Query 019166
Match_columns 345
No_of_seqs 159 out of 1500
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 07:14:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019166.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019166hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02504 nitrilase 100.0 7.8E-60 1.7E-64 450.3 34.5 330 13-342 13-342 (346)
2 KOG0805 Carbon-nitrogen hydrol 100.0 2.5E-55 5.5E-60 381.8 29.2 328 15-342 8-335 (337)
3 cd07564 nitrilases_CHs Nitrila 100.0 6.4E-54 1.4E-58 403.0 29.4 291 25-325 1-297 (297)
4 cd07587 ML_beta-AS mammalian-l 100.0 1.7E-51 3.8E-56 394.7 26.6 282 22-323 61-361 (363)
5 TIGR03381 agmatine_aguB N-carb 100.0 8.3E-51 1.8E-55 378.2 26.1 262 25-321 1-278 (279)
6 PLN00202 beta-ureidopropionase 100.0 1.2E-49 2.7E-54 385.9 26.5 282 22-325 84-384 (405)
7 cd07576 R-amidase_like Pseudom 100.0 4.7E-49 1E-53 361.5 25.5 250 26-317 1-254 (254)
8 PRK10438 C-N hydrolase family 100.0 7.6E-49 1.6E-53 361.1 26.6 247 24-319 3-255 (256)
9 cd07568 ML_beta-AS_like mammal 100.0 5.4E-49 1.2E-53 367.7 25.5 267 23-323 2-285 (287)
10 cd07579 nitrilase_1_R2 Second 100.0 3.5E-49 7.6E-54 367.5 23.7 228 26-302 1-255 (279)
11 cd07580 nitrilase_2 Uncharacte 100.0 1.3E-48 2.9E-53 361.7 26.6 255 26-319 1-268 (268)
12 cd07565 aliphatic_amidase alip 100.0 2.1E-48 4.6E-53 364.2 27.2 261 25-330 1-275 (291)
13 PLN02747 N-carbamolyputrescine 100.0 2E-48 4.3E-53 365.6 25.5 275 21-326 3-293 (296)
14 cd07584 nitrilase_6 Uncharacte 100.0 4.1E-48 8.8E-53 356.3 26.5 250 26-312 1-255 (258)
15 cd07569 DCase N-carbamyl-D-ami 100.0 4.1E-48 8.9E-53 364.4 26.4 266 24-323 3-301 (302)
16 cd07577 Ph0642_like Pyrococcus 100.0 3.6E-48 7.9E-53 357.0 25.5 255 26-319 1-259 (259)
17 cd07583 nitrilase_5 Uncharacte 100.0 7.4E-48 1.6E-52 353.6 26.7 247 26-315 1-253 (253)
18 cd07573 CPA N-carbamoylputresc 100.0 5E-48 1.1E-52 360.6 25.6 264 25-323 1-283 (284)
19 cd07585 nitrilase_7 Uncharacte 100.0 1.5E-47 3.2E-52 353.2 26.8 252 26-319 1-261 (261)
20 PLN02798 nitrilase 100.0 2.1E-47 4.5E-52 357.0 26.9 259 19-319 5-282 (286)
21 cd07578 nitrilase_1_R1 First n 100.0 6.5E-47 1.4E-51 348.5 26.2 253 25-318 1-258 (258)
22 cd07574 nitrilase_Rim1_like Un 100.0 9.7E-47 2.1E-51 351.3 24.8 267 25-318 1-280 (280)
23 cd07586 nitrilase_8 Uncharacte 100.0 1.6E-46 3.5E-51 347.7 23.9 251 26-320 1-266 (269)
24 cd07572 nit Nit1, Nit 2, and r 100.0 1E-45 2.2E-50 341.4 26.3 246 26-311 1-262 (265)
25 COG0388 Predicted amidohydrola 100.0 1.7E-45 3.7E-50 342.0 27.7 260 24-322 2-271 (274)
26 PRK13286 amiE acylamide amidoh 100.0 1.7E-45 3.7E-50 350.6 26.9 262 21-322 9-287 (345)
27 cd07581 nitrilase_3 Uncharacte 100.0 2.6E-45 5.6E-50 337.0 26.6 241 27-312 1-253 (255)
28 PRK13287 amiF formamidase; Pro 100.0 3.6E-45 7.9E-50 347.6 28.2 259 21-324 10-281 (333)
29 cd07567 biotinidase_like bioti 100.0 4.8E-46 1E-50 348.0 21.6 249 25-301 1-279 (299)
30 cd07582 nitrilase_4 Uncharacte 100.0 3.4E-45 7.3E-50 343.4 27.1 255 26-309 2-285 (294)
31 KOG0807 Carbon-nitrogen hydrol 100.0 1.8E-46 3.8E-51 325.7 15.0 257 25-322 16-291 (295)
32 cd07575 Xc-1258_like Xanthomon 100.0 5.5E-45 1.2E-49 334.6 25.9 242 25-312 1-247 (252)
33 cd07570 GAT_Gln-NAD-synth Glut 100.0 7.8E-45 1.7E-49 335.0 20.0 243 26-310 1-253 (261)
34 cd07197 nitrilase Nitrilase su 100.0 2.2E-43 4.7E-48 322.9 26.6 242 27-307 1-246 (253)
35 cd07571 ALP_N-acyl_transferase 100.0 2E-41 4.3E-46 314.1 19.9 216 25-299 1-251 (270)
36 PRK13981 NAD synthetase; Provi 100.0 2E-40 4.3E-45 334.9 23.5 232 25-299 1-243 (540)
37 PRK02628 nadE NAD synthetase; 100.0 1.7E-39 3.7E-44 334.5 25.6 256 22-315 10-295 (679)
38 cd07566 ScNTA1_like Saccharomy 100.0 6.8E-39 1.5E-43 300.0 23.3 214 26-274 1-265 (295)
39 PLN02339 NAD+ synthase (glutam 100.0 1.2E-38 2.7E-43 327.6 23.7 250 24-312 3-289 (700)
40 KOG0806 Carbon-nitrogen hydrol 100.0 4.5E-39 9.8E-44 292.3 15.6 267 22-324 11-296 (298)
41 PRK00302 lnt apolipoprotein N- 100.0 5E-34 1.1E-38 286.4 17.8 216 23-298 218-470 (505)
42 TIGR00546 lnt apolipoprotein N 100.0 6.9E-34 1.5E-38 276.9 16.1 199 22-279 157-391 (391)
43 PF00795 CN_hydrolase: Carbon- 100.0 4.9E-32 1.1E-36 236.9 16.4 174 26-211 1-186 (186)
44 KOG0808 Carbon-nitrogen hydrol 100.0 9.2E-31 2E-35 230.0 17.3 283 24-326 73-374 (387)
45 PRK12291 apolipoprotein N-acyl 100.0 7.6E-28 1.7E-32 235.1 18.1 178 25-240 195-405 (418)
46 COG0815 Lnt Apolipoprotein N-a 99.9 3.8E-25 8.1E-30 220.3 19.2 223 20-299 223-482 (518)
47 PRK13825 conjugal transfer pro 99.9 4.1E-22 8.9E-27 192.4 15.5 178 25-237 186-387 (388)
48 KOG2303 Predicted NAD synthase 99.7 1.8E-17 4E-22 157.7 9.6 243 23-306 3-284 (706)
49 cd07565 aliphatic_amidase alip 82.9 8.6 0.00019 35.9 9.2 70 49-149 161-232 (291)
50 cd07576 R-amidase_like Pseudom 77.6 15 0.00032 33.1 8.7 41 108-148 178-220 (254)
51 cd07584 nitrilase_6 Uncharacte 71.4 24 0.00052 31.9 8.4 39 110-148 184-224 (258)
52 PRK13286 amiE acylamide amidoh 71.3 27 0.00059 33.5 9.0 42 108-149 202-245 (345)
53 cd07585 nitrilase_7 Uncharacte 70.7 24 0.00052 31.9 8.3 41 109-149 181-223 (261)
54 cd07580 nitrilase_2 Uncharacte 69.5 46 0.001 30.2 9.9 39 110-148 188-228 (268)
55 cd07586 nitrilase_8 Uncharacte 68.4 27 0.00059 31.7 8.2 43 107-149 185-229 (269)
56 cd07583 nitrilase_5 Uncharacte 65.4 25 0.00055 31.6 7.2 40 110-149 181-222 (253)
57 cd07572 nit Nit1, Nit 2, and r 65.4 20 0.00044 32.4 6.7 38 110-147 192-232 (265)
58 PRK09856 fructoselysine 3-epim 64.6 39 0.00084 30.8 8.4 63 39-123 85-147 (275)
59 cd07197 nitrilase Nitrilase su 64.6 31 0.00067 30.8 7.6 67 51-148 153-221 (253)
60 COG1504 Uncharacterized conser 64.2 22 0.00047 28.2 5.4 90 123-222 9-109 (121)
61 TIGR03381 agmatine_aguB N-carb 63.4 52 0.0011 30.0 9.0 42 108-149 193-240 (279)
62 cd07567 biotinidase_like bioti 63.0 29 0.00063 32.6 7.3 42 108-150 218-260 (299)
63 cd07570 GAT_Gln-NAD-synth Glut 60.5 29 0.00064 31.3 6.8 42 108-149 184-227 (261)
64 cd07577 Ph0642_like Pyrococcus 60.1 48 0.001 29.9 8.1 40 110-149 176-221 (259)
65 cd07568 ML_beta-AS_like mammal 59.7 57 0.0012 30.0 8.6 39 111-149 202-245 (287)
66 PRK13210 putative L-xylulose 5 58.2 58 0.0013 29.7 8.4 63 39-123 89-151 (284)
67 PF09587 PGA_cap: Bacterial ca 56.7 62 0.0013 29.3 8.2 76 43-147 170-247 (250)
68 cd07578 nitrilase_1_R1 First n 56.1 59 0.0013 29.3 8.0 37 112-148 184-222 (258)
69 PRK15018 1-acyl-sn-glycerol-3- 54.6 37 0.00081 30.9 6.3 33 37-69 119-151 (245)
70 cd07587 ML_beta-AS mammalian-l 53.8 52 0.0011 31.8 7.5 39 109-147 263-319 (363)
71 cd07573 CPA N-carbamoylputresc 52.7 92 0.002 28.4 8.8 43 107-149 195-243 (284)
72 TIGR00542 hxl6Piso_put hexulos 52.5 86 0.0019 28.7 8.5 63 40-124 90-152 (279)
73 PLN02798 nitrilase 52.1 62 0.0013 29.9 7.5 40 110-149 203-245 (286)
74 PLN02747 N-carbamolyputrescine 51.2 1E+02 0.0022 28.5 8.9 76 49-149 164-250 (296)
75 PF02630 SCO1-SenC: SCO1/SenC; 51.0 61 0.0013 27.7 6.8 45 107-151 124-172 (174)
76 cd07582 nitrilase_4 Uncharacte 50.8 96 0.0021 28.7 8.6 41 109-149 211-257 (294)
77 KOG2733 Uncharacterized membra 50.5 19 0.00042 34.7 3.7 63 183-250 66-155 (423)
78 cd07581 nitrilase_3 Uncharacte 50.1 73 0.0016 28.5 7.6 40 108-149 185-224 (255)
79 COG0388 Predicted amidohydrola 50.1 78 0.0017 28.9 7.8 66 54-149 163-231 (274)
80 COG2089 SpsE Sialic acid synth 49.2 70 0.0015 30.5 7.1 82 38-124 24-109 (347)
81 PRK13209 L-xylulose 5-phosphat 48.8 95 0.0021 28.4 8.2 63 39-123 94-156 (283)
82 PF01261 AP_endonuc_2: Xylose 48.5 88 0.0019 26.6 7.6 63 40-123 67-130 (213)
83 TIGR00530 AGP_acyltrn 1-acyl-s 48.0 59 0.0013 25.5 5.9 27 43-69 75-101 (130)
84 PF13788 DUF4180: Domain of un 47.3 79 0.0017 25.3 6.2 43 24-69 5-47 (113)
85 PRK10438 C-N hydrolase family 47.3 73 0.0016 28.9 7.1 41 109-149 176-219 (256)
86 PRK13981 NAD synthetase; Provi 47.0 73 0.0016 32.5 7.7 42 108-149 183-226 (540)
87 PF01553 Acyltransferase: Acyl 44.1 47 0.001 26.1 4.8 27 43-69 77-103 (132)
88 smart00481 POLIIIAc DNA polyme 43.5 63 0.0014 22.5 4.8 23 45-67 16-38 (67)
89 PRK13287 amiF formamidase; Pro 42.6 1.7E+02 0.0037 27.8 9.1 39 111-149 204-244 (333)
90 cd07564 nitrilases_CHs Nitrila 42.3 92 0.002 28.9 7.1 41 108-148 196-253 (297)
91 cd07579 nitrilase_1_R2 Second 42.2 80 0.0017 29.1 6.6 39 109-147 192-230 (279)
92 TIGR03569 NeuB_NnaB N-acetylne 41.5 62 0.0014 30.9 5.8 83 38-126 10-97 (329)
93 PLN02504 nitrilase 40.7 1.1E+02 0.0024 29.3 7.5 39 109-147 220-280 (346)
94 PLN00202 beta-ureidopropionase 40.6 1.2E+02 0.0026 29.9 7.7 39 109-147 284-340 (405)
95 cd07571 ALP_N-acyl_transferase 40.6 52 0.0011 30.2 5.0 67 195-281 32-104 (270)
96 PRK09437 bcp thioredoxin-depen 39.9 1.6E+02 0.0034 24.1 7.5 26 39-64 46-71 (154)
97 KOG0807 Carbon-nitrogen hydrol 38.8 77 0.0017 28.9 5.5 73 193-283 38-126 (295)
98 cd07569 DCase N-carbamyl-D-ami 38.2 1.7E+02 0.0037 27.1 8.3 39 111-149 220-260 (302)
99 cd00019 AP2Ec AP endonuclease 38.0 1.5E+02 0.0033 27.0 7.8 26 39-64 80-105 (279)
100 PF00795 CN_hydrolase: Carbon- 37.2 42 0.00092 28.3 3.7 65 194-280 26-113 (186)
101 cd07566 ScNTA1_like Saccharomy 37.0 72 0.0016 29.8 5.4 62 201-281 35-115 (295)
102 COG2100 Predicted Fe-S oxidore 35.2 78 0.0017 30.3 5.1 32 40-72 238-269 (414)
103 PF08821 CGGC: CGGC domain; I 35.1 1.3E+02 0.0028 23.7 5.8 55 43-125 51-106 (107)
104 cd02971 PRX_family Peroxiredox 34.7 1.9E+02 0.0041 22.8 7.0 24 132-155 108-131 (140)
105 COG1120 FepC ABC-type cobalami 34.2 97 0.0021 28.5 5.6 74 46-148 145-219 (258)
106 cd07990 LPLAT_LCLAT1-like Lyso 31.9 91 0.002 26.8 4.9 27 41-67 86-114 (193)
107 KOG0806 Carbon-nitrogen hydrol 30.6 41 0.00088 31.6 2.5 82 128-209 122-223 (298)
108 cd07988 LPLAT_ABO13168-like Ly 29.6 1.2E+02 0.0026 25.5 5.1 26 42-69 82-107 (163)
109 PF09587 PGA_cap: Bacterial ca 28.8 1.8E+02 0.0039 26.2 6.5 40 201-240 182-227 (250)
110 PF10087 DUF2325: Uncharacteri 28.8 54 0.0012 25.0 2.6 41 200-240 46-86 (97)
111 PRK09997 hydroxypyruvate isome 28.2 2.4E+02 0.0051 25.4 7.2 62 39-123 80-142 (258)
112 cd07986 LPLAT_ACT14924-like Ly 27.6 1.4E+02 0.003 26.1 5.4 28 41-69 83-110 (210)
113 KOG2792 Putative cytochrome C 27.2 80 0.0017 29.1 3.7 48 106-153 211-261 (280)
114 PF13342 Toprim_Crpt: C-termin 27.2 1.2E+02 0.0026 21.3 3.9 41 107-148 18-58 (62)
115 cd07491 Peptidases_S8_7 Peptid 27.1 3.9E+02 0.0085 24.1 8.4 26 41-66 86-111 (247)
116 COG3490 Uncharacterized protei 26.8 91 0.002 29.3 4.0 93 172-284 40-132 (366)
117 TIGR00674 dapA dihydrodipicoli 26.7 1.3E+02 0.0028 27.8 5.3 26 41-66 77-103 (285)
118 smart00563 PlsC Phosphate acyl 26.0 89 0.0019 23.6 3.5 28 41-69 60-87 (118)
119 cd00950 DHDPS Dihydrodipicolin 25.6 1.3E+02 0.0029 27.6 5.2 26 41-66 79-105 (284)
120 cd01821 Rhamnogalacturan_acety 24.7 3.1E+02 0.0068 23.2 7.1 63 38-122 88-150 (198)
121 PF01784 NIF3: NIF3 (NGG1p int 24.3 1.5E+02 0.0032 26.8 5.1 53 182-235 34-94 (241)
122 KOG1099 SAM-dependent methyltr 24.1 1.3E+02 0.0028 27.5 4.4 45 3-63 77-121 (294)
123 COG1225 Bcp Peroxiredoxin [Pos 23.6 1.1E+02 0.0024 25.9 3.7 23 133-155 119-141 (157)
124 cd00952 CHBPH_aldolase Trans-o 23.6 1.7E+02 0.0036 27.6 5.4 26 41-66 87-113 (309)
125 cd06551 LPLAT Lysophospholipid 23.5 4.1E+02 0.009 22.0 7.6 57 44-129 88-145 (187)
126 PTZ00261 acyltransferase; Prov 23.2 2.1E+02 0.0046 27.7 5.9 28 42-69 200-227 (355)
127 smart00854 PGA_cap Bacterial c 22.9 3.2E+02 0.0069 24.4 7.0 20 43-63 159-178 (239)
128 cd01832 SGNH_hydrolase_like_1 22.9 4.4E+02 0.0095 21.8 8.0 27 38-64 86-112 (185)
129 PF14488 DUF4434: Domain of un 22.5 3.1E+02 0.0068 23.3 6.4 68 43-126 19-86 (166)
130 PF12681 Glyoxalase_2: Glyoxal 22.0 3.3E+02 0.0071 20.0 6.9 42 106-149 66-107 (108)
131 PRK03147 thiol-disulfide oxido 21.7 1.7E+02 0.0038 24.1 4.7 70 194-283 86-155 (173)
132 TIGR03234 OH-pyruv-isom hydrox 21.6 5.7E+02 0.012 22.7 10.1 61 41-123 81-141 (254)
133 cd01822 Lysophospholipase_L1_l 21.5 2.4E+02 0.0051 23.2 5.6 25 39-63 83-107 (177)
134 COG1134 TagH ABC-type polysacc 21.1 57 0.0012 29.8 1.6 65 54-147 162-226 (249)
135 cd07993 LPLAT_DHAPAT-like Lyso 21.1 3.4E+02 0.0074 23.5 6.6 26 44-69 88-113 (205)
136 COG4586 ABC-type uncharacteriz 20.6 4.4E+02 0.0094 24.9 7.2 44 105-149 194-238 (325)
137 cd08362 BphC5-RrK37_N_like N-t 20.5 2.4E+02 0.0052 21.3 5.0 46 105-150 70-115 (120)
138 PRK03170 dihydrodipicolinate s 20.4 2.1E+02 0.0046 26.4 5.4 26 41-66 80-106 (292)
139 PF09142 TruB_C: tRNA Pseudour 20.1 40 0.00087 23.2 0.3 17 268-284 27-43 (56)
140 cd05562 Peptidases_S53_like Pe 20.0 4.1E+02 0.0089 24.4 7.2 23 43-65 76-98 (275)
No 1
>PLN02504 nitrilase
Probab=100.00 E-value=7.8e-60 Score=450.32 Aligned_cols=330 Identities=87% Similarity=1.433 Sum_probs=283.4
Q ss_pred eeecCCCCCCcceEEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHH
Q 019166 13 EVDMGADSSAPTVRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEF 92 (345)
Q Consensus 13 ~~~~~~~~~~~~~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~ 92 (345)
+|+|+.+...++||||++|+++.+.|.++|++++.+++++|+++|+|||||||++++||+.+..+...++.+.+......
T Consensus 13 ~~~~~~~~~~~~~kiAlvQ~~~~~~d~~~nl~~~~~li~eAa~~gadLIVfPE~~ltGyp~~~~~~~~~~~~~~~~~~~~ 92 (346)
T PLN02504 13 EVDMGADASSSTVRATVVQASTVFYDTPATLDKAERLIAEAAAYGSQLVVFPEAFIGGYPRGSTFGLAIGDRSPKGREDF 92 (346)
T ss_pred CccccccccCCceEEEEEEcCcccCCHHHHHHHHHHHHHHHHHCCCeEEEeCccccccCCcchhhccccccccchhHHHH
Confidence 78999999989999999999998889999999999999999999999999999999999843222111122222233344
Q ss_pred HHHHhcccCCCCHHHHHHHHHHHhcCeEEEEeeEEeeCCeeEEEEEEECCCCceEeeeecCCCCccccceeccCCCCCCC
Q 019166 93 RKYHASAIDVPGPEVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTALERIIWGFGDGSTIP 172 (345)
Q Consensus 93 ~~~~~~a~~~~~~~l~~l~~~a~~~~i~iv~G~~~~~~~~~yNt~~vi~p~G~ii~~y~K~~l~~~E~~~f~~~~G~~~~ 172 (345)
..+.+.++..+++.++.|+++|++++++|++|+.+++++++||++++|+|+|+++++|+|+||++.|+.+|.+|.|..++
T Consensus 93 ~~~~~~a~~~~g~~i~~l~~~A~~~~i~iv~G~~e~~~~~~yNsa~~i~~~G~i~~~yrK~~p~~~E~~~f~~G~g~~~~ 172 (346)
T PLN02504 93 RKYHASAIDVPGPEVDRLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDPQGQYLGKHRKLMPTALERLIWGFGDGSTIP 172 (346)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHcCCEEEEeeeecCCCceEEEEEEECCCCCEEeEEeeccCCcccceeeecCCCCCCc
Confidence 55666777778999999999999999999999998888899999999999999999999999999999999887777789
Q ss_pred eEEcCCCcEEEEeecCCCchHHHHHHHHCCCeEEEEcCCCChhhHhhhhhheeeecCeEEEEeCcccccCCCCCCCCCcc
Q 019166 173 VFETPIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADSREVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEF 252 (345)
Q Consensus 173 vf~~~~~rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~~ 252 (345)
+|+++++|||++||||.+|||+.|.++++||||+++|++++..+|+.++++||+||+|||+.||++|....+|...+.+.
T Consensus 173 vf~~~~griG~lICyD~~fPe~~r~la~~Gadii~~p~~~~~~~w~~~~rarA~En~~~Vv~aN~vg~~~~~~~~~~~~~ 252 (346)
T PLN02504 173 VYDTPIGKIGAVICWENRMPLLRTAMYAKGIEIYCAPTADSRETWQASMRHIALEGGCFVLSANQFCRRKDYPPPPEYLF 252 (346)
T ss_pred eEEcCCceEEEEEeccchhHHHHHHHHHCCCeEEEECCCCCchhHHHHHHHHHHccCcEEEEecccccccccCccccccc
Confidence 99999999999999999999999999999999999999998889999999999999999999999986444443322222
Q ss_pred CCCcCCCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcCCCCCCCCCccceeeeeecCCCCceE
Q 019166 253 SGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLSLVVRDHPATPVT 332 (345)
Q Consensus 253 ~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~~~~~rr~~ly~~~~~~~~~~~~~ 332 (345)
.|.+.+...+...|.|+|+|++|+|++++.+...++++++++||++.++..|..++++++++|||+|++.++++++.|+.
T Consensus 253 ~G~~~~~~~~~~~~~G~S~IvdP~G~vla~~~~~~e~il~adiDl~~i~~~R~~~~~~~~~~r~d~~~l~~~~~~~~~~~ 332 (346)
T PLN02504 253 SGTEEDLTPDSIVCAGGSVIISPSGTVLAGPNYEGEGLITADLDLGEIARAKFDFDVVGHYSRPDVLSLTVNEHPLKPVT 332 (346)
T ss_pred ccccccccccccccCcceEEECCCCCEecCCCCCCCcEEEEEEcHHHHHHHHhhCCccccCCCCcceEEEEcCCCCCcee
Confidence 22232223455789999999999999999887667899999999999999999999999999999999999999999999
Q ss_pred EccCCccccC
Q 019166 333 FTSASAKTEG 342 (345)
Q Consensus 333 ~~~~~~~~~~ 342 (345)
......|.|.
T Consensus 333 ~~~~~~~~~~ 342 (346)
T PLN02504 333 FTSSPEKAED 342 (346)
T ss_pred eccccccccc
Confidence 8877777664
No 2
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-55 Score=381.79 Aligned_cols=328 Identities=70% Similarity=1.198 Sum_probs=313.3
Q ss_pred ecCCCCCCcceEEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHH
Q 019166 15 DMGADSSAPTVRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRK 94 (345)
Q Consensus 15 ~~~~~~~~~~~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 94 (345)
.|+.-.++...||+++|......|..+.++++++.+.+|+..|+.||||||.++.||+.+..|+..+|.++++.+.++.+
T Consensus 8 ~~~~~d~~s~~~v~ivQ~~t~~~dtpaTL~K~~~~~~Eaa~~Ga~LV~fPEAfiGGYPrg~~Fg~~~G~r~~eGR~ef~k 87 (337)
T KOG0805|consen 8 PFNGVDSSSIVRVTIVQASTVYNDTPATLDKAEKYIVEAASKGAELVLFPEAFIGGYPRGFRFGLAVGVRNEEGRDEFRK 87 (337)
T ss_pred CccccCcccceEEEEEEcccCCCCCHHHHHHHHHHHHHHhcCCceEEEeehHhccCCCCcceeeEEEeecchhhhHHHHH
Confidence 34444455679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccCCCCHHHHHHHHHHHhcCeEEEEeeEEeeCCeeEEEEEEECCCCceEeeeecCCCCccccceeccCCCCCCCeE
Q 019166 95 YHASAIDVPGPEVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTALERIIWGFGDGSTIPVF 174 (345)
Q Consensus 95 ~~~~a~~~~~~~l~~l~~~a~~~~i~iv~G~~~~~~~~~yNt~~vi~p~G~ii~~y~K~~l~~~E~~~f~~~~G~~~~vf 174 (345)
|+..|.+++++.++.|..+|+++++++++|.+|+++..+|.+++.++|+|..+++|||+.|+..|+-.|+.|.|+.++||
T Consensus 88 Y~a~AIev~gpEv~~l~~la~~~~v~lv~G~iEreg~TLYCt~~f~~p~g~~lGKHRKlmPTalERciWGqGDGSTiPV~ 167 (337)
T KOG0805|consen 88 YHASAIEVPGPEVERLAELAKKNNVYLVMGAIEREGYTLYCTVLFFSPQGQFLGKHRKLMPTALERCIWGQGDGSTIPVY 167 (337)
T ss_pred HHHHhhcCCChHHHHHHHHhhcCCeEEEEEEEeccccEEEEEEEEECCCccccccccccccchhhheeeccCCCccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCcEEEEeecCCCchHHHHHHHHCCCeEEEEcCCCChhhHhhhhhheeeecCeEEEEeCcccccCCCCCCCCCccCC
Q 019166 175 ETPIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADSREVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSG 254 (345)
Q Consensus 175 ~~~~~rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~~~~ 254 (345)
+|+.||||-+||||.+.|-+...+..+|++|.+.|+.+....|+..+...|.|-+|||+.+++.....++|..++++++.
T Consensus 168 dT~iGKIG~AICWEN~MPl~R~alY~KgieIycAPT~D~r~~w~~sM~~IAlEG~cFvlSA~QF~k~~d~p~~peyl~~~ 247 (337)
T KOG0805|consen 168 DTPIGKIGAAICWENRMPLYRTALYAKGIEIYCAPTADGRKEWQSSMLHIALEGGCFVLSACQFCKRKDFPDHPDYLFTD 247 (337)
T ss_pred ecccchhceeeecccccHHHHHHHHhcCcEEEeccCCCCcHHHHHhhhheeecCceEEEEhhhhcccccCCCCchhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcCCCCCCCCCccceeeeeecCCCCceEEc
Q 019166 255 TEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLSLVVRDHPATPVTFT 334 (345)
Q Consensus 255 ~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~~~~~rr~~ly~~~~~~~~~~~~~~~ 334 (345)
..++...|.....|+|.||+|.|++++......|+++++|+|+..+..+|..+|+++||.|||.|.+.+++|++.++++-
T Consensus 248 ~~~~k~pD~vv~~GGSviI~PlG~VlagP~~~~EgL~tadldl~dIA~ak~d~DvVGHYsRpDVFqLtVnE~~~~~v~~k 327 (337)
T KOG0805|consen 248 WYDDKEPDSVVSQGGSVIISPLGQVLAGPNFESEGLITADLDLGDIARAKLDFDVVGHYSRPDVFQLTVNEHPRKPVTFK 327 (337)
T ss_pred chhccCCCcceecCCcEEEccccceecCCCcCccceEEEeccchhhhhhccccccccccCCCceEEEEeccCCCCceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred cCCccccC
Q 019166 335 SASAKTEG 342 (345)
Q Consensus 335 ~~~~~~~~ 342 (345)
..-.|.|.
T Consensus 328 t~~~~~~~ 335 (337)
T KOG0805|consen 328 TKVEKAED 335 (337)
T ss_pred eeeeeccc
Confidence 55555443
No 3
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=100.00 E-value=6.4e-54 Score=402.99 Aligned_cols=291 Identities=53% Similarity=0.890 Sum_probs=246.2
Q ss_pred eEEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCC
Q 019166 25 VRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPG 104 (345)
Q Consensus 25 ~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 104 (345)
||||++|+++.+.|++.|++++.+++++|+++|+|||||||++++||.....+. .+..+...+..+.+.+...++
T Consensus 1 ~kia~~Q~~~~~~d~~~nl~~~~~~i~~A~~~ga~lvvfPE~~l~gy~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 75 (297)
T cd07564 1 VKVAAVQAAPVFLDLAATVEKACRLIEEAAANGAQLVVFPEAFIPGYPYWIWFG-----APAEGRELFARYYENSVEVDG 75 (297)
T ss_pred CEEEEEecCcccCCHHHHHHHHHHHHHHHHHCCCCEEEeccccccCCCchhhcC-----CcccchHHHHHHHHhCcCCCC
Confidence 799999999888899999999999999999999999999999999998321110 011123344445566666678
Q ss_pred HHHHHHHHHHHhcCeEEEEeeEEeeCCeeEEEEEEECCCCceEeeeecCCCCccccceeccCCCCCCCeEEcCCCcEEEE
Q 019166 105 PEVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTALERIIWGFGDGSTIPVFETPIGKIGAA 184 (345)
Q Consensus 105 ~~l~~l~~~a~~~~i~iv~G~~~~~~~~~yNt~~vi~p~G~ii~~y~K~~l~~~E~~~f~~~~G~~~~vf~~~~~rigv~ 184 (345)
++++.|+++|++++++|++|+++++++++||++++|+|+|+++++|+|+||+..|..+|.++.|..+++|+++++|||++
T Consensus 76 ~~~~~l~~~a~~~~i~iv~G~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~l~~~E~~~~~~g~~~~~~v~~~~~~kig~~ 155 (297)
T cd07564 76 PELERLAEAARENGIYVVLGVSERDGGTLYNTQLLIDPDGELLGKHRKLKPTHAERLVWGQGDGSGLRVVDTPIGRLGAL 155 (297)
T ss_pred HHHHHHHHHHHHcCcEEEEeeEeccCCceEEEEEEEcCCCCEeeeeeccCCCchhhhhcccCCCCCceEEecCCceEEEE
Confidence 99999999999999999999988878899999999999999999999999999999998877766788999999999999
Q ss_pred eecCCCchHHHHHHHHCCCeEEEEcCCC------ChhhHhhhhhheeeecCeEEEEeCcccccCCCCCCCCCccCCCcCC
Q 019166 185 ICWENRMPLLRTAMYAKGIEIYCAPTAD------SREVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSGTEQD 258 (345)
Q Consensus 185 IC~D~~fpe~~r~~~~~ga~li~~ps~~------~~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~~~~~~~~ 258 (345)
||||++|||+.|.++++||+++++|++. ...+|+.++++||+||++||+.||++|.+...|.. ....+ .
T Consensus 156 ICyD~~fPe~~r~~a~~ga~ii~~~~~~~~~~~~~~~~~~~~~~arAien~~~vv~~N~vG~~~~~~~~----~~~~~-~ 230 (297)
T cd07564 156 ICWENYMPLARYALYAQGEQIHVAPWPDFSPYYLSREAWLAASRHYALEGRCFVLSACQVVTEEDIPAD----CEDDE-E 230 (297)
T ss_pred EEhhcCCHHHHHHHHHCCCeEEEECCCCcccccccHHHHHHHHHHHHHhcCCEEEEcccccChhHcccc----ccccc-c
Confidence 9999999999999999999999998764 36799999999999999999999999973222111 00000 1
Q ss_pred CCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcCCCCCCCCCccceeeeeec
Q 019166 259 LTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLSLVVRD 325 (345)
Q Consensus 259 ~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~~~~~rr~~ly~~~~~~ 325 (345)
...+...+.|+|+|++|+|+++++++.+++++++++||++.+++.|..++++.++||||+|++-+++
T Consensus 231 ~~~~~~~~~G~S~iv~P~G~il~~~~~~~e~~l~a~id~~~~~~~r~~~~~~~~~~r~~~~~~~~~~ 297 (297)
T cd07564 231 ADPLEVLGGGGSAIVGPDGEVLAGPLPDEEGILYADIDLDDIVEAKLDFDPVGHYSRPDVFSLTVDR 297 (297)
T ss_pred cccccccCCCceEEECCCCCeecCCCCCCceEEEEEecHHHHHHHHhcCCCCCCCCCchhhceeeCC
Confidence 1234567899999999999999999878999999999999999999999998876899999998874
No 4
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=1.7e-51 Score=394.73 Aligned_cols=282 Identities=25% Similarity=0.372 Sum_probs=230.3
Q ss_pred CcceEEEEEeccCCC-------CChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHH
Q 019166 22 APTVRATVVQASTIF-------YDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRK 94 (345)
Q Consensus 22 ~~~~rIa~vQ~~~~~-------~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 94 (345)
...||||++|+++.. +|.++|++++.+++++|+++|+|||||||+|++||.+. ..+.. .
T Consensus 61 ~~~~rIAlvQ~~~~~~~~~p~~~d~~~nl~ki~~~i~~Aa~~gadLivfPE~~l~g~~~~-----------~~~~~---~ 126 (363)
T cd07587 61 PRIVRVGLIQNKIVLPTTAPIAEQREAIHDRIKKIIEAAAMAGVNIICFQEAWTMPFAFC-----------TREKL---P 126 (363)
T ss_pred CceEEEEEEeccccccccCccccCHHHHHHHHHHHHHHHHHcCCCEEEccccccCCcccc-----------ccccc---h
Confidence 347999999998654 48999999999999999999999999999999998621 11111 1
Q ss_pred HHhcccCC-CCHHHHHHHHHHHhcCeEEEEeeEEeeC---CeeEEEEEEECCCCceEeeeecCCCCc----cccceeccC
Q 019166 95 YHASAIDV-PGPEVERLAAMAGKYKVYLVMGVIERDG---YTLYCTVLFFDSQGHFLGKHRKIMPTA----LERIIWGFG 166 (345)
Q Consensus 95 ~~~~a~~~-~~~~l~~l~~~a~~~~i~iv~G~~~~~~---~~~yNt~~vi~p~G~ii~~y~K~~l~~----~E~~~f~~~ 166 (345)
+.+.++.. ++++++.++++|++++++|++|+.++++ +++||++++|+|+|++++.|+|+|++. .|+.+|.+|
T Consensus 127 ~~~~ae~~~~g~~~~~l~~lAk~~~i~Iv~gi~e~~~~~~~~~yNta~vi~~~G~ilg~yrK~hL~~~~~~~E~~~f~~G 206 (363)
T cd07587 127 WCEFAESAEDGPTTKFCQELAKKYNMVIVSPILERDEEHGDTIWNTAVVISNSGNVLGKSRKNHIPRVGDFNESTYYMEG 206 (363)
T ss_pred HHHHhhccCCChHHHHHHHHHHHcCcEEEEeeeeeecCCCCcEEEEEEEECCCCCEEeeeeeEecCCCCCccceeEEecC
Confidence 22233343 5789999999999999999999888753 689999999999999999999999873 588888754
Q ss_pred CCCCCCeEEcCCCcEEEEeecCCCchHHHHHHHHCCCeEEEEcCCCC----hhhHhhhhhheeeecCeEEEEeCcccccC
Q 019166 167 DGSTIPVFETPIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADS----REVWQASMTHIALEGGCFVLSANQFCRRK 242 (345)
Q Consensus 167 ~G~~~~vf~~~~~rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~----~~~~~~~~~~rA~en~~~vv~~n~~G~~~ 242 (345)
. ..+++|+++++|||++||||.+|||++|.++++||||+++|++++ ..+|..++++||+||++||+.+|++|.+.
T Consensus 207 ~-~~~~vf~t~~griG~~ICyD~~fPe~~r~la~~GAdiil~Psa~~~~~~~~~w~~~~rarAieN~~fVv~~NrvG~e~ 285 (363)
T cd07587 207 N-TGHPVFETQFGKIAVNICYGRHHPLNWLMYGLNGAEIVFNPSATVGALSEPMWPIEARNAAIANSYFTVGINRVGTEV 285 (363)
T ss_pred C-CCCceEEcCCceEEEEEecccCCcHHHHHHHHcCCcEEEECCCcCCCCchHHHHHHHHHHHHhcCcEEEEeccccccc
Confidence 3 237899999999999999999999999999999999999999984 35899999999999999999999999731
Q ss_pred CCCCCCCCccCCCcCCCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcCCCCCCCCCccceeee
Q 019166 243 DYPPPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLSLV 322 (345)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~~~~~rr~~ly~~~ 322 (345)
+|.. + .++.+.....+...|+|+|+|++|+|++++.++..+|++++++||++.+++.|..++++. .||||+|+..
T Consensus 286 -~~~~--~-~~~~g~~~~~~~~~f~G~S~Ii~P~G~il~~~~~~~E~ll~adiDl~~i~~~R~~~~~~~-~~r~~~y~~~ 360 (363)
T cd07587 286 -FPNE--F-TSGDGKPAHKDFGHFYGSSYVAAPDGSRTPGLSRTRDGLLVAELDLNLCRQVKDKWGFRM-TARYEMYADF 360 (363)
T ss_pred -cccc--c-ccccccccccccccccceeEEECCCCCCccCCCCCCCcEEEEEecHHHHHHHHhcCCCCc-cCCHHHHHHH
Confidence 1110 0 000011111223468999999999999999887678999999999999999999999876 6999999765
Q ss_pred e
Q 019166 323 V 323 (345)
Q Consensus 323 ~ 323 (345)
.
T Consensus 361 ~ 361 (363)
T cd07587 361 L 361 (363)
T ss_pred h
Confidence 4
No 5
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=100.00 E-value=8.3e-51 Score=378.24 Aligned_cols=262 Identities=29% Similarity=0.450 Sum_probs=226.8
Q ss_pred eEEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCC-
Q 019166 25 VRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVP- 103 (345)
Q Consensus 25 ~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~- 103 (345)
||||++|+++. +|.++|++++.+++++|+++|+|||||||++++||... +. ...+.+.++...
T Consensus 1 ~~ia~~Q~~~~-~d~~~Nl~~~~~~i~~A~~~gadlivfPE~~~~gy~~~-------------~~--~~~~~~~a~~~~~ 64 (279)
T TIGR03381 1 VTVAALQMACS-DDVETNIARAERLVREAAARGAQIILLPELFEGPYFCK-------------DQ--DEDYFALAQPVEG 64 (279)
T ss_pred CEEEEEEeecc-CCHHHHHHHHHHHHHHHHHCCCCEEEcccccCCCCcCC-------------cc--ccchHhhcCcCCC
Confidence 69999999987 89999999999999999999999999999999999732 11 011233444333
Q ss_pred CHHHHHHHHHHHhcCeEEEEeeEEeeCCeeEEEEEEECCCCceEeeeecCCCCc----cccceeccCCCC-CCCeEEcCC
Q 019166 104 GPEVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTA----LERIIWGFGDGS-TIPVFETPI 178 (345)
Q Consensus 104 ~~~l~~l~~~a~~~~i~iv~G~~~~~~~~~yNt~~vi~p~G~ii~~y~K~~l~~----~E~~~f~~~~G~-~~~vf~~~~ 178 (345)
++.++.++++|++++++|++|+.+++++++||++++++|+|++++.|+|+||+. .|..+|. +|+ .+.+|++++
T Consensus 65 ~~~~~~l~~~a~~~~i~i~~g~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~E~~~f~--~G~~~~~~f~~~~ 142 (279)
T TIGR03381 65 HPAIKRFQALAKELGVVIPVSFFEKAGNAYYNSLAMIDADGSVLGVYRKSHIPDGPGYQEKFYFR--PGDTGFKVWDTRY 142 (279)
T ss_pred ChHHHHHHHHHHHcCcEEEEeeeecCCCceEEeEEEECCCCCEEEEEEeeecCCCCCcccceeEc--cCCCCCceEecCC
Confidence 578999999999999999999998888899999999999999999999999864 4777776 454 478999999
Q ss_pred CcEEEEeecCCCchHHHHHHHHCCCeEEEEcCCCC----------hhhHhhhhhheeeecCeEEEEeCcccccCCCCCCC
Q 019166 179 GKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADS----------REVWQASMTHIALEGGCFVLSANQFCRRKDYPPPP 248 (345)
Q Consensus 179 ~rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~----------~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~ 248 (345)
+|+|++||||++||++.|.++++|||+|++|++++ ..+|+.++++||+||++|+++||++|.+.
T Consensus 143 ~~ig~~IC~D~~fpe~~r~~a~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~------ 216 (279)
T TIGR03381 143 GRIGVGICWDQWFPETARAMALMGAEVLFYPTAIGSEPHDPDLDSRDHWQRVMQGHAAANLVPVVAANRIGTEV------ 216 (279)
T ss_pred ceEEEEEEcCCcChHHHHHHHHcCCCEEEecCccCCCCcccccccHHHHHHHHHHHHHhCCCeEEEEecccccC------
Confidence 99999999999999999999999999999999852 35898899999999999999999999821
Q ss_pred CCccCCCcCCCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcCCCCCCCCCccceee
Q 019166 249 EYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLSL 321 (345)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~~~~~rr~~ly~~ 321 (345)
...++..|.|.|+|++|+|+++++++.+++++++++||++.++..|..++++. +|||++|+.
T Consensus 217 ----------~~~~~~~~~G~S~i~~p~G~il~~~~~~~e~~~~~~id~~~~~~~r~~~~~~~-~~r~~~y~~ 278 (279)
T TIGR03381 217 ----------GDGGEQTFYGSSFIADHTGELVAEAGRSEEAVLVATFDLDEIAKQRAAWGFFR-DRRPELYGP 278 (279)
T ss_pred ----------CCCCcceEeeeEEEECCCCcEeecCCCCCCceEEEEeCHHHHHHHHhcCchhh-hCChhhccC
Confidence 01245678999999999999999998788999999999999999999998875 689999974
No 6
>PLN00202 beta-ureidopropionase
Probab=100.00 E-value=1.2e-49 Score=385.88 Aligned_cols=282 Identities=26% Similarity=0.377 Sum_probs=232.3
Q ss_pred CcceEEEEEeccCCC-------CChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHH
Q 019166 22 APTVRATVVQASTIF-------YDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRK 94 (345)
Q Consensus 22 ~~~~rIa~vQ~~~~~-------~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 94 (345)
...||||++|+++.+ .+.++|++++.+++++|+++|+|||||||+|++||.+. ... ..
T Consensus 84 ~~~~rValiQ~~i~~~~~~~~~~~~~~nl~~~~~li~~Aa~~gadLVvfPE~~~~g~~~~-----------~~~----~~ 148 (405)
T PLN00202 84 PRVVRVGLIQNSIALPTTAPFADQKRAIMDKVKPMIDAAGAAGVNILCLQEAWTMPFAFC-----------TRE----KR 148 (405)
T ss_pred CCeEEEEEEecccccCCCCcccCCHHHHHHHHHHHHHHHHHCCCCEEEecchhccccccc-----------ccc----ch
Confidence 457999999999743 58999999999999999999999999999999998621 000 01
Q ss_pred HHhcccCCCCHHHHHHHHHHHhcCeEEEEeeEEee---CCeeEEEEEEECCCCceEeeeecCCCCc----cccceeccCC
Q 019166 95 YHASAIDVPGPEVERLAAMAGKYKVYLVMGVIERD---GYTLYCTVLFFDSQGHFLGKHRKIMPTA----LERIIWGFGD 167 (345)
Q Consensus 95 ~~~~a~~~~~~~l~~l~~~a~~~~i~iv~G~~~~~---~~~~yNt~~vi~p~G~ii~~y~K~~l~~----~E~~~f~~~~ 167 (345)
+.+.++..+++.++.++++|++++++|++|+.+++ ++++||++++|+++|+++++|+|+|+++ .|+.+|.+|
T Consensus 149 ~~~~ae~~~g~~~~~l~~lA~~~~i~Iv~G~~e~~~~~~~~~yNSa~vI~~~G~iig~YrKiHL~~~g~~~E~~~f~~G- 227 (405)
T PLN00202 149 WCEFAEPVDGESTKFLQELARKYNMVIVSPILERDVNHGETLWNTAVVIGNNGNIIGKHRKNHIPRVGDFNESTYYMEG- 227 (405)
T ss_pred HHHHhhhCCCHHHHHHHHHHHHCCeEEEEEeeeeecCCCCcEEEEEEEECCCCcEEEEEecccCCCCCCccccceeecC-
Confidence 23344556688999999999999999999988764 3579999999999999999999999874 488888754
Q ss_pred CCC-CCeEEcCCCcEEEEeecCCCchHHHHHHHHCCCeEEEEcCCCC----hhhHhhhhhheeeecCeEEEEeCcccccC
Q 019166 168 GST-IPVFETPIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADS----REVWQASMTHIALEGGCFVLSANQFCRRK 242 (345)
Q Consensus 168 G~~-~~vf~~~~~rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~----~~~~~~~~~~rA~en~~~vv~~n~~G~~~ 242 (345)
+. .++|+++++|||++||||++|||++|.++.+|||+|++|++++ ..+|..++++||+||++||++||++|.+.
T Consensus 228 -~~g~~vf~t~~gkiGv~ICYD~~FPE~~r~la~~GAdiIl~Psa~~~~~~~~~w~~~~raRAiEN~~fvv~aNrvG~~~ 306 (405)
T PLN00202 228 -NTGHPVFETAFGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGDLSEPMWPIEARNAAIANSYFVGSINRVGTEV 306 (405)
T ss_pred -CCCceEEEeCCCeEEEEEccccccHHHHHHHHHCCCcEEEECCCCCCccCHHHHHHHHHHHHHhcCCEEEEeccccccc
Confidence 44 6799999999999999999999999999999999999999984 36899999999999999999999999731
Q ss_pred CCCCCCCCccCCCcCCCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcCCCCCCCCCccceeee
Q 019166 243 DYPPPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLSLV 322 (345)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~~~~~rr~~ly~~~ 322 (345)
.|. ++. ++.+...+.+...|+|+|+|++|+|++++.++..+|++++++||++.+++.|..++++. .||||+|+..
T Consensus 307 -~~~--~~~-~~~g~~~~~~~~~f~G~S~Iv~P~G~vla~~~~~~E~llvadIDl~~v~~~R~~~~~~~-~rR~~ly~~~ 381 (405)
T PLN00202 307 -FPN--PFT-SGDGKPQHKDFGHFYGSSHFSAPDASCTPSLSRYKDGLLISDMDLNLCRQLKDKWGFRM-TARYEMYADF 381 (405)
T ss_pred -ccc--ccc-cccccccccccccccceeEEEcCCCCEeccCCCCCCcEEEEEeCHHHHHHHHHhCCccc-ccCHhHHHHH
Confidence 111 000 00000011223568999999999999999987678999999999999999999999876 6999999887
Q ss_pred eec
Q 019166 323 VRD 325 (345)
Q Consensus 323 ~~~ 325 (345)
..+
T Consensus 382 ~~~ 384 (405)
T PLN00202 382 FAE 384 (405)
T ss_pred HHh
Confidence 664
No 7
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=100.00 E-value=4.7e-49 Score=361.50 Aligned_cols=250 Identities=32% Similarity=0.429 Sum_probs=221.3
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCH
Q 019166 26 RATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGP 105 (345)
Q Consensus 26 rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 105 (345)
|||++|+++..+|.+.|++++.+++++|+++|+|||||||++++||... +.. .+.++...++
T Consensus 1 kva~~Q~~~~~~d~~~n~~~i~~~i~~a~~~ga~lvv~PE~~l~g~~~~-------------~~~-----~~~~~~~~~~ 62 (254)
T cd07576 1 RLALYQGPARDGDVAANLARLDEAAARAAAAGADLLVFPELFLTGYNIG-------------DAV-----ARLAEPADGP 62 (254)
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEccCccccCCCCc-------------chh-----hhhhcccCCh
Confidence 7999999998899999999999999999999999999999999999832 111 1113345578
Q ss_pred HHHHHHHHHHhcCeEEEEeeEEeeCCeeEEEEEEECCCCceEeeeecCCCCc-cccceeccCCCCCCCeEEcCCCcEEEE
Q 019166 106 EVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTA-LERIIWGFGDGSTIPVFETPIGKIGAA 184 (345)
Q Consensus 106 ~l~~l~~~a~~~~i~iv~G~~~~~~~~~yNt~~vi~p~G~ii~~y~K~~l~~-~E~~~f~~~~G~~~~vf~~~~~rigv~ 184 (345)
.++.++++|+++++++++|+++++++++||++++++|+|++++.|+|+||+. .|..+|. +|+.+.+|+++++|+|++
T Consensus 63 ~~~~l~~~a~~~~~~ii~G~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~~E~~~~~--~G~~~~v~~~~~~kig~~ 140 (254)
T cd07576 63 ALQALRAIARRHGIAIVVGYPERAGGAVYNAAVLIDEDGTVLANYRKTHLFGDSERAAFT--PGDRFPVVELRGLRVGLL 140 (254)
T ss_pred HHHHHHHHHHHcCCEEEEeccccCCCceEEEEEEECCCCCEeeEEEeeccCCcchhhhcc--CCCCceEEEECCeEEEEE
Confidence 8999999999999999999988888899999999999999999999999987 6888876 456689999999999999
Q ss_pred eecCCCchHHHHHHHHCCCeEEEEcCCCC---hhhHhhhhhheeeecCeEEEEeCcccccCCCCCCCCCccCCCcCCCCC
Q 019166 185 ICWENRMPLLRTAMYAKGIEIYCAPTADS---REVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSGTEQDLTP 261 (345)
Q Consensus 185 IC~D~~fpe~~r~~~~~ga~li~~ps~~~---~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~~~~~~~~~~~ 261 (345)
||||++||++.+.++++|||+|++|++++ ..+|..++++||+||++|+++||++|. .
T Consensus 141 IC~D~~fpe~~~~~~~~gadii~~p~~~~~~~~~~~~~~~~~rA~en~~~vv~an~~G~--------------------~ 200 (254)
T cd07576 141 ICYDVEFPELVRALALAGADLVLVPTALMEPYGFVARTLVPARAFENQIFVAYANRCGA--------------------E 200 (254)
T ss_pred EeecCCCCHHHHHHHHCCCCEEEECCccCCCcchhhhhhhHHHHHhCCCEEEEEcccCC--------------------C
Confidence 99999999999999999999999999764 356788899999999999999999998 3
Q ss_pred CCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcCCCCCCCCCcc
Q 019166 262 DSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPE 317 (345)
Q Consensus 262 ~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~~~~~rr~~ 317 (345)
++..+.|+|+|++|+|+++++++.+ +++++++||+++++..|..++++. +||++
T Consensus 201 ~~~~~~G~S~i~~p~G~il~~~~~~-e~~~~~~id~~~~~~~R~~~~~~~-~~~~~ 254 (254)
T cd07576 201 DGLTYVGLSSIAGPDGTVLARAGRG-EALLVADLDPAALAAARRENPYLA-DRRPE 254 (254)
T ss_pred CCceeeeeeEEECCCCCEeEecCCC-CeEEEEEcCHHHHHhhhhcCchhh-hcCCC
Confidence 4557899999999999999998866 899999999999999999998775 57764
No 8
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=100.00 E-value=7.6e-49 Score=361.05 Aligned_cols=247 Identities=19% Similarity=0.275 Sum_probs=210.7
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCC
Q 019166 24 TVRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVP 103 (345)
Q Consensus 24 ~~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 103 (345)
+||||++|+++..+|.+.|++++.++++++ +|+|||||||++++||... +.. + ... .
T Consensus 3 ~mkia~~Q~~~~~~d~~~Nl~~~~~~i~~a--~gadLivfPE~~~~Gy~~~-------------~~~------~-~~~-~ 59 (256)
T PRK10438 3 GLKITLLQQPLVWMDGPANLRHFDRQLEGI--TGRDVIVLPEMFTTGFAME-------------AAA------S-SLP-Q 59 (256)
T ss_pred CCEEEEEEecCccCCHHHHHHHHHHHHHhc--cCCCEEEeCCcccCCCccc-------------chh------h-ccc-c
Confidence 499999999998889999999999999985 6999999999999999721 110 0 011 2
Q ss_pred CHHHHHHHHHHHhcCeEEEEeeE-EeeCCeeEEEEEEECCCCceEeeeecCCCCc--cccceeccCCCCCCCeEEcCCCc
Q 019166 104 GPEVERLAAMAGKYKVYLVMGVI-ERDGYTLYCTVLFFDSQGHFLGKHRKIMPTA--LERIIWGFGDGSTIPVFETPIGK 180 (345)
Q Consensus 104 ~~~l~~l~~~a~~~~i~iv~G~~-~~~~~~~yNt~~vi~p~G~ii~~y~K~~l~~--~E~~~f~~~~G~~~~vf~~~~~r 180 (345)
+++.+.++++|+++++.| +|+. +++++++||++++++|+|. +..|+|+||+. .|..+|. +|+.+.+|+++++|
T Consensus 60 ~~~~~~l~~~A~~~~~~i-~g~~~~~~~~~~~Nsa~vi~~~G~-~~~y~K~hL~~~~~E~~~f~--~G~~~~v~~~~~~~ 135 (256)
T PRK10438 60 DDVVAWMTAKAQQTNALI-AGSVALQTESGAVNRFLLVEPGGT-VHFYDKRHLFRMADEHLHYK--AGNARVIVEWRGWR 135 (256)
T ss_pred chHHHHHHHHHHHcCeEE-EEEEEEecCCCeEEEEEEEcCCCC-EEEEeeeecCCCCCccceec--CCCCceEEEECCEE
Confidence 467889999999999754 5655 4556779999999999997 67999999974 5777886 56678999999999
Q ss_pred EEEEeecCCCchHHHHHHHHCCCeEEEEcCCCC---hhhHhhhhhheeeecCeEEEEeCcccccCCCCCCCCCccCCCcC
Q 019166 181 IGAAICWENRMPLLRTAMYAKGIEIYCAPTADS---REVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSGTEQ 257 (345)
Q Consensus 181 igv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~---~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~~~~~~~ 257 (345)
||++||||++|||+.|.+ +|+|++++|++|+ ..+|+.++++||+||++||++||++|.+
T Consensus 136 iG~~ICyD~~fPe~~r~l--~gad~i~~~s~~~~~~~~~~~~~~~aRA~En~~~vv~~n~~G~~---------------- 197 (256)
T PRK10438 136 ILPLVCYDLRFPVWSRNR--NDYDLALYVANWPAPRSLHWQTLLTARAIENQAYVAGCNRVGSD---------------- 197 (256)
T ss_pred EEEEEEeecCCHHHHHhh--cCCCEEEEecCCCCCchHHHHHHHHHHHHhcCcEEEEecccccC----------------
Confidence 999999999999999985 7999999999985 4589999999999999999999999982
Q ss_pred CCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcCCCCCCCCCccce
Q 019166 258 DLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVL 319 (345)
Q Consensus 258 ~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~~~~~rr~~ly 319 (345)
.++..|.|+|+|+||+|+++++++.+++++++++||++.++..|..+|++. +|++..|
T Consensus 198 ---~~~~~~~G~S~ivdP~G~vl~~~~~~~e~~i~~~idl~~~~~~R~~~~~l~-~r~~~~~ 255 (256)
T PRK10438 198 ---GNGHHYRGDSRIINPQGEIIATAEPHQATRIDAELSLEALQEYREKFPAWR-DADEFTL 255 (256)
T ss_pred ---CCCCEEcCceEEECCCCcEEEEcCCCCcEEEEEEECHHHHHHHHHhCCccc-cCChhhc
Confidence 234689999999999999999998788999999999999999999999876 4665544
No 9
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=100.00 E-value=5.4e-49 Score=367.74 Aligned_cols=267 Identities=30% Similarity=0.460 Sum_probs=227.0
Q ss_pred cceEEEEEeccCC-------CCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHH
Q 019166 23 PTVRATVVQASTI-------FYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKY 95 (345)
Q Consensus 23 ~~~rIa~vQ~~~~-------~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (345)
.+||||++|+++. ..+.++|++++.+++++|+++|+|||||||++++||... +. ...+
T Consensus 2 ~~~rva~vQ~~~~~~~~~~~~~~~~~nl~~~~~~i~~A~~~gadlvvfPE~~~~g~~~~-------------~~--~~~~ 66 (287)
T cd07568 2 RIVRVGLIQASNVIPTDAPIEKQKEAMIQKHVTMIREAAEAGAQIVCLQEIFYGPYFCA-------------EQ--DTKW 66 (287)
T ss_pred ceEEEEEEEeecccccccccccCHHHHHHHHHHHHHHHHHcCCcEEEcccccCCCCCcc-------------cc--ccch
Confidence 3599999999976 478999999999999999999999999999999998621 10 0112
Q ss_pred HhcccCC-CCHHHHHHHHHHHhcCeEEEEeeEEee-CCeeEEEEEEECCCCceEeeeecCCCCc----cccceeccCCCC
Q 019166 96 HASAIDV-PGPEVERLAAMAGKYKVYLVMGVIERD-GYTLYCTVLFFDSQGHFLGKHRKIMPTA----LERIIWGFGDGS 169 (345)
Q Consensus 96 ~~~a~~~-~~~~l~~l~~~a~~~~i~iv~G~~~~~-~~~~yNt~~vi~p~G~ii~~y~K~~l~~----~E~~~f~~~~G~ 169 (345)
.+.++.. ++++++.|+++|++++++|++|+.+++ ++++||++++++|+|++++.|+|+||+. .|..+|.+|. .
T Consensus 67 ~~~~~~~~~~~~~~~l~~~a~~~~i~ii~g~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~e~~~f~~G~-~ 145 (287)
T cd07568 67 YEFAEEIPNGPTTKRFAALAKEYNMVLILPIYEKEQGGTLYNTAAVIDADGTYLGKYRKNHIPHVGGFWEKFYFRPGN-L 145 (287)
T ss_pred hhhcccCCCChHHHHHHHHHHHCCEEEEEEeEEEcCCCcEEEEEEEECCCCcEeeEEeeeecCCCCccceeeeecCCC-C
Confidence 3334444 578899999999999999999988765 5789999999999999999999999853 3667776443 1
Q ss_pred CCCeEEcCCCcEEEEeecCCCchHHHHHHHHCCCeEEEEcCCCC----hhhHhhhhhheeeecCeEEEEeCcccccCCCC
Q 019166 170 TIPVFETPIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADS----REVWQASMTHIALEGGCFVLSANQFCRRKDYP 245 (345)
Q Consensus 170 ~~~vf~~~~~rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~----~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~ 245 (345)
...+|+++++|+|++||||.+||++.|.++.+|||+|++|+++. ...|....++||+||++|++.+|++|...
T Consensus 146 ~~~~f~~~~~~iG~~ICyD~~fpe~~r~la~~Ga~li~~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~N~~G~~~--- 222 (287)
T cd07568 146 GYPVFDTAFGKIGVYICYDRHFPEGWRALGLNGAEIVFNPSATVAGLSEYLWKLEQPAAAVANGYFVGAINRVGTEA--- 222 (287)
T ss_pred CCceEEcCCceEEEEEEecccCchHHHHHHHCCCeEEEECCcCCCCCchhhhHHHHHHHHHHCCcEEEEeccccccC---
Confidence 47899999999999999999999999999999999999999984 35788888999999999999999999821
Q ss_pred CCCCCccCCCcCCCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcCCCCCCCCCccceeeee
Q 019166 246 PPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLSLVV 323 (345)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~~~~~rr~~ly~~~~ 323 (345)
..+...+.|.|+|++|+|+++++++.+++++++++||++.++..|..++++. +|||++|+.+.
T Consensus 223 --------------~~~~~~~~G~S~ii~p~G~il~~~~~~~~~~l~a~id~~~~~~~R~~~~~~~-~~r~~~y~~~~ 285 (287)
T cd07568 223 --------------PWNIGEFYGSSYFVDPRGQFVASASRDKDELLVAELDLDLIREVRDTWQFYR-DRRPETYGELT 285 (287)
T ss_pred --------------CCccceEeceeEEECCCceEEEecCCCCCeEEEEEecHHHHHHHHhhCchhh-hcCHHHhHHhh
Confidence 0122478999999999999999998788999999999999999999998876 69999998643
No 10
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=3.5e-49 Score=367.45 Aligned_cols=228 Identities=28% Similarity=0.394 Sum_probs=201.1
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCH
Q 019166 26 RATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGP 105 (345)
Q Consensus 26 rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 105 (345)
|||++|+++.. |++.|++++.+++++|+++|+|||||||++++||... . ..++...++
T Consensus 1 ria~~Q~~~~~-d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~ltG~~~~-------------~--------~~~~~~~~~ 58 (279)
T cd07579 1 RIAVAQFAPTP-DIAGNLATIDRLAAEAKATGAELVVFPELALTGLDDP-------------A--------SEAESDTGP 58 (279)
T ss_pred CEEEEeccCcc-CHHHHHHHHHHHHHHHHHCCCCEEEeCCccccCCCCh-------------H--------HhcccCCCH
Confidence 69999999874 9999999999999999999999999999999998721 0 122344578
Q ss_pred HHHHHHHHHHhcCeEEEEeeEEeeCCeeEEEEEEECCCCceEeeeecCCCCccccceeccCCCCCCCeEEcCCCcEEEEe
Q 019166 106 EVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTALERIIWGFGDGSTIPVFETPIGKIGAAI 185 (345)
Q Consensus 106 ~l~~l~~~a~~~~i~iv~G~~~~~~~~~yNt~~vi~p~G~ii~~y~K~~l~~~E~~~f~~~~G~~~~vf~~~~~rigv~I 185 (345)
.++.++++|++++++|++|+++++++++||++++++++| +++.|+|+||++.|..+|. +|+.+.+|+++++|+|++|
T Consensus 59 ~~~~l~~lA~~~~i~iv~G~~~~~~~~~yNs~~vi~~~G-~i~~Y~K~hL~~~E~~~f~--~G~~~~v~~~~~~kiG~~I 135 (279)
T cd07579 59 AVSALRRLARRLRLYLVAGFAEADGDGLYNSAVLVGPEG-LVGTYRKTHLIEPERSWAT--PGDTWPVYDLPLGRVGLLI 135 (279)
T ss_pred HHHHHHHHHHHcCeEEEEeceEccCCcEEEEEEEEeCCe-eEEEEecccCCCcchhhcc--CCCCCeeEEcCceeEEEEE
Confidence 899999999999999999999888889999999999999 6899999999988988887 5567899999999999999
Q ss_pred ecCCCchHHHHHHHHCCCeEEEEcCCCCh-----------------------hhHhhhhhheeeecCeEEEEeCcccccC
Q 019166 186 CWENRMPLLRTAMYAKGIEIYCAPTADSR-----------------------EVWQASMTHIALEGGCFVLSANQFCRRK 242 (345)
Q Consensus 186 C~D~~fpe~~r~~~~~ga~li~~ps~~~~-----------------------~~~~~~~~~rA~en~~~vv~~n~~G~~~ 242 (345)
|||++|||++|.++++|||+|++|+++.. .+|. ++++||+||++||++||++|.
T Consensus 136 CyD~~fPe~~r~~a~~Ga~ii~~psa~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-~~~aRA~EN~~~vv~aN~~g~-- 212 (279)
T cd07579 136 GHDALFPEAGRVLALRGCDLLACPAAIAIPFVGAHAGTSVPQPYPIPTGADPTHWH-LARVRAGENNVYFAFANVPDP-- 212 (279)
T ss_pred eccccCcHHHHHHHHCCCCEEEECCCcCCccccccccccccCCCCCcCccchhHHH-HhHhHHhhCCeEEEEeeccCC--
Confidence 99999999999999999999999998631 4787 689999999999999999987
Q ss_pred CCCCCCCCccCCCcCCCCCCCccccceeEEECCCCccccc----CCCCCceEEEEEechhHHHH
Q 019166 243 DYPPPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAG----PNYDGEALISADLDLGEIAR 302 (345)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~----~~~~~e~~l~~~idl~~~~~ 302 (345)
. ..+.|+|+|++|+|+++.. ++ .+|++++++||++.++.
T Consensus 213 ------------------~--~~~~G~S~ii~P~G~v~~~~~~~~~-~~e~~l~a~id~~~~~~ 255 (279)
T cd07579 213 ------------------A--RGYTGWSGVFGPDTFAFPRQEAAIG-DEEGIAWALIDTSNLDS 255 (279)
T ss_pred ------------------c--cccccccEEECCCeEEcchhhcccC-CCCcEEEEEecchhhcc
Confidence 2 2468999999999999843 44 67889999999999887
No 11
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.3e-48 Score=361.66 Aligned_cols=255 Identities=31% Similarity=0.469 Sum_probs=221.6
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCH
Q 019166 26 RATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGP 105 (345)
Q Consensus 26 rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 105 (345)
|||++|+++..++.+.|++++.+++++|+++|+|||||||++++||.. .+..+...+. ....+++
T Consensus 1 ria~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~-------------~~~~~~~~~~--~~~~~~~ 65 (268)
T cd07580 1 RVACVQFDPRVGDLDANLARSIELIREAADAGANLVVLPELANTGYVF-------------ESRDEAFALA--EEVPDGA 65 (268)
T ss_pred CEEEEEccCccCcHHHHHHHHHHHHHHHHHcCCCEEEcCCcccccCCC-------------CCHHHHHHhh--ccCCCCc
Confidence 699999999889999999999999999999999999999999999973 2322211111 1223456
Q ss_pred HHHHHHHHHHhcCeEEEEeeEEeeCCeeEEEEEEECCCCceEeeeecCCCCccccceeccCCCCC-CCeEEcCCCcEEEE
Q 019166 106 EVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTALERIIWGFGDGST-IPVFETPIGKIGAA 184 (345)
Q Consensus 106 ~l~~l~~~a~~~~i~iv~G~~~~~~~~~yNt~~vi~p~G~ii~~y~K~~l~~~E~~~f~~~~G~~-~~vf~~~~~rigv~ 184 (345)
.++.++++|++++++|++|+++++++++||++++++++|. +..|+|+||+..|..+|.+ |+. +.+|+++++|+|++
T Consensus 66 ~~~~~~~~a~~~~~~i~~G~~~~~~~~~yNs~~vi~~~g~-~~~y~K~~l~~~e~~~f~~--G~~~~~v~~~~~~~ig~~ 142 (268)
T cd07580 66 STRAWAELAAELGLYIVAGFAERDGDRLYNSAVLVGPDGV-IGTYRKAHLWNEEKLLFEP--GDLGLPVFDTPFGRIGVA 142 (268)
T ss_pred hHHHHHHHHHHcCcEEEeecccccCCceEEEEEEECCCCc-EEEEEEecCCchhcceecC--CCCCCceEEcCCCcEEEE
Confidence 8899999999999999999988888899999999999995 8999999999989888874 555 89999999999999
Q ss_pred eecCCCchHHHHHHHHCCCeEEEEcCCCCh---------hhHhhhhhheeeecCeEEEEeCcccccCCCCCCCCCccCCC
Q 019166 185 ICWENRMPLLRTAMYAKGIEIYCAPTADSR---------EVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSGT 255 (345)
Q Consensus 185 IC~D~~fpe~~r~~~~~ga~li~~ps~~~~---------~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~~~~~ 255 (345)
||||++||++.+.++.+|||+|++|++|+. .+|..+.++||+||++||++||++|.
T Consensus 143 IC~D~~fpe~~r~~~~~ga~li~~ps~~~~~~~~~~~~~~~~~~~~~arA~en~~~vv~~n~~G~--------------- 207 (268)
T cd07580 143 ICYDGWFPETFRLLALQGADIVCVPTNWVPMPRPPEGGPPMANILAMAAAHSNGLFIACADRVGT--------------- 207 (268)
T ss_pred EECcccchHHHHHHHHcCCCEEEEcCcccccCCcccccCcHHHHhhHHHHhhCCcEEEEEeeeee---------------
Confidence 999999999999999999999999999741 46888899999999999999999998
Q ss_pred cCCCCCCCccccceeEEECCCCcccccCCC-CCceEEEEEechhHHHHhhhc--CCCCCCCCCccce
Q 019166 256 EQDLTPDSIVCAGGSVIISPSGSVLAGPNY-DGEALISADLDLGEIARAKFD--FDVVGHYSRPEVL 319 (345)
Q Consensus 256 ~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~-~~e~~l~~~idl~~~~~~r~~--~~~~~~~rr~~ly 319 (345)
.++..+.|+|+|++|+|+++++++. .++++++++||++.++.+|.. ++++. +|||++|
T Consensus 208 -----~~~~~~~G~S~ii~p~G~~~~~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~~~-~~r~~~y 268 (268)
T cd07580 208 -----ERGQPFIGQSLIVGPDGWPLAGPASGDEEEILLADIDLTAARRKRIWNSNDVLR-DRRPDLY 268 (268)
T ss_pred -----ccCceEeeeeEEECCCCCeeeecCCCCCCeEEEEEecHHHHHHhhcCCcchhhh-hcCcccC
Confidence 3446789999999999999999864 488999999999999999988 46665 6899987
No 12
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=100.00 E-value=2.1e-48 Score=364.17 Aligned_cols=261 Identities=24% Similarity=0.312 Sum_probs=224.4
Q ss_pred eEEEEEeccC----CCCChHHHHHHHHHHHHHHHh--CCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhc
Q 019166 25 VRATVVQAST----IFYDTPATLGKAERLLAEAAG--YGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHAS 98 (345)
Q Consensus 25 ~rIa~vQ~~~----~~~d~~~n~~~i~~~i~~A~~--~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (345)
++||++|+++ ..+++++|++++.+++++|++ +|+|||||||++++||... . ....+.
T Consensus 1 ~~Ia~~Q~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~gadLvvfPE~~ltGy~~~-------------~----~~~~~~ 63 (291)
T cd07565 1 VGVAVVQYKVPVLHTKEEVLENAERIADMVEGTKRGLPGMDLIVFPEYSTQGLMYD-------------K----WTMDET 63 (291)
T ss_pred CeEEEEecccccccccccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCcccccCCCC-------------c----chhhhh
Confidence 4799999998 467999999999999999986 5999999999999999731 0 112344
Q ss_pred ccCCCCHHHHHHHHHHHhcCeEEEEeeEEeeC---CeeEEEEEEECCCCceEeeeecCCCCccccceeccCCCCC-CCeE
Q 019166 99 AIDVPGPEVERLAAMAGKYKVYLVMGVIERDG---YTLYCTVLFFDSQGHFLGKHRKIMPTALERIIWGFGDGST-IPVF 174 (345)
Q Consensus 99 a~~~~~~~l~~l~~~a~~~~i~iv~G~~~~~~---~~~yNt~~vi~p~G~ii~~y~K~~l~~~E~~~f~~~~G~~-~~vf 174 (345)
++..+++.++.++++|+++++++++|+.++++ +++||++++|+|+|+++++|+|+||+..+. +|. +|+. +.+|
T Consensus 64 a~~~~~~~~~~l~~lA~~~~i~i~~g~~e~~~~~~~~~yNsa~~i~~~G~i~~~YrK~hl~~~~e-~~~--~G~~~~~v~ 140 (291)
T cd07565 64 ACTVPGPETDIFAEACKEAKVWGVFSIMERNPDHGKNPYNTAIIIDDQGEIVLKYRKLHPWVPIE-PWY--PGDLGTPVC 140 (291)
T ss_pred ccCCCChhHHHHHHHHHHCCeEEEEEeeeecCCCCCceEEEEEEECCCCcEEEEEEecccCCCcc-ccc--CCCCCceee
Confidence 55667889999999999999999999887753 689999999999999999999999965433 455 5555 7899
Q ss_pred EcC-CCcEEEEeecCCCchHHHHHHHHCCCeEEEEcCCCC---hhhHhhhhhheeeecCeEEEEeCcccccCCCCCCCCC
Q 019166 175 ETP-IGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADS---REVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 250 (345)
Q Consensus 175 ~~~-~~rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~---~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~ 250 (345)
++. ++|||++||||++|||+.|.++++|||+|++|++++ ..+|..++++||+||++||+.||++|.
T Consensus 141 ~~~~g~riG~~ICyD~~fPe~~r~la~~GAdill~ps~~~~~~~~~w~~~~~aRA~En~~~vv~aN~~G~---------- 210 (291)
T cd07565 141 EGPKGSKIALIICHDGMYPEIARECAYKGAELIIRIQGYMYPAKDQWIITNKANAWCNLMYTASVNLAGF---------- 210 (291)
T ss_pred ECCCCCEEEEEEEcCCCCcHHHHHHHHCCCeEEEECCcCCCCcchHHHHHHHHHHHhcCcEEEEeccccc----------
Confidence 986 559999999999999999999999999999999874 568999999999999999999999998
Q ss_pred ccCCCcCCCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcCCCCCCCCCccceeeeeecCCCCc
Q 019166 251 EFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLSLVVRDHPATP 330 (345)
Q Consensus 251 ~~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~~~~~rr~~ly~~~~~~~~~~~ 330 (345)
.++..++|+|+|+||+|+++++++.+++++++++||++.++..|..+++ +.+||.+.++--..-|
T Consensus 211 ----------~~~~~~~G~S~ivdP~G~ila~~~~~~e~i~~adid~~~~~~~R~~~~~-----~~~~~~~~~~~~~~~~ 275 (291)
T cd07565 211 ----------DGVFSYFGESMIVNFDGRTLGEGGREPDEIVTAELSPSLVRDARKNWGS-----ENNLYKLGHRGYVAVP 275 (291)
T ss_pred ----------CCCceeeeeeEEECCCCCEEEeCCCCCCcEEEEEEcHHHHHHHHhcCCC-----CCcHHHhhhhhhhccC
Confidence 3456899999999999999999987788999999999999999999986 4489988776554444
No 13
>PLN02747 N-carbamolyputrescine amidase
Probab=100.00 E-value=2e-48 Score=365.61 Aligned_cols=275 Identities=26% Similarity=0.420 Sum_probs=230.7
Q ss_pred CCcceEEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhccc
Q 019166 21 SAPTVRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAI 100 (345)
Q Consensus 21 ~~~~~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 100 (345)
|..+||||++|+++. .|.+.|++++.+++++|+++|+|||||||++++||... .. ...+.+.++
T Consensus 3 ~~~~~~va~~Q~~~~-~d~~~N~~~i~~~i~~A~~~gadlvvfPE~~l~g~~~~-------------~~--~~~~~~~~~ 66 (296)
T PLN02747 3 MGRKVVVAALQFACS-DDRAANVDKAERLVREAHAKGANIILIQELFEGYYFCQ-------------AQ--REDFFQRAK 66 (296)
T ss_pred CCcceEEEEEEecCC-CCHHHHHHHHHHHHHHHHHCCCcEEEcccccCCCCCcc-------------cc--ccchhhhcc
Confidence 345699999999975 89999999999999999999999999999999999732 00 011223333
Q ss_pred CCC-CHHHHHHHHHHHhcCeEEEEeeEEeeCCeeEEEEEEECCCCceEeeeecCCCCc----cccceeccCCCC-CCCeE
Q 019166 101 DVP-GPEVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTA----LERIIWGFGDGS-TIPVF 174 (345)
Q Consensus 101 ~~~-~~~l~~l~~~a~~~~i~iv~G~~~~~~~~~yNt~~vi~p~G~ii~~y~K~~l~~----~E~~~f~~~~G~-~~~vf 174 (345)
... ++.++.++++|++++++|++|+++++++++||++++++|+|+++++|+|+||+. .|..+|. +|+ .+.+|
T Consensus 67 ~~~~~~~~~~l~~~a~~~~i~i~~g~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~~~~e~~~~~--~G~~~~~~~ 144 (296)
T PLN02747 67 PYEGHPTIARMQKLAKELGVVIPVSFFEEANNAHYNSIAIIDADGTDLGLYRKSHIPDGPGYQEKFYFN--PGDTGFKVF 144 (296)
T ss_pred cCCCChHHHHHHHHHHHcCeEEEeeeeecCCCceEEEEEEECCCCCCcceEEEEecCCCCCccceeeec--CCCCCCeeE
Confidence 333 478899999999999999999988888999999999999999999999999864 3666676 454 47899
Q ss_pred EcCCCcEEEEeecCCCchHHHHHHHHCCCeEEEEcCCCC----------hhhHhhhhhheeeecCeEEEEeCcccccCCC
Q 019166 175 ETPIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADS----------REVWQASMTHIALEGGCFVLSANQFCRRKDY 244 (345)
Q Consensus 175 ~~~~~rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~----------~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~ 244 (345)
+++++|+|++||||.+||++++.++.+||++|++|++++ ..+|..+.++||++|++||+.+|++|.+. +
T Consensus 145 ~~~~~rig~~IC~D~~fpe~~r~~~~~Ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~en~~~vv~~N~~G~~~-~ 223 (296)
T PLN02747 145 DTKFAKIGVAICWDQWFPEAARAMVLQGAEVLLYPTAIGSEPQDPGLDSRDHWKRVMQGHAGANLVPLVASNRIGTEI-L 223 (296)
T ss_pred EcCCccEEEEEEccccchHHHHHHHHCCCCEEEEeCccCCCCcccccchHHHHHHHHHHHHHHcCCeEEEEecccccc-c
Confidence 999999999999999999999999999999999999862 36899999999999999999999998721 1
Q ss_pred CCCCCCccCCCcCCCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcCCCCCCCCCccceeeeee
Q 019166 245 PPPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLSLVVR 324 (345)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~~~~~rr~~ly~~~~~ 324 (345)
|. +.......|.|+|.|++|+|+++++++.+++++++++||++.++..|..++++. +|||++|..+++
T Consensus 224 ~~-----------~~g~~~~~~~G~S~i~~p~G~vl~~~~~~~e~~~~adid~~~~~~~r~~~~~~~-~~r~~~~~~~~~ 291 (296)
T PLN02747 224 ET-----------EHGPSKITFYGGSFIAGPTGEIVAEADDKAEAVLVAEFDLDQIKSKRASWGVFR-DRRPDLYKVLLT 291 (296)
T ss_pred cc-----------ccCCcCceEeeeeEEECCCCCEeecCCCCCCcEEEEEEcHHHHHHHHHhCCchh-hcChhHHHHHHh
Confidence 10 001225678999999999999999998778999999999999999999998775 799999997665
Q ss_pred cC
Q 019166 325 DH 326 (345)
Q Consensus 325 ~~ 326 (345)
.+
T Consensus 292 ~~ 293 (296)
T PLN02747 292 LD 293 (296)
T ss_pred hc
Confidence 54
No 14
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=4.1e-48 Score=356.32 Aligned_cols=250 Identities=31% Similarity=0.534 Sum_probs=222.7
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCH
Q 019166 26 RATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGP 105 (345)
Q Consensus 26 rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 105 (345)
|||++|+++.++|.+.|++++++++++|+++|+|||||||++++||... +.. ....+.+....++
T Consensus 1 ria~~q~~~~~~d~~~n~~~~~~~i~~a~~~ga~liv~PE~~l~g~~~~-------------~~~--~~~~~~~~~~~~~ 65 (258)
T cd07584 1 KVALIQMDSVLGDVKANLKKAAELCKEAAAEGADLICFPELATTGYRPD-------------LLG--PKLWELSEPIDGP 65 (258)
T ss_pred CEEEEEecCccCCHHHHHHHHHHHHHHHHHcCCCEEEcccccccCCCcc-------------ccc--hhhHhhccCCCCc
Confidence 6999999998899999999999999999999999999999999999732 111 1122344555677
Q ss_pred HHHHHHHHHHhcCeEEEEeeEEeeC--CeeEEEEEEECCCCceEeeeecCCCCccccceeccCCCCCCCeEEcCCCcEEE
Q 019166 106 EVERLAAMAGKYKVYLVMGVIERDG--YTLYCTVLFFDSQGHFLGKHRKIMPTALERIIWGFGDGSTIPVFETPIGKIGA 183 (345)
Q Consensus 106 ~l~~l~~~a~~~~i~iv~G~~~~~~--~~~yNt~~vi~p~G~ii~~y~K~~l~~~E~~~f~~~~G~~~~vf~~~~~rigv 183 (345)
.++.++++|++++++|++|+++.++ +++||++++++|+|+++..|+|+||+..|..+|. +|+.+.+|+++++|+|+
T Consensus 66 ~~~~l~~~a~~~~i~i~~G~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l~~~e~~~~~--~G~~~~~~~~~~~~~g~ 143 (258)
T cd07584 66 TVRLFSELAKELGVYIVCGFVEKGGVPGKVYNSAVVIDPEGESLGVYRKIHLWGLEKQYFR--EGEQYPVFDTPFGKIGV 143 (258)
T ss_pred HHHHHHHHHHHcCeEEEEeehcccCCCCceEEEEEEECCCCCEEeEEEeecCCchhhhhcc--CCCCCeeEEcCCceEEE
Confidence 8999999999999999999987643 6899999999999999999999999988888876 55678999999999999
Q ss_pred EeecCCCchHHHHHHHHCCCeEEEEcCCCC---hhhHhhhhhheeeecCeEEEEeCcccccCCCCCCCCCccCCCcCCCC
Q 019166 184 AICWENRMPLLRTAMYAKGIEIYCAPTADS---REVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSGTEQDLT 260 (345)
Q Consensus 184 ~IC~D~~fpe~~r~~~~~ga~li~~ps~~~---~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~~~~~~~~~~ 260 (345)
+||||++||++.|.++++|+|++++|++|. ...|....++||+||++|++.+|++|.
T Consensus 144 ~IC~D~~fpe~~r~~~~~gadll~~ps~~~~~~~~~~~~~~~~rA~En~~~vv~~n~~g~-------------------- 203 (258)
T cd07584 144 MICYDMGFPEVARILTLKGAEVIFCPSAWREQDADIWDINLPARALENTVFVAAVNRVGN-------------------- 203 (258)
T ss_pred EEEcCccChHHHHHHHHCCCcEEEECCccCCCCchHHHHHHHHHHHhCCcEEEEECcccc--------------------
Confidence 999999999999999999999999999875 468888899999999999999999988
Q ss_pred CCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcCCCCCC
Q 019166 261 PDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGH 312 (345)
Q Consensus 261 ~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~~~~ 312 (345)
.++..+.|+|+|++|+|+++++++.+++++++++||++.++..|..+|++..
T Consensus 204 ~~~~~~~G~S~ii~p~G~il~~~~~~~~~~~~~~id~~~~~~~r~~~p~~~~ 255 (258)
T cd07584 204 EGDLVLFGKSKILNPRGQVLAEASEEAEEILYAEIDLDAIADYRMTLPYLKD 255 (258)
T ss_pred CCCceecceeEEECCCCceeeecCCCCCcEEEEEeCHHHHHHHHhhCchhhh
Confidence 4456789999999999999999987889999999999999999999998874
No 15
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=100.00 E-value=4.1e-48 Score=364.45 Aligned_cols=266 Identities=27% Similarity=0.377 Sum_probs=223.2
Q ss_pred ceEEEEEeccCCCC--ChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccC
Q 019166 24 TVRATVVQASTIFY--DTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAID 101 (345)
Q Consensus 24 ~~rIa~vQ~~~~~~--d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 101 (345)
+||||++|+++... +.++|++++.+++++|+++|+|||||||++++||..... ..+......+.+. .
T Consensus 3 ~~rva~~Q~~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~l~g~~~~~~---------~~~~~~~~~~~~~--~ 71 (302)
T cd07569 3 QVILAAAQMGPIARAETRESVVARLIALLEEAASRGAQLVVFPELALTTFFPRWY---------FPDEAELDSFFET--E 71 (302)
T ss_pred eEEEEEEeeccccccCCHHHHHHHHHHHHHHHHhCCCcEEEcccccccCcccccc---------cCChHHhhhhhhh--c
Confidence 59999999988755 789999999999999999999999999999999862100 1122222233332 2
Q ss_pred CCCHHHHHHHHHHHhcCeEEEEeeEEe-eCC---eeEEEEEEECCCCceEeeeecCCCCc------------cccceecc
Q 019166 102 VPGPEVERLAAMAGKYKVYLVMGVIER-DGY---TLYCTVLFFDSQGHFLGKHRKIMPTA------------LERIIWGF 165 (345)
Q Consensus 102 ~~~~~l~~l~~~a~~~~i~iv~G~~~~-~~~---~~yNt~~vi~p~G~ii~~y~K~~l~~------------~E~~~f~~ 165 (345)
..++.++.+.++|++++++|++|++++ .++ ++||++++|+|+|+++++|+|+|++. .|..+|.
T Consensus 72 ~~~~~~~~l~~~a~~~~i~iv~G~~~~~~~~~~~~~yNsa~~i~~~G~i~~~y~K~~l~~~~e~~p~~~~~~~e~~~~~- 150 (302)
T cd07569 72 MPNPETQPLFDRAKELGIGFYLGYAELTEDGGVKRRFNTSILVDKSGKIVGKYRKVHLPGHKEPEPYRPFQHLEKRYFE- 150 (302)
T ss_pred CCChhHHHHHHHHHHhCeEEEEeceeecCCCCcceeeeEEEEECCCCCEeeeeeEEecCCCcccCcccccccccccccC-
Confidence 557789999999999999999999875 344 89999999999999999999999753 2566665
Q ss_pred CCCC-CCCeEEcCCCcEEEEeecCCCchHHHHHHHHCCCeEEEEcCCCC-------------hhhHhhhhhheeeecCeE
Q 019166 166 GDGS-TIPVFETPIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADS-------------REVWQASMTHIALEGGCF 231 (345)
Q Consensus 166 ~~G~-~~~vf~~~~~rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~-------------~~~~~~~~~~rA~en~~~ 231 (345)
+|+ .+.+|+++++|||++||||.+|||++|.++.+|||+|++|+++. ..+|...+++||+||++|
T Consensus 151 -~G~~~~~v~~~~~~rig~~IC~D~~fpe~~r~~a~~Ga~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~arA~en~~~ 229 (302)
T cd07569 151 -PGDLGFPVFRVPGGIMGMCICNDRRWPETWRVMGLQGVELVLLGYNTPTHNPPAPEHDHLRLFHNLLSMQAGAYQNGTW 229 (302)
T ss_pred -CCCCCCceEecCCceEEEEEeeccccchHHHHHHHCCCcEEEeecCCcccCCCccccchhhHHHHHHHHhhhhhcccce
Confidence 556 78899999999999999999999999999999999999976541 136777789999999999
Q ss_pred EEEeCcccccCCCCCCCCCccCCCcCCCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhc-CCCC
Q 019166 232 VLSANQFCRRKDYPPPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFD-FDVV 310 (345)
Q Consensus 232 vv~~n~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~-~~~~ 310 (345)
|+.+|++|. .++..+.|+|.|++|+|+++++++.+++++++++||++.++..|.. ++++
T Consensus 230 vv~~n~~G~--------------------~~~~~~~G~S~ii~p~G~vla~~~~~~e~~~~a~id~~~~~~~r~~~~~~~ 289 (302)
T cd07569 230 VVAAAKAGM--------------------EDGCDLIGGSCIVAPTGEIVAQATTLEDEVIVADCDLDLCREGRETVFNFA 289 (302)
T ss_pred EEEeecccc--------------------CCCceEecceEEECCCCCEEEecCCCCCcEEEEEecHHHhhhcccccCcch
Confidence 999999998 3456889999999999999999987789999999999999999995 7776
Q ss_pred CCCCCccceeeee
Q 019166 311 GHYSRPEVLSLVV 323 (345)
Q Consensus 311 ~~~rr~~ly~~~~ 323 (345)
. +||||+|+.++
T Consensus 290 ~-~~r~~~y~~~~ 301 (302)
T cd07569 290 R-HRRPEHYGLIA 301 (302)
T ss_pred h-hcCHHHHhhhh
Confidence 6 68999998653
No 16
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=3.6e-48 Score=357.00 Aligned_cols=255 Identities=28% Similarity=0.425 Sum_probs=220.9
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCC-CC
Q 019166 26 RATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDV-PG 104 (345)
Q Consensus 26 rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~ 104 (345)
|||++|+++.++|++.|++++.+++++|. +|||||||++++||.. ........+ ++.. ++
T Consensus 1 kia~~Q~~~~~~d~~~N~~~~~~~i~~a~---adlvvfPE~~l~gy~~-------------~~~~~~~~~---~~~~~~~ 61 (259)
T cd07577 1 KVGYVQFNPKFGEVEKNLKKVESLIKGVE---ADLIVLPELFNTGYAF-------------TSKEEVASL---AESIPDG 61 (259)
T ss_pred CEEEEEccCccCCHHHHHHHHHHHHHHhC---CCEEEcccccccCCCc-------------CCHHHHHHh---hcccCCC
Confidence 69999999988999999999999999874 9999999999999983 222222222 3333 56
Q ss_pred HHHHHHHHHHHhcCeEEEEeeEEeeCCeeEEEEEEECCCCceEeeeecCCCCccccceeccCCCC-CCCeEEcCCCcEEE
Q 019166 105 PEVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTALERIIWGFGDGS-TIPVFETPIGKIGA 183 (345)
Q Consensus 105 ~~l~~l~~~a~~~~i~iv~G~~~~~~~~~yNt~~vi~p~G~ii~~y~K~~l~~~E~~~f~~~~G~-~~~vf~~~~~rigv 183 (345)
++++.++++|++++++|++|+++++++++||++++++++| +++.|+|+||+..|..+|. +|+ .+.+|+++++|+|+
T Consensus 62 ~~~~~l~~~a~~~~i~ii~G~~~~~~~~~yNs~~vi~~~G-i~~~y~K~~l~~~e~~~~~--~G~~~~~~~~~~~~~ig~ 138 (259)
T cd07577 62 PTTRFLQELARETGAYIVAGLPERDGDKFYNSAVVVGPEG-YIGIYRKTHLFYEEKLFFE--PGDTGFRVFDIGDIRIGV 138 (259)
T ss_pred hHHHHHHHHHHHhCcEEEecceeccCCceEEEEEEECCCc-cEeeEeeccCChhhhcccc--CCCCCCceEEeCCcEEEE
Confidence 8899999999999999999999888889999999999999 8999999999988888876 555 68999999999999
Q ss_pred EeecCCCchHHHHHHHHCCCeEEEEcCCCChhhHhhhhhheeeecCeEEEEeCcccccCCCCCCCCCccCCCcCCCCCCC
Q 019166 184 AICWENRMPLLRTAMYAKGIEIYCAPTADSREVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSGTEQDLTPDS 263 (345)
Q Consensus 184 ~IC~D~~fpe~~r~~~~~ga~li~~ps~~~~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~~~~~~~~~~~~~ 263 (345)
+||||.+|||++|.++++|||+|++|+++....|..++++||+||++|+++||++|.+. ...++
T Consensus 139 ~IC~D~~fpe~~r~~~~~Gadli~~ps~~~~~~~~~~~~~rA~en~~~vv~~n~~G~~~----------------~~~~~ 202 (259)
T cd07577 139 MICFDWYFPEAARTLALKGADIIAHPANLVLPYCPKAMPIRALENRVFTITANRIGTEE----------------RGGET 202 (259)
T ss_pred EEEcCcccchHHHHHHHcCCCEEEECCccCCchhhhhhhHhhhhcCceEEEEecCcccC----------------CCCCC
Confidence 99999999999999999999999999998777888889999999999999999999821 01245
Q ss_pred ccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhh--hcCCCCCCCCCccce
Q 019166 264 IVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAK--FDFDVVGHYSRPEVL 319 (345)
Q Consensus 264 ~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r--~~~~~~~~~rr~~ly 319 (345)
..+.|+|+|++|+|+++++++.++++++++++|++.++..| ..++.+. +|||++|
T Consensus 203 ~~~~G~S~i~~p~G~i~~~~~~~~e~~~~~~id~~~~~~~~~~~~~~~~~-~~r~~~~ 259 (259)
T cd07577 203 LRFIGKSQITSPKGEVLARAPEDGEEVLVAEIDPRLARDKRINEENDIFK-DRRPEFY 259 (259)
T ss_pred ceEeeeeEEECCCCCEEeecCCCCCcEEEEEEchHHhhcccccccCchhh-hcCcccC
Confidence 67899999999999999999878899999999999988755 5677765 5788887
No 17
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=7.4e-48 Score=353.60 Aligned_cols=247 Identities=30% Similarity=0.449 Sum_probs=219.5
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCH
Q 019166 26 RATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGP 105 (345)
Q Consensus 26 rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 105 (345)
|||++|+++...|++.|++++.+++++|+++|+|||||||++++||.. .+.. ..+....++
T Consensus 1 rva~~Q~~~~~~d~~~n~~~i~~~i~~A~~~g~dlvv~PE~~l~g~~~-------------~~~~------~~~~~~~~~ 61 (253)
T cd07583 1 KIALIQLDIVWGDPEANIERVESLIEEAAAAGADLIVLPEMWNTGYFL-------------DDLY------ELADEDGGE 61 (253)
T ss_pred CEEEEEeecCcCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccCCCCCh-------------hhHH------hhhcccCch
Confidence 699999999889999999999999999999999999999999999972 1211 113455678
Q ss_pred HHHHHHHHHHhcCeEEEEeeE-EeeCCeeEEEEEEECCCCceEeeeecCCCCc--cccceeccCCCCCCCeEEcCCCcEE
Q 019166 106 EVERLAAMAGKYKVYLVMGVI-ERDGYTLYCTVLFFDSQGHFLGKHRKIMPTA--LERIIWGFGDGSTIPVFETPIGKIG 182 (345)
Q Consensus 106 ~l~~l~~~a~~~~i~iv~G~~-~~~~~~~yNt~~vi~p~G~ii~~y~K~~l~~--~E~~~f~~~~G~~~~vf~~~~~rig 182 (345)
.++.++++|++++++|++|+. +.+++++||++++++|+|+++..|+|+||.+ .|..+|. +|+.+.+|+++++|+|
T Consensus 62 ~~~~l~~~a~~~~~~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~~~e~~~~~--~G~~~~v~~~~~~rig 139 (253)
T cd07583 62 TVSFLSELAKKHGVNIVAGSVAEKEGGKLYNTAYVIDPDGELIATYRKIHLFGLMGEDKYLT--AGDELEVFELDGGKVG 139 (253)
T ss_pred HHHHHHHHHHHcCcEEEeceEEecCCCcEEEEEEEECCCCcEEEEEeeeeCCCCcCchhhcc--CCCCceEEEeCCeEEE
Confidence 999999999999999999976 5567899999999999999999999999886 5777776 5567899999999999
Q ss_pred EEeecCCCchHHHHHHHHCCCeEEEEcCCCC---hhhHhhhhhheeeecCeEEEEeCcccccCCCCCCCCCccCCCcCCC
Q 019166 183 AAICWENRMPLLRTAMYAKGIEIYCAPTADS---REVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSGTEQDL 259 (345)
Q Consensus 183 v~IC~D~~fpe~~r~~~~~ga~li~~ps~~~---~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~~~~~~~~~ 259 (345)
++||||.+|||+.|.++++|||+|++|++|. ..+|+.+.++||+||++|++++|++|.
T Consensus 140 ~~IC~D~~~pe~~r~~~~~ga~ll~~ps~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~G~------------------- 200 (253)
T cd07583 140 LFICYDLRFPELFRKLALEGAEILFVPAEWPAARIEHWRTLLRARAIENQAFVVACNRVGT------------------- 200 (253)
T ss_pred EEEEeccccHHHHHHHHHcCCcEEEECCCCCCCchHHHHHHHHHHHHHhCCEEEEEcCccc-------------------
Confidence 9999999999999999999999999999984 568998999999999999999999998
Q ss_pred CCCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcCCCCCCCCC
Q 019166 260 TPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSR 315 (345)
Q Consensus 260 ~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~~~~~rr 315 (345)
.++..|.|.|+|++|+|+++++++. ++++++++||++.++.+|..++++. +||
T Consensus 201 -~~~~~~~G~S~ii~p~G~il~~~~~-~~~~~~~~i~l~~~~~~r~~~~~~~-~~~ 253 (253)
T cd07583 201 -DGGNEFGGHSMVIDPWGEVLAEAGE-EEEILTAEIDLEEVAEVRKKIPVFK-DRR 253 (253)
T ss_pred -CCCceecceeEEECCCchhheecCC-CceEEEEEecHHHHHHHHHhCCchh-hcC
Confidence 3455789999999999999999885 8899999999999999999998775 343
No 18
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=100.00 E-value=5e-48 Score=360.57 Aligned_cols=264 Identities=30% Similarity=0.475 Sum_probs=227.9
Q ss_pred eEEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhccc-CCC
Q 019166 25 VRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAI-DVP 103 (345)
Q Consensus 25 ~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~ 103 (345)
||||++|+++. .|++.|++++.+++++|+++|+|||||||++++||... +. ...+.+.++ ...
T Consensus 1 ~~ia~~Q~~~~-~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~g~~~~-------------~~--~~~~~~~~~~~~~ 64 (284)
T cd07573 1 VTVALVQMACS-EDPEANLAKAEELVREAAAQGAQIVCLQELFETPYFCQ-------------EE--DEDYFDLAEPPIP 64 (284)
T ss_pred CEEEEEEeecc-CCHHHHHHHHHHHHHHHHHCCCcEEEccccccCCCCcc-------------cc--cchhHHhccccCC
Confidence 79999999987 89999999999999999999999999999999999732 11 012234455 556
Q ss_pred CHHHHHHHHHHHhcCeEEEEeeEEee-CCeeEEEEEEECCCCceEeeeecCCCCc----cccceeccCCCC-CCCeEEcC
Q 019166 104 GPEVERLAAMAGKYKVYLVMGVIERD-GYTLYCTVLFFDSQGHFLGKHRKIMPTA----LERIIWGFGDGS-TIPVFETP 177 (345)
Q Consensus 104 ~~~l~~l~~~a~~~~i~iv~G~~~~~-~~~~yNt~~vi~p~G~ii~~y~K~~l~~----~E~~~f~~~~G~-~~~vf~~~ 177 (345)
++.++.+.++|++++++|++|+.++. ++++||++++++|+|+++.+|+|.|++. .|..+|. +|+ .+.+|+++
T Consensus 65 ~~~~~~l~~la~~~~i~iv~g~~~~~~~~~~yNs~~v~~~~G~i~~~y~K~~l~~~~~~~e~~~~~--~G~~~~~~~~~~ 142 (284)
T cd07573 65 GPTTARFQALAKELGVVIPVSLFEKRGNGLYYNSAVVIDADGSLLGVYRKMHIPDDPGYYEKFYFT--PGDTGFKVFDTR 142 (284)
T ss_pred CHHHHHHHHHHHHCCEEEEecceeeCCCCcEEEEEEEECCCCCEEeEEeeeccCCCCcccccceec--CCCCCCceEecC
Confidence 78899999999999999999998775 4689999999999999999999999864 3666775 555 68899999
Q ss_pred CCcEEEEeecCCCchHHHHHHHHCCCeEEEEcCCCC------------hhhHhhhhhheeeecCeEEEEeCcccccCCCC
Q 019166 178 IGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADS------------REVWQASMTHIALEGGCFVLSANQFCRRKDYP 245 (345)
Q Consensus 178 ~~rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~------------~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~ 245 (345)
++|+|++||||.+||+++|.++.+|||+|++|++++ ..+|..++++||+||++|++.||++|...
T Consensus 143 ~~~ig~~IC~D~~fpe~~r~~~~~gadlil~ps~~~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~--- 219 (284)
T cd07573 143 YGRIGVLICWDQWFPEAARLMALQGAEILFYPTAIGSEPQEPPEGLDQRDAWQRVQRGHAIANGVPVAAVNRVGVEG--- 219 (284)
T ss_pred CceEEEEEeccccchHHHHHHHHCCCCEEEecCcccCCCCCccccCCchHHHHHHHHHHHHHcCceEEEeccccccC---
Confidence 999999999999999999999999999999999862 25788889999999999999999999820
Q ss_pred CCCCCccCCCcCCCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcCCCCCCCCCccceeeee
Q 019166 246 PPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLSLVV 323 (345)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~~~~~rr~~ly~~~~ 323 (345)
+ +..+..|.|+|+|++|+|+++++++.+++++++++||++.++..|..++++. +|||++|+.+.
T Consensus 220 ------------~-~~~~~~~~G~S~i~~p~G~i~~~~~~~~~~v~~a~id~~~~~~~r~~~~~~~-~~~~~~~~~~~ 283 (284)
T cd07573 220 ------------D-PGSGITFYGSSFIADPFGEILAQASRDEEEILVAEFDLDEIEEVRRAWPFFR-DRRPDLYGALT 283 (284)
T ss_pred ------------C-CCCCceeeceeEEECCCCCeeeccCCCCCcEEEEEecHHHHHHHHhhChhhh-hcChhhhhhhh
Confidence 0 0135789999999999999999998789999999999999999999998775 68999998653
No 19
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.5e-47 Score=353.16 Aligned_cols=252 Identities=32% Similarity=0.464 Sum_probs=223.3
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCH
Q 019166 26 RATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGP 105 (345)
Q Consensus 26 rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 105 (345)
|||++|+++...|++.|++++++++++|+++|+|||||||++++||... +... ..+....++
T Consensus 1 ~ia~~Q~~~~~~~~~~n~~~i~~~i~~a~~~gadliv~PE~~l~g~~~~-------------~~~~-----~~~~~~~~~ 62 (261)
T cd07585 1 RIALVQFEARVGDKARNLAVIARWTRKAAAQGAELVCFPEMCITGYTHV-------------RALS-----REAEVPDGP 62 (261)
T ss_pred CEEEEEeecCCCCHHHHHHHHHHHHHHHHHcCCCEEEecccccccccCC-------------cccc-----hhcccCCCh
Confidence 6999999998889999999999999999999999999999999999832 1110 012344567
Q ss_pred HHHHHHHHHHhcCeEEEEeeEEeeCCeeEEEEEEECCCCceEeeeecCCCCccccceeccCCCCCCCeEEcCCCcEEEEe
Q 019166 106 EVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTALERIIWGFGDGSTIPVFETPIGKIGAAI 185 (345)
Q Consensus 106 ~l~~l~~~a~~~~i~iv~G~~~~~~~~~yNt~~vi~p~G~ii~~y~K~~l~~~E~~~f~~~~G~~~~vf~~~~~rigv~I 185 (345)
.++.++++|++++++|++|+++++++++||++++|+++|. ++.|+|+||++.|..+|. +|+.+.+|+++++|+|++|
T Consensus 63 ~~~~l~~~a~~~~~~i~~G~~~~~~~~~yNs~~vi~~~g~-i~~y~K~~l~~~E~~~~~--~G~~~~v~~~~~~rig~~I 139 (261)
T cd07585 63 STQALSDLARRYGLTILAGLIEKAGDRPYNTYLVCLPDGL-VHRYRKLHLFRREHPYIA--AGDEYPVFATPGVRFGILI 139 (261)
T ss_pred HHHHHHHHHHHcCcEEEEeccccCCCceeEEEEEECCCCc-EeEEeeecCCccccceEc--CCCCCceEEcCCceEEEEE
Confidence 8999999999999999999998888899999999999997 689999999999999887 5667899999999999999
Q ss_pred ecCCCchHHHHHHHHCCCeEEEEcCCCC-------hhhHhhhhhheeeecCeEEEEeCcccccCCCCCCCCCccCCCcCC
Q 019166 186 CWENRMPLLRTAMYAKGIEIYCAPTADS-------REVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSGTEQD 258 (345)
Q Consensus 186 C~D~~fpe~~r~~~~~ga~li~~ps~~~-------~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~~~~~~~~ 258 (345)
|||.+||++.|.++++|||+|++|++++ .+.|...+++||+||++|++++|++|.
T Consensus 140 C~D~~~pe~~r~l~~~gadlil~p~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~~n~~g~------------------ 201 (261)
T cd07585 140 CYDNHFPENVRATALLGAEILFAPHATPGTTSPKGREWWMRWLPARAYDNGVFVAACNGVGR------------------ 201 (261)
T ss_pred EcCCcCcHHHHHHHHCCCCEEEECCccCCCCCcchHHHHHHHhHHHHhhcCeEEEEeccccc------------------
Confidence 9999999999999999999999998764 357888899999999999999999998
Q ss_pred CCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhc--CCCCCCCCCccce
Q 019166 259 LTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFD--FDVVGHYSRPEVL 319 (345)
Q Consensus 259 ~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~--~~~~~~~rr~~ly 319 (345)
.++..+.|.|+|++|+|+++++++.+++++++++||++.++..|.. .+++. +||+++|
T Consensus 202 --~~~~~~~G~S~i~~p~G~v~~~~~~~~e~~l~~~id~~~~~~~r~~~~~~~~~-~~~~~~~ 261 (261)
T cd07585 202 --DGGEVFPGGAMILDPYGRVLAETTSGGDGMVVADLDLDLINTVRGRRWISFLR-ARRPELY 261 (261)
T ss_pred --CCCceecceEEEECCCCCEEeccCCCCCcEEEEEecHHHHHHhhccccCcccc-ccCccCC
Confidence 3456789999999999999999988899999999999999999986 45565 5888887
No 20
>PLN02798 nitrilase
Probab=100.00 E-value=2.1e-47 Score=357.03 Aligned_cols=259 Identities=26% Similarity=0.433 Sum_probs=222.3
Q ss_pred CCCCcceEEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcC-CCCCCCCCCcccccccCCccchHHHHHHHh
Q 019166 19 DSSAPTVRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAF-IGGYPRGANFGVTIGNRTAKGKEEFRKYHA 97 (345)
Q Consensus 19 ~~~~~~~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~-l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (345)
.++..+||||++|+++. .|.+.|++++++++++|+++|+|||||||++ ++||.. .+ ..+
T Consensus 5 ~~~~~~~ria~~Q~~~~-~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~~g~~~-------------~~------~~~ 64 (286)
T PLN02798 5 ATAGSSVRVAVAQMTST-NDLAANFATCSRLAKEAAAAGAKLLFLPECFSFIGDKD-------------GE------SLA 64 (286)
T ss_pred ccccCccEEEEEEccCC-CCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccccCcCc-------------hh------hhh
Confidence 35667899999999964 8999999999999999999999999999984 567651 11 122
Q ss_pred cccCCCCHHHHHHHHHHHhcCeEEEEeeE-Ee--eCCeeEEEEEEECCCCceEeeeecCCCCc---------cccceecc
Q 019166 98 SAIDVPGPEVERLAAMAGKYKVYLVMGVI-ER--DGYTLYCTVLFFDSQGHFLGKHRKIMPTA---------LERIIWGF 165 (345)
Q Consensus 98 ~a~~~~~~~l~~l~~~a~~~~i~iv~G~~-~~--~~~~~yNt~~vi~p~G~ii~~y~K~~l~~---------~E~~~f~~ 165 (345)
.++...++.++.++++|++++++|++|.. ++ +++++||++++|+|+|++++.|+|+||+. .|..+|.
T Consensus 65 ~~~~~~~~~~~~l~~~A~~~~i~iv~G~~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L~~~~~p~~~~~~e~~~~~- 143 (286)
T PLN02798 65 IAEPLDGPIMQRYRSLARESGLWLSLGGFQEKGPDDSHLYNTHVLIDDSGEIRSSYRKIHLFDVDVPGGPVLKESSFTA- 143 (286)
T ss_pred hcccCCCHHHHHHHHHHHHcCeEEEEeeeEcccCCCCceEEEEEEECCCCCEEEEEEEEEeccccCCCCCccccccccc-
Confidence 34455678899999999999999999854 44 46789999999999999999999999853 2666665
Q ss_pred CCCCCCCeEEcCCCcEEEEeecCCCchHHHHHHH-HCCCeEEEEcCCCC----hhhHhhhhhheeeecCeEEEEeCcccc
Q 019166 166 GDGSTIPVFETPIGKIGAAICWENRMPLLRTAMY-AKGIEIYCAPTADS----REVWQASMTHIALEGGCFVLSANQFCR 240 (345)
Q Consensus 166 ~~G~~~~vf~~~~~rigv~IC~D~~fpe~~r~~~-~~ga~li~~ps~~~----~~~~~~~~~~rA~en~~~vv~~n~~G~ 240 (345)
+|+.+.+|+++++|+|++||||.+||++.|.++ ++|||+|++|++++ ..+|+.++++||+||++|++++|++|.
T Consensus 144 -~G~~~~v~~~~~~k~g~~IC~D~~fpe~~r~~a~~~Gadlil~ps~~~~~~~~~~~~~~~~~rAien~~~vv~an~~G~ 222 (286)
T PLN02798 144 -PGKTIVAVDSPVGRLGLTVCYDLRFPELYQQLRFEHGAQVLLVPSAFTKPTGEAHWEVLLRARAIETQCYVIAAAQAGK 222 (286)
T ss_pred -CCCeeeEEecCCceEEEEEEEcccChHHHHHHHHhCCCcEEEECCcCCCCCcHHHHHHHHHHHHHHhCCEEEEecccCc
Confidence 566789999999999999999999999999998 99999999999875 358998999999999999999999987
Q ss_pred cCCCCCCCCCccCCCcCCCCCCCccccceeEEECCCCcccccCCC-CCceEEEEEechhHHHHhhhcCCCCCCCCCccce
Q 019166 241 RKDYPPPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNY-DGEALISADLDLGEIARAKFDFDVVGHYSRPEVL 319 (345)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~-~~e~~l~~~idl~~~~~~r~~~~~~~~~rr~~ly 319 (345)
. ..+..++|+|+|++|+|+++++++. +++++++++||++.++..|..++++. +||||+|
T Consensus 223 ~-------------------~~~~~~~G~S~ii~p~G~il~~~~~~~~e~~~~a~id~~~~~~~r~~~~~~~-~~~~~~~ 282 (286)
T PLN02798 223 H-------------------NEKRESYGHALIIDPWGTVVARLPDRLSTGIAVADIDLSLLDSVRTKMPIAE-HRRSLEF 282 (286)
T ss_pred C-------------------CCCceeeeeeEEECCCccchhhcCCCCCCCEEEEEecHHHHHHHHHhCcchh-ccchhhh
Confidence 2 3346789999999999999999873 57899999999999999999999876 5788876
No 21
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=6.5e-47 Score=348.51 Aligned_cols=253 Identities=26% Similarity=0.424 Sum_probs=215.3
Q ss_pred eEEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCC
Q 019166 25 VRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPG 104 (345)
Q Consensus 25 ~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 104 (345)
+|||++|+++..+|.+.|++++.+++++|+++|+|||||||++++||.. .+..+...+. +..++
T Consensus 1 ~ria~~Q~~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l~gy~~-------------~~~~~~~~~~---~~~~~ 64 (258)
T cd07578 1 YKAAAIQFEPEMGEKERNIERLLALCEEAARAGARLIVTPEMATTGYCW-------------YDRAEIAPFV---EPIPG 64 (258)
T ss_pred CeEEEEEecCccccHHHHHHHHHHHHHHHHhCCCCEEEcccccccCCCc-------------CCHHHhhhhc---ccCCC
Confidence 5899999999889999999999999999999999999999999999982 2333333332 24456
Q ss_pred HHHHHHHHHHHhcCeEEEEeeEEee--CCeeEEEEEEECCCCceEeeeecCCCCccccceeccCCCC-CCCeEEcCCCcE
Q 019166 105 PEVERLAAMAGKYKVYLVMGVIERD--GYTLYCTVLFFDSQGHFLGKHRKIMPTALERIIWGFGDGS-TIPVFETPIGKI 181 (345)
Q Consensus 105 ~~l~~l~~~a~~~~i~iv~G~~~~~--~~~~yNt~~vi~p~G~ii~~y~K~~l~~~E~~~f~~~~G~-~~~vf~~~~~ri 181 (345)
+.++.++++|++++++|++|++++. ++++||++++|+|+| +++.|+|+||+..|..+|.+ |+ .+.+|+++++|+
T Consensus 65 ~~~~~l~~~a~~~~i~ii~G~~~~~~~~~~~yNs~~vi~~~g-~~~~y~K~h~~~~e~~~~~~--g~~~~~v~~~~~~ri 141 (258)
T cd07578 65 PTTARFAELAREHDCYIVVGLPEVDSRSGIYYNSAVLIGPSG-VIGRHRKTHPYISEPKWAAD--GDLGHQVFDTEIGRI 141 (258)
T ss_pred HHHHHHHHHHHHcCcEEEEecceecCCCCCeeEEEEEECCCC-cEEeEeeecCCcccccccCC--CCCCceEEECCCccE
Confidence 7899999999999999999998764 468999999999999 78999999998888888864 44 478999999999
Q ss_pred EEEeecCCCchHHHHHHHHCCCeEEEEcCCCChhh-HhhhhhheeeecCeEEEEeCcccccCCCCCCCCCccCCCcCCCC
Q 019166 182 GAAICWENRMPLLRTAMYAKGIEIYCAPTADSREV-WQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSGTEQDLT 260 (345)
Q Consensus 182 gv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~~~~-~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~~~~~~~~~~ 260 (345)
|++||||++|||++|.++.+||+++++|++|.... ......+||+||++|++++|++|.
T Consensus 142 g~~IC~D~~fpe~~r~~~~~ga~ll~~ps~~~~~~~~~~~~~~rA~en~~~vv~an~~G~-------------------- 201 (258)
T cd07578 142 ALLICMDIHFFETARLLALGGADVICHISNWLAERTPAPYWINRAFENGCYLIESNRWGL-------------------- 201 (258)
T ss_pred EEEEeeCCCchHHHHHHHHcCCCEEEEcCCCCCCCCcchHHHHhhhcCCeEEEEecceec--------------------
Confidence 99999999999999999999999999999985211 001124799999999999999998
Q ss_pred CCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhc-CCCCCCCCCccc
Q 019166 261 PDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFD-FDVVGHYSRPEV 318 (345)
Q Consensus 261 ~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~-~~~~~~~rr~~l 318 (345)
.++..+.|+|+|++|+|++++.++ .++++++++||++.++..|.. ++++. .|||++
T Consensus 202 ~~~~~~~G~S~ii~p~G~il~~~~-~~e~~~~a~id~~~~~~~r~~~~~~~~-~~~~~~ 258 (258)
T cd07578 202 ERGVQFSGGSCIIEPDGTIQASID-SGDGVALGEIDLDRARHRQFPGELVFT-ARRPEL 258 (258)
T ss_pred cCCcceeeEEEEECCCCcEeeccC-CCCceEEEEecchHhhhhhcccchhhh-hhccCC
Confidence 345678999999999999999887 567999999999999999975 67665 688764
No 22
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=9.7e-47 Score=351.25 Aligned_cols=267 Identities=26% Similarity=0.405 Sum_probs=216.2
Q ss_pred eEEEEEeccCCC-CChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCC
Q 019166 25 VRATVVQASTIF-YDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVP 103 (345)
Q Consensus 25 ~rIa~vQ~~~~~-~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 103 (345)
||||++|+++.+ .|.++|++++++++++|+++|+|||||||++++||... . +.+...............
T Consensus 1 m~va~~Q~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~~~g~~~~---------~-~~~~~~~~~~~~~~~~~~ 70 (280)
T cd07574 1 VRVAAAQYPLRRYASFEEFAAKVEYWVAEAAGYGADLLVFPEYFTMELLSL---------L-PEAIDGLDEAIRALAALT 70 (280)
T ss_pred CeeEEEEccCcCCCCHHHHHHHHHHHHHHHHHcCCCEEECchHhHHHHHHh---------C-CcccccHHHHHHHHHHHH
Confidence 799999999875 79999999999999999999999999999999885310 0 111110011111111233
Q ss_pred CHHHHHHHHHHHhcCeEEEEeeE-EeeCCeeEEEEEEECCCCceEeeeecCCCCccccceeccCCCCCCCeEEcCCCcEE
Q 019166 104 GPEVERLAAMAGKYKVYLVMGVI-ERDGYTLYCTVLFFDSQGHFLGKHRKIMPTALERIIWGFGDGSTIPVFETPIGKIG 182 (345)
Q Consensus 104 ~~~l~~l~~~a~~~~i~iv~G~~-~~~~~~~yNt~~vi~p~G~ii~~y~K~~l~~~E~~~f~~~~G~~~~vf~~~~~rig 182 (345)
+++++.++++|++++++|++|+. +++++++||++++++|+|.+ +.|+|.||++.|...|...+|+++.+|+++++|||
T Consensus 71 ~~~~~~l~~~a~~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~v-~~y~K~~l~~~e~~~~~~~~G~~~~v~~~~~~~ig 149 (280)
T cd07574 71 PDYVALFSELARKYGINIIAGSMPVREDGRLYNRAYLFGPDGTI-GHQDKLHMTPFEREEWGISGGDKLKVFDTDLGKIG 149 (280)
T ss_pred HHHHHHHHHHHHHhCCEEEecceEEcCCCCeEEEEEEECCCCCE-EEEeeeccCchhhhcccccCCCCceEEecCCccEE
Confidence 57899999999999999999974 56778999999999999986 99999999886544333457778899999999999
Q ss_pred EEeecCCCchHHHHHHHHCCCeEEEEcCCCC----hhhHhhhhhheeeecCeEEEEeCcccccCCCCCCCCCccCCCcCC
Q 019166 183 AAICWENRMPLLRTAMYAKGIEIYCAPTADS----REVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSGTEQD 258 (345)
Q Consensus 183 v~IC~D~~fpe~~r~~~~~ga~li~~ps~~~----~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~~~~~~~~ 258 (345)
++||||++||++.|.++.+|||+|++|++++ ..+|...+++||+||++|+++||++|...
T Consensus 150 ~~IC~D~~fpe~~r~l~~~ga~ii~~ps~~~~~~~~~~~~~~~~arA~en~~~vv~an~~G~~~---------------- 213 (280)
T cd07574 150 ILICYDSEFPELARALAEAGADLLLVPSCTDTRAGYWRVRIGAQARALENQCYVVQSGTVGNAP---------------- 213 (280)
T ss_pred EEEecccccHHHHHHHHHcCCCEEEECCcCCccccHHHHHHHHHHHHHhhCceEEEeCCCCCCC----------------
Confidence 9999999999999999999999999999864 23566668999999999999999999821
Q ss_pred CCCCCccccceeEEECCC------CcccccCCCCCceEEEEEechhHHHHhhhcCCC-CCCCCCccc
Q 019166 259 LTPDSIVCAGGSVIISPS------GSVLAGPNYDGEALISADLDLGEIARAKFDFDV-VGHYSRPEV 318 (345)
Q Consensus 259 ~~~~~~~~~G~S~ii~p~------G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~-~~~~rr~~l 318 (345)
....+..++|+|+|++|+ |+++++++.+++++++++||++.++..|..++. ..++|||||
T Consensus 214 ~~~~~~~~~G~S~i~~P~~~~~~~g~~l~~~~~~~e~~~~a~iD~~~~~~~R~~~~~~~~~~~~~~~ 280 (280)
T cd07574 214 WSPAVDVNYGQAAVYTPCDFGFPEDGILAEGEPNTEGWLIADLDLEALRRLREEGSVRNLRDWREDL 280 (280)
T ss_pred CccccccccccceeecCCCCCCCCCCeEeecCCCCCceEEEecCHHHHHHHhhcCCccCcccCcccC
Confidence 001245789999999996 889998876779999999999999999999764 334688875
No 23
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=1.6e-46 Score=347.69 Aligned_cols=251 Identities=26% Similarity=0.445 Sum_probs=218.3
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCH
Q 019166 26 RATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGP 105 (345)
Q Consensus 26 rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 105 (345)
|||++|+++..+|++.|++++.+++++|+++|+|||||||++++||... +. ..+.+....++
T Consensus 1 kia~~q~~~~~~~~~~n~~~~~~~i~~A~~~ga~liv~PE~~~~g~~~~-------------~~-----~~~~~~~~~~~ 62 (269)
T cd07586 1 RVAIAQIDPVLGDVEENLEKHLEIIETARERGADLVVFPELSLTGYNLG-------------DL-----VYEVAMHADDP 62 (269)
T ss_pred CEEEEecCCccCcHHHHHHHHHHHHHHHHHcCCCEEEecchhccCCCch-------------hh-----hhhhhcccchH
Confidence 6999999998899999999999999999999999999999999999831 11 12223334456
Q ss_pred HHHHHHHHHHhcCeEEEEeeEEee-CCeeEEEEEEECCCCceEeeeecCCCCc----cccceeccCCCCCCCeEEcCCCc
Q 019166 106 EVERLAAMAGKYKVYLVMGVIERD-GYTLYCTVLFFDSQGHFLGKHRKIMPTA----LERIIWGFGDGSTIPVFETPIGK 180 (345)
Q Consensus 106 ~l~~l~~~a~~~~i~iv~G~~~~~-~~~~yNt~~vi~p~G~ii~~y~K~~l~~----~E~~~f~~~~G~~~~vf~~~~~r 180 (345)
.++.|+++++ ++.|++|++++. ++++||+++++ ++|++++.|+|+|+.. .|..+|. +|+.+.+|+++++|
T Consensus 63 ~~~~l~~~a~--~~~ii~G~~~~~~~~~~yNt~~vi-~~G~i~~~y~K~~lp~~~~~~e~~~~~--~G~~~~vf~~~~~~ 137 (269)
T cd07586 63 RLQALAEASG--GICVVFGFVEEGRDGRFYNSAAYL-EDGRVVHVHRKVYLPTYGLFEEGRYFA--PGSHLRAFDTRFGR 137 (269)
T ss_pred HHHHHHHHcC--CCEEEEeCeEEcCCCcEEEEEEEe-cCCEEEEEEEeEeCCCCCccceeeeec--CCCcceEEEeCCeE
Confidence 7777777763 799999998876 48999999999 7999999999998632 4777776 56678999999999
Q ss_pred EEEEeecCCCchHHHHHHHHCCCeEEEEcCCCC----------hhhHhhhhhheeeecCeEEEEeCcccccCCCCCCCCC
Q 019166 181 IGAAICWENRMPLLRTAMYAKGIEIYCAPTADS----------REVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 250 (345)
Q Consensus 181 igv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~----------~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~ 250 (345)
||++||||.+||++.+.++.+|||+|++|++++ ..+|+.++++||+||+++|++||++|.
T Consensus 138 ig~~IC~D~~fp~~~~~~~~~ga~lil~ps~~~~~~~~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~---------- 207 (269)
T cd07586 138 AGVLICEDAWHPSLPYLLALDGADVIFIPANSPARGVGGDFDNEENWETLLKFYAMMNGVYVVFANRVGV---------- 207 (269)
T ss_pred EEEEEEeccCCcHHHHHHHHCCCCEEEEeCCCccccCccccchhHHHHHHHHHHHHHhCCeEEEEeeecC----------
Confidence 999999999999999999999999999999863 247899999999999999999999998
Q ss_pred ccCCCcCCCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcCCCCCCCCCcccee
Q 019166 251 EFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLS 320 (345)
Q Consensus 251 ~~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~~~~~rr~~ly~ 320 (345)
.++..++|+|+|++|+|+++++++.+++++++++||++.++..|..++++. .++++||+
T Consensus 208 ----------~~~~~~~G~S~ii~p~G~il~~~~~~~~~~~~~~id~~~~~~~r~~~~~~~-~~~~~~~~ 266 (269)
T cd07586 208 ----------EDGVYFWGGSRVVDPDGEVVAEAPLFEEDLLVAELDRSAIRRARFFSPTFR-DEDIRLVL 266 (269)
T ss_pred ----------cCCceEeCCcEEECCCCCEEEecCCccccEEEEEecHHHHHHHHhhCcccc-ccChhhhh
Confidence 456678999999999999999988778899999999999999999999875 68899987
No 24
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=100.00 E-value=1e-45 Score=341.38 Aligned_cols=246 Identities=31% Similarity=0.487 Sum_probs=213.8
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCH
Q 019166 26 RATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGP 105 (345)
Q Consensus 26 rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 105 (345)
|||++|+++. +|+++|++++.+++++|+++|+|||||||++++||... +... ...++...++
T Consensus 1 kia~~Q~~~~-~d~~~n~~~~~~~i~~A~~~g~dlivfPE~~l~g~~~~-------------~~~~----~~~~~~~~~~ 62 (265)
T cd07572 1 RVALIQMTST-ADKEANLARAKELIEEAAAQGAKLVVLPECFNYPGGTD-------------AFKL----ALAEEEGDGP 62 (265)
T ss_pred CEEEEEeeCC-CCHHHHHHHHHHHHHHHHHCCCCEEECCccccCcCcch-------------hhhh----hhhccccCCh
Confidence 6999999987 89999999999999999999999999999999999732 1111 0122345578
Q ss_pred HHHHHHHHHHhcCeEEEEeeE-EeeC--CeeEEEEEEECCCCceEeeeecCCCCc---------cccceeccCCCCCCCe
Q 019166 106 EVERLAAMAGKYKVYLVMGVI-ERDG--YTLYCTVLFFDSQGHFLGKHRKIMPTA---------LERIIWGFGDGSTIPV 173 (345)
Q Consensus 106 ~l~~l~~~a~~~~i~iv~G~~-~~~~--~~~yNt~~vi~p~G~ii~~y~K~~l~~---------~E~~~f~~~~G~~~~v 173 (345)
.++.++++|++++++|++|+. ++.+ +++||++++++|+|++++.|+|+||+. .|..+|. +|+.+.+
T Consensus 63 ~~~~l~~~a~~~~i~i~~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l~~~~~p~~~~~~e~~~~~--~G~~~~~ 140 (265)
T cd07572 63 TLQALSELAKEHGIWLVGGSIPERDDDDGKVYNTSLVFDPDGELVARYRKIHLFDVDVPGGISYRESDTLT--PGDEVVV 140 (265)
T ss_pred HHHHHHHHHHHCCeEEEEeeeccccCCCCcEEEEEEEECCCCeEEeEEeeEEeecccCCCCcccccccccC--CCCcceE
Confidence 899999999999999999965 5555 899999999999999999999999842 4666776 5667899
Q ss_pred EEcCCCcEEEEeecCCCchHHHHHHHHCCCeEEEEcCCCC----hhhHhhhhhheeeecCeEEEEeCcccccCCCCCCCC
Q 019166 174 FETPIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADS----REVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPE 249 (345)
Q Consensus 174 f~~~~~rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~----~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~ 249 (345)
|+++++|+|++||||.+||++.+.++++|||+|++|+++. ..+|..++++||+||++++++||++|.+
T Consensus 141 ~~~~~~~ig~~IC~D~~~pe~~r~~~~~gadli~~p~~~~~~~~~~~~~~~~~~rA~e~~~~vv~~n~~G~~-------- 212 (265)
T cd07572 141 VDTPFGKIGLGICYDLRFPELARALARQGADILTVPAAFTMTTGPAHWELLLRARAIENQCYVVAAAQAGDH-------- 212 (265)
T ss_pred EecCCceEEEEEEeccCcHHHHHHHHHCCCCEEEECCCCCCCcchHHHHHHHHHHHHhcCCEEEEEcccccC--------
Confidence 9999999999999999999999999999999999999874 4588888999999999999999999982
Q ss_pred CccCCCcCCCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcCCCCC
Q 019166 250 YEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVG 311 (345)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~~~ 311 (345)
.+...++|.|+|++|+|+++++++.+ +++++++||++.+++.|..++++.
T Consensus 213 -----------~~~~~~~G~S~i~~p~G~il~~~~~~-~~~~~~~id~~~~~~~r~~~~~~~ 262 (265)
T cd07572 213 -----------EAGRETYGHSMIVDPWGEVLAEAGEG-EGVVVAEIDLDRLEEVRRQIPVLK 262 (265)
T ss_pred -----------CCCCeecceeEEECCCcHHHhhcCCC-CcEEEEEeCHHHHHHHHHhCcchh
Confidence 34567899999999999999999855 899999999999999999998765
No 25
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=100.00 E-value=1.7e-45 Score=341.98 Aligned_cols=260 Identities=32% Similarity=0.454 Sum_probs=222.0
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCC
Q 019166 24 TVRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVP 103 (345)
Q Consensus 24 ~~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 103 (345)
.||||++|+++...|.+.|++++.+++++|++.|||||||||++++||.+ .+. ..+........
T Consensus 2 ~~rvA~~Q~~~~~~d~~~N~~~~~~~i~~a~~~ga~LvvfPEl~~tgy~~-------------~~~---~~~~~~~~~~~ 65 (274)
T COG0388 2 MMRVAAAQMAPKAGDPAENLARILRLIREAAARGADLVVFPELFLTGYPC-------------EDD---LFLEEAAAEAG 65 (274)
T ss_pred ceEEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCEEECCcccccCCCc-------------ccH---HHHHhhhhccC
Confidence 58999999999889999999999999999999999999999999999983 221 11112223344
Q ss_pred CHHHHHHHHHHHhcCeEEEEeeEEeeCCeeEEEEEEECCCCceEeeeecCCCCc---cccceeccCCCCCC-CeEEcCCC
Q 019166 104 GPEVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTA---LERIIWGFGDGSTI-PVFETPIG 179 (345)
Q Consensus 104 ~~~l~~l~~~a~~~~i~iv~G~~~~~~~~~yNt~~vi~p~G~ii~~y~K~~l~~---~E~~~f~~~~G~~~-~vf~~~~~ 179 (345)
.+.++.+++++++++++|+.|...... ..||++++++++|++++.|+|+||+. .|+.+|. +|+.. .+|+++++
T Consensus 66 ~~~~~~l~~~a~~~~~~ivg~~~~~~~-~~~~~~~~i~~~G~ii~~y~K~hl~~~~~~e~~~~~--~G~~~~~v~~~~~~ 142 (274)
T COG0388 66 EETLEFLAALAEEGGVIIVGGPLPERE-KLYNNAALIDPDGEILGKYRKLHLFDAFYEERRFFT--PGDEGVVVFETDGG 142 (274)
T ss_pred ChHHHHHHHHHHhCCeEEEEeeeeccc-cceeeEEEEcCCCcEEeEEeeecCCCCccchhhhcc--CCCccceeEEeCCc
Confidence 688999999998777777777664444 89999999999999999999999986 3777776 56665 59999999
Q ss_pred cEEEEeecCCCchHHHHHH-HHCCCeEEEEcCCCC----hhhHhhhhhheeeecCeEEEEeCcccccCCCCCCCCCccCC
Q 019166 180 KIGAAICWENRMPLLRTAM-YAKGIEIYCAPTADS----REVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSG 254 (345)
Q Consensus 180 rigv~IC~D~~fpe~~r~~-~~~ga~li~~ps~~~----~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~~~~ 254 (345)
|+|++||||++|||+.+.+ +..||+++++|+++. ..+|..++++||+||++||+.+|++|.
T Consensus 143 kig~~IC~D~~fPe~~~~~~a~~Gaeii~~p~a~~~~~~~~~w~~l~~arA~en~~~vv~~n~~g~-------------- 208 (274)
T COG0388 143 KIGLLICYDLRFPELARRLLALGGAELLLVPAAWPAERGLDHWEVLLRARAIENQVYVLAANRAGF-------------- 208 (274)
T ss_pred eEEEEEEeeccCHHHHHHHHHhcCCeEEEEcCCCCCcccHHHHHHHHHHHhhhcCceEEEecccCC--------------
Confidence 9999999999999987777 888999999999984 379999999999999999999999998
Q ss_pred CcCCCCCC-CccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcCCCCCCCCCccceeee
Q 019166 255 TEQDLTPD-SIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLSLV 322 (345)
Q Consensus 255 ~~~~~~~~-~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~~~~~rr~~ly~~~ 322 (345)
.+ ...++|+|+|++|+|++++++..++++++++++|++.++..|...+.+...+|.+.+...
T Consensus 209 ------~~~~~~~~G~S~i~~p~G~v~~~~~~~~e~~~~~~id~~~~~~~r~~~~~~~~~~~~~~~~~~ 271 (274)
T COG0388 209 ------DGAGLEFCGHSAIIDPDGEVLAEAGEEEEGVLLADIDLAELAEVRRKIPVLKDRRRFDLDVEL 271 (274)
T ss_pred ------CCCccEEecceEEECCCccEEeecCCCCCcEEEEEECHHHHHHHHhhCcchhhcccchhhhcc
Confidence 33 378999999999999999999866899999999999999999999988766776665543
No 26
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=100.00 E-value=1.7e-45 Score=350.55 Aligned_cols=262 Identities=25% Similarity=0.263 Sum_probs=219.7
Q ss_pred CCcceEEEEEeccCC----CCChHHHHHHHHHHHHHHH--hCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHH
Q 019166 21 SAPTVRATVVQASTI----FYDTPATLGKAERLLAEAA--GYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRK 94 (345)
Q Consensus 21 ~~~~~rIa~vQ~~~~----~~d~~~n~~~i~~~i~~A~--~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 94 (345)
+...++||++|++.. ..|+..|++++.+++++|+ ..++|||||||++++||.+. + ..
T Consensus 9 ~~~~l~va~vQ~~~p~~~~~~di~~Nl~~i~~~i~~a~~~~~gadLVVfPE~~l~G~~y~-----------~------~~ 71 (345)
T PRK13286 9 SNDTVGVAVVNYKMPRLHTKAEVLENARKIADMIVGMKQGLPGMDLVIFPEYSTHGIMYD-----------R------QE 71 (345)
T ss_pred CCCceEEEEEEcCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEcCCccccCCCcC-----------h------HH
Confidence 445799999999842 2578999999999999987 45899999999999997621 1 12
Q ss_pred HHhcccCCCCHHHHHHHHHHHhcCeEEEEeeE-Ee----eCCeeEEEEEEECCCCceEeeeecCCCCccccceeccCCCC
Q 019166 95 YHASAIDVPGPEVERLAAMAGKYKVYLVMGVI-ER----DGYTLYCTVLFFDSQGHFLGKHRKIMPTALERIIWGFGDGS 169 (345)
Q Consensus 95 ~~~~a~~~~~~~l~~l~~~a~~~~i~iv~G~~-~~----~~~~~yNt~~vi~p~G~ii~~y~K~~l~~~E~~~f~~~~G~ 169 (345)
+.+.+..++++.++.++++|+++++++++|.. ++ .++.+||++++|+|+|+++.+|+|+||+..++ +|. +|+
T Consensus 72 ~~~~a~~i~g~~~~~l~~~A~~~~i~~v~~i~ge~~~~~~~~~~yNta~vi~~~G~i~~~YrK~~p~~~~e-~~~--pG~ 148 (345)
T PRK13286 72 MYETASTIPGEETAIFAEACRKAKVWGVFSLTGERHEEHPRKAPYNTLILINDKGEIVQKYRKIMPWCPIE-GWY--PGD 148 (345)
T ss_pred HHHhcccCCCHHHHHHHHHHHHcCEEEEEeccccccccCCCCceeEEEEEECCCCeEEEEEEeecCCchhh-cee--cCC
Confidence 34566778889999999999999999998876 33 24579999999999999999999999976543 454 566
Q ss_pred CCCeEEcCCC-cEEEEeecCCCchHHHHHHHHCCCeEEEEcCCCC---hhhHhhhhhheeeecCeEEEEeCcccccCCCC
Q 019166 170 TIPVFETPIG-KIGAAICWENRMPLLRTAMYAKGIEIYCAPTADS---REVWQASMTHIALEGGCFVLSANQFCRRKDYP 245 (345)
Q Consensus 170 ~~~vf~~~~~-rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~---~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~ 245 (345)
...+|+++.+ |||++||||.+|||++|.++++|||+|++|+++. ..+|..++++||+||++||+.||++|.
T Consensus 149 ~~~v~~~~~G~kiG~lIC~D~~fPE~~R~la~~GAelii~psa~~~~~~~~~~~~~rarA~eN~~yVv~aN~~G~----- 223 (345)
T PRK13286 149 CTYVSEGPKGLKISLIICDDGNYPEIWRDCAMKGAELIVRCQGYMYPAKEQQVLVAKAMAWANNCYVAVANAAGF----- 223 (345)
T ss_pred CCEEEeCCCCcEEEEEEEecccChHHHHHHHHcCCeEEEEccccCCCchHHHHHHHHHHHHHCCCEEEEEecccc-----
Confidence 7789999765 9999999999999999999999999999999873 568999999999999999999999998
Q ss_pred CCCCCccCCCcCCCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcCCCCCC--CCCccceeee
Q 019166 246 PPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGH--YSRPEVLSLV 322 (345)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~~~~--~rr~~ly~~~ 322 (345)
.+...+.|+|+|++|+|+++++++.+++++++++||++.+++.|..+++.++ +.+..-|.-.
T Consensus 224 ---------------~~~~~~~G~S~Ivdp~G~vla~~~~~~e~ii~adld~~~i~~~R~~~~~~n~~~~~~~~~y~~~ 287 (345)
T PRK13286 224 ---------------DGVYSYFGHSAIIGFDGRTLGECGEEEMGIQYAQLSVSQIRDARRNDQSQNHLFKLLHRGYTGV 287 (345)
T ss_pred ---------------cCCceeeeeEEEECCCCcEEEecCCCCCeEEEEEEeHHHHHHHHHhCCcccchhhhccceEEEE
Confidence 3456899999999999999999887788999999999999999999977554 3333444433
No 27
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=2.6e-45 Score=336.98 Aligned_cols=241 Identities=31% Similarity=0.414 Sum_probs=213.0
Q ss_pred EEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCHH
Q 019166 27 ATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPE 106 (345)
Q Consensus 27 Ia~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 106 (345)
||++|+++. +|+++|++++.+++++|+++|+|||||||++++||... +. .+.+.++...+++
T Consensus 1 ia~~Q~~~~-~d~~~n~~~~~~~i~~a~~~g~dlivfPE~~l~g~~~~-------------~~----~~~~~~~~~~~~~ 62 (255)
T cd07581 1 VALAQFASS-GDKEENLEKVRRLLAEAAAAGADLVVFPEYTMARFGDG-------------LD----DYARVAEPLDGPF 62 (255)
T ss_pred CEEEEeeCC-CCHHHHHHHHHHHHHHHHHcCCCEEECcchhcCCCCcc-------------hh----hHHhhhccCCCHH
Confidence 689999987 89999999999999999999999999999999999732 11 1233445666789
Q ss_pred HHHHHHHHHhcCeEEEEeeEEeeC-CeeEEEEEEECCCCceEeeeecCCCCc----cccceeccCCCCC--CCeEEcCCC
Q 019166 107 VERLAAMAGKYKVYLVMGVIERDG-YTLYCTVLFFDSQGHFLGKHRKIMPTA----LERIIWGFGDGST--IPVFETPIG 179 (345)
Q Consensus 107 l~~l~~~a~~~~i~iv~G~~~~~~-~~~yNt~~vi~p~G~ii~~y~K~~l~~----~E~~~f~~~~G~~--~~vf~~~~~ 179 (345)
++.++++|+++++++++|++++++ +++||++++++++|++++.|+|+||+. .|..+|.+ |+. ..+++++++
T Consensus 63 ~~~l~~~a~~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~L~~~~~~~e~~~~~~--G~~~~~~~~~~~~~ 140 (255)
T cd07581 63 VSALARLARELGITVVAGMFEPAGDGRVYNTLVVVGPDGEIIAVYRKIHLYDAFGFRESDTVAP--GDELPPVVFVVGGV 140 (255)
T ss_pred HHHHHHHHHHcCeEEEEEeeeeCCCCcEEEeEEEECCCCcEEEEEeeeccCCCCCcCcccccCC--CCCCCceEEecCCc
Confidence 999999999999999999998764 489999999999999999999999864 47777764 555 678899889
Q ss_pred cEEEEeecCCCchHHHHHHHHCCCeEEEEcCCCC-----hhhHhhhhhheeeecCeEEEEeCcccccCCCCCCCCCccCC
Q 019166 180 KIGAAICWENRMPLLRTAMYAKGIEIYCAPTADS-----REVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSG 254 (345)
Q Consensus 180 rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~-----~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~~~~ 254 (345)
|+|++||||.+||++.+.++++||++|++|++|. .++|..++++||+||++|+++||++|.
T Consensus 141 kig~~IC~D~~~pe~~~~~~~~ga~lil~ps~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~-------------- 206 (255)
T cd07581 141 KVGLATCYDLRFPELARALALAGADVIVVPAAWVAGPGKEEHWETLLRARALENTVYVAAAGQAGP-------------- 206 (255)
T ss_pred eEEEEEEecccCHHHHHHHHHCCCcEEEECCcccCCCCchHHHHHHHHHHHHHhCCEEEEEcCcCC--------------
Confidence 9999999999999999999999999999999873 468888999999999999999999876
Q ss_pred CcCCCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcCCCCCC
Q 019166 255 TEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGH 312 (345)
Q Consensus 255 ~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~~~~ 312 (345)
.+.|.|+|++|+|+++++++. ++++++++||++.++..|..++++.+
T Consensus 207 ----------~~~G~S~i~~p~G~i~~~~~~-~~~~l~~~id~~~~~~~r~~~~~~~~ 253 (255)
T cd07581 207 ----------RGIGRSMVVDPLGVVLADLGE-REGLLVADIDPERVEEAREALPVLEN 253 (255)
T ss_pred ----------CcccceEEECCCcceeeecCC-CCcEEEEEeCHHHHHHHHHhCcchhc
Confidence 578999999999999999874 58999999999999999999998763
No 28
>PRK13287 amiF formamidase; Provisional
Probab=100.00 E-value=3.6e-45 Score=347.63 Aligned_cols=259 Identities=22% Similarity=0.298 Sum_probs=219.4
Q ss_pred CCcceEEEEEeccCC----CCChHHHHHHHHHHHHHHHhC--CCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHH
Q 019166 21 SAPTVRATVVQASTI----FYDTPATLGKAERLLAEAAGY--GSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRK 94 (345)
Q Consensus 21 ~~~~~rIa~vQ~~~~----~~d~~~n~~~i~~~i~~A~~~--gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 94 (345)
+..+||||++|++.. ..+++.|++++.+++++|++. |+|||||||++++||.... +.
T Consensus 10 ~~~~l~VAlvQ~~~~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~~~-----------~~------ 72 (333)
T PRK13287 10 PIEGVLVALIQYPVPVVESRADIDKQIEQIIKTVHKTKAGYPGLDLIVFPEYSTQGLNTKK-----------WT------ 72 (333)
T ss_pred CCCceEEEEEEcccccCCchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCcccccCCccc-----------cc------
Confidence 445799999999963 478999999999999999864 8999999999999997320 00
Q ss_pred HHhcccCCCCHHHHHHHHHHHhcCeEEEEeeEEee-CC-eeEEEEEEECCCCceEeeeecCCCCccccceeccCCCC-CC
Q 019166 95 YHASAIDVPGPEVERLAAMAGKYKVYLVMGVIERD-GY-TLYCTVLFFDSQGHFLGKHRKIMPTALERIIWGFGDGS-TI 171 (345)
Q Consensus 95 ~~~~a~~~~~~~l~~l~~~a~~~~i~iv~G~~~~~-~~-~~yNt~~vi~p~G~ii~~y~K~~l~~~E~~~f~~~~G~-~~ 171 (345)
..+.+..++++.++.++++|+++++++++|..++. ++ ++||++++++|+|+++.+|+|+||+..++ .|. +|+ ..
T Consensus 73 ~~~~a~~~~g~~~~~l~~~a~~~~i~~~~g~~e~~~~~~~~yNsa~vi~~~G~i~~~YrK~h~~~p~~-~~~--pG~~~~ 149 (333)
T PRK13287 73 TEEFLCTVDGPEVDAFAQACKENKVWGVFSIMERNPDGNEPYNTAIIIDDQGEIILKYRKLHPWVPVE-PWE--PGDLGI 149 (333)
T ss_pred hhhhcccCCCHHHHHHHHHHHHcCeEEEEeeEEEcCCCCceEEEEEEECCCCcEEEEEeecccCCccc-ccc--CCCCCC
Confidence 11334456788999999999999999999988764 33 49999999999999999999999865443 454 555 57
Q ss_pred CeEEcCC-CcEEEEeecCCCchHHHHHHHHCCCeEEEEcCCCC---hhhHhhhhhheeeecCeEEEEeCcccccCCCCCC
Q 019166 172 PVFETPI-GKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADS---REVWQASMTHIALEGGCFVLSANQFCRRKDYPPP 247 (345)
Q Consensus 172 ~vf~~~~-~rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~---~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~ 247 (345)
++|+++. .|+|++||||.+|||++|.++.+||++|++|+++. .++|....++||++|++|++.+|++|.
T Consensus 150 ~v~~~~~g~kiG~~ICyD~~fPe~~R~~a~~GAeill~~s~~~~~~~~~w~~~~~arA~en~~~vv~an~~G~------- 222 (333)
T PRK13287 150 PVCDGPGGSKLAVCICHDGMFPEMAREAAYKGANVMIRISGYSTQVREQWILTNRSNAWQNLMYTASVNLAGY------- 222 (333)
T ss_pred ceEECCCCceEEEEEEecccchHHHHHHHHCCCeEEEECCccCCcchhHHHHHHHHHHHhCCcEEEEEecccc-------
Confidence 8999975 59999999999999999999999999999999874 568988899999999999999999998
Q ss_pred CCCccCCCcCCCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcCCCCCCCCCccceeeeee
Q 019166 248 PEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLSLVVR 324 (345)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~~~~~rr~~ly~~~~~ 324 (345)
.+...+.|+|+|+||+|+++++++.+++++++++||++.+++.|..+++ +.++|++..+
T Consensus 223 -------------~~~~~~~G~S~Iidp~G~vl~~~~~~~~~ii~aeid~~~~~~~R~~~~~-----~n~~~~~~~~ 281 (333)
T PRK13287 223 -------------DGVFYYFGEGQVCNFDGTTLVQGHRNPWEIVTAEVRPDLADEARLGWGL-----ENNIYNLGHR 281 (333)
T ss_pred -------------CCCeeeeeeeEEECCCCcEEEeCCCCCCeEEEEEEeHHHHHHHHHhcCc-----cccchhhccc
Confidence 3456789999999999999999987888999999999999999999876 4566766554
No 29
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=100.00 E-value=4.8e-46 Score=348.03 Aligned_cols=249 Identities=20% Similarity=0.176 Sum_probs=200.7
Q ss_pred eEEEEEeccCCCCCh-------HHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHH--
Q 019166 25 VRATVVQASTIFYDT-------PATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKY-- 95 (345)
Q Consensus 25 ~rIa~vQ~~~~~~d~-------~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~-- 95 (345)
.|+|+||..+.+.+. ++|++++.+++++|+++|+|||||||++++||....+.......+-|. ....+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~A~~~gadLIVfPE~~ltGy~~~~~~~~~~~~~~~~---~~~~~~~ 77 (299)
T cd07567 1 YIAAVVEHHPILSPDPDALQIMEKNLDIYEEIIKSAAKQGADIIVFPEDGLTGFIFTRFVIYPFLEDVPD---PEVNWNP 77 (299)
T ss_pred CEEEEEEEEeeccCCccHHHHHHHHHHHHHHHHHHHHHcCCCEEEccccccCCCCCCccccCchhccccc---ccccccc
Confidence 378999999999887 999999999999999999999999999999998421100000000000 00000
Q ss_pred -HhcccCCCCHHHHHHHHHHHhcCeEEEEeeEEee-----------C-CeeEEEEEEECCCCceEeeeecCCCCccccce
Q 019166 96 -HASAIDVPGPEVERLAAMAGKYKVYLVMGVIERD-----------G-YTLYCTVLFFDSQGHFLGKHRKIMPTALERII 162 (345)
Q Consensus 96 -~~~a~~~~~~~l~~l~~~a~~~~i~iv~G~~~~~-----------~-~~~yNt~~vi~p~G~ii~~y~K~~l~~~E~~~ 162 (345)
........+++++.|+++|++++++|++|+.++. + +++||++++|+|+|+++++|+|+||+ .|..+
T Consensus 78 ~~~~~~~~~~~~~~~l~~lAr~~~i~Iv~G~~e~~~~~~~~~~~~~~~~~~yNsa~vi~~~G~iv~~YrK~hLf-~E~~~ 156 (299)
T cd07567 78 CLDPDRFDYTEVLQRLSCAARENSIYVVANLGEKQPCDSSDPHCPPDGRYQYNTNVVFDRDGTLIARYRKYNLF-GEPGF 156 (299)
T ss_pred cccccccCchHHHHHHHHHHHHhCeEEEeccccccccccccccCCCCCCceeEEEEEEcCCCCccceEeecccc-ccccc
Confidence 0001123457899999999999999999988753 2 36999999999999999999999998 78888
Q ss_pred eccCCCCCCCeEEcCCC-cEEEEeecCCCchHHHHHHHHC-CCeEEEEcCCCC----hhhHhhhhhheeeecCeEEEEeC
Q 019166 163 WGFGDGSTIPVFETPIG-KIGAAICWENRMPLLRTAMYAK-GIEIYCAPTADS----REVWQASMTHIALEGGCFVLSAN 236 (345)
Q Consensus 163 f~~~~G~~~~vf~~~~~-rigv~IC~D~~fpe~~r~~~~~-ga~li~~ps~~~----~~~~~~~~~~rA~en~~~vv~~n 236 (345)
|.+| ++.+.+|+++++ |||++||||++|||+.|.++++ |||+|++|++|. ..+|..++++||+||++||+.||
T Consensus 157 ~~~G-~~~~~vf~t~~g~kiGvlICyD~~FPE~~r~la~~~GAdlil~paaw~~~~~~~~w~~l~~arA~eN~~~vi~~N 235 (299)
T cd07567 157 DVPP-EPEIVTFDTDFGVTFGIFTCFDILFKEPALELVKKLGVDDIVFPTAWFSELPFLTAVQIQQAWAYANGVNLLAAN 235 (299)
T ss_pred cCCC-CCCceEEECCCCCEEEEEEEeeccchHHHHHHHHhCCCCEEEECCccCCCCCchhHHHHHHHHHHHcCceEEEec
Confidence 7643 135789999986 9999999999999999999999 999999999984 34899999999999999999999
Q ss_pred cccccCCCCCCCCCccCCCcCCCCCCCccccceeEEECCC-CcccccCCC-CCceEEEEEechhHHH
Q 019166 237 QFCRRKDYPPPPEYEFSGTEQDLTPDSIVCAGGSVIISPS-GSVLAGPNY-DGEALISADLDLGEIA 301 (345)
Q Consensus 237 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~S~ii~p~-G~vl~~~~~-~~e~~l~~~idl~~~~ 301 (345)
++|. . .+.|+|+|++|+ |+++++++. .++++++++||++..+
T Consensus 236 ~~g~--------------------~---~~~G~S~iv~P~~G~v~a~~~~~~~e~~l~~~id~~~~~ 279 (299)
T cd07567 236 YNNP--------------------S---AGMTGSGIYAGRSGALVYHYDNEPGGKLLVAEVPKLPSR 279 (299)
T ss_pred CCCC--------------------c---CccccceEEcCCCCcEEEEecCCCCceEEEEEccCCccc
Confidence 9876 1 357999999999 999999754 4678999999987664
No 30
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=100.00 E-value=3.4e-45 Score=343.40 Aligned_cols=255 Identities=29% Similarity=0.440 Sum_probs=212.0
Q ss_pred EEEEEeccCCC----CChHHHHHHHHHHHHHHHh-----CCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHH
Q 019166 26 RATVVQASTIF----YDTPATLGKAERLLAEAAG-----YGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYH 96 (345)
Q Consensus 26 rIa~vQ~~~~~----~d~~~n~~~i~~~i~~A~~-----~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (345)
.++.+|..... +|++.|++++.+++++|++ +|+|||||||++++||... +......+.
T Consensus 2 ~~~~~~~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~~gadlivfPE~~ltGy~~~-------------~~~~~~~~~ 68 (294)
T cd07582 2 TALALQPTCEAAEDRADILANIDRINEQIDAAVGFSGPGLPVRLVVLPEYALQGFPMG-------------EPREVWQFD 68 (294)
T ss_pred eeEEEecccccccChhhHHHHHHHHHHHHHHHHHhcccCCCceEEEcCccccccCCcc-------------cchhhhhhh
Confidence 46778887644 7899999999999999987 4799999999999999832 221122245
Q ss_pred hcccCCCCHHHHHHHHHHHhcCeEEEEeeEEeeC---CeeEEEEEEECCCCceEeeeecCCCCcccc---------c-ee
Q 019166 97 ASAIDVPGPEVERLAAMAGKYKVYLVMGVIERDG---YTLYCTVLFFDSQGHFLGKHRKIMPTALER---------I-IW 163 (345)
Q Consensus 97 ~~a~~~~~~~l~~l~~~a~~~~i~iv~G~~~~~~---~~~yNt~~vi~p~G~ii~~y~K~~l~~~E~---------~-~f 163 (345)
+.++..+++.++.|+++|++++++|++|+.++++ +++||++++|+|+|++++.|+|+||+..|. . ..
T Consensus 69 ~~a~~~~~~~~~~l~~~A~~~~i~iv~G~~e~~~~~~~~~yNsa~~i~~~G~i~~~yrK~hl~~~~~e~~p~~~~~~~~~ 148 (294)
T cd07582 69 KAAIDIPGPETEALGEKAKELNVYIAANAYERDPDFPGLYFNTAFIIDPSGEIILRYRKMNSLAAEGSPSPHDVWDEYIE 148 (294)
T ss_pred hccccCCCHHHHHHHHHHHHcCEEEEEeeeeecCCCCCcEEEEEEEECCCCcEEEEEeeeccCccccccCccchhhhhcc
Confidence 6677788999999999999999999999987653 689999999999999999999999876432 0 01
Q ss_pred ccCCC-C-CCCeEEcCCCcEEEEeecCCCchHHHHHHHHCCCeEEEEcCCCC----hhhHhhhhhheeeecCeEEEEeCc
Q 019166 164 GFGDG-S-TIPVFETPIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADS----REVWQASMTHIALEGGCFVLSANQ 237 (345)
Q Consensus 164 ~~~~G-~-~~~vf~~~~~rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~----~~~~~~~~~~rA~en~~~vv~~n~ 237 (345)
..++| . .+.+++++++|||++||||++|||+.|.++++|||+|++|+++. ..+|..++++||+||++|++.||+
T Consensus 149 ~~g~g~~~~~~v~~~~~~~iG~~ICyD~~fpe~~r~la~~Gadlil~psa~~~~~~~~~~~~~~~arA~en~~~vv~aN~ 228 (294)
T cd07582 149 VYGYGLDALFPVADTEIGNLGCLACEEGLYPEVARGLAMNGAEVLLRSSSEVPSVELDPWEIANRARALENLAYVVSANS 228 (294)
T ss_pred cCCCcccccceeecCCCceEEEEEeecccChHHHHHHHHCCCcEEEEcCCCCCCcchhhHHHHHHHHHHhcCCEEEEecc
Confidence 12344 2 36899999999999999999999999999999999999999873 457888899999999999999999
Q ss_pred ccccCCCCCCCCCccCCCcCCCCCCCccccceeEEECCCCcccccCCCC-CceEEEEEechhHHHHhhhcCCC
Q 019166 238 FCRRKDYPPPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYD-GEALISADLDLGEIARAKFDFDV 309 (345)
Q Consensus 238 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~-~e~~l~~~idl~~~~~~r~~~~~ 309 (345)
+|.+. . ......+.|+|+|++|+|+++++++.+ ++++++++||++.++..|+..++
T Consensus 229 ~G~~~-~---------------~~~~~~~~G~S~ivdp~G~vla~~~~~~~e~il~~~id~~~~~~~R~~~~~ 285 (294)
T cd07582 229 GGIYG-S---------------PYPADSFGGGSMIVDYKGRVLAEAGYGPGSMVAGAEIDIEALRRARARPGM 285 (294)
T ss_pred cccCc-c---------------cccCceecceeEEECCCCCEEEeCCCCCCCeEEEEEEcHHHHHHHHHhcCc
Confidence 88720 0 011357889999999999999999877 78999999999999999998765
No 31
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-46 Score=325.69 Aligned_cols=257 Identities=28% Similarity=0.435 Sum_probs=221.8
Q ss_pred eEEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCC
Q 019166 25 VRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPG 104 (345)
Q Consensus 25 ~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 104 (345)
.+||++|+... .|+..|++...++|++|+++||++|.|||.+- | +|. |+.. -.+.++..++
T Consensus 16 ~~vAv~Qm~S~-~Dl~kNl~~~keLi~eA~~k~A~~iflPE~~d--F---------i~~-n~~e------si~Lae~l~~ 76 (295)
T KOG0807|consen 16 KRVAVAQMTSS-NDLTKNLATCKELISEAAQKGAKLIFLPEAFD--F---------IGQ-NPLE------SIELAEPLDG 76 (295)
T ss_pred ceeEEEeeccc-hHHHHHHHHHHHHHHHHHHcCCCEEEcchhhh--h---------hcC-Cccc------ceecccccCh
Confidence 78999999876 79999999999999999999999999999742 1 121 1211 2356677789
Q ss_pred HHHHHHHHHHHhcCeEEEEeeE-Eee---CCeeEEEEEEECCCCceEeeeecCCCCcc---------ccceeccCCCCC-
Q 019166 105 PEVERLAAMAGKYKVYLVMGVI-ERD---GYTLYCTVLFFDSQGHFLGKHRKIMPTAL---------ERIIWGFGDGST- 170 (345)
Q Consensus 105 ~~l~~l~~~a~~~~i~iv~G~~-~~~---~~~~yNt~~vi~p~G~ii~~y~K~~l~~~---------E~~~f~~~~G~~- 170 (345)
++++..+++|++++|++.+|.. ++. ..+++|+.++|+.+|+++..|+|+|++.- |+.+- .||+.
T Consensus 77 k~m~~y~elar~~nIwlSlgg~~~r~~~~~~k~~N~hl~id~~G~i~a~Y~KlHLFDVeipg~~~lkES~~t--~pG~~i 154 (295)
T KOG0807|consen 77 KFMEQYRELARSHNIWLSLGGHHERSDDGNQKLRNTHLLIDSKGEIRAEYQKLHLFDVEIPGGPRLKESNTT--QPGTAI 154 (295)
T ss_pred HHHHHHHHHHHhcCeeEEeccccCCCccccceeeeeEEEEcCCchHHHHHhhhceeEeecCCCcccccccCc--CCCccc
Confidence 9999999999999999999976 443 26999999999999999999999998752 45443 35655
Q ss_pred CCeEEcCCCcEEEEeecCCCchHHHHHHHHCCCeEEEEcCCC----ChhhHhhhhhheeeecCeEEEEeCcccccCCCCC
Q 019166 171 IPVFETPIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTAD----SREVWQASMTHIALEGGCFVLSANQFCRRKDYPP 246 (345)
Q Consensus 171 ~~vf~~~~~rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~----~~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~ 246 (345)
.+.+++|.||+|..||||++|||++..+.+.||+|+..||++ +..+|+.++++||+|++||||++.++|.
T Consensus 155 ~~pv~tP~GklGlaICYDiRFpE~sl~LR~~gA~iLtyPSAFT~~TG~AHWEiLlRARAietQCYVvaaaQ~G~------ 228 (295)
T KOG0807|consen 155 ESPVDTPLGKLGLAICYDIRFPELSLKLRKMGAQILTYPSAFTIKTGEAHWEILLRARAIETQCYVVAAAQVGK------ 228 (295)
T ss_pred CCccCCcccccceeeeeeccCchHHHHHHHcCCcEEeccchhhhcccHHHHHHHHHHHHhhcceEEEehhhccc------
Confidence 556899999999999999999999999999999999999987 4789999999999999999999999998
Q ss_pred CCCCccCCCcCCCCCCCccccceeEEECCCCcccccCCCC-CceEEEEEechhHHHHhhhcCCCCCCCCCccceeee
Q 019166 247 PPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYD-GEALISADLDLGEIARAKFDFDVVGHYSRPEVLSLV 322 (345)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~-~e~~l~~~idl~~~~~~r~~~~~~~~~rr~~ly~~~ 322 (345)
+......+|+|+|+||+|.+++.++.. ..+++++|||++.++..|...|++. +||+|+|...
T Consensus 229 -------------HneKR~SyGhSMiVDPWGtVva~~se~~~~~l~~AdiDlslld~lr~~mP~~~-hRr~dly~~~ 291 (295)
T KOG0807|consen 229 -------------HNEKRESYGHSMIVDPWGTVVARCSERTGPGLILADIDLSLLDSLRTKMPLFN-HRRNDLYTLF 291 (295)
T ss_pred -------------ccchhhccCcceEEcchhhhheecCCCCCCceEEEEccHHHHHHHHHhCchhh-hcccchhhhh
Confidence 344667899999999999999999733 3899999999999999999999887 6999999865
No 32
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=100.00 E-value=5.5e-45 Score=334.62 Aligned_cols=242 Identities=21% Similarity=0.344 Sum_probs=211.8
Q ss_pred eEEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCC
Q 019166 25 VRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPG 104 (345)
Q Consensus 25 ~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 104 (345)
||||++|+++.+.|++.|++++.+++++|++ |+|||||||++++||.. .+. +.++...+
T Consensus 1 mkia~~Q~~~~~~d~~~N~~~~~~~i~~a~~-gadlvvfPE~~l~g~~~-------------~~~-------~~~~~~~~ 59 (252)
T cd07575 1 LKIALIQTDLVWEDPEANLAHFEEKIEQLKE-KTDLIVLPEMFTTGFSM-------------NAE-------ALAEPMNG 59 (252)
T ss_pred CEEEEEEeecCcCCHHHHHHHHHHHHHHhhc-CCCEEEeCCcCcCCCCc-------------cHH-------HhhcccCC
Confidence 7999999999989999999999999999997 99999999999999972 111 12345567
Q ss_pred HHHHHHHHHHHhcCeEEEEeeEEeeCCeeEEEEEEECCCCceEeeeecCCCCc--cccceeccCCCCCCCeEEcCCCcEE
Q 019166 105 PEVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTA--LERIIWGFGDGSTIPVFETPIGKIG 182 (345)
Q Consensus 105 ~~l~~l~~~a~~~~i~iv~G~~~~~~~~~yNt~~vi~p~G~ii~~y~K~~l~~--~E~~~f~~~~G~~~~vf~~~~~rig 182 (345)
+.++.++++|+++++.|++|.++++++++||++++++++|++ ..|+|+|++. .|..+|. +|+...+|+++++|+|
T Consensus 60 ~~~~~l~~la~~~~i~i~~~~~~~~~~~~yNs~~~i~~~G~i-~~y~K~~l~~~~~e~~~~~--~G~~~~~~~~~~~~ig 136 (252)
T cd07575 60 PTLQWMKAQAKKKGAAITGSLIIKEGGKYYNRLYFVTPDGEV-YHYDKRHLFRMAGEHKVYT--AGNERVIVEYKGWKIL 136 (252)
T ss_pred hHHHHHHHHHHHCCeEEEEEEEEccCCceEEEEEEECCCCCE-EEEeeeecCCCCCccceec--CCCCceEEEECCEEEE
Confidence 889999999999999999888887888999999999999985 5999998864 5677776 4567789999999999
Q ss_pred EEeecCCCchHHHHHHHHCCCeEEEEcCCCC---hhhHhhhhhheeeecCeEEEEeCcccccCCCCCCCCCccCCCcCCC
Q 019166 183 AAICWENRMPLLRTAMYAKGIEIYCAPTADS---REVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSGTEQDL 259 (345)
Q Consensus 183 v~IC~D~~fpe~~r~~~~~ga~li~~ps~~~---~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~~~~~~~~~ 259 (345)
++||||++|||+.+.++. |+++++|++|+ ..+|+.+.++||+||++|++.||++|.+
T Consensus 137 ~~IC~D~~~pe~~r~~~~--a~lil~~s~~~~~~~~~~~~~~~arA~en~~~vv~~n~~G~~------------------ 196 (252)
T cd07575 137 LQVCYDLRFPVWSRNTND--YDLLLYVANWPAPRRAAWDTLLKARAIENQAYVIGVNRVGTD------------------ 196 (252)
T ss_pred EEEEeccCChHHHHhhcC--CCEEEEeCCCCCCchHHHHHHhHHHHhhccceEEEecccccC------------------
Confidence 999999999999988654 99999999874 4689989999999999999999999982
Q ss_pred CCCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcCCCCCC
Q 019166 260 TPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGH 312 (345)
Q Consensus 260 ~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~~~~ 312 (345)
..+..+.|+|+|++|+|+++++++.+ ++++++++|++.++..|..++++..
T Consensus 197 -~~~~~~~G~S~i~~p~G~~l~~~~~~-e~~i~~~id~~~~~~~r~~~~~~~~ 247 (252)
T cd07575 197 -GNGLEYSGDSAVIDPLGEPLAEAEED-EGVLTATLDKEALQEFREKFPFLKD 247 (252)
T ss_pred -CCCceEcceeEEECCCCceeeEcCCC-ceEEEEEECHHHHHHHHhhCCcccc
Confidence 22567899999999999999998866 8999999999999999999988753
No 33
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=100.00 E-value=7.8e-45 Score=335.03 Aligned_cols=243 Identities=23% Similarity=0.268 Sum_probs=205.6
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCH
Q 019166 26 RATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGP 105 (345)
Q Consensus 26 rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 105 (345)
|||++|+++..+|.+.|++++.+++++|+++|+|||||||++++||... +......+.+. ..+
T Consensus 1 ria~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy~~~-------------~~~~~~~~~~~----~~~ 63 (261)
T cd07570 1 RIALAQLNPTVGDLEGNAEKILEAIREAKAQGADLVVFPELSLTGYPPE-------------DLLLRPDFLEA----AEE 63 (261)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHHcCCCEEEccchhccCCChH-------------HHhhCHHHHHH----HHH
Confidence 6999999998899999999999999999999999999999999999732 11111111110 123
Q ss_pred HHHHHHHHHHhcCeEEEEeeEEeeCCeeEEEEEEECCCCceEeeeecCCCCc----cccceeccCCCCCCCeEEcCCCcE
Q 019166 106 EVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTA----LERIIWGFGDGSTIPVFETPIGKI 181 (345)
Q Consensus 106 ~l~~l~~~a~~~~i~iv~G~~~~~~~~~yNt~~vi~p~G~ii~~y~K~~l~~----~E~~~f~~~~G~~~~vf~~~~~ri 181 (345)
.++.+++.+++++++|++|+++++++++||+++++ ++|++++.|+|+|+.+ .|..+|. +|+...+|+++++||
T Consensus 64 ~~~~la~~~~~~~i~ii~G~~~~~~~~~yNs~~~i-~~G~i~~~y~K~~l~~~~~~~e~~~~~--~G~~~~~~~~~~~~i 140 (261)
T cd07570 64 ALEELAAATADLDIAVVVGLPLRHDGKLYNAAAVL-QNGKILGVVPKQLLPNYGVFDEKRYFT--PGDKPDVLFFKGLRI 140 (261)
T ss_pred HHHHHHHhcccCCcEEEEeceEecCCCEEEEEEEE-eCCEEEEEEECccCcCCccccccccCc--cCCCCCeEEECCEEE
Confidence 45666666667799999999988888999999999 5999999999999854 4777876 556678999999999
Q ss_pred EEEeecCCCchHH-HHHHHHCCCeEEEEcCCCC-----hhhHhhhhhheeeecCeEEEEeCcccccCCCCCCCCCccCCC
Q 019166 182 GAAICWENRMPLL-RTAMYAKGIEIYCAPTADS-----REVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSGT 255 (345)
Q Consensus 182 gv~IC~D~~fpe~-~r~~~~~ga~li~~ps~~~-----~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~~~~~ 255 (345)
|++||||.+||++ .|.++++|||++++|++++ ..+|..+.++||+||++|++.+|++|.
T Consensus 141 g~~IC~D~~fpe~~~r~~~~~ga~ll~~ps~~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~g~--------------- 205 (261)
T cd07570 141 GVEICEDLWVPDPPSAELALAGADLILNLSASPFHLGKQDYRRELVSSRSARTGLPYVYVNQVGG--------------- 205 (261)
T ss_pred EEEeecccCCCCchHHHHHHcCCcEEEEeCCCccccCcHHHHHHHHHHHHHHhCCcEEEEeCCCC---------------
Confidence 9999999999999 9999999999999999874 346778899999999999999999887
Q ss_pred cCCCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcCCCC
Q 019166 256 EQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVV 310 (345)
Q Consensus 256 ~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~~ 310 (345)
.++..+.|+|+|++|+|+++++++.+ +.+++++|++.++..|..++..
T Consensus 206 -----~~~~~~~G~S~ii~p~G~vl~~~~~~--~~~~~~id~~~~~~~r~~~~~~ 253 (261)
T cd07570 206 -----QDDLVFDGGSFIADNDGELLAEAPRF--EEDLADVDLDRLRSERRRNSSF 253 (261)
T ss_pred -----CceEEEECceEEEcCCCCEEEecCcc--eEEEEEEEEecCcccccccCCC
Confidence 45668999999999999999998744 7889999999999999888654
No 34
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=100.00 E-value=2.2e-43 Score=322.94 Aligned_cols=242 Identities=38% Similarity=0.619 Sum_probs=215.8
Q ss_pred EEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCHH
Q 019166 27 ATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPE 106 (345)
Q Consensus 27 Ia~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 106 (345)
||++|+++.+.+.++|++++.+++++|.++|+|||||||++++||.... ..... ..+.......
T Consensus 1 ia~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l~g~~~~~-------------~~~~~---~~~~~~~~~~ 64 (253)
T cd07197 1 IAAVQLAPKIGDVEANLAKALRLIKEAAEQGADLIVLPELFLTGYSFES-------------AKEDL---DLAEELDGPT 64 (253)
T ss_pred CEEEEccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccccCCcccc-------------chhhh---hhcccCCchH
Confidence 6899999998999999999999999999999999999999999998421 11100 1123445678
Q ss_pred HHHHHHHHHhcCeEEEEeeEEeeCCeeEEEEEEECCCCceEeeeecCCCCc-cccceeccCCCCCCCeEEcCCCcEEEEe
Q 019166 107 VERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTA-LERIIWGFGDGSTIPVFETPIGKIGAAI 185 (345)
Q Consensus 107 l~~l~~~a~~~~i~iv~G~~~~~~~~~yNt~~vi~p~G~ii~~y~K~~l~~-~E~~~f~~~~G~~~~vf~~~~~rigv~I 185 (345)
++.++++|++++++|++|+++++++++||++++++|+|+++..|+|.||++ .|..+|. +|+...+|+++++|+|++|
T Consensus 65 ~~~l~~~a~~~~i~ii~G~~~~~~~~~~N~~~~i~~~G~i~~~~~K~~l~~~~E~~~~~--~g~~~~~f~~~~~~ig~~I 142 (253)
T cd07197 65 LEALAELAKELGIYIVAGIAEKDGDKLYNTAVVIDPDGEIIGKYRKIHLFDFGERRYFS--PGDEFPVFDTPGGKIGLLI 142 (253)
T ss_pred HHHHHHHHHHhCeEEEeeeEEccCCceEEEEEEECCCCeEEEEEEEeecCCCcccceec--CCCCCceEEcCCceEEEEE
Confidence 999999999999999999998888899999999999999999999999988 7887776 5667899999999999999
Q ss_pred ecCCCchHHHHHHHHCCCeEEEEcCCCC---hhhHhhhhhheeeecCeEEEEeCcccccCCCCCCCCCccCCCcCCCCCC
Q 019166 186 CWENRMPLLRTAMYAKGIEIYCAPTADS---REVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSGTEQDLTPD 262 (345)
Q Consensus 186 C~D~~fpe~~r~~~~~ga~li~~ps~~~---~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~~~~~~~~~~~~ 262 (345)
|||.+||++.+.+..+|+|+|++|+++. ..+|..+++.||+||++|+++||++|. .+
T Consensus 143 C~d~~~~~~~~~~~~~g~dli~~ps~~~~~~~~~~~~~~~~~A~e~~~~vv~~n~~G~--------------------~~ 202 (253)
T cd07197 143 CYDLRFPELARELALKGADIILVPAAWPTARREHWELLLRARAIENGVYVVAANRVGE--------------------EG 202 (253)
T ss_pred EecCCCcHHHHHHHHCCCcEEEECCcCCCcchHHHHHHHHHHHHHhCCeEEEecCCCC--------------------CC
Confidence 9999999999999999999999999986 468889999999999999999999998 44
Q ss_pred CccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcC
Q 019166 263 SIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDF 307 (345)
Q Consensus 263 ~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~ 307 (345)
+..+.|.|+|++|+|++++..+.+ ++++++++|++.+++.|..+
T Consensus 203 ~~~~~G~S~i~~p~G~~~~~~~~~-~~~~~~~id~~~~~~~r~~~ 246 (253)
T cd07197 203 GLEFAGGSMIVDPDGEVLAEASEE-EGILVAELDLDELREARKRW 246 (253)
T ss_pred CccccceeEEECCCCceeeecCCC-CcEEEEEeCHHHHHHHHhhC
Confidence 678999999999999999999867 99999999999999999876
No 35
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=100.00 E-value=2e-41 Score=314.07 Aligned_cols=216 Identities=23% Similarity=0.244 Sum_probs=191.2
Q ss_pred eEEEEEeccCCCC------ChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhc
Q 019166 25 VRATVVQASTIFY------DTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHAS 98 (345)
Q Consensus 25 ~rIa~vQ~~~~~~------d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (345)
+|||++|+++... |.++|++++.+++++|+++|+|||||||++++||.
T Consensus 1 ~~ia~~Q~~~~~~~~~~~~d~~~nl~~~~~~i~~a~~~ga~lvvfPE~~l~g~~-------------------------- 54 (270)
T cd07571 1 LRVALVQGNIPQDEKWDPEQRQATLDRYLDLTRELADEKPDLVVWPETALPFDL-------------------------- 54 (270)
T ss_pred CeEEEEeCCCCcccccCHHHHHHHHHHHHHHHhhcccCCCCEEEecCCcCCccc--------------------------
Confidence 5899999998765 78999999999999999999999999999999886
Q ss_pred ccCCCCHHHHHHHHHHHhcCeEEEEeeEEeeC--CeeEEEEEEECCCCceEeeeecCCCCcc------------------
Q 019166 99 AIDVPGPEVERLAAMAGKYKVYLVMGVIERDG--YTLYCTVLFFDSQGHFLGKHRKIMPTAL------------------ 158 (345)
Q Consensus 99 a~~~~~~~l~~l~~~a~~~~i~iv~G~~~~~~--~~~yNt~~vi~p~G~ii~~y~K~~l~~~------------------ 158 (345)
..+++.++.++++|++++++|++|+.++++ +++||++++++|+|+++.+|+|+||++.
T Consensus 55 --~~~~~~~~~l~~~ak~~~i~ii~G~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~~L~p~~e~~p~~~~~~~~~~~~~ 132 (270)
T cd07571 55 --QRDPDALARLARAARAVGAPLLTGAPRREPGGGRYYNSALLLDPGGGILGRYDKHHLVPFGEYVPLRDLLRFLGLLFD 132 (270)
T ss_pred --ccCHHHHHHHHHHHHhcCCeEEEeeeeeccCCCceEEEEEEECCCCCCcCcEeeeeccCCCCCcCcHHHHHHHHHhcc
Confidence 123467899999999999999999987665 4899999999999999999999988653
Q ss_pred -ccceeccCCCCCCCeEEcCC-CcEEEEeecCCCchHHHHHHHHCCCeEEEEcCCCC-------hhhHhhhhhheeeecC
Q 019166 159 -ERIIWGFGDGSTIPVFETPI-GKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADS-------REVWQASMTHIALEGG 229 (345)
Q Consensus 159 -E~~~f~~~~G~~~~vf~~~~-~rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~-------~~~~~~~~~~rA~en~ 229 (345)
|..+|. +|+++.+|++++ +|+|++||||.+|||++|.++.+||+++++|+++. ..+|..++++||+||+
T Consensus 133 ~e~~~~~--~G~~~~vf~~~~~~r~g~~IC~D~~fpe~~r~~~~~ga~iil~ps~~~~~~~~~~~~~~~~~~~arA~en~ 210 (270)
T cd07571 133 LPMGDFS--PGTGPQPLLLGGGVRVGPLICYESIFPELVRDAVRQGADLLVNITNDAWFGDSAGPYQHLAMARLRAIETG 210 (270)
T ss_pred cccCCCC--CCCCCCccccCCCceEEEEEEeeeeChHHHHhhcccCCCEEEEcCcccccCCCcchHHHHHHHHHHHHHhC
Confidence 344554 667889999999 99999999999999999999999999999999731 3456677899999999
Q ss_pred eEEEEeCcccccCCCCCCCCCccCCCcCCCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhH
Q 019166 230 CFVLSANQFCRRKDYPPPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGE 299 (345)
Q Consensus 230 ~~vv~~n~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~ 299 (345)
++|++||+.|. |+|+||+|+++++++.++++++++++|++.
T Consensus 211 ~~vv~~n~~G~-----------------------------S~ivdp~G~ii~~~~~~~e~~~~~~i~~~~ 251 (270)
T cd07571 211 RPLVRAANTGI-----------------------------SAVIDPDGRIVARLPLFEAGVLVAEVPLRT 251 (270)
T ss_pred CCEEEEcCCee-----------------------------eEEECCCCcEEeecCCCcceEEEEEeccCC
Confidence 99999998766 999999999999998788999999999866
No 36
>PRK13981 NAD synthetase; Provisional
Probab=100.00 E-value=2e-40 Score=334.89 Aligned_cols=232 Identities=25% Similarity=0.309 Sum_probs=199.9
Q ss_pred eEEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCC
Q 019166 25 VRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPG 104 (345)
Q Consensus 25 ~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 104 (345)
||||++|+++..+|++.|++++.+++++|+++|+|||||||++++||... +......+. .
T Consensus 1 mkIAl~Q~~~~~gd~~~N~~~i~~~i~~A~~~gadLIVfPEl~ltGy~~~-------------d~~~~~~~~-------~ 60 (540)
T PRK13981 1 LRIALAQLNPTVGDIAGNAAKILAAAAEAADAGADLLLFPELFLSGYPPE-------------DLLLRPAFL-------A 60 (540)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECcchhhcCCChh-------------hhhcCHHHH-------H
Confidence 79999999998899999999999999999999999999999999999832 211111111 1
Q ss_pred HHHHHHHHHHHh--cCeEEEEeeEEeeCCeeEEEEEEECCCCceEeeeecCCCCc----cccceeccCCCCCCCeEEcCC
Q 019166 105 PEVERLAAMAGK--YKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTA----LERIIWGFGDGSTIPVFETPI 178 (345)
Q Consensus 105 ~~l~~l~~~a~~--~~i~iv~G~~~~~~~~~yNt~~vi~p~G~ii~~y~K~~l~~----~E~~~f~~~~G~~~~vf~~~~ 178 (345)
...+.+.+++++ +++.|++|++++.++++||++++++ +|++++.|+|+|+.. .|..+|. +|+...+|++++
T Consensus 61 ~~~~~l~~La~~~~~~i~ii~G~~~~~~~~~yNsa~vi~-~G~i~~~y~K~~L~~~~~~~E~~~f~--~G~~~~~~~~~g 137 (540)
T PRK13981 61 ACEAALERLAAATAGGPAVLVGHPWREGGKLYNAAALLD-GGEVLATYRKQDLPNYGVFDEKRYFA--PGPEPGVVELKG 137 (540)
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCcEeeCCcEEEEEEEEE-CCeEEEEEeeeeCCCCCCcCcccccc--CCCCceEEEECC
Confidence 233455666655 7999999998888889999999998 899999999998753 4778887 566778999999
Q ss_pred CcEEEEeecCCCchHHHHHHHHCCCeEEEEcCCCC-----hhhHhhhhhheeeecCeEEEEeCcccccCCCCCCCCCccC
Q 019166 179 GKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADS-----REVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFS 253 (345)
Q Consensus 179 ~rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~-----~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~~~ 253 (345)
+|||++||||+|||++.+.++.+||++|++|++++ ..+|..++++||+||++|+++||++|.
T Consensus 138 ~rigv~IC~D~~~pe~~r~la~~Gadlil~psa~~~~~~~~~~~~~~~~~rA~En~~~vv~aN~vG~------------- 204 (540)
T PRK13981 138 VRIGVPICEDIWNPEPAETLAEAGAELLLVPNASPYHRGKPDLREAVLRARVRETGLPLVYLNQVGG------------- 204 (540)
T ss_pred EEEEEEEehhhcCCcHHHHHHHCCCcEEEEcCCCcccCCcHHHHHHHHHHHHHHhCCeEEEEecccC-------------
Confidence 99999999999999999999999999999999875 346778899999999999999999998
Q ss_pred CCcCCCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhH
Q 019166 254 GTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGE 299 (345)
Q Consensus 254 ~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~ 299 (345)
.+...|.|+|+|++|+|+++++++.++++++++++|++.
T Consensus 205 -------~~~~~f~G~S~i~dp~G~il~~~~~~~e~~l~~did~~~ 243 (540)
T PRK13981 205 -------QDELVFDGASFVLNADGELAARLPAFEEQIAVVDFDRGE 243 (540)
T ss_pred -------CCceEEeCceEEECCCCCEeeecCCCCCcEEEEEEeecC
Confidence 456789999999999999999998889999999999963
No 37
>PRK02628 nadE NAD synthetase; Reviewed
Probab=100.00 E-value=1.7e-39 Score=334.53 Aligned_cols=256 Identities=20% Similarity=0.243 Sum_probs=207.0
Q ss_pred CcceEEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccC
Q 019166 22 APTVRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAID 101 (345)
Q Consensus 22 ~~~~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 101 (345)
.+.||||++|+++..+|++.|++++.+++++|+++|||||||||++++||+. .+......+.+.+
T Consensus 10 ~~~mrIAlaQ~~~~~gD~~~Nl~~i~~~i~~A~~~gadLvVfPEL~ltGY~~-------------~dl~~~~~~~~~~-- 74 (679)
T PRK02628 10 HGFVRVAAATPKVRVADPAFNAARILALARRAADDGVALAVFPELSLSGYSC-------------DDLFLQDTLLDAV-- 74 (679)
T ss_pred CCcEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHCCCeEEEcccccccCCCc-------------chhhccHHHHHhh--
Confidence 4579999999999889999999999999999999999999999999999983 2322112222211
Q ss_pred CCCHHHHHHHHHHHhcCeEEEEeeEEeeCCeeEEEEEEECCCCceEeeeecCCCCc----cccceeccCCCCCC------
Q 019166 102 VPGPEVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTA----LERIIWGFGDGSTI------ 171 (345)
Q Consensus 102 ~~~~~l~~l~~~a~~~~i~iv~G~~~~~~~~~yNt~~vi~p~G~ii~~y~K~~l~~----~E~~~f~~~~G~~~------ 171 (345)
.+.++.|+++++++++.|++|++++.++++||++++++ +|++++.|+|+||+. .|.+||.+|..-..
T Consensus 75 --~~~l~~L~~~a~~~~i~ivvG~p~~~~~~lyNsa~vi~-~G~il~~y~K~hLp~~~~f~E~r~F~~G~~~~~~~~~~~ 151 (679)
T PRK02628 75 --EDALATLVEASADLDPLLVVGAPLRVRHRLYNCAVVIH-RGRILGVVPKSYLPNYREFYEKRWFAPGDGARGETIRLC 151 (679)
T ss_pred --HHHHHHHHHHHhhcCEEEEEeeEEEECCEEEEEEEEEc-CCEEEEEeccccCCCCCcccccccccCCCCCCCceEeec
Confidence 35788999999999999999998877889999999998 899999999999863 48999986542101
Q ss_pred ---------CeEEc---CCCcEEEEeecCCCchHH-HHHHHHCCCeEEEEcCCCC----hhhH-hhhhhheeeecCeEEE
Q 019166 172 ---------PVFET---PIGKIGAAICWENRMPLL-RTAMYAKGIEIYCAPTADS----REVW-QASMTHIALEGGCFVL 233 (345)
Q Consensus 172 ---------~vf~~---~~~rigv~IC~D~~fpe~-~r~~~~~ga~li~~ps~~~----~~~~-~~~~~~rA~en~~~vv 233 (345)
.+|++ +++|||+.||||+||||. .+.++++|||||++|++++ ..+| ..+.+++|.++++++|
T Consensus 152 g~~vpfG~~~vf~~~~~~g~kiGv~IC~DlwfPe~~~~~la~~GAdIil~psAsp~~~gk~~~r~~l~~~~aar~~~~~v 231 (679)
T PRK02628 152 GQEVPFGTDLLFEAEDLPGFVFGVEICEDLWVPIPPSSYAALAGATVLANLSASNITVGKADYRRLLVASQSARCLAAYV 231 (679)
T ss_pred CeeeccCCceeEEecccCCcEEEEEEeccccccCchhhHHhcCCCEEEEeCCCCCcccCcHHHHHHHHHHHHHHhCcEEE
Confidence 24655 689999999999999997 5889999999999999985 2244 4667788888866666
Q ss_pred EeCcccccCCCCCCCCCccCCCcCCCCCCCccccceeEEECCCCcccccCCC--CCceEEEEEechhHHHHhhhcCCCCC
Q 019166 234 SANQFCRRKDYPPPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNY--DGEALISADLDLGEIARAKFDFDVVG 311 (345)
Q Consensus 234 ~~n~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~--~~e~~l~~~idl~~~~~~r~~~~~~~ 311 (345)
++|+.+++ ..++..|.|+|+|++ +|+++++++. .++++++++||++.++..|..++++.
T Consensus 232 ~~n~~~G~------------------~~~~~vf~G~S~I~~-~G~vla~a~~f~~~e~l~~adiDl~~v~~~R~~~~~~~ 292 (679)
T PRK02628 232 YAAAGVGE------------------STTDLAWDGQTLIYE-NGELLAESERFPREEQLIVADVDLERLRQERLRNGSFD 292 (679)
T ss_pred EEeccccc------------------CCCCeEEeCeEEEEc-CCeEEEecCCCCCCCcEEEEEEcHHHHHHHHhhcCCcc
Confidence 77654431 145678999999998 9999999874 34569999999999999999888876
Q ss_pred CCCC
Q 019166 312 HYSR 315 (345)
Q Consensus 312 ~~rr 315 (345)
. |+
T Consensus 293 d-~~ 295 (679)
T PRK02628 293 D-NA 295 (679)
T ss_pred c-ch
Confidence 4 44
No 38
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=100.00 E-value=6.8e-39 Score=299.97 Aligned_cols=214 Identities=21% Similarity=0.258 Sum_probs=169.7
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHHHh----CCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccC
Q 019166 26 RATVVQASTIFYDTPATLGKAERLLAEAAG----YGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAID 101 (345)
Q Consensus 26 rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~----~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 101 (345)
|||++|+++..+|.+.|++++.+++++|++ +|+|||||||++++||.. .+......+.+. .
T Consensus 1 rIA~vQ~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~gadLIVfPEl~ltGY~~-------------~~~~~~~~~ae~--~ 65 (295)
T cd07566 1 RIACLQLNPQIGQVEENLSRAWELLDKTKKRAKLKKPDILVLPELALTGYNF-------------HSLEHIKPYLEP--T 65 (295)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhhccCCCCcEEEcCCCCcccCCc-------------ccHHHHHHHHHh--c
Confidence 699999998878999999999999999988 899999999999999973 222222222221 2
Q ss_pred CCCHHHHHHHHHHHhcCeEEEEeeEEeeC---CeeEEEEEEECCCCceEeeeecCCCCccccceeccC------------
Q 019166 102 VPGPEVERLAAMAGKYKVYLVMGVIERDG---YTLYCTVLFFDSQGHFLGKHRKIMPTALERIIWGFG------------ 166 (345)
Q Consensus 102 ~~~~~l~~l~~~a~~~~i~iv~G~~~~~~---~~~yNt~~vi~p~G~ii~~y~K~~l~~~E~~~f~~~------------ 166 (345)
..++.++.++++|++++++|++|++++.+ +++|||+++|+|+|+++++|+|+||+..|..++..+
T Consensus 66 ~~g~~~~~l~~lAk~~~i~Iv~G~~e~~~~~~~~~yNta~vi~~~G~ii~~YrK~HL~~~~~~~~~~e~~~~~~~~~~~~ 145 (295)
T cd07566 66 TSGPSFEWAREVAKKFNCHVVIGYPEKVDESSPKLYNSALVVDPEGEVVFNYRKSFLYYTDEEWGCEENPGGFQTFPLPF 145 (295)
T ss_pred CCCHHHHHHHHHHHhcCCEEEEeeeEecCCCCCceEEEEEEEcCCCeEEEEEeccccCCCCcccccCCCCCccccccccc
Confidence 34688999999999999999999987754 489999999999999999999999986543222110
Q ss_pred CCCCCC--eEEcCCCcEEEEeecCCC---c--h----HHHHHHHHCCCeEEEEcCCCCh-------------------hh
Q 019166 167 DGSTIP--VFETPIGKIGAAICWENR---M--P----LLRTAMYAKGIEIYCAPTADSR-------------------EV 216 (345)
Q Consensus 167 ~G~~~~--vf~~~~~rigv~IC~D~~---f--p----e~~r~~~~~ga~li~~ps~~~~-------------------~~ 216 (345)
+|+... ++.+.++|||++||||++ | | |+.|.++++|||||++|++|+. .+
T Consensus 146 ~G~~~~~~~~~~~~~kiG~~ICyDl~~~rF~~P~~~~E~~r~la~~Gadii~~paaw~~~~~~~~~~~~~~~~~~~~~~~ 225 (295)
T cd07566 146 AKDDDFDGGSVDVTLKTSIGICMDLNPYKFEAPFTDFEFATHVLDNGTELIICPMAWLHSLSPTELTVLPQEPDTETVSY 225 (295)
T ss_pred cccccccccccCCcceeEEEEEecCCcccccCCcchHHHHHHHHHCCCCEEEEechhcCCCCcccccccCCCcchhHHHH
Confidence 333322 234457899999999996 7 5 9999999999999999999841 23
Q ss_pred Hhhhh-hhee-eecCeEEEEeCcccccCCCCCCCCCccCCCcCCCCCCCccccceeEEEC
Q 019166 217 WQASM-THIA-LEGGCFVLSANQFCRRKDYPPPPEYEFSGTEQDLTPDSIVCAGGSVIIS 274 (345)
Q Consensus 217 ~~~~~-~~rA-~en~~~vv~~n~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~S~ii~ 274 (345)
|+..+ ++|| .||++||+.||++|. .++..|.|+|+|+.
T Consensus 226 ~~~ra~~~~a~~eN~~~vv~~Nr~G~--------------------~~~~~f~G~S~i~~ 265 (295)
T cd07566 226 WLQRFEPLRAEPLEGTQVVFCNRIGT--------------------ENDTLYAGSSAVIG 265 (295)
T ss_pred HHHhhcccccCCCCceEEEEEeccCc--------------------cCCceecCccceee
Confidence 44444 4455 599999999999999 45678999999995
No 39
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=100.00 E-value=1.2e-38 Score=327.60 Aligned_cols=250 Identities=16% Similarity=0.105 Sum_probs=195.5
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCC
Q 019166 24 TVRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVP 103 (345)
Q Consensus 24 ~~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 103 (345)
.||||++|+++..+|.+.|++++.+++++|+++|||||||||+++|||++ .+........+.+
T Consensus 3 ~mrIAlaQl~~~~gD~~~N~~~I~~~I~~A~~~gAdLvVfPEL~lTGY~~-------------~Dl~~~~~~~~~~---- 65 (700)
T PLN02339 3 LLKVATCNLNQWAMDFDGNLKRIKESIAEAKAAGAVYRVGPELEITGYGC-------------EDHFLELDTVTHS---- 65 (700)
T ss_pred eEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccCCCCh-------------HHHhhChhHHHHH----
Confidence 69999999998888999999999999999999999999999999999983 2221111111111
Q ss_pred CHHHHHHHHHHHhcCeEEEEeeEEeeCCeeEEEEEEECCCCceEeeeecCCCCc----cccceeccCC------------
Q 019166 104 GPEVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTA----LERIIWGFGD------------ 167 (345)
Q Consensus 104 ~~~l~~l~~~a~~~~i~iv~G~~~~~~~~~yNt~~vi~p~G~ii~~y~K~~l~~----~E~~~f~~~~------------ 167 (345)
.+.++.|.+.++++++.+++|+++..++++||+++++. +|++++.|+|+||+. .|.+||.+|.
T Consensus 66 ~~~L~~La~~a~~~~i~vvvG~p~~~~~~lYN~a~vi~-~GkIlg~y~K~hLpny~~f~E~r~F~pG~~~~~~~~~~l~~ 144 (700)
T PLN02339 66 WECLAEILVGDLTDGILCDIGMPVIHGGVRYNCRVFCL-NRKILLIRPKMWLANDGNYRELRWFTAWKHKKKVEDFQLPE 144 (700)
T ss_pred HHHHHHHHhhcccCCeEEEEeeeEEECCeEEEEEEEEe-CCEEEEEEecccCCCCCccccccccccCccCCcceeecccc
Confidence 13455566655678999999999877789999999996 899999999999863 4899998753
Q ss_pred ------CCC-----CCeEEcCCCcEEEEeecCCCchHHHHH-HHHCCCeEEEEcCCCChhh------HhhhhhheeeecC
Q 019166 168 ------GST-----IPVFETPIGKIGAAICWENRMPLLRTA-MYAKGIEIYCAPTADSREV------WQASMTHIALEGG 229 (345)
Q Consensus 168 ------G~~-----~~vf~~~~~rigv~IC~D~~fpe~~r~-~~~~ga~li~~ps~~~~~~------~~~~~~~rA~en~ 229 (345)
|.. ..+|++++++||+.||||+|||+..+. ++++||+||++|+++.... ++.+....+..++
T Consensus 145 ~~~~~~g~~~vpfg~~~~~~~g~~iGv~ICeDlwfPe~p~~~lAl~GAdII~n~sas~~~~gK~~~R~rai~n~sa~~~~ 224 (700)
T PLN02339 145 EIAEATSQKSVPFGDGYLQFLDTAVAAETCEELFTPQAPHIDLALNGVEIISNGSGSHHQLRKLNTRLDLIRSATHKCGG 224 (700)
T ss_pred chhhccCCceeccCcceeecCCeEEEEEEecccCCChHHHHHHHHcCCeEEEECCCChhhcCCHHHHHHHHHHHHHHhCC
Confidence 110 235566778999999999999999885 9999999999999874321 2223333444447
Q ss_pred eEEEEeCcccccCCCCCCCCCccCCCcCCCCCCCccccceeEEECCCCcccccCCCC---CceEEEEEechhHHHHhhhc
Q 019166 230 CFVLSANQFCRRKDYPPPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYD---GEALISADLDLGEIARAKFD 306 (345)
Q Consensus 230 ~~vv~~n~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~---~e~~l~~~idl~~~~~~r~~ 306 (345)
+| |+||++|.+ .+...|.|+|+|. |+|+++++++.+ ++.+++++||++.++..|..
T Consensus 225 ~y-vyaN~~Ge~-------------------~~~lvf~G~S~I~-~~G~ilaea~~F~~~~~~vi~adIDl~~l~~~R~~ 283 (700)
T PLN02339 225 VY-LYANQRGCD-------------------GGRLYYDGCACIV-VNGEVVAQGSQFSLQDVEVVTACVDLDAVVSFRGS 283 (700)
T ss_pred cE-EEEcCCccC-------------------CCceEEcCceEEe-CCCcEeEecCCcccCCceEEEEEEehHHhhhHhhc
Confidence 77 689998861 3456788999885 799999998764 56799999999999999988
Q ss_pred CCCCCC
Q 019166 307 FDVVGH 312 (345)
Q Consensus 307 ~~~~~~ 312 (345)
.+.+..
T Consensus 284 ~~~~~~ 289 (700)
T PLN02339 284 ISSFRE 289 (700)
T ss_pred CCchhh
Confidence 877653
No 40
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.5e-39 Score=292.33 Aligned_cols=267 Identities=25% Similarity=0.338 Sum_probs=229.6
Q ss_pred CcceEEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccC
Q 019166 22 APTVRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAID 101 (345)
Q Consensus 22 ~~~~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 101 (345)
..++++|++|......+...|+...+..+++|+++|++||||||.+++||.+. ..+..+.|...+
T Consensus 11 ~~~~~~a~vq~~~~l~~~~~Ni~~~~~~i~~aa~~g~~iIv~PE~~~~gy~~~---------------~sf~py~E~i~~ 75 (298)
T KOG0806|consen 11 LPNATEALVSLEEALLLMNENIDILEKAVKEAAKQGAKIIVFPEDGLYGYNFT---------------ESFYPYLEDIPD 75 (298)
T ss_pred ccccceeeeecccchhhhhhhHHHHHHHHHHHHhcCCeEEEChhhcccccccc---------------ccccchhhhCCC
Confidence 35689999999999889999999999999999999999999999999999841 122334443333
Q ss_pred C--CCHHHHHHHHHHHhcCeEEEEeeEEee--CCeeEEEEEEECCCCceEeeeecCCCCccc-------cceeccCCCCC
Q 019166 102 V--PGPEVERLAAMAGKYKVYLVMGVIERD--GYTLYCTVLFFDSQGHFLGKHRKIMPTALE-------RIIWGFGDGST 170 (345)
Q Consensus 102 ~--~~~~l~~l~~~a~~~~i~iv~G~~~~~--~~~~yNt~~vi~p~G~ii~~y~K~~l~~~E-------~~~f~~~~G~~ 170 (345)
. .++.+..++++|++++|+++.|+++.. ++++||++.+++++|+.+..|||.|++..+ +++....+|..
T Consensus 76 ~~~~~ps~~~ls~va~~~~~~~i~g~i~~~~~~~k~yns~~~~~~~g~l~~~yrk~hlFD~d~~~~~ry~e~~~~~~g~~ 155 (298)
T KOG0806|consen 76 PGCRDPSRQGLSEVAERLSCYIIGGSIEEEALGDKLYNSCADSSCPGDGLAKYRKNHLFDTDGPGVIRYRESHLLSPGDQ 155 (298)
T ss_pred cccCChhHHHhHHHHhhceEEEecCcchhhcccccccCcccccCCCcchhheeeeeEEeccCCccceeeeeeeccCCCcC
Confidence 1 468999999999999999999998654 579999999999999999999999998642 22223347788
Q ss_pred CCeEEcCCCcEEEEeecCCCchHHHHHHHHCCCeEEEEcCCCC-------hhhHhhhhhheeeecCeEEEEeCcccccCC
Q 019166 171 IPVFETPIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADS-------REVWQASMTHIALEGGCFVLSANQFCRRKD 243 (345)
Q Consensus 171 ~~vf~~~~~rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~-------~~~~~~~~~~rA~en~~~vv~~n~~G~~~~ 243 (345)
+.+++++.||||+.||||++|||+++.++++||++|+.|++|. ..+|..++++||..|..+++.++..+..
T Consensus 156 f~~~~~~~gkfGi~IC~Di~F~d~A~~~~~~g~~~ivyPtaw~~~~l~~~~~hw~~~~~~~a~~n~~~v~~~s~~~~~-- 233 (298)
T KOG0806|consen 156 FTVVDTSYGKFGIFICFDIRFYDPAMILVKDGADLIVYPTAWNNELLSAVPLHWALLMRARANDNAANVHAPSPARTG-- 233 (298)
T ss_pred CCcccCCCCceEEEEEecccccchHHHHHHcCCcEEEecchHhhhcccccchHHHHHHhCCcccceeeeeccCcCcCC--
Confidence 9999999999999999999999999999999999999999985 5699999999999999999999988772
Q ss_pred CCCCCCCccCCCcCCCCCCCccccc-eeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcCCCCCCCCCccceeee
Q 019166 244 YPPPPEYEFSGTEQDLTPDSIVCAG-GSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLSLV 322 (345)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~G-~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~~~~~rr~~ly~~~ 322 (345)
...+...| +|.+.+|.|++|+... .++.++++++|++.+.+.|+.++++. +||+|+|...
T Consensus 234 -----------------s~~y~~~gshs~~~~p~gkvl~a~~-~~~e~~~a~~d~~~~~~~rq~~~~~~-~r~~d~y~~~ 294 (298)
T KOG0806|consen 234 -----------------SGIYAPRGSHSIMVNPTGKVLAAAV-EKEEIIYADVDPSAIASRRQGLPVFR-QRRLDLYSLD 294 (298)
T ss_pred -----------------ceeeecCCcceeecCCcceEeeecc-CCCccccccCCHHHHHHHhcccchhh-ccchhhhhhh
Confidence 34556677 9999999999999986 55569999999999999999999876 5999999876
Q ss_pred ee
Q 019166 323 VR 324 (345)
Q Consensus 323 ~~ 324 (345)
..
T Consensus 295 ~~ 296 (298)
T KOG0806|consen 295 LF 296 (298)
T ss_pred cc
Confidence 54
No 41
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed
Probab=100.00 E-value=5e-34 Score=286.36 Aligned_cols=216 Identities=20% Similarity=0.188 Sum_probs=180.6
Q ss_pred cceEEEEEeccCCC------CChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHH
Q 019166 23 PTVRATVVQASTIF------YDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYH 96 (345)
Q Consensus 23 ~~~rIa~vQ~~~~~------~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (345)
+++|||++|.++.. .+.++|++++.++++++ ++++|+|||||.+++++..
T Consensus 218 ~~~~ValvQ~ni~~~~k~~~~~~~~~l~~~~~~~~~~-~~~~dlvV~PE~a~p~~~~----------------------- 273 (505)
T PRK00302 218 PALKVALVQGNIPQSLKWDPAGLEATLQKYLDLSRPA-LGPADLIIWPETAIPFLLE----------------------- 273 (505)
T ss_pred CCcEEEEECCCCChhcccCHHHHHHHHHHHHHHHhcc-cCCCCEEEeCCcccccccc-----------------------
Confidence 46999999999875 35678999999999854 5789999999998876530
Q ss_pred hcccCCCCHHHHHHHHHHHhcCeEEEEeeEEeeC---C-eeEEEEEEECCCCceEeeeecCCCCc-ccc-----------
Q 019166 97 ASAIDVPGPEVERLAAMAGKYKVYLVMGVIERDG---Y-TLYCTVLFFDSQGHFLGKHRKIMPTA-LER----------- 160 (345)
Q Consensus 97 ~~a~~~~~~~l~~l~~~a~~~~i~iv~G~~~~~~---~-~~yNt~~vi~p~G~ii~~y~K~~l~~-~E~----------- 160 (345)
+...+..+.++++++++++.+++|..++++ + ++||++++++| |+++.+|+|+||.+ +|.
T Consensus 274 ----~~~~~~~~~l~~~a~~~~~~il~G~~~~~~~~~~~~~yNsa~~i~~-g~~~~~Y~K~~LvPfgE~~P~~~~~~~~~ 348 (505)
T PRK00302 274 ----DLPQAFLKALDDLAREKGSALITGAPRAENKQGRYDYYNSIYVLGP-YGILNRYDKHHLVPFGEYVPLESLLRPLA 348 (505)
T ss_pred ----cccHHHHHHHHHHHHhCCCEEEEecccccCCCCCCceeeEEEEECC-CCCcCcccccccCCCcCCCChHHHHHHHH
Confidence 112245678999999999999999886532 3 69999999998 78999999999865 331
Q ss_pred -------ceeccCCCC-CCCeEEcCCCcEEEEeecCCCchHHHHHHHHCCCeEEEEcCCCC-------hhhHhhhhhhee
Q 019166 161 -------IIWGFGDGS-TIPVFETPIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADS-------REVWQASMTHIA 225 (345)
Q Consensus 161 -------~~f~~~~G~-~~~vf~~~~~rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~-------~~~~~~~~~~rA 225 (345)
..| .+|+ ...+++++++|+|++||||..|||+.|.++.+|+|++++|+|+. ..+|..++++||
T Consensus 349 ~~~~~~~~~~--~~G~~~~~v~~~~~~~ig~~ICyE~~fpe~~r~~~~~ga~~lv~~snd~Wf~~~~~~~qh~~~~~~RA 426 (505)
T PRK00302 349 PFFNLPMGDF--SRGPYVQPPLLAKGLKLAPLICYEIIFPEEVRANVRQGADLLLNISNDAWFGDSIGPYQHFQMARMRA 426 (505)
T ss_pred HhcCCCcCCC--CCCCCCCCCcccCCceEEEEEeehhcChHHHHhhccCCCCEEEEccchhhcCCCCchHHHHHHHHHHH
Confidence 123 3666 67899999999999999999999999999999999999999842 335666789999
Q ss_pred eecCeEEEEeCcccccCCCCCCCCCccCCCcCCCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechh
Q 019166 226 LEGGCFVLSANQFCRRKDYPPPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLG 298 (345)
Q Consensus 226 ~en~~~vv~~n~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~ 298 (345)
+||++++++||+.|. |+++||+|+++++.+.++++++++++|+.
T Consensus 427 iEng~~vvra~n~G~-----------------------------Saiidp~G~i~~~~~~~~~~~l~~~i~~~ 470 (505)
T PRK00302 427 LELGRPLIRATNTGI-----------------------------TAVIDPLGRIIAQLPQFTEGVLDGTVPPT 470 (505)
T ss_pred HHhCCceEEecCcee-----------------------------eEEECCCCCEeeecCCCceeEEEEEeccC
Confidence 999999999998777 99999999999999989999999999874
No 42
>TIGR00546 lnt apolipoprotein N-acyltransferase. This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.
Probab=100.00 E-value=6.9e-34 Score=276.86 Aligned_cols=199 Identities=24% Similarity=0.266 Sum_probs=168.2
Q ss_pred CcceEEEEEeccCCCC------ChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHH
Q 019166 22 APTVRATVVQASTIFY------DTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKY 95 (345)
Q Consensus 22 ~~~~rIa~vQ~~~~~~------d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (345)
.+++||+++|.++... +.++|++++.+++++|.+ ++|||||||+++++|..
T Consensus 157 ~~~~~ValvQ~n~~~~~k~~~~~~~~~~~~~~~~~~~a~~-~~dlVv~PE~a~~~~~~---------------------- 213 (391)
T TIGR00546 157 GPTLNVALVQPNIPQDLKFDSEGLEAILEILTSLTKQAVE-KPDLVVWPETAFPFDLE---------------------- 213 (391)
T ss_pred CCcceEEEEcCCCCcccccChhhHHHHHHHHHHHHhccCC-CCCEEEcCccccccchh----------------------
Confidence 3569999999998754 357899999999998876 89999999999998751
Q ss_pred HhcccCCCCHHHHHHHHHHHhcCeEEEEeeEEeeCC---eeEEEEEEECCCCceEeeeecCCCCc-ccc-----------
Q 019166 96 HASAIDVPGPEVERLAAMAGKYKVYLVMGVIERDGY---TLYCTVLFFDSQGHFLGKHRKIMPTA-LER----------- 160 (345)
Q Consensus 96 ~~~a~~~~~~~l~~l~~~a~~~~i~iv~G~~~~~~~---~~yNt~~vi~p~G~ii~~y~K~~l~~-~E~----------- 160 (345)
+.+.+..+.++++++++++.+++|..+.+++ ++||++++++|+|+++.+|+|+||.+ +|.
T Consensus 214 -----~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~yNsa~~~~~~G~~~~~Y~K~~LvPfgEyiP~~~~~~~~~ 288 (391)
T TIGR00546 214 -----NSPQKLADRLKLLVLSKGIPILIGAPDAVPGGPYHYYNSAYLVDPGGEVVQRYDKVKLVPFGEYIPLGFLFKWLS 288 (391)
T ss_pred -----hCcHHHHHHHHHHHHhCCCEEEEecccccCCCCCceeeEEEEECCCCCccccccceeccCCcCCCChHHHHHHHH
Confidence 0112357889999999999999998865432 79999999999999999999999765 331
Q ss_pred --------ceeccCCCCCCCeEEcCCCcEEEEeecCCCchHHHHHHHHCCCeEEEEcCCCC-------hhhHhhhhhhee
Q 019166 161 --------IIWGFGDGSTIPVFETPIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADS-------REVWQASMTHIA 225 (345)
Q Consensus 161 --------~~f~~~~G~~~~vf~~~~~rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~-------~~~~~~~~~~rA 225 (345)
..| .+|++..+++++++|+|++||||..|||+.|.++++|||++++|++++ ..+|..+.++||
T Consensus 289 ~~~~~~~~~~~--~~G~~~~~~~~~~~~~g~~ICyE~~fp~~~r~~~~~Ga~~lv~~snd~wf~~s~~~~qh~~~~~~RA 366 (391)
T TIGR00546 289 KLFFLLSQEDF--SRGPGPQVLKLPGGKIAPLICYESIFPDLVRASARQGAELLVNLTNDAWFGDSSGPWQHFALARFRA 366 (391)
T ss_pred HHhccCCccCC--CCCCCCCCCcCCCceeeeeEEeehhchHHHHhhccCCCCEEEEecchhhcCCCCChHHHHHHHHHHH
Confidence 123 367788999999999999999999999999999999999999999853 346667789999
Q ss_pred eecCeEEEEeCcccccCCCCCCCCCccCCCcCCCCCCCccccceeEEECCCCcc
Q 019166 226 LEGGCFVLSANQFCRRKDYPPPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSV 279 (345)
Q Consensus 226 ~en~~~vv~~n~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~S~ii~p~G~v 279 (345)
+||++++++||++|. |+++||+|++
T Consensus 367 iEn~~~vvra~n~G~-----------------------------S~vidp~G~i 391 (391)
T TIGR00546 367 IENGRPLVRATNTGI-----------------------------SAVIDPRGRT 391 (391)
T ss_pred HHhCCcEEEecCCce-----------------------------eEEECCCCCC
Confidence 999999999999887 9999999985
No 43
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=100.00 E-value=4.9e-32 Score=236.94 Aligned_cols=174 Identities=37% Similarity=0.611 Sum_probs=143.9
Q ss_pred EEEEEeccC--CCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCC
Q 019166 26 RATVVQAST--IFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVP 103 (345)
Q Consensus 26 rIa~vQ~~~--~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 103 (345)
|||++|+++ ...|.++|++++.+++++|+++++|||||||++++||.... ........+.+.++...
T Consensus 1 ~VA~~Q~~~~~~~~~~~~n~~~i~~~~~~a~~~~~dlvv~PE~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~ 69 (186)
T PF00795_consen 1 RVALVQLNIDQSWGDPEENLKKILSLIEEAARQGADLVVFPEMALPGYPNPG-----------WCEDDFADLDEFAEPLD 69 (186)
T ss_dssp EEEEEEB-B-SSTTHHHHHHHHHHHHHHHHHHTTESEEEEETTTTTCS-GGG-----------SGHSSHHHHHHHHBHST
T ss_pred CEEEEECCccCccCCHHHHHHHHHHHHHHHHHCCCCEEEcCcchhccccccc-----------ccccccchhhhhccccc
Confidence 799999997 67899999999999999999999999999999999994110 00111223333344555
Q ss_pred CHHHHHHHHHHHhcCeEEEEeeEEeeCCeeEEEEEEECCCCceEeeeecCCCCc----c-ccceeccCCCCCCCeEEcC-
Q 019166 104 GPEVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTA----L-ERIIWGFGDGSTIPVFETP- 177 (345)
Q Consensus 104 ~~~l~~l~~~a~~~~i~iv~G~~~~~~~~~yNt~~vi~p~G~ii~~y~K~~l~~----~-E~~~f~~~~G~~~~vf~~~- 177 (345)
++.++.+.++|+++++++++|.++++++++||++++++|+|++++.|+|.||.+ . |+.+|.++ |....+|+++
T Consensus 70 ~~~~~~l~~~a~~~~~~i~~G~~~~~~~~~~N~~~~~~~~g~~~~~y~K~~lvpf~~~~P~~~~~~~g-~~~~~~~~~~~ 148 (186)
T PF00795_consen 70 GPYLERLAELAKENGITIVAGIPERDDGGLYNSAVVIDPDGEILGRYRKIHLVPFGEYIPERRYFSPG-GDPFPVFETPV 148 (186)
T ss_dssp SHHHHHHHHHHHHHTSEEEEEEEEEETTEEEEEEEEEETTSEEEEEEEGSSTCSTTTTTTHHHHSBEE-SSESEEEEETE
T ss_pred cHHHHHHHHHHHhcCCcccccccccccccccceeEEEEeeecccccccceeeeccccccccceeeeec-cceeeeeecce
Confidence 889999999999999999999999999999999999999999999999999932 2 66777654 4556677775
Q ss_pred ----CCcEEEEeecCCCchHHHHHHHHCCCeEEEEcCC
Q 019166 178 ----IGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTA 211 (345)
Q Consensus 178 ----~~rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~ 211 (345)
++|||++||||.+||++++.++.+||+++++|||
T Consensus 149 ~~~~g~~ig~~ICyd~~fp~~~~~~~~~ga~il~~~sa 186 (186)
T PF00795_consen 149 FDFGGGRIGVLICYDLRFPELVRELAKQGADILINPSA 186 (186)
T ss_dssp TEETTEEEEEEEGGGGGSHHHHHHHHHTTESEEEEEE-
T ss_pred eeeccceEEEEEEcccCChHHHHHHHHCCCCEEEeCCC
Confidence 6999999999999999999999999999999986
No 44
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.97 E-value=9.2e-31 Score=229.96 Aligned_cols=283 Identities=26% Similarity=0.347 Sum_probs=233.4
Q ss_pred ceEEEEEeccCCCC-------ChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHH
Q 019166 24 TVRATVVQASTIFY-------DTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYH 96 (345)
Q Consensus 24 ~~rIa~vQ~~~~~~-------d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (345)
.+||+++|-.+... +..+-.+++..+|+.|+..|+.+|+|.|.|..+|.+ + ..+...|.
T Consensus 73 ~vrvgliqn~i~lpttapv~eq~~aih~r~kaiieaaa~agvniiclqeawtmpfaf----c----------trerlpwt 138 (387)
T KOG0808|consen 73 VVRVGLIQNSIALPTTAPVSEQTRAIHDRLKAIIEAAAVAGVNIICLQEAWTMPFAF----C----------TRERLPWT 138 (387)
T ss_pred EEEEeeecccccCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccEEEeehhhcCchhh----h----------ccccCchh
Confidence 58999999886532 245677888999999999999999999999998862 1 12223466
Q ss_pred hcccCCC-CHHHHHHHHHHHhcCeEEEEeeEEee---CCeeEEEEEEECCCCceEeeeecCCCCc----cccceeccCCC
Q 019166 97 ASAIDVP-GPEVERLAAMAGKYKVYLVMGVIERD---GYTLYCTVLFFDSQGHFLGKHRKIMPTA----LERIIWGFGDG 168 (345)
Q Consensus 97 ~~a~~~~-~~~l~~l~~~a~~~~i~iv~G~~~~~---~~~~yNt~~vi~p~G~ii~~y~K~~l~~----~E~~~f~~~~G 168 (345)
+.|+..+ +++.++++++|++|++.|+....|++ +..++||+++|+.+|.+++++||.|... .|+.|+..+.
T Consensus 139 efaesv~~gptt~flqklakkhdmvivspilerd~ehgdvlwntavvisn~g~vigk~rknhiprvgdfnestyymeg~- 217 (387)
T KOG0808|consen 139 EFAESVDTGPTTKFLQKLAKKHDMVIVSPILERDIEHGDVLWNTAVVISNNGNVIGKHRKNHIPRVGDFNESTYYMEGD- 217 (387)
T ss_pred hhccccccCchHHHHHHHHhhCCeEEEehhhhcccccCceeeeeeEEEccCCceecccccccCCcccccCcceeEeecC-
Confidence 7777777 89999999999999999999988775 5689999999999999999999998653 5888876443
Q ss_pred CCCCeEEcCCCcEEEEeecCCCchHHHHHHHHCCCeEEEEcCCCC----hhhHhhhhhheeeecCeEEEEeCcccccCCC
Q 019166 169 STIPVFETPIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADS----REVWQASMTHIALEGGCFVLSANQFCRRKDY 244 (345)
Q Consensus 169 ~~~~vf~~~~~rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~----~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~ 244 (345)
...+||+|.+||||+-|||-..+|.-|..+..+||+||++|++.- ...|-.-++..|+.|.+++...|++|.+ ..
T Consensus 218 lghpvfet~fgriavnicygrhhplnwlmy~lngaeiifnpsatvgalseplwpiearnaaianh~ft~~inrvgte-vf 296 (387)
T KOG0808|consen 218 LGHPVFETVFGRIAVNICYGRHHPLNWLMYGLNGAEIIFNPSATVGALSEPLWPIEARNAAIANHYFTGSINRVGTE-VF 296 (387)
T ss_pred CCCceeeeecceEEEEeeccCCCchhhhhhhccCceEEECCccccccccCccCchhhhhhhhhhceEEEeecccccc-cC
Confidence 357999999999999999999999888888999999999999872 5688888899999999999999999984 24
Q ss_pred CCCCCCccCCCcCCCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcCCCCCCCCCccceeeeee
Q 019166 245 PPPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLSLVVR 324 (345)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~~~~~rr~~ly~~~~~ 324 (345)
|+ +++ +|.++..+.|--.|+|.|.+..|++...-.+++..++++++++|++.+++.+..|.+... -|-|.|..+..
T Consensus 297 pn--eft-sgdgkpah~dfghfygssy~aapd~srtp~lsr~rdgllia~ldlnlcrq~kd~wgfrmt-~ryemya~~la 372 (387)
T KOG0808|consen 297 PN--EFT-SGDGKPAHNDFGHFYGSSYFAAPDASRTPSLSRYRDGLLIADLDLNLCRQYKDKWGFRMT-ARYEMYADLLA 372 (387)
T ss_pred CC--ccc-CCCCCcccccccccccceeeecCCCCCCccccccccceEEeecchHHHHHhhhhhcceeh-hhHHHHHHHHH
Confidence 43 232 455666677778999999999999999988899999999999999999999888766543 35577765544
Q ss_pred cC
Q 019166 325 DH 326 (345)
Q Consensus 325 ~~ 326 (345)
+-
T Consensus 373 e~ 374 (387)
T KOG0808|consen 373 EY 374 (387)
T ss_pred HH
Confidence 43
No 45
>PRK12291 apolipoprotein N-acyltransferase; Reviewed
Probab=99.96 E-value=7.6e-28 Score=235.13 Aligned_cols=178 Identities=15% Similarity=0.159 Sum_probs=145.2
Q ss_pred eEEEEEeccCCCCC------hHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhc
Q 019166 25 VRATVVQASTIFYD------TPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHAS 98 (345)
Q Consensus 25 ~rIa~vQ~~~~~~d------~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (345)
.+|++||.++.+.. ...+++++.+++++|.+.++|+|||||.+++.+..
T Consensus 195 ~~V~lVQ~ni~q~~Kw~~~~~~~~l~~~~~l~~~a~~~~~dLVVwPEta~p~~~~------------------------- 249 (418)
T PRK12291 195 VNIELVNTNIPQDLKWDKENLKSIINENLKEIDKAIDEKKDLIVLPETAFPLALN------------------------- 249 (418)
T ss_pred CEEEEEeCCCCcccccChhhHHHHHHHHHHHHHHHhccCCCEEEeCCcccccchh-------------------------
Confidence 49999999987532 36789999999999988899999999998876540
Q ss_pred ccCCCCHHHHHHHHHHHhcCeEEEEeeEEeeCCeeEEEEEEECCCCceEeeeecCCCCc-cc------------------
Q 019166 99 AIDVPGPEVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTA-LE------------------ 159 (345)
Q Consensus 99 a~~~~~~~l~~l~~~a~~~~i~iv~G~~~~~~~~~yNt~~vi~p~G~ii~~y~K~~l~~-~E------------------ 159 (345)
...+.++.+++.+ .++.+++|....+++++||++++++ +|+ +..|+|+||.+ +|
T Consensus 250 ---~~~~~~~~l~~~~--~~~~ii~G~~~~~~~~~yNS~~vi~-~G~-~~~Y~K~hLVPFGEyiP~~~~l~~~~~~~~~~ 322 (418)
T PRK12291 250 ---NSPILLDKLKELS--HKITIITGALRVEDGHIYNSTYIFS-KGN-VQIADKVILVPFGEEIPLPKFFKKPINKLFFG 322 (418)
T ss_pred ---hCHHHHHHHHHhc--cCCcEEEeeeeccCCceEEEEEEEC-CCC-cceecccCCCCCcccCccHHHHHhhhHHHhcc
Confidence 0123566677764 5799999998776678999999998 487 78999999854 23
Q ss_pred -cceeccCCCCCCCeEEcCCCcEEEEeecCCCchHHHHHHHHCCCeEEEEcCCCC-------hhhHhhhhhheeeecCeE
Q 019166 160 -RIIWGFGDGSTIPVFETPIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADS-------REVWQASMTHIALEGGCF 231 (345)
Q Consensus 160 -~~~f~~~~G~~~~vf~~~~~rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~-------~~~~~~~~~~rA~en~~~ 231 (345)
...|. +|+...++++++.|+|++||||.+|||+.| +|+|+++++||+. ..+|+.++++||+|||++
T Consensus 323 ~~~~f~--~G~~~~~~~~~g~~ig~lICYE~~Fpel~r----~ga~~Lv~iSNdaWfg~s~~p~~~~~~~r~RAiE~g~p 396 (418)
T PRK12291 323 GASDFS--KASKFSDFTLDGVKFRNAICYEATSEELYE----GNPKIVIAISNNAWFVPSIEPTLQKLLLKYYARKYGKT 396 (418)
T ss_pred CcccCC--CCCCCcceeeCCeEEEEEEeeeecchHhhc----cCCCEEEEecccccCCCChhHHHHHHHHHHHHHHhCCc
Confidence 22333 667788999999999999999999999987 7999999999863 346777888999999999
Q ss_pred EEEeCcccc
Q 019166 232 VLSANQFCR 240 (345)
Q Consensus 232 vv~~n~~G~ 240 (345)
++++.+.|.
T Consensus 397 vvratNtGi 405 (418)
T PRK12291 397 IYHSANGSP 405 (418)
T ss_pred EEEEcCCce
Confidence 999999988
No 46
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=3.8e-25 Score=220.32 Aligned_cols=223 Identities=24% Similarity=0.214 Sum_probs=168.1
Q ss_pred CCCcceEEEEEeccCCCC---ChH---HHHHHHHHHHHHHH--hCCCcEEEccCcCCCCCCCCCCcccccccCCccchHH
Q 019166 20 SSAPTVRATVVQASTIFY---DTP---ATLGKAERLLAEAA--GYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEE 91 (345)
Q Consensus 20 ~~~~~~rIa~vQ~~~~~~---d~~---~n~~~i~~~i~~A~--~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~ 91 (345)
...+.++|+++|.++.+. |.+ .++..+......+. .+++|+||+||.+++-...
T Consensus 223 ~~~~~~~V~lvQ~nI~q~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~dlVIwPEtA~p~~~~------------------ 284 (518)
T COG0815 223 VGEPTLTVALVQGNIPQDLKWDADALARLIAGYLEEEFLAAVDKQKPDLVVWPETALPFDLT------------------ 284 (518)
T ss_pred CCCCceEEEEecCCCcccccCCHHHHHHHHHhhhhccccccccCCCCCEEEccccccccchh------------------
Confidence 344569999999998632 222 22222222333333 3789999999999873220
Q ss_pred HHHHHhcccCCCCHHHHHHHHHHHhcCeEEEEeeEEe--eCC--eeEEEEEEECCCCceEeeeecCCCCc-cccce----
Q 019166 92 FRKYHASAIDVPGPEVERLAAMAGKYKVYLVMGVIER--DGY--TLYCTVLFFDSQGHFLGKHRKIMPTA-LERII---- 162 (345)
Q Consensus 92 ~~~~~~~a~~~~~~~l~~l~~~a~~~~i~iv~G~~~~--~~~--~~yNt~~vi~p~G~ii~~y~K~~l~~-~E~~~---- 162 (345)
+. ......+.+..++.++.+++|.... .++ .+||++++++++|+++.+|+|.||.+ +|.--
T Consensus 285 ---------~~-~~~~~~~~~~~~~~~~~~iiG~~~~~~~~~~~~yyNSv~~~~~~~~~~~~ydK~~LVPFGEYiP~~~~ 354 (518)
T COG0815 285 ---------RH-PDALARLAEALQRVGAPLLIGTDVDGPAPGGGIYYNSVLVLDPGGEGVYRYDKVHLVPFGEYIPFPEL 354 (518)
T ss_pred ---------hc-chHHHHHHHHHHhcCCcEEEeccccccCCCCcceeeEEEEecCCCCccccccceeeeCCccccchHHH
Confidence 11 1225678888889999999994332 233 48999999999999999999998754 23211
Q ss_pred ------------eccCCCCCCCeEEcCCC-cEEEEeecCCCchHHHHHHHHCCCeEEEEcCCCC-------hhhHhhhhh
Q 019166 163 ------------WGFGDGSTIPVFETPIG-KIGAAICWENRMPLLRTAMYAKGIEIYCAPTADS-------REVWQASMT 222 (345)
Q Consensus 163 ------------f~~~~G~~~~vf~~~~~-rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~-------~~~~~~~~~ 222 (345)
....+|+...++.++++ |++++||||.-||+..|....+|||+++++||+. ..++..+.+
T Consensus 355 l~~~~~~~~~~~~~f~~G~~~~v~~~~~~~~~~~~ICYE~~F~~~~r~~~~qga~~Lin~SNDAWf~~s~~p~QH~~~a~ 434 (518)
T COG0815 355 LRPLYFFLNLPMSDFSRGPGPQVLLLAGGPKIAPLICYEAIFPELVRASARQGAELLLNLSNDAWFGGSWGPYQHFQQAR 434 (518)
T ss_pred HHHHhhhhccccccccCCCCCcceecCCCceeeceeeehhhchHHHHHhhcCCCcEEEEcccccccCCCcchHHHHHHHH
Confidence 11224667778888775 6999999999999999999999999999999973 334555678
Q ss_pred heeeecCeEEEEeCcccccCCCCCCCCCccCCCcCCCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhH
Q 019166 223 HIALEGGCFVLSANQFCRRKDYPPPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGE 299 (345)
Q Consensus 223 ~rA~en~~~vv~~n~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~ 299 (345)
+||+|++.+++++++.|. |+++||+|++++..+.+..+++..++.+..
T Consensus 435 ~RAiE~grp~iRAtNtGi-----------------------------SavIdp~Gri~~~l~~~~~~~l~~~v~~~~ 482 (518)
T COG0815 435 VRAVELGRPLVRATNTGI-----------------------------SAVIDPRGRILAQLPYFTRGVLDATVPLKT 482 (518)
T ss_pred HHHHhcCCcEEEEcCCcc-----------------------------eEEECCCCCEEeecCCCCcceeeeeecccC
Confidence 999999999999999998 999999999999999999999999886643
No 47
>PRK13825 conjugal transfer protein TraB; Provisional
Probab=99.88 E-value=4.1e-22 Score=192.37 Aligned_cols=178 Identities=17% Similarity=0.077 Sum_probs=134.2
Q ss_pred eEEEEEeccCCCCC----hHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhccc
Q 019166 25 VRATVVQASTIFYD----TPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAI 100 (345)
Q Consensus 25 ~rIa~vQ~~~~~~d----~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 100 (345)
.++-.++++..+.. --...+++.+.+++|.++++|+|||||.++++|.. ..
T Consensus 186 ~~w~~v~t~~~~~~~~~~~~~~~~~~~~~v~~A~~~g~dlIVlPEta~~~~~~-------------~~------------ 240 (388)
T PRK13825 186 AGWVGVDTQLGRSLGRDASLERRRELIATVRAAAAAGARVVVLPESALGFWTP-------------TT------------ 240 (388)
T ss_pred CCeEEEECCcccccCchhhHHHHHHHHHHHHhhcccCCCEEEccCcccccccc-------------cc------------
Confidence 47778888765321 12445566777888888899999999999998761 00
Q ss_pred CCCCHHHHHHHHHHHhcCeEEEEeeEEeeCCeeEEEEEEECCCCceEeeeecCCCCcc-----------ccceeccCCCC
Q 019166 101 DVPGPEVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTAL-----------ERIIWGFGDGS 169 (345)
Q Consensus 101 ~~~~~~l~~l~~~a~~~~i~iv~G~~~~~~~~~yNt~~vi~p~G~ii~~y~K~~l~~~-----------E~~~f~~~~G~ 169 (345)
-+...+.++++++.|++|..+++++++||++++++++|. ...|+|+||.+. |..++..+. .
T Consensus 241 ------~~~~~~~l~~~~i~II~G~~~~~~~~~yNsa~v~~~~G~-~~~Y~K~~LvPfgE~~P~~~~~~e~~~~~~g~-~ 312 (388)
T PRK13825 241 ------ERLWRESLRGSDVTVIAGAAVVDPGGYDNVLVAISAGGG-RILYRERMPVPVSMWQPWRPWTGQGGGARAHF-F 312 (388)
T ss_pred ------cHHHHHHHHhCCCeEEEEeeecCCCCceEEEEEEeCCCC-eeeEeeeeCcCccccCchHHhhccccCCCCCC-C
Confidence 012345568899999999988878889999999999886 459999887542 344444321 1
Q ss_pred CCCeEEcCCCcEEEEeecCCCc--hHHHHHHHHCCCeEEEEcCCCC-------hhhHhhhhhheeeecCeEEEEeCc
Q 019166 170 TIPVFETPIGKIGAAICWENRM--PLLRTAMYAKGIEIYCAPTADS-------REVWQASMTHIALEGGCFVLSANQ 237 (345)
Q Consensus 170 ~~~vf~~~~~rigv~IC~D~~f--pe~~r~~~~~ga~li~~ps~~~-------~~~~~~~~~~rA~en~~~vv~~n~ 237 (345)
..++|++++.|+|++||||..| |++.+. .+|+|+|++|+|+. ..+...+.++||+|+|.+++++.+
T Consensus 313 ~~~vf~l~g~rvg~lICYE~~F~~pel~~~--~~GadlLv~~SNd~Wf~~s~~p~~q~~~~~~rA~e~g~plvrA~N 387 (388)
T PRK13825 313 ANPVVEIDGRRAAPLICYEQLLVWPVLQSM--LHSPDVIVAVGNGWWTKGTSIVAIQRASAEAWARLFGVPLVRAFN 387 (388)
T ss_pred CCCceeeCCeEEEEEEeeeecCcHHHHHhh--ccCCCEEEEecCchhcCCCcHHHHHHHHHHHHHHHhCCCEEEecC
Confidence 2358999999999999999988 666443 78999999999862 345667789999999999999976
No 48
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=99.72 E-value=1.8e-17 Score=157.69 Aligned_cols=243 Identities=21% Similarity=0.185 Sum_probs=184.4
Q ss_pred cceEEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCC
Q 019166 23 PTVRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDV 102 (345)
Q Consensus 23 ~~~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 102 (345)
..++||..+++..-.|++.|.++|.+-|++|++.||.+=+=||+-++||.+++-|. +...+.+
T Consensus 3 r~vtvAtc~lNqWAlDFegN~~rI~~Si~eAk~~gA~~RlGPELEi~GYgC~DHf~------------E~Dt~~H----- 65 (706)
T KOG2303|consen 3 RKVTVATCTLNQWALDFEGNMQRILKSIEEAKARGARYRLGPELEITGYGCEDHFL------------ESDTLLH----- 65 (706)
T ss_pred ceEEEEEechhhhhhhccccHHHHHHHHHHHHhcCCeeecCCceeecCCChHHhhc------------cchHHHH-----
Confidence 46899999999887899999999999999999999999999999999999543221 1111111
Q ss_pred CCHHHHHHHHHHH---hcCeEEEEeeEEeeCCeeEEEEEEECCCCceEeeeecCCCC----ccccceeccCCCC------
Q 019166 103 PGPEVERLAAMAG---KYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPT----ALERIIWGFGDGS------ 169 (345)
Q Consensus 103 ~~~~l~~l~~~a~---~~~i~iv~G~~~~~~~~~yNt~~vi~p~G~ii~~y~K~~l~----~~E~~~f~~~~G~------ 169 (345)
..+.+.++.. -.++.+.+|.+....+..||+.+++- +|+|+....|+.+. +.|.+||.+..-.
T Consensus 66 ---swE~l~~l~~~~~~~~il~diGmPv~hr~~ryNCrv~~~-n~kil~IRpKm~lanDgnyRE~RwFt~W~~~~~~e~y 141 (706)
T KOG2303|consen 66 ---SWEMLAELVESPVTQDILCDIGMPVMHRNVRYNCRVLFL-NRKILLIRPKMWLANDGNYRESRWFTPWTRPRVTEEY 141 (706)
T ss_pred ---HHHHHHHHHcCCCCCCeeEecCCchhhhhhhhccceeec-CCeEEEEcccceeccCCCchhhcccccccccccccee
Confidence 2334444443 35899999999988999999999998 99999999999764 4688887643110
Q ss_pred ------------C-----CCeEEcCCCcEEEEeecCCCchHH-HHHHHHCCCeEEEEcCCCC-----hhhHhhhhhheee
Q 019166 170 ------------T-----IPVFETPIGKIGAAICWENRMPLL-RTAMYAKGIEIYCAPTADS-----REVWQASMTHIAL 226 (345)
Q Consensus 170 ------------~-----~~vf~~~~~rigv~IC~D~~fpe~-~r~~~~~ga~li~~ps~~~-----~~~~~~~~~~rA~ 226 (345)
+ -.++++-..-||.-||.|+|.|.. --.+++.|++|+++.+.+- .+....+......
T Consensus 142 ~lP~~i~~~~~Q~tVPfGdavl~~~dt~ig~EiCEEL~tp~sphi~mal~GVei~~NaSGShh~LrK~~~r~~li~~at~ 221 (706)
T KOG2303|consen 142 QLPRMIQKHTGQETVPFGDAVLQTWDTCIGSEICEELWTPRSPHIDMALDGVEIITNASGSHHELRKLNTRVDLILNATS 221 (706)
T ss_pred eccHHHHHHhCCeeecccceeeeecccchhHHHHHHHcCCCCcchhhhhCceEEEecCCccHHHHhhhhhhhHHHhcchh
Confidence 0 024555555799999999998863 4557899999999998863 2233344455555
Q ss_pred ecCeEEEEeCcccccCCCCCCCCCccCCCcCCCCCCCccccceeEEECCCCcccccCC---CCCceEEEEEechhHHHHh
Q 019166 227 EGGCFVLSANQFCRRKDYPPPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPN---YDGEALISADLDLGEIARA 303 (345)
Q Consensus 227 en~~~vv~~n~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~---~~~e~~l~~~idl~~~~~~ 303 (345)
..|-..+++|+-|.+ ++...|+|.|+|.- +|+++++.. ..+-.++.+.+|+++++.+
T Consensus 222 k~GGvYlyaNqrGCD-------------------G~RlYydGca~Ia~-NG~vlAqg~QFsl~DveVv~atvDle~vrsy 281 (706)
T KOG2303|consen 222 KCGGVYLYANQRGCD-------------------GDRLYYDGCAMIAM-NGSVLAQGSQFSLDDVEVVTATVDLEDVRSY 281 (706)
T ss_pred hcceEEEeeccCCCC-------------------CceeEecchhheee-cceeeeecccccccceEEEEEEecHHHHHHH
Confidence 566667799999982 56667777777764 999999884 5667899999999999999
Q ss_pred hhc
Q 019166 304 KFD 306 (345)
Q Consensus 304 r~~ 306 (345)
|..
T Consensus 282 R~~ 284 (706)
T KOG2303|consen 282 RAS 284 (706)
T ss_pred Hhh
Confidence 854
No 49
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=82.93 E-value=8.6 Score=35.89 Aligned_cols=70 Identities=14% Similarity=0.134 Sum_probs=43.5
Q ss_pred HHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCHHHHHHHHHHHhcCeEEEEeeE--
Q 019166 49 LLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYKVYLVMGVI-- 126 (345)
Q Consensus 49 ~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~l~~~a~~~~i~iv~G~~-- 126 (345)
+.+..+.+|||+|+.|-.+..... ..+...++..|.+++++++.-..
T Consensus 161 ~~r~la~~GAdill~ps~~~~~~~-------------------------------~~w~~~~~aRA~En~~~vv~aN~~G 209 (291)
T cd07565 161 IARECAYKGAELIIRIQGYMYPAK-------------------------------DQWIITNKANAWCNLMYTASVNLAG 209 (291)
T ss_pred HHHHHHHCCCeEEEECCcCCCCcc-------------------------------hHHHHHHHHHHHhcCcEEEEecccc
Confidence 344445689999999875432100 11234456778889999885432
Q ss_pred EeeCCeeEEEEEEECCCCceEee
Q 019166 127 ERDGYTLYCTVLFFDSQGHFLGK 149 (345)
Q Consensus 127 ~~~~~~~yNt~~vi~p~G~ii~~ 149 (345)
...+..++=.+.+++|+|+++..
T Consensus 210 ~~~~~~~~G~S~ivdP~G~ila~ 232 (291)
T cd07565 210 FDGVFSYFGESMIVNFDGRTLGE 232 (291)
T ss_pred cCCCceeeeeeEEECCCCCEEEe
Confidence 11223556678899999997643
No 50
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=77.63 E-value=15 Score=33.05 Aligned_cols=41 Identities=15% Similarity=0.154 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCeEEEEeeE-Eee-CCeeEEEEEEECCCCceEe
Q 019166 108 ERLAAMAGKYKVYLVMGVI-ERD-GYTLYCTVLFFDSQGHFLG 148 (345)
Q Consensus 108 ~~l~~~a~~~~i~iv~G~~-~~~-~~~~yNt~~vi~p~G~ii~ 148 (345)
..++..|.+++++++.-.. -.+ +..++=.+.+++|+|+++.
T Consensus 178 ~~~~~rA~en~~~vv~an~~G~~~~~~~~G~S~i~~p~G~il~ 220 (254)
T cd07576 178 TLVPARAFENQIFVAYANRCGAEDGLTYVGLSSIAGPDGTVLA 220 (254)
T ss_pred hhhHHHHHhCCCEEEEEcccCCCCCceeeeeeEEECCCCCEeE
Confidence 3455667788999876532 112 2234456678899999764
No 51
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=71.44 E-value=24 Score=31.87 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=24.4
Q ss_pred HHHHHHhcCeEEEEee-EEeeCCeeE-EEEEEECCCCceEe
Q 019166 110 LAAMAGKYKVYLVMGV-IERDGYTLY-CTVLFFDSQGHFLG 148 (345)
Q Consensus 110 l~~~a~~~~i~iv~G~-~~~~~~~~y-Nt~~vi~p~G~ii~ 148 (345)
.+..|.+++++++.-. .-.+++..| =.+.+++|+|+++.
T Consensus 184 ~~~rA~En~~~vv~~n~~g~~~~~~~~G~S~ii~p~G~il~ 224 (258)
T cd07584 184 LPARALENTVFVAAVNRVGNEGDLVLFGKSKILNPRGQVLA 224 (258)
T ss_pred HHHHHHhCCcEEEEECccccCCCceecceeEEECCCCceee
Confidence 4456778999998522 112223333 46778999999764
No 52
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=71.27 E-value=27 Score=33.55 Aligned_cols=42 Identities=24% Similarity=0.331 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCeEEEEeeEE-eeC-CeeEEEEEEECCCCceEee
Q 019166 108 ERLAAMAGKYKVYLVMGVIE-RDG-YTLYCTVLFFDSQGHFLGK 149 (345)
Q Consensus 108 ~~l~~~a~~~~i~iv~G~~~-~~~-~~~yNt~~vi~p~G~ii~~ 149 (345)
..++..|.+++++++.-... .++ ..++=.+.+++|+|+++..
T Consensus 202 ~~~rarA~eN~~yVv~aN~~G~~~~~~~~G~S~Ivdp~G~vla~ 245 (345)
T PRK13286 202 LVAKAMAWANNCYVAVANAAGFDGVYSYFGHSAIIGFDGRTLGE 245 (345)
T ss_pred HHHHHHHHHCCCEEEEEecccccCCceeeeeEEEECCCCcEEEe
Confidence 34566788899998775332 222 2455678899999998754
No 53
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=70.71 E-value=24 Score=31.92 Aligned_cols=41 Identities=24% Similarity=0.257 Sum_probs=25.8
Q ss_pred HHHHHHHhcCeEEEEeeE-Eee-CCeeEEEEEEECCCCceEee
Q 019166 109 RLAAMAGKYKVYLVMGVI-ERD-GYTLYCTVLFFDSQGHFLGK 149 (345)
Q Consensus 109 ~l~~~a~~~~i~iv~G~~-~~~-~~~~yNt~~vi~p~G~ii~~ 149 (345)
.++..|.+++++++.... -.. +....=.+.+++|+|+++..
T Consensus 181 ~~~~rA~e~~~~vv~~n~~g~~~~~~~~G~S~i~~p~G~v~~~ 223 (261)
T cd07585 181 WLPARAYDNGVFVAACNGVGRDGGEVFPGGAMILDPYGRVLAE 223 (261)
T ss_pred HhHHHHhhcCeEEEEecccccCCCceecceEEEECCCCCEEec
Confidence 355667788999886422 112 22234567888999997654
No 54
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=69.51 E-value=46 Score=30.24 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=25.2
Q ss_pred HHHHHHhcCeEEEEe-eEEeeCC-eeEEEEEEECCCCceEe
Q 019166 110 LAAMAGKYKVYLVMG-VIERDGY-TLYCTVLFFDSQGHFLG 148 (345)
Q Consensus 110 l~~~a~~~~i~iv~G-~~~~~~~-~~yNt~~vi~p~G~ii~ 148 (345)
.+..|.+++++++.- ..-.+++ ..+=.+.+++|+|+++.
T Consensus 188 ~~arA~en~~~vv~~n~~G~~~~~~~~G~S~ii~p~G~~~~ 228 (268)
T cd07580 188 AMAAAHSNGLFIACADRVGTERGQPFIGQSLIVGPDGWPLA 228 (268)
T ss_pred hHHHHhhCCcEEEEEeeeeeccCceEeeeeEEECCCCCeee
Confidence 345577889998763 3322333 34456789999999753
No 55
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=68.43 E-value=27 Score=31.73 Aligned_cols=43 Identities=21% Similarity=0.228 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCeEEEEeeEE--eeCCeeEEEEEEECCCCceEee
Q 019166 107 VERLAAMAGKYKVYLVMGVIE--RDGYTLYCTVLFFDSQGHFLGK 149 (345)
Q Consensus 107 l~~l~~~a~~~~i~iv~G~~~--~~~~~~yNt~~vi~p~G~ii~~ 149 (345)
...++..|.+++++++.-... ..+..++-.+.+++|+|+++..
T Consensus 185 ~~~~~~rA~e~~~~vv~an~~G~~~~~~~~G~S~ii~p~G~il~~ 229 (269)
T cd07586 185 ETLLKFYAMMNGVYVVFANRVGVEDGVYFWGGSRVVDPDGEVVAE 229 (269)
T ss_pred HHHHHHHHHHhCCeEEEEeeecCcCCceEeCCcEEECCCCCEEEe
Confidence 345667788999998776432 2233455567889999998743
No 56
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=65.41 E-value=25 Score=31.60 Aligned_cols=40 Identities=20% Similarity=0.251 Sum_probs=24.7
Q ss_pred HHHHHHhcCeEEEEee-EEe-eCCeeEEEEEEECCCCceEee
Q 019166 110 LAAMAGKYKVYLVMGV-IER-DGYTLYCTVLFFDSQGHFLGK 149 (345)
Q Consensus 110 l~~~a~~~~i~iv~G~-~~~-~~~~~yNt~~vi~p~G~ii~~ 149 (345)
++..|.+++++++.-. .-. .+..++=.+.+++|+|+++..
T Consensus 181 ~~~rA~en~~~vv~~n~~G~~~~~~~~G~S~ii~p~G~il~~ 222 (253)
T cd07583 181 LRARAIENQAFVVACNRVGTDGGNEFGGHSMVIDPWGEVLAE 222 (253)
T ss_pred HHHHHHHhCCEEEEEcCcccCCCceecceeEEECCCchhhee
Confidence 3556778888887532 211 223445566788999987643
No 57
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=65.38 E-value=20 Score=32.40 Aligned_cols=38 Identities=24% Similarity=0.269 Sum_probs=24.0
Q ss_pred HHHHHHhcCeEEEEeeE-Eee-CCe-eEEEEEEECCCCceE
Q 019166 110 LAAMAGKYKVYLVMGVI-ERD-GYT-LYCTVLFFDSQGHFL 147 (345)
Q Consensus 110 l~~~a~~~~i~iv~G~~-~~~-~~~-~yNt~~vi~p~G~ii 147 (345)
.+..|.+++++++.... -.+ ++. .+=.+.+++|+|+++
T Consensus 192 ~~~rA~e~~~~vv~~n~~G~~~~~~~~~G~S~i~~p~G~il 232 (265)
T cd07572 192 LRARAIENQCYVVAAAQAGDHEAGRETYGHSMIVDPWGEVL 232 (265)
T ss_pred HHHHHHhcCCEEEEEcccccCCCCCeecceeEEECCCcHHH
Confidence 45567788998887643 112 222 333578899999865
No 58
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=64.65 E-value=39 Score=30.80 Aligned_cols=63 Identities=13% Similarity=0.191 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCHHHHHHHHHHHhcC
Q 019166 39 TPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYK 118 (345)
Q Consensus 39 ~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~l~~~a~~~~ 118 (345)
.+..++.+.+.++.|+.-|++.|+++-.. .++. ......++... +.++.+.+.|+++|
T Consensus 85 r~~~~~~~~~~i~~a~~lGa~~i~~~~~~-~~~~-------------~~~~~~~~~~~--------~~l~~l~~~a~~~g 142 (275)
T PRK09856 85 RRESLDMIKLAMDMAKEMNAGYTLISAAH-AGYL-------------TPPNVIWGRLA--------ENLSELCEYAENIG 142 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEcCCC-CCCC-------------CCHHHHHHHHH--------HHHHHHHHHHHHcC
Confidence 45778999999999999999998885432 2222 11111122221 36888999999999
Q ss_pred eEEEE
Q 019166 119 VYLVM 123 (345)
Q Consensus 119 i~iv~ 123 (345)
+.+.+
T Consensus 143 v~l~i 147 (275)
T PRK09856 143 MDLIL 147 (275)
T ss_pred CEEEE
Confidence 87754
No 59
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=64.57 E-value=31 Score=30.75 Aligned_cols=67 Identities=24% Similarity=0.245 Sum_probs=43.2
Q ss_pred HHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCHHHHHHHHHHHhcCeEEEEeeE--Ee
Q 019166 51 AEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYKVYLVMGVI--ER 128 (345)
Q Consensus 51 ~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~l~~~a~~~~i~iv~G~~--~~ 128 (345)
+.+..+|+|+|+.|=.+.... .......++..|.+++++++.-.. ..
T Consensus 153 ~~~~~~g~dli~~ps~~~~~~-------------------------------~~~~~~~~~~~A~e~~~~vv~~n~~G~~ 201 (253)
T cd07197 153 RELALKGADIILVPAAWPTAR-------------------------------REHWELLLRARAIENGVYVVAANRVGEE 201 (253)
T ss_pred HHHHHCCCcEEEECCcCCCcc-------------------------------hHHHHHHHHHHHHHhCCeEEEecCCCCC
Confidence 334567999999997743210 012344567778899999887543 11
Q ss_pred eCCeeEEEEEEECCCCceEe
Q 019166 129 DGYTLYCTVLFFDSQGHFLG 148 (345)
Q Consensus 129 ~~~~~yNt~~vi~p~G~ii~ 148 (345)
++...+-.+.+++|+|+++.
T Consensus 202 ~~~~~~G~S~i~~p~G~~~~ 221 (253)
T cd07197 202 GGLEFAGGSMIVDPDGEVLA 221 (253)
T ss_pred CCccccceeEEECCCCceee
Confidence 23355667888999998764
No 60
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=64.16 E-value=22 Score=28.25 Aligned_cols=90 Identities=17% Similarity=0.162 Sum_probs=58.6
Q ss_pred EeeEEeeCCeeEEEEEEECCCCceEeeeecCC----------CCcccc-ceeccCCCCCCCeEEcCCCcEEEEeecCCCc
Q 019166 123 MGVIERDGYTLYCTVLFFDSQGHFLGKHRKIM----------PTALER-IIWGFGDGSTIPVFETPIGKIGAAICWENRM 191 (345)
Q Consensus 123 ~G~~~~~~~~~yNt~~vi~p~G~ii~~y~K~~----------l~~~E~-~~f~~~~G~~~~vf~~~~~rigv~IC~D~~f 191 (345)
+|++.. +|+-|+.=++|.|||++ .+..|-. +...|- .+|. . .+.++-.+-|-.|++--.|
T Consensus 9 FG~v~i-~Gk~f~~DIvi~~dG~v-~rr~K~lskrK~GTSHkl~~eEle~~le--e--~~E~ivvGTG~~G~l~l~~--- 79 (121)
T COG1504 9 FGSVTI-GGKDFEHDIVIRPDGKV-ERREKELSKRKYGTSHKLALEELEELLE--E--GPEVIVVGTGQSGMLELSE--- 79 (121)
T ss_pred eeeEEE-CCEeccccEEEecCCce-ehhhhhhhhhhcCcccccCHHHHHHHHh--c--CCcEEEEecCceeEEEeCH---
Confidence 555543 67899999999999984 4544431 112221 2232 2 2346666666777665444
Q ss_pred hHHHHHHHHCCCeEEEEcCCCChhhHhhhhh
Q 019166 192 PLLRTAMYAKGIEIYCAPTADSREVWQASMT 222 (345)
Q Consensus 192 pe~~r~~~~~ga~li~~ps~~~~~~~~~~~~ 222 (345)
+....+...|++++..|+......|..+-.
T Consensus 80 -ea~e~~r~k~~~vi~~pT~EAikr~nel~~ 109 (121)
T COG1504 80 -EAREFFRKKGCEVIELPTPEAIKRYNELRG 109 (121)
T ss_pred -HHHHHHHhcCCeEEEeCCHHHHHHHHHHhc
Confidence 667777789999999999887777765543
No 61
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=63.40 E-value=52 Score=29.98 Aligned_cols=42 Identities=17% Similarity=0.210 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCeEEEEeeE--Ee----eCCeeEEEEEEECCCCceEee
Q 019166 108 ERLAAMAGKYKVYLVMGVI--ER----DGYTLYCTVLFFDSQGHFLGK 149 (345)
Q Consensus 108 ~~l~~~a~~~~i~iv~G~~--~~----~~~~~yNt~~vi~p~G~ii~~ 149 (345)
..++..|.+++++++.-.. +. .+..++=.+.+++|+|+++..
T Consensus 193 ~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~G~S~i~~p~G~il~~ 240 (279)
T TIGR03381 193 RVMQGHAAANLVPVVAANRIGTEVGDGGEQTFYGSSFIADHTGELVAE 240 (279)
T ss_pred HHHHHHHHhCCCeEEEEecccccCCCCCcceEeeeEEEECCCCcEeec
Confidence 3445567788998876432 11 223456778899999997743
No 62
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=62.98 E-value=29 Score=32.62 Aligned_cols=42 Identities=12% Similarity=-0.010 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCeEEEEeeEEeeCCeeEEEEEEECCC-CceEeee
Q 019166 108 ERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQ-GHFLGKH 150 (345)
Q Consensus 108 ~~l~~~a~~~~i~iv~G~~~~~~~~~yNt~~vi~p~-G~ii~~y 150 (345)
..++..|.+++++++.-...-. ...+-.+.+++|+ |+++...
T Consensus 218 ~l~~arA~eN~~~vi~~N~~g~-~~~~G~S~iv~P~~G~v~a~~ 260 (299)
T cd07567 218 QIQQAWAYANGVNLLAANYNNP-SAGMTGSGIYAGRSGALVYHY 260 (299)
T ss_pred HHHHHHHHHcCceEEEecCCCC-cCccccceEEcCCCCcEEEEe
Confidence 3456778899999977543211 1234667899999 9988664
No 63
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=60.51 E-value=29 Score=31.33 Aligned_cols=42 Identities=12% Similarity=0.096 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCeEEEEeeEE-eeCC-eeEEEEEEECCCCceEee
Q 019166 108 ERLAAMAGKYKVYLVMGVIE-RDGY-TLYCTVLFFDSQGHFLGK 149 (345)
Q Consensus 108 ~~l~~~a~~~~i~iv~G~~~-~~~~-~~yNt~~vi~p~G~ii~~ 149 (345)
..++..|.+++++++.-... ..++ ...=.+.+++|+|+++..
T Consensus 184 ~~~~~rA~en~~~vv~~n~~g~~~~~~~~G~S~ii~p~G~vl~~ 227 (261)
T cd07570 184 ELVSSRSARTGLPYVYVNQVGGQDDLVFDGGSFIADNDGELLAE 227 (261)
T ss_pred HHHHHHHHHhCCcEEEEeCCCCCceEEEECceEEEcCCCCEEEe
Confidence 44677788999998775431 1222 233457889999998754
No 64
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=60.10 E-value=48 Score=29.94 Aligned_cols=40 Identities=10% Similarity=0.164 Sum_probs=24.9
Q ss_pred HHHHHHhcCeEEEEeeE-Ee-----eCCeeEEEEEEECCCCceEee
Q 019166 110 LAAMAGKYKVYLVMGVI-ER-----DGYTLYCTVLFFDSQGHFLGK 149 (345)
Q Consensus 110 l~~~a~~~~i~iv~G~~-~~-----~~~~~yNt~~vi~p~G~ii~~ 149 (345)
++..|.+++++++.-.. -. .+....-.+.+++|+|+++..
T Consensus 176 ~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~G~S~i~~p~G~i~~~ 221 (259)
T cd07577 176 MPIRALENRVFTITANRIGTEERGGETLRFIGKSQITSPKGEVLAR 221 (259)
T ss_pred hhHhhhhcCceEEEEecCcccCCCCCCceEeeeeEEECCCCCEEee
Confidence 35556788898876322 11 112344667899999997644
No 65
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=59.73 E-value=57 Score=29.99 Aligned_cols=39 Identities=18% Similarity=0.200 Sum_probs=24.3
Q ss_pred HHHHHhcCeEEEEeeE-Eee----CCeeEEEEEEECCCCceEee
Q 019166 111 AAMAGKYKVYLVMGVI-ERD----GYTLYCTVLFFDSQGHFLGK 149 (345)
Q Consensus 111 ~~~a~~~~i~iv~G~~-~~~----~~~~yNt~~vi~p~G~ii~~ 149 (345)
+..|.+++++++.-.. -.+ ...++-.+.+++|+|+++..
T Consensus 202 ~~rA~en~~~vv~~N~~G~~~~~~~~~~~G~S~ii~p~G~il~~ 245 (287)
T cd07568 202 PAAAVANGYFVGAINRVGTEAPWNIGEFYGSSYFVDPRGQFVAS 245 (287)
T ss_pred HHHHHHCCcEEEEeccccccCCCccceEeceeEEECCCceEEEe
Confidence 4456688888874211 111 12456677899999998744
No 66
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=58.24 E-value=58 Score=29.71 Aligned_cols=63 Identities=14% Similarity=0.167 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCHHHHHHHHHHHhcC
Q 019166 39 TPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYK 118 (345)
Q Consensus 39 ~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~l~~~a~~~~ 118 (345)
.+..++.+.+.++.|+.-|++.|++|-. ..+. .+........+. +.++.+.++|+++|
T Consensus 89 r~~~~~~~~~~i~~a~~lG~~~v~~~~~--~~~~------------~~~~~~~~~~~~--------~~l~~l~~~a~~~g 146 (284)
T PRK13210 89 RERALEIMKKAIRLAQDLGIRTIQLAGY--DVYY------------EEKSEETRQRFI--------EGLAWAVEQAAAAQ 146 (284)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEECCc--cccc------------ccccHHHHHHHH--------HHHHHHHHHHHHhC
Confidence 3567888999999999999999998621 1111 011111111111 35777888899999
Q ss_pred eEEEE
Q 019166 119 VYLVM 123 (345)
Q Consensus 119 i~iv~ 123 (345)
+.+.+
T Consensus 147 v~l~l 151 (284)
T PRK13210 147 VMLAV 151 (284)
T ss_pred CEEEE
Confidence 98874
No 67
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=56.67 E-value=62 Score=29.28 Aligned_cols=76 Identities=20% Similarity=0.266 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCHHHHHHHHHHHhcCeEEE
Q 019166 43 LGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYKVYLV 122 (345)
Q Consensus 43 ~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~l~~~a~~~~i~iv 122 (345)
++.+.+.+++++ +++|+||+==.| |..+ ...+.+..+.+.+.+.+.|..+|
T Consensus 170 ~~~i~~~i~~~r-~~~D~vIv~~Hw--G~e~--------------------------~~~p~~~q~~~a~~lidaGaDiI 220 (250)
T PF09587_consen 170 IERIKEDIREAR-KKADVVIVSLHW--GIEY--------------------------ENYPTPEQRELARALIDAGADII 220 (250)
T ss_pred HHHHHHHHHHHh-cCCCEEEEEecc--CCCC--------------------------CCCCCHHHHHHHHHHHHcCCCEE
Confidence 488899999987 689988774443 2221 02234455666666667899999
Q ss_pred EeeE--EeeCCeeEEEEEEECCCCceE
Q 019166 123 MGVI--ERDGYTLYCTVLFFDSQGHFL 147 (345)
Q Consensus 123 ~G~~--~~~~~~~yNt~~vi~p~G~ii 147 (345)
+|.- ...+-.+|+...++-.=|..+
T Consensus 221 iG~HpHv~q~~E~y~~~~I~YSLGNfi 247 (250)
T PF09587_consen 221 IGHHPHVIQPVEIYKGKPIFYSLGNFI 247 (250)
T ss_pred EeCCCCcccceEEECCEEEEEeCcccc
Confidence 9964 223334554444443355433
No 68
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=56.08 E-value=59 Score=29.35 Aligned_cols=37 Identities=14% Similarity=0.111 Sum_probs=23.8
Q ss_pred HHHHhcCeEEEEeeE--EeeCCeeEEEEEEECCCCceEe
Q 019166 112 AMAGKYKVYLVMGVI--ERDGYTLYCTVLFFDSQGHFLG 148 (345)
Q Consensus 112 ~~a~~~~i~iv~G~~--~~~~~~~yNt~~vi~p~G~ii~ 148 (345)
..|.+++++++.-.. ...+...+=.+.+++|+|+++.
T Consensus 184 ~rA~en~~~vv~an~~G~~~~~~~~G~S~ii~p~G~il~ 222 (258)
T cd07578 184 NRAFENGCYLIESNRWGLERGVQFSGGSCIIEPDGTIQA 222 (258)
T ss_pred HhhhcCCeEEEEecceeccCCcceeeEEEEECCCCcEee
Confidence 356678888777533 1122234556789999999764
No 69
>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional
Probab=54.61 E-value=37 Score=30.88 Aligned_cols=33 Identities=12% Similarity=0.175 Sum_probs=24.3
Q ss_pred CChHHHHHHHHHHHHHHHhCCCcEEEccCcCCC
Q 019166 37 YDTPATLGKAERLLAEAAGYGSQLVVFPEAFIG 69 (345)
Q Consensus 37 ~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~ 69 (345)
++.....+.+.+.++...+.|..+++|||..-+
T Consensus 119 ~~~~~~~~~l~~~~~~l~~~g~sv~IFPEGTRs 151 (245)
T PRK15018 119 NNRTKAHGTIAEVVNHFKKRRISIWMFPEGTRS 151 (245)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEECCccCC
Confidence 345566667777777777778899999998554
No 70
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=53.81 E-value=52 Score=31.82 Aligned_cols=39 Identities=15% Similarity=-0.056 Sum_probs=25.3
Q ss_pred HHHHHHHhcCeEEEEeeE---Ee---------------eCCeeEEEEEEECCCCceE
Q 019166 109 RLAAMAGKYKVYLVMGVI---ER---------------DGYTLYCTVLFFDSQGHFL 147 (345)
Q Consensus 109 ~l~~~a~~~~i~iv~G~~---~~---------------~~~~~yNt~~vi~p~G~ii 147 (345)
.++..|.+++++++.-.. +. +...+|-.+.+++|+|+++
T Consensus 263 ~~rarAieN~~fVv~~NrvG~e~~~~~~~~~~g~~~~~~~~~f~G~S~Ii~P~G~il 319 (363)
T cd07587 263 EARNAAIANSYFTVGINRVGTEVFPNEFTSGDGKPAHKDFGHFYGSSYVAAPDGSRT 319 (363)
T ss_pred HHHHHHHhcCcEEEEeccccccccccccccccccccccccccccceeEEECCCCCCc
Confidence 355667888999885321 11 0124567888999999864
No 71
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=52.65 E-value=92 Score=28.44 Aligned_cols=43 Identities=19% Similarity=0.118 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCeEEEEeeE--Eee----CCeeEEEEEEECCCCceEee
Q 019166 107 VERLAAMAGKYKVYLVMGVI--ERD----GYTLYCTVLFFDSQGHFLGK 149 (345)
Q Consensus 107 l~~l~~~a~~~~i~iv~G~~--~~~----~~~~yNt~~vi~p~G~ii~~ 149 (345)
...++..|.+++++++.-.. ... +...+=.+.+++|+|+++..
T Consensus 195 ~~~~~~rA~e~~~~vv~an~~G~~~~~~~~~~~~G~S~i~~p~G~i~~~ 243 (284)
T cd07573 195 QRVQRGHAIANGVPVAAVNRVGVEGDPGSGITFYGSSFIADPFGEILAQ 243 (284)
T ss_pred HHHHHHHHHHcCceEEEeccccccCCCCCCceeeceeEEECCCCCeeec
Confidence 34455668888998886432 111 23445567889999997643
No 72
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=52.48 E-value=86 Score=28.69 Aligned_cols=63 Identities=16% Similarity=0.234 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCHHHHHHHHHHHhcCe
Q 019166 40 PATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYKV 119 (345)
Q Consensus 40 ~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~l~~~a~~~~i 119 (345)
+..++.+.+.++.|+.-|++.|+++..... +. .........+. +.++.+.+.|+++|+
T Consensus 90 ~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~-~~-------------~~~~~~~~~~~--------~~l~~l~~~A~~~Gv 147 (279)
T TIGR00542 90 QQGLEIMEKAIQLARDLGIRTIQLAGYDVY-YE-------------EHDEETRRRFR--------EGLKEAVELAARAQV 147 (279)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEecCcccc-cC-------------cCCHHHHHHHH--------HHHHHHHHHHHHcCC
Confidence 466788899999999999999998642110 11 11111122221 357888999999999
Q ss_pred EEEEe
Q 019166 120 YLVMG 124 (345)
Q Consensus 120 ~iv~G 124 (345)
.+.+=
T Consensus 148 ~l~lE 152 (279)
T TIGR00542 148 TLAVE 152 (279)
T ss_pred EEEEe
Confidence 88763
No 73
>PLN02798 nitrilase
Probab=52.05 E-value=62 Score=29.87 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=25.5
Q ss_pred HHHHHHhcCeEEEEeeE--Ee-eCCeeEEEEEEECCCCceEee
Q 019166 110 LAAMAGKYKVYLVMGVI--ER-DGYTLYCTVLFFDSQGHFLGK 149 (345)
Q Consensus 110 l~~~a~~~~i~iv~G~~--~~-~~~~~yNt~~vi~p~G~ii~~ 149 (345)
++..|.+++++++.-.. +. ++...+=...+++|+|+++..
T Consensus 203 ~~~rAien~~~vv~an~~G~~~~~~~~~G~S~ii~p~G~il~~ 245 (286)
T PLN02798 203 LRARAIETQCYVIAAAQAGKHNEKRESYGHALIIDPWGTVVAR 245 (286)
T ss_pred HHHHHHHhCCEEEEecccCcCCCCceeeeeeEEECCCccchhh
Confidence 45567788888877322 11 123445667888999997643
No 74
>PLN02747 N-carbamolyputrescine amidase
Probab=51.17 E-value=1e+02 Score=28.46 Aligned_cols=76 Identities=14% Similarity=0.118 Sum_probs=43.3
Q ss_pred HHHHHHhCCCcEEEccCcCCCC-CCCCCCcccccccCCccchHHHHHHHhcccCCCCHHHHHHHHHHHhcCeEEEEeeE-
Q 019166 49 LLAEAAGYGSQLVVFPEAFIGG-YPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYKVYLVMGVI- 126 (345)
Q Consensus 49 ~i~~A~~~gadliVfPE~~l~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~l~~~a~~~~i~iv~G~~- 126 (345)
+.+..+.+|+|||+.|=.+.+. +. ... ... ..+...++..|.+++++++.-..
T Consensus 164 ~~r~~~~~Ga~lil~ps~~~~~~~~-------------~~~-~~~-----------~~~~~~~~~rA~en~~~vv~~N~~ 218 (296)
T PLN02747 164 AARAMVLQGAEVLLYPTAIGSEPQD-------------PGL-DSR-----------DHWKRVMQGHAGANLVPLVASNRI 218 (296)
T ss_pred HHHHHHHCCCCEEEEeCccCCCCcc-------------ccc-chH-----------HHHHHHHHHHHHHcCCeEEEEecc
Confidence 3455567899999998775321 11 000 000 11233456677788888876422
Q ss_pred -E-e----e---CCeeEEEEEEECCCCceEee
Q 019166 127 -E-R----D---GYTLYCTVLFFDSQGHFLGK 149 (345)
Q Consensus 127 -~-~----~---~~~~yNt~~vi~p~G~ii~~ 149 (345)
+ . . +..++=.+.+++|+|+++..
T Consensus 219 G~~~~~~~~g~~~~~~~G~S~i~~p~G~vl~~ 250 (296)
T PLN02747 219 GTEILETEHGPSKITFYGGSFIAGPTGEIVAE 250 (296)
T ss_pred cccccccccCCcCceEeeeeEEECCCCCEeec
Confidence 1 0 1 12345567888999998764
No 75
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=50.99 E-value=61 Score=27.67 Aligned_cols=45 Identities=13% Similarity=0.185 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCeEEEEeeEEeeC-C-e--eEEEEEEECCCCceEeeee
Q 019166 107 VERLAAMAGKYKVYLVMGVIERDG-Y-T--LYCTVLFFDSQGHFLGKHR 151 (345)
Q Consensus 107 l~~l~~~a~~~~i~iv~G~~~~~~-~-~--~yNt~~vi~p~G~ii~~y~ 151 (345)
.+.+.++++.+++...-......+ + . .-+..++|+|+|+++..|.
T Consensus 124 ~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 124 REEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp HHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEEC
T ss_pred HHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEc
Confidence 456788888888766544332221 1 1 2246789999999988774
No 76
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=50.77 E-value=96 Score=28.71 Aligned_cols=41 Identities=20% Similarity=0.156 Sum_probs=24.7
Q ss_pred HHHHHHHhcCeEEEEeeEE-eeC----CeeE-EEEEEECCCCceEee
Q 019166 109 RLAAMAGKYKVYLVMGVIE-RDG----YTLY-CTVLFFDSQGHFLGK 149 (345)
Q Consensus 109 ~l~~~a~~~~i~iv~G~~~-~~~----~~~y-Nt~~vi~p~G~ii~~ 149 (345)
.++..|.+++++++.-... .++ +..| -.+.+++|+|+++..
T Consensus 211 ~~~arA~en~~~vv~aN~~G~~~~~~~~~~~~G~S~ivdp~G~vla~ 257 (294)
T cd07582 211 ANRARALENLAYVVSANSGGIYGSPYPADSFGGGSMIVDYKGRVLAE 257 (294)
T ss_pred HHHHHHHhcCCEEEEecccccCcccccCceecceeEEECCCCCEEEe
Confidence 3456677889998853221 111 1233 467788999997643
No 77
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=50.52 E-value=19 Score=34.69 Aligned_cols=63 Identities=16% Similarity=0.185 Sum_probs=41.3
Q ss_pred EEeecCCCchHHHHHHHHCCCeEEEEcCCC-----------------------ChhhHhhhhh----heeeecCeEEEEe
Q 019166 183 AAICWENRMPLLRTAMYAKGIEIYCAPTAD-----------------------SREVWQASMT----HIALEGGCFVLSA 235 (345)
Q Consensus 183 v~IC~D~~fpe~~r~~~~~ga~li~~ps~~-----------------------~~~~~~~~~~----~rA~en~~~vv~~ 235 (345)
++|| |...|+..++++.+ +.+|++.... +..+|...++ -+|.|+|+|||.|
T Consensus 66 i~i~-D~~n~~Sl~emak~-~~vivN~vGPyR~hGE~VVkacienG~~~vDISGEP~f~E~mq~kYhd~A~ekGVYIVsa 143 (423)
T KOG2733|consen 66 ILIA-DSANEASLDEMAKQ-ARVIVNCVGPYRFHGEPVVKACIENGTHHVDISGEPQFMERMQLKYHDLAKEKGVYIVSA 143 (423)
T ss_pred EEEe-cCCCHHHHHHHHhh-hEEEEeccccceecCcHHHHHHHHcCCceeccCCCHHHHHHHHHHHHHHHHhcCeEEEee
Confidence 4555 66677777777764 8999985432 2356655554 4899999999987
Q ss_pred CcccccCCCCCCCCC
Q 019166 236 NQFCRRKDYPPPPEY 250 (345)
Q Consensus 236 n~~G~~~~~~~~~~~ 250 (345)
...-. +|.+..+
T Consensus 144 CGfDS---IPaDlGv 155 (423)
T KOG2733|consen 144 CGFDS---IPADLGV 155 (423)
T ss_pred cccCC---CCcccee
Confidence 64322 6655443
No 78
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=50.11 E-value=73 Score=28.54 Aligned_cols=40 Identities=23% Similarity=0.157 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCeEEEEeeEEeeCCeeEEEEEEECCCCceEee
Q 019166 108 ERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGK 149 (345)
Q Consensus 108 ~~l~~~a~~~~i~iv~G~~~~~~~~~yNt~~vi~p~G~ii~~ 149 (345)
...+..|.+++++++.-... +....=.+.+++|+|+++..
T Consensus 185 ~~~~~rA~en~~~vv~~n~~--g~~~~G~S~i~~p~G~i~~~ 224 (255)
T cd07581 185 TLLRARALENTVYVAAAGQA--GPRGIGRSMVVDPLGVVLAD 224 (255)
T ss_pred HHHHHHHHHhCCEEEEEcCc--CCCcccceEEECCCcceeee
Confidence 44566677888887764321 11233456888999987653
No 79
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=50.06 E-value=78 Score=28.86 Aligned_cols=66 Identities=21% Similarity=0.226 Sum_probs=44.3
Q ss_pred HhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCHHHHHHHHHHHhcCeEEEEeeEEe-e-C-
Q 019166 54 AGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYKVYLVMGVIER-D-G- 130 (345)
Q Consensus 54 ~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~l~~~a~~~~i~iv~G~~~~-~-~- 130 (345)
+..|+++|+.|-.+..... . ..+...++.-|.+++++++.....- + .
T Consensus 163 a~~Gaeii~~p~a~~~~~~-------------------~-----------~~w~~l~~arA~en~~~vv~~n~~g~~~~~ 212 (274)
T COG0388 163 ALGGAELLLVPAAWPAERG-------------------L-----------DHWEVLLRARAIENQVYVLAANRAGFDGAG 212 (274)
T ss_pred HhcCCeEEEEcCCCCCccc-------------------H-----------HHHHHHHHHHhhhcCceEEEecccCCCCCc
Confidence 4458999999988665321 0 0122336666778999998875422 2 2
Q ss_pred CeeEEEEEEECCCCceEee
Q 019166 131 YTLYCTVLFFDSQGHFLGK 149 (345)
Q Consensus 131 ~~~yNt~~vi~p~G~ii~~ 149 (345)
...+-.+++++|+|+++..
T Consensus 213 ~~~~G~S~i~~p~G~v~~~ 231 (274)
T COG0388 213 LEFCGHSAIIDPDGEVLAE 231 (274)
T ss_pred cEEecceEEECCCccEEee
Confidence 4688899999999986543
No 80
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=49.24 E-value=70 Score=30.49 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=49.0
Q ss_pred ChHHHHHHHHHHHHHHHhCCCcEEEccC----cCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCHHHHHHHHH
Q 019166 38 DTPATLGKAERLLAEAAGYGSQLVVFPE----AFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAM 113 (345)
Q Consensus 38 d~~~n~~~i~~~i~~A~~~gadliVfPE----~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~l~~~ 113 (345)
+..+.+++...+|+.|++.|||.|=|.= -.++.-.....|. ....++...+-..++.+ ..+-++...|.+.
T Consensus 24 NHnG~le~A~~lIdaAk~aGADavKfQt~~~~d~~t~~~~~~~~~----i~~~~~~~slyel~e~~-~~p~e~~~~Lke~ 98 (347)
T COG2089 24 NHNGDLERAKELIDAAKEAGADAVKFQTFYTPDIMTLESKNVPFK----IKTLWDKVSLYELYEEA-ETPLEWHAQLKEY 98 (347)
T ss_pred cccCcHHHHHHHHHHHHHcCcceeeeecccccccccccccCCccc----cccccccccHHHHHHHh-cCCHHHHHHHHHH
Confidence 4556699999999999999999997754 2333211111110 00012222222333433 3455778889999
Q ss_pred HHhcCeEEEEe
Q 019166 114 AGKYKVYLVMG 124 (345)
Q Consensus 114 a~~~~i~iv~G 124 (345)
|++.|+.++..
T Consensus 99 a~~~Gi~~~SS 109 (347)
T COG2089 99 ARKRGIIFFSS 109 (347)
T ss_pred HHHcCeEEEec
Confidence 99988877554
No 81
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=48.78 E-value=95 Score=28.37 Aligned_cols=63 Identities=16% Similarity=0.254 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCHHHHHHHHHHHhcC
Q 019166 39 TPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYK 118 (345)
Q Consensus 39 ~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~l~~~a~~~~ 118 (345)
.+..++.+++.++.|+.-|++.|+++ |+... .+ .........+. +.++.+.++|+++|
T Consensus 94 r~~~~~~~~~~i~~a~~lG~~~i~~~-----~~~~~------~~---~~~~~~~~~~~--------~~l~~l~~~A~~~G 151 (283)
T PRK13209 94 RAQALEIMRKAIQLAQDLGIRVIQLA-----GYDVY------YE---QANNETRRRFI--------DGLKESVELASRAS 151 (283)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEC-----Ccccc------cc---ccHHHHHHHHH--------HHHHHHHHHHHHhC
Confidence 35668889999999999999999985 22200 00 11111111111 35778888999999
Q ss_pred eEEEE
Q 019166 119 VYLVM 123 (345)
Q Consensus 119 i~iv~ 123 (345)
+.|.+
T Consensus 152 V~i~i 156 (283)
T PRK13209 152 VTLAF 156 (283)
T ss_pred CEEEE
Confidence 87765
No 82
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=48.49 E-value=88 Score=26.58 Aligned_cols=63 Identities=17% Similarity=0.304 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccch-HHHHHHHhcccCCCCHHHHHHHHHHHhcC
Q 019166 40 PATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGK-EEFRKYHASAIDVPGPEVERLAAMAGKYK 118 (345)
Q Consensus 40 ~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~l~~l~~~a~~~~ 118 (345)
+..++.+.+.++.|+..|++.++++=....... .... ..++.+. +.++.+.+.|+++|
T Consensus 67 ~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~-------------~~~~~~~~~~~~--------~~l~~l~~~a~~~g 125 (213)
T PF01261_consen 67 EEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGP-------------EDDTEENWERLA--------ENLRELAEIAEEYG 125 (213)
T ss_dssp HHHHHHHHHHHHHHHHHTBSEEEEECTTESSST-------------TSSHHHHHHHHH--------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCceeecCccccccc-------------CCCHHHHHHHHH--------HHHHHHHhhhhhhc
Confidence 344889999999999999999999832100000 1111 2222222 35788899999999
Q ss_pred eEEEE
Q 019166 119 VYLVM 123 (345)
Q Consensus 119 i~iv~ 123 (345)
+.+.+
T Consensus 126 v~i~l 130 (213)
T PF01261_consen 126 VRIAL 130 (213)
T ss_dssp SEEEE
T ss_pred ceEEE
Confidence 87765
No 83
>TIGR00530 AGP_acyltrn 1-acyl-sn-glycerol-3-phosphate acyltransferases. 1-acyl-sn-glycerol-3-phosphate acyltransferase is also called 1-AGP acyltransferase, lysophosphatidic acid acyltransferase, and LPA acyltransferase.
Probab=48.00 E-value=59 Score=25.46 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEccCcCCC
Q 019166 43 LGKAERLLAEAAGYGSQLVVFPEAFIG 69 (345)
Q Consensus 43 ~~~i~~~i~~A~~~gadliVfPE~~l~ 69 (345)
.....+.+.++.++|..+++|||....
T Consensus 75 ~~~~~~~~~~~l~~g~~v~ifPeG~~~ 101 (130)
T TIGR00530 75 IATALKAAIEVLKQGRSIGVFPEGTRS 101 (130)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 344445555566778899999998643
No 84
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=47.31 E-value=79 Score=25.26 Aligned_cols=43 Identities=16% Similarity=0.248 Sum_probs=32.3
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCC
Q 019166 24 TVRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIG 69 (345)
Q Consensus 24 ~~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~ 69 (345)
..+|+.+...- -+-...+...++|..+-.++++.|++|+-.++
T Consensus 5 ~~~v~~~~s~~---~~i~~~qdalDLi~~~~~~~~~~i~l~~~~l~ 47 (113)
T PF13788_consen 5 GIRVAEVSSDE---PLISDEQDALDLIGTAYEHGADRIILPKEALS 47 (113)
T ss_pred CeEEEEEeCCC---CeecchhHHHHHHHHHHHcCCCEEEEEhHHCC
Confidence 45777766542 23345677888888888899999999999887
No 85
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=47.30 E-value=73 Score=28.88 Aligned_cols=41 Identities=20% Similarity=0.168 Sum_probs=27.3
Q ss_pred HHHHHHHhcCeEEEEeeEE-ee--CCeeEEEEEEECCCCceEee
Q 019166 109 RLAAMAGKYKVYLVMGVIE-RD--GYTLYCTVLFFDSQGHFLGK 149 (345)
Q Consensus 109 ~l~~~a~~~~i~iv~G~~~-~~--~~~~yNt~~vi~p~G~ii~~ 149 (345)
.++..|.+++++++.-... .+ +..++=.+.+++|+|+++..
T Consensus 176 ~~~aRA~En~~~vv~~n~~G~~~~~~~~~G~S~ivdP~G~vl~~ 219 (256)
T PRK10438 176 LLTARAIENQAYVAGCNRVGSDGNGHHYRGDSRIINPQGEIIAT 219 (256)
T ss_pred HHHHHHHhcCcEEEEecccccCCCCCEEcCceEEECCCCcEEEE
Confidence 3456788999998775431 11 22345678899999997754
No 86
>PRK13981 NAD synthetase; Provisional
Probab=47.04 E-value=73 Score=32.54 Aligned_cols=42 Identities=12% Similarity=0.077 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCeEEEEeeE-EeeCC-eeEEEEEEECCCCceEee
Q 019166 108 ERLAAMAGKYKVYLVMGVI-ERDGY-TLYCTVLFFDSQGHFLGK 149 (345)
Q Consensus 108 ~~l~~~a~~~~i~iv~G~~-~~~~~-~~yNt~~vi~p~G~ii~~ 149 (345)
..++..|.+++++++.-.. -..++ .+.-.+.+++|+|+++..
T Consensus 183 ~~~~~rA~En~~~vv~aN~vG~~~~~~f~G~S~i~dp~G~il~~ 226 (540)
T PRK13981 183 AVLRARVRETGLPLVYLNQVGGQDELVFDGASFVLNADGELAAR 226 (540)
T ss_pred HHHHHHHHHhCCeEEEEecccCCCceEEeCceEEECCCCCEeee
Confidence 4577788899998877533 11222 333567888999987754
No 87
>PF01553 Acyltransferase: Acyltransferase; InterPro: IPR002123 This family contains acyltransferases involved in phospholipid biosynthesis and other proteins of unknown function []. This domain is found in tafazzins, defects in which are the cause of Barth syndrome; a severe inherited disorder which is often fatal in childhood and is characterised by cardiac and skeletal abnormalities. Phospholipid/glycerol acyltransferase is not found in the viruses or the archaea and is under represented in the bacteria. Bacterial glycerol-phosphate acyltransferases are involved in membrane biogenesis since they use fatty acid chains to form the first membrane phospholipids [].; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1IUQ_A 1K30_A.
Probab=44.15 E-value=47 Score=26.12 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEccCcCCC
Q 019166 43 LGKAERLLAEAAGYGSQLVVFPEAFIG 69 (345)
Q Consensus 43 ~~~i~~~i~~A~~~gadliVfPE~~l~ 69 (345)
.....+.+.+..++|--+++|||...+
T Consensus 77 ~~~~~~~~~~~l~~~~~i~ifPEG~~~ 103 (132)
T PF01553_consen 77 NRKALKDIKEILRKGGSIVIFPEGTRS 103 (132)
T ss_dssp HHHHHHHHHHHHHC---EEE-TT-S--
T ss_pred cchhHHHHHHHhhhcceeeecCCccCc
Confidence 333334444445555559999998443
No 88
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=43.54 E-value=63 Score=22.50 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhCCCcEEEccCcC
Q 019166 45 KAERLLAEAAGYGSQLVVFPEAF 67 (345)
Q Consensus 45 ~i~~~i~~A~~~gadliVfPE~~ 67 (345)
...++++.|+++|-+.+.+=+..
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCC
Confidence 46788999999999999998874
No 89
>PRK13287 amiF formamidase; Provisional
Probab=42.62 E-value=1.7e+02 Score=27.83 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=23.3
Q ss_pred HHHHHhcCeEEEEeeEE-eeC-CeeEEEEEEECCCCceEee
Q 019166 111 AAMAGKYKVYLVMGVIE-RDG-YTLYCTVLFFDSQGHFLGK 149 (345)
Q Consensus 111 ~~~a~~~~i~iv~G~~~-~~~-~~~yNt~~vi~p~G~ii~~ 149 (345)
+..|.+++++++.-... .++ -..+=.+.+++|+|+++..
T Consensus 204 ~arA~en~~~vv~an~~G~~~~~~~~G~S~Iidp~G~vl~~ 244 (333)
T PRK13287 204 RSNAWQNLMYTASVNLAGYDGVFYYFGEGQVCNFDGTTLVQ 244 (333)
T ss_pred HHHHHhCCcEEEEEeccccCCCeeeeeeeEEECCCCcEEEe
Confidence 33466778887664321 121 1344567889999997644
No 90
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=42.28 E-value=92 Score=28.90 Aligned_cols=41 Identities=7% Similarity=-0.079 Sum_probs=26.7
Q ss_pred HHHHHHHHhcCeEEEEeeEE-----------------eeCCeeEEEEEEECCCCceEe
Q 019166 108 ERLAAMAGKYKVYLVMGVIE-----------------RDGYTLYCTVLFFDSQGHFLG 148 (345)
Q Consensus 108 ~~l~~~a~~~~i~iv~G~~~-----------------~~~~~~yNt~~vi~p~G~ii~ 148 (345)
..++..|.+++++++.-... .+....+=.+.+++|+|+++.
T Consensus 196 ~~~~arAien~~~vv~~N~vG~~~~~~~~~~~~~~~~~~~~~~~G~S~iv~P~G~il~ 253 (297)
T cd07564 196 AASRHYALEGRCFVLSACQVVTEEDIPADCEDDEEADPLEVLGGGGSAIVGPDGEVLA 253 (297)
T ss_pred HHHHHHHHhcCCEEEEcccccChhHcccccccccccccccccCCCceEEECCCCCeec
Confidence 34566788999999873210 011234567889999999763
No 91
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=42.21 E-value=80 Score=29.12 Aligned_cols=39 Identities=13% Similarity=0.093 Sum_probs=25.0
Q ss_pred HHHHHHHhcCeEEEEeeEEeeCCeeEEEEEEECCCCceE
Q 019166 109 RLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFL 147 (345)
Q Consensus 109 ~l~~~a~~~~i~iv~G~~~~~~~~~yNt~~vi~p~G~ii 147 (345)
.++.-|.+++++++.-...-......-.+.+++|+|+++
T Consensus 192 ~~~aRA~EN~~~vv~aN~~g~~~~~~G~S~ii~P~G~v~ 230 (279)
T cd07579 192 LARVRAGENNVYFAFANVPDPARGYTGWSGVFGPDTFAF 230 (279)
T ss_pred HhHhHHhhCCeEEEEeeccCCccccccccEEECCCeEEc
Confidence 456678899999977643211122334467889999864
No 92
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=41.53 E-value=62 Score=30.92 Aligned_cols=83 Identities=12% Similarity=0.208 Sum_probs=50.6
Q ss_pred ChHHHHHHHHHHHHHHHhCCCcEEEccCc----CCCCCCCCCCcccccccCCc-cchHHHHHHHhcccCCCCHHHHHHHH
Q 019166 38 DTPATLGKAERLLAEAAGYGSQLVVFPEA----FIGGYPRGANFGVTIGNRTA-KGKEEFRKYHASAIDVPGPEVERLAA 112 (345)
Q Consensus 38 d~~~n~~~i~~~i~~A~~~gadliVfPE~----~l~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~l~~l~~ 112 (345)
+...+++..+++|+.|++.|||.|=|.=+ ..+.......|. ..+. .+...++.+.+ ...+.+.++.|.+
T Consensus 10 NH~Gdl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~l~~e~~~~L~~ 83 (329)
T TIGR03569 10 NHNGSLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQ----KINTGAEESQLEMLKK--LELSEEDHRELKE 83 (329)
T ss_pred CccCcHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCccccccccc----ccCCcCCCcHHHHHHH--hCCCHHHHHHHHH
Confidence 45678999999999999999999988532 111111000000 0000 11122332322 2356678999999
Q ss_pred HHHhcCeEEEEeeE
Q 019166 113 MAGKYKVYLVMGVI 126 (345)
Q Consensus 113 ~a~~~~i~iv~G~~ 126 (345)
.|+++|+.++..-.
T Consensus 84 ~~~~~Gi~~~stpf 97 (329)
T TIGR03569 84 YCESKGIEFLSTPF 97 (329)
T ss_pred HHHHhCCcEEEEeC
Confidence 99999999987655
No 93
>PLN02504 nitrilase
Probab=40.69 E-value=1.1e+02 Score=29.28 Aligned_cols=39 Identities=8% Similarity=0.062 Sum_probs=24.4
Q ss_pred HHHHHHHhcCeEEEEeeEE----------------ee-----C-CeeEEEEEEECCCCceE
Q 019166 109 RLAAMAGKYKVYLVMGVIE----------------RD-----G-YTLYCTVLFFDSQGHFL 147 (345)
Q Consensus 109 ~l~~~a~~~~i~iv~G~~~----------------~~-----~-~~~yNt~~vi~p~G~ii 147 (345)
.++..|.+++++++.-... .+ + -..+=.+.+++|+|+++
T Consensus 220 ~~rarA~En~~~Vv~aN~vg~~~~~~~~~~~~~~G~~~~~~~~~~~~~G~S~IvdP~G~vl 280 (346)
T PLN02504 220 SMRHIALEGGCFVLSANQFCRRKDYPPPPEYLFSGTEEDLTPDSIVCAGGSVIISPSGTVL 280 (346)
T ss_pred HHHHHHHccCcEEEEecccccccccCcccccccccccccccccccccCcceEEECCCCCEe
Confidence 4566788999998764321 00 1 12345678888898865
No 94
>PLN00202 beta-ureidopropionase
Probab=40.57 E-value=1.2e+02 Score=29.92 Aligned_cols=39 Identities=10% Similarity=-0.010 Sum_probs=25.0
Q ss_pred HHHHHHHhcCeEEEEeeEE-ee----------C-------CeeEEEEEEECCCCceE
Q 019166 109 RLAAMAGKYKVYLVMGVIE-RD----------G-------YTLYCTVLFFDSQGHFL 147 (345)
Q Consensus 109 ~l~~~a~~~~i~iv~G~~~-~~----------~-------~~~yNt~~vi~p~G~ii 147 (345)
.++..|.+++++++.-... .+ + ..++=.+.+++|+|+++
T Consensus 284 ~~raRAiEN~~fvv~aNrvG~~~~~~~~~~~~g~~~~~~~~~f~G~S~Iv~P~G~vl 340 (405)
T PLN00202 284 EARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDFGHFYGSSHFSAPDASCT 340 (405)
T ss_pred HHHHHHHhcCCEEEEeccccccccccccccccccccccccccccceeEEEcCCCCEe
Confidence 4566677888888764321 11 1 24567788899999865
No 95
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=40.56 E-value=52 Score=30.16 Aligned_cols=67 Identities=13% Similarity=0.172 Sum_probs=38.9
Q ss_pred HHHHHHCCCeEEEEcCCCC--h----hhHhhhhhheeeecCeEEEEeCcccccCCCCCCCCCccCCCcCCCCCCCccccc
Q 019166 195 RTAMYAKGIEIYCAPTADS--R----EVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSGTEQDLTPDSIVCAG 268 (345)
Q Consensus 195 ~r~~~~~ga~li~~ps~~~--~----~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 268 (345)
.+..+.+|+++++.|-..- . ......++..|.+++++++.....-. .+...++-
T Consensus 32 i~~a~~~ga~lvvfPE~~l~g~~~~~~~~~~~l~~~ak~~~i~ii~G~~~~~--------------------~~~~~~~N 91 (270)
T cd07571 32 TRELADEKPDLVVWPETALPFDLQRDPDALARLARAARAVGAPLLTGAPRRE--------------------PGGGRYYN 91 (270)
T ss_pred HhhcccCCCCEEEecCCcCCcccccCHHHHHHHHHHHHhcCCeEEEeeeeec--------------------cCCCceEE
Confidence 3444567899999986541 1 12233345567789998887442101 11013344
Q ss_pred eeEEECCCCcccc
Q 019166 269 GSVIISPSGSVLA 281 (345)
Q Consensus 269 ~S~ii~p~G~vl~ 281 (345)
...+++|+|+++.
T Consensus 92 s~~~i~~~G~i~~ 104 (270)
T cd07571 92 SALLLDPGGGILG 104 (270)
T ss_pred EEEEECCCCCCcC
Confidence 5678899998653
No 96
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=39.91 E-value=1.6e+02 Score=24.05 Aligned_cols=26 Identities=8% Similarity=-0.019 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEcc
Q 019166 39 TPATLGKAERLLAEAAGYGSQLVVFP 64 (345)
Q Consensus 39 ~~~n~~~i~~~i~~A~~~gadliVfP 64 (345)
.......+.++.++..+.++.+|-..
T Consensus 46 C~~~~~~l~~~~~~~~~~~v~vi~Is 71 (154)
T PRK09437 46 CTVQACGLRDNMDELKKAGVVVLGIS 71 (154)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 45556677777777777888887764
No 97
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=38.78 E-value=77 Score=28.93 Aligned_cols=73 Identities=12% Similarity=0.114 Sum_probs=44.3
Q ss_pred HHHHHHHHCCCeEEEEcCCCC------h----------hhHhhhhhheeeecCeEEEEeCcccccCCCCCCCCCccCCCc
Q 019166 193 LLRTAMYAKGIEIYCAPTADS------R----------EVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSGTE 256 (345)
Q Consensus 193 e~~r~~~~~ga~li~~ps~~~------~----------~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~~~~~~ 256 (345)
|+.++.+.+||+++|.|-+++ . ..+..-.+..|.++++|+-.....
T Consensus 38 eLi~eA~~k~A~~iflPE~~dFi~~n~~esi~Lae~l~~k~m~~y~elar~~nIwlSlgg~~------------------ 99 (295)
T KOG0807|consen 38 ELISEAAQKGAKLIFLPEAFDFIGQNPLESIELAEPLDGKFMEQYRELARSHNIWLSLGGHH------------------ 99 (295)
T ss_pred HHHHHHHHcCCCEEEcchhhhhhcCCcccceecccccChHHHHHHHHHHHhcCeeEEecccc------------------
Confidence 678888999999999998752 0 011111234556888887433221
Q ss_pred CCCCCCCccccceeEEECCCCcccccC
Q 019166 257 QDLTPDSIVCAGGSVIISPSGSVLAGP 283 (345)
Q Consensus 257 ~~~~~~~~~~~G~S~ii~p~G~vl~~~ 283 (345)
...+.+...-.-...++|..|++++.-
T Consensus 100 ~r~~~~~~k~~N~hl~id~~G~i~a~Y 126 (295)
T KOG0807|consen 100 ERSDDGNQKLRNTHLLIDSKGEIRAEY 126 (295)
T ss_pred CCCccccceeeeeEEEEcCCchHHHHH
Confidence 111122334455678889999888763
No 98
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=38.22 E-value=1.7e+02 Score=27.10 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=26.6
Q ss_pred HHHHHhcCeEEEEeeE--EeeCCeeEEEEEEECCCCceEee
Q 019166 111 AAMAGKYKVYLVMGVI--ERDGYTLYCTVLFFDSQGHFLGK 149 (345)
Q Consensus 111 ~~~a~~~~i~iv~G~~--~~~~~~~yNt~~vi~p~G~ii~~ 149 (345)
+.-|.+++++++.... +..+..++=.+.+++|+|+++..
T Consensus 220 ~arA~en~~~vv~~n~~G~~~~~~~~G~S~ii~p~G~vla~ 260 (302)
T cd07569 220 QAGAYQNGTWVVAAAKAGMEDGCDLIGGSCIVAPTGEIVAQ 260 (302)
T ss_pred hhhhhcccceEEEeeccccCCCceEecceEEECCCCCEEEe
Confidence 3346678888887543 22344667778899999997643
No 99
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=38.02 E-value=1.5e+02 Score=26.99 Aligned_cols=26 Identities=15% Similarity=0.339 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEcc
Q 019166 39 TPATLGKAERLLAEAAGYGSQLVVFP 64 (345)
Q Consensus 39 ~~~n~~~i~~~i~~A~~~gadliVfP 64 (345)
.+..++.+.+.++.|...|++.+++.
T Consensus 80 r~~~~~~~~~~i~~A~~lG~~~v~~~ 105 (279)
T cd00019 80 REKSIERLKDEIERCEELGIRLLVFH 105 (279)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEC
Confidence 56788999999999999999998873
No 100
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=37.25 E-value=42 Score=28.33 Aligned_cols=65 Identities=20% Similarity=0.297 Sum_probs=41.0
Q ss_pred HHHHHHHCCCeEEEEcCCCC--h---------------------hhHhhhhhheeeecCeEEEEeCcccccCCCCCCCCC
Q 019166 194 LRTAMYAKGIEIYCAPTADS--R---------------------EVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEY 250 (345)
Q Consensus 194 ~~r~~~~~ga~li~~ps~~~--~---------------------~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~ 250 (345)
+.+..+.+|+|+++.|-.+- . ..+...+...|.+++++++..-. ..
T Consensus 26 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i~~G~~-~~---------- 94 (186)
T PF00795_consen 26 LIEEAARQGADLVVFPEMALPGYPNPGWCEDDFADLDEFAEPLDGPYLERLAELAKENGITIVAGIP-ER---------- 94 (186)
T ss_dssp HHHHHHHTTESEEEEETTTTTCS-GGGSGHSSHHHHHHHHBHSTSHHHHHHHHHHHHHTSEEEEEEE-EE----------
T ss_pred HHHHHHHCCCCEEEcCcchhcccccccccccccchhhhhccccccHHHHHHHHHHHhcCCccccccc-cc----------
Confidence 34455678999999986531 1 12233345678889998887622 11
Q ss_pred ccCCCcCCCCCCCccccceeEEECCCCccc
Q 019166 251 EFSGTEQDLTPDSIVCAGGSVIISPSGSVL 280 (345)
Q Consensus 251 ~~~~~~~~~~~~~~~~~G~S~ii~p~G~vl 280 (345)
+...++-...+++|+|+++
T Consensus 95 -----------~~~~~~N~~~~~~~~g~~~ 113 (186)
T PF00795_consen 95 -----------DDGGLYNSAVVIDPDGEIL 113 (186)
T ss_dssp -----------ETTEEEEEEEEEETTSEEE
T ss_pred -----------ccccccceeEEEEeeeccc
Confidence 1112555677889999887
No 101
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=37.01 E-value=72 Score=29.82 Aligned_cols=62 Identities=16% Similarity=0.173 Sum_probs=35.9
Q ss_pred CCCeEEEEcCCC--Ch------hh-----------HhhhhhheeeecCeEEEEeCcccccCCCCCCCCCccCCCcCCCCC
Q 019166 201 KGIEIYCAPTAD--SR------EV-----------WQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSGTEQDLTP 261 (345)
Q Consensus 201 ~ga~li~~ps~~--~~------~~-----------~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~~~~~~~~~~~ 261 (345)
+|+|||+.|=.+ +. .. ....++..|.+++++++.... -. .. .
T Consensus 35 ~gadLIVfPEl~ltGY~~~~~~~~~~~ae~~~~g~~~~~l~~lAk~~~i~Iv~G~~-e~-----------------~~-~ 95 (295)
T cd07566 35 KKPDILVLPELALTGYNFHSLEHIKPYLEPTTSGPSFEWAREVAKKFNCHVVIGYP-EK-----------------VD-E 95 (295)
T ss_pred CCCcEEEcCCCCcccCCcccHHHHHHHHHhcCCCHHHHHHHHHHHhcCCEEEEeee-Ee-----------------cC-C
Confidence 799999998643 11 00 112234567889998876421 11 00 1
Q ss_pred CCccccceeEEECCCCcccc
Q 019166 262 DSIVCAGGSVIISPSGSVLA 281 (345)
Q Consensus 262 ~~~~~~G~S~ii~p~G~vl~ 281 (345)
+...++-.+.+++|+|+++.
T Consensus 96 ~~~~~yNta~vi~~~G~ii~ 115 (295)
T cd07566 96 SSPKLYNSALVVDPEGEVVF 115 (295)
T ss_pred CCCceEEEEEEEcCCCeEEE
Confidence 00135566889999998763
No 102
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=35.21 E-value=78 Score=30.27 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCC
Q 019166 40 PATLGKAERLLAEAAGYGSQLVVFPEAFIGGYP 72 (345)
Q Consensus 40 ~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~ 72 (345)
.-+++++++.++.+++.+.|+++-| .+++|+-
T Consensus 238 dYdv~kvle~aE~i~~a~idvlIaP-v~lPG~N 269 (414)
T COG2100 238 DYDVKKVLEVAEYIANAGIDVLIAP-VWLPGVN 269 (414)
T ss_pred ccCHHHHHHHHHHHHhCCCCEEEee-eecCCcC
Confidence 4678899999999999999999999 5677765
No 103
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=35.12 E-value=1.3e+02 Score=23.67 Aligned_cols=55 Identities=18% Similarity=0.400 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCHHHHHHHHHHHhc-CeEE
Q 019166 43 LGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKY-KVYL 121 (345)
Q Consensus 43 ~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~l~~~a~~~-~i~i 121 (345)
-+++...+++....++|.|-|.=.-..+++.. .-+.++.+.+..++. |+.|
T Consensus 51 g~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~----------------------------~CP~~~~~~~~I~~~~gi~V 102 (107)
T PF08821_consen 51 GRKLVRRIKKLKKNGADVIHLSSCMVKGNPHG----------------------------PCPHIDEIKKIIEEKFGIEV 102 (107)
T ss_pred hhHHHHHHHHHHHCCCCEEEEcCCEecCCCCC----------------------------CCCCHHHHHHHHHHHhCCCE
Confidence 45566666666788999999987765544311 113355665555554 9999
Q ss_pred EEee
Q 019166 122 VMGV 125 (345)
Q Consensus 122 v~G~ 125 (345)
|.|+
T Consensus 103 V~GT 106 (107)
T PF08821_consen 103 VEGT 106 (107)
T ss_pred eeec
Confidence 9885
No 104
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=34.68 E-value=1.9e+02 Score=22.83 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=18.1
Q ss_pred eeEEEEEEECCCCceEeeeecCCC
Q 019166 132 TLYCTVLFFDSQGHFLGKHRKIMP 155 (345)
Q Consensus 132 ~~yNt~~vi~p~G~ii~~y~K~~l 155 (345)
....+.++++++|+|+..+.-..+
T Consensus 108 ~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 108 LAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred ceeEEEEEECCCCcEEEEEecCCC
Confidence 455688999999998877665443
No 105
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=34.20 E-value=97 Score=28.54 Aligned_cols=74 Identities=12% Similarity=0.104 Sum_probs=48.7
Q ss_pred HHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCHHHHHHHHHHHhcCeEEEEee
Q 019166 46 AERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYKVYLVMGV 125 (345)
Q Consensus 46 i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~l~~~a~~~~i~iv~G~ 125 (345)
-.-+|..|..++++++++=|-.. |. |.. ..-+.++.+++++++.++.+++-.
T Consensus 145 Qrv~iArALaQ~~~iLLLDEPTs--~L---------------Di~-----------~Q~evl~ll~~l~~~~~~tvv~vl 196 (258)
T COG1120 145 QRVLIARALAQETPILLLDEPTS--HL---------------DIA-----------HQIEVLELLRDLNREKGLTVVMVL 196 (258)
T ss_pred HHHHHHHHHhcCCCEEEeCCCcc--cc---------------CHH-----------HHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34477888889999999998522 21 111 112578999999999999888877
Q ss_pred EEeeCC-eeEEEEEEECCCCceEe
Q 019166 126 IERDGY-TLYCTVLFFDSQGHFLG 148 (345)
Q Consensus 126 ~~~~~~-~~yNt~~vi~p~G~ii~ 148 (345)
...+-. ++-...+++. +|+++.
T Consensus 197 HDlN~A~ryad~~i~lk-~G~i~a 219 (258)
T COG1120 197 HDLNLAARYADHLILLK-DGKIVA 219 (258)
T ss_pred cCHHHHHHhCCEEEEEE-CCeEEe
Confidence 654322 3444455554 888653
No 106
>cd07990 LPLAT_LCLAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as Lysocardiolipin acyltransferase 1 (LCLAT1) or 1-acyl-sn-glycerol-3-phosphate acyltransferase and similar proteins.
Probab=31.91 E-value=91 Score=26.83 Aligned_cols=27 Identities=22% Similarity=0.226 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHhC--CCcEEEccCcC
Q 019166 41 ATLGKAERLLAEAAGY--GSQLVVFPEAF 67 (345)
Q Consensus 41 ~n~~~i~~~i~~A~~~--gadliVfPE~~ 67 (345)
...+.+.+.++...+. +..+++|||..
T Consensus 86 ~d~~~i~~~~~~l~~~~~~~~lviFPEGT 114 (193)
T cd07990 86 KDEKTIKRQLKRLKDSPEPFWLLIFPEGT 114 (193)
T ss_pred HhHHHHHHHHHHHhcCCCCcEEEEeCccc
Confidence 3455666666665553 77899999984
No 107
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=30.55 E-value=41 Score=31.61 Aligned_cols=82 Identities=17% Similarity=0.119 Sum_probs=49.5
Q ss_pred eeCCeeEEEEEEECCCCceEeeeecCCCCccccceecc--CCCCC--CCeEEcCCC-------c-EEEEeecCCCc----
Q 019166 128 RDGYTLYCTVLFFDSQGHFLGKHRKIMPTALERIIWGF--GDGST--IPVFETPIG-------K-IGAAICWENRM---- 191 (345)
Q Consensus 128 ~~~~~~yNt~~vi~p~G~ii~~y~K~~l~~~E~~~f~~--~~G~~--~~vf~~~~~-------r-igv~IC~D~~f---- 191 (345)
.++...||+..|+|.||..+.+|+|.+++..|..+..+ ..|+- ...||+.+. | -+-+|+|-..+
T Consensus 122 g~l~~~yrk~hlFD~d~~~~~ry~e~~~~~~g~~f~~~~~~~gkfGi~IC~Di~F~d~A~~~~~~g~~~ivyPtaw~~~~ 201 (298)
T KOG0806|consen 122 GDGLAKYRKNHLFDTDGPGVIRYRESHLLSPGDQFTVVDTSYGKFGIFICFDIRFYDPAMILVKDGADLIVYPTAWNNEL 201 (298)
T ss_pred cchhheeeeeEEeccCCccceeeeeeeccCCCcCCCcccCCCCceEEEEEecccccchHHHHHHcCCcEEEecchHhhhc
Confidence 34568999999999999999999999887766554321 12321 234555332 1 14456665432
Q ss_pred ----hHHHHHHHHCCCeEEEEc
Q 019166 192 ----PLLRTAMYAKGIEIYCAP 209 (345)
Q Consensus 192 ----pe~~r~~~~~ga~li~~p 209 (345)
|..+..+...+|.....+
T Consensus 202 l~~~~~hw~~~~~~~a~~n~~~ 223 (298)
T KOG0806|consen 202 LSAVPLHWALLMRARANDNAAN 223 (298)
T ss_pred ccccchHHHHHHhCCcccceee
Confidence 344555666665554443
No 108
>cd07988 LPLAT_ABO13168-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Acinetobacter baumannii ATCC 17978 locus ABO13168 putative acyltransferase, and similar proteins.
Probab=29.62 E-value=1.2e+02 Score=25.50 Aligned_cols=26 Identities=12% Similarity=0.033 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhCCCcEEEccCcCCC
Q 019166 42 TLGKAERLLAEAAGYGSQLVVFPEAFIG 69 (345)
Q Consensus 42 n~~~i~~~i~~A~~~gadliVfPE~~l~ 69 (345)
.++.+.+.+++ .++-.+++|||..-+
T Consensus 82 ~~~~~~~~l~~--g~~~~l~IFPEGtR~ 107 (163)
T cd07988 82 LVEQVVEEFRR--REEFVLAIAPEGTRS 107 (163)
T ss_pred HHHHHHHHHHh--CCCcEEEEeCCCCCC
Confidence 34444444432 134579999998554
No 109
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=28.84 E-value=1.8e+02 Score=26.24 Aligned_cols=40 Identities=8% Similarity=0.038 Sum_probs=26.3
Q ss_pred CCCeEEEEcCCCC------hhhHhhhhhheeeecCeEEEEeCcccc
Q 019166 201 KGIEIYCAPTADS------REVWQASMTHIALEGGCFVLSANQFCR 240 (345)
Q Consensus 201 ~ga~li~~ps~~~------~~~~~~~~~~rA~en~~~vv~~n~~G~ 240 (345)
+++|++++..-|+ ...++..+....++.|+-+|.....-.
T Consensus 182 ~~~D~vIv~~HwG~e~~~~p~~~q~~~a~~lidaGaDiIiG~HpHv 227 (250)
T PF09587_consen 182 KKADVVIVSLHWGIEYENYPTPEQRELARALIDAGADIIIGHHPHV 227 (250)
T ss_pred cCCCEEEEEeccCCCCCCCCCHHHHHHHHHHHHcCCCEEEeCCCCc
Confidence 6799999877664 233444444566778888888776443
No 110
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.79 E-value=54 Score=24.97 Aligned_cols=41 Identities=10% Similarity=-0.099 Sum_probs=29.4
Q ss_pred HCCCeEEEEcCCCChhhHhhhhhheeeecCeEEEEeCcccc
Q 019166 200 AKGIEIYCAPTADSREVWQASMTHIALEGGCFVLSANQFCR 240 (345)
Q Consensus 200 ~~ga~li~~ps~~~~~~~~~~~~~rA~en~~~vv~~n~~G~ 240 (345)
.+.||++++++..-...-...++..|.+++.++++++..|.
T Consensus 46 i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~ 86 (97)
T PF10087_consen 46 IKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGV 86 (97)
T ss_pred cCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 45789999998763222223456678889999999987665
No 111
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=28.18 E-value=2.4e+02 Score=25.41 Aligned_cols=62 Identities=13% Similarity=0.076 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHH-HHHHHhcccCCCCHHHHHHHHHHHhc
Q 019166 39 TPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEE-FRKYHASAIDVPGPEVERLAAMAGKY 117 (345)
Q Consensus 39 ~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~l~~l~~~a~~~ 117 (345)
.+...+.+.+.++.|.+-|+..|+.+ +|+... .....+ ...+. +.+..+.+.|+++
T Consensus 80 ~~~~~~~~~~~i~~a~~lga~~i~~~----~g~~~~-----------~~~~~~~~~~~~--------~~l~~l~~~a~~~ 136 (258)
T PRK09997 80 EEEFRDGVAAAIRYARALGNKKINCL----VGKTPA-----------GFSSEQIHATLV--------ENLRYAANMLMKE 136 (258)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEC----CCCCCC-----------CCCHHHHHHHHH--------HHHHHHHHHHHHc
Confidence 45567888999999999999988753 222100 011111 11111 3567788888898
Q ss_pred CeEEEE
Q 019166 118 KVYLVM 123 (345)
Q Consensus 118 ~i~iv~ 123 (345)
|+.+.+
T Consensus 137 Gv~l~l 142 (258)
T PRK09997 137 DILLLI 142 (258)
T ss_pred CCEEEE
Confidence 887765
No 112
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=27.60 E-value=1.4e+02 Score=26.15 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEccCcCCC
Q 019166 41 ATLGKAERLLAEAAGYGSQLVVFPEAFIG 69 (345)
Q Consensus 41 ~n~~~i~~~i~~A~~~gadliVfPE~~l~ 69 (345)
.+.+.+.+..+ +.++|-.++||||...+
T Consensus 83 ~~~~~~~~~~~-~L~~G~~l~IFPEGtrs 110 (210)
T cd07986 83 KNRESLREALR-HLKNGGALIIFPAGRVS 110 (210)
T ss_pred hhHHHHHHHHH-HHhCCCEEEEECCcccc
Confidence 34444444333 34567899999998655
No 113
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=27.24 E-value=80 Score=29.07 Aligned_cols=48 Identities=23% Similarity=0.380 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcCeEEEEeeEEeeCC-e--eEEEEEEECCCCceEeeeecC
Q 019166 106 EVERLAAMAGKYKVYLVMGVIERDGY-T--LYCTVLFFDSQGHFLGKHRKI 153 (345)
Q Consensus 106 ~l~~l~~~a~~~~i~iv~G~~~~~~~-~--~yNt~~vi~p~G~ii~~y~K~ 153 (345)
+.+.+++.|+++.++...|-...+++ . .---.++++|+|+.+-.|-+.
T Consensus 211 T~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN 261 (280)
T KOG2792|consen 211 TTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRN 261 (280)
T ss_pred CHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhccc
Confidence 46889999999999998875443332 1 223457899999987666553
No 114
>PF13342 Toprim_Crpt: C-terminal repeat of topoisomerase
Probab=27.16 E-value=1.2e+02 Score=21.32 Aligned_cols=41 Identities=17% Similarity=0.094 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCeEEEEeeEEeeCCeeEEEEEEECCCCceEe
Q 019166 107 VERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLG 148 (345)
Q Consensus 107 l~~l~~~a~~~~i~iv~G~~~~~~~~~yNt~~vi~p~G~ii~ 148 (345)
-+.+.++..+..+.++-|+.- ..|+.|++.++++.++.+..
T Consensus 18 ~~~~~~Ll~~gkT~~ikGF~S-K~Gk~F~A~L~l~~~~~v~F 58 (62)
T PF13342_consen 18 DEEVKELLEKGKTGLIKGFKS-KKGKPFDAYLVLDDDKKVKF 58 (62)
T ss_pred HHHHHHHHHcCCccCccCccc-CCCCEEeEEEEEcCCCeEEe
Confidence 356778887888888888776 46889999999997776543
No 115
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=27.12 E-value=3.9e+02 Score=24.07 Aligned_cols=26 Identities=12% Similarity=0.090 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEccCc
Q 019166 41 ATLGKAERLLAEAAGYGSQLVVFPEA 66 (345)
Q Consensus 41 ~n~~~i~~~i~~A~~~gadliVfPE~ 66 (345)
.....+.+.++.|.++++|+|-++-.
T Consensus 86 ~~~~~i~~Ai~~Ai~~gadIIn~S~g 111 (247)
T cd07491 86 ITPQSAAKAIEAAVEKKVDIISMSWT 111 (247)
T ss_pred cCHHHHHHHHHHHHHCCCcEEEeeee
Confidence 34678899999999999999999843
No 116
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.82 E-value=91 Score=29.35 Aligned_cols=93 Identities=22% Similarity=0.259 Sum_probs=54.0
Q ss_pred CeEEcCCCcEEEEeecCCCchHHHHHHHHCCCeEEEEcCCCChhhHhhhhhheeeecCeEEEEeCcccccCCCCCCCCCc
Q 019166 172 PVFETPIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADSREVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYE 251 (345)
Q Consensus 172 ~vf~~~~~rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~ 251 (345)
..|+-..+++|+.+-.+.----....+...|-++.+.|+.. ...+-|..-|.+.+.-...+...
T Consensus 40 saf~~~dgs~g~a~~~eaGk~v~~~~lpaR~Hgi~~~p~~~-------ravafARrPGtf~~vfD~~~~~~--------- 103 (366)
T COG3490 40 SAFDARDGSFGAATLSEAGKIVFATALPARGHGIAFHPALP-------RAVAFARRPGTFAMVFDPNGAQE--------- 103 (366)
T ss_pred eeeeccCCceeEEEEccCCceeeeeecccccCCeecCCCCc-------ceEEEEecCCceEEEECCCCCcC---------
Confidence 34555667777766555332222333445677777777753 33345556666655555544410
Q ss_pred cCCCcCCCCCCCccccceeEEECCCCcccccCC
Q 019166 252 FSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPN 284 (345)
Q Consensus 252 ~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~ 284 (345)
+-......+..|+|+ .+++|+|++|...+
T Consensus 104 ---pv~~~s~~~RHfyGH-Gvfs~dG~~LYATE 132 (366)
T COG3490 104 ---PVTLVSQEGRHFYGH-GVFSPDGRLLYATE 132 (366)
T ss_pred ---cEEEecccCceeecc-cccCCCCcEEEeec
Confidence 011123566789998 57899999997764
No 117
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=26.70 E-value=1.3e+02 Score=27.80 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhCCCc-EEEccCc
Q 019166 41 ATLGKAERLLAEAAGYGSQ-LVVFPEA 66 (345)
Q Consensus 41 ~n~~~i~~~i~~A~~~gad-liVfPE~ 66 (345)
.+.+...++.+.|.+.|+| +++.|-+
T Consensus 77 ~s~~~~i~~a~~a~~~Gad~v~v~pP~ 103 (285)
T TIGR00674 77 NATEEAISLTKFAEDVGADGFLVVTPY 103 (285)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 4678888899999999998 5555644
No 118
>smart00563 PlsC Phosphate acyltransferases. Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin, the product of the gene mutated in patients with Barth syndrome, is a member of this family.
Probab=26.03 E-value=89 Score=23.64 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEccCcCCC
Q 019166 41 ATLGKAERLLAEAAGYGSQLVVFPEAFIG 69 (345)
Q Consensus 41 ~n~~~i~~~i~~A~~~gadliVfPE~~l~ 69 (345)
.+.+.+.+.++ +.+.|..+++|||....
T Consensus 60 ~~~~~~~~~~~-~l~~~~~~~ifPeG~~~ 87 (118)
T smart00563 60 LARAALREAVR-LLRDGGWLLIFPEGTRS 87 (118)
T ss_pred HHHHHHHHHHH-HHhCCCEEEEeCCcccC
Confidence 45555555554 45568899999998653
No 119
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=25.64 E-value=1.3e+02 Score=27.58 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHhCCCc-EEEccCc
Q 019166 41 ATLGKAERLLAEAAGYGSQ-LVVFPEA 66 (345)
Q Consensus 41 ~n~~~i~~~i~~A~~~gad-liVfPE~ 66 (345)
.+.+...++++.|.+.|+| +++.|-.
T Consensus 79 ~~~~~~~~~a~~a~~~G~d~v~~~~P~ 105 (284)
T cd00950 79 NNTAEAIELTKRAEKAGADAALVVTPY 105 (284)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEEcccc
Confidence 4577888899999999999 5555544
No 120
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=24.66 E-value=3.1e+02 Score=23.24 Aligned_cols=63 Identities=19% Similarity=0.183 Sum_probs=34.2
Q ss_pred ChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCHHHHHHHHHHHhc
Q 019166 38 DTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKY 117 (345)
Q Consensus 38 d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~l~~~a~~~ 117 (345)
+.+.-.+.+.++++.+.+.++.+|++-=.....+.. ... .........+.++++|+++
T Consensus 88 ~~~~~~~nl~~ii~~~~~~~~~~il~tp~~~~~~~~-------------~~~---------~~~~~~~~~~~~~~~a~~~ 145 (198)
T cd01821 88 PYTTYKEYLRRYIAEARAKGATPILVTPVTRRTFDE-------------GGK---------VEDTLGDYPAAMRELAAEE 145 (198)
T ss_pred cHHHHHHHHHHHHHHHHHCCCeEEEECCccccccCC-------------CCc---------ccccchhHHHHHHHHHHHh
Confidence 344555666666666666788888762111111110 000 0011134677899999999
Q ss_pred CeEEE
Q 019166 118 KVYLV 122 (345)
Q Consensus 118 ~i~iv 122 (345)
++.++
T Consensus 146 ~~~~v 150 (198)
T cd01821 146 GVPLI 150 (198)
T ss_pred CCCEE
Confidence 87764
No 121
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=24.32 E-value=1.5e+02 Score=26.76 Aligned_cols=53 Identities=15% Similarity=0.238 Sum_probs=32.6
Q ss_pred EEEeecCCCchHHHHHHHHCCCeEEEE--cCCCC------hhhHhhhhhheeeecCeEEEEe
Q 019166 182 GAAICWENRMPLLRTAMYAKGIEIYCA--PTADS------REVWQASMTHIALEGGCFVLSA 235 (345)
Q Consensus 182 gv~IC~D~~fpe~~r~~~~~ga~li~~--ps~~~------~~~~~~~~~~rA~en~~~vv~~ 235 (345)
++++|-|.. ++..+....+|+|+|+. |..+. ...........+++|++.+.++
T Consensus 34 ~V~~~ld~t-~~vi~~A~~~~~dlIItHHP~~f~~~~~~~~~~~~~~~~~~li~~~I~vy~~ 94 (241)
T PF01784_consen 34 KVLVALDAT-PEVIEEAIEKGADLIITHHPLFFKPLKSLTGDDYKGKIIEKLIKNGISVYSA 94 (241)
T ss_dssp EEEEESS-S-HHHHHHHHHTT-SEEEESS-SSSSTSSHCHCHSHHHHHHHHHHHTT-EEEEE
T ss_pred EEEEEEeCC-HHHHHHHHHcCCCEEEEcCchhhcCCccccccchhhHHHHHHHHCCCEEEEe
Confidence 667888854 55677778899999999 66552 1112233445677799988776
No 122
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=24.11 E-value=1.3e+02 Score=27.47 Aligned_cols=45 Identities=27% Similarity=0.231 Sum_probs=27.2
Q ss_pred eeccCCCceeeeecCCCCCCcceEEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEc
Q 019166 3 IVASDAPLFAEVDMGADSSAPTVRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVF 63 (345)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVf 63 (345)
|||+++| +|.+.=-|--+|.++. .....+.|.+. -..++|||||-
T Consensus 77 IVaVDLQ----------~MaPI~GV~qlq~DIT---~~stae~Ii~h---fggekAdlVvc 121 (294)
T KOG1099|consen 77 IVAVDLQ----------PMAPIEGVIQLQGDIT---SASTAEAIIEH---FGGEKADLVVC 121 (294)
T ss_pred EEEEecc----------cCCccCceEEeecccC---CHhHHHHHHHH---hCCCCccEEEe
Confidence 7888886 5545444555666554 23344444444 45578999986
No 123
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=23.62 E-value=1.1e+02 Score=25.94 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=18.0
Q ss_pred eEEEEEEECCCCceEeeeecCCC
Q 019166 133 LYCTVLFFDSQGHFLGKHRKIMP 155 (345)
Q Consensus 133 ~yNt~~vi~p~G~ii~~y~K~~l 155 (345)
.--+.+||+++|.|...+++..+
T Consensus 119 ~~R~TfvId~dG~I~~~~~~v~~ 141 (157)
T COG1225 119 IERSTFVIDPDGKIRYVWRKVKV 141 (157)
T ss_pred ccceEEEECCCCeEEEEecCCCC
Confidence 55678899999998888876643
No 124
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=23.57 E-value=1.7e+02 Score=27.58 Aligned_cols=26 Identities=4% Similarity=-0.102 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHhCCCc-EEEccCc
Q 019166 41 ATLGKAERLLAEAAGYGSQ-LVVFPEA 66 (345)
Q Consensus 41 ~n~~~i~~~i~~A~~~gad-liVfPE~ 66 (345)
.+.+...++++.|.+.|+| ++|+|-+
T Consensus 87 ~~t~~ai~~a~~A~~~Gad~vlv~~P~ 113 (309)
T cd00952 87 LNTRDTIARTRALLDLGADGTMLGRPM 113 (309)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEECCCc
Confidence 4578888899999999998 6666654
No 125
>cd06551 LPLAT Lysophospholipid acyltransferases (LPLATs) of glycerophospholipid biosynthesis. Lysophospholipid acyltransferase (LPLAT) superfamily members are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis. These proteins catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this superfamily are LPLATs such as glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB), 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), lysophosphatidylcholine acyltransferase 1 (LPCAT-1), lysophosphatidylethanolamine acyltransferase (LPEAT, also known as, MBOAT2, membrane-bound O-acyltransferase domain-containing protein 2), lipid A biosynthesis lauroyl/myristoyl acyltransferase, 2-acylglycerol O-acyltransferase (MGAT), dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-p
Probab=23.51 E-value=4.1e+02 Score=22.03 Aligned_cols=57 Identities=19% Similarity=0.090 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhC-CCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCHHHHHHHHHHHhcCeEEE
Q 019166 44 GKAERLLAEAAGY-GSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYKVYLV 122 (345)
Q Consensus 44 ~~i~~~i~~A~~~-gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~l~~~a~~~~i~iv 122 (345)
+.+..+++. .++ |..+++|||....... ....++..-+..+|++.++.|+
T Consensus 88 ~~~~~~~~~-l~~~g~~v~ifPeG~~~~~~----------------------------~~~~~~~~g~~~la~~~~~~Iv 138 (187)
T cd06551 88 KSLKYVARL-LSKPGSVVWIFPEGTRTRRD----------------------------KRPLQFKPGVAHLAEKAGVPIV 138 (187)
T ss_pred HHHHHHHHH-HhcCCcEEEEeCCcccCCCC----------------------------CCcccccchHHHHHHHcCCcEE
Confidence 334444443 445 8899999998543211 0011234456777888888888
Q ss_pred EeeEEee
Q 019166 123 MGVIERD 129 (345)
Q Consensus 123 ~G~~~~~ 129 (345)
.-++...
T Consensus 139 Pv~i~~~ 145 (187)
T cd06551 139 PVALRYT 145 (187)
T ss_pred EEEEecc
Confidence 7766544
No 126
>PTZ00261 acyltransferase; Provisional
Probab=23.17 E-value=2.1e+02 Score=27.69 Aligned_cols=28 Identities=21% Similarity=0.409 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhCCCcEEEccCcCCC
Q 019166 42 TLGKAERLLAEAAGYGSQLVVFPEAFIG 69 (345)
Q Consensus 42 n~~~i~~~i~~A~~~gadliVfPE~~l~ 69 (345)
..+.+.+.+++..++|-.++||||..-+
T Consensus 200 a~~~v~~~~~e~Lk~G~sLvIFPEGTRS 227 (355)
T PTZ00261 200 KQAQVQQAIDAHLRLGGSLAFFPEGAIN 227 (355)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCcCCc
Confidence 3444555555566778899999998554
No 127
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=22.94 E-value=3.2e+02 Score=24.38 Aligned_cols=20 Identities=20% Similarity=0.129 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEc
Q 019166 43 LGKAERLLAEAAGYGSQLVVF 63 (345)
Q Consensus 43 ~~~i~~~i~~A~~~gadliVf 63 (345)
.+.+.+.++++++ ++|+||.
T Consensus 159 ~~~i~~~i~~lr~-~~D~vIv 178 (239)
T smart00854 159 REKILADIARARK-KADVVIV 178 (239)
T ss_pred HHHHHHHHHHHhc-cCCEEEE
Confidence 6778888888775 6998875
No 128
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=22.91 E-value=4.4e+02 Score=21.79 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=18.1
Q ss_pred ChHHHHHHHHHHHHHHHhCCCcEEEcc
Q 019166 38 DTPATLGKAERLLAEAAGYGSQLVVFP 64 (345)
Q Consensus 38 d~~~n~~~i~~~i~~A~~~gadliVfP 64 (345)
+.++-.+.+..+++++...++++|++.
T Consensus 86 ~~~~~~~~~~~~i~~i~~~~~~vil~~ 112 (185)
T cd01832 86 DPDTYRADLEEAVRRLRAAGARVVVFT 112 (185)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence 344556666666666666788888874
No 129
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=22.48 E-value=3.1e+02 Score=23.25 Aligned_cols=68 Identities=13% Similarity=0.154 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCHHHHHHHHHHHhcCeEEE
Q 019166 43 LGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYKVYLV 122 (345)
Q Consensus 43 ~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~l~~~a~~~~i~iv 122 (345)
-++-.+.++..++.|.|-||+--....+... + |... .+ ..........++.+.++|.++|+.|.
T Consensus 19 ~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~---y--------ps~~--~~---~~~~~~~~d~l~~~L~~A~~~Gmkv~ 82 (166)
T PF14488_consen 19 PAQWREEFRAMKAIGIDTLILQWTGYGGFAF---Y--------PSKL--SP---GGFYMPPVDLLEMILDAADKYGMKVF 82 (166)
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEeecCCccc---C--------Cccc--cC---ccccCCcccHHHHHHHHHHHcCCEEE
Confidence 3445555666677899999998665554331 1 1111 00 01112234578999999999999999
Q ss_pred EeeE
Q 019166 123 MGVI 126 (345)
Q Consensus 123 ~G~~ 126 (345)
+|..
T Consensus 83 ~Gl~ 86 (166)
T PF14488_consen 83 VGLY 86 (166)
T ss_pred EeCC
Confidence 9976
No 130
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=21.96 E-value=3.3e+02 Score=19.97 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCeEEEEeeEEeeCCeeEEEEEEECCCCceEee
Q 019166 106 EVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGK 149 (345)
Q Consensus 106 ~l~~l~~~a~~~~i~iv~G~~~~~~~~~yNt~~vi~p~G~ii~~ 149 (345)
-++.+.+.+++.|+.++.+......+ .....+.+|+|.++..
T Consensus 66 dv~~~~~~l~~~G~~~~~~~~~~~~g--~~~~~~~DPdG~~ie~ 107 (108)
T PF12681_consen 66 DVDALYERLKELGAEIVTEPRDDPWG--QRSFYFIDPDGNRIEF 107 (108)
T ss_dssp HHHHHHHHHHHTTSEEEEEEEEETTS--EEEEEEE-TTS-EEEE
T ss_pred CHHHHHHHHHHCCCeEeeCCEEcCCC--eEEEEEECCCCCEEEe
Confidence 46677777778898887765543333 3688999999987643
No 131
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=21.75 E-value=1.7e+02 Score=24.15 Aligned_cols=70 Identities=14% Similarity=0.086 Sum_probs=36.2
Q ss_pred HHHHHHHCCCeEEEEcCCCChhhHhhhhhheeeecCeEEEEeCcccccCCCCCCCCCccCCCcCCCCCCCccccceeEEE
Q 019166 194 LRTAMYAKGIEIYCAPTADSREVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSGTEQDLTPDSIVCAGGSVII 273 (345)
Q Consensus 194 ~~r~~~~~ga~li~~ps~~~~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~S~ii 273 (345)
+...+...+.+++.+......+.|....+...+. ..++. +..+.-. ..-+....-..+++
T Consensus 86 ~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~--~~~~~-d~~~~~~-----------------~~~~v~~~P~~~li 145 (173)
T PRK03147 86 LYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLT--FPVAI-DKGRQVI-----------------DAYGVGPLPTTFLI 145 (173)
T ss_pred HHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCC--ceEEE-CCcchHH-----------------HHcCCCCcCeEEEE
Confidence 3334444567888776655556666665544433 22222 2211100 01112233457899
Q ss_pred CCCCcccccC
Q 019166 274 SPSGSVLAGP 283 (345)
Q Consensus 274 ~p~G~vl~~~ 283 (345)
+++|+++...
T Consensus 146 d~~g~i~~~~ 155 (173)
T PRK03147 146 DKDGKVVKVI 155 (173)
T ss_pred CCCCcEEEEE
Confidence 9999988653
No 132
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=21.62 E-value=5.7e+02 Score=22.67 Aligned_cols=61 Identities=15% Similarity=0.065 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCHHHHHHHHHHHhcCeE
Q 019166 41 ATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYKVY 120 (345)
Q Consensus 41 ~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~l~~~a~~~~i~ 120 (345)
...+.+.+.++.|..-|+..|.++= |.. +.+.. .+..++.. -+.++.+.+.|+++|+.
T Consensus 81 ~~~~~~~~~i~~a~~lg~~~i~~~~----g~~-------------~~~~~-~~~~~~~~----~~~l~~l~~~A~~~gi~ 138 (254)
T TIGR03234 81 EFREGVALAIAYARALGCPQVNCLA----GKR-------------PAGVS-PEEARATL----VENLRYAADALDRIGLT 138 (254)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECc----CCC-------------CCCCC-HHHHHHHH----HHHHHHHHHHHHhcCCE
Confidence 3457778889999999999886542 221 11100 01111111 13577788889999988
Q ss_pred EEE
Q 019166 121 LVM 123 (345)
Q Consensus 121 iv~ 123 (345)
+.+
T Consensus 139 l~l 141 (254)
T TIGR03234 139 LLI 141 (254)
T ss_pred EEE
Confidence 765
No 133
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=21.54 E-value=2.4e+02 Score=23.18 Aligned_cols=25 Identities=12% Similarity=0.280 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEc
Q 019166 39 TPATLGKAERLLAEAAGYGSQLVVF 63 (345)
Q Consensus 39 ~~~n~~~i~~~i~~A~~~gadliVf 63 (345)
.+...+.+.++++.+.+.++++|+.
T Consensus 83 ~~~~~~~l~~li~~~~~~~~~vil~ 107 (177)
T cd01822 83 PDQTRANLRQMIETAQARGAPVLLV 107 (177)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 4555666677777777678888875
No 134
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=21.13 E-value=57 Score=29.80 Aligned_cols=65 Identities=12% Similarity=0.196 Sum_probs=44.3
Q ss_pred HhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCHHHHHHHHHHHhcCeEEEEeeEEeeCCee
Q 019166 54 AGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYKVYLVMGVIERDGYTL 133 (345)
Q Consensus 54 ~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~l~~~a~~~~i~iv~G~~~~~~~~~ 133 (345)
..-.+|++++=|..-.|-. .+. ....+.+.++.++..+.|+++.....=.++
T Consensus 162 ~~~~pdILllDEvlavGD~---------------------~F~-------~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~ 213 (249)
T COG1134 162 THVEPDILLLDEVLAVGDA---------------------AFQ-------EKCLERLNELVEKNKTIVLVSHDLGAIKQY 213 (249)
T ss_pred hhcCCCEEEEehhhhcCCH---------------------HHH-------HHHHHHHHHHHHcCCEEEEEECCHHHHHHh
Confidence 3457899999997544422 122 246788888887888888877543322468
Q ss_pred EEEEEEECCCCceE
Q 019166 134 YCTVLFFDSQGHFL 147 (345)
Q Consensus 134 yNt~~vi~p~G~ii 147 (345)
.|+++++. +|++.
T Consensus 214 Cd~~i~l~-~G~i~ 226 (249)
T COG1134 214 CDRAIWLE-HGQIR 226 (249)
T ss_pred cCeeEEEe-CCEEE
Confidence 89999998 89764
No 135
>cd07993 LPLAT_DHAPAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-phosphate O-acyltransferase 1) and similar proteins.
Probab=21.10 E-value=3.4e+02 Score=23.51 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhCCCcEEEccCcCCC
Q 019166 44 GKAERLLAEAAGYGSQLVVFPEAFIG 69 (345)
Q Consensus 44 ~~i~~~i~~A~~~gadliVfPE~~l~ 69 (345)
+.+.+.+.+..++|-.+++|||..-+
T Consensus 88 ~~~~~~~~~~l~~g~~l~iFPEGtrs 113 (205)
T cd07993 88 AVLQEYVQELLKNGQPLEFFIEGTRS 113 (205)
T ss_pred HHHHHHHHHHHhCCceEEEEcCCCCC
Confidence 44555566667789999999998655
No 136
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=20.58 E-value=4.4e+02 Score=24.90 Aligned_cols=44 Identities=23% Similarity=0.178 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhcCeEEEEeeEEeeC-CeeEEEEEEECCCCceEee
Q 019166 105 PEVERLAAMAGKYKVYLVMGVIERDG-YTLYCTVLFFDSQGHFLGK 149 (345)
Q Consensus 105 ~~l~~l~~~a~~~~i~iv~G~~~~~~-~~~yNt~~vi~p~G~ii~~ 149 (345)
...+++++..+++++.|+..+..-++ ..+.+..++|+ +|+++..
T Consensus 194 ~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~-~Gqlv~d 238 (325)
T COG4586 194 NIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLID-QGQLVFD 238 (325)
T ss_pred HHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEee-CCcEeec
Confidence 46788999999999999998764433 47889999998 8988753
No 137
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=20.52 E-value=2.4e+02 Score=21.30 Aligned_cols=46 Identities=17% Similarity=0.122 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhcCeEEEEeeEEeeCCeeEEEEEEECCCCceEeee
Q 019166 105 PEVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKH 150 (345)
Q Consensus 105 ~~l~~l~~~a~~~~i~iv~G~~~~~~~~~yNt~~vi~p~G~ii~~y 150 (345)
+.++.+.+.+++.|+.+..+-.......-...+++.||+|..+..+
T Consensus 70 ~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~ 115 (120)
T cd08362 70 ADVDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFS 115 (120)
T ss_pred HHHHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEE
Confidence 4567777777788888765422222111244678999999877544
No 138
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=20.44 E-value=2.1e+02 Score=26.42 Aligned_cols=26 Identities=15% Similarity=0.038 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEc-cCc
Q 019166 41 ATLGKAERLLAEAAGYGSQLVVF-PEA 66 (345)
Q Consensus 41 ~n~~~i~~~i~~A~~~gadliVf-PE~ 66 (345)
.+++...++++.|.+.|+|-|+. |-+
T Consensus 80 ~~~~~~i~~a~~a~~~G~d~v~~~pP~ 106 (292)
T PRK03170 80 NSTAEAIELTKFAEKAGADGALVVTPY 106 (292)
T ss_pred chHHHHHHHHHHHHHcCCCEEEECCCc
Confidence 46788888999999999985544 543
No 139
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=20.14 E-value=40 Score=23.19 Aligned_cols=17 Identities=24% Similarity=0.395 Sum_probs=11.7
Q ss_pred ceeEEECCCCcccccCC
Q 019166 268 GGSVIISPSGSVLAGPN 284 (345)
Q Consensus 268 G~S~ii~p~G~vl~~~~ 284 (345)
|...+++|+|++++-..
T Consensus 27 g~~aa~~pdG~lvAL~~ 43 (56)
T PF09142_consen 27 GPVAAFAPDGRLVALLE 43 (56)
T ss_dssp S-EEEE-TTS-EEEEEE
T ss_pred ceEEEECCCCcEEEEEE
Confidence 44889999999998774
No 140
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=20.02 E-value=4.1e+02 Score=24.42 Aligned_cols=23 Identities=13% Similarity=0.016 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEccC
Q 019166 43 LGKAERLLAEAAGYGSQLVVFPE 65 (345)
Q Consensus 43 ~~~i~~~i~~A~~~gadliVfPE 65 (345)
...+.+.++.|.++++|+|...=
T Consensus 76 ~~~i~~ai~~a~~~g~~Vin~S~ 98 (275)
T cd05562 76 ELDFAAAIRALAAAGADIIVDDI 98 (275)
T ss_pred HHHHHHHHHHHHHcCCCEEEecc
Confidence 56778888899999999998753
Done!