BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019166
(345 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W1V|A Chain A, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution
pdb|2W1V|B Chain B, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution
Length = 276
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 81/190 (42%), Gaps = 30/190 (15%)
Query: 30 VQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGK 89
+Q S+I D L +A L+ EAA G+ +V PE F Y G
Sbjct: 11 LQVSSIKSDN---LTRACSLVREAAKQGANIVSLPECFNSPY----------------GT 51
Query: 90 EEFRKYHASAIDVPGPEVERLAAMAGKYKVYLVMGVI-ERDGYTLYCTVLFFDSQGHFLG 148
F Y A +PG ++L+ +A + +YL+ G I E D LY T F G L
Sbjct: 52 TYFPDY---AEKIPGESTQKLSEVAKESSIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLV 108
Query: 149 KHRKIMPTALE---RIIWG----FGDGSTIPVFETPIGKIGAAICWENRMPLLRTAMYAK 201
KHRKI ++ +I + G + F+TP K+G IC++ R L +
Sbjct: 109 KHRKIHLFDIDVPGKITFQESKTLSPGDSFSTFDTPYCKVGLGICYDMRFAELAQIYAQR 168
Query: 202 GIEIYCAPTA 211
G ++ P A
Sbjct: 169 GCQLLVYPGA 178
>pdb|1J31|A Chain A, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|B Chain B, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|C Chain C, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|D Chain D, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
Length = 262
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 19/186 (10%)
Query: 25 VRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNR 84
V+ +Q + KAE+L+ EA+ G++LVV PE F GY NF
Sbjct: 2 VKVGYIQXEPKILELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGY----NF------- 50
Query: 85 TAKGKEEFRKYHASAIDVP-GPEVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQ 143
+ +EE A +P G L +A + +Y+V G E+ G LY + + +
Sbjct: 51 --ESREEV---FDVAQQIPEGETTTFLXELARELGLYIVAGTAEKSGNYLYNSAVVVGPR 105
Query: 144 GHFLGKHRKIMPTALERIIWGFGDGSTIPVFETPIGKIGAAICWENRMPLLRTAMYAKGI 203
G ++GK+RKI E++ + GD VF+ K+G IC++ P + KG
Sbjct: 106 G-YIGKYRKIHLFYREKVFFEPGDLG-FKVFDIGFAKVGVXICFDWFFPESARTLALKGA 163
Query: 204 EIYCAP 209
EI P
Sbjct: 164 EIIAHP 169
>pdb|3IVZ|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IVZ|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IW3|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IW3|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KI8|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KI8|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KLC|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KLC|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
Length = 262
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 92/214 (42%), Gaps = 19/214 (8%)
Query: 25 VRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNR 84
V+ VQ + + KAE+L+ EA+ G+QLVV PE F GY NF
Sbjct: 2 VKVAYVQMNPQILEPDKNYSKAEKLIKEASKQGAQLVVLPELFDTGY----NF------- 50
Query: 85 TAKGKEEFRKYHASAIDVP-GPEVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQ 143
E + A +P G L +A VY+V G E+DG LY + + +
Sbjct: 51 -----ETREEVFEIAQKIPEGETTTFLMDVARDTGVYIVAGTAEKDGDVLYNSAVVVGPR 105
Query: 144 GHFLGKHRKIMPTALERIIWGFGDGSTIPVFETPIGKIGAAICWENRMPLLRTAMYAKGI 203
G F+GK+RKI E+ + GD VF+ K+G I ++ P + KG
Sbjct: 106 G-FIGKYRKIHLFYREKFFFEPGDLG-FRVFDLGFMKVGVMIXFDWFFPESARTLALKGA 163
Query: 204 EIYCAPTADSREVWQASMTHIALEGGCFVLSANQ 237
++ P +M ALE + ++A++
Sbjct: 164 DVIAHPANLVMPYAPRAMPIRALENKVYTVTADR 197
>pdb|1F89|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nit3, A
Member Of Branch 10 Of The Nitrilase Superfamily
pdb|1F89|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Nit3, A
Member Of Branch 10 Of The Nitrilase Superfamily
Length = 291
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 89/205 (43%), Gaps = 39/205 (19%)
Query: 25 VRATVVQASTIFYDTPATLGKA----ERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVT 80
++ +VQ S D A L +A ER + E ++LVV PE F Y
Sbjct: 11 IKVALVQLSGSSPDKMANLQRAATFIERAMKEQPD--TKLVVLPECFNSPY--------- 59
Query: 81 IGNRTAKGKEEFRKYHASAID--VPGPEVERLAAMAGKYKVYLVMGVI-ERDGYT--LYC 135
++FRKY + I+ P V+ L+ +A K+K+ LV G I E D T +Y
Sbjct: 60 -------STDQFRKY-SEVINPKEPSTSVQFLSNLANKFKIILVGGTIPELDPKTDKIYN 111
Query: 136 TVLFFDSQGHFLGKHRKI------MPTAL---ERIIWGFGDGSTIPVFETPIGKIGAAIC 186
T + F+ G + KHRK+ +P + E G+ ST +T GK G IC
Sbjct: 112 TSIIFNEDGKLIDKHRKVHLFDVDIPNGISFHESETLSPGEKST--TIDTKYGKFGVGIC 169
Query: 187 WENRMPLLRTAMYAKGIEIYCAPTA 211
++ R P L KG P+A
Sbjct: 170 YDMRFPELAMLSARKGAFAMIYPSA 194
>pdb|2DYU|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-tuned
Cysteine- Glutamate-lysine Catalytic Triad
pdb|2DYU|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-tuned
Cysteine- Glutamate-lysine Catalytic Triad
pdb|2DYV|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2DYV|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
Length = 334
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 89/199 (44%), Gaps = 33/199 (16%)
Query: 49 LLAEAAGY-GSQLVVFPEAFIGGYPRGANFGVTIGNRTAKG-KEEFRKYHASAIDVPGPE 106
L A AGY G +L++FPE T G TAK EEF +DVPG E
Sbjct: 43 LHATKAGYPGVELIIFPEY------------STQGLNTAKWLSEEF------LLDVPGKE 84
Query: 107 VERLAAMAGKYKVYLVMGVIERD---GYTLYCTVLFFDSQGHFLGKHRKIMP-TALERII 162
E A + KVY V ++ER+ Y T + D QG + K+RK+ P +E
Sbjct: 85 TELYAKACKEAKVYGVFSIMERNPDSNKNPYNTAIIIDPQGEIILKYRKLFPWNPIEP-- 142
Query: 163 WGFGDGSTIPVFETPIG-KIGAAICWENRMP-LLRTAMYAKGIEIYCAPTADSREV---W 217
W GD +PV E P G K+ IC + +P L R A Y KG +Y + S +V W
Sbjct: 143 WYPGD-LGMPVCEGPGGSKLAVCICHDGMIPELAREAAY-KGCNVYIRISGYSTQVNDQW 200
Query: 218 QASMTHIALEGGCFVLSAN 236
+ A + +S N
Sbjct: 201 ILTNRSNAWHNLMYTVSVN 219
>pdb|2VHH|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHH|B Chain B, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHH|C Chain C, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHH|D Chain D, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|A Chain A, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|B Chain B, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|C Chain C, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|D Chain D, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|E Chain E, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|F Chain F, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|G Chain G, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
pdb|2VHI|H Chain H, Crystal Structure Of A Pyrimidine Degrading Enzyme From
Drosophila Melanogaster
Length = 405
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 63/144 (43%), Gaps = 10/144 (6%)
Query: 104 GPEVERLAAMAGKYKVYLVMGVIERD---GYTLYCTVLFFDSQGHFLGKHRKI-MPTA-- 157
GP + LA +A Y + ++ ++ERD G T++ T + + G +LGKHRK +P
Sbjct: 146 GPTTKMLAELAKAYNMVIIHSILERDMEHGETIWNTAVVISNSGRYLGKHRKNHIPRVGD 205
Query: 158 LERIIWGFGDGSTIPVFETPIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTAD----S 213
+ + PVFET GK+ IC+ P G EI P+A S
Sbjct: 206 FNESTYYMEGNTGHPVFETEFGKLAVNICYGRHHPQNWMMFGLNGAEIVFNPSATIGRLS 265
Query: 214 REVWQASMTHIALEGGCFVLSANQ 237
+W + A+ F + N+
Sbjct: 266 EPLWSIEARNAAIANSYFTVPINR 289
>pdb|2E2K|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|C Chain C, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|D Chain D, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|E Chain E, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2K|F Chain F, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|A Chain A, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|B Chain B, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|C Chain C, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|D Chain D, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|E Chain E, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
pdb|2E2L|F Chain F, Helicobacter Pylori Formamidase Amif Contains A Fine-Tuned
Cysteine- Glutamate-Lysine Catalytic Triad
Length = 334
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 88/199 (44%), Gaps = 33/199 (16%)
Query: 49 LLAEAAGY-GSQLVVFPEAFIGGYPRGANFGVTIGNRTAKG-KEEFRKYHASAIDVPGPE 106
L A AGY G +L++FPE T G TAK EEF +DVPG E
Sbjct: 43 LHATKAGYPGVELIIFPEY------------STQGLNTAKWLSEEF------LLDVPGKE 84
Query: 107 VERLAAMAGKYKVYLVMGVIERD---GYTLYCTVLFFDSQGHFLGKHRKIMP-TALERII 162
E A + KVY V ++ER+ Y T + D QG + K+RK+ P +E
Sbjct: 85 TELYAKACKEAKVYGVFSIMERNPDSNKNPYNTAIIIDPQGEIILKYRKLFPWNPIEP-- 142
Query: 163 WGFGDGSTIPVFETPIG-KIGAAICWENRMP-LLRTAMYAKGIEIYCAPTADSREV---W 217
W GD +PV E P G K+ I + +P L R A Y KG +Y + S +V W
Sbjct: 143 WYPGD-LGMPVCEGPGGSKLAVCISHDGMIPELAREAAY-KGCNVYIRISGYSTQVNDQW 200
Query: 218 QASMTHIALEGGCFVLSAN 236
+ A + +S N
Sbjct: 201 ILTNRSNAWHNLMYTVSVN 219
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein
pdb|1EMS|B Chain B, Crystal Structure Of The C. Elegans Nitfhit Protein
Length = 440
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 16/147 (10%)
Query: 107 VERLAAMAGKYKVYLVMGVIER----DGYTLYCTVLFFDSQGHFLGKHRKI------MPT 156
+E+ +A K+ ++L +G + D + T L DS G ++ K+ +P
Sbjct: 78 MEKYRELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPG 137
Query: 157 ALERIIWGFGDGST--IPVFETPIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADSR 214
+ + F T IP +TPIG++G +IC++ R P L +G ++ P+A +
Sbjct: 138 KVRLMESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPELSLWNRKRGAQLLSFPSAFTL 197
Query: 215 EV----WQASMTHIALEGGCFVLSANQ 237
W+ + A+E C+V++A Q
Sbjct: 198 NTGLAHWETLLRARAIENQCYVVAAAQ 224
>pdb|1FO6|A Chain A, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|B Chain B, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|C Chain C, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|D Chain D, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
Length = 304
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 88/236 (37%), Gaps = 57/236 (24%)
Query: 42 TLGKAERLLAEAAGYGSQLVVFPE-AFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAI 100
+G+ +L AA G +VFPE A +PR + E ++ +
Sbjct: 24 VVGRLLDMLTNAASRGVNFIVFPELALTTFFPRWH----------FTDEAELDSFYET-- 71
Query: 101 DVPGPEVERLAAMAGKYKVYLVMG----VIERDGYTLYCTVLFFDSQGHFLGKHRKI-MP 155
++PGP V L A + + +G V+E + T + D G +GK+RKI +P
Sbjct: 72 EMPGPVVRPLFETAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLP 131
Query: 156 -----------TALERIIWGFGDGSTIPVFETPIGKIGAAICWENRMPLLRTAMYAKGIE 204
LE+ + GD PV++ K+G IC + R P M KG E
Sbjct: 132 GHKEYEAYRPFQHLEKRYFEPGD-LGFPVYDVDAAKMGMFICNDRRWPETWRVMGLKGAE 190
Query: 205 IYCA----PTAD-----------------------SREVWQASMTHIALEGGCFVL 233
I C PT + W A+ + +E GC +L
Sbjct: 191 IICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGAWSAAAGKVGMEEGCMLL 246
>pdb|2GGL|A Chain A, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|B Chain B, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|C Chain C, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|D Chain D, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
Length = 304
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 88/236 (37%), Gaps = 57/236 (24%)
Query: 42 TLGKAERLLAEAAGYGSQLVVFPE-AFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAI 100
+G+ +L AA G +VFPE A +PR + E ++ +
Sbjct: 24 VVGRLLDMLTNAASRGVNFIVFPELALTTFFPRWH----------FTDEAELDSFYET-- 71
Query: 101 DVPGPEVERLAAMAGKYKVYLVMG----VIERDGYTLYCTVLFFDSQGHFLGKHRKI-MP 155
++PGP V L A + + +G V+E + T + D G +GK+RKI +P
Sbjct: 72 EMPGPVVRPLFETAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLP 131
Query: 156 -----------TALERIIWGFGDGSTIPVFETPIGKIGAAICWENRMPLLRTAMYAKGIE 204
LE+ + GD PV++ K+G IC + R P M KG E
Sbjct: 132 GHKEYEAYRPFQHLEKRYFEPGDLG-FPVYDVDAAKMGMFICNDRRWPETWRVMGLKGAE 190
Query: 205 IYCA----PTAD-----------------------SREVWQASMTHIALEGGCFVL 233
I C PT + W A+ + +E GC +L
Sbjct: 191 IICGGYNTPTHNPPVPQHDHLTSFHHLLSMQCGSYQNGAWSAAAGKVGMEEGCMLL 246
>pdb|2GGK|A Chain A, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|B Chain B, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|C Chain C, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|D Chain D, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
Length = 304
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 88/236 (37%), Gaps = 57/236 (24%)
Query: 42 TLGKAERLLAEAAGYGSQLVVFPE-AFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAI 100
+G+ +L AA G +VFPE A +PR + E ++ +
Sbjct: 24 VVGRLLDMLTNAASRGVNFIVFPELALTTFFPRWH----------FTDEAELDSFYET-- 71
Query: 101 DVPGPEVERLAAMAGKYKVYLVMG----VIERDGYTLYCTVLFFDSQGHFLGKHRKI-MP 155
++PGP V L A + + +G V+E + T + D G +GK+RKI +P
Sbjct: 72 EMPGPVVRPLFETAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLP 131
Query: 156 -----------TALERIIWGFGDGSTIPVFETPIGKIGAAICWENRMPLLRTAMYAKGIE 204
LE+ + GD PV++ K+G IC + R P M KG E
Sbjct: 132 GHKEYEAYRPFQHLEKRYFEPGDLG-FPVYDVDAAKMGMFICNDRRWPETWRVMGLKGAE 190
Query: 205 IYCA----PTAD-----------------------SREVWQASMTHIALEGGCFVL 233
I C PT + W A+ + +E GC +L
Sbjct: 191 IICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGAWSAAAGKVGMEEGCMLL 246
>pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
pdb|1ERZ|B Chain B, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
Length = 303
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 30/176 (17%)
Query: 49 LLAEAAGYGSQLVVFPE-AFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEV 107
+L +AA G+ +VFPE A +PR + E ++ + ++PGP V
Sbjct: 30 MLTKAASRGANFIVFPELALTTFFPRWH----------FTDEAELDSFYET--EMPGPVV 77
Query: 108 ERLAAMAGKYKVYLVMG----VIERDGYTLYCTVLFFDSQGHFLGKHRKI-MP------- 155
L A + + +G V+E + T + D G +GK+RKI +P
Sbjct: 78 RPLFEKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEA 137
Query: 156 ----TALERIIWGFGDGSTIPVFETPIGKIGAAICWENRMPLLRTAMYAKGIEIYC 207
LE+ + GD PV++ K+G IC + R P M +G EI C
Sbjct: 138 YRPFQHLEKRYFEPGDLG-FPVYDVDAAKMGMFICNDRRWPEAWRVMGLRGAEIIC 192
>pdb|1UF4|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase
pdb|1UF4|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase
pdb|1UF5|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Methionine
pdb|1UF5|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Methionine
pdb|1UF7|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Valine
pdb|1UF7|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Valine
pdb|1UF8|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Phenylalanine
pdb|1UF8|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Phenylalanine
Length = 303
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 30/176 (17%)
Query: 49 LLAEAAGYGSQLVVFPE-AFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEV 107
+L +AA G+ +VFPE A +PR + E ++ + ++PGP V
Sbjct: 30 MLTKAASRGANFIVFPELALTTFFPRW----------HFTDEAELDSFYET--EMPGPVV 77
Query: 108 ERLAAMAGKYKVYLVMG----VIERDGYTLYCTVLFFDSQGHFLGKHRKI-MP------- 155
L A + + +G V+E + T + D G +GK+RKI +P
Sbjct: 78 RPLFEKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEA 137
Query: 156 ----TALERIIWGFGDGSTIPVFETPIGKIGAAICWENRMPLLRTAMYAKGIEIYC 207
LE+ + GD PV++ K+G I + R P M +G EI C
Sbjct: 138 YRPFQHLEKRYFEPGDLG-FPVYDVDAAKMGMFIANDRRWPEAWRVMGLRGAEIIC 192
>pdb|2UXY|A Chain A, Aliphatic Amidase
Length = 341
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 61/151 (40%), Gaps = 18/151 (11%)
Query: 98 SAIDVPGPEVERLAAMAGKYKVYLVMGVI-----ERDGYTLYCTVLFFDSQGHFLGKHRK 152
+A+ +PG E E + K V+ V + E Y T++ D+ G + K+RK
Sbjct: 75 TAVAIPGEETEIFSRACRKANVWGVFSLTGERHEEHPRKAPYNTLVLIDNNGEIVQKYRK 134
Query: 153 IMPTALERIIWGFGDGSTIPVFETPIG-KIGAAICWENRMPLLRTAMYAKGIEI------ 205
I+P I G+ G V E P G KI I + P + KG E+
Sbjct: 135 IIPWCP---IEGWYPGGQTYVSEGPKGMKISLIIXDDGNYPEIWRDCAMKGAELIVRCQG 191
Query: 206 YCAPTADSREVWQASMTHIALEGGCFVLSAN 236
Y P D + + +M A C+V AN
Sbjct: 192 YMYPAKDQQVMMAKAM---AWANNCYVAVAN 219
>pdb|2PLQ|A Chain A, Crystal Structure Of The Amidase From Geobacillus Pallidus
Rapc8
Length = 348
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 9/115 (7%)
Query: 97 ASAIDVPGPEVERLAAMAGK---YKVYLVMGVIERD--GYTLYCTVLFFDSQGHFLGKHR 151
A+A +PG E A K + V+ + G D Y T++ +++G + K+R
Sbjct: 74 ATAASIPGEETAIFAEACKKADTWGVFSLTGEKHEDHPNKAPYNTLVLINNKGEIVQKYR 133
Query: 152 KIMPTALERIIWGFGDGSTIPVFETPIG-KIGAAICWENRMPLLRTAMYAKGIEI 205
KI+P I G+ G T V E P G KI +C + P + KG E+
Sbjct: 134 KIIPWCP---IEGWYPGDTTYVTEGPKGLKISLIVCDDGNYPEIWRDCAMKGAEL 185
>pdb|2E11|A Chain A, The Crystal Structure Of Xc1258 From Xanthomonas
Campestris: A Cn- Hydrolase Superfamily Protein With An
Arsenic Adduct In The Active Site
pdb|2E11|B Chain B, The Crystal Structure Of Xc1258 From Xanthomonas
Campestris: A Cn- Hydrolase Superfamily Protein With An
Arsenic Adduct In The Active Site
pdb|2E11|C Chain C, The Crystal Structure Of Xc1258 From Xanthomonas
Campestris: A Cn- Hydrolase Superfamily Protein With An
Arsenic Adduct In The Active Site
pdb|2E11|D Chain D, The Crystal Structure Of Xc1258 From Xanthomonas
Campestris: A Cn- Hydrolase Superfamily Protein With An
Arsenic Adduct In The Active Site
Length = 266
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 84/224 (37%), Gaps = 35/224 (15%)
Query: 25 VRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNR 84
+R ++VQ ST ++D LL AG S LV+ PE F G+ +
Sbjct: 4 LRISLVQGSTRWHDPAGNRDYYGALLEPLAGQ-SDLVILPETFTSGF-----------SN 51
Query: 85 TAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQG 144
A K E D+ GP V + A + + V R + ++ +L+ G
Sbjct: 52 EAIDKAE---------DMDGPTVAWIRTQAARLGAAITGSVQLRTEHGVFNRLLWATPDG 102
Query: 145 --HFLGKHRKIMPTALERIIWGFGDGSTIPVFETPIGKIGAAICWENRMPLL-------- 194
+ K R + E + + G E +I +C++ R P+
Sbjct: 103 ALQYYDK-RHLFRFGNEHL--RYAAGRERLCVEWKGWRINPQVCYDLRFPVFCRNRFDVE 159
Query: 195 RTAMYAKGIEIYCAPTADSRE-VWQASMTHIALEGGCFVLSANQ 237
R ++++ A +R W+ + A+E CFV + N+
Sbjct: 160 RPGQLDFDLQLFVANWPSARAYAWKTLLRARAIENLCFVAAVNR 203
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,513,432
Number of Sequences: 62578
Number of extensions: 442348
Number of successful extensions: 718
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 683
Number of HSP's gapped (non-prelim): 17
length of query: 345
length of database: 14,973,337
effective HSP length: 100
effective length of query: 245
effective length of database: 8,715,537
effective search space: 2135306565
effective search space used: 2135306565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)