Query 019165
Match_columns 345
No_of_seqs 362 out of 2055
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 07:13:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019165.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019165hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10671 copA copper exporting 99.3 2.9E-11 6.4E-16 130.8 14.8 158 61-224 3-163 (834)
2 KOG0207 Cation transport ATPas 99.3 5.5E-11 1.2E-15 125.1 13.4 141 61-227 69-216 (951)
3 PF00403 HMA: Heavy-metal-asso 99.2 1.1E-10 2.5E-15 85.6 7.3 58 163-221 1-62 (62)
4 KOG0207 Cation transport ATPas 99.2 1.5E-10 3.3E-15 121.9 10.9 134 69-229 3-141 (951)
5 PF00403 HMA: Heavy-metal-asso 99.0 1.6E-09 3.5E-14 79.4 6.2 59 64-123 1-62 (62)
6 COG2608 CopZ Copper chaperone 98.9 4.9E-09 1.1E-13 79.6 7.7 64 161-225 3-70 (71)
7 KOG1603 Copper chaperone [Inor 98.8 1.8E-08 3.9E-13 76.8 8.8 67 159-226 4-71 (73)
8 COG2608 CopZ Copper chaperone 98.8 1.2E-08 2.6E-13 77.4 6.8 65 60-125 1-68 (71)
9 KOG1603 Copper chaperone [Inor 98.6 1.4E-07 3.1E-12 71.8 6.8 66 59-125 3-68 (73)
10 KOG4656 Copper chaperone for s 98.4 6.3E-07 1.4E-11 80.1 7.4 71 159-230 6-76 (247)
11 KOG4656 Copper chaperone for s 98.3 1.6E-06 3.4E-11 77.6 6.8 70 59-130 5-74 (247)
12 PLN02957 copper, zinc superoxi 97.8 9.3E-05 2E-09 69.0 9.1 70 160-230 6-75 (238)
13 PRK10671 copA copper exporting 97.6 0.00011 2.4E-09 80.0 7.0 64 160-226 3-67 (834)
14 COG2217 ZntA Cation transport 97.5 0.0002 4.3E-09 76.3 6.7 62 161-224 3-69 (713)
15 PLN02957 copper, zinc superoxi 97.2 0.0011 2.3E-08 61.9 7.6 67 61-129 6-72 (238)
16 TIGR00003 copper ion binding p 97.2 0.0022 4.8E-08 44.0 7.4 61 161-222 3-67 (68)
17 COG2217 ZntA Cation transport 97.0 0.0013 2.9E-08 70.1 6.3 63 61-125 2-68 (713)
18 TIGR00003 copper ion binding p 96.5 0.018 3.9E-07 39.3 7.3 62 61-123 2-66 (68)
19 PRK11033 zntA zinc/cadmium/mer 95.0 0.053 1.1E-06 58.6 6.9 64 159-223 52-117 (741)
20 PRK11033 zntA zinc/cadmium/mer 93.5 0.17 3.8E-06 54.7 7.1 66 59-125 51-117 (741)
21 TIGR02052 MerP mercuric transp 87.7 4.4 9.5E-05 30.0 8.1 62 161-223 24-89 (92)
22 cd00371 HMA Heavy-metal-associ 79.8 11 0.00023 22.7 6.7 38 165-202 3-41 (63)
23 PRK13748 putative mercuric red 73.8 11 0.00024 39.0 7.6 64 163-227 3-69 (561)
24 TIGR02052 MerP mercuric transp 66.2 19 0.0004 26.5 5.6 42 62-103 24-66 (92)
25 PF01206 TusA: Sulfurtransfera 61.4 25 0.00054 25.7 5.3 53 163-225 2-57 (70)
26 COG1888 Uncharacterized protei 60.8 29 0.00063 27.6 5.6 67 59-126 4-78 (97)
27 COG1888 Uncharacterized protei 58.0 83 0.0018 25.1 7.7 68 159-227 5-81 (97)
28 cd00371 HMA Heavy-metal-associ 57.4 31 0.00067 20.4 4.7 37 67-103 4-41 (63)
29 PF02680 DUF211: Uncharacteriz 50.4 1.2E+02 0.0026 24.3 7.7 67 159-227 4-79 (95)
30 PRK13748 putative mercuric red 47.8 55 0.0012 33.9 7.1 61 64-125 3-65 (561)
31 COG2177 FtsX Cell division pro 47.0 1.4E+02 0.003 28.9 9.1 90 63-194 63-153 (297)
32 PF02680 DUF211: Uncharacteriz 46.6 52 0.0011 26.3 5.1 64 60-125 4-75 (95)
33 PF01883 DUF59: Domain of unkn 45.6 31 0.00067 25.4 3.6 33 61-93 34-72 (72)
34 PF01883 DUF59: Domain of unkn 43.4 36 0.00077 25.0 3.6 32 161-192 35-72 (72)
35 PRK11018 hypothetical protein; 37.9 1.5E+02 0.0032 22.4 6.4 55 161-225 8-65 (78)
36 cd03421 SirA_like_N SirA_like_ 35.9 1.1E+02 0.0025 22.0 5.3 51 164-225 2-55 (67)
37 PRK14054 methionine sulfoxide 32.1 85 0.0019 27.8 4.7 27 172-198 11-37 (172)
38 PRK11152 ilvM acetolactate syn 28.1 2.4E+02 0.0052 21.4 6.0 59 109-192 17-75 (76)
39 PF14437 MafB19-deam: MafB19-l 27.1 1.1E+02 0.0023 26.5 4.3 41 60-101 99-141 (146)
40 PRK00058 methionine sulfoxide 26.8 1.5E+02 0.0032 27.4 5.4 34 60-98 45-78 (213)
41 PRK14054 methionine sulfoxide 26.6 1.4E+02 0.0031 26.5 5.2 28 72-99 10-37 (172)
42 PF14437 MafB19-deam: MafB19-l 23.7 1.4E+02 0.0029 25.9 4.3 40 160-200 100-141 (146)
43 COG0841 AcrB Cation/multidrug 23.1 7.3E+02 0.016 28.3 11.1 123 73-215 61-207 (1009)
44 PF13732 DUF4162: Domain of un 22.0 2.6E+02 0.0057 20.7 5.4 45 181-228 26-72 (84)
45 TIGR03406 FeS_long_SufT probab 21.9 93 0.002 27.6 3.1 34 62-95 114-153 (174)
46 cd03420 SirA_RHOD_Pry_redox Si 21.4 3.1E+02 0.0067 20.0 5.4 53 164-226 2-57 (69)
47 PF08777 RRM_3: RNA binding mo 20.5 3.5E+02 0.0076 21.7 6.0 53 163-215 3-58 (105)
48 PRK13014 methionine sulfoxide 20.1 1.9E+02 0.0041 26.0 4.7 58 54-116 2-80 (186)
No 1
>PRK10671 copA copper exporting ATPase; Provisional
Probab=99.30 E-value=2.9e-11 Score=130.82 Aligned_cols=158 Identities=20% Similarity=0.303 Sum_probs=112.1
Q ss_pred cEEEEEEe-eechhHHHHHHHHHhCCCCcceeeecccCceEEeeccCCChHHHHHhhhccccccccccCCCCCCCchhhh
Q 019165 61 KEIVLKVY-MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVELLSPIPKPTAAEEE 139 (345)
Q Consensus 61 ~~v~l~V~-M~C~~Ca~kIe~~L~~l~GV~~v~vdl~~~kv~V~~~~~d~~~I~~~I~~~~G~~a~l~s~~p~~~~~~~~ 139 (345)
.+++|.|. |+|++|+.+|+++|.+++||.++.+++. +.++.... +...|...|++ +||.+.+.++...+......
T Consensus 3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~-~~~~i~~~i~~-~Gy~~~~~~~~~~~~~~~~~ 78 (834)
T PRK10671 3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTA-SAEALIETIKQ-AGYDASVSHPKAKPLTESSI 78 (834)
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecC-CHHHHHHHHHh-cCCccccccccccccccccc
Confidence 46899999 9999999999999999999999999995 44454444 78899999985 79998865422111000000
Q ss_pred h-hhccCCCCCCccCCCCCceEEEEEEe-cccCcccHHHHHHHHhccCCeeeEeecCCCCeEEEeecCChHHHHHHHHHh
Q 019165 140 K-KAEEKAPPKPEEKKEEPQVIIVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVDYVYKR 217 (345)
Q Consensus 140 ~-~~~~~~~~~~~~~~~~~~~~~v~l~V-gM~C~~Ca~kIek~L~kl~GV~~v~vdl~~~~v~V~~~~~~~~L~~~I~kk 217 (345)
. ............. ......++.|.| ||+|.+|+..|++.|..++||.++.+++.++++.|.+..+...+...+. .
T Consensus 79 ~~~~~~~~~~~~~~~-~~~~~~~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~~s~~~I~~~I~-~ 156 (834)
T PRK10671 79 PSEALTAASEELPAA-TADDDDSQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVE-K 156 (834)
T ss_pred Cchhhhhhhhhcccc-ccCcCceEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEccCCHHHHHHHHH-h
Confidence 0 0000000000000 001123577889 9999999999999999999999999999999888875567788888885 7
Q ss_pred cCCceEE
Q 019165 218 TGKHAVI 224 (345)
Q Consensus 218 ~G~~a~i 224 (345)
+||.+.+
T Consensus 157 ~Gy~a~~ 163 (834)
T PRK10671 157 AGYGAEA 163 (834)
T ss_pred cCCCccc
Confidence 9997653
No 2
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.25 E-value=5.5e-11 Score=125.13 Aligned_cols=141 Identities=23% Similarity=0.355 Sum_probs=119.1
Q ss_pred cEEEEEEe-eechhHHHHHHHHHhCCCCcceeeecccCceEEeec--cCCChHHHHHhhhccccccccccCCCCCCCchh
Q 019165 61 KEIVLKVY-MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKG--EKADPLKVLDRVQRKSHRQVELLSPIPKPTAAE 137 (345)
Q Consensus 61 ~~v~l~V~-M~C~~Ca~kIe~~L~~l~GV~~v~vdl~~~kv~V~~--~~~d~~~I~~~I~~~~G~~a~l~s~~p~~~~~~ 137 (345)
.+..|+|. |+|.+|+++|++.|+.+.||.++.+.+......+.. ..+++..+.+.|++ +||.+.+++....
T Consensus 69 ~~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie~-~gf~a~~i~~~~~----- 142 (951)
T KOG0207|consen 69 SKCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIED-LGFSAELIESVNG----- 142 (951)
T ss_pred ceeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHHh-cCccceehhcccC-----
Confidence 36789999 999999999999999999999999999999977653 33578899999995 7998876643320
Q ss_pred hhhhhccCCCCCCccCCCCCceEEEEEEe-cccCcccHHHHHHHHhccCCeeeEeecCCCCeEEEee---cCChHHHHHH
Q 019165 138 EEKKAEEKAPPKPEEKKEEPQVIIVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKG---VFDPPKLVDY 213 (345)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~v~l~V-gM~C~~Ca~kIek~L~kl~GV~~v~vdl~~~~v~V~~---~~~~~~L~~~ 213 (345)
.....+.|.| ||.|.+|+.+|+..|.+++||.++++++.++++.|.+ .+++.+|++.
T Consensus 143 -------------------~~~~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ 203 (951)
T KOG0207|consen 143 -------------------NSNQKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKA 203 (951)
T ss_pred -------------------CCCCcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHH
Confidence 0114688999 9999999999999999999999999999999999874 4789999999
Q ss_pred HHHhcCCceEEeeC
Q 019165 214 VYKRTGKHAVIVKQ 227 (345)
Q Consensus 214 I~kk~G~~a~iv~~ 227 (345)
|. .+||.+.+...
T Consensus 204 ie-~~~~~~~~~~~ 216 (951)
T KOG0207|consen 204 IE-ETGFEASVRPY 216 (951)
T ss_pred HH-hhcccceeeec
Confidence 94 89998766653
No 3
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.16 E-value=1.1e-10 Score=85.58 Aligned_cols=58 Identities=31% Similarity=0.555 Sum_probs=53.0
Q ss_pred EEEe-cccCcccHHHHHHHHhccCCeeeEeecCCCCeEEEeec---CChHHHHHHHHHhcCCc
Q 019165 163 VLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGV---FDPPKLVDYVYKRTGKH 221 (345)
Q Consensus 163 ~l~V-gM~C~~Ca~kIek~L~kl~GV~~v~vdl~~~~v~V~~~---~~~~~L~~~I~kk~G~~ 221 (345)
+|.| ||+|.+|+++|+++|.+++||.++.+|+.+++++|.+. ++++.|...|+ ++||.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~-~~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIE-KAGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHH-HTTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHH-HhCcC
Confidence 5889 99999999999999999999999999999999999865 45699999996 79984
No 4
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.16 E-value=1.5e-10 Score=121.86 Aligned_cols=134 Identities=22% Similarity=0.355 Sum_probs=114.8
Q ss_pred eechhHHHHHHHHHhCCCCcceeeecccCceEEeecc-CCChHHHHHhhhccccccccccCCCCCCCchhhhhhhccCCC
Q 019165 69 MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGE-KADPLKVLDRVQRKSHRQVELLSPIPKPTAAEEEKKAEEKAP 147 (345)
Q Consensus 69 M~C~~Ca~kIe~~L~~l~GV~~v~vdl~~~kv~V~~~-~~d~~~I~~~I~~~~G~~a~l~s~~p~~~~~~~~~~~~~~~~ 147 (345)
|+|..|++.|+.++++.+||.++.|++.+++.+|..+ ..+++.|.++|++ +||.+.+++...
T Consensus 3 mtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~~~~~~~~i~~~ied-~gf~~~~~~~~~---------------- 65 (951)
T KOG0207|consen 3 MTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYDNIVSPESIKETIED-MGFEASLLSDSE---------------- 65 (951)
T ss_pred ccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEeeccCHHHHHHHhhc-ccceeeecccCc----------------
Confidence 9999999999999999999999999999999777543 2488999999996 799987765432
Q ss_pred CCCccCCCCCceEEEEEEe-cccCcccHHHHHHHHhccCCeeeEeecCCCCeEEEee---cCChHHHHHHHHHhcCCceE
Q 019165 148 PKPEEKKEEPQVIIVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKG---VFDPPKLVDYVYKRTGKHAV 223 (345)
Q Consensus 148 ~~~~~~~~~~~~~~v~l~V-gM~C~~Ca~kIek~L~kl~GV~~v~vdl~~~~v~V~~---~~~~~~L~~~I~kk~G~~a~ 223 (345)
....+-.|+| ||+|.+|++.|++.|+++.||.++.+.+......|.. .++++.+...|. +.||.+.
T Consensus 66 ---------~~~~~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie-~~gf~a~ 135 (951)
T KOG0207|consen 66 ---------ITASKCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIE-DLGFSAE 135 (951)
T ss_pred ---------cccceeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHH-hcCccce
Confidence 1123578999 9999999999999999999999999999999999873 478899999996 8999998
Q ss_pred EeeCCC
Q 019165 224 IVKQEP 229 (345)
Q Consensus 224 iv~~~~ 229 (345)
++....
T Consensus 136 ~i~~~~ 141 (951)
T KOG0207|consen 136 LIESVN 141 (951)
T ss_pred ehhccc
Confidence 776654
No 5
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=98.96 E-value=1.6e-09 Score=79.42 Aligned_cols=59 Identities=32% Similarity=0.574 Sum_probs=52.8
Q ss_pred EEEEe-eechhHHHHHHHHHhCCCCcceeeecccCceEEeeccC--CChHHHHHhhhcccccc
Q 019165 64 VLKVY-MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEK--ADPLKVLDRVQRKSHRQ 123 (345)
Q Consensus 64 ~l~V~-M~C~~Ca~kIe~~L~~l~GV~~v~vdl~~~kv~V~~~~--~d~~~I~~~I~~~~G~~ 123 (345)
+|+|. |+|.+|+++|+++|.+++||.++.+|+.+++++|.++. +++..|..+|++ +||.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~-~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK-AGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH-TTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH-hCcC
Confidence 58998 99999999999999999999999999999999997653 356999999996 6984
No 6
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.92 E-value=4.9e-09 Score=79.57 Aligned_cols=64 Identities=25% Similarity=0.426 Sum_probs=56.7
Q ss_pred EEEEEe-cccCcccHHHHHHHHhccCCeeeEeecCCCCeEEEe--e-cCChHHHHHHHHHhcCCceEEe
Q 019165 161 IVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVK--G-VFDPPKLVDYVYKRTGKHAVIV 225 (345)
Q Consensus 161 ~v~l~V-gM~C~~Ca~kIek~L~kl~GV~~v~vdl~~~~v~V~--~-~~~~~~L~~~I~kk~G~~a~iv 225 (345)
...|+| ||+|.+|+..|+++|..+.||.++.+|+..+++.|. + .++.+.|+.+|. .+||.+..+
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~-~aGy~~~~~ 70 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIE-DAGYKVEEI 70 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHH-HcCCCeeec
Confidence 578999 999999999999999999999999999999777765 4 479999999995 899987653
No 7
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.85 E-value=1.8e-08 Score=76.81 Aligned_cols=67 Identities=49% Similarity=0.802 Sum_probs=60.0
Q ss_pred eEEEEEEecccCcccHHHHHHHHhccCCeeeEeecCCCCeEEEeecCChHHHHHHHHHhcC-CceEEee
Q 019165 159 VIIVVLKVHMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVDYVYKRTG-KHAVIVK 226 (345)
Q Consensus 159 ~~~v~l~VgM~C~~Ca~kIek~L~kl~GV~~v~vdl~~~~v~V~~~~~~~~L~~~I~kk~G-~~a~iv~ 226 (345)
....++.++|||.+|..+|.+.|+.+.||.++.+|...++++|.|.+++..|+..|++ .| ..+.+|.
T Consensus 4 ~~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k-~~~k~~~~~~ 71 (73)
T KOG1603|consen 4 IKTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKK-TGGKRAELWK 71 (73)
T ss_pred ccEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHh-cCCCceEEec
Confidence 3467888899999999999999999999999999999999999999999999999974 65 6666654
No 8
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.82 E-value=1.2e-08 Score=77.41 Aligned_cols=65 Identities=26% Similarity=0.441 Sum_probs=55.2
Q ss_pred CcEEEEEEe-eechhHHHHHHHHHhCCCCcceeeecccCceEEe--eccCCChHHHHHhhhcccccccc
Q 019165 60 PKEIVLKVY-MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIV--KGEKADPLKVLDRVQRKSHRQVE 125 (345)
Q Consensus 60 ~~~v~l~V~-M~C~~Ca~kIe~~L~~l~GV~~v~vdl~~~kv~V--~~~~~d~~~I~~~I~~~~G~~a~ 125 (345)
+..++|+|. |+|.+|+.+|+++|..++||.++.+++..+++.| ++..++...|+.+|.. +||.+.
T Consensus 1 ~~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~-aGy~~~ 68 (71)
T COG2608 1 MMKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIED-AGYKVE 68 (71)
T ss_pred CceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHH-cCCCee
Confidence 356789999 9999999999999999999999999999966554 4433488999999996 699764
No 9
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.59 E-value=1.4e-07 Score=71.83 Aligned_cols=66 Identities=52% Similarity=0.883 Sum_probs=57.5
Q ss_pred CCcEEEEEEeeechhHHHHHHHHHhCCCCcceeeecccCceEEeeccCCChHHHHHhhhcccccccc
Q 019165 59 PPKEIVLKVYMHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVE 125 (345)
Q Consensus 59 ~~~~v~l~V~M~C~~Ca~kIe~~L~~l~GV~~v~vdl~~~kv~V~~~~~d~~~I~~~I~~~~G~~a~ 125 (345)
.++...+.+.|||.+|...|.+.|..+.||.++.+|+..++++|.+.. ++..|+..|.+..+..+.
T Consensus 3 ~~~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~-~p~~vl~~l~k~~~k~~~ 68 (73)
T KOG1603|consen 3 PIKTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNV-DPVKLLKKLKKTGGKRAE 68 (73)
T ss_pred CccEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEec-CHHHHHHHHHhcCCCceE
Confidence 456778888899999999999999999999999999999999999986 999999999863225443
No 10
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=98.43 E-value=6.3e-07 Score=80.15 Aligned_cols=71 Identities=25% Similarity=0.418 Sum_probs=64.9
Q ss_pred eEEEEEEecccCcccHHHHHHHHhccCCeeeEeecCCCCeEEEeecCChHHHHHHHHHhcCCceEEeeCCCC
Q 019165 159 VIIVVLKVHMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVDYVYKRTGKHAVIVKQEPE 230 (345)
Q Consensus 159 ~~~v~l~VgM~C~~Ca~kIek~L~kl~GV~~v~vdl~~~~v~V~~~~~~~~L~~~I~kk~G~~a~iv~~~~~ 230 (345)
...+.|.|.|+|.+|++.|+..|..++||.++.||+..+.|.|.+...+..|.+.|+ .+|++|.+...+.+
T Consensus 6 ~~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le-~tGr~Avl~G~G~p 76 (247)
T KOG4656|consen 6 TYEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLE-NTGRDAVLRGAGKP 76 (247)
T ss_pred ceeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHH-hhChheEEecCCch
Confidence 346789999999999999999999999999999999999999999999999999996 79999998877653
No 11
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=98.30 E-value=1.6e-06 Score=77.65 Aligned_cols=70 Identities=27% Similarity=0.463 Sum_probs=62.1
Q ss_pred CCcEEEEEEeeechhHHHHHHHHHhCCCCcceeeecccCceEEeeccCCChHHHHHhhhccccccccccCCC
Q 019165 59 PPKEIVLKVYMHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVELLSPI 130 (345)
Q Consensus 59 ~~~~v~l~V~M~C~~Ca~kIe~~L~~l~GV~~v~vdl~~~kv~V~~~~~d~~~I~~~I~~~~G~~a~l~s~~ 130 (345)
...++.|.|.|+|.+|++.|+..|..++||.+|.||+..+.|.|.+.. .+..|.+.|+. +|.++.|....
T Consensus 5 ~~~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~-p~s~i~~~le~-tGr~Avl~G~G 74 (247)
T KOG4656|consen 5 DTYEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSV-PPSEIQNTLEN-TGRDAVLRGAG 74 (247)
T ss_pred CceeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccC-ChHHHHHHHHh-hChheEEecCC
Confidence 345688999999999999999999999999999999999999998886 88999999995 89988766443
No 12
>PLN02957 copper, zinc superoxide dismutase
Probab=97.82 E-value=9.3e-05 Score=69.00 Aligned_cols=70 Identities=30% Similarity=0.517 Sum_probs=61.8
Q ss_pred EEEEEEecccCcccHHHHHHHHhccCCeeeEeecCCCCeEEEeecCChHHHHHHHHHhcCCceEEeeCCCC
Q 019165 160 IIVVLKVHMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVDYVYKRTGKHAVIVKQEPE 230 (345)
Q Consensus 160 ~~v~l~VgM~C~~Ca~kIek~L~kl~GV~~v~vdl~~~~v~V~~~~~~~~L~~~I~kk~G~~a~iv~~~~~ 230 (345)
.++.|.|+|+|.+|+..|++.|..++||.++.+++..++++|.+......|+..|. ++||.+.++....+
T Consensus 6 ~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe-~~Gy~a~~~~~~~~ 75 (238)
T PLN02957 6 LLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALE-QTGRKARLIGQGDP 75 (238)
T ss_pred EEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHH-HcCCcEEEecCCCc
Confidence 35667789999999999999999999999999999999999987678888999995 89999988877654
No 13
>PRK10671 copA copper exporting ATPase; Provisional
Probab=97.60 E-value=0.00011 Score=79.99 Aligned_cols=64 Identities=19% Similarity=0.387 Sum_probs=56.3
Q ss_pred EEEEEEe-cccCcccHHHHHHHHhccCCeeeEeecCCCCeEEEeecCChHHHHHHHHHhcCCceEEee
Q 019165 160 IIVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGVFDPPKLVDYVYKRTGKHAVIVK 226 (345)
Q Consensus 160 ~~v~l~V-gM~C~~Ca~kIek~L~kl~GV~~v~vdl~~~~v~V~~~~~~~~L~~~I~kk~G~~a~iv~ 226 (345)
++++|.| ||+|.+|+.+|+++|.+++||.++.+|+ .+.+|.+..+.+.|...|. ++||.+.+..
T Consensus 3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~--~~~~v~~~~~~~~i~~~i~-~~Gy~~~~~~ 67 (834)
T PRK10671 3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSI--TEAHVTGTASAEALIETIK-QAGYDASVSH 67 (834)
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEee--eEEEEEecCCHHHHHHHHH-hcCCcccccc
Confidence 4688999 9999999999999999999999999999 4556666678899999995 8999998764
No 14
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.48 E-value=0.0002 Score=76.34 Aligned_cols=62 Identities=31% Similarity=0.470 Sum_probs=54.9
Q ss_pred EEEEEe-cccCcccHHHHHHHHhccCCeeeEeecCCCCeEEEeec---CC-hHHHHHHHHHhcCCceEE
Q 019165 161 IVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGV---FD-PPKLVDYVYKRTGKHAVI 224 (345)
Q Consensus 161 ~v~l~V-gM~C~~Ca~kIek~L~kl~GV~~v~vdl~~~~v~V~~~---~~-~~~L~~~I~kk~G~~a~i 224 (345)
+..|.| ||+|.+|+++|+ .|.+++||..+.+|+.+++++|... .+ .+.+...++ ..||.+..
T Consensus 3 ~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~-~~gy~~~~ 69 (713)
T COG2217 3 ETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVE-KAGYSARL 69 (713)
T ss_pred eeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHH-hcCccccc
Confidence 467999 999999999999 9999999999999999999998742 44 688999995 79998865
No 15
>PLN02957 copper, zinc superoxide dismutase
Probab=97.21 E-value=0.0011 Score=61.90 Aligned_cols=67 Identities=27% Similarity=0.407 Sum_probs=56.9
Q ss_pred cEEEEEEeeechhHHHHHHHHHhCCCCcceeeecccCceEEeeccCCChHHHHHhhhccccccccccCC
Q 019165 61 KEIVLKVYMHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVELLSP 129 (345)
Q Consensus 61 ~~v~l~V~M~C~~Ca~kIe~~L~~l~GV~~v~vdl~~~kv~V~~~~~d~~~I~~~I~~~~G~~a~l~s~ 129 (345)
.++.|.+.|+|.+|+..|+..|..++||..+.+++..+++.|.... ....|+..|+. +||.+.+++.
T Consensus 6 ~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~-~~~~I~~aIe~-~Gy~a~~~~~ 72 (238)
T PLN02957 6 LLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSS-PVKAMTAALEQ-TGRKARLIGQ 72 (238)
T ss_pred EEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecC-CHHHHHHHHHH-cCCcEEEecC
Confidence 4566777799999999999999999999999999999999987654 77888888885 6998876654
No 16
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=97.20 E-value=0.0022 Score=43.97 Aligned_cols=61 Identities=21% Similarity=0.339 Sum_probs=49.9
Q ss_pred EEEEEe-cccCcccHHHHHHHHhccCCeeeEeecCCCCeEEEee---cCChHHHHHHHHHhcCCce
Q 019165 161 IVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKG---VFDPPKLVDYVYKRTGKHA 222 (345)
Q Consensus 161 ~v~l~V-gM~C~~Ca~kIek~L~kl~GV~~v~vdl~~~~v~V~~---~~~~~~L~~~I~kk~G~~a 222 (345)
+..+.| ||+|..|...|...+..+.++..+.+++....+.|.. ..+...+...+. ..||.+
T Consensus 3 ~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~ 67 (68)
T TIGR00003 3 KFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAIL-DAGYEV 67 (68)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHH-HcCCCc
Confidence 456889 9999999999999999999999999999999888864 245666766674 677753
No 17
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=96.96 E-value=0.0013 Score=70.13 Aligned_cols=63 Identities=25% Similarity=0.490 Sum_probs=53.7
Q ss_pred cEEEEEEe-eechhHHHHHHHHHhCCCCcceeeecccCceEEeeccC--CC-hHHHHHhhhcccccccc
Q 019165 61 KEIVLKVY-MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEK--AD-PLKVLDRVQRKSHRQVE 125 (345)
Q Consensus 61 ~~v~l~V~-M~C~~Ca~kIe~~L~~l~GV~~v~vdl~~~kv~V~~~~--~d-~~~I~~~I~~~~G~~a~ 125 (345)
.++.|.|. |+|++|+++|+ +|.+++||..+.||+.++++.|..+. .+ ...+...++. .||.+.
T Consensus 2 ~~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~-~gy~~~ 68 (713)
T COG2217 2 RETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEK-AGYSAR 68 (713)
T ss_pred ceeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHh-cCcccc
Confidence 35789999 99999999999 99999999999999999999887542 24 6788888885 699765
No 18
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=96.46 E-value=0.018 Score=39.26 Aligned_cols=62 Identities=19% Similarity=0.403 Sum_probs=47.3
Q ss_pred cEEEEEEe-eechhHHHHHHHHHhCCCCcceeeecccCceEEeecc--CCChHHHHHhhhcccccc
Q 019165 61 KEIVLKVY-MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGE--KADPLKVLDRVQRKSHRQ 123 (345)
Q Consensus 61 ~~v~l~V~-M~C~~Ca~kIe~~L~~l~GV~~v~vdl~~~kv~V~~~--~~d~~~I~~~I~~~~G~~ 123 (345)
.++.|.|. |+|..|+..|+..+..+.++..+.+++....+.+... ..+...+...+.. .||.
T Consensus 2 ~~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~ 66 (68)
T TIGR00003 2 QKFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILD-AGYE 66 (68)
T ss_pred cEEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHH-cCCC
Confidence 35678999 9999999999999999999999999999988777542 1245555555543 4664
No 19
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=95.00 E-value=0.053 Score=58.62 Aligned_cols=64 Identities=16% Similarity=0.228 Sum_probs=51.6
Q ss_pred eEEEEEEe-cccCcccHHHHHHHHhccCCeeeEeecCCCCeEEEeec-CChHHHHHHHHHhcCCceE
Q 019165 159 VIIVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKGV-FDPPKLVDYVYKRTGKHAV 223 (345)
Q Consensus 159 ~~~v~l~V-gM~C~~Ca~kIek~L~kl~GV~~v~vdl~~~~v~V~~~-~~~~~L~~~I~kk~G~~a~ 223 (345)
..++.+.| ||+|.+|+..|+..+..++||.++.+++.+.++.|... .....+...+. .+||.+.
T Consensus 52 ~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~-~~Gy~a~ 117 (741)
T PRK11033 52 GTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQ-KAGFSLR 117 (741)
T ss_pred CceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHHH-hcccccc
Confidence 34677889 99999999999999999999999999999998887632 11256667774 6898763
No 20
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=93.53 E-value=0.17 Score=54.66 Aligned_cols=66 Identities=27% Similarity=0.406 Sum_probs=51.5
Q ss_pred CCcEEEEEEe-eechhHHHHHHHHHhCCCCcceeeecccCceEEeeccCCChHHHHHhhhcccccccc
Q 019165 59 PPKEIVLKVY-MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVE 125 (345)
Q Consensus 59 ~~~~v~l~V~-M~C~~Ca~kIe~~L~~l~GV~~v~vdl~~~kv~V~~~~~d~~~I~~~I~~~~G~~a~ 125 (345)
...++.|.+. |+|.+|+..|+..|..++||.++.+++.+.++.+..+......+...+.. +||.+.
T Consensus 51 ~~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~~-~Gy~a~ 117 (741)
T PRK11033 51 SGTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQK-AGFSLR 117 (741)
T ss_pred CCceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHHHh-cccccc
Confidence 3456788899 99999999999999999999999999999987775332112556666664 688764
No 21
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=87.66 E-value=4.4 Score=30.05 Aligned_cols=62 Identities=23% Similarity=0.376 Sum_probs=45.8
Q ss_pred EEEEEe-cccCcccHHHHHHHHhccCCeeeEeecCCCCeEEEee---cCChHHHHHHHHHhcCCceE
Q 019165 161 IVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKG---VFDPPKLVDYVYKRTGKHAV 223 (345)
Q Consensus 161 ~v~l~V-gM~C~~Ca~kIek~L~kl~GV~~v~vdl~~~~v~V~~---~~~~~~L~~~I~kk~G~~a~ 223 (345)
++.+.+ ++.|..|...+...+....++....+++....+.+.. ..+...+...+. ..||.+.
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~ 89 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATT-DAGYPSS 89 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHH-hcCCCeE
Confidence 355778 9999999999999999999988888888877765542 234555555553 5777654
No 22
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=79.79 E-value=11 Score=22.70 Aligned_cols=38 Identities=42% Similarity=0.735 Sum_probs=30.5
Q ss_pred Ee-cccCcccHHHHHHHHhccCCeeeEeecCCCCeEEEe
Q 019165 165 KV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVK 202 (345)
Q Consensus 165 ~V-gM~C~~Ca~kIek~L~kl~GV~~v~vdl~~~~v~V~ 202 (345)
.+ ++.|..|...+...+..+.++....+++....+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (63)
T cd00371 3 SVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVE 41 (63)
T ss_pred eECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEE
Confidence 35 789999999999999899998877777766665554
No 23
>PRK13748 putative mercuric reductase; Provisional
Probab=73.81 E-value=11 Score=39.04 Aligned_cols=64 Identities=23% Similarity=0.404 Sum_probs=48.3
Q ss_pred EEEe-cccCcccHHHHHHHHhccCCeeeEeecCCCCeEEEee--cCChHHHHHHHHHhcCCceEEeeC
Q 019165 163 VLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVKG--VFDPPKLVDYVYKRTGKHAVIVKQ 227 (345)
Q Consensus 163 ~l~V-gM~C~~Ca~kIek~L~kl~GV~~v~vdl~~~~v~V~~--~~~~~~L~~~I~kk~G~~a~iv~~ 227 (345)
.+.+ +|+|.+|..+++..+..++++....+++....+.+.. ..+...+...+. ..|+.+.+...
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i~-~~g~~~~~~~~ 69 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAVA-GLGYRATLADA 69 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHHH-HcCCeeeccCc
Confidence 3667 9999999999999999999999999999888766653 234555656663 67776654444
No 24
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=66.23 E-value=19 Score=26.49 Aligned_cols=42 Identities=29% Similarity=0.490 Sum_probs=33.8
Q ss_pred EEEEEEe-eechhHHHHHHHHHhCCCCcceeeecccCceEEee
Q 019165 62 EIVLKVY-MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVK 103 (345)
Q Consensus 62 ~v~l~V~-M~C~~Ca~kIe~~L~~l~GV~~v~vdl~~~kv~V~ 103 (345)
++.+.+. ++|..|...+...+....++....+++....+.+.
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVT 66 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEE
Confidence 4567788 99999999999999999998877777776665553
No 25
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=61.40 E-value=25 Score=25.66 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=37.5
Q ss_pred EEEe-cccCcccHHHHHHHHhccCCeeeEeecCCCCeEEEe--ecCChHHHHHHHHHhcCCceEEe
Q 019165 163 VLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVK--GVFDPPKLVDYVYKRTGKHAVIV 225 (345)
Q Consensus 163 ~l~V-gM~C~~Ca~kIek~L~kl~GV~~v~vdl~~~~v~V~--~~~~~~~L~~~I~kk~G~~a~iv 225 (345)
+|.+ |+.|+...-.+.++|..++.- ..+.|. ......+|...+. ..||.+..+
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~~G---------~~l~v~~d~~~~~~di~~~~~-~~g~~~~~~ 57 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELPPG---------EVLEVLVDDPAAVEDIPRWCE-ENGYEVVEV 57 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSGTT----------EEEEEESSTTHHHHHHHHHH-HHTEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcCCC---------CEEEEEECCccHHHHHHHHHH-HCCCEEEEE
Confidence 5778 999999999999999998432 344443 3355677888885 799875444
No 26
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=60.84 E-value=29 Score=27.57 Aligned_cols=67 Identities=19% Similarity=0.224 Sum_probs=44.4
Q ss_pred CCcEEEEEEe-eechhHHHHHHHHHhCCCCcceeeeccc-------CceEEeeccCCChHHHHHhhhccccccccc
Q 019165 59 PPKEIVLKVY-MHCEGCARKVRRCLKGFEGVEDVITDCK-------THKVIVKGEKADPLKVLDRVQRKSHRQVEL 126 (345)
Q Consensus 59 ~~~~v~l~V~-M~C~~Ca~kIe~~L~~l~GV~~v~vdl~-------~~kv~V~~~~~d~~~I~~~I~~~~G~~a~l 126 (345)
+..+++|.+. -+-.--.--+-..|++++||..|++.+. +-.++|.|..++...|.+.|+. .|..++.
T Consensus 4 ~iRRlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~-~Gg~IHS 78 (97)
T COG1888 4 GIRRLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEE-LGGAIHS 78 (97)
T ss_pred cceeeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHH-cCCeeee
Confidence 4556667666 4433344456677888998887655432 3336667766699999999995 6876553
No 27
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=58.01 E-value=83 Score=25.06 Aligned_cols=68 Identities=19% Similarity=0.343 Sum_probs=43.9
Q ss_pred eEEEEEEe-cccCcccHHHHHHHHhccCCeeeEeec-----CCC--CeEEEee-cCChHHHHHHHHHhcCCceEEeeC
Q 019165 159 VIIVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPD-----LKN--SQVTVKG-VFDPPKLVDYVYKRTGKHAVIVKQ 227 (345)
Q Consensus 159 ~~~v~l~V-gM~C~~Ca~kIek~L~kl~GV~~v~vd-----l~~--~~v~V~~-~~~~~~L~~~I~kk~G~~a~iv~~ 227 (345)
..+++|.| --+-.--.-.+-..|+++.||..+.+. ..+ -.++|.| +++.+.|...| +.+|-.++.++.
T Consensus 5 iRRlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~i-E~~Gg~IHSiDe 81 (97)
T COG1888 5 IRRLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVI-EELGGAIHSIDE 81 (97)
T ss_pred ceeeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHH-HHcCCeeeehhh
Confidence 34567777 333333345566778888887665543 333 3445555 59999999999 479977766554
No 28
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=57.40 E-value=31 Score=20.43 Aligned_cols=37 Identities=41% Similarity=0.697 Sum_probs=27.7
Q ss_pred Ee-eechhHHHHHHHHHhCCCCcceeeecccCceEEee
Q 019165 67 VY-MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVK 103 (345)
Q Consensus 67 V~-M~C~~Ca~kIe~~L~~l~GV~~v~vdl~~~kv~V~ 103 (345)
+. +.|..|...+...+....++....+++....+.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (63)
T cd00371 4 VEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVE 41 (63)
T ss_pred ECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEE
Confidence 55 88999999999888888887766666555554443
No 29
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=50.42 E-value=1.2e+02 Score=24.29 Aligned_cols=67 Identities=18% Similarity=0.310 Sum_probs=43.0
Q ss_pred eEEEEEEe-cccCcccHHHHHHHHhccCCeeeEeec-----CCCCeEE--Eee-cCChHHHHHHHHHhcCCceEEeeC
Q 019165 159 VIIVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPD-----LKNSQVT--VKG-VFDPPKLVDYVYKRTGKHAVIVKQ 227 (345)
Q Consensus 159 ~~~v~l~V-gM~C~~Ca~kIek~L~kl~GV~~v~vd-----l~~~~v~--V~~-~~~~~~L~~~I~kk~G~~a~iv~~ 227 (345)
..+++|.| --|-++ .-.+-..|..+.||..+.+. ..+..+. |.| .++.+.|...|. .+|-.++.++.
T Consensus 4 irRlVLDVlKP~~p~-i~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie-~~Gg~IHSIDe 79 (95)
T PF02680_consen 4 IRRLVLDVLKPHEPS-IVELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIE-ELGGVIHSIDE 79 (95)
T ss_dssp EEEEEEEEEEESSS--HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHH-HTT-EEEEEEE
T ss_pred eeEEEEEeecCCCCC-HHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHH-HcCCeEEeeee
Confidence 45678887 334433 45677789999998776653 3344443 346 499999999995 79866665543
No 30
>PRK13748 putative mercuric reductase; Provisional
Probab=47.84 E-value=55 Score=33.91 Aligned_cols=61 Identities=21% Similarity=0.316 Sum_probs=42.3
Q ss_pred EEEEe-eechhHHHHHHHHHhCCCCcceeeecccCceEEeecc-CCChHHHHHhhhcccccccc
Q 019165 64 VLKVY-MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGE-KADPLKVLDRVQRKSHRQVE 125 (345)
Q Consensus 64 ~l~V~-M~C~~Ca~kIe~~L~~l~GV~~v~vdl~~~kv~V~~~-~~d~~~I~~~I~~~~G~~a~ 125 (345)
.+.+. |+|.+|...++..+..++++....+++....+.+... ..+...+...+.. .|+...
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i~~-~g~~~~ 65 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAVAG-LGYRAT 65 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHHHH-cCCeee
Confidence 46678 9999999999999999999888888888777655421 1134444444442 466543
No 31
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=47.04 E-value=1.4e+02 Score=28.92 Aligned_cols=90 Identities=19% Similarity=0.160 Sum_probs=57.2
Q ss_pred EEEEEeeechhHHHHHHHHHhCCCCcceeeecccCceEEeeccCCChHHHHHhhhcccccccc-ccCCCCCCCchhhhhh
Q 019165 63 IVLKVYMHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVE-LLSPIPKPTAAEEEKK 141 (345)
Q Consensus 63 v~l~V~M~C~~Ca~kIe~~L~~l~GV~~v~vdl~~~kv~V~~~~~d~~~I~~~I~~~~G~~a~-l~s~~p~~~~~~~~~~ 141 (345)
+.|.++.+ ..|...++..|.+++||.++++- +.++-++.++...|+... .++..
T Consensus 63 vyL~~~~~-~~~~~~v~~~i~~~~gV~~v~~~-------------sre~~l~~L~~~lg~~~~~~l~~n----------- 117 (297)
T COG2177 63 VYLQIDAD-QDDAALVREKIEGIPGVKSVRFI-------------SREEALKELQPWLGFGALLMLDEN----------- 117 (297)
T ss_pred EEEecCCC-hHHHHHHHHHHhcCCCcceEEEe-------------CHHHHHHHHHHHcCchhhhcCCCC-----------
Confidence 33333333 88999999999999999987652 555555555555676411 11111
Q ss_pred hccCCCCCCccCCCCCceEEEEEEecccCcccHHHHHHHHhccCCeeeEeecC
Q 019165 142 AEEKAPPKPEEKKEEPQVIIVVLKVHMHCEGCSLEIKKRILRMEGVESAEPDL 194 (345)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~v~l~VgM~C~~Ca~kIek~L~kl~GV~~v~vdl 194 (345)
|-...+++++ +-+.-...+.+.|+.++||.+++.+.
T Consensus 118 ---------------PLP~~~vV~~--~~p~~~~~i~~~l~~l~gV~~V~~~~ 153 (297)
T COG2177 118 ---------------PLPDVFVVTP--DDPPQVKAIAAALRDLPGVAEVDDDR 153 (297)
T ss_pred ---------------CCCceEEEEe--CCCccHHHHHHHHHcCccceehhcch
Confidence 1112344454 22677889999999999999876543
No 32
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=46.64 E-value=52 Score=26.35 Aligned_cols=64 Identities=19% Similarity=0.334 Sum_probs=42.0
Q ss_pred CcEEEEEEe-eechhHHHHHHHHHhCCCCcceeeecc-----cCce--EEeeccCCChHHHHHhhhcccccccc
Q 019165 60 PKEIVLKVY-MHCEGCARKVRRCLKGFEGVEDVITDC-----KTHK--VIVKGEKADPLKVLDRVQRKSHRQVE 125 (345)
Q Consensus 60 ~~~v~l~V~-M~C~~Ca~kIe~~L~~l~GV~~v~vdl-----~~~k--v~V~~~~~d~~~I~~~I~~~~G~~a~ 125 (345)
..+++|.|. -|-. -.--+-..|..++||..|.+.+ .+.. ++|.|..++...|.++|+. +|-.+.
T Consensus 4 irRlVLDVlKP~~p-~i~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~-~Gg~IH 75 (95)
T PF02680_consen 4 IRRLVLDVLKPHEP-SIVELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEE-LGGVIH 75 (95)
T ss_dssp EEEEEEEEEEESSS--HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHH-TT-EEE
T ss_pred eeEEEEEeecCCCC-CHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHH-cCCeEE
Confidence 456777777 5333 3446778899999998876543 2333 5566766699999999996 576554
No 33
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=45.64 E-value=31 Score=25.36 Aligned_cols=33 Identities=21% Similarity=0.493 Sum_probs=21.2
Q ss_pred cEEEEEEeeechhHH------HHHHHHHhCCCCcceeee
Q 019165 61 KEIVLKVYMHCEGCA------RKVRRCLKGFEGVEDVIT 93 (345)
Q Consensus 61 ~~v~l~V~M~C~~Ca------~kIe~~L~~l~GV~~v~v 93 (345)
.++.|.+.+..++|. ..|+.+|..++||.+|.|
T Consensus 34 ~~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 34 GKVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp CEEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred CEEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 345566665555554 568888999999988765
No 34
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=43.37 E-value=36 Score=25.02 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=20.1
Q ss_pred EEEEEecccCccc------HHHHHHHHhccCCeeeEee
Q 019165 161 IVVLKVHMHCEGC------SLEIKKRILRMEGVESAEP 192 (345)
Q Consensus 161 ~v~l~VgM~C~~C------a~kIek~L~kl~GV~~v~v 192 (345)
++.|.+.+..++| ...|+.+|..++||.+++|
T Consensus 35 ~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 35 KVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp EEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred EEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 3455554444444 4678888999999988865
No 35
>PRK11018 hypothetical protein; Provisional
Probab=37.91 E-value=1.5e+02 Score=22.43 Aligned_cols=55 Identities=7% Similarity=-0.046 Sum_probs=39.6
Q ss_pred EEEEEe-cccCcccHHHHHHHHhccCCeeeEeecCCCCeEEEe--ecCChHHHHHHHHHhcCCceEEe
Q 019165 161 IVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVK--GVFDPPKLVDYVYKRTGKHAVIV 225 (345)
Q Consensus 161 ~v~l~V-gM~C~~Ca~kIek~L~kl~GV~~v~vdl~~~~v~V~--~~~~~~~L~~~I~kk~G~~a~iv 225 (345)
..+|.+ |+.|+.-.-+.+++|.++..- ..+.|. .......|...+. ..||.+...
T Consensus 8 ~~~lD~rG~~CP~Pvl~~kk~l~~l~~G---------~~L~V~~d~~~a~~di~~~~~-~~G~~v~~~ 65 (78)
T PRK11018 8 DYRLDMVGEPCPYPAVATLEALPQLKKG---------EILEVVSDCPQSINNIPLDAR-NHGYTVLDI 65 (78)
T ss_pred CeeEECCCCcCCHHHHHHHHHHHhCCCC---------CEEEEEeCCccHHHHHHHHHH-HcCCEEEEE
Confidence 367888 999999999999999988522 233333 3355677788884 799987543
No 36
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=35.87 E-value=1.1e+02 Score=21.96 Aligned_cols=51 Identities=12% Similarity=0.275 Sum_probs=35.0
Q ss_pred EEe-cccCcccHHHHHHHHhccCCeeeEeecCCCCeEEEe--ecCChHHHHHHHHHhcCCceEEe
Q 019165 164 LKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVK--GVFDPPKLVDYVYKRTGKHAVIV 225 (345)
Q Consensus 164 l~V-gM~C~~Ca~kIek~L~kl~GV~~v~vdl~~~~v~V~--~~~~~~~L~~~I~kk~G~~a~iv 225 (345)
|.+ |+.|+.-.-.+.++| .+.. ++.+.|. .......|...++ ..||.+.+.
T Consensus 2 lD~rG~~CP~P~l~~k~al-~~~~---------g~~l~v~~d~~~s~~~i~~~~~-~~G~~~~~~ 55 (67)
T cd03421 2 IDARGLACPQPVIKTKKAL-ELEA---------GGEIEVLVDNEVAKENVSRFAE-SRGYEVSVE 55 (67)
T ss_pred cccCCCCCCHHHHHHHHHH-hcCC---------CCEEEEEEcChhHHHHHHHHHH-HcCCEEEEE
Confidence 456 899999999999998 5532 1234443 2345578888885 799988543
No 37
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=32.09 E-value=85 Score=27.85 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=21.4
Q ss_pred ccHHHHHHHHhccCCeeeEeecCCCCe
Q 019165 172 GCSLEIKKRILRMEGVESAEPDLKNSQ 198 (345)
Q Consensus 172 ~Ca~kIek~L~kl~GV~~v~vdl~~~~ 198 (345)
+|-+-++..+.+++||.++.+-.+++.
T Consensus 11 GCFWg~E~~f~~~~GV~~t~vGYagG~ 37 (172)
T PRK14054 11 GCFWGMEAPFDRVKGVISTRVGYTGGH 37 (172)
T ss_pred CChhhhHHHHccCCCEEEEEeeecCCC
Confidence 466677778889999999998777664
No 38
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=28.15 E-value=2.4e+02 Score=21.44 Aligned_cols=59 Identities=20% Similarity=0.124 Sum_probs=41.1
Q ss_pred hHHHHHhhhccccccccccCCCCCCCchhhhhhhccCCCCCCccCCCCCceEEEEEEecccCcccHHHHHHHHhccCCee
Q 019165 109 PLKVLDRVQRKSHRQVELLSPIPKPTAAEEEKKAEEKAPPKPEEKKEEPQVIIVVLKVHMHCEGCSLEIKKRILRMEGVE 188 (345)
Q Consensus 109 ~~~I~~~I~~~~G~~a~l~s~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~VgM~C~~Ca~kIek~L~kl~GV~ 188 (345)
...|+..++. -||.+..++..+- ..+...+++|.|+ .......|.+-|.++.+|.
T Consensus 17 L~Ri~~lf~r-RGfnI~sl~v~~t----------------------~~~~~sriti~v~--~~~~i~ql~kQL~KL~dV~ 71 (76)
T PRK11152 17 LERVLRVVRH-RGFQVCSMNMTQN----------------------TDAQNINIELTVA--SERPIDLLSSQLNKLVDVA 71 (76)
T ss_pred HHHHHHHHhc-CCeeeeeEEeeec----------------------CCCCEEEEEEEEC--CCchHHHHHHHHhcCcCeE
Confidence 4556666675 4998875544320 0123566777774 5889999999999999998
Q ss_pred eEee
Q 019165 189 SAEP 192 (345)
Q Consensus 189 ~v~v 192 (345)
.+.+
T Consensus 72 ~V~~ 75 (76)
T PRK11152 72 HVEI 75 (76)
T ss_pred EEEE
Confidence 8875
No 39
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=27.05 E-value=1.1e+02 Score=26.53 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=31.5
Q ss_pred CcEEEEEEe-eechhHHHHHHHHHhCCCCcceeeeccc-CceEE
Q 019165 60 PKEIVLKVY-MHCEGCARKVRRCLKGFEGVEDVITDCK-THKVI 101 (345)
Q Consensus 60 ~~~v~l~V~-M~C~~Ca~kIe~~L~~l~GV~~v~vdl~-~~kv~ 101 (345)
...+++.|+ -.|..|..-|.....+ .|+.++.|... ++++.
T Consensus 99 g~~~tm~Vdr~vC~~C~~~i~~~a~~-lGl~~L~I~~~~sG~~~ 141 (146)
T PF14437_consen 99 GRSMTMYVDRDVCGYCGGDIPSMAEK-LGLKSLTIHEPDSGKVY 141 (146)
T ss_pred CCeEEEEECcccchHHHHHHHHHHHH-cCCCeEEEEecCCCcEE
Confidence 456889999 9999999888766665 58888887766 66544
No 40
>PRK00058 methionine sulfoxide reductase A; Provisional
Probab=26.84 E-value=1.5e+02 Score=27.37 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=27.3
Q ss_pred CcEEEEEEeeechhHHHHHHHHHhCCCCcceeeecccCc
Q 019165 60 PKEIVLKVYMHCEGCARKVRRCLKGFEGVEDVITDCKTH 98 (345)
Q Consensus 60 ~~~v~l~V~M~C~~Ca~kIe~~L~~l~GV~~v~vdl~~~ 98 (345)
+.++.|. ++|-+.++..+.+++||.++.+-...+
T Consensus 45 ~~~a~fa-----gGCFWg~E~~F~~l~GV~~t~vGYagG 78 (213)
T PRK00058 45 MEQAIFG-----MGCFWGAERLFWQLPGVYSTAVGYAGG 78 (213)
T ss_pred ccEEEEE-----ccCcchhHHHHhcCCCEEEEEeeecCC
Confidence 4555554 788888999999999999998887755
No 41
>PRK14054 methionine sulfoxide reductase A; Provisional
Probab=26.60 E-value=1.4e+02 Score=26.46 Aligned_cols=28 Identities=14% Similarity=0.200 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHhCCCCcceeeecccCce
Q 019165 72 EGCARKVRRCLKGFEGVEDVITDCKTHK 99 (345)
Q Consensus 72 ~~Ca~kIe~~L~~l~GV~~v~vdl~~~k 99 (345)
++|-+.++..+.+++||.++.+-...+.
T Consensus 10 gGCFWg~E~~f~~~~GV~~t~vGYagG~ 37 (172)
T PRK14054 10 GGCFWGMEAPFDRVKGVISTRVGYTGGH 37 (172)
T ss_pred cCChhhhHHHHccCCCEEEEEeeecCCC
Confidence 7888889999999999999988877664
No 42
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=23.68 E-value=1.4e+02 Score=25.93 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=30.5
Q ss_pred EEEEEEe-cccCcccHHHHHHHHhccCCeeeEeecCC-CCeEE
Q 019165 160 IIVVLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLK-NSQVT 200 (345)
Q Consensus 160 ~~v~l~V-gM~C~~Ca~kIek~L~kl~GV~~v~vdl~-~~~v~ 200 (345)
..+++.| --.|..|..-|...+.++ |+.++.|... ++++.
T Consensus 100 ~~~tm~Vdr~vC~~C~~~i~~~a~~l-Gl~~L~I~~~~sG~~~ 141 (146)
T PF14437_consen 100 RSMTMYVDRDVCGYCGGDIPSMAEKL-GLKSLTIHEPDSGKVY 141 (146)
T ss_pred CeEEEEECcccchHHHHHHHHHHHHc-CCCeEEEEecCCCcEE
Confidence 3578888 778999999988887776 8888777666 55443
No 43
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=23.15 E-value=7.3e+02 Score=28.30 Aligned_cols=123 Identities=12% Similarity=0.201 Sum_probs=68.1
Q ss_pred hHHHHHHHHHhCCCCcceeeecccCceEEe--e--ccCCChH----HHHHhhhccccccccccCCCCCCCchhhhhhhcc
Q 019165 73 GCARKVRRCLKGFEGVEDVITDCKTHKVIV--K--GEKADPL----KVLDRVQRKSHRQVELLSPIPKPTAAEEEKKAEE 144 (345)
Q Consensus 73 ~Ca~kIe~~L~~l~GV~~v~vdl~~~kv~V--~--~~~~d~~----~I~~~I~~~~G~~a~l~s~~p~~~~~~~~~~~~~ 144 (345)
.-...|++.|..++|+..+.-....+..+| . ... +++ ++.++|.+. .. .+-+...
T Consensus 61 ~Vt~piE~~l~~i~gi~~i~S~S~~G~s~itv~F~~~~-d~d~A~~~V~~kv~~~-~~--~LP~~~~------------- 123 (1009)
T COG0841 61 SVTQPIEQQLNGLDGLDYMSSTSSSGSSSITVTFELGT-DPDTAAVQVQNKIQQA-ES--RLPSGVQ------------- 123 (1009)
T ss_pred HHhHHHHHHHhcCCCccEEEEEEcCCcEEEEEEEeCCC-ChHHHHHHHHHHHHHH-Hh--cCCCccC-------------
Confidence 356779999999999988766655555433 2 222 444 455555432 11 1110000
Q ss_pred CCCCCCccCCCCCceEEEEEEe-c--cc----CcccHHHHHHHHhccCCeeeEeecCC-CCeEEEe--------ecCChH
Q 019165 145 KAPPKPEEKKEEPQVIIVVLKV-H--MH----CEGCSLEIKKRILRMEGVESAEPDLK-NSQVTVK--------GVFDPP 208 (345)
Q Consensus 145 ~~~~~~~~~~~~~~~~~v~l~V-g--M~----C~~Ca~kIek~L~kl~GV~~v~vdl~-~~~v~V~--------~~~~~~ 208 (345)
++.-...+......+.+.+ + +. -..-...|+..|.+++||.++++.-. ...++|. ..+++.
T Consensus 124 ---~p~v~~~~~~~~~i~~~al~s~~~~~~~l~~~~~~~l~~~L~~v~GV~~V~~~G~~~~~~rI~ldp~kLa~~gLt~~ 200 (1009)
T COG0841 124 ---QPGVTVEKSSSNPLLILALTSTTDSSSDLTDYAASNVRDELSRVPGVGSVQLFGAQEYAMRIWLDPAKLAAYGLTPS 200 (1009)
T ss_pred ---CCceEeccCCCceEEEEEEEcCCCChHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceeEEEEeCHHHHHHcCCCHH
Confidence 0000000011122234444 2 22 11235678999999999999998877 4455564 247888
Q ss_pred HHHHHHH
Q 019165 209 KLVDYVY 215 (345)
Q Consensus 209 ~L~~~I~ 215 (345)
++...|+
T Consensus 201 dV~~ai~ 207 (1009)
T COG0841 201 DVQSAIR 207 (1009)
T ss_pred HHHHHHH
Confidence 8999996
No 44
>PF13732 DUF4162: Domain of unknown function (DUF4162)
Probab=22.04 E-value=2.6e+02 Score=20.67 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=30.3
Q ss_pred HhccCCeeeEeecCCCCeEEE--eecCChHHHHHHHHHhcCCceEEeeCC
Q 019165 181 ILRMEGVESAEPDLKNSQVTV--KGVFDPPKLVDYVYKRTGKHAVIVKQE 228 (345)
Q Consensus 181 L~kl~GV~~v~vdl~~~~v~V--~~~~~~~~L~~~I~kk~G~~a~iv~~~ 228 (345)
|..++||.++...- .+.+.| ....+...|+..|. ..|+ +.-....
T Consensus 26 l~~~~~v~~v~~~~-~~~~~i~l~~~~~~~~ll~~l~-~~g~-I~~f~~~ 72 (84)
T PF13732_consen 26 LEELPGVESVEQDG-DGKLRIKLEDEETANELLQELI-EKGI-IRSFEEE 72 (84)
T ss_pred HhhCCCeEEEEEeC-CcEEEEEECCcccHHHHHHHHH-hCCC-eeEEEEc
Confidence 77889999887643 333444 45567788999996 6787 5544443
No 45
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=21.88 E-value=93 Score=27.64 Aligned_cols=34 Identities=15% Similarity=0.373 Sum_probs=23.5
Q ss_pred EEEEEEeeechhHH------HHHHHHHhCCCCcceeeecc
Q 019165 62 EIVLKVYMHCEGCA------RKVRRCLKGFEGVEDVITDC 95 (345)
Q Consensus 62 ~v~l~V~M~C~~Ca------~kIe~~L~~l~GV~~v~vdl 95 (345)
.+.|.+.++..+|. ..|+.+|..++||.+|.|++
T Consensus 114 ~V~I~mtLt~p~c~~~~~L~~dV~~aL~~l~gV~~V~V~l 153 (174)
T TIGR03406 114 RVDIEMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEVEVEL 153 (174)
T ss_pred EEEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCceeEEEEE
Confidence 34455555655555 34888899999999887764
No 46
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=21.44 E-value=3.1e+02 Score=19.97 Aligned_cols=53 Identities=21% Similarity=0.325 Sum_probs=37.4
Q ss_pred EEe-cccCcccHHHHHHHHhccCCeeeEeecCCCCeEEEe--ecCChHHHHHHHHHhcCCceEEee
Q 019165 164 LKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVK--GVFDPPKLVDYVYKRTGKHAVIVK 226 (345)
Q Consensus 164 l~V-gM~C~~Ca~kIek~L~kl~GV~~v~vdl~~~~v~V~--~~~~~~~L~~~I~kk~G~~a~iv~ 226 (345)
|.+ |+.|+.=.-.+.++|.++.. ++.+.|. ......+|....+ ..||....+.
T Consensus 2 lD~rG~~CP~Pvl~~kkal~~l~~---------G~~l~V~~d~~~a~~di~~~~~-~~G~~~~~~~ 57 (69)
T cd03420 2 VDACGLQCPGPILKLKKEIDKLQD---------GEQLEVKASDPGFARDAQAWCK-STGNTLISLE 57 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCC---------CCEEEEEECCccHHHHHHHHHH-HcCCEEEEEE
Confidence 456 89999999999999988852 1334443 3356677888885 7999876443
No 47
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=20.50 E-value=3.5e+02 Score=21.69 Aligned_cols=53 Identities=13% Similarity=0.096 Sum_probs=30.9
Q ss_pred EEEe-cccCcccHHHHHHHHhccCCeeeEeecCCCCeEEEe--ecCChHHHHHHHH
Q 019165 163 VLKV-HMHCEGCSLEIKKRILRMEGVESAEPDLKNSQVTVK--GVFDPPKLVDYVY 215 (345)
Q Consensus 163 ~l~V-gM~C~~Ca~kIek~L~kl~GV~~v~vdl~~~~v~V~--~~~~~~~L~~~I~ 215 (345)
.|+| |++-.-+...|+..|..+..|.-|.+..-.....|. ..-....++..+.
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHH
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHH
Confidence 5677 777777799999999999999888877766666665 3345677788775
No 48
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=20.12 E-value=1.9e+02 Score=26.05 Aligned_cols=58 Identities=14% Similarity=0.203 Sum_probs=0.0
Q ss_pred CCCCCCCcEEEEEEeeechhHHHHHHHHHhCCCCcceeeecccCce-------------------EEeeccC--CChHHH
Q 019165 54 EQSPPPPKEIVLKVYMHCEGCARKVRRCLKGFEGVEDVITDCKTHK-------------------VIVKGEK--ADPLKV 112 (345)
Q Consensus 54 ~~~~~~~~~v~l~V~M~C~~Ca~kIe~~L~~l~GV~~v~vdl~~~k-------------------v~V~~~~--~d~~~I 112 (345)
...+..+.++.|. ++|-+-++..+.+++||.++.+-...+. |.|..+. ++...|
T Consensus 2 ~~~~~~~~~a~~a-----gGCFWg~E~~f~~l~GV~~t~vGYagG~~~nPtY~~Vcsg~tgH~E~V~V~yDp~~iSy~~L 76 (186)
T PRK13014 2 DAAADGMETATFA-----GGCFWGVEGVFQHVPGVVSVVSGYSGGHVDNPTYEQVCTGTTGHAEAVQITYDPKQVSYENL 76 (186)
T ss_pred CCCCCCccEEEEe-----cCCceeeHHHHccCCCEEEEEeeecCCCCCCCChhhhcCCCCCceEEEEEEECCCcCCHHHH
Q ss_pred HHhh
Q 019165 113 LDRV 116 (345)
Q Consensus 113 ~~~I 116 (345)
++..
T Consensus 77 L~~F 80 (186)
T PRK13014 77 LQIF 80 (186)
T ss_pred HHHH
Done!