99 ~l~~~~~~l~~~l~~l~~~i~~ 120 (133)
T 1fxk_C 99 ELESTLQKMGENLRAITDIMMK 120 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 217
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=36.96 E-value=1.1e+02 Score=21.59 Aligned_cols=34 Identities=12% Similarity=0.203 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGLTAE 240 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sE 240 (345)
..|+..+..+..+...+...+..+...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 41 (60)
T 3htk_A 8 KTLENQVEELTEKCSLKTDEFLKAKEKINEIFEK 41 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443333333
No 218
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=36.80 E-value=1.5e+02 Score=23.18 Aligned_cols=31 Identities=26% Similarity=0.302 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019163 221 TTLSAQVTMLQRDTTGLTAENKELKLRLQAM 251 (345)
Q Consensus 221 ~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaL 251 (345)
..|..+|..|+.+...|...+.++.-.|..|
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql 53 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQV 53 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3444455555555544544444444444333
No 219
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=36.79 E-value=1.6e+02 Score=23.39 Aligned_cols=45 Identities=11% Similarity=0.282 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAM 251 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaL 251 (345)
+.|+.++..|..+-..|..+|..|+++...|..+...++..+..+
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L 51 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERL 51 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444333
No 220
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=36.26 E-value=2.2e+02 Score=26.39 Aligned_cols=58 Identities=21% Similarity=0.312 Sum_probs=28.4
Q ss_pred HHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019163 188 ILANRQSA-ARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQA 250 (345)
Q Consensus 188 iLsNRESA-rRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQa 250 (345)
-|+|||.. +.+|.||..-..++. .|.... --+.+|..|+++....+++|-....+|..
T Consensus 98 ~IR~~E~svqp~R~~R~~l~~~I~----kLk~k~-P~s~kl~~LeqELvraEae~lvaEAqL~n 156 (234)
T 3plt_A 98 SIRNIEASVQPSRDRKEKITDEIA----HLKYKD-PQSTKIPVLEQELVRAEAESLVAEAQLSN 156 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHC-TTCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH----HHhccC-CCCchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45677765 556666655544443 222111 11234555555555555555544444433
No 221
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=36.23 E-value=55 Score=29.39 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 204 RYTSELERKVQTLQTEATTLSAQVT 228 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql~ 228 (345)
..+.+|..++..|+.+|..|..+.+
T Consensus 152 d~~~~L~~~n~~LqkeNeRL~~E~n 176 (184)
T 3w03_C 152 DTIAENQAKNEHLQKENERLLRDWN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555554444433
No 222
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=35.90 E-value=1.2e+02 Score=21.96 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 019163 211 RKVQTLQTEATTLSAQVTMLQRDTTGLTA 239 (345)
Q Consensus 211 ~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~s 239 (345)
.++..|..+..+|..++..|..+...|..
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777777777776665555444443
No 223
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=35.84 E-value=2.4e+02 Score=25.16 Aligned_cols=45 Identities=20% Similarity=0.226 Sum_probs=27.9
Q ss_pred chhhccCChhHHHHhhccChHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 163 DGVKKAVDRDRLAELALIDPKRAKRILANRQSAARSKERKIRYTSEL 209 (345)
Q Consensus 163 ~e~kkim~~e~laEla~~DpKR~KRiLsNRESArRSReRKkqyIeEL 209 (345)
+++.|+++..+.+= -..-.+++++..-|.-..+-++-|..|+.++
T Consensus 19 e~aek~~~~k~~~l--e~ek~~l~~~e~~r~k~~~h~~~k~~qlre~ 63 (169)
T 3k29_A 19 DRAEKVVKEKRRLL--ELEQEKLRERESERDKVKNHYMQKIRQLREQ 63 (169)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666553321 0133667777888888888888787666553
No 224
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=35.67 E-value=1.4e+02 Score=22.59 Aligned_cols=51 Identities=18% Similarity=0.262 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 019163 199 KERKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQ 249 (345)
Q Consensus 199 ReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQ 249 (345)
...-...++.++.++...+..+..+...|..|++.+..|+.+-..+..+|.
T Consensus 15 ~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~ 65 (81)
T 1ic2_A 15 KENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLK 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666666666666666666666666666666555544443
No 225
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=35.21 E-value=20 Score=30.01 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=16.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHH
Q 019163 228 TMLQRDTTGLTAENKELKLRLQA 250 (345)
Q Consensus 228 ~~Lqr~~~~L~sEN~eLK~RLQa 250 (345)
+.|..+...|..||+.||.+|..
T Consensus 11 EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 11 EEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555666788999999998873
No 226
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=35.18 E-value=65 Score=32.87 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELK 245 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK 245 (345)
..+|+.++..++.+.......+...++....|..+.+...
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~ 376 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQ 376 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4678888888887777766666655555444444444433
No 227
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=34.98 E-value=1.4e+02 Score=23.78 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019163 237 LTAENKELKLRLQAMEQ 253 (345)
Q Consensus 237 L~sEN~eLK~RLQaLEq 253 (345)
...||..|..+|..++.
T Consensus 44 aL~EN~~Lh~~ie~l~e 60 (83)
T 1uii_A 44 ALKENEKLHKEIEQKDN 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45577777777666654
No 228
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=34.36 E-value=1.3e+02 Score=21.64 Aligned_cols=14 Identities=21% Similarity=0.387 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 019163 212 KVQTLQTEATTLSA 225 (345)
Q Consensus 212 KVq~Lq~EN~~Ls~ 225 (345)
++..|...|-.|..
T Consensus 11 kiarlkkdnlqler 24 (52)
T 3he5_B 11 KIARLKKDNLQLER 24 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhh
Confidence 34444444444433
No 229
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=34.17 E-value=1.1e+02 Score=25.35 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 019163 209 LERKVQTLQTEATTLSAQVT 228 (345)
Q Consensus 209 LE~KVq~Lq~EN~~Ls~ql~ 228 (345)
|..+|..|..|+..|..++.
T Consensus 30 l~~~v~~l~~e~k~l~ke~~ 49 (171)
T 2zvf_A 30 LPKTVERFFEEWKDQRKEIE 49 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 230
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=33.65 E-value=66 Score=20.64 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019163 216 LQTEATTLSAQVTMLQR 232 (345)
Q Consensus 216 Lq~EN~~Ls~ql~~Lqr 232 (345)
|+.||..|..++..|.+
T Consensus 5 lefendaleqkiaalkq 21 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQ 21 (28)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHH
Confidence 44444444444444333
No 231
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=33.21 E-value=1.4e+02 Score=21.66 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019163 234 TTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIAT 276 (345)
Q Consensus 234 ~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~ 276 (345)
...|..-|..|-.+++.|+..+ ..++.||.||+..+
T Consensus 6 l~kLKe~n~~L~~kv~~Le~~c-------~~~eQEieRL~~LL 41 (48)
T 3vmx_A 6 ILRLKQINIQLATKIQHLEFSC-------SEKEQEIERLNKLL 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-------cHHHHHHHHHHHHH
Confidence 3445555555555666666433 33446777776554
No 232
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=33.14 E-value=74 Score=20.83 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 019163 208 ELERKVQTLQTEATTL 223 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~L 223 (345)
.||.+...|+.....|
T Consensus 5 alekkcaalesklqal 20 (31)
T 3ljm_A 5 ALEKKCAALESKLQAL 20 (31)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444433333
No 233
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=32.75 E-value=1.7e+02 Score=22.61 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 019163 209 LERKVQTLQTEATTLSAQVTMLQRDTTGLTAE 240 (345)
Q Consensus 209 LE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sE 240 (345)
|...|..|..|+..|..++..+++++..+..|
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~ee 33 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDE 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888999999888888887766533
No 234
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=32.62 E-value=1.9e+02 Score=25.22 Aligned_cols=57 Identities=23% Similarity=0.409 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEV 269 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV 269 (345)
+.+||.-++.--+-...|...|..|.++ |+.|.-.++.-+.++| .|+ ..|+.+++.+
T Consensus 100 LrELEADLKEKDsMVe~LT~TiG~LrKE---LEdEklK~~E~MdSFE---~Lk-vENE~vkerl 156 (167)
T 4gkw_A 100 LGELEADLKEKDSMVESLTETIGILRKE---LENEKLKAAENMDSFE---KLS-MENENLKEKI 156 (167)
T ss_dssp THHHHHTHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH---HHH-HHHHHHHHHH
T ss_pred HHHHHhHHhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH---HHh-hhhHhHHHHH
Confidence 3466666666666666677777766654 4444433333344444 344 6677776543
No 235
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=32.50 E-value=86 Score=25.36 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHhc
Q 019163 263 EALREEVQRLKIATG 277 (345)
Q Consensus 263 E~L~eEV~rLk~a~g 277 (345)
+.-++||.+||..+-
T Consensus 71 q~YEeEI~rLr~eLe 85 (92)
T 3vp9_A 71 DAYEEEIKHLKLGLE 85 (92)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 345578888887654
No 236
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=32.03 E-value=2.2e+02 Score=23.54 Aligned_cols=31 Identities=6% Similarity=0.010 Sum_probs=13.6
Q ss_pred cccchhhccCChhHHHHhhccChHHHHHHHHh
Q 019163 160 ILGDGVKKAVDRDRLAELALIDPKRAKRILAN 191 (345)
Q Consensus 160 ~~~~e~kkim~~e~laEla~~DpKR~KRiLsN 191 (345)
|+..++..+.---.+.++. +--+.+|+++..
T Consensus 41 Y~~~dl~~l~~I~~lr~~G-~sL~eIk~~l~~ 71 (142)
T 3gp4_A 41 FGAEDLRWILFTRQMRRAG-LSIEALIDYLAL 71 (142)
T ss_dssp BCHHHHHHHHHHHHHHHTT-CCHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 3334444443333444332 233555666554
No 237
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=32.01 E-value=2.1e+02 Score=23.42 Aligned_cols=12 Identities=33% Similarity=0.423 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHh
Q 019163 265 LREEVQRLKIAT 276 (345)
Q Consensus 265 L~eEV~rLk~a~ 276 (345)
|..+|..|+..+
T Consensus 109 le~e~~~Lk~~l 120 (129)
T 2fxo_A 109 LEDECSELKRDI 120 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445555555443
No 238
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=31.88 E-value=97 Score=27.79 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 019163 204 RYTSELERKVQTLQTEATTLSAQVTMLQRDTT 235 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~ 235 (345)
++|+-|-.++..|+.+|..|..+...|+++..
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n 176 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLRDWN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888888888888777777666655544
No 239
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.64 E-value=78 Score=31.16 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019163 208 ELERKVQTLQTEATTLSAQ 226 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~q 226 (345)
+|..+++.|+.+...|..+
T Consensus 46 dl~~~lk~le~~~~~L~~e 64 (428)
T 4b4t_K 46 DIYFKLKKLEKEYELLTLQ 64 (428)
T ss_dssp --CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444333
No 240
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=31.58 E-value=13 Score=32.43 Aligned_cols=71 Identities=18% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019163 209 LERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATGQI 279 (345)
Q Consensus 209 LE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~gei 279 (345)
||..+..|.......+..+..+..++..+..+...|...++.++.+.++.++...-|+.++.-.|.+..++
T Consensus 64 le~~~~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLeASReAKKql 134 (146)
T 2xnx_M 64 LEKELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDASREAKKQV 134 (146)
T ss_dssp HTTTTTTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC---------------------
T ss_pred hHhhHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
No 241
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=31.46 E-value=2.1e+02 Score=27.21 Aligned_cols=74 Identities=12% Similarity=0.099 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019163 201 RKIRYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATG 277 (345)
Q Consensus 201 RKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~g 277 (345)
.-+.+|..|...+...+.+...+...|..++.. |......|+.....+.....-..+.-+.|++||+.++..+-
T Consensus 120 ~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~---l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 120 TLKEGITDLRGEIQQNQKYAQQLIEELTKLRDS---IGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 335566666666666666666666666655554 33333334444443333322222334467777877776554
No 242
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=31.41 E-value=80 Score=20.90 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=9.6
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 019163 233 DTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 233 ~~~~L~sEN~eLK~RLQaLE 252 (345)
+...|.+.|-..|+++|+|.
T Consensus 9 rvqalkarnyaakqkvqalr 28 (33)
T 1fmh_B 9 RVQALKARNYAAKQKVQALR 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 33344445555555555544
No 243
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=31.08 E-value=1.4e+02 Score=30.65 Aligned_cols=47 Identities=23% Similarity=0.366 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019163 204 RYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQA 250 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQa 250 (345)
+|.++||.++..|+.....-...|..|+.....+..+-+.|..-|..
T Consensus 111 e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 111 HVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 244
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=30.56 E-value=2e+02 Score=22.79 Aligned_cols=14 Identities=14% Similarity=-0.004 Sum_probs=6.7
Q ss_pred hHHHHHHHHHHHHH
Q 019163 191 NRQSAARSKERKIR 204 (345)
Q Consensus 191 NRESArRSReRKkq 204 (345)
|=+||-.+--|-|+
T Consensus 14 eLQSALeaEIqAKQ 27 (81)
T 1wt6_A 14 ELQEALEEEVLTRQ 27 (81)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555554444444
No 245
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=30.08 E-value=1.4e+02 Score=29.63 Aligned_cols=6 Identities=17% Similarity=0.628 Sum_probs=2.1
Q ss_pred HHHHHH
Q 019163 267 EEVQRL 272 (345)
Q Consensus 267 eEV~rL 272 (345)
..|..|
T Consensus 126 ~~i~~l 131 (409)
T 1m1j_C 126 QKIAQL 131 (409)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 246
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=30.00 E-value=77 Score=21.51 Aligned_cols=7 Identities=29% Similarity=0.259 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 019163 220 ATTLSAQ 226 (345)
Q Consensus 220 N~~Ls~q 226 (345)
...|+.+
T Consensus 16 IddlkrQ 22 (34)
T 1a93_B 16 IDDLKRQ 22 (34)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 247
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=29.08 E-value=1.1e+02 Score=21.54 Aligned_cols=26 Identities=23% Similarity=0.425 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 208 ELERKVQTLQTEATTLSAQVTMLQRD 233 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~ql~~Lqr~ 233 (345)
+|-.++...-.|...-..+|+.|+..
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkK 31 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKK 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555544443
No 248
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=29.01 E-value=1.9e+02 Score=22.08 Aligned_cols=29 Identities=10% Similarity=0.102 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 019163 208 ELERKVQTLQTEATTLSAQVTMLQRDTTG 236 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~ 236 (345)
.+...+..|+.+...++..++...++|..
T Consensus 9 ~~~~~i~~lE~eL~~~r~e~~~ql~EYq~ 37 (74)
T 2xv5_A 9 TSRRLLAEKEREMAEMRARMQQQLDEYQE 37 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433333333
No 249
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=28.79 E-value=78 Score=21.64 Aligned_cols=12 Identities=33% Similarity=0.141 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 019163 235 TGLTAENKELKL 246 (345)
Q Consensus 235 ~~L~sEN~eLK~ 246 (345)
..|+.+|..|..
T Consensus 23 R~LE~~N~~Le~ 34 (39)
T 1gk7_A 23 RFLEQQNKILLA 34 (39)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 250
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=28.77 E-value=67 Score=27.61 Aligned_cols=65 Identities=17% Similarity=0.268 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 209 LERKVQTLQTEATTLSAQVTMLQRDTTGLTAEN---KELKLRLQAMEQQAHLRDALNEALREEVQRLKIA 275 (345)
Q Consensus 209 LE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN---~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a 275 (345)
.|.....++.|...|.+.+ +.+.+..+..++ ..++.+...|+.+..=++.+-+.|.+.+..||..
T Consensus 65 aE~~~~~ie~ElE~LTasL--FeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~v 132 (135)
T 2e7s_A 65 AEEEADKLNKEVEDLTASL--FDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKKV 132 (135)
T ss_dssp HHHTTHHHHHHHHHHHHHH--HHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555554432 223333332222 2233344444444333445555566666666654
No 251
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=28.71 E-value=2.5e+02 Score=23.20 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHH
Q 019163 219 EATTLSAQVTMLQRDTTGLTAENK 242 (345)
Q Consensus 219 EN~~Ls~ql~~Lqr~~~~L~sEN~ 242 (345)
+...|..++..|......|+.|..
T Consensus 19 ei~~L~~ei~eLk~~ve~lEkERD 42 (106)
T 4e61_A 19 TIGSLNEEIEQYKGTVSTLEIERE 42 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333433333444444433
No 252
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=28.69 E-value=2e+02 Score=22.18 Aligned_cols=31 Identities=13% Similarity=0.214 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 019163 208 ELERKVQTLQTEATTLSAQVTMLQRDTTGLT 238 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~ 238 (345)
+|...|..|..|+..|..++..+++++..+.
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888899999999999999998888877665
No 253
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=28.60 E-value=1.8e+02 Score=21.49 Aligned_cols=39 Identities=18% Similarity=0.188 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKEL 244 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eL 244 (345)
+++|...+..-..+....+.+|..|.+....|..|...|
T Consensus 37 ~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 37 FADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666666555555556666666666666666664443
No 254
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=28.39 E-value=5e+02 Score=26.62 Aligned_cols=8 Identities=25% Similarity=0.426 Sum_probs=3.2
Q ss_pred HHHHhHHH
Q 019163 187 RILANRQS 194 (345)
Q Consensus 187 RiLsNRES 194 (345)
..+.+.++
T Consensus 463 ~fl~~~~~ 470 (592)
T 1f5n_A 463 TYLKSKES 470 (592)
T ss_dssp HHHHHTHH
T ss_pred HHHHHHHH
Confidence 33444443
No 255
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=28.38 E-value=1.6e+02 Score=20.76 Aligned_cols=12 Identities=33% Similarity=0.542 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 019163 204 RYTSELERKVQT 215 (345)
Q Consensus 204 qyIeELE~KVq~ 215 (345)
.||.+||.+-..
T Consensus 10 nyiqeleernae 21 (46)
T 3he4_B 10 NYIQELEERNAE 21 (46)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhHH
Confidence 455555554433
No 256
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=28.25 E-value=2.9e+02 Score=23.92 Aligned_cols=12 Identities=58% Similarity=0.675 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHH
Q 019163 262 NEALREEVQRLK 273 (345)
Q Consensus 262 NE~L~eEV~rLk 273 (345)
+..|..||.||+
T Consensus 142 ~~~~~~~~~~~~ 153 (155)
T 2efr_A 142 NYHLENEVARLK 153 (155)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHhh
Confidence 444566777765
No 257
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=28.24 E-value=34 Score=34.95 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=0.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019163 249 QAMEQQAHLRDALNEALREEV 269 (345)
Q Consensus 249 QaLEqq~~LrdalNE~L~eEV 269 (345)
..|+.+..-+++..+.|++|+
T Consensus 422 ~~~~~~~~~~~~e~~~~~~~~ 442 (575)
T 2i1j_A 422 SRIQQEVELKDSETRRLQEEV 442 (575)
T ss_dssp --------------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444434444333
No 258
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=28.17 E-value=4.6e+02 Score=26.12 Aligned_cols=10 Identities=30% Similarity=0.737 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 019163 223 LSAQVTMLQR 232 (345)
Q Consensus 223 Ls~ql~~Lqr 232 (345)
|..++..|++
T Consensus 118 Le~~i~~lk~ 127 (390)
T 1deq_A 118 LRSRIEILRR 127 (390)
T ss_pred HHHHHHHHHH
Confidence 3334444333
No 259
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=28.01 E-value=2e+02 Score=21.88 Aligned_cols=45 Identities=13% Similarity=0.177 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQA 250 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQa 250 (345)
++....+++.|+.+...+..++..++++..-.-..-+.+...+|.
T Consensus 4 m~aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~ 48 (75)
T 3mtu_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQE 48 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 445566667777777777777777666555444444444333333
No 260
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=27.28 E-value=3.9e+02 Score=25.00 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLR 258 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~Lr 258 (345)
++-|+.+-.....|..++-.+|+.|+ .--+.+..||..+|+.....
T Consensus 165 LelL~IRK~ma~sEI~EID~KI~~L~-------~mR~~vl~RLA~lEqdEl~L 210 (242)
T 3uux_B 165 LEFLNIQKNSTLSEIRDIEVEVENLR-------QKKEKLLGKIANIEQNQLLL 210 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhHHHH
Confidence 56677777777777777777766544 34445556888888755444
No 261
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=27.20 E-value=2.4e+02 Score=25.58 Aligned_cols=21 Identities=19% Similarity=0.282 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019163 206 TSELERKVQTLQTEATTLSAQ 226 (345)
Q Consensus 206 IeELE~KVq~Lq~EN~~Ls~q 226 (345)
+.+|..++..+.++...++.+
T Consensus 75 ~~el~d~~lR~~AEfeN~RkR 95 (213)
T 4ani_A 75 LSEMEHRYLRLYADFENFRRR 95 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 262
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=26.52 E-value=83 Score=20.89 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 019163 209 LERKVQTLQTEATTLSAQV 227 (345)
Q Consensus 209 LE~KVq~Lq~EN~~Ls~ql 227 (345)
||..+..|++-..+|..++
T Consensus 4 lee~~r~l~~ivq~lq~r~ 22 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERL 22 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443333
No 263
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=26.52 E-value=46 Score=22.79 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019163 211 RKVQTLQTEATTLSAQVT 228 (345)
Q Consensus 211 ~KVq~Lq~EN~~Ls~ql~ 228 (345)
.+|..|+.+|..|..++.
T Consensus 20 dkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 20 DKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567777777777777664
No 264
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=26.48 E-value=2.2e+02 Score=22.66 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 019163 239 AENKELKLRLQAME 252 (345)
Q Consensus 239 sEN~eLK~RLQaLE 252 (345)
.||..|..++..++
T Consensus 38 ~EN~~Lh~~ie~~~ 51 (83)
T 1wlq_A 38 KENEKLHKEIEQKD 51 (83)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 265
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=26.45 E-value=1.4e+02 Score=23.72 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 203 IRYTSELERKVQTLQTEATTLSAQVTMLQRD 233 (345)
Q Consensus 203 kqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~ 233 (345)
.+.+.+.|.+...|+..|..|..++.+|+.+
T Consensus 48 ~~r~~e~e~r~k~le~~n~~l~~riqELE~q 78 (83)
T 4ath_A 48 QQRAKDLENRQKKLEHANRHLLLRVQELEMQ 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 3556788888999999999999998887665
No 266
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=26.21 E-value=1.1e+02 Score=20.00 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=9.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH
Q 019163 230 LQRDTTGLTAENKELKLRLQAM 251 (345)
Q Consensus 230 Lqr~~~~L~sEN~eLK~RLQaL 251 (345)
|++.+..|++.-..|..+|.++
T Consensus 6 lekkcaalesklqalekkleal 27 (31)
T 3ljm_A 6 LEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443344433
No 267
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=26.19 E-value=2.8e+02 Score=23.12 Aligned_cols=62 Identities=23% Similarity=0.256 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019163 211 RKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKIAT 276 (345)
Q Consensus 211 ~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~ 276 (345)
.-...|+.....|...|..|++....++..-. |..|..-|... |..+...++.+|..++..+
T Consensus 67 ~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~--kF~l~~~Ei~~--Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 67 WTTNELRNGLRSIEWDLEDLEETIGIVEANPG--KFKLPAGDLQE--RKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH--HHCCCHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH--hcCCCHHHHHH--HHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444444444333332111 22233323222 3345666778888877654
No 268
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=25.76 E-value=1.5e+02 Score=29.06 Aligned_cols=78 Identities=21% Similarity=0.300 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 019163 204 RYTSELERKVQTLQTEATTLSAQVTMLQRDTTGLTAE---NKELKLRLQAMEQQAHLRDALNEALREEVQRLKIATGQIP 280 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sE---N~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~a~geip 280 (345)
..|.+|..+...++.+...|.++...+.++...+... -.+|+.++..+. .+++ .+.+.+.+=-+.|...+-.||
T Consensus 30 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~ip 106 (425)
T 2dq3_A 30 DKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELK--EEID-RLEEELRKVEEELKNTLLWIP 106 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHH--HHHH-HHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHHhCC
Confidence 3344455555555555555555555544444332111 112222222222 2233 333333333344555566677
Q ss_pred CCCC
Q 019163 281 AANG 284 (345)
Q Consensus 281 ~~~~ 284 (345)
+...
T Consensus 107 N~~~ 110 (425)
T 2dq3_A 107 NLPH 110 (425)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6533
No 269
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=25.76 E-value=94 Score=25.80 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Q 019163 222 TLSAQVTMLQRDTTGLTAENKELK 245 (345)
Q Consensus 222 ~Ls~ql~~Lqr~~~~L~sEN~eLK 245 (345)
.|..++..|..++..+..|...|+
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~ 52 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLK 52 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 270
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=25.73 E-value=5.3e+02 Score=26.01 Aligned_cols=85 Identities=12% Similarity=0.073 Sum_probs=0.0
Q ss_pred hHHHHhhccChHHHHHHHHhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhHHHH
Q 019163 172 DRLAELALIDPKRAKRILANRQSA--------ARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQ-----RDTTGLT 238 (345)
Q Consensus 172 e~laEla~~DpKR~KRiLsNRESA--------rRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lq-----r~~~~L~ 238 (345)
..|.+| |..-.-|+|..+. +.+=..++.-+.+++..|+.+..+..++...+.... .....|.
T Consensus 100 ~~LqeL-----e~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~ 174 (464)
T 1m1j_B 100 PVLRDL-----KDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLR 174 (464)
T ss_dssp HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hHHHHH-----HHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 019163 239 AENKELKLRLQAMEQQAHLRDAL 261 (345)
Q Consensus 239 sEN~eLK~RLQaLEqq~~Lrdal 261 (345)
..-..|+.+|+.||.........
T Consensus 175 ~~~~~l~~ki~~l~~~~~~~~~~ 197 (464)
T 1m1j_B 175 AVIDSLHKKIQKLENAIATQTDY 197 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
No 271
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=25.62 E-value=24 Score=23.89 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQVTMLQRD 233 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~ 233 (345)
.++.|..|++.|+.++..+..++..+++.
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~~~~~ 33 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVARLKKL 33 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777777776665543
No 272
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=25.31 E-value=2e+02 Score=25.20 Aligned_cols=18 Identities=17% Similarity=0.045 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019163 199 KERKIRYTSELERKVQTL 216 (345)
Q Consensus 199 ReRKkqyIeELE~KVq~L 216 (345)
-++|++|+.||+.+...+
T Consensus 21 I~~K~~~LqeL~~Q~vaf 38 (155)
T 2aze_A 21 IKQKQSQLQELILQQIAF 38 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356677777776655444
No 273
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=25.28 E-value=3e+02 Score=23.07 Aligned_cols=31 Identities=32% Similarity=0.330 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 198 SKERKIRYTSELERKVQTLQTEATTLSAQVT 228 (345)
Q Consensus 198 SReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~ 228 (345)
--.+|++...|+|+++..+..+-..+..++.
T Consensus 55 HE~kklqLkse~e~E~ae~k~KYD~~lqe~e 85 (115)
T 3vem_A 55 FEEKKSILKAELERKMAEVQAEFRRKFHEVE 85 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356778888888888777766665555443
No 274
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=25.25 E-value=2.4e+02 Score=25.50 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 199 KERKIRYTSELERKVQTLQTEATTLSAQVT 228 (345)
Q Consensus 199 ReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~ 228 (345)
+.||.+.|+-|..++..|+.|-..|...+.
T Consensus 14 ~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~ 43 (190)
T 3thf_A 14 KQKMDELIKHLNQKIVSLKREQQTISEECS 43 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666555444
No 275
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=24.93 E-value=2.5e+02 Score=22.30 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 208 ELERKVQTLQTEATTLSAQVTMLQ 231 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~ql~~Lq 231 (345)
.|+.++..|+.+...|..++..+.
T Consensus 5 ~L~~~i~~L~~q~~~L~~ei~~~~ 28 (85)
T 3viq_B 5 QLESRVHLLEQQKEQLESSLQDAL 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555554443
No 276
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=24.80 E-value=1.6e+02 Score=27.08 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019163 237 LTAENKELKLRLQAMEQQ 254 (345)
Q Consensus 237 L~sEN~eLK~RLQaLEqq 254 (345)
...||..|..+|..++.+
T Consensus 113 aLeEN~~Lh~~ie~l~eE 130 (209)
T 2wvr_A 113 ALKENEKLHKEIEQKDNE 130 (209)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555444
No 277
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=24.62 E-value=2.8e+02 Score=22.50 Aligned_cols=49 Identities=12% Similarity=0.294 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 223 LSAQVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREEVQRLKI 274 (345)
Q Consensus 223 Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eEV~rLk~ 274 (345)
+...+..|.+.......-...|..++++|..+..+. ...-.+||..|+.
T Consensus 67 ~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FL---Kk~heeEl~eLq~ 115 (119)
T 3ol1_A 67 AENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL---KKLHEEEIQELQA 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHS
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 344455555555555555556666666666554333 2223367777753
No 278
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=24.45 E-value=3.9e+02 Score=24.08 Aligned_cols=34 Identities=15% Similarity=0.182 Sum_probs=26.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 183 KRAKRILANRQSAARSKERKIRYTSELERKVQTL 216 (345)
Q Consensus 183 KR~KRiLsNRESArRSReRKkqyIeELE~KVq~L 216 (345)
.++-+....|+.|-++-.++++.++.|-.++..-
T Consensus 103 ~~Le~ae~eRe~aL~~el~RlerLe~La~kf~rk 136 (235)
T 2odv_A 103 GKLHVAILEREKQLRSEFERLEALQRIVTKLQME 136 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777889999999999888877776666543
No 279
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=24.25 E-value=2.1 Score=34.82 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH
Q 019163 183 KRAKRILANRQSAARSKERKIR 204 (345)
Q Consensus 183 KR~KRiLsNRESArRSReRKkq 204 (345)
+.+||.-+||.+|++.|.||..
T Consensus 66 rdiRRRgKNkvAAqnCRKRKld 87 (90)
T 2lz1_A 66 RDIRRRGKNKVAAQNCRKRKLE 87 (90)
T ss_dssp HHHHHHSCSCCCCCCCSCCCCS
T ss_pred HHHHHhhhhHHHHHHcchhhcc
Confidence 7788889999999999999864
No 280
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=24.19 E-value=3.6e+02 Score=23.49 Aligned_cols=11 Identities=27% Similarity=0.474 Sum_probs=5.7
Q ss_pred HHHHHHHHHHH
Q 019163 241 NKELKLRLQAM 251 (345)
Q Consensus 241 N~eLK~RLQaL 251 (345)
|..|+..|..+
T Consensus 199 n~~L~~eLp~l 209 (251)
T 2fic_A 199 NVDLQEELPSL 209 (251)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 281
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=23.85 E-value=3.6e+02 Score=24.81 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 019163 216 LQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAMEQQ 254 (345)
Q Consensus 216 Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq 254 (345)
|......+++++..|++....+..|++.+...|....++
T Consensus 169 La~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~ 207 (228)
T 3q0x_A 169 LAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQ 207 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555666666665555554443
No 282
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=23.56 E-value=4.4e+02 Score=24.38 Aligned_cols=51 Identities=16% Similarity=0.249 Sum_probs=28.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 183 KRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVTMLQRD 233 (345)
Q Consensus 183 KR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~~Lqr~ 233 (345)
|+.|+.|.++...-..|.=--..|..||.++...+.++....++|..+.++
T Consensus 110 R~~R~~l~~~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~ 160 (234)
T 3plt_A 110 RDRKEKITDEIAHLKYKDPQSTKIPVLEQELVRAEAESLVAEAQLSNITRE 160 (234)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHhhHHHHHHHHhHHH
Confidence 445555555543222111111345677777777777776666677666664
No 283
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=23.43 E-value=2.5e+02 Score=26.72 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 204 RYTSELERKVQTLQTEATTLSAQV 227 (345)
Q Consensus 204 qyIeELE~KVq~Lq~EN~~Ls~ql 227 (345)
+|+++|+.++..|+.+..++..++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~ 270 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKALKDI 270 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555555555444443
No 284
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=23.42 E-value=45 Score=24.39 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019163 202 KIRYTSELERKVQTLQTEATTL 223 (345)
Q Consensus 202 KkqyIeELE~KVq~Lq~EN~~L 223 (345)
+..|++.|+.+|..|+.....|
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 5578999999998887655544
No 285
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=23.32 E-value=2e+02 Score=20.30 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 019163 222 TLSAQVTMLQRDTTGLTAENKELKLRLQAMEQ 253 (345)
Q Consensus 222 ~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLEq 253 (345)
.|..++.-+-++....+..-.+|+.++..||.
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777777777766664
No 286
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=22.77 E-value=2.9e+02 Score=21.96 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 019163 205 YTSELERKVQTLQTEATTLSAQ 226 (345)
Q Consensus 205 yIeELE~KVq~Lq~EN~~Ls~q 226 (345)
.|..|+.++..|+.+...+..+
T Consensus 9 ~i~~L~~q~~~L~~ei~~~~a~ 30 (85)
T 3viq_B 9 RVHLLEQQKEQLESSLQDALAK 30 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555443
No 287
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=22.53 E-value=1.9e+02 Score=19.85 Aligned_cols=12 Identities=42% Similarity=0.609 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHh
Q 019163 265 LREEVQRLKIAT 276 (345)
Q Consensus 265 L~eEV~rLk~a~ 276 (345)
|+.||.|||...
T Consensus 20 Le~eV~RLk~ll 31 (36)
T 1kd8_B 20 LKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 344455555443
No 288
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=22.45 E-value=1.1e+02 Score=20.95 Aligned_cols=9 Identities=44% Similarity=0.589 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 019163 266 REEVQRLKI 274 (345)
Q Consensus 266 ~eEV~rLk~ 274 (345)
..||.||+.
T Consensus 21 e~EV~RL~~ 29 (36)
T 1kd8_A 21 ENEVARLEK 29 (36)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444443
No 289
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=22.25 E-value=78 Score=23.85 Aligned_cols=43 Identities=23% Similarity=0.318 Sum_probs=21.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 226 QVTMLQRDTTGLTAENKELKLRLQAMEQQAHLRDALNEALREE 268 (345)
Q Consensus 226 ql~~Lqr~~~~L~sEN~eLK~RLQaLEqq~~LrdalNE~L~eE 268 (345)
+|..|..+...++.+-++|...|+.++.|..--+.+-+.++++
T Consensus 13 kI~~L~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E~~ 55 (64)
T 3t97_C 13 KITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEES 55 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555666666666665543333333333333
No 290
>2p0t_A UPF0307 protein pspto_4464; APC85033, conserved putative protein, pseudomonas syringae P STR. DC3000, structural genomics, PSI-2; 2.19A {Pseudomonas syringae PV} SCOP: a.290.1.1
Probab=22.24 E-value=3e+02 Score=24.33 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 019163 196 ARSKERKIRYTSELERK 212 (345)
Q Consensus 196 rRSReRKkqyIeELE~K 212 (345)
...|.|-.+||..|-+.
T Consensus 65 ~earRRQlqyIGKLmR~ 81 (176)
T 2p0t_A 65 NIARKRHILFIGKLMRD 81 (176)
T ss_dssp HHHHHHHHHHHHHHGGG
T ss_pred cHHHHHHHHHHHHHHhc
Confidence 34678999999888765
No 291
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=22.24 E-value=1.4e+02 Score=25.51 Aligned_cols=15 Identities=13% Similarity=0.127 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEAT 221 (345)
Q Consensus 207 eELE~KVq~Lq~EN~ 221 (345)
..||.++..++....
T Consensus 3 ~~l~~~~~~~~~~~~ 17 (192)
T 2gkw_A 3 GLLESQLSRHDQMLS 17 (192)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555544444333
No 292
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=22.24 E-value=4.4e+02 Score=23.84 Aligned_cols=9 Identities=22% Similarity=0.147 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 019163 267 EEVQRLKIA 275 (345)
Q Consensus 267 eEV~rLk~a 275 (345)
.++..++..
T Consensus 143 ~~l~~a~~~ 151 (369)
T 4dk0_A 143 IEVNTAETN 151 (369)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 344444433
No 293
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=21.83 E-value=2.1e+02 Score=22.40 Aligned_cols=15 Identities=47% Similarity=0.660 Sum_probs=8.0
Q ss_pred HHHHHHHHHhcCCCCC
Q 019163 267 EEVQRLKIATGQIPAA 282 (345)
Q Consensus 267 eEV~rLk~a~geip~~ 282 (345)
.+|+-|.. .+.||+.
T Consensus 36 ~~vqaL~~-ag~ip~A 50 (74)
T 1avy_A 36 GDVQALQE-AGYIPEA 50 (74)
T ss_dssp HHHHHHHH-TCCCCCC
T ss_pred hhhHHHHh-cCCCCCC
Confidence 45555654 4555543
No 294
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=21.71 E-value=2e+02 Score=21.56 Aligned_cols=16 Identities=6% Similarity=0.264 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 019163 237 LTAENKELKLRLQAME 252 (345)
Q Consensus 237 L~sEN~eLK~RLQaLE 252 (345)
|..++..|+.++..|+
T Consensus 62 L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 62 MRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555544444433
No 295
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=21.52 E-value=1.5e+02 Score=24.68 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 019163 208 ELERKVQTLQTEATTLSAQVT 228 (345)
Q Consensus 208 ELE~KVq~Lq~EN~~Ls~ql~ 228 (345)
.|+..+..|+.....+..+++
T Consensus 109 ~l~~~l~~l~~~l~~l~~~i~ 129 (151)
T 2zdi_C 109 EYDEAIKKTQGALAELEKRIG 129 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444443333333333
No 296
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=21.47 E-value=3.3e+02 Score=22.18 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 019163 207 SELERKVQTLQTEATTLSAQVTMLQRDTTGLTAENKELKLRLQAME 252 (345)
Q Consensus 207 eELE~KVq~Lq~EN~~Ls~ql~~Lqr~~~~L~sEN~eLK~RLQaLE 252 (345)
.+.|..+..|......|..+|..+..+.......|..|...-..++
T Consensus 65 ~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle 110 (129)
T 2fxo_A 65 ADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLE 110 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444445555555444444444444433333333
No 297
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=21.40 E-value=2.3e+02 Score=20.26 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 019163 209 LERKVQTLQTEATTLSAQ 226 (345)
Q Consensus 209 LE~KVq~Lq~EN~~Ls~q 226 (345)
-|+.|+.|+.+...|..+
T Consensus 10 AERsV~KLek~ID~LEde 27 (52)
T 2z5i_A 10 LENEVARLKKLVDDLEDE 27 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 298
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=21.13 E-value=4.3e+02 Score=23.37 Aligned_cols=55 Identities=15% Similarity=0.236 Sum_probs=30.7
Q ss_pred hhHHHHhhc----cChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 171 RDRLAELAL----IDPKRAKRILANRQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVT 228 (345)
Q Consensus 171 ~e~laEla~----~DpKR~KRiLsNRESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~ 228 (345)
+.+|+||-. .|-+.+-|+|++.... -++|.+|+..+-..+..++.-..-|.+-|.
T Consensus 35 Sa~L~eLirs~~PeDL~~AN~LiK~m~~~---d~~r~e~~~k~~~eLe~V~~nv~LL~EML~ 93 (186)
T 1oxz_A 35 SKMLARLLKSSHPEDLRAANKLIKEMVQE---DQKRMEKISKRVNAIEEVNNNVKLLTEMVM 93 (186)
T ss_dssp HHHHHHHHSCCSHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHhcc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446666542 2446777888776654 355555555555555555554444444444
No 299
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=21.08 E-value=3.3e+02 Score=22.00 Aligned_cols=11 Identities=27% Similarity=0.465 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 019163 223 LSAQVTMLQRD 233 (345)
Q Consensus 223 Ls~ql~~Lqr~ 233 (345)
|..+...|+..
T Consensus 50 iKkq~evl~Et 60 (108)
T 1h7c_A 50 IKKQAEILQES 60 (108)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 300
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=20.93 E-value=2.4e+02 Score=20.21 Aligned_cols=37 Identities=11% Similarity=0.168 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019163 192 RQSAARSKERKIRYTSELERKVQTLQTEATTLSAQVT 228 (345)
Q Consensus 192 RESArRSReRKkqyIeELE~KVq~Lq~EN~~Ls~ql~ 228 (345)
-+-|-||=.|-++-|++||.++..-..++..+...+.
T Consensus 7 aefAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD 43 (52)
T 2z5i_A 7 NYHLENEVARLKKLVDDLEDELYAQKLKYKAISEELD 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3567777777777788888777766655555555544
No 301
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=20.88 E-value=4.1e+02 Score=23.04 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 019163 262 NEALREEVQRLKIATGQI 279 (345)
Q Consensus 262 NE~L~eEV~rLk~a~gei 279 (345)
.+.+..||.++-..++.+
T Consensus 167 ~~~~e~~~~~~~~~~~~~ 184 (202)
T 2p4w_A 167 AEENRQIIEEIFRDIEKI 184 (202)
T ss_dssp HHHCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 345556777776666543
No 302
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=20.68 E-value=3.5e+02 Score=22.10 Aligned_cols=39 Identities=23% Similarity=0.297 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHH----H--HH-HHHHHHHHHHHHHHHHHHHHHH
Q 019163 195 AARSKERKIRYTSE----L--ER-KVQTLQTEATTLSAQVTMLQRD 233 (345)
Q Consensus 195 ArRSReRKkqyIeE----L--E~-KVq~Lq~EN~~Ls~ql~~Lqr~ 233 (345)
.+.-++.|+.||.| | .. ....|+.-+.+|...|..|+.+
T Consensus 19 ~q~e~EeKkkiLaER~~pL~id~l~~~~L~e~~keLh~~I~~lEeE 64 (107)
T 1ytz_T 19 KQTARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTE 64 (107)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCSSSCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33445567777775 1 11 1234555556666665554443
No 303
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.32 E-value=1.1e+02 Score=30.13 Aligned_cols=9 Identities=22% Similarity=0.682 Sum_probs=4.9
Q ss_pred HHHHHHHHH
Q 019163 265 LREEVQRLK 273 (345)
Q Consensus 265 L~eEV~rLk 273 (345)
+++|+.+|+
T Consensus 58 ~~~e~~~l~ 66 (405)
T 4b4t_J 58 IKDELRLLQ 66 (405)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHhc
Confidence 445665554
Done!