BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019164
(345 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O7R|A Chain A, Plant Carboxylesterase Aecxe1 From Actinidia Eriantha With
Acyl Adduct
pdb|2O7V|A Chain A, Carboxylesterase Aecxe1 From Actinidia Eriantha Covalently
Inhibited By Paraoxon
Length = 338
Score = 341 bits (874), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 177/346 (51%), Positives = 230/346 (66%), Gaps = 14/346 (4%)
Query: 1 MSDD---KTAPSDSTIDPFNQLQIIQNDDGTITRNWTNFPSTVATPNIPDEHHHTLDVLS 57
MS+D T SD + L I+ N D TITR PST A+P+ VL+
Sbjct: 1 MSNDHLETTGSSDPNTNLLKYLPIVLNPDRTITRP-IQIPSTAASPDPTSSS----PVLT 55
Query: 58 KDVPVNQSKHTWVRIFVPCQALDPSSTAQLPLIVHFHGGGFVVLSAATSLFHDFCSNIAA 117
KD+ +N +T+VR+F+P AL ++A+LPL+V+FHGGGF++ SAA+++FHDFC +A
Sbjct: 56 KDLALNPLHNTFVRLFLPRHAL--YNSAKLPLVVYFHGGGFILFSAASTIFHDFCCEMAV 113
Query: 118 KVPAVVASVEYRLAPEHRLPAAYDDAMEVLHWIKKTQEDWLHKYVDLSRCFLMGDSSGGN 177
V+ASV+YRLAPEHRLPAAYDDAME L WIK ++++WL + D S CF+MG+S+GGN
Sbjct: 114 HAGVVIASVDYRLAPEHRLPAAYDDAMEALQWIKDSRDEWLTNFADFSNCFIMGESAGGN 173
Query: 178 IAYHAGLRASAQVDDLLPLKIRGLILNYPFFGGVKRTESELRLVNDPFLPLCVNDLMWEL 237
IAYHAGLRA+A D+LLPLKI+GL+L+ P FGG KRT SELRL ND LP V DL+WEL
Sbjct: 174 IAYHAGLRAAAVADELLPLKIKGLVLDEPGFGGSKRTGSELRLANDSRLPTFVLDLIWEL 233
Query: 238 ALPIGVDRDNEYCNPTVGGGSKL-LDHIRMLGWNVMVSGSSEDPLIDRQIEFVKMMERKG 296
+LP+G DRD+EYCNPT D IR LGW VMV G DP+IDRQ+E + +E+KG
Sbjct: 234 SLPMGADRDHEYCNPTAESEPLYSFDKIRSLGWRVMVVGCHGDPMIDRQMELAERLEKKG 293
Query: 297 VKVICHLDQGGKHGFDDSDPVSAAKRRAVLDCIKDFVLSSADNRFR 342
V V+ D GG H DP A + +L K FV+ S + +
Sbjct: 294 VDVVAQFDVGGYHAVKLEDPEKAKQFFVIL---KKFVVDSCTTKLK 336
>pdb|3EBL|A Chain A, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|B Chain B, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|C Chain C, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|D Chain D, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|E Chain E, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3EBL|F Chain F, Crystal Structure Of Rice Gid1 Complexed With Ga4
pdb|3ED1|A Chain A, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|B Chain B, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|C Chain C, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|D Chain D, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|E Chain E, Crystal Structure Of Rice Gid1 Complexed With Ga3
pdb|3ED1|F Chain F, Crystal Structure Of Rice Gid1 Complexed With Ga3
Length = 365
Score = 134 bits (337), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 138/302 (45%), Gaps = 35/302 (11%)
Query: 20 QIIQNDDGTITRNWTNFPSTVATPNIPDEHHHTLDVLSKDVPVNQSKHTWVRIFVPCQAL 79
I++ DGT R+ + +P V S D ++QS VRI+
Sbjct: 31 NILRRADGTFERDLGEYLDR----RVPANARPLEGVSSFDHIIDQSVGLEVRIYRAAAEG 86
Query: 80 DPSSTAQ------------------LPLIVHFHGGGFVVLSAATSLFHDFCSNIAAKVPA 121
D A P+I+ FHGG FV SA+++++ C
Sbjct: 87 DAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKG 146
Query: 122 VVASVEYRLAPEHRLPAAYDDAMEVLHWIKKTQEDWLHKYVDL-SRCFLMGDSSGGNIAY 180
VV SV YR APEHR P AYDD L W+ + ++ D +R FL GDSSGGNIA+
Sbjct: 147 VVVSVNYRRAPEHRYPCAYDDGWTALKWV--MSQPFMRSGGDAQARVFLSGDSSGGNIAH 204
Query: 181 HAGLRASAQVDDLLPLKIRGLILNYPFFGGVKRTESELRLVNDPFLPLCVNDLMWELALP 240
H +RA+ + +K+ G IL FGG +RTESE RL F+ L D W+ LP
Sbjct: 205 HVAVRAADE-----GVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLP 259
Query: 241 IGVDRDNEYCNPTVGGGSKLLDHIRMLGWNVMVSGSSEDPLIDRQIEFVKMMERKG--VK 298
DRD+ CNP G + L + ++VSG D DRQ+ + + G VK
Sbjct: 260 EDADRDHPACNP-FGPNGRRLGGLPFAKSLIIVSGL--DLTCDRQLAYADALREDGHHVK 316
Query: 299 VI 300
V+
Sbjct: 317 VV 318
>pdb|2ZSH|A Chain A, Structural Basis Of Gibberellin(Ga3)-Induced Della
Recognition By The Gibberellin Receptor
pdb|2ZSI|A Chain A, Structural Basis Of Gibberellin(Ga4)-Induced Della
Recognition By The Gibberellin Receptor
Length = 351
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 105/328 (32%), Positives = 152/328 (46%), Gaps = 37/328 (11%)
Query: 2 SDDKTAPSDSTIDPFNQLQIIQN----------DDGTITRNWTNFPSTVATPNIPDEHHH 51
SD+ T+ P N +I N DGT R+ + T N +
Sbjct: 11 SDEVNLIESRTVVPLNTWVLISNFKVAYNILRRPDGTFNRHLAEYLDRKVTANA----NP 66
Query: 52 TLDVLSKDVPVNQSKHTWVRIFVPCQA--------LD---PSSTAQLPLIVHFHGGGFVV 100
V S DV +++ + R++ P A LD P +P+I+ FHGG F
Sbjct: 67 VDGVFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAH 126
Query: 101 LSAATSLFHDFCSNIAAKVPAVVASVEYRLAPEHRLPAAYDDAMEVLHWIKKTQEDWLHK 160
SA ++++ C + VV SV YR APE+ P AYDD L+W+ WL
Sbjct: 127 SSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWV--NSRSWLKS 184
Query: 161 YVDLS-RCFLMGDSSGGNIAYHAGLRASAQVDDLLPLKIRGLILNYPFFGGVKRTESELR 219
D FL GDSSGGNIA++ LRA D+L G IL P FGG +RTESE
Sbjct: 185 KKDSKVHIFLAGDSSGGNIAHNVALRAGESGIDVL-----GNILLNPMFGGNERTESEKS 239
Query: 220 LVNDPFLPLCVNDLMWELALPIGVDRDNEYCNPTVGGGSKLLDHIRMLGWNVMVSGSSED 279
L F+ + D W+ LP G DR++ CNP G K L+ + V+V+G D
Sbjct: 240 LDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRG-KSLEGVSFPKSLVVVAGL--D 296
Query: 280 PLIDRQIEFVKMMERKGVKV-ICHLDQG 306
+ D Q+ + + +++ G +V + HL++
Sbjct: 297 LIRDWQLAYAEGLKKAGQEVKLMHLEKA 324
>pdb|1JJI|A Chain A, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|B Chain B, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|C Chain C, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
pdb|1JJI|D Chain D, The Crystal Structure Of A Hyper-Thermophilic
Carboxylesterase From The Archaeon Archaeoglobus
Fulgidus
Length = 311
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 114/246 (46%), Gaps = 32/246 (13%)
Query: 88 PLIVHFHGGGFVVLSAATSLFHD-FCSNIAAKVPAVVASVEYRLAPEHRLPAAYDDAMEV 146
P++V++HGGGFV+ S + HD C IA + V SV+YRLAPEH+ PAA D +
Sbjct: 80 PVLVYYHGGGFVICSIES---HDALCRRIARLSNSTVVSVDYRLAPEHKFPAAVYDCYDA 136
Query: 147 LHWIKKTQEDWLHKYVDLSRCFLMGDSSGGNIAYHAGLRASAQVDDLLPLKIRGLILNYP 206
W+ + E+ +D S+ F+ GDS+GGN+A + A +D I+ IL YP
Sbjct: 137 TKWVAENAEELR---IDPSKIFVGGDSAGGNLAAAVSIMARDSGEDF----IKHQILIYP 189
Query: 207 FFGGVKRTESELRLVNDPFLPLCVNDLMWELALPI-------GVDRDNEYCNPTVGGGSK 259
V T S L + +W L I R+ + NP S
Sbjct: 190 VVNFVAPTPSLLEF----------GEGLWILDQKIMSWFSEQYFSREEDKFNPL---ASV 236
Query: 260 LLDHIRMLGWNVMVSGSSEDPLIDRQIEFVKMMERKGVKVICHLDQGGKHGFDDSDPVSA 319
+ + L ++++ DPL D F +M+ R GV+ +G HGF + PV
Sbjct: 237 IFADLENLPPALIITAEY-DPLRDEGEVFGQMLRRAGVEASIVRYRGVLHGFINYYPVLK 295
Query: 320 AKRRAV 325
A R A+
Sbjct: 296 AARDAI 301
>pdb|2YH2|A Chain A, Pyrobaculum Calidifontis Esterase Monoclinic Form
pdb|2YH2|B Chain B, Pyrobaculum Calidifontis Esterase Monoclinic Form
pdb|2YH2|C Chain C, Pyrobaculum Calidifontis Esterase Monoclinic Form
pdb|2YH2|D Chain D, Pyrobaculum Calidifontis Esterase Monoclinic Form
pdb|3ZWQ|A Chain A, Hyperthermophilic Esterase From The Archeon Pyrobaculum
Calidifontis
pdb|3ZWQ|B Chain B, Hyperthermophilic Esterase From The Archeon Pyrobaculum
Calidifontis
Length = 313
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 114/249 (45%), Gaps = 22/249 (8%)
Query: 81 PSSTAQLPLIVHFHGGGFVVLSAATSLFHD-FCSNIAAKVPAVVASVEYRLAPEHRLPAA 139
P +LP +V++HGGGFV+ S T HD C +A AVV SV+YRLAPEH+ PAA
Sbjct: 70 PRDGERLPAVVYYHGGGFVLGSVET---HDHVCRRLANLSGAVVVSVDYRLAPEHKFPAA 126
Query: 140 YDDAMEVLHWIKKTQEDWLHKYVDLSRCFLMGDSSGGNIAYHAGLRASAQVDDLLPLKIR 199
+DA + W+ +++ VD + + GDS+GGN+A + A + + + +
Sbjct: 127 VEDAYDAAKWVA---DNYDKLGVDNGKIAVAGDSAGGNLAAVTAIMARDRGESFVKYQ-- 181
Query: 200 GLILNYPFFGGVKR-TESELRLVNDPFLPLCVNDLMWELALPIGVDRD--NEYCNPTVGG 256
+L YP T S + ++ L + + W +D + Y +P
Sbjct: 182 --VLIYPAVNLTGSPTVSRVEYSGPEYVILTADLMAWFGRQYFSKPQDALSPYASPIFAD 239
Query: 257 GSKLLDHIRMLGWNVMVSGSSEDPLIDRQIEFVKMMERKGVKVICHLDQGGKHGFDDSDP 316
S L +V + DPL D + +++ +GV+ + G HGF + P
Sbjct: 240 LSNLPP--------ALVITAEYDPLRDEGELYAHLLKTRGVRAVAVRYNGVIHGFVNFYP 291
Query: 317 VSAAKRRAV 325
+ R AV
Sbjct: 292 ILEEGREAV 300
>pdb|1QZ3|A Chain A, Crystal Structure Of Mutant M211sR215L OF CARBOXYLESTERASE
Est2 Complexed With Hexadecanesulfonate
pdb|1U4N|A Chain A, Crystal Structure Analysis Of The M211sR215L EST2 MUTANT
Length = 310
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 69/111 (62%), Gaps = 12/111 (10%)
Query: 70 VRIFVPCQALDPSSTAQLPLIVHFHGGGFVVLSAATSLFHD-FCSNIAAKVPAVVASVEY 128
VR++ P + ++P P +V++HGGG+VV T HD C +A AVV SV+Y
Sbjct: 62 VRMYRP-EGVEPP----YPALVYYHGGGWVVGDLET---HDPVCRVLAKDGRAVVFSVDY 113
Query: 129 RLAPEHRLPAAYDDAMEVLHWIKKTQEDWLHKYVDLSRCFLMGDSSGGNIA 179
RLAPEH+ PAA +DA + L WI + D+ ++D +R + GDS+GGN+A
Sbjct: 114 RLAPEHKFPAAVEDAYDALQWIAERAADF---HLDPARIAVGGDSAGGNLA 161
>pdb|1EVQ|A Chain A, The Crystal Structure Of The Thermophilic Carboxylesterase
Est2 From Alicyclobacillus Acidocaldarius
Length = 310
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/93 (46%), Positives = 60/93 (64%), Gaps = 7/93 (7%)
Query: 88 PLIVHFHGGGFVVLSAATSLFHD-FCSNIAAKVPAVVASVEYRLAPEHRLPAAYDDAMEV 146
P +V++HGGG+VV T HD C +A AVV SV+YRLAPEH+ PAA +DA +
Sbjct: 75 PALVYYHGGGWVVGDLET---HDPVCRVLAKDGRAVVFSVDYRLAPEHKFPAAVEDAYDA 131
Query: 147 LHWIKKTQEDWLHKYVDLSRCFLMGDSSGGNIA 179
L WI + D+ ++D +R + GDS+GGN+A
Sbjct: 132 LQWIAERAADF---HLDPARIAVGGDSAGGNLA 161
>pdb|2HM7|A Chain A, Crystal Structure Analysis Of The G84s Est2 Mutant
Length = 310
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 68/111 (61%), Gaps = 12/111 (10%)
Query: 70 VRIFVPCQALDPSSTAQLPLIVHFHGGGFVVLSAATSLFHD-FCSNIAAKVPAVVASVEY 128
VR++ P + ++P P +V++HGG +VV T HD C +A AVV SV+Y
Sbjct: 62 VRMYRP-EGVEPP----YPALVYYHGGSWVVGDLET---HDPVCRVLAKDGRAVVFSVDY 113
Query: 129 RLAPEHRLPAAYDDAMEVLHWIKKTQEDWLHKYVDLSRCFLMGDSSGGNIA 179
RLAPEH+ PAA +DA + L WI + D+ ++D +R + GDS+GGN+A
Sbjct: 114 RLAPEHKFPAAVEDAYDALQWIAERAADF---HLDPARIAVGGDSAGGNLA 161
>pdb|2C7B|A Chain A, The Crystal Structure Of Este1, A New Thermophilic And
Thermostable Carboxylesterase Cloned From A Metagenomic
Library
pdb|2C7B|B Chain B, The Crystal Structure Of Este1, A New Thermophilic And
Thermostable Carboxylesterase Cloned From A Metagenomic
Library
Length = 311
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 58/100 (58%), Gaps = 7/100 (7%)
Query: 81 PSSTAQLPLIVHFHGGGFVVLSAATSLFHD-FCSNIAAKVPAVVASVEYRLAPEHRLPAA 139
P A LP ++++HGGGFV S T HD C ++ +VV SV+YRLAPE++ P A
Sbjct: 67 PKKAAGLPAVLYYHGGGFVFGSIET---HDHICRRLSRLSDSVVVSVDYRLAPEYKFPTA 123
Query: 140 YDDAMEVLHWIKKTQEDWLHKYVDLSRCFLMGDSSGGNIA 179
+DA L W+ ++ VD R + GDS+GGN+A
Sbjct: 124 VEDAYAALKWVADRADEL---GVDPDRIAVAGDSAGGNLA 160
>pdb|3K6K|A Chain A, Crystal Structure At 2.2 Angstrom Of Hsl-Homolog Este7
From A Metagenome Library
pdb|3K6K|B Chain B, Crystal Structure At 2.2 Angstrom Of Hsl-Homolog Este7
From A Metagenome Library
pdb|3K6K|C Chain C, Crystal Structure At 2.2 Angstrom Of Hsl-Homolog Este7
From A Metagenome Library
pdb|3K6K|D Chain D, Crystal Structure At 2.2 Angstrom Of Hsl-Homolog Este7
From A Metagenome Library
Length = 322
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 131/298 (43%), Gaps = 45/298 (15%)
Query: 9 SDSTIDPFNQLQIIQNDDGTITRNWTNFPSTVATPNIP-DEHHHTLDVLSKDVPVNQSKH 67
+D+ +DP + LQ+++ + + A N+P D+ ++ L + P +
Sbjct: 12 TDTKMDPRDFLQLLKIN------------AEKAEKNLPLDQKRAGMEALCERFPRAEGVE 59
Query: 68 TWVRIF--VPC--QALDPSSTAQLPLIVHFHGGGFVVLSAATSLFHDFCSNIAAKVPAVV 123
+ VPC QA D + A I++FHGGG++ S +T L + +A + A +
Sbjct: 60 LTLTDLGGVPCIRQATDGAGAAH---ILYFHGGGYISGSPSTHLV--LTTQLAKQSSATL 114
Query: 124 ASVEYRLAPEHRLPAAYDDAMEVLHWIKKTQEDWLHKYVDLSRCFLMGDSSGGNIAYHAG 183
S++YRLAPE+ PAA DD + + KT R + GDS+GG + +
Sbjct: 115 WSLDYRLAPENPFPAAVDDCVAAYRALLKTAG-------SADRIIIAGDSAGGGLTTASM 167
Query: 184 LRASAQVDDLLPLKIRGLILNYPFFGGVKRTESELRLVNDPFL--PLCVNDLMWELALPI 241
L+A +D LP+ GL++ PF S L + FL P + + M EL +
Sbjct: 168 LKAK---EDGLPMPA-GLVMLSPFVDLTLSRWSNSNLADRDFLAEPDTLGE-MSELYVG- 221
Query: 242 GVDRDNEYCNPTVGGGSKLLDHIRMLGWNVMVSGSSEDPLIDRQIEFVKMMERKGVKV 299
G DR N +P S L + + +G SE+ L+ + GV V
Sbjct: 222 GEDRKNPLISPVYADLSGLPEMLIHVG--------SEEALLSDSTTLAERAGAAGVSV 271
>pdb|3DNM|A Chain A, Crystal Structure Hormone-Sensitive Lipase From A
Metagenome Library
pdb|3DNM|B Chain B, Crystal Structure Hormone-Sensitive Lipase From A
Metagenome Library
pdb|3DNM|C Chain C, Crystal Structure Hormone-Sensitive Lipase From A
Metagenome Library
pdb|3DNM|D Chain D, Crystal Structure Hormone-Sensitive Lipase From A
Metagenome Library
Length = 336
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/298 (26%), Positives = 131/298 (43%), Gaps = 45/298 (15%)
Query: 9 SDSTIDPFNQLQIIQNDDGTITRNWTNFPSTVATPNIP-DEHHHTLDVLSKDVPVNQSKH 67
+D+ +DP + LQ+++ + + A N+P D+ ++ L + P +
Sbjct: 26 TDTKMDPRDFLQLLKIN------------AEKAEKNLPLDQKRAGMEALCERFPRAEGVE 73
Query: 68 TWVRIF--VPC--QALDPSSTAQLPLIVHFHGGGFVVLSAATSLFHDFCSNIAAKVPAVV 123
+ VPC QA D + A I++FHGGG++ S +T L + +A + A +
Sbjct: 74 LTLTDLGGVPCIRQATDGAGAAH---ILYFHGGGYISGSPSTHLV--LTTQLAKQSSATL 128
Query: 124 ASVEYRLAPEHRLPAAYDDAMEVLHWIKKTQEDWLHKYVDLSRCFLMGDSSGGNIAYHAG 183
S++YRLAPE+ PAA DD + + KT R + GDS+GG + +
Sbjct: 129 WSLDYRLAPENPFPAAVDDCVAAYRALLKTAG-------SADRIIIAGDSAGGGLTTASM 181
Query: 184 LRASAQVDDLLPLKIRGLILNYPFFGGVKRTESELRLVNDPFL--PLCVNDLMWELALPI 241
L+A +D LP+ GL++ PF S L + FL P + + M EL +
Sbjct: 182 LKAK---EDGLPMPA-GLVMLSPFVDLTLSRWSNSNLADRDFLAEPDTLGE-MSELYVG- 235
Query: 242 GVDRDNEYCNPTVGGGSKLLDHIRMLGWNVMVSGSSEDPLIDRQIEFVKMMERKGVKV 299
G DR N +P S L + + +G SE+ L+ + GV V
Sbjct: 236 GEDRKNPLISPVYADLSGLPEMLIHVG--------SEEALLSDSTTLAERAGAAGVSV 285
>pdb|1LZK|A Chain A, Bacterial Heroin Esterase Complex With Transition State
Analog Dimethylarsenic Acid
Length = 323
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 104/244 (42%), Gaps = 24/244 (9%)
Query: 74 VPCQALDPSSTA-QLPLIVHFHGGGFVVLSAATSLFHDFCSNIAAKVPAVVASVEYRLAP 132
V + + P +TA +P+++ HGGGF + +A +S FC +A ++ VA+VEYRLAP
Sbjct: 65 VKIRFVTPDNTAGPVPVLLWIHGGGFAIGTAESS--DPFCVEVARELGFAVANVEYRLAP 122
Query: 133 EHRLPAAYDDAMEVLHWIKKTQEDWLHKYVDLSRCFLMGDSSGGNIAYHAGLRASAQVDD 192
E P +D L +I E+ +D SR + G S+GG +A AG A+ +
Sbjct: 123 ETTFPGPVNDCYAALLYIHAHAEEL---GIDPSRIAVGGQSAGGGLA--AGTVLKARDEG 177
Query: 193 LLPLKIRGLILNYPFFGGVKRTESELRLVNDPFLPLCVNDLMWELALPIGVDRDNEYCNP 252
++P+ + L P T S V+ P L W+ L Y P
Sbjct: 178 VVPVAFQ--FLEIPELDDRLETVSXTNFVDTPLWHRPNAILSWKYYL------GESYSGP 229
Query: 253 ------TVGGGSKLLDHIRMLGWNVMVSGSSEDPLIDRQIEFVKMMERKGVKVICHLDQG 306
S+ D + +S DPL D IE+ + + GV V H G
Sbjct: 230 EDPDVSIYAAPSRATDLTGLP--PTYLSTXELDPLRDEGIEYALRLLQAGVSVELHSFPG 287
Query: 307 GKHG 310
HG
Sbjct: 288 TFHG 291
>pdb|1LZL|A Chain A, Bacterial Heroin Esterase
Length = 323
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 104/244 (42%), Gaps = 24/244 (9%)
Query: 74 VPCQALDPSSTA-QLPLIVHFHGGGFVVLSAATSLFHDFCSNIAAKVPAVVASVEYRLAP 132
V + + P +TA +P+++ HGGGF + +A +S FC +A ++ VA+VEYRLAP
Sbjct: 65 VKIRFVTPDNTAGPVPVLLWIHGGGFAIGTAESS--DPFCVEVARELGFAVANVEYRLAP 122
Query: 133 EHRLPAAYDDAMEVLHWIKKTQEDWLHKYVDLSRCFLMGDSSGGNIAYHAGLRASAQVDD 192
E P +D L +I E+ +D SR + G S+GG +A AG A+ +
Sbjct: 123 ETTFPGPVNDCYAALLYIHAHAEEL---GIDPSRIAVGGQSAGGGLA--AGTVLKARDEG 177
Query: 193 LLPLKIRGLILNYPFFGGVKRTESELRLVNDPFLPLCVNDLMWELALPIGVDRDNEYCNP 252
++P+ + L P T S V+ P L W+ L Y P
Sbjct: 178 VVPVAFQ--FLEIPELDDRLETVSMTNFVDTPLWHRPNAILSWKYYL------GESYSGP 229
Query: 253 ------TVGGGSKLLDHIRMLGWNVMVSGSSEDPLIDRQIEFVKMMERKGVKVICHLDQG 306
S+ D + +S DPL D IE+ + + GV V H G
Sbjct: 230 EDPDVSIYAAPSRATDLTGL--PPTYLSTMELDPLRDEGIEYALRLLQAGVSVELHSFPG 287
Query: 307 GKHG 310
HG
Sbjct: 288 TFHG 291
>pdb|3AIM|A Chain A, R267e Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIM|B Chain B, R267e Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIM|C Chain C, R267e Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIM|D Chain D, R267e Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
Length = 323
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 11/133 (8%)
Query: 74 VPCQALDPSSTAQLPLIVHFHGGGFVVLSAATSLFHDFCSNIAAKVPAVVASVEYRLAPE 133
+ + P + ++V++HGGGFV+ + + C I V SV+YRLAPE
Sbjct: 77 IKARVYYPKTQGPYGVLVYYHGGGFVLGDIES--YDPLCRAITNSCQCVTISVDYRLAPE 134
Query: 134 HRLPAAYDDAMEVLHWIKKTQEDWLHKYVDLSRCFLMGDSSGGNIAYHAGLRASAQVDDL 193
++ PAA D+ + L W+ E + KY + GDS+GGN+A + + +
Sbjct: 135 NKFPAAVVDSFDALKWVYNNSEKFNGKY----GIAVGGDSAGGNLAAVTAILSKKE---- 186
Query: 194 LPLKIRGLILNYP 206
+K++ +L YP
Sbjct: 187 -NIKLKYQVLIYP 198
>pdb|3AIK|A Chain A, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIK|B Chain B, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIK|C Chain C, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIK|D Chain D, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIL|A Chain A, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii Complexed With Paraoxon
pdb|3AIL|B Chain B, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii Complexed With Paraoxon
pdb|3AIL|C Chain C, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii Complexed With Paraoxon
pdb|3AIL|D Chain D, Crystal Structure Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii Complexed With Paraoxon
Length = 323
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 11/133 (8%)
Query: 74 VPCQALDPSSTAQLPLIVHFHGGGFVVLSAATSLFHDFCSNIAAKVPAVVASVEYRLAPE 133
+ + P + ++V++HGGGFV+ + + C I V SV+YRLAPE
Sbjct: 77 IKARVYYPKTQGPYGVLVYYHGGGFVLGDIES--YDPLCRAITNSCQCVTISVDYRLAPE 134
Query: 134 HRLPAAYDDAMEVLHWIKKTQEDWLHKYVDLSRCFLMGDSSGGNIAYHAGLRASAQVDDL 193
++ PAA D+ + L W+ E + KY + GDS+GGN+A + + +
Sbjct: 135 NKFPAAVVDSFDALKWVYNNSEKFNGKY----GIAVGGDSAGGNLAAVTAILSKKE---- 186
Query: 194 LPLKIRGLILNYP 206
+K++ +L YP
Sbjct: 187 -NIKLKYQVLIYP 198
>pdb|3AIO|A Chain A, R267k Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIO|B Chain B, R267k Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIO|C Chain C, R267k Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIO|D Chain D, R267k Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
Length = 323
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 11/133 (8%)
Query: 74 VPCQALDPSSTAQLPLIVHFHGGGFVVLSAATSLFHDFCSNIAAKVPAVVASVEYRLAPE 133
+ + P + ++V++HGGGFV+ + + C I V SV+YRLAPE
Sbjct: 77 IKARVYYPKTQGPYGVLVYYHGGGFVLGDIES--YDPLCRAITNSCQCVTISVDYRLAPE 134
Query: 134 HRLPAAYDDAMEVLHWIKKTQEDWLHKYVDLSRCFLMGDSSGGNIAYHAGLRASAQVDDL 193
++ PAA D+ + L W+ E + KY + GDS+GGN+A + + +
Sbjct: 135 NKFPAAVVDSFDALKWVYNNSEKFNGKY----GIAVGGDSAGGNLAAVTAILSKKE---- 186
Query: 194 LPLKIRGLILNYP 206
+K++ +L YP
Sbjct: 187 -NIKLKYQVLIYP 198
>pdb|3AIN|A Chain A, R267g Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIN|B Chain B, R267g Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIN|C Chain C, R267g Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
pdb|3AIN|D Chain D, R267g Mutant Of A Hsl-Like Carboxylesterase From
Sulfolobus Tokodaii
Length = 323
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 11/133 (8%)
Query: 74 VPCQALDPSSTAQLPLIVHFHGGGFVVLSAATSLFHDFCSNIAAKVPAVVASVEYRLAPE 133
+ + P + ++V++HGGGFV+ + + C I V SV+YRLAPE
Sbjct: 77 IKARVYYPKTQGPYGVLVYYHGGGFVLGDIES--YDPLCRAITNSCQCVTISVDYRLAPE 134
Query: 134 HRLPAAYDDAMEVLHWIKKTQEDWLHKYVDLSRCFLMGDSSGGNIAYHAGLRASAQVDDL 193
++ PAA D+ + L W+ E + KY + GDS+GGN+A + + +
Sbjct: 135 NKFPAAVVDSFDALKWVYNNSEKFNGKY----GIAVGGDSAGGNLAAVTAILSKKE---- 186
Query: 194 LPLKIRGLILNYP 206
+K++ +L YP
Sbjct: 187 -NIKLKYQVLIYP 198
>pdb|1JKM|B Chain B, Brefeldin A Esterase, A Bacterial Homologue Of Human
Hormone Sensitive Lipase
pdb|1JKM|A Chain A, Brefeldin A Esterase, A Bacterial Homologue Of Human
Hormone Sensitive Lipase
Length = 361
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 105/242 (43%), Gaps = 34/242 (14%)
Query: 87 LPLIVHFHGGGFVVLSAATSLFHDFCSNIAAKVPAVVASVEYRLA----PEHRLPAAYDD 142
LP +V+ HGGG +L+ + +C+++AA +VV V++R A H P+ +D
Sbjct: 109 LPGLVYTHGGGMTILTTDNRVHRRWCTDLAAA-GSVVVMVDFRNAWTAEGHHPFPSGVED 167
Query: 143 AMEVLHWIKKTQEDWLHKYVDLSRCFLMGDSSGGNIAYHAGLRAS--AQVDDLLPLKIRG 200
+ + W+ + +E + LS + G+S GGN+A L A ++D I G
Sbjct: 168 CLAAVLWVDEHRES-----LGLSGVVVQGESGGGNLAIATTLLAKRRGRLD-----AIDG 217
Query: 201 LILNYPFFGGVKRTESELRLVNDPFLPLCVND----------LMWELALPIGVDRDNEYC 250
+ + P+ G + E RL P L ND L+ P G ++
Sbjct: 218 VYASIPYISGGYAWDHERRLTELP--SLVENDGYFIENGGMALLVRAYDPTGEHAEDPIA 275
Query: 251 NPTVGGGSKLLDHIRMLGWNVMVSGSSEDPLIDRQIEFVKMMERKGVKVICHLDQGGKHG 310
P D +R L +V+ + DPL D I F + + R GV V ++ G HG
Sbjct: 276 WPYFAS----EDELRGLP-PFVVAVNELDPLRDEGIAFARRLARAGVDVAARVNIGLVHG 330
Query: 311 FD 312
D
Sbjct: 331 AD 332
>pdb|3QH4|A Chain A, Crystal Structure Of Esterase Lipw From Mycobacterium
Marinum
Length = 317
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 88 PLIVHFHGGGFVVLSAATSLFHDFCSNIAAKVPAVVASVEYRLAPEHRLPAAYDDAMEVL 147
P++V+ H GGF + + T H C +A + V SV+YRLAPEH PAA DA+EVL
Sbjct: 86 PVVVYCHAGGFALGNLDTD--HRQCLELARRARCAVVSVDYRLAPEHPYPAALHDAIEVL 143
Query: 148 HWI 150
W+
Sbjct: 144 TWV 146
>pdb|3FAK|A Chain A, Structural And Functional Analysis Of A Hormone-Sensitive
Lipase Like Este5 From A Metagenome Library
pdb|3G9T|A Chain A, Crystal Structure Of Este5, Was Soaked By P-Nitrophenyl
Butyrate For 5sec
pdb|3G9U|A Chain A, Crystal Structure Of Este5, Was Soaked By P-nitrophenyl
Butyrate For 5min
pdb|3G9Z|A Chain A, Crystal Structure Of Este5, Was Soaked By P-Nitrophenyl
Caprylate
pdb|3H17|A Chain A, Crystal Structure Of Este5-Pmsf (I)
pdb|3H18|A Chain A, Crystal Structure Of Este5-pmsf (ii)
pdb|3H19|A Chain A, Crystal Structure Of Este5, Was Soaked By Methyl Alcohol
pdb|3H1A|A Chain A, Crystal Structure Of Este5, Was Soaked By Ethyl Alcohol
pdb|3H1B|A Chain A, Crystal Structure Of Este5, Was Soaked By Isopropyl
Alcohol
pdb|3L1H|A Chain A, Crystal Structure Of Este5, Was Soaked By Fecl3
pdb|3L1I|A Chain A, Crystal Structure Of Este5, Was Soaked By Cuso4
pdb|3L1J|A Chain A, Crystal Structure Of Este5, Was Soaked By Znso4
Length = 322
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 18/125 (14%)
Query: 54 DVLSKDVPVNQSKHTWVRIFVPCQALDPSSTAQLPLIVHFHGGGFVVLSAATSLFHDFCS 113
D+ + V V WVR CQA I++ HGGG+V+ S T
Sbjct: 56 DIQVEQVTVAGCAAEWVRA-PGCQAGK--------AILYLHGGGYVMGSINT--HRSMVG 104
Query: 114 NIAAKVPAVVASVEYRLAPEHRLPAAYDDAMEVLHWIKKTQEDWLHKYVDLSRCFLMGDS 173
I+ A ++YRLAPEH PAA +D + W+ L + + GDS
Sbjct: 105 EISRASQAAALLLDYRLAPEHPFPAAVEDGVAAYRWL-------LDQGFKPQHLSISGDS 157
Query: 174 SGGNI 178
+GG +
Sbjct: 158 AGGGL 162
>pdb|3V9A|A Chain A, Crystal Structure Of EsteraseLIPASE FROM UNCULTURED
BACTERIUM
Length = 309
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 18/125 (14%)
Query: 54 DVLSKDVPVNQSKHTWVRIFVPCQALDPSSTAQLPLIVHFHGGGFVVLSAATSLFHDFCS 113
D+ + V V WVR CQA I++ HGGG+V+ S T
Sbjct: 43 DIQVEQVTVAGCAAEWVRA-PGCQAGK--------AILYLHGGGYVMGSINT--HRSMVG 91
Query: 114 NIAAKVPAVVASVEYRLAPEHRLPAAYDDAMEVLHWIKKTQEDWLHKYVDLSRCFLMGDS 173
I+ A ++YRLAPEH PAA +D + W+ L + + GDS
Sbjct: 92 EISRASQAAALLLDYRLAPEHPFPAAVEDGVAAYRWL-------LDQGFKPQHLSISGDS 144
Query: 174 SGGNI 178
+GG +
Sbjct: 145 AGGGL 149
>pdb|1C7I|A Chain A, Thermophylic Pnb Esterase
Length = 489
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 20/149 (13%)
Query: 38 STVATPNIPDEHHHTLDVLSKDVPVNQSKHTWVRIFVPCQALDPSSTAQLPLIVHFHGGG 97
+TV P P + L + K++P +V +F P + + LP++V HGG
Sbjct: 54 ATVYGPVCP-QPSDLLSLSYKELPRQSEDCLYVNVFAPD-----TPSQNLPVMVWIHGGA 107
Query: 98 FVVLSAATSLFHDFCSNIAAKVPAVVASVEYRLAP-----EHRLPAAYDDAMEVLHWIKK 152
F + + + L+ S +AA+ +V ++ YRL P AY D + +L +
Sbjct: 108 FYLGAGSEPLYD--GSKLAAQGEVIVVTLNYRLGPFGFMHLSSFDEAYSDNLGLLD--QA 163
Query: 153 TQEDWLHKYV-----DLSRCFLMGDSSGG 176
W+ + + D + G+S+GG
Sbjct: 164 AALKWVRENISAFGGDPDNVTVFGESAGG 192
>pdb|3GA7|A Chain A, 1.55 Angstrom Crystal Structure Of An Acetyl Esterase From
Salmonella Typhimurium
Length = 326
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 74 VPCQALDPSSTAQLPLIVHFHGGGFVVLSAATSLFHDFCSNIAAKVPA-VVASVEYRLAP 132
V + P T+Q L + HGGGF++ + T HD + A+ V ++Y L+P
Sbjct: 75 VTTRLYSPQPTSQATL-YYLHGGGFILGNLDT---HDRIXRLLARYTGCTVIGIDYSLSP 130
Query: 133 EHRLPAAYDDAMEVLHWIKKTQEDW 157
+ R P A ++ + V + + +++
Sbjct: 131 QARYPQAIEETVAVCSYFSQHADEY 155
>pdb|1THG|A Chain A, 1.8 Angstroms Refined Structure Of The Lipase From
Geotrichum Candidum
Length = 544
Score = 36.6 bits (83), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 18/143 (12%)
Query: 45 IPDEHHHTLDVLSKDVPVNQSKHTWVRIFVPCQALDPSSTAQLPLIVHFHGGGFVVLSAA 104
IP+E L ++K ++ +F P A+LP++V +GG FV S+A
Sbjct: 83 IPEEFRGPLYDMAKGTVSMNEDCLYLNVFRPAGT---KPDAKLPVMVWIYGGAFVYGSSA 139
Query: 105 TSLFHDFC-SNIAAKVPAVVASVEYRLAP-----------EHRLPAAYDDAMEVLHWIKK 152
+ + +I P V S+ YR P E A D + L W+
Sbjct: 140 AYPGNSYVKESINMGQPVVFVSINYRTGPFGFLGGDAITAEGNTNAGLHDQRKGLEWVSD 199
Query: 153 TQEDWLHKYVDLSRCFLMGDSSG 175
++ D + + G+S+G
Sbjct: 200 NIANFGG---DPDKVMIFGESAG 219
>pdb|1K4Y|A Chain A, Crystal Structure Of Rabbit Liver Carboxylesterase In
Complex With 4- Piperidino-Piperidine
Length = 534
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 77/164 (46%), Gaps = 27/164 (16%)
Query: 31 RNWTNFPSTVATPNIPDE---HHHTLDVL----SKDVPVNQSKHT-WVRIFVPCQALDPS 82
+W++ +T + P + + H L L +++P+ S+ ++ I+ P D +
Sbjct: 50 ESWSHVKNTTSYPPMCSQDAVSGHMLSELFTNRKENIPLKFSEDCLYLNIYTPA---DLT 106
Query: 83 STAQLPLIVHFHGGGFVVLSAATSLFHDFCSNIAAKVPAVVASVEYRL--------APEH 134
+LP++V HGGG +V A+T +D + ++A VV +++YRL EH
Sbjct: 107 KRGRLPVMVWIHGGGLMVGGAST---YDGLA-LSAHENVVVVTIQYRLGIWGFFSTGDEH 162
Query: 135 -RLPAAYDDAMEVLHWIKKTQEDWLHKYVDLSRCFLMGDSSGGN 177
R + D + L W+ Q++ + D + G+S+GG
Sbjct: 163 SRGNWGHLDQVAALRWV---QDNIANFGGDPGSVTIFGESAGGQ 203
>pdb|1QE3|A Chain A, Pnb Esterase
Length = 489
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 19/134 (14%)
Query: 53 LDVLSKDVPVNQSKHTWVRIFVPCQALDPSSTAQLPLIVHFHGGGFVVLSAATSLFHDFC 112
L + ++P +V +F P + + LP++V HGG F + + + L+
Sbjct: 68 LSLSYTELPRQSEDCLYVNVFAPD-----TPSQNLPVMVWIHGGAFYLGAGSEPLYD--G 120
Query: 113 SNIAAKVPAVVASVEYRLAPEHRL-----PAAYDDAMEVLHWIKKTQEDWLHKYV----- 162
S +AA+ +V ++ YRL P L AY D + +L + W+ + +
Sbjct: 121 SKLAAQGEVIVVTLNYRLGPFGFLHLSSFDEAYSDNLGLLD--QAAALKWVRENISAFGG 178
Query: 163 DLSRCFLMGDSSGG 176
D + G+S+GG
Sbjct: 179 DPDNVTVFGESAGG 192
>pdb|1C7J|A Chain A, Pnb Esterase 56c8
Length = 489
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 58/134 (43%), Gaps = 19/134 (14%)
Query: 53 LDVLSKDVPVNQSKHTWVRIFVPCQALDPSSTAQLPLIVHFHGGGFVVLSAATSLFHDFC 112
L + ++P +V +F P + + LP++V HGG F + + + L+
Sbjct: 68 LSLSYTELPRQSEDCLYVNVFAPD-----TPSQNLPVMVWIHGGAFYLGAGSEPLYD--G 120
Query: 113 SNIAAKVPAVVASVEYRLAP-----EHRLPAAYDDAMEVLHWIKKTQEDWLHKYV----- 162
S +AA+ +V ++ YRL P AY D + +L + W+ + +
Sbjct: 121 SKLAAQGEVIVVTLNYRLGPFGFMHLSSFDEAYSDNLGLLD--QAAALKWVRENISAFGG 178
Query: 163 DLSRCFLMGDSSGG 176
D + G+S+GG
Sbjct: 179 DPDNVTVFGESAGG 192
>pdb|3K9B|A Chain A, Crystal Structure Of Human Liver Carboxylesterase 1 (Hce1)
In Covalent Complex With The Nerve Agent Cyclosarin (Gf)
pdb|3K9B|B Chain B, Crystal Structure Of Human Liver Carboxylesterase 1 (Hce1)
In Covalent Complex With The Nerve Agent Cyclosarin (Gf)
pdb|3K9B|C Chain C, Crystal Structure Of Human Liver Carboxylesterase 1 (Hce1)
In Covalent Complex With The Nerve Agent Cyclosarin (Gf)
Length = 529
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
Query: 58 KDVPVNQSKHT-WVRIFVPCQALDPSSTAQLPLIVHFHGGGFVVLSAATSLFHDFCSNIA 116
+++P+ S+ ++ I+ P D + +LP++V HGGG +V +A+T +D + +A
Sbjct: 83 ENIPLKLSEDCLYLNIYTPA---DLTKKNRLPVMVWIHGGGLMVGAAST---YDGLA-LA 135
Query: 117 AKVPAVVASVEYRLA 131
A VV +++YRL
Sbjct: 136 AHENVVVVTIQYRLG 150
>pdb|1YA4|A Chain A, Crystal Structure Of Human Liver Carboxylesterase 1 In
Complex With Tamoxifen
pdb|1YA4|B Chain B, Crystal Structure Of Human Liver Carboxylesterase 1 In
Complex With Tamoxifen
pdb|1YA4|C Chain C, Crystal Structure Of Human Liver Carboxylesterase 1 In
Complex With Tamoxifen
pdb|1YA8|A Chain A, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Cleavage Products Of Mevastatin
pdb|1YA8|B Chain B, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Cleavage Products Of Mevastatin
pdb|1YA8|C Chain C, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Cleavage Products Of Mevastatin
pdb|1YAH|A Chain A, Crystal Structure Of Human Liver Carboxylesterase
Complexed To Etyl Acetate; A Fatty Acid Ethyl Ester
Analogue
pdb|1YAH|B Chain B, Crystal Structure Of Human Liver Carboxylesterase
Complexed To Etyl Acetate; A Fatty Acid Ethyl Ester
Analogue
pdb|1YAH|C Chain C, Crystal Structure Of Human Liver Carboxylesterase
Complexed To Etyl Acetate; A Fatty Acid Ethyl Ester
Analogue
pdb|1YAJ|A Chain A, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Benzil
pdb|1YAJ|B Chain B, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Benzil
pdb|1YAJ|C Chain C, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Benzil
pdb|1YAJ|D Chain D, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Benzil
pdb|1YAJ|E Chain E, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Benzil
pdb|1YAJ|F Chain F, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Benzil
pdb|1YAJ|G Chain G, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Benzil
pdb|1YAJ|H Chain H, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Benzil
pdb|1YAJ|I Chain I, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Benzil
pdb|1YAJ|J Chain J, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Benzil
pdb|1YAJ|K Chain K, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Benzil
pdb|1YAJ|L Chain L, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Benzil
pdb|2HRQ|A Chain A, Crystal Structure Of Human Liver Carboxylesterase 1 (hce1)
In Covalent Complex With The Nerve Agent Soman (gd)
pdb|2HRQ|B Chain B, Crystal Structure Of Human Liver Carboxylesterase 1 (hce1)
In Covalent Complex With The Nerve Agent Soman (gd)
pdb|2HRQ|C Chain C, Crystal Structure Of Human Liver Carboxylesterase 1 (hce1)
In Covalent Complex With The Nerve Agent Soman (gd)
pdb|2HRQ|D Chain D, Crystal Structure Of Human Liver Carboxylesterase 1 (hce1)
In Covalent Complex With The Nerve Agent Soman (gd)
pdb|2HRQ|E Chain E, Crystal Structure Of Human Liver Carboxylesterase 1 (hce1)
In Covalent Complex With The Nerve Agent Soman (gd)
pdb|2HRQ|F Chain F, Crystal Structure Of Human Liver Carboxylesterase 1 (hce1)
In Covalent Complex With The Nerve Agent Soman (gd)
pdb|2HRR|A Chain A, Crystal Structure Of Human Liver Carboxylesterase 1 (Hce1)
In Covalent Complex With The Nerve Agent Tabun (Ga)
pdb|2HRR|B Chain B, Crystal Structure Of Human Liver Carboxylesterase 1 (Hce1)
In Covalent Complex With The Nerve Agent Tabun (Ga)
pdb|2HRR|C Chain C, Crystal Structure Of Human Liver Carboxylesterase 1 (Hce1)
In Covalent Complex With The Nerve Agent Tabun (Ga)
pdb|4AB1|A Chain A, Recombinant Human Carboxylesterase 1 From Whole Cabbage
Loopers
Length = 532
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
Query: 58 KDVPVNQSKHT-WVRIFVPCQALDPSSTAQLPLIVHFHGGGFVVLSAATSLFHDFCSNIA 116
+++P+ S+ ++ I+ P D + +LP++V HGGG +V +A+T +D + +A
Sbjct: 86 ENIPLKLSEDCLYLNIYTPA---DLTKKNRLPVMVWIHGGGLMVGAAST---YDGLA-LA 138
Query: 117 AKVPAVVASVEYRLA 131
A VV +++YRL
Sbjct: 139 AHENVVVVTIQYRLG 153
>pdb|1MX1|A Chain A, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Tacrine
pdb|1MX1|B Chain B, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Tacrine
pdb|1MX1|C Chain C, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Tacrine
pdb|1MX1|D Chain D, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Tacrine
pdb|1MX1|E Chain E, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Tacrine
pdb|1MX1|F Chain F, Crystal Structure Of Human Liver Carboxylesterase In
Complex With Tacrine
pdb|1MX5|A Chain A, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Homatropine, A Cocaine Analogue
pdb|1MX5|B Chain B, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Homatropine, A Cocaine Analogue
pdb|1MX5|C Chain C, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Homatropine, A Cocaine Analogue
pdb|1MX5|D Chain D, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Homatropine, A Cocaine Analogue
pdb|1MX5|E Chain E, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Homatropine, A Cocaine Analogue
pdb|1MX5|F Chain F, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Homatropine, A Cocaine Analogue
pdb|1MX9|A Chain A, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Naloxone Methiodide, A Heroin Analogue
pdb|1MX9|B Chain B, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Naloxone Methiodide, A Heroin Analogue
pdb|1MX9|C Chain C, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Naloxone Methiodide, A Heroin Analogue
pdb|1MX9|D Chain D, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Naloxone Methiodide, A Heroin Analogue
pdb|1MX9|E Chain E, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Naloxone Methiodide, A Heroin Analogue
pdb|1MX9|F Chain F, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Naloxone Methiodide, A Heroin Analogue
pdb|1MX9|G Chain G, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Naloxone Methiodide, A Heroin Analogue
pdb|1MX9|H Chain H, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Naloxone Methiodide, A Heroin Analogue
pdb|1MX9|I Chain I, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Naloxone Methiodide, A Heroin Analogue
pdb|1MX9|J Chain J, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Naloxone Methiodide, A Heroin Analogue
pdb|1MX9|K Chain K, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Naloxone Methiodide, A Heroin Analogue
pdb|1MX9|L Chain L, Crystal Structure Of Human Liver Carboxylesterase In
Complexed With Naloxone Methiodide, A Heroin Analogue
Length = 548
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
Query: 58 KDVPVNQSKHT-WVRIFVPCQALDPSSTAQLPLIVHFHGGGFVVLSAATSLFHDFCSNIA 116
+++P+ S+ ++ I+ P D + +LP++V HGGG +V +A+T +D + +A
Sbjct: 88 ENIPLKLSEDCLYLNIYTPA---DLTKKNRLPVMVWIHGGGLMVGAAST---YDGLA-LA 140
Query: 117 AKVPAVVASVEYRLA 131
A VV +++YRL
Sbjct: 141 AHENVVVVTIQYRLG 155
>pdb|2DQY|A Chain A, Crystal Structure Of Human Carboxylesterase In Complex
With Cholate And Palmitate
pdb|2DQY|B Chain B, Crystal Structure Of Human Carboxylesterase In Complex
With Cholate And Palmitate
pdb|2DQY|C Chain C, Crystal Structure Of Human Carboxylesterase In Complex
With Cholate And Palmitate
pdb|2DQZ|A Chain A, Crystal Structure Of Human Carboxylesterase In Complex
With Homatropine, Coenzyme A, And Palmitate
pdb|2DQZ|B Chain B, Crystal Structure Of Human Carboxylesterase In Complex
With Homatropine, Coenzyme A, And Palmitate
pdb|2DQZ|C Chain C, Crystal Structure Of Human Carboxylesterase In Complex
With Homatropine, Coenzyme A, And Palmitate
pdb|2DR0|A Chain A, Crystal Structure Of Human Carboxylesterase In Complex
With Taurocholate
pdb|2DR0|B Chain B, Crystal Structure Of Human Carboxylesterase In Complex
With Taurocholate
pdb|2DR0|C Chain C, Crystal Structure Of Human Carboxylesterase In Complex
With Taurocholate
pdb|2H7C|A Chain A, Crystal Structure Of Human Carboxylesterase In Complex
With Coenzyme A
pdb|2H7C|B Chain B, Crystal Structure Of Human Carboxylesterase In Complex
With Coenzyme A
pdb|2H7C|C Chain C, Crystal Structure Of Human Carboxylesterase In Complex
With Coenzyme A
pdb|2H7C|D Chain D, Crystal Structure Of Human Carboxylesterase In Complex
With Coenzyme A
pdb|2H7C|E Chain E, Crystal Structure Of Human Carboxylesterase In Complex
With Coenzyme A
pdb|2H7C|F Chain F, Crystal Structure Of Human Carboxylesterase In Complex
With Coenzyme A
Length = 542
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
Query: 58 KDVPVNQSKHT-WVRIFVPCQALDPSSTAQLPLIVHFHGGGFVVLSAATSLFHDFCSNIA 116
+++P+ S+ ++ I+ P D + +LP++V HGGG +V +A+T +D + +A
Sbjct: 88 ENIPLKLSEDCLYLNIYTPA---DLTKKNRLPVMVWIHGGGLMVGAAST---YDGLA-LA 140
Query: 117 AKVPAVVASVEYRLA 131
A VV +++YRL
Sbjct: 141 AHENVVVVTIQYRLG 155
>pdb|4E11|A Chain A, Crystal Structure Of Kynurenine Formamidase From
Drosophila Melanogaster
Length = 303
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 92/244 (37%), Gaps = 40/244 (16%)
Query: 83 STAQLPLIVHFHGGGFVVLSAATSLFHDFCSNIAAKVP--AVVASVEYRLAPEHRLPAAY 140
+T Q PL V HGG + + + S CS + V VA ++Y L P+ L
Sbjct: 78 TTNQAPLFVFVHGGYWQEMDMSMS-----CSIVGPLVRRGYRVAVMDYNLCPQVTLEQLM 132
Query: 141 DDAMEVLHWIKKTQEDWLHKYVDLSRCFLMGDSSGGNIAYHAGLRASAQVDDLLPLKIRG 200
L+WI E +S G S+G ++ +R +++ +
Sbjct: 133 TQFTHFLNWIFDYTE-----MTKVSSLTFAGHSAGAHLLAQILMRP-----NVITAQRSK 182
Query: 201 LILNYPFFGGVK--RTESELRLVNDPFLPLCVNDLMWELALPIGVDRDNEYCNPTVGGGS 258
++ F GV R S L VN P L +N+ E P+ EY + TV +
Sbjct: 183 MVWALIFLCGVYDLRELSNLESVN-PKNILGLNERNIESVSPMLW----EYTDVTVWNST 237
Query: 259 KLLDHIRMLGWNVMVSGSSEDPLIDRQIEFVKMMERKGVKVICHLDQGGKH-------GF 311
K+ V+ + I++ + ++ +KG K L +G H
Sbjct: 238 KIY---------VVAAEHDSTTFIEQSRHYADVLRKKGYKASFTLFKGYDHFDIIEETAI 288
Query: 312 DDSD 315
DDSD
Sbjct: 289 DDSD 292
>pdb|2FJ0|A Chain A, Crystal Structure Of Juvenile Hormone Esterase From
Manduca Sexta, With Otfp Covalently Attached
Length = 551
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 15/124 (12%)
Query: 74 VPCQALDPSSTAQLPLIVHFHGGGFVVLSAATSLFHDFCSNIAAKVPAVVASVEYRLAPE 133
+P A D + A LP++V HGGGF S + L H ++ V +V + YRL
Sbjct: 102 LPRDAADKNRFAGLPVLVFIHGGGFAFGSGDSDL-HGPEYLVSKDV--IVITFNYRLNVY 158
Query: 134 HRLP---------AAYDDAMEVLHWIKKTQEDWLHKYVDLSRCFLMGDSSGGNIAYHAGL 184
L A D + +L W+++ + + D++ LMG S+G + L
Sbjct: 159 GFLSLNSTSVPGNAGLRDMVTLLKWVQRNAHFFGGRPDDVT---LMGQSAGAAATHILSL 215
Query: 185 RASA 188
+A
Sbjct: 216 SKAA 219
>pdb|1DX4|A Chain A, Ache From Drosophila Melanogaster Complex With Tacrine
Derivative
9-(3-Phenylmethylamino)-1,2,3,4-Tetrahydroacridine
pdb|1QO9|A Chain A, Native Acetylcholinesterase From Drosophila Melanogaster
pdb|1QON|A Chain A, Ache From Drosophila Melanogaster Complex With Tacrine
Derivative
9-(3-Iodobenzylamino)-1,2,3,4-Tetrahydroacridine
Length = 585
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 82 SSTAQLPLIVHFHGGGFVVLSAATSLFHDFCSNIAAKVPAVVASVEYR--------LAPE 133
++T LP+++ +GGGF+ SA +++ +AA +VAS +YR LAPE
Sbjct: 136 NTTNGLPILIWIYGGGFMTGSATLDIYN--ADIMAAVGNVIVASFQYRVGAFGFLHLAPE 193
Query: 134 HRLPAAYDDAMEVLHWIKKTQEDWL 158
A + V W + WL
Sbjct: 194 MPSEFAEEAPGNVGLWDQALAIRWL 218
>pdb|4E14|A Chain A, Crystal Structure Of Kynurenine Formamidase Conjugated
With Phenylmethylsulfonyl Fluoride
pdb|4E15|A Chain A, Crystal Structure Of Kynurenine Formamidase Conjugated
With An Inhibitor
pdb|4E15|B Chain B, Crystal Structure Of Kynurenine Formamidase Conjugated
With An Inhibitor
Length = 303
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 91/244 (37%), Gaps = 40/244 (16%)
Query: 83 STAQLPLIVHFHGGGFVVLSAATSLFHDFCSNIAAKVP--AVVASVEYRLAPEHRLPAAY 140
+T Q PL V HGG + + + S CS + V VA ++Y L P+ L
Sbjct: 78 TTNQAPLFVFVHGGYWQEMDMSMS-----CSIVGPLVRRGYRVAVMDYNLCPQVTLEQLM 132
Query: 141 DDAMEVLHWIKKTQEDWLHKYVDLSRCFLMGDSSGGNIAYHAGLRASAQVDDLLPLKIRG 200
L+WI E +S G +G ++ +R +++ +
Sbjct: 133 TQFTHFLNWIFDYTE-----MTKVSSLTFAGHXAGAHLLAQILMRP-----NVITAQRSK 182
Query: 201 LILNYPFFGGVK--RTESELRLVNDPFLPLCVNDLMWELALPIGVDRDNEYCNPTVGGGS 258
++ F GV R S L VN P L +N+ E P+ EY + TV +
Sbjct: 183 MVWALIFLCGVYDLRELSNLESVN-PKNILGLNERNIESVSPMLW----EYTDVTVWNST 237
Query: 259 KLLDHIRMLGWNVMVSGSSEDPLIDRQIEFVKMMERKGVKVICHLDQGGKH-------GF 311
K+ V+ + I++ + ++ +KG K L +G H
Sbjct: 238 KIY---------VVAAEHDSTTFIEQSRHYADVLRKKGYKASFTLFKGYDHFDIIEETAI 288
Query: 312 DDSD 315
DDSD
Sbjct: 289 DDSD 292
>pdb|3BIW|A Chain A, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|B Chain B, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|C Chain C, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|D Chain D, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIX|A Chain A, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
pdb|3BIX|B Chain B, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
pdb|3BIX|C Chain C, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
pdb|3BIX|D Chain D, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
Length = 574
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 45 IPDEHHHTLDVLSKDVPVNQSKHTWVRIFVPCQALDPSSTAQLPLIVHFHGGGFVVLSAA 104
+P + LDV+S V ++ I+VP + S P++V+ HGG ++
Sbjct: 89 LPVWFTNNLDVVSSYVQDQSEDCLYLNIYVPTEDDIRDSGGPKPVMVYIHGGSYM---EG 145
Query: 105 TSLFHDFCSNIAAKVPAVVASVEYRLA 131
T +D S +A+ +V +V YRL
Sbjct: 146 TGNLYD-GSVLASYGNVIVITVNYRLG 171
>pdb|3B3Q|A Chain A, Crystal Structure Of A Synaptic Adhesion Complex
pdb|3B3Q|B Chain B, Crystal Structure Of A Synaptic Adhesion Complex
Length = 577
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 19/160 (11%)
Query: 45 IPDEHHHTLDVLSKDVPVNQSKHTWVRIFVPCQALDPSSTAQLPLIVHFHGGGFVVLSAA 104
+P + LDV+S V ++ I+VP + S P++V+ HGG ++
Sbjct: 102 LPVWFTNNLDVVSSYVQDQSEDCLYLNIYVPTEDDIRDSGGPKPVMVYIHGGSYM---EG 158
Query: 105 TSLFHDFCSNIAAKVPAVVASVEYRLAPEHRLPAAYDDA------MEVLHWIKKTQEDWL 158
T +D S +A+ +V +V YRL L A ++++ ++ T E+
Sbjct: 159 TGNLYD-GSVLASYGNVIVITVNYRLGVLGFLSTGDQAAKGNYGLLDLIQALRWTSENIG 217
Query: 159 HKYVDLSRCFLMGDSSGGNIA-------YHAGL--RASAQ 189
D R + G +GG+ Y GL RA AQ
Sbjct: 218 FFGGDPLRITVFGSGAGGSCVNLLTLSHYSEGLFQRAIAQ 257
>pdb|3C5V|A Chain A, Pp2a-Specific Methylesterase Apo Form (Pme)
Length = 316
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 10/115 (8%)
Query: 83 STAQLPLIVHFHGGGFVVLSAATSLFHDFCSNIAAKVPAVVASVEYRLAPEHRLPAAYDD 142
S ++ P+++ HGGG LS A F + I ++V + +++ R E ++ D
Sbjct: 34 SGSEGPVLLLLHGGGHSALSWAV-----FTAAIISRVQCRIVALDLRSHGETKVKNPEDL 88
Query: 143 AMEVLHWIKKTQEDWLHKYVDL-SRCFLMGDSSGGNIAYHAGLRASAQVDDLLPL 196
+ E + K Y DL L+G S GG IA H +S V LL L
Sbjct: 89 SAETM--AKDVGNVVEAMYGDLPPPIMLIGHSMGGAIAVHTA--SSNLVPSLLGL 139
>pdb|2FTC|N Chain N, Structural Model For The Large Subunit Of The Mammalian
Mitochondrial Ribosome
pdb|3IY9|N Chain N, Leishmania Tarentolae Mitochondrial Large Ribosomal
Subunit Model
Length = 96
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 254 VGGGSKLLDHIRMLGWNVMVSGS---SEDPLIDRQIEFVKMMERKGVKVICHLDQGGK 308
VGG L H R +G + G+ SE PL+ RQ++ V M+RK ++ + G+
Sbjct: 30 VGG---LNTHYRYIGKTMDYRGTMIPSEAPLLHRQVKLVDPMDRKPTEIEWRFTEAGE 84
>pdb|3EDC|A Chain A, Crystal Structure Of A 1.6-Hexanediol Bound Tetrameric
Form Of Escherichia Coli Lac-Repressor Refined To 2.1
Resolution
pdb|3EDC|B Chain B, Crystal Structure Of A 1.6-Hexanediol Bound Tetrameric
Form Of Escherichia Coli Lac-Repressor Refined To 2.1
Resolution
pdb|3EDC|C Chain C, Crystal Structure Of A 1.6-Hexanediol Bound Tetrameric
Form Of Escherichia Coli Lac-Repressor Refined To 2.1
Resolution
pdb|3EDC|D Chain D, Crystal Structure Of A 1.6-Hexanediol Bound Tetrameric
Form Of Escherichia Coli Lac-Repressor Refined To 2.1
Resolution
Length = 360
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 165 SRCFLMGDSSGGNIAYHAGLRA-SAQVDDLLPLKIRGLILNYPF 207
SR +G S ++ +G+ A A V +LL ++ GLI+NYP
Sbjct: 85 SRADQLGASVVVSMVERSGVEACKAAVHNLLAQRVSGLIINYPL 128
>pdb|2PE5|A Chain A, Crystal Structure Of The Lac Repressor Bound To Onpg In
Repressed State
pdb|2PE5|B Chain B, Crystal Structure Of The Lac Repressor Bound To Onpg In
Repressed State
pdb|2PE5|C Chain C, Crystal Structure Of The Lac Repressor Bound To Onpg In
Repressed State
Length = 330
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 165 SRCFLMGDSSGGNIAYHAGLRA-SAQVDDLLPLKIRGLILNYPF 207
SR +G S ++ +G+ A A V +LL ++ GLI+NYP
Sbjct: 84 SRADQLGASVVVSMVERSGVEACKAAVHNLLAQRVSGLIINYPL 127
>pdb|1JYE|A Chain A, Structure Of A Dimeric Lac Repressor With C-Terminal
Deletion And K84l Substitution
Length = 349
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 164 LSRCFLMGDSSGGNIAYHAGLRA-SAQVDDLLPLKIRGLILNYPF 207
LSR +G S ++ +G+ A V +LL ++ GLI+NYP
Sbjct: 84 LSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINYPL 128
>pdb|1TLF|A Chain A, Unprecedented Quaternary Structure Of E. Coli Lac
Repressor Core Tetramer: Implications For Dna Looping
pdb|1TLF|B Chain B, Unprecedented Quaternary Structure Of E. Coli Lac
Repressor Core Tetramer: Implications For Dna Looping
pdb|1TLF|C Chain C, Unprecedented Quaternary Structure Of E. Coli Lac
Repressor Core Tetramer: Implications For Dna Looping
pdb|1TLF|D Chain D, Unprecedented Quaternary Structure Of E. Coli Lac
Repressor Core Tetramer: Implications For Dna Looping
Length = 301
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 165 SRCFLMGDSSGGNIAYHAGLRA-SAQVDDLLPLKIRGLILNYPF 207
SR +G S ++ +G+ A A V +LL ++ GLI+NYP
Sbjct: 26 SRADQLGASVVVSMVERSGVEACKAAVHNLLAQRVSGLIINYPL 69
>pdb|2P9H|A Chain A, High Resolution Structure Of The Lactose Repressor Bound
To Iptg
pdb|2P9H|B Chain B, High Resolution Structure Of The Lactose Repressor Bound
To Iptg
pdb|2PAF|A Chain A, Crystal Structure Of The Lactose Repressor Bound To Anti-
Inducer Onpf In Induced State
pdb|2PAF|B Chain B, Crystal Structure Of The Lactose Repressor Bound To Anti-
Inducer Onpf In Induced State
Length = 269
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 165 SRCFLMGDSSGGNIAYHAGLRA-SAQVDDLLPLKIRGLILNYPF 207
SR +G S ++ +G+ A A V +LL ++ GLI+NYP
Sbjct: 24 SRADQLGASVVVSMVERSGVEACKAAVHNLLAQRVSGLIINYPL 67
>pdb|3NWO|A Chain A, Crystal Structure Of Proline Iminopeptidase Mycobacterium
Smegmatis
Length = 330
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 14/77 (18%)
Query: 41 ATPNIPDEHHHTLDVLSKDVPVNQSKHTWVRIFVPCQALDPSSTAQLPLIVHFHGGGFVV 100
A N P + V S+ VP + TWV++ P A P + LPLIV HGG
Sbjct: 14 ANTNGPGSMLSRMPVSSRTVPFGDHE-TWVQVTTPENA-QPHA---LPLIV-LHGG---- 63
Query: 101 LSAATSLFHDFCSNIAA 117
+ H++ +NIAA
Sbjct: 64 ----PGMAHNYVANIAA 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,109,155
Number of Sequences: 62578
Number of extensions: 466921
Number of successful extensions: 1046
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 976
Number of HSP's gapped (non-prelim): 52
length of query: 345
length of database: 14,973,337
effective HSP length: 100
effective length of query: 245
effective length of database: 8,715,537
effective search space: 2135306565
effective search space used: 2135306565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)