Query 019166
Match_columns 345
No_of_seqs 159 out of 1500
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 11:55:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019166.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019166hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p8k_A Hydrolase, carbon-nitro 100.0 7E-55 2.4E-59 405.1 26.4 258 20-320 16-281 (281)
2 3ivz_A Nitrilase; alpha-beta s 100.0 6.9E-55 2.3E-59 401.1 23.9 257 25-321 2-262 (262)
3 3hkx_A Amidase; alpha-beta-BET 100.0 1.3E-54 4.3E-59 403.8 17.0 261 20-322 16-282 (283)
4 2w1v_A Nitrilase-2, nitrilase 100.0 4.2E-52 1.4E-56 385.3 28.5 259 23-324 2-274 (276)
5 1f89_A 32.5 kDa protein YLR351 100.0 4.7E-52 1.6E-56 387.7 27.7 261 20-322 6-288 (291)
6 2e11_A Hydrolase; dimethylarse 100.0 3.7E-52 1.3E-56 383.5 19.8 253 24-321 3-266 (266)
7 1uf5_A N-carbamyl-D-amino acid 100.0 4.9E-51 1.7E-55 382.6 21.5 268 23-324 2-302 (303)
8 2vhh_A CG3027-PA; hydrolase; 2 100.0 2.2E-50 7.5E-55 392.5 21.5 290 21-331 69-378 (405)
9 1ems_A Nitfhit, NIT-fragIle hi 100.0 3.9E-49 1.3E-53 388.3 21.8 265 20-326 10-292 (440)
10 2dyu_A Formamidase; AMIF, CEK, 100.0 9.1E-48 3.1E-52 365.6 20.7 248 24-311 13-274 (334)
11 2uxy_A Aliphatic amidase; nitr 100.0 4.9E-47 1.7E-51 361.4 25.2 254 23-321 11-279 (341)
12 4f4h_A Glutamine dependent NAD 100.0 8.4E-44 2.9E-48 358.8 21.7 235 24-298 6-266 (565)
13 3n05_A NH(3)-dependent NAD(+) 100.0 4.5E-44 1.5E-48 363.6 19.4 238 21-301 1-264 (590)
14 3ilv_A Glutamine-dependent NAD 100.0 3.1E-43 1.1E-47 359.5 21.4 245 23-308 4-276 (634)
15 3sdb_A Glutamine-dependent NAD 100.0 1.8E-41 6.3E-46 348.2 21.0 254 21-312 9-292 (680)
16 3hkx_A Amidase; alpha-beta-BET 79.8 3.9 0.00013 36.5 7.0 70 49-149 173-244 (283)
17 3p8k_A Hydrolase, carbon-nitro 75.5 4.8 0.00016 35.9 6.2 41 109-149 203-245 (281)
18 2uxy_A Aliphatic amidase; nitr 70.9 8.7 0.0003 35.3 6.9 70 49-149 174-245 (341)
19 3ivz_A Nitrilase; alpha-beta s 69.6 8.6 0.0003 33.6 6.4 66 50-149 155-222 (262)
20 2dyu_A Formamidase; AMIF, CEK, 68.2 10 0.00034 34.8 6.7 69 49-148 174-244 (334)
21 1k77_A EC1530, hypothetical pr 66.1 56 0.0019 27.7 11.0 63 39-123 80-142 (260)
22 3obe_A Sugar phosphate isomera 66.0 36 0.0012 30.3 10.0 74 25-123 90-168 (305)
23 3ngf_A AP endonuclease, family 64.4 58 0.002 28.0 10.9 62 39-123 88-149 (269)
24 4f4h_A Glutamine dependent NAD 61.6 19 0.00066 35.6 7.7 72 49-149 177-250 (565)
25 2e11_A Hydrolase; dimethylarse 56.9 26 0.00087 30.5 7.0 42 108-149 185-229 (266)
26 4fva_A 5'-tyrosyl-DNA phosphod 56.8 10 0.00036 31.9 4.3 40 24-66 13-53 (256)
27 3dx5_A Uncharacterized protein 55.4 65 0.0022 27.8 9.6 77 25-123 62-141 (286)
28 3cqj_A L-ribulose-5-phosphate 55.3 43 0.0015 29.2 8.4 62 40-123 104-165 (295)
29 3u0h_A Xylose isomerase domain 53.1 38 0.0013 29.1 7.6 76 25-123 61-140 (281)
30 3n05_A NH(3)-dependent NAD(+) 52.1 39 0.0013 33.5 8.1 72 49-149 172-245 (590)
31 3l23_A Sugar phosphate isomera 51.1 1E+02 0.0035 27.1 10.2 59 40-123 104-164 (303)
32 1f89_A 32.5 kDa protein YLR351 51.1 10 0.00034 33.7 3.4 42 108-149 206-250 (291)
33 2j6v_A UV endonuclease, UVDE; 49.5 89 0.003 27.9 9.5 82 24-125 22-123 (301)
34 1i60_A IOLI protein; beta barr 48.1 29 0.001 29.8 5.9 76 25-123 60-141 (278)
35 2w1v_A Nitrilase-2, nitrilase 47.5 12 0.00042 32.9 3.3 42 108-149 190-234 (276)
36 1ems_A Nitfhit, NIT-fragIle hi 45.8 21 0.00073 33.7 5.0 69 194-281 38-123 (440)
37 3qc0_A Sugar isomerase; TIM ba 43.3 67 0.0023 27.4 7.5 63 39-123 78-141 (275)
38 3cny_A Inositol catabolism pro 42.5 1.1E+02 0.0037 26.4 8.9 27 39-65 85-111 (301)
39 3kws_A Putative sugar isomeras 40.8 1.1E+02 0.0039 26.3 8.7 65 40-123 100-164 (287)
40 3bdk_A D-mannonate dehydratase 40.3 1.2E+02 0.0041 28.3 9.1 43 24-66 77-126 (386)
41 1uf5_A N-carbamyl-D-amino acid 40.2 1.1E+02 0.0038 26.8 8.6 41 109-149 218-260 (303)
42 2hk0_A D-psicose 3-epimerase; 36.2 1.6E+02 0.0054 25.7 9.0 66 40-123 103-169 (309)
43 4f1h_A Tyrosyl-DNA phosphodies 36.1 28 0.00094 28.6 3.6 41 23-66 2-43 (250)
44 1vyb_A ORF2 contains A reverse 35.6 42 0.0014 27.7 4.8 41 24-69 7-47 (238)
45 1vli_A Spore coat polysacchari 35.1 47 0.0016 31.1 5.3 81 38-126 38-122 (385)
46 2vhh_A CG3027-PA; hydrolase; 2 34.2 34 0.0012 32.2 4.2 17 52-68 245-261 (405)
47 3tva_A Xylose isomerase domain 33.8 1.7E+02 0.0057 25.1 8.7 60 39-123 97-157 (290)
48 4eo3_A Bacterioferritin comigr 32.8 47 0.0016 30.1 4.8 26 131-156 99-124 (322)
49 3nvt_A 3-deoxy-D-arabino-heptu 32.5 99 0.0034 28.9 7.1 59 42-126 154-214 (385)
50 4gz1_A Tyrosyl-DNA phosphodies 32.3 46 0.0016 27.6 4.5 41 23-66 8-49 (256)
51 2q02_A Putative cytoplasmic pr 31.5 1.3E+02 0.0044 25.5 7.4 39 25-63 65-104 (272)
52 3ayv_A Putative uncharacterize 27.8 1.4E+02 0.0048 25.1 6.9 25 40-64 72-96 (254)
53 2qw5_A Xylose isomerase-like T 27.8 1.6E+02 0.0055 26.0 7.6 25 40-64 105-129 (335)
54 3p6l_A Sugar phosphate isomera 26.7 93 0.0032 26.4 5.5 35 25-64 77-111 (262)
55 3g12_A Putative lactoylglutath 26.5 1.2E+02 0.0042 22.5 5.7 43 107-152 77-120 (128)
56 3me7_A Putative uncharacterize 26.4 51 0.0017 26.3 3.5 43 108-155 104-148 (170)
57 3mpr_A Putative endonuclease/e 26.4 1.2E+02 0.0043 26.2 6.5 20 47-66 33-52 (298)
58 3qxb_A Putative xylose isomera 24.7 85 0.0029 27.7 5.1 26 40-65 110-135 (316)
59 3teb_A Endonuclease/exonucleas 23.8 56 0.0019 27.5 3.5 43 23-68 2-45 (266)
60 3lmz_A Putative sugar isomeras 23.7 87 0.003 26.6 4.8 57 25-123 75-131 (257)
61 3vni_A Xylose isomerase domain 23.5 2.8E+02 0.0095 23.7 8.2 66 40-123 84-150 (294)
62 3rjt_A Lipolytic protein G-D-S 23.3 2E+02 0.0068 22.9 6.8 25 39-63 112-136 (216)
63 2v2f_A Penicillin binding prot 23.1 39 0.0013 18.2 1.5 16 269-284 6-21 (26)
64 3g8r_A Probable spore coat pol 22.5 55 0.0019 30.2 3.3 76 38-126 15-99 (350)
65 1vr6_A Phospho-2-dehydro-3-deo 21.9 1.5E+02 0.0053 27.2 6.2 58 41-126 117-178 (350)
66 2gx8_A NIF3-related protein; s 21.8 98 0.0034 29.1 4.9 53 182-235 66-126 (397)
67 1xla_A D-xylose isomerase; iso 21.0 1.9E+02 0.0065 26.6 6.8 24 40-63 112-135 (394)
68 2wqp_A Polysialic acid capsule 21.0 95 0.0032 28.6 4.5 80 38-126 29-112 (349)
69 3lkv_A Uncharacterized conserv 20.7 50 0.0017 29.2 2.6 43 20-62 4-74 (302)
70 1zco_A 2-dehydro-3-deoxyphosph 20.5 1.8E+02 0.0063 25.3 6.2 57 42-126 35-95 (262)
71 4gew_A 5'-tyrosyl-DNA phosphod 20.3 94 0.0032 28.4 4.5 42 22-66 117-159 (362)
72 3sk2_A EHPR; antibiotic resist 20.2 2.6E+02 0.0088 20.4 7.0 44 105-151 84-130 (132)
No 1
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=100.00 E-value=7e-55 Score=405.14 Aligned_cols=258 Identities=19% Similarity=0.313 Sum_probs=234.5
Q ss_pred CCCcceEEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcc
Q 019166 20 SSAPTVRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASA 99 (345)
Q Consensus 20 ~~~~~~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 99 (345)
...++||||++|+++.++|++.|++++.+++++|+++|+|||||||++++||. +.+ +.+.+
T Consensus 16 ~~~~~~kva~~Q~~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~l~gy~-------------~~~------~~~~a 76 (281)
T 3p8k_A 16 PRGSHMKVQIYQLPIVFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNGYD-------------LEH------LNEKA 76 (281)
T ss_dssp CTTSEEEEEEEECCCCTTCHHHHHHHHHHHHHHHCCTTCCEEECCSSTTTTTC-------------GGG------HHHHS
T ss_pred ccCCCcEEEEEeccCCcCCHHHHHHHHHHHHHHHHhCCCcEEEcCCCccCCCC-------------hhH------HHHhh
Confidence 45568999999999988999999999999999999999999999999999998 222 23445
Q ss_pred cCCCCHHHHHHHHHHHhcCeEEEEeeE-EeeCCeeEEEEEEECCCCceEeeeecCCCCc--cccceeccCCCCCC-CeEE
Q 019166 100 IDVPGPEVERLAAMAGKYKVYLVMGVI-ERDGYTLYCTVLFFDSQGHFLGKHRKIMPTA--LERIIWGFGDGSTI-PVFE 175 (345)
Q Consensus 100 ~~~~~~~l~~l~~~a~~~~i~iv~G~~-~~~~~~~yNt~~vi~p~G~ii~~y~K~~l~~--~E~~~f~~~~G~~~-~vf~ 175 (345)
+..+++.++.++++|++++++|++|++ +++++++||++++++|+|++++.|+|+||++ .|..+|. +|+.. .+|+
T Consensus 77 ~~~~~~~~~~l~~la~~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~f~E~~~f~--~G~~~~~v~~ 154 (281)
T 3p8k_A 77 DNNLGQSFSFIKHLAEKYKVDIVAGSVSNIRNNQIFNTAFSVNKSGQLINEYDKVHLVPMLREHEFLT--AGEYVAEPFQ 154 (281)
T ss_dssp EETTHHHHHHHHHHHHHHTCEEEEEEEEEEETTEEEEEEEEECTTSCEEEEEECSCCCTTTTGGGTCC--CCSSCCCCEE
T ss_pred hccCcHHHHHHHHHHhhCCeEEEEeeeEEccCCcEEEEEEEEcCCCeEEEEEeeEECCCCcCccccCc--CCCCCceeEE
Confidence 556678999999999999999999985 6678899999999999999999999999987 7998887 56676 8999
Q ss_pred c-CCCcEEEEeecCCCchHHHHHHHHCCCeEEEEcCCCC---hhhHhhhhhheeeecCeEEEEeCcccccCCCCCCCCCc
Q 019166 176 T-PIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADS---REVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYE 251 (345)
Q Consensus 176 ~-~~~rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~---~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~ 251 (345)
+ +++|+|++||||++|||+.|.++.+|||+|++|++|+ ..+|+.++++||+||++||++||++|.
T Consensus 155 ~~~~~~ig~~IC~D~~fpe~~r~~~~~Gadli~~psa~~~~~~~~~~~~~~arA~en~~~vv~~n~~G~----------- 223 (281)
T 3p8k_A 155 LSDGTYVTQLICYDLRFPELLRYPARSGAKIAFYVAQWPMSRLQHWHSLLKARAIENNMFVIGTNSTGF----------- 223 (281)
T ss_dssp CTTCCEEEEEEGGGGGCTHHHHHHHHTTCCEEEEEECCBGGGHHHHHHHHHHHHHHHTSEEEEEECEEE-----------
T ss_pred eCCCcEEEEEEecCCCCcHHHHHHHHCCCCEEEECCCCCCccHHHHHHHHHHHHHHcCCEEEEEccCcC-----------
Confidence 9 9999999999999999999999999999999999986 468999999999999999999999998
Q ss_pred cCCCcCCCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcCCCCCCCCCcccee
Q 019166 252 FSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLS 320 (345)
Q Consensus 252 ~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~~~~~rr~~ly~ 320 (345)
.++..|+|+|+|++|+|+++++ +.+++++++++||++.+++.|..+|++. +||||+|+
T Consensus 224 ---------~~~~~~~G~S~ii~p~G~vl~~-~~~~e~~l~~~id~~~~~~~R~~~p~~~-~rr~~lY~ 281 (281)
T 3p8k_A 224 ---------DGNTEYAGHSIVINPNGDLVGE-LNESADILTVDLNLNEVEQQRENIPVFK-SIKLDLYK 281 (281)
T ss_dssp ---------CSSCEEECCCEEECTTSCEEEE-CCSSCEEEEEEEETHHHHHHHHHSCGGG-TCCTTTCC
T ss_pred ---------CCCcEEeeeEEEECCCCCEEEe-cCCCCeEEEEEEcHHHHHHHHHhCcchh-hcChhhcC
Confidence 4567899999999999999999 6689999999999999999999999876 79999995
No 2
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=100.00 E-value=6.9e-55 Score=401.10 Aligned_cols=257 Identities=28% Similarity=0.399 Sum_probs=233.8
Q ss_pred eEEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccC-CC
Q 019166 25 VRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAID-VP 103 (345)
Q Consensus 25 ~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~ 103 (345)
||||++|+++.++|.+.|++++.+++++|+++|+|||||||++++||.. .+... +.+.++. .+
T Consensus 2 ~rva~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~gy~~-------------~~~~~---~~~~a~~~~~ 65 (262)
T 3ivz_A 2 VKVAYVQMNPQILEPDKNYSKAEKLIKEASKQGAQLVVLPELFDTGYNF-------------ETREE---VFEIAQKIPE 65 (262)
T ss_dssp CEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCC-------------SCHHH---HHHHCBCTTT
T ss_pred eEEEEEeccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEeCCCcccCCCC-------------CCHHH---HHHhcCccCC
Confidence 8999999999889999999999999999999999999999999999983 33322 3344443 46
Q ss_pred CHHHHHHHHHHHhcCeEEEEeeEEeeCCeeEEEEEEECCCCceEeeeecCCCCccccceeccCCCC-CCCeEEcCCCcEE
Q 019166 104 GPEVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTALERIIWGFGDGS-TIPVFETPIGKIG 182 (345)
Q Consensus 104 ~~~l~~l~~~a~~~~i~iv~G~~~~~~~~~yNt~~vi~p~G~ii~~y~K~~l~~~E~~~f~~~~G~-~~~vf~~~~~rig 182 (345)
++.++.++++|++++++|++|.++++++++||++++++|+| +++.|+|+||+..|..+|.+ |+ .+.+|+++++|+|
T Consensus 66 ~~~~~~l~~~a~~~~~~iv~G~~~~~~~~~yNs~~~i~~~G-~~~~y~K~hL~~~E~~~f~~--G~~~~~v~~~~~~~ig 142 (262)
T 3ivz_A 66 GETTTFLMDVARDTGVYIVAGTAEKDGDVLYNSAVVVGPRG-FIGKYRKIHLFYREKFFFEP--GDLGFRVFDLGFMKVG 142 (262)
T ss_dssp SHHHHHHHHHHHHHCCEEEEEEEEEETTEEEEEEEEEETTE-EEEEEECSSCCGGGGGTCBC--CCSCSCEEECSSCEEE
T ss_pred CHHHHHHHHHHHHcCcEEEEeEEEeeCCcEEEEEEEEcCCe-eEEEEeecccCCchhceEeC--CCCCceEEEECCEEEE
Confidence 78999999999999999999999999999999999999999 99999999999999999874 55 6899999999999
Q ss_pred EEeecCCCchHHHHHHHHCCCeEEEEcCCCChhhHhhhhhheeeecCeEEEEeCcccccCCCCCCCCCccCCCcCCCCCC
Q 019166 183 AAICWENRMPLLRTAMYAKGIEIYCAPTADSREVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFSGTEQDLTPD 262 (345)
Q Consensus 183 v~IC~D~~fpe~~r~~~~~ga~li~~ps~~~~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~~~~~~~~~~~~ 262 (345)
++||||++|||+.+.++.+|||+|++|++|+..+|..++++||+||++||++||++|. .+
T Consensus 143 ~~IC~D~~fpe~~r~~~~~ga~li~~ps~~~~~~~~~~~~~rA~en~~~vv~~n~~G~--------------------~~ 202 (262)
T 3ivz_A 143 VMICFDWFFPESARTLALKGADVIAHPANLVMPYAPRAMPIRALENKVYTVTADRVGE--------------------ER 202 (262)
T ss_dssp ECCGGGGGSHHHHHHHHHTTCSEEEEEECCCSSCHHHHHHHHHHHHTCEEEEEECCSE--------------------ET
T ss_pred EEEecCCCchHHHHHHHHCCCCEEEEcCCCCchHHHHHHHHHHHhcCcEEEEECCCCc--------------------CC
Confidence 9999999999999999999999999999998779999999999999999999999998 34
Q ss_pred CccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhc--CCCCCCCCCccceee
Q 019166 263 SIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFD--FDVVGHYSRPEVLSL 321 (345)
Q Consensus 263 ~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~--~~~~~~~rr~~ly~~ 321 (345)
+..+.|+|+|++|+|+++++++.+++++++++||++.+++.|.. +|++. +||||+|+.
T Consensus 203 ~~~~~G~S~ii~p~G~il~~~~~~~~~~~~~~id~~~~~~~R~~~~~p~l~-~rr~~lY~~ 262 (262)
T 3ivz_A 203 GLKFIGKSLIASPKAEVLSMASETEEEVGVAEIDLSLVRNKRINDLNDIFK-DRREEYYFR 262 (262)
T ss_dssp TEECCCCCEEECTTSCEEEECCSSCCEEEEEECCHHHHHCCEEETTEEHHH-HCCGGGSCC
T ss_pred CceEeeeEEEECCCCCEeecCCCCCceEEEEEEcHHHHHHHhhcccCchhh-hcCHhhhCC
Confidence 66899999999999999999988888899999999999999987 77765 799999963
No 3
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=100.00 E-value=1.3e-54 Score=403.80 Aligned_cols=261 Identities=22% Similarity=0.248 Sum_probs=223.5
Q ss_pred CCCcceEEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcc
Q 019166 20 SSAPTVRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASA 99 (345)
Q Consensus 20 ~~~~~~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 99 (345)
.+.++||||++|+++..+|++.|++++.+++++|+++|+|||||||++++||. +.+ +. .+.+
T Consensus 16 ~~~~~~rva~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l~gy~-------------~~d---~~--~~~a 77 (283)
T 3hkx_A 16 IRGSHMRIALMQHTARPLDPQHNLDLIDDAAARASEQGAQLLLTPELFGFGYV-------------PSQ---IC--AQVS 77 (283)
T ss_dssp CTTEEEEEEEEEBCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTGGGCSC-------------HHH---HH--HHCC
T ss_pred ecCCccEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCC-------------hHH---HH--HHhc
Confidence 45567999999999998899999999999999999999999999999999998 221 11 0223
Q ss_pred cCCCCHHHHHHHHHHHhcCeEEEEeeEEeeC-CeeEEEEEEECCCCceEeeeecCCCCcc-ccceeccCCCCC-CCeEEc
Q 019166 100 IDVPGPEVERLAAMAGKYKVYLVMGVIERDG-YTLYCTVLFFDSQGHFLGKHRKIMPTAL-ERIIWGFGDGST-IPVFET 176 (345)
Q Consensus 100 ~~~~~~~l~~l~~~a~~~~i~iv~G~~~~~~-~~~yNt~~vi~p~G~ii~~y~K~~l~~~-E~~~f~~~~G~~-~~vf~~ 176 (345)
+...+++++.++++|++++++|++|++++.+ +++||++++++|+|++++.|+|+||+.. |..+|. +|+. +.+|++
T Consensus 78 ~~~~~~~~~~l~~~a~~~~i~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~E~~~f~--~G~~~~~v~~~ 155 (283)
T 3hkx_A 78 AEQVDAARSRLRGIARDRGIALVWSLPGPEGPEQRGITAELADEHGEVLASYQKVQLYGPEEKAAFV--PGEQPPPVLSW 155 (283)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEECCBCSSCTTTCCBEEEEECTTSCEEEEEECSSCCHHHHHHHSC--CCCSCCCEEEE
T ss_pred cccCCHHHHHHHHHHHHhCCEEEEEEEEEcCCCCEEEEEEEEcCCCcEEEEEccccCCCcCchhhcc--CCCCCceEEEE
Confidence 3334678999999999999999999998765 7999999999999999999999999886 888887 4555 679999
Q ss_pred CCCcEEEEeecCCCchHHHHHHHHCCCeEEEEcCCCC---hhhHhhhhhheeeecCeEEEEeCcccccCCCCCCCCCccC
Q 019166 177 PIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADS---REVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEFS 253 (345)
Q Consensus 177 ~~~rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~---~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~~~ 253 (345)
+++|||++||||++|||+.|.++.+|||+|++|++|+ ..+|..++++||+||++||++||++|.
T Consensus 156 ~~~~ig~~IC~D~~fpe~~r~l~~~Ga~li~~ps~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~G~------------- 222 (283)
T 3hkx_A 156 GGRQLSLLVCYDVEFPEMVRAAAARGAQLVLVPTALAGDETSVPGILLPARAVENGITLAYANHCGP------------- 222 (283)
T ss_dssp TTEEEEECCGGGGGSHHHHHHHHHTTCSEEEEECCCBSCCTHHHHTHHHHHHHHHTCEEEEECBEEE-------------
T ss_pred CCEEEEEEEecCcCCHHHHHHHHHCCCCEEEECCCCCCcccHHHHHHHHHHHHHhCCEEEEEccccC-------------
Confidence 9999999999999999999999999999999999985 468999999999999999999999998
Q ss_pred CCcCCCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcCCCCCCCCCccceeee
Q 019166 254 GTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLSLV 322 (345)
Q Consensus 254 ~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~~~~~rr~~ly~~~ 322 (345)
.++..+.|+|+|++|+|+++++++ +++++++++||++.+++.|..+|++. +||||+|+.+
T Consensus 223 -------~~~~~~~G~S~ii~p~G~vl~~~~-~~e~~l~a~id~~~~~~~R~~~~~~~-~rr~~ly~~l 282 (283)
T 3hkx_A 223 -------EGGLVFDGGSVVVGPAGQPLGELG-VEPGLLVVDLPDQSQDAGSDSADYLQ-DRRAELHRNW 282 (283)
T ss_dssp -------ETTEEEECCCEEECTTSCEEEECC-SSCEEEEEEEEC----------CHHH-HSCHHHHHHH
T ss_pred -------CCCeEEeeEEEEECCCCCEEEecC-CCCeEEEEEECHHHHHHHHHhCChhH-hcCHhhhhhc
Confidence 456789999999999999999998 89999999999999999999999886 6999999854
No 4
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=100.00 E-value=4.2e-52 Score=385.25 Aligned_cols=259 Identities=26% Similarity=0.418 Sum_probs=229.2
Q ss_pred cceEEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCC
Q 019166 23 PTVRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDV 102 (345)
Q Consensus 23 ~~~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 102 (345)
++||||++|+++. .|.+.|++++.+++++|+++++|||||||++++||.. .+ +.+.++..
T Consensus 2 ~~~~va~vQ~~~~-~d~~~n~~~~~~~i~~a~~~gadlvv~PE~~~~gy~~-------------~~------~~~~~~~~ 61 (276)
T 2w1v_A 2 STFRLALIQLQVS-SIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGT-------------TY------FPDYAEKI 61 (276)
T ss_dssp CEEEEEEEECCCC-SCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCCST-------------TT------HHHHCBCS
T ss_pred CccEEEEEecccc-CCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCCH-------------HH------HHHHhccC
Confidence 3699999999975 8999999999999999999999999999999999972 22 12234456
Q ss_pred CCHHHHHHHHHHHhcCeEEEEee-EEeeCCeeEEEEEEECCCCceEeeeecCCCCc---------cccceeccCCCCCCC
Q 019166 103 PGPEVERLAAMAGKYKVYLVMGV-IERDGYTLYCTVLFFDSQGHFLGKHRKIMPTA---------LERIIWGFGDGSTIP 172 (345)
Q Consensus 103 ~~~~l~~l~~~a~~~~i~iv~G~-~~~~~~~~yNt~~vi~p~G~ii~~y~K~~l~~---------~E~~~f~~~~G~~~~ 172 (345)
+++.++.++++|++++++|++|+ .+++++++||++++++|+|++++.|+|+||+. .|..+|. +|+.+.
T Consensus 62 ~~~~~~~l~~~a~~~~~~iv~G~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~vP~~e~~~E~~~f~--~G~~~~ 139 (276)
T 2w1v_A 62 PGESTQKLSEVAKESSIYLIGGSIPEEDAGKLYNTCSVFGPDGSLLVKHRKIHLFDIDVPGKITFQESKTLS--PGDSFS 139 (276)
T ss_dssp SSHHHHHHHHHHHHHTSEEECCCEEEEETTEEEEEEEEECTTSCEEEEEECSSCCEEEETTTEEEEGGGTCC--CCCCCC
T ss_pred CCHHHHHHHHHHHHcCeEEEecceeecCCCcEEEEEEEECCCCcEEEEEecccccCcccCcccccccccccc--CCCCce
Confidence 68899999999999999999995 45568899999999999999999999999953 3777776 566789
Q ss_pred eEEcCCCcEEEEeecCCCchHHHHHHHHCCCeEEEEcCCCC----hhhHhhhhhheeeecCeEEEEeCcccccCCCCCCC
Q 019166 173 VFETPIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADS----REVWQASMTHIALEGGCFVLSANQFCRRKDYPPPP 248 (345)
Q Consensus 173 vf~~~~~rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~----~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~ 248 (345)
+|+++++|+|++||||++|||+.|.++.+|||+|++|++|+ ..+|+.++++||+||++||++||++|.+
T Consensus 140 v~~~~~~~ig~~ICyD~~fpe~~r~~~~~ga~ll~~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~~G~~------- 212 (276)
T 2w1v_A 140 TFDTPYCKVGLGICYDMRFAELAQIYAQRGCQLLVYPGAFNLTTGPAHWELLQRARAVDNQVYVATASPARDD------- 212 (276)
T ss_dssp EEECSSCEEEECCGGGGGCHHHHHHHHHTTEEEEEEECCCCTTHHHHHHHHHHHHHHHHHTCEEEEECCCCCT-------
T ss_pred eEEeCCceEEEEEEeccccHHHHHHHHHcCCCEEEECCcCCCcCCHHHHHHHHHHHHHHcCcEEEEecccccC-------
Confidence 99999999999999999999999999999999999999985 3689999999999999999999999882
Q ss_pred CCccCCCcCCCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcCCCCCCCCCccceeeeee
Q 019166 249 EYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLSLVVR 324 (345)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~~~~~rr~~ly~~~~~ 324 (345)
.++..+.|+|+|++|+|+++++++. ++++++++||++.+++.|..+|++. +||||+|++..+
T Consensus 213 ------------~~~~~~~G~S~ii~p~G~v~~~~~~-~e~~l~~~id~~~~~~~R~~~~~~~-~~r~~~y~~~~~ 274 (276)
T 2w1v_A 213 ------------KASYVAWGHSTVVDPWGQVLTKAGT-EETILYSDIDLKKLAEIRQQIPILK-QKRADLYTVESK 274 (276)
T ss_dssp ------------TSSSCCCCCCEEECTTSCEEEECCS-SSEEEEEEEEHHHHHHHHHHSCGGG-SCCTTTEEEEEC
T ss_pred ------------CCCceeeeEeEEECCCCCEeEEcCC-CCeEEEEEEcHHHHHHHHHhCChhH-hCCHHHhhcccc
Confidence 3356899999999999999999985 9999999999999999999999887 589999997643
No 5
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1
Probab=100.00 E-value=4.7e-52 Score=387.67 Aligned_cols=261 Identities=26% Similarity=0.380 Sum_probs=224.0
Q ss_pred CCCcceEEEEEeccCCCCChHHHHHHHHHHHHHH--HhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHh
Q 019166 20 SSAPTVRATVVQASTIFYDTPATLGKAERLLAEA--AGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHA 97 (345)
Q Consensus 20 ~~~~~~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A--~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (345)
+|..+||||++|+++...|++.|++++.+++++| +++|+|||||||++++||. + ..+.+
T Consensus 6 ~m~~~~~va~vQ~~~~~~d~~~n~~~~~~~i~~a~~~~~gadlvv~PE~~~~g~~-------------~------~~~~~ 66 (291)
T 1f89_A 6 ILSQKIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYS-------------T------DQFRK 66 (291)
T ss_dssp SBSSCEEEEEEECCCCCSCHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTSCSC-------------H------HHHHH
T ss_pred cccccceEEEEeccCCcCCHHHHHHHHHHHHHHHhhccCCCeEEEcCCCcccCCC-------------h------HHHHH
Confidence 4566799999999966689999999999999999 8899999999999999986 1 11223
Q ss_pred cccCC--C--CHHHHHHHHHHHhcCeEEEEee-EEeeC--CeeEEEEEEECCCCceEeeeecCCCCc---------cccc
Q 019166 98 SAIDV--P--GPEVERLAAMAGKYKVYLVMGV-IERDG--YTLYCTVLFFDSQGHFLGKHRKIMPTA---------LERI 161 (345)
Q Consensus 98 ~a~~~--~--~~~l~~l~~~a~~~~i~iv~G~-~~~~~--~~~yNt~~vi~p~G~ii~~y~K~~l~~---------~E~~ 161 (345)
.++.. . ++.++.++++|++++++|++|+ .++++ +++||++++++|+|++++.|+|+||+. .|..
T Consensus 67 ~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hLf~e~~P~~~~~~E~~ 146 (291)
T 1f89_A 67 YSEVINPKEPSTSVQFLSNLANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDKHRKVHLFDVDIPNGISFHESE 146 (291)
T ss_dssp HTTBCCSSSCCHHHHHHHHHHHHSSCEEECCCEEEECTTTCCEEEEEEEECTTSCEEEEEECCCCC----------HHHH
T ss_pred HhhhhccCCCChHHHHHHHHHHHcCcEEEeceeecccCCCCceEEEEEEECCCCcEEeEEeeeccCCCccCccccccccc
Confidence 33444 3 7899999999999999999996 46655 789999999999999999999999964 4777
Q ss_pred eeccCCCCCCCeEEcCCCcEEEEeecCCCchHHHHHHHHCCCeEEEEcCCCC----hhhHhhhhhheeeecCeEEEEeCc
Q 019166 162 IWGFGDGSTIPVFETPIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADS----REVWQASMTHIALEGGCFVLSANQ 237 (345)
Q Consensus 162 ~f~~~~G~~~~vf~~~~~rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~----~~~~~~~~~~rA~en~~~vv~~n~ 237 (345)
+|. +|+.+.+|+++++|+|++||||++|||+.|.++.+|||+|++|++|+ ..+|..++++||+||++||++||+
T Consensus 147 ~f~--~G~~~~v~~~~~~~ig~~ICyD~~fpe~~r~l~~~Ga~ll~~ps~~~~~~~~~~~~~~~~~rA~en~~~vv~~n~ 224 (291)
T 1f89_A 147 TLS--PGEKSTTIDTKYGKFGVGICYDMRFPELAMLSARKGAFAMIYPSAFNTVTGPLHWHLLARSRAVDNQVYVMLCSP 224 (291)
T ss_dssp SCC--CCCCCEEEEETTEEEEECCGGGGGCHHHHHHHHHTTEEEEEEECCCBTTHHHHHHHHHHHHHHHHHTSEEEEECC
T ss_pred ccc--CCCCCceEecCCeeEEEEEecccCchHHHHHHHhhCCCEEEECCcCCCCCcHHHHHHHHHHHHHHcCCEEEEecC
Confidence 776 56678899999999999999999999999999999999999999985 468999999999999999999999
Q ss_pred ccccCCCCCCCCCccCCCcCCCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcCCCCCCCCCcc
Q 019166 238 FCRRKDYPPPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPE 317 (345)
Q Consensus 238 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~~~~~rr~~ 317 (345)
+|.. .++..+.|+|+|++|+|+++++++ .++++++++||++.+++.|..+|++. +||||
T Consensus 225 ~G~~-------------------~~~~~~~G~S~ii~p~G~vl~~~~-~~e~~l~~~id~~~~~~~R~~~~~~~-~~r~~ 283 (291)
T 1f89_A 225 ARNL-------------------QSSYHAYGHSIVVDPRGKIVAEAG-EGEEIIYAELDPEVIESFRQAVPLTK-QRRFD 283 (291)
T ss_dssp CCCT-------------------TSSSCBCCCCEEECTTSCEEEECC-SSSEEEEEEECHHHHHHHHHHSCCCC-CCCC-
T ss_pred ccCC-------------------CCCCeeeeEEEEECCCCCEEEecC-CCCeEEEEEECHHHHHHHHHhCChhH-hCChh
Confidence 9961 456789999999999999999988 48999999999999999999999887 58999
Q ss_pred ceeee
Q 019166 318 VLSLV 322 (345)
Q Consensus 318 ly~~~ 322 (345)
+|..+
T Consensus 284 ~y~~~ 288 (291)
T 1f89_A 284 VYSDV 288 (291)
T ss_dssp -----
T ss_pred hhhhh
Confidence 99876
No 6
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}
Probab=100.00 E-value=3.7e-52 Score=383.50 Aligned_cols=253 Identities=20% Similarity=0.285 Sum_probs=226.1
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCC
Q 019166 24 TVRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVP 103 (345)
Q Consensus 24 ~~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 103 (345)
+||||++|+++.+.|.+.|++++.+++++| ++|+|||||||++++||.. .. .+.++...
T Consensus 3 ~~kva~~Q~~~~~~d~~~n~~~~~~~i~~a-~~gadlvv~PE~~~~gy~~-------------~~-------~~~a~~~~ 61 (266)
T 2e11_A 3 DLRISLVQGSTRWHDPAGNRDYYGALLEPL-AGQSDLVILPETFTSGFSN-------------EA-------IDKAEDMD 61 (266)
T ss_dssp CEEEEEEECCCCTTCHHHHHHHHHHHHGGG-TTTCSEEECCTTTTTCSCS-------------GG-------GGGCEETT
T ss_pred ccEEEEEeCCCCcCCHHHHHHHHHHHHHHh-cCCCCEEECCCCccccCCh-------------hH-------HHhhccCC
Confidence 599999999999899999999999999999 8899999999999999961 11 22344567
Q ss_pred CHHHHHHHHHHHhcCeEEEEeeEEeeCCeeEEEEEEECCCCceEeeeecCCCCcc--ccceeccCCCCCCCeEEcCCCcE
Q 019166 104 GPEVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTAL--ERIIWGFGDGSTIPVFETPIGKI 181 (345)
Q Consensus 104 ~~~l~~l~~~a~~~~i~iv~G~~~~~~~~~yNt~~vi~p~G~ii~~y~K~~l~~~--E~~~f~~~~G~~~~vf~~~~~ri 181 (345)
++.++.++++|++++++|++|+++++++++||++++++|+|+++ .|+|+||++. |..+|. +|+.+.+|+++++|+
T Consensus 62 ~~~~~~l~~~a~~~~~~iv~G~~~~~~~~~yNs~~~i~~~G~i~-~y~K~hL~~~~~E~~~f~--~G~~~~v~~~~~~~i 138 (266)
T 2e11_A 62 GPTVAWIRTQAARLGAAITGSVQLRTEHGVFNRLLWATPDGALQ-YYDKRHLFRFGNEHLRYA--AGRERLCVEWKGWRI 138 (266)
T ss_dssp SHHHHHHHHHHHHHTSEEEEEEEEEETTEEEEEEEEECTTSCEE-EEECSSCCGGGTTTTTSB--CCCSCCCEEETTEEE
T ss_pred CHHHHHHHHHHHHhCCEEEEeeeEccCCcEEEEEEEECCCCCEE-EEeeeccCCCcChhhhcc--CCCCceEEEECCEEE
Confidence 88999999999999999999999888899999999999999999 9999999864 888887 556789999999999
Q ss_pred EEEeecCCCchHHHHHHH---HC---CCeEEEEcCCCC---hhhHhhhhhheeeecCeEEEEeCcccccCCCCCCCCCcc
Q 019166 182 GAAICWENRMPLLRTAMY---AK---GIEIYCAPTADS---REVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPEYEF 252 (345)
Q Consensus 182 gv~IC~D~~fpe~~r~~~---~~---ga~li~~ps~~~---~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~~ 252 (345)
|++||||++|||+.|.++ .+ |||+|++|++|+ ..+|+.++++||+||++||++||++|.+
T Consensus 139 g~~ICyD~~fpe~~r~~~~~~~~~~~ga~~i~~~s~w~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~----------- 207 (266)
T 2e11_A 139 NPQVCYDLRFPVFCRNRFDVERPGQLDFDLQLFVANWPSARAYAWKTLLRARAIENLCFVAAVNRVGVD----------- 207 (266)
T ss_dssp EEEEGGGGGCTTTTCCCBSSSSTTSBSCSEEEEEECCCGGGHHHHHHHHHHHHHHTTSEEEEEECEEEC-----------
T ss_pred EEEEEeccCCHHHHHHHHhhhhccCCCCcEEEEeCCCCCCchHHHHHHHHHHHHhcCcEEEEEcCCcCC-----------
Confidence 999999999999998764 44 999999999985 4589999999999999999999999982
Q ss_pred CCCcCCCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcCCCCCCCCCccceee
Q 019166 253 SGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLSL 321 (345)
Q Consensus 253 ~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~~~~~rr~~ly~~ 321 (345)
.++..+.|+|+|++|+|+++++++ +++++++++||++.++..|..+|++. +|||++|+.
T Consensus 208 --------~~~~~~~G~S~ii~p~G~v~~~~~-~~e~~l~~~id~~~~~~~R~~~~~~~-~rr~~~y~~ 266 (266)
T 2e11_A 208 --------GNQLHYAGDSAVIDFLGQPQVEIR-EQEQVVTTTISAAALAEHRARFPAML-DGDSFVLGE 266 (266)
T ss_dssp --------TTSCEEEEEEEEECTTSCEEEEEE-SSCEEEEEEECHHHHHHHHHHSCGGG-GCCCEEEC-
T ss_pred --------CCCceEeeeEEEECCCCceeeecC-CCCeEEEEEEcHHHHHHHHHhCChhh-hcChhhhcC
Confidence 334689999999999999999998 89999999999999999999999886 699999973
No 7
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Probab=100.00 E-value=4.9e-51 Score=382.64 Aligned_cols=268 Identities=23% Similarity=0.338 Sum_probs=226.9
Q ss_pred cceEEEEEeccCCC--CChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhccc
Q 019166 23 PTVRATVVQASTIF--YDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAI 100 (345)
Q Consensus 23 ~~~rIa~vQ~~~~~--~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 100 (345)
.+||||++|+++.. +|.+.|++++.+++++|+++|+|||||||++++||.....+ .+..+...+.+.++
T Consensus 2 ~~~~va~~Q~~~~~~~~d~~~n~~~~~~~i~~a~~~gadlvv~PE~~~~gy~~~~~~---------~~~~~~~~~~~~~~ 72 (303)
T 1uf5_A 2 RQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHF---------TDEAELDSFYETEM 72 (303)
T ss_dssp CEEEEEEEEBCCCCTTCCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCCGGGSCC---------CCHHHHHTTSBSSS
T ss_pred ccEEEEEEEecCcccccCHHHHHHHHHHHHHHHHhcCCCEEEeccccccCCCccccc---------cchhhhHHHHhhcC
Confidence 35999999999887 89999999999999999999999999999999999621100 01122223333322
Q ss_pred CCCCHHHHHHHHHHHhcCeEEEEeeEEee-CC---eeEEEEEEECCCCceEeeeecCCCC-c-----------cccceec
Q 019166 101 DVPGPEVERLAAMAGKYKVYLVMGVIERD-GY---TLYCTVLFFDSQGHFLGKHRKIMPT-A-----------LERIIWG 164 (345)
Q Consensus 101 ~~~~~~l~~l~~~a~~~~i~iv~G~~~~~-~~---~~yNt~~vi~p~G~ii~~y~K~~l~-~-----------~E~~~f~ 164 (345)
.++.++.++++|++++++|++|++++. ++ ++||++++++|+|++++.|+|+||+ . .|..+|.
T Consensus 73 --~~~~~~~l~~~a~~~~~~iv~G~~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~hL~~~~e~~p~~~~~~~E~~~f~ 150 (303)
T 1uf5_A 73 --PGPVVRPLFEKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFE 150 (303)
T ss_dssp --SCTTTHHHHHHHHHHTCEEEEEEEEEEEETTEEEEEEEEEEECTTSCEEEEEECCCCCSCSSCCTTCSSCCCHHHHCC
T ss_pred --CCHHHHHHHHHHHHhCeEEEEeeeEecCCCCCcceeeEEEEECCCCCEeeeEeeeecCCcccccccccccccchhhcc
Confidence 567899999999999999999998764 45 8999999999999999999999986 2 3777776
Q ss_pred cCCCC-CCCeEEcCCCcEEEEeecCCCchHHHHHHHHCCCeEEEEcCCC---C----------hhhHhhhhhheeeecCe
Q 019166 165 FGDGS-TIPVFETPIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTAD---S----------REVWQASMTHIALEGGC 230 (345)
Q Consensus 165 ~~~G~-~~~vf~~~~~rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~---~----------~~~~~~~~~~rA~en~~ 230 (345)
+|+ .+.+|+++++|+|++||||++|||+.|.++.+|||+|++|+++ + ..+|+.++++||+||++
T Consensus 151 --~G~~~~~v~~~~~~~ig~~ICyD~~fpe~~r~l~~~ga~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rA~en~~ 228 (303)
T 1uf5_A 151 --PGDLGFPVYDVDAAKMGMFIANDRRWPEAWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGA 228 (303)
T ss_dssp --CCSSCSCEEEETTEEEEECCGGGGGCHHHHHHHHHTTCSEEEEEECCBSCCTTCGGGGGGHHHHHHHHHHHHHHHHTC
T ss_pred --CCCCCCceEecCCceEEEEEecCccCHHHHHHHHHCCCCEEEEecCCccccccccCCccccHHHHHHHHHhhhhcCCc
Confidence 566 6889999999999999999999999999999999999765543 1 24678889999999999
Q ss_pred EEEEeCcccccCCCCCCCCCccCCCcCCCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhc-CCC
Q 019166 231 FVLSANQFCRRKDYPPPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFD-FDV 309 (345)
Q Consensus 231 ~vv~~n~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~-~~~ 309 (345)
||++||++|. .++..+.|+|+|++|+|+++++++.+++++++++||++.+++.|.. +|+
T Consensus 229 ~vv~~n~~G~--------------------~~~~~~~G~S~ii~p~G~vl~~~~~~~~~~l~~~id~~~~~~~R~~~~~~ 288 (303)
T 1uf5_A 229 WSAAAGKAGM--------------------EENCMLLGHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREHIFNF 288 (303)
T ss_dssp EEEEEEBCEE--------------------ETTEEECCCCEEECTTSCEEEECCSSSSEEEEEEEEGGGGHHHHTTTTCH
T ss_pred EEEEECcccc--------------------cCCccccceeEEECCCCCEeccCCCCCCcEEEEEEcHHHHHHHHhhcccc
Confidence 9999999998 3456899999999999999999987788999999999999999999 998
Q ss_pred CCCCCCccceeeeee
Q 019166 310 VGHYSRPEVLSLVVR 324 (345)
Q Consensus 310 ~~~~rr~~ly~~~~~ 324 (345)
+. +||||+|+.+++
T Consensus 289 ~~-~rr~~~y~~~~~ 302 (303)
T 1uf5_A 289 KQ-HRQPQHYGLIAE 302 (303)
T ss_dssp HH-HCCGGGCGGGGC
T ss_pred hh-ccCHHHHHHhhc
Confidence 86 599999987653
No 8
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Probab=100.00 E-value=2.2e-50 Score=392.46 Aligned_cols=290 Identities=24% Similarity=0.373 Sum_probs=227.7
Q ss_pred CCcceEEEEEeccCCC-------CChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHH
Q 019166 21 SAPTVRATVVQASTIF-------YDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFR 93 (345)
Q Consensus 21 ~~~~~rIa~vQ~~~~~-------~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~ 93 (345)
+...||||++|+++.. .+.+.|++++.+++++|+++|+|||||||++++||.+. .. +..
T Consensus 69 ~~~~~rVAlvQ~~i~~~~~~~~~~d~~~nl~~~~~li~~A~~~gadLVVfPE~~l~gy~~~-------------~~-~~~ 134 (405)
T 2vhh_A 69 KRRIVRVGAIQNSIVIPTTAPIEKQREAIWNKVKTMIKAAAEAGCNIVCTQEAWTMPFAFC-------------TR-EKF 134 (405)
T ss_dssp CCCEEEEEEEECCCCSCSSSCHHHHHHHHHHHHHHHHHHHHHTTCSEEECCTTTTSCSCC--------------------
T ss_pred CCCCCEEEEEeccccccccccccccHHHHHHHHHHHHHHHHHCCCCEEEcCCccccccccc-------------cc-chh
Confidence 4456999999999753 35789999999999999999999999999999998621 00 001
Q ss_pred HHHhcccCC-CCHHHHHHHHHHHhcCeEEEEeeEEee---CCeeEEEEEEECCCCceEeeeecCCCCc----cccceecc
Q 019166 94 KYHASAIDV-PGPEVERLAAMAGKYKVYLVMGVIERD---GYTLYCTVLFFDSQGHFLGKHRKIMPTA----LERIIWGF 165 (345)
Q Consensus 94 ~~~~~a~~~-~~~~l~~l~~~a~~~~i~iv~G~~~~~---~~~~yNt~~vi~p~G~ii~~y~K~~l~~----~E~~~f~~ 165 (345)
.+.+.++.. .+++++.|+++|++++++|++|+.+++ ++++||++++|+|+|++++.|+|+|++. .|..+|.
T Consensus 135 ~~~~~ae~~~~~~~~~~l~~lA~~~~i~Iv~G~~e~~~~~~~~~yNsa~vi~p~G~i~~~YrK~hL~~~g~f~E~~~f~- 213 (405)
T 2vhh_A 135 PWCEFAEEAENGPTTKMLAELAKAYNMVIIHSILERDMEHGETIWNTAVVISNSGRYLGKHRKNHIPRVGDFNESTYYM- 213 (405)
T ss_dssp ---CCCBCTTTSHHHHHHHHHHHHTTCEEEEEEEEEETTTTTEEEEEEEEECTTSCEEEEEECSCCCC----------C-
T ss_pred hHHHHHhhccCCHHHHHHHHHHHHCCEEEEEeceecccCCCCcEEEEEEEECCCCeEEEEEecccCCCCCCcCccccee-
Confidence 123344444 578999999999999999999999876 5789999999999999999999999864 4888887
Q ss_pred CCCC-CCCeEEcCCCcEEEEeecCCCchHHHHHHHHCCCeEEEEcCCCC----hhhHhhhhhheeeecCeEEEEeCcccc
Q 019166 166 GDGS-TIPVFETPIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADS----REVWQASMTHIALEGGCFVLSANQFCR 240 (345)
Q Consensus 166 ~~G~-~~~vf~~~~~rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~----~~~~~~~~~~rA~en~~~vv~~n~~G~ 240 (345)
+|+ .+.+|+++++|||++||||++|||++|.++.+||++|++|++|. ..+|..++++||+||++||++||++|.
T Consensus 214 -~G~~~~~vf~~~~~riG~~ICyD~~fPe~~r~la~~GAdill~psa~~~~~~~~~w~~l~raRAiEn~~~Vv~aN~vG~ 292 (405)
T 2vhh_A 214 -EGNTGHPVFETEFGKLAVNICYGRHHPQNWMMFGLNGAEIVFNPSATIGRLSEPLWSIEARNAAIANSYFTVPINRVGT 292 (405)
T ss_dssp -CCCSCCCEEEETTEEEEECCGGGGGCHHHHHHHHHTTCSEEEEEECCBCTTTHHHHHHHHHHHHHHHTSEEEEEECEEC
T ss_pred -CCCCCCeeEEECCEEEEEEEeccccChHHHHHHHHcCCCEEEEcccCCCCCCHHHHHHHHHHHHHHcCceEEEeccccc
Confidence 455 37899999999999999999999999999999999999999983 468999999999999999999999998
Q ss_pred cCCCCCCCCCccCCCcCCCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcCCCCCCCCCcccee
Q 019166 241 RKDYPPPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLS 320 (345)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~~~~~rr~~ly~ 320 (345)
+. +|.. ++ .+.+.....+...++|+|+|++|+|++++.++.+++++++++||++.+++.|..++++. +|||++|+
T Consensus 293 ~~-~~~~--~~-~~~g~~~~~~~~~f~G~S~IidP~G~vla~~~~~~e~il~aeiDl~~~~~~R~~~p~~~-~rR~~lY~ 367 (405)
T 2vhh_A 293 EQ-FPNE--YT-SGDGNKAHKEFGPFYGSSYVAAPDGSRTPSLSRDKDGLLVVELDLNLCRQVKDFWGFRM-TQRVPLYA 367 (405)
T ss_dssp CC-CC--------------------EECCCCCBCTTSCBCCCCCSSSCEEEEEEEETTHHHHHHHHHCTTT-TCCHHHHH
T ss_pred cc-cccc--cc-cccCccccccCceeccccceECCCCCEeeccCCCCCeEEEEEECHHHHHHHHHhCCchh-hcCHHHHH
Confidence 31 1100 00 00000001133578999999999999999988788999999999999999999999876 69999999
Q ss_pred eeeecCCCCce
Q 019166 321 LVVRDHPATPV 331 (345)
Q Consensus 321 ~~~~~~~~~~~ 331 (345)
.+.++....+|
T Consensus 368 ~~~~~~~~~~~ 378 (405)
T 2vhh_A 368 ESFKKASEHGF 378 (405)
T ss_dssp HHHHHHHSTTC
T ss_pred HHHHHhhcCCC
Confidence 98876555444
No 9
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=100.00 E-value=3.9e-49 Score=388.29 Aligned_cols=265 Identities=22% Similarity=0.312 Sum_probs=229.3
Q ss_pred CCCcceEEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcc
Q 019166 20 SSAPTVRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASA 99 (345)
Q Consensus 20 ~~~~~~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 99 (345)
|.+++||||++|+++. .|.+.|++++.+++++|+++|+|||||||++++||.. .+ . ....+
T Consensus 10 m~~~~~kVa~vQ~~~~-~d~~~nl~~~~~li~~A~~~gadlvv~PE~~~~~~~~-------------~~--~---~~~~a 70 (440)
T 1ems_A 10 MATGRHFIAVCQMTSD-NDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLN-------------KN--E---QIDLA 70 (440)
T ss_dssp CCCSEEEEEEECBCCC-SCHHHHHHHHHHHHHHHHHTTCSEEEECTTCSCCCSS-------------HH--H---HHHHH
T ss_pred cccCCceEEEEecCCC-CCHHHHHHHHHHHHHHHHHCCCCEEECCCcccccCcc-------------hh--H---HHHhh
Confidence 3345799999999986 7999999999999999999999999999999988751 11 1 11122
Q ss_pred cCCCCHHHHHHHHHHHhcCeEEEEeeEE---e-eCCeeEEEEEEECCCCceEeeeecCCCCc---------cccceeccC
Q 019166 100 IDVPGPEVERLAAMAGKYKVYLVMGVIE---R-DGYTLYCTVLFFDSQGHFLGKHRKIMPTA---------LERIIWGFG 166 (345)
Q Consensus 100 ~~~~~~~l~~l~~~a~~~~i~iv~G~~~---~-~~~~~yNt~~vi~p~G~ii~~y~K~~l~~---------~E~~~f~~~ 166 (345)
+..+++.++.++++|++++++|++|++. + +++++||++++++|+|++++.|+|+||+. .|..+|.
T Consensus 71 ~~~~~~~~~~l~~~A~~~~i~iv~G~~~~~e~~~~~~~yNs~~~i~~~G~i~~~yrK~hL~~~~~P~~~~~~E~~~f~-- 148 (440)
T 1ems_A 71 MATDCEYMEKYRELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLMESEFSK-- 148 (440)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEECCCCCEEEETTTEEEEGGGTCC--
T ss_pred ccCCCHHHHHHHHHHHHcCeEEEeccccccccCCCCcEEEEEEEECCCCcEEEEEeeeeecCccCCCCCccccccccc--
Confidence 2334678999999999999999999764 3 35789999999999999999999999974 4677776
Q ss_pred CCCCCCe-EEcCCCcEEEEeecCCCchHHHHHHHHCCCeEEEEcCCCC----hhhHhhhhhheeeecCeEEEEeCccccc
Q 019166 167 DGSTIPV-FETPIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADS----REVWQASMTHIALEGGCFVLSANQFCRR 241 (345)
Q Consensus 167 ~G~~~~v-f~~~~~rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~----~~~~~~~~~~rA~en~~~vv~~n~~G~~ 241 (345)
+|+...+ |+++++|+|++||||++|||+.|.++.+|||++++|++|+ ..+|..++++||+||++||++||++|.+
T Consensus 149 ~G~~~~~~~~~~~~~iG~~ICyD~~fpe~~r~l~~~Ga~il~~psa~~~~~~~~~~~~~~~arA~En~~~vv~an~~G~~ 228 (440)
T 1ems_A 149 AGTEMIPPVDTPIGRLGLSICYDVRFPELSLWNRKRGAQLLSFPSAFTLNTGLAHWETLLRARAIENQCYVVAAAQTGAH 228 (440)
T ss_dssp CCCSCCCCEEETTEEECCCCGGGGGCHHHHHHHHHTTCSEEECCBCCCHHHHHHHHHHHHHHHHHHHTCEEEECBBEEEE
T ss_pred CCCCCceeEECCCeeEEEEEeccccChHHHHHHHHcCCcEEEECCcCCCCCcHHHHHHHHHHHHHhcCcEEEEecccccC
Confidence 5667777 9999999999999999999999999999999999999985 3589999999999999999999999972
Q ss_pred CCCCCCCCCccCCCcCCCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcCCCCCCCCCccceee
Q 019166 242 KDYPPPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLSL 321 (345)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~~~~~rr~~ly~~ 321 (345)
.++..++|+|+|++|+|+++++++ .++++++++||++.++..|..+|++. +||||+|++
T Consensus 229 -------------------~~~~~~~G~S~ii~P~G~vla~~~-~~e~il~a~idl~~~~~~R~~~~~~~-~rr~~~y~~ 287 (440)
T 1ems_A 229 -------------------NPKRQSYGHSMVVDPWGAVVAQCS-ERVDMCFAEIDLSYVDTLREMQPVFS-HRRSDLYTL 287 (440)
T ss_dssp -------------------ETTEEEECCCEEECTTSCEEEECC-SSSCEEEEEEEHHHHHHHHHHSCGGG-SCCTTTCCC
T ss_pred -------------------CCCceeeeeeEEECCCCCeeccCC-CCCcEEEEEeCHHHHHHHHHhCChhh-hcChhhhhc
Confidence 234689999999999999999987 68999999999999999999999887 599999999
Q ss_pred eeecC
Q 019166 322 VVRDH 326 (345)
Q Consensus 322 ~~~~~ 326 (345)
+++++
T Consensus 288 ~~~~~ 292 (440)
T 1ems_A 288 HINEK 292 (440)
T ss_dssp CCCCC
T ss_pred ccccc
Confidence 88754
No 10
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A
Probab=100.00 E-value=9.1e-48 Score=365.55 Aligned_cols=248 Identities=23% Similarity=0.301 Sum_probs=215.1
Q ss_pred ceEEEEEeccCC----CCChHHHHHHHHHHHHHHHh--CCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHh
Q 019166 24 TVRATVVQASTI----FYDTPATLGKAERLLAEAAG--YGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHA 97 (345)
Q Consensus 24 ~~rIa~vQ~~~~----~~d~~~n~~~i~~~i~~A~~--~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (345)
.||||++|+++. +.|.+.|++++.+++++|++ .++|||||||++++||.+. +.+ +.+
T Consensus 13 ~~~Va~vQ~~i~~~~~~~d~~~nl~~~~~li~~A~~~~~gadLVVfPE~~l~G~~~~-----------~~~------~~~ 75 (334)
T 2dyu_A 13 GFLVAAIQFPVPIVNSRKDIDHNIESIIRTLHATKAGYPGVELIIFPEYSTQGLNTA-----------KWL------SEE 75 (334)
T ss_dssp CEEEEEECCBCCCCCSHHHHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTTCCCTT-----------TTT------SGG
T ss_pred ccEEEEEecCCccCCchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCCccccCCCC-----------hhH------HHH
Confidence 599999999843 45789999999999999987 7999999999999998632 111 234
Q ss_pred cccCCCCHHHHHHHHHHHhcCeEEEEeeEEee-CCe--eEEEEEEECCCCceEeeeecCCCCccccceeccCCCCCC-Ce
Q 019166 98 SAIDVPGPEVERLAAMAGKYKVYLVMGVIERD-GYT--LYCTVLFFDSQGHFLGKHRKIMPTALERIIWGFGDGSTI-PV 173 (345)
Q Consensus 98 ~a~~~~~~~l~~l~~~a~~~~i~iv~G~~~~~-~~~--~yNt~~vi~p~G~ii~~y~K~~l~~~E~~~f~~~~G~~~-~v 173 (345)
.++..+++.++.|+++|++++++|++|+++++ ++. +||++++++|+|++++.|+|+||+. |..+|. +|+.. ++
T Consensus 76 ~a~~~~~~~~~~l~~~a~~~~i~iv~G~~e~~~~~~~~~yNsa~vi~p~G~i~~~YrK~hlf~-e~~~f~--~G~~~~~v 152 (334)
T 2dyu_A 76 FLLDVPGKETELYAKACKEAKVYGVFSIMERNPDSNKNPYNTAIIIDPQGEIILKYRKLFPWN-PIEPWY--PGDLGMPV 152 (334)
T ss_dssp GCBCSSSHHHHHHHHHHHHHTCEEEEEEEECCSSTTSCCEEEEEEECTTSCEEEEEECSSCCT-TTCCCC--CCCSCCCC
T ss_pred hhccCCCHHHHHHHHHHHHhCeEEEEeeEEECCCCCceeEEEEEEECCCCCEEEEEeeccCCC-CcccCc--CCCCCcee
Confidence 45566788999999999999999999999875 344 9999999999999999999999975 455676 45554 49
Q ss_pred EEcC-CCcEEEEeecCCCchHHHHHHHHCCCeEEEEcCCCC---hhhHhhhhhheeeecCeEEEEeCcccccCCCCCCCC
Q 019166 174 FETP-IGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADS---REVWQASMTHIALEGGCFVLSANQFCRRKDYPPPPE 249 (345)
Q Consensus 174 f~~~-~~rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~---~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~ 249 (345)
|+++ +.|+|++||||++|||+.|.++.+|||+|++|++|. ..+|..++++||+||++||++||++|.
T Consensus 153 ~~~~~g~~iG~~ICyD~~fpe~~r~~~~~Gadlil~psaw~~~~~~~~~~~~~arA~En~~~vv~an~~G~--------- 223 (334)
T 2dyu_A 153 CEGPGGSKLAVCICHDGMIPELAREAAYKGCNVYIRISGYSTQVNDQWILTNRSNAWHNLMYTVSVNLAGY--------- 223 (334)
T ss_dssp EECGGGCEEEEEEGGGGGCHHHHHHHHHTTCSEEEEEESSCTTSHHHHHHHHHHHHHHHTCEEEEEECSBS---------
T ss_pred EECCCCCEEEEEEECCCCchHHHHHHHHcCCCEEEEeCCCCCCcHHHHHHHHHHHHHhCCCEEEEECCCcC---------
Confidence 9985 559999999999999999999999999999999885 468999999999999999999999998
Q ss_pred CccCCCcCCCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcCCCCC
Q 019166 250 YEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVG 311 (345)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~~~ 311 (345)
.+...+.|+|+|++|+|+++++++.+++++++++||++.+++.|..+++..
T Consensus 224 -----------~~~~~~~G~S~Iidp~G~vla~~~~~~e~il~a~idl~~~~~~R~~~~~~~ 274 (334)
T 2dyu_A 224 -----------DNVFYYFGEGQICNFDGTTLVQGHRNPWEIVTGEIYPKMADNARLSWGLEN 274 (334)
T ss_dssp -----------SSSCCCCCEEEEECTTSCEEEECCCCTTCEEEEEECHHHHHHHHHHCSTTC
T ss_pred -----------CCCeeeeeEEEEECCCCCEeeecCCCCCeEEEEEEcHHHHHHHHhhCchhh
Confidence 455689999999999999999998778999999999999999999988754
No 11
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A
Probab=100.00 E-value=4.9e-47 Score=361.42 Aligned_cols=254 Identities=24% Similarity=0.272 Sum_probs=220.5
Q ss_pred cceEEEEEeccC----CCCChHHHHHHHHHHHHHHHh--CCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHH
Q 019166 23 PTVRATVVQAST----IFYDTPATLGKAERLLAEAAG--YGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYH 96 (345)
Q Consensus 23 ~~~rIa~vQ~~~----~~~d~~~n~~~i~~~i~~A~~--~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (345)
.+||||++|+++ ..+|.+.|++++.+++++|++ .|+|||||||++++||.+. + ..+.
T Consensus 11 ~~~kValvQ~~i~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l~G~~~~-----------~------~~~~ 73 (341)
T 2uxy_A 11 DTVGVAVVNYKMPRLHTAAEVLDNARKIAEMIVGMKQGLPGMDLVVFPEYSLQGIMYD-----------P------AEMM 73 (341)
T ss_dssp TEEEEEEECCBCCBCCSHHHHHHHHHHHHHHHHHHHHHCTTEEEEECCTTTTTBCCCS-----------H------HHHH
T ss_pred CccEEEEEECCcccCCCccCHHHHHHHHHHHHHHHHhcCCCCcEEEeCCCcccccCCC-----------H------HHHH
Confidence 579999999984 346889999999999999987 7999999999999998621 1 1233
Q ss_pred hcccCCCCHHHHHHHHHHHhcCeEEEEeeE-EeeC----CeeEEEEEEECCCCceEeeeecCCCCccccceeccCCCCCC
Q 019166 97 ASAIDVPGPEVERLAAMAGKYKVYLVMGVI-ERDG----YTLYCTVLFFDSQGHFLGKHRKIMPTALERIIWGFGDGSTI 171 (345)
Q Consensus 97 ~~a~~~~~~~l~~l~~~a~~~~i~iv~G~~-~~~~----~~~yNt~~vi~p~G~ii~~y~K~~l~~~E~~~f~~~~G~~~ 171 (345)
+.++..+++.++.|+++|+++++++++|++ ++.+ +++||++++++|+|++++.|+|+||+. |..+|. +|+..
T Consensus 74 ~~a~~~~~~~~~~l~~~a~~~~i~iv~G~~ge~~~~~~~~~~yNsa~vi~p~G~i~~~Y~K~hlf~-e~~~f~--pG~~~ 150 (341)
T 2uxy_A 74 ETAVAIPGEETEIFSRACRKANVWGVFSLTGERHEEHPRKAPYNTLVLIDNNGEIVQKYRKIIPWC-PIEGWY--PGGQT 150 (341)
T ss_dssp HHCBCSSSHHHHHHHHHHHHHTCEEEEEEEEECCTTTTSSCCEEEEEEECTTSCEEEEEECSSCCT-TTCCCB--CCCCC
T ss_pred HHhccCCCHHHHHHHHHHHHhCcEEEEEeeeeEcCCCCCCceEEEEEEECCCCcEEEEEEeeccCC-Ccccee--CCCCc
Confidence 556677789999999999999999999998 7653 349999999999999999999999975 555676 56677
Q ss_pred CeEEcC-CCcEEEEeecCCCchHHHHHHHHCCCeEEEEcCCCC---hhhHhhhhhheeeecCeEEEEeCcccccCCCCCC
Q 019166 172 PVFETP-IGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADS---REVWQASMTHIALEGGCFVLSANQFCRRKDYPPP 247 (345)
Q Consensus 172 ~vf~~~-~~rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~---~~~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~ 247 (345)
.+|+++ +.|||++||||++|||++|.++.+|||+|++|++|+ ..+|..++++||+||++||++||++|.
T Consensus 151 ~v~~~~~G~riG~~ICyD~~fpe~~r~l~~~Gadlll~psa~~~~~~~~~~~l~~arA~En~~~vv~an~~G~------- 223 (341)
T 2uxy_A 151 YVSEGPKGMKISLIIXDDGNYPEIWRDCAMKGAELIVRCQGYMYPAKDQQVMMAKAMAWANNCYVAVANAAGF------- 223 (341)
T ss_dssp CCEECGGGCEEEEEEGGGGGSHHHHHHHHHTTCSEEEEEECCBTTCHHHHHHHHHHHHHHHTCEEEEEECEEE-------
T ss_pred eEEECCCCCEEEEEEccCCcCcHHHHHHHHcCCCEEEEcCCCCCCcHHHHHHHHHHHHHhCCcEEEEECCCCC-------
Confidence 899995 559999999999999999999999999999999985 568999999999999999999999998
Q ss_pred CCCccCCCcCCCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHHHhhhcCCCCCCCCCccceee
Q 019166 248 PEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIARAKFDFDVVGHYSRPEVLSL 321 (345)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~~~r~~~~~~~~~rr~~ly~~ 321 (345)
.+...|+|+|+|++|+|+++++++.+++++++++||++.++..|..++.. .++|++
T Consensus 224 -------------~~~~~~~G~S~Iidp~G~vla~~~~~~e~il~a~id~~~~~~~R~~~~~~-----~~~~~l 279 (341)
T 2uxy_A 224 -------------DGVYSYFGHSAIIGFDGRTLGECGEEEMGIQYAQLSLSQIRDARANDQSQ-----NHLFKI 279 (341)
T ss_dssp -------------CSSCEEECCCEEECTTSCEEEECCSCTTCEEEEEEEHHHHHHHHHHCCTT-----CHHHHT
T ss_pred -------------CCCceeeeEEEEECCCCCEEEECCCCCCEEEEEEEcHHHHHHHHhhcchh-----hhHHhh
Confidence 45678999999999999999999878899999999999999999988763 346653
No 12
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=100.00 E-value=8.4e-44 Score=358.83 Aligned_cols=235 Identities=20% Similarity=0.205 Sum_probs=201.2
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCC
Q 019166 24 TVRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVP 103 (345)
Q Consensus 24 ~~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 103 (345)
+||||++|+++..+|++.|++++.+++++|+++|||||||||+++|||+ +.|....+.+.+.+.
T Consensus 6 kmKIAlaQln~~vGD~~~N~~~i~~~i~~Aa~~GAdLvvfPEL~ltGY~-------------~~Dl~~~~~~~~~~~--- 69 (565)
T 4f4h_A 6 KTRIALAQLNVTVGDFAGNVAKIVAAAQAAHDAGAHFLIAPELALSGYP-------------PEDLLLRPAFYAASD--- 69 (565)
T ss_dssp CEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSC-------------CGGGGGCHHHHHHHH---
T ss_pred ceEEEEEECCCCcccHHHHHHHHHHHHHHHHHCCCcEEECCCCcccCCC-------------hHHhhhCHHHHHHHH---
Confidence 5999999999998999999999999999999999999999999999999 444332333333221
Q ss_pred CHHHHHHHH-HHHhcCeEEEEeeEEeeC----------------CeeEEEEEEECCCCceEeeeecCCCCc----cccce
Q 019166 104 GPEVERLAA-MAGKYKVYLVMGVIERDG----------------YTLYCTVLFFDSQGHFLGKHRKIMPTA----LERII 162 (345)
Q Consensus 104 ~~~l~~l~~-~a~~~~i~iv~G~~~~~~----------------~~~yNt~~vi~p~G~ii~~y~K~~l~~----~E~~~ 162 (345)
..+..+.+ +++..++.|++|++.+.. +++||+++++. +|++++.|+|+||+. .|.+|
T Consensus 70 -~~l~~la~~~~~~~~i~ivvG~p~~~~~~~~~~~~~~~~~~~~~~lyNsa~vi~-~G~i~~~y~K~hLp~~~~f~E~r~ 147 (565)
T 4f4h_A 70 -AALAELAAQLKPFAGLAVLVGHPLRAPSADGNANRAIERGVPPVDTYNAASLIV-GGEVAGTYRKQDLPNTEVFDEKRY 147 (565)
T ss_dssp -HHHHHHHHHHTTSTTCEEEEEEEEECC-----CCCCCCTTSCCCSEEEEEEEEE-TTEEEEEEECCSCCCSTTCCGGGT
T ss_pred -HHHHHHHHHhhhcCCcEEEEeeeeeecccccccccceecccCCCceEEEEEEEE-CCEEEEEEeeeecCCCcccceecc
Confidence 23344433 333468999999886532 35999999998 799999999999854 48888
Q ss_pred eccCCCCCCCeEEcCCCcEEEEeecCCCchHHHHHHHHCCCeEEEEcCCCC-----hhhHhhhhhheeeecCeEEEEeCc
Q 019166 163 WGFGDGSTIPVFETPIGKIGAAICWENRMPLLRTAMYAKGIEIYCAPTADS-----REVWQASMTHIALEGGCFVLSANQ 237 (345)
Q Consensus 163 f~~~~G~~~~vf~~~~~rigv~IC~D~~fpe~~r~~~~~ga~li~~ps~~~-----~~~~~~~~~~rA~en~~~vv~~n~ 237 (345)
|. +|+.+.+|+++++|||+.||||+||||+.|.++.+||+++++|++++ .++|..++++||++|+++++++|+
T Consensus 148 f~--~G~~~~v~~~~g~~iGv~IC~Dlwfpe~~r~la~~GA~ii~~psAs~~~~gk~~~r~~ll~arA~e~~~~vvy~N~ 225 (565)
T 4f4h_A 148 FA--TDAAPYVFELNGVKFGVVICEDVWHASAAQLAKAAGAQVLIVPNGSPYHMNKDAVRIDILRARIRETGLPMVYVNL 225 (565)
T ss_dssp CC--CCCCCCEEEETTEEEEECCGGGGGSSHHHHHHHHTTCSEEEEEECCBCCTTHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_pred cc--CCCcceeEEecCcEEEEEEeehhcccchhHHHHhCCCeeeecccccccccCcHHHHHHHHHHHHHHhCCcEEEeee
Confidence 86 56778999999999999999999999999999999999999999985 478999999999999999999999
Q ss_pred ccccCCCCCCCCCccCCCcCCCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechh
Q 019166 238 FCRRKDYPPPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLG 298 (345)
Q Consensus 238 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~ 298 (345)
+|. +++..|+|+|+|++|+|+++++++.++|+++++++|..
T Consensus 226 vG~--------------------~~~~~f~G~S~iidp~G~vla~~~~f~e~~~~~d~d~~ 266 (565)
T 4f4h_A 226 VGG--------------------QDELVFDGGSFVLDGAGELVAKMPQFEEGNAIVEFDGA 266 (565)
T ss_dssp EEE--------------------ETTEEEEBCCEEECTTSCEEEECCBSCCEEEEEEEETT
T ss_pred ecC--------------------CCCeEEECCcceecCCCcEEEEccccccceEEEEeccc
Confidence 999 56789999999999999999999999999999999854
No 13
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=100.00 E-value=4.5e-44 Score=363.62 Aligned_cols=238 Identities=20% Similarity=0.226 Sum_probs=209.1
Q ss_pred CCcceEEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhccc
Q 019166 21 SAPTVRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAI 100 (345)
Q Consensus 21 ~~~~~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 100 (345)
|+.+||||++|+++..+|++.|++++.+++++|+++|+|||||||++++||+. .+......+.
T Consensus 1 M~~~~rvA~~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvvfPEl~ltGy~~-------------~dl~~~~~~~---- 63 (590)
T 3n05_A 1 MSLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPV-------------EDLALRSSFV---- 63 (590)
T ss_dssp -CEEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHTTTCSEEECCTTTTTCSCC-------------GGGGGCHHHH----
T ss_pred CCCccEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCcccccCCCh-------------HHHhhCHHHH----
Confidence 34579999999999989999999999999999999999999999999999983 3322222221
Q ss_pred CCCCHHHHHHHHHHHhc--C----eEEEEeeEEeeC----------CeeEEEEEEECCCCceEeeeecCCCCc----ccc
Q 019166 101 DVPGPEVERLAAMAGKY--K----VYLVMGVIERDG----------YTLYCTVLFFDSQGHFLGKHRKIMPTA----LER 160 (345)
Q Consensus 101 ~~~~~~l~~l~~~a~~~--~----i~iv~G~~~~~~----------~~~yNt~~vi~p~G~ii~~y~K~~l~~----~E~ 160 (345)
++..+.+.++|+++ + ++|++|++++.+ +++||++++++ +|++++.|+|+||+. .|.
T Consensus 64 ---~~~~~~l~~la~~~~~~~~~~i~ivvG~~~~~~~~~~~~~~~~~~lyNsa~vi~-~G~i~~~y~K~~L~~~~~f~E~ 139 (590)
T 3n05_A 64 ---EASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLH-RGRVALTFAKHHLPNYGVFDEF 139 (590)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCTTSCEEEEEEEECSSCBTTTTBCTTCEEEEEEEEE-TTEEEEEEECCCCCSSSSCCHH
T ss_pred ---HHHHHHHHHHHHhhhhccCCceEEEEeeEEEEcCcccccccccCCeeEEEEEEe-CCEEEEEEeCccCCCCCccCcc
Confidence 24677888999887 5 999999997753 37999999999 999999999999865 588
Q ss_pred ceeccCCCCCCCeEEcCCCcEEEEeecCCCc-hHHHHHHHHCCCeEEEEcCCCC-----hhhHhhhhhheeeecCeEEEE
Q 019166 161 IIWGFGDGSTIPVFETPIGKIGAAICWENRM-PLLRTAMYAKGIEIYCAPTADS-----REVWQASMTHIALEGGCFVLS 234 (345)
Q Consensus 161 ~~f~~~~G~~~~vf~~~~~rigv~IC~D~~f-pe~~r~~~~~ga~li~~ps~~~-----~~~~~~~~~~rA~en~~~vv~ 234 (345)
++|. +|+.+.+|+++++|||++||||+|| |++.+.++.+||++|++|++|+ ..+|..++++||+||++++++
T Consensus 140 r~f~--~G~~~~v~~~~g~~iG~~IC~D~~f~pe~~~~la~~Ga~ii~~psa~p~~~gk~~~~~~l~~~rA~e~~~~vv~ 217 (590)
T 3n05_A 140 RYFV--PGDTMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAY 217 (590)
T ss_dssp HHCC--CCCEEEEEEETTEEEEEEEGGGGGSTTSHHHHHHHTTCSEEEEEECCBCCCCSSCHHHHHHHHHHHHHTSEEEE
T ss_pred cccc--CCCcceEEEECCEEEEEEeehhhccCChHHHHHHHcCCCEEEEecCCccccCcHHHHHHHHHHHHHHhCCEEEE
Confidence 8887 5667899999999999999999999 9999999999999999999985 468899999999999999999
Q ss_pred eCcccccCCCCCCCCCccCCCcCCCCCCCccccceeEEECCCCcccccCCCCCceEEEEEechhHHH
Q 019166 235 ANQFCRRKDYPPPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYDGEALISADLDLGEIA 301 (345)
Q Consensus 235 ~n~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~~e~~l~~~idl~~~~ 301 (345)
||++|. .++..|+|+|+|++|+|+++++++.+++++++++||++.++
T Consensus 218 an~~G~--------------------~~~~~f~G~S~iidp~G~vla~~~~~~e~~~~~didl~~~~ 264 (590)
T 3n05_A 218 LAMIGG--------------------QDELVFDGDSIVVDRDGEVVARAPQFSEGCVVLDLDLPAAE 264 (590)
T ss_dssp EECEEE--------------------ETTEEEEBCCEEECTTSCEEEECCBTSCEEEEEEEEECCCC
T ss_pred EecccC--------------------CCCeEEeCcEEEECCCCcEEEEcCCCCCcEEEEEEcccccc
Confidence 999998 46789999999999999999999888999999999988763
No 14
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}
Probab=100.00 E-value=3.1e-43 Score=359.46 Aligned_cols=245 Identities=16% Similarity=0.159 Sum_probs=194.7
Q ss_pred cceEEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCC
Q 019166 23 PTVRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDV 102 (345)
Q Consensus 23 ~~~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 102 (345)
+.||||++|+++..+|++.|++++.+++++|+++|+|||||||++++||+. .+....+ ..
T Consensus 4 ~~~rVA~~Q~~~~~~d~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGY~~-------------~dl~~~~-------~~ 63 (634)
T 3ilv_A 4 STIRIGGAAVNQTPIDWENNVKNILDAIEEAKNANVEILCLPELCITGYGC-------------EDLFLTD-------WV 63 (634)
T ss_dssp CEEEEEEEEECCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCSCC-------------GGGGGSH-------HH
T ss_pred CCeEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEcCCCccccCCh-------------HHHhhCh-------hh
Confidence 479999999999989999999999999999999999999999999999983 3321111 11
Q ss_pred CCHHHHHHHHHHHhc-CeEEEEeeEEeeCCeeEEEEEEECCCCceEeeeecCCCCc----cccceeccCCCC--------
Q 019166 103 PGPEVERLAAMAGKY-KVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTA----LERIIWGFGDGS-------- 169 (345)
Q Consensus 103 ~~~~l~~l~~~a~~~-~i~iv~G~~~~~~~~~yNt~~vi~p~G~ii~~y~K~~l~~----~E~~~f~~~~G~-------- 169 (345)
.++..+.+.++|+++ +++|++|.+++.++++||+++++ ++|++++.|+|+||+. .|.++|.+|...
T Consensus 64 ~~~~~~~l~~la~~~~~i~ivvG~p~~~~~~lyNsa~vi-~~G~il~~y~K~hL~~~~~f~E~r~f~pG~~~~~~~~~~~ 142 (634)
T 3ilv_A 64 AETAIEYCFEIAASCTDITVSLGLPMRIAGITYNCVCLV-ENGIVKGFSAKQFLANEGVHYETRWFTAWPRNHTTTFLYN 142 (634)
T ss_dssp HHHHHHHHHHHHTTCTTSEEEEEEEEEETTEEEEEEEEE-ETTEEEEEEECSSCCCSTTCCGGGTCCCCCTTCEEEEEET
T ss_pred hHHHHHHHHHHHHhCCCCEEEEeeeEeeCCCccEEEEEE-ECCeEEEEEcCEeCCCCCCcChhhhcCCCCccccceeccc
Confidence 235678899999986 99999999998899999999999 6999999999999875 588998755421
Q ss_pred ------CCCeEEcCCCcEEEEeecCCCchH-HHHHHHHCCCeEEEEcCCCC-----hhhHhhhhhheeeecCeEEEEeCc
Q 019166 170 ------TIPVFETPIGKIGAAICWENRMPL-LRTAMYAKGIEIYCAPTADS-----REVWQASMTHIALEGGCFVLSANQ 237 (345)
Q Consensus 170 ------~~~vf~~~~~rigv~IC~D~~fpe-~~r~~~~~ga~li~~ps~~~-----~~~~~~~~~~rA~en~~~vv~~n~ 237 (345)
...+|+++++|||+.||||+|||+ +.+.++.+|||+|++|++++ ..+|+.++++||+||++++++||+
T Consensus 143 g~~~p~g~~vf~~~g~~iG~~IC~D~~fPe~~~r~la~~GAdii~~psas~~~~gk~~~~~~l~~~rA~e~~~~vv~aN~ 222 (634)
T 3ilv_A 143 DVKYPFGDVLYNVKDARIGFEICEDAWRTDRVGIRHYEKGATLVLNPSASHFAFGKSAIRYDLVIGGSERFDCTYVYANL 222 (634)
T ss_dssp TEEEEEESCCEEETTEEEEECCTTC----------CGGGTCSEEEEEECCBCCTTHHHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred CcccccCCeEEEECCEEEEEEEeccccCChHHHHHHHHCCCcEEEEecCCccccCcHHHHHHHHHHHHHHhCCEEEEEcC
Confidence 016899999999999999999998 89999999999999999984 468999999999999999999999
Q ss_pred ccccCCCCCCCCCccCCCcCCCCCCCccccceeEEECCCCcccccCCCC---CceEEEEEechhHHHHhhhcCC
Q 019166 238 FCRRKDYPPPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYD---GEALISADLDLGEIARAKFDFD 308 (345)
Q Consensus 238 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~---~e~~l~~~idl~~~~~~r~~~~ 308 (345)
+|.+ .+...|+|+|+|+ |+|+++++++.+ ++++++++||++.++..|..++
T Consensus 223 ~G~~-------------------~~~~~f~G~S~I~-p~G~vla~~~~f~~~~~~vi~a~iDl~~~~~~R~~~~ 276 (634)
T 3ilv_A 223 LGNE-------------------AGRMIYDGEVLIA-HKGKLIQRNDRLSFKNVNLIYADIATDSAETPETVLT 276 (634)
T ss_dssp EEES-------------------SSSCEEECCEEEE-ETTEEEEECCSSCSSSEEEEEEEEEC-----------
T ss_pred ccCC-------------------CCceEEcceEEEE-cCCeEEEECCCCCCCCceEEEEEEEhHHhHHHHhcCC
Confidence 9982 3567999999887 999999998754 4589999999999988887764
No 15
>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*
Probab=100.00 E-value=1.8e-41 Score=348.19 Aligned_cols=254 Identities=18% Similarity=0.197 Sum_probs=210.4
Q ss_pred CCcceEEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhccc
Q 019166 21 SAPTVRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAI 100 (345)
Q Consensus 21 ~~~~~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 100 (345)
..+.||||++|+++..+|++.|++++.+++++|+++|+|||||||++++||.. .+......+.+.+
T Consensus 9 ~~g~~rVAl~Q~~~~~~D~~~N~~~i~~~i~~A~~~gadLvVfPEl~ltGY~~-------------~dl~~~~~~~~~~- 74 (680)
T 3sdb_A 9 QHGFVRVAACTHHTTIGDPAANAASVLDMARACHDDGAALAVFPELTLSGYSI-------------EDVLLQDSLLDAV- 74 (680)
T ss_dssp GGTEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCSEEECCTTTTTCGGG-------------GGGGGCHHHHHHH-
T ss_pred hCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcccCCCh-------------HHHhhCHHHHHhh-
Confidence 34579999999999889999999999999999999999999999999999983 3332222222222
Q ss_pred CCCCHHHHHHHHHHHhcCeEEEEeeEEeeCCeeEEEEEEECCCCceEeeeecCCCCc----cccceeccCCCCCC-----
Q 019166 101 DVPGPEVERLAAMAGKYKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHRKIMPTA----LERIIWGFGDGSTI----- 171 (345)
Q Consensus 101 ~~~~~~l~~l~~~a~~~~i~iv~G~~~~~~~~~yNt~~vi~p~G~ii~~y~K~~l~~----~E~~~f~~~~G~~~----- 171 (345)
.+.++.|+++|++++++|++|++++.++++||++++++ +|++++.|+|+||+. .|.++|.+|.....
T Consensus 75 ---~~~l~~l~~~a~~~~i~ivvG~p~~~~~~lyNsa~vi~-~G~il~~y~K~hL~~~~~f~E~r~F~~G~~~~~~i~~~ 150 (680)
T 3sdb_A 75 ---EDALLDLVTESADLLPVLVVGAPLRHRHRIYNTAVVIH-RGAVLGVVPKSYLPTYREFYERRQMAPGDGERGTIRIG 150 (680)
T ss_dssp ---HHHHHHHHHHHTTCSSEEEEEEEEEETTEEEEEEEEEE-TTEEEEEEECSCCCEETTEEGGGTEECCTTCCSEEEET
T ss_pred ---HHHHHHHHHHhhcCCcEEEEeceEEeCCCceEEEEEEe-CCCEEEEEeeecCCCCCccChhhhcCCCCCCCceeeec
Confidence 35789999999999999999999988999999999999 999999999999876 48999986543210
Q ss_pred ---------CeE---EcCCCcEEEEeecCCCchHHH-HHHHHCCCeEEEEcCCCC-----hhhHhhhhhheeeec-CeEE
Q 019166 172 ---------PVF---ETPIGKIGAAICWENRMPLLR-TAMYAKGIEIYCAPTADS-----REVWQASMTHIALEG-GCFV 232 (345)
Q Consensus 172 ---------~vf---~~~~~rigv~IC~D~~fpe~~-r~~~~~ga~li~~ps~~~-----~~~~~~~~~~rA~en-~~~v 232 (345)
.+| +++++|||+.||||+|||++. +.++.+||++|++|++++ ..+|..+++.+|.++ ++||
T Consensus 151 g~~vpfg~~~vf~~~~~~g~riGv~IC~Dl~fPe~~~r~la~~GAdiil~pSasp~~~gk~~~r~~l~~~~aar~~~~yV 230 (680)
T 3sdb_A 151 GADVAFGTDLLFAASDLPGFVLHVEIAEDMFVPMPPSAEAALAGATVLANLSGSPITIGRAEDRRLLARSASARCLAAYV 230 (680)
T ss_dssp TEEEEBSSCEEEEETTCTTCEEEEEEGGGGGSSSCHHHHHHHHTCCEEEEECCCCCCTTHHHHHHHHHHHHHHHTTSEEE
T ss_pred CcccccCCceeEeeeccCCeEEEEEEeccccccccHHHHHHhcCCeEEEEecCCccccCcHHHHHHHHHHHHHHhCCcEE
Confidence 156 689999999999999999985 899999999999999985 245667777776665 5555
Q ss_pred EEeCcccccCCCCCCCCCccCCCcCCCCCCCccccceeEEECCCCcccccCCCC--CceEEEEEechhHHHHhhhcCCCC
Q 019166 233 LSANQFCRRKDYPPPPEYEFSGTEQDLTPDSIVCAGGSVIISPSGSVLAGPNYD--GEALISADLDLGEIARAKFDFDVV 310 (345)
Q Consensus 233 v~~n~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~S~ii~p~G~vl~~~~~~--~e~~l~~~idl~~~~~~r~~~~~~ 310 (345)
+.+|..|. +.++..|+|+|+|+ |+|+++++++.+ ++++++++||++.++..|..++++
T Consensus 231 ~a~~~~G~-------------------~~~~l~f~G~S~I~-p~G~vla~~~~f~~~e~ll~adiDl~~l~~~R~~~~~~ 290 (680)
T 3sdb_A 231 YAAAGEGE-------------------STTDLAWDGQTMIW-ENGALLAESERFPKGVRRSVADVDTELLRSERLRMGTF 290 (680)
T ss_dssp EECCCTTS-------------------CCSSCCCCCCEEEE-ETTEEEEECCSSCSSCEEEEEEEEHHHHHHHHHHCHHH
T ss_pred EEECCccc-------------------CCCCeEEeccEEEE-cCCEEEEECCCCCCCCcEEEEEEcHHHHHHHHHhCCch
Confidence 55554554 24677899999999 999999999876 899999999999999999888876
Q ss_pred CC
Q 019166 311 GH 312 (345)
Q Consensus 311 ~~ 312 (345)
.+
T Consensus 291 ~~ 292 (680)
T 3sdb_A 291 DD 292 (680)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 16
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=79.79 E-value=3.9 Score=36.53 Aligned_cols=70 Identities=24% Similarity=0.246 Sum_probs=44.1
Q ss_pred HHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCHHHHHHHHHHHhcCeEEEEeeE-E
Q 019166 49 LLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYKVYLVMGVI-E 127 (345)
Q Consensus 49 ~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~l~~~a~~~~i~iv~G~~-~ 127 (345)
+.+..+.+|+|+|+.|=.|...+. . .+...++..|.+++++++.-.. -
T Consensus 173 ~~r~l~~~Ga~li~~ps~~~~~~~--------------------~-----------~~~~~~~~rA~en~~~vv~~n~~G 221 (283)
T 3hkx_A 173 MVRAAAARGAQLVLVPTALAGDET--------------------S-----------VPGILLPARAVENGITLAYANHCG 221 (283)
T ss_dssp HHHHHHHTTCSEEEEECCCBSCCT--------------------H-----------HHHTHHHHHHHHHTCEEEEECBEE
T ss_pred HHHHHHHCCCCEEEECCCCCCccc--------------------H-----------HHHHHHHHHHHHhCCEEEEEcccc
Confidence 444556789999999976543211 0 1223456668889999887543 2
Q ss_pred eeCCe-eEEEEEEECCCCceEee
Q 019166 128 RDGYT-LYCTVLFFDSQGHFLGK 149 (345)
Q Consensus 128 ~~~~~-~yNt~~vi~p~G~ii~~ 149 (345)
.+++. .+=.+.+++|+|+++..
T Consensus 222 ~~~~~~~~G~S~ii~p~G~vl~~ 244 (283)
T 3hkx_A 222 PEGGLVFDGGSVVVGPAGQPLGE 244 (283)
T ss_dssp EETTEEEECCCEEECTTSCEEEE
T ss_pred CCCCeEEeeEEEEECCCCCEEEe
Confidence 23333 33356889999998754
No 17
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=75.46 E-value=4.8 Score=35.92 Aligned_cols=41 Identities=17% Similarity=0.239 Sum_probs=27.9
Q ss_pred HHHHHHHhcCeEEEEeeE-EeeC-CeeEEEEEEECCCCceEee
Q 019166 109 RLAAMAGKYKVYLVMGVI-ERDG-YTLYCTVLFFDSQGHFLGK 149 (345)
Q Consensus 109 ~l~~~a~~~~i~iv~G~~-~~~~-~~~yNt~~vi~p~G~ii~~ 149 (345)
.++..|.+++++++.-.. -.++ ...+=.+.+++|+|+++..
T Consensus 203 ~~~arA~en~~~vv~~n~~G~~~~~~~~G~S~ii~p~G~vl~~ 245 (281)
T 3p8k_A 203 LLKARAIENNMFVIGTNSTGFDGNTEYAGHSIVINPNGDLVGE 245 (281)
T ss_dssp HHHHHHHHHTSEEEEEECEEECSSCEEECCCEEECTTSCEEEE
T ss_pred HHHHHHHHcCCEEEEEccCcCCCCcEEeeeEEEECCCCCEEEe
Confidence 456678899999986533 2223 3444567889999998765
No 18
>2uxy_A Aliphatic amidase; nitrilase superfamily, hydrolase, acyl transfer, thiol enzymes, hydroxamic acid; HET: C3Y; 1.25A {Pseudomonas aeruginosa} PDB: 2plq_A
Probab=70.86 E-value=8.7 Score=35.32 Aligned_cols=70 Identities=24% Similarity=0.379 Sum_probs=44.0
Q ss_pred HHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCHHHHHHHHHHHhcCeEEEEeeEE-
Q 019166 49 LLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYKVYLVMGVIE- 127 (345)
Q Consensus 49 ~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~l~~~a~~~~i~iv~G~~~- 127 (345)
+.+.++.+|+|+|+.|=.|.. . .. . .+...++..|.+++++++.-...
T Consensus 174 ~~r~l~~~Gadlll~psa~~~--~---------------~~---~-----------~~~~l~~arA~En~~~vv~an~~G 222 (341)
T 2uxy_A 174 IWRDCAMKGAELIVRCQGYMY--P---------------AK---D-----------QQVMMAKAMAWANNCYVAVANAAG 222 (341)
T ss_dssp HHHHHHHTTCSEEEEEECCBT--T---------------CH---H-----------HHHHHHHHHHHHHTCEEEEEECEE
T ss_pred HHHHHHHcCCCEEEEcCCCCC--C---------------cH---H-----------HHHHHHHHHHHhCCcEEEEECCCC
Confidence 444556689999999965421 1 00 0 13345667788899998875432
Q ss_pred eeC-CeeEEEEEEECCCCceEee
Q 019166 128 RDG-YTLYCTVLFFDSQGHFLGK 149 (345)
Q Consensus 128 ~~~-~~~yNt~~vi~p~G~ii~~ 149 (345)
.++ ...+=.+.+++|+|+++..
T Consensus 223 ~~~~~~~~G~S~Iidp~G~vla~ 245 (341)
T 2uxy_A 223 FDGVYSYFGHSAIIGFDGRTLGE 245 (341)
T ss_dssp ECSSCEEECCCEEECTTSCEEEE
T ss_pred CCCCceeeeEEEEECCCCCEEEE
Confidence 222 2344467889999998754
No 19
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=69.58 E-value=8.6 Score=33.65 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=42.1
Q ss_pred HHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCHHHHHHHHHHHhcCeEEEEeeE-Ee
Q 019166 50 LAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYKVYLVMGVI-ER 128 (345)
Q Consensus 50 i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~l~~~a~~~~i~iv~G~~-~~ 128 (345)
.+..+.+|+|+|+.|=.|... .+...++..|.+++++++.-.. -.
T Consensus 155 ~r~~~~~ga~li~~ps~~~~~----------------------------------~~~~~~~~rA~en~~~vv~~n~~G~ 200 (262)
T 3ivz_A 155 ARTLALKGADVIAHPANLVMP----------------------------------YAPRAMPIRALENKVYTVTADRVGE 200 (262)
T ss_dssp HHHHHHTTCSEEEEEECCCSS----------------------------------CHHHHHHHHHHHHTCEEEEEECCSE
T ss_pred HHHHHHCCCCEEEEcCCCCch----------------------------------HHHHHHHHHHHhcCcEEEEECCCCc
Confidence 444566899999999764321 0123456677889999887543 12
Q ss_pred eCCe-eEEEEEEECCCCceEee
Q 019166 129 DGYT-LYCTVLFFDSQGHFLGK 149 (345)
Q Consensus 129 ~~~~-~yNt~~vi~p~G~ii~~ 149 (345)
+++. .+=.+.+++|+|+++..
T Consensus 201 ~~~~~~~G~S~ii~p~G~il~~ 222 (262)
T 3ivz_A 201 ERGLKFIGKSLIASPKAEVLSM 222 (262)
T ss_dssp ETTEECCCCCEEECTTSCEEEE
T ss_pred CCCceEeeeEEEECCCCCEeec
Confidence 2222 33457889999998754
No 20
>2dyu_A Formamidase; AMIF, CEK, catalytic triad, helicobacter pylori aliphatic amidase, hydrolase; 1.75A {Helicobacter pylori} PDB: 2dyv_A 2e2l_A 2e2k_A
Probab=68.17 E-value=10 Score=34.76 Aligned_cols=69 Identities=14% Similarity=0.040 Sum_probs=43.1
Q ss_pred HHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCHHHHHHHHHHHhcCeEEEEeeEE-
Q 019166 49 LLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYKVYLVMGVIE- 127 (345)
Q Consensus 49 ~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~l~~~a~~~~i~iv~G~~~- 127 (345)
+.+..+.+|+|+|+.|=.|.. . .. ..+...++..|.+++++++.-...
T Consensus 174 ~~r~~~~~Gadlil~psaw~~--~---------------~~--------------~~~~~~~~arA~En~~~vv~an~~G 222 (334)
T 2dyu_A 174 LAREAAYKGCNVYIRISGYST--Q---------------VN--------------DQWILTNRSNAWHNLMYTVSVNLAG 222 (334)
T ss_dssp HHHHHHHTTCSEEEEEESSCT--T---------------SH--------------HHHHHHHHHHHHHHTCEEEEEECSB
T ss_pred HHHHHHHcCCCEEEEeCCCCC--C---------------cH--------------HHHHHHHHHHHHhCCCEEEEECCCc
Confidence 444455689999999965421 1 00 012344566788889988775431
Q ss_pred e-eCCeeEEEEEEECCCCceEe
Q 019166 128 R-DGYTLYCTVLFFDSQGHFLG 148 (345)
Q Consensus 128 ~-~~~~~yNt~~vi~p~G~ii~ 148 (345)
. .+...+=.+.+++|+|+++.
T Consensus 223 ~~~~~~~~G~S~Iidp~G~vla 244 (334)
T 2dyu_A 223 YDNVFYYFGEGQICNFDGTTLV 244 (334)
T ss_dssp SSSSCCCCCEEEEECTTSCEEE
T ss_pred CCCCeeeeeEEEEECCCCCEee
Confidence 1 22345567788999999875
No 21
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=66.09 E-value=56 Score=27.74 Aligned_cols=63 Identities=10% Similarity=0.032 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCHHHHHHHHHHHhcC
Q 019166 39 TPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYK 118 (345)
Q Consensus 39 ~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~l~~~a~~~~ 118 (345)
.+..++.+.+.++.|++-|++.|++. +|.... + ......+..+. +.++.+.+.|+++|
T Consensus 80 ~~~~~~~~~~~i~~a~~lG~~~v~~~----~g~~~~-------~---~~~~~~~~~~~--------~~l~~l~~~a~~~g 137 (260)
T 1k77_A 80 EHEAHADIDLALEYALALNCEQVHVM----AGVVPA-------G---EDAERYRAVFI--------DNIRYAADRFAPHG 137 (260)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECC----CCBCCT-------T---SCHHHHHHHHH--------HHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEC----cCCCCC-------C---CCHHHHHHHHH--------HHHHHHHHHHHHcC
Confidence 46788999999999999999999873 232200 0 00111112221 35777888888889
Q ss_pred eEEEE
Q 019166 119 VYLVM 123 (345)
Q Consensus 119 i~iv~ 123 (345)
+.+.+
T Consensus 138 v~l~~ 142 (260)
T 1k77_A 138 KRILV 142 (260)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 87654
No 22
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=66.03 E-value=36 Score=30.26 Aligned_cols=74 Identities=11% Similarity=0.077 Sum_probs=48.4
Q ss_pred eEEEEEeccCCC-----CChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcc
Q 019166 25 VRATVVQASTIF-----YDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASA 99 (345)
Q Consensus 25 ~rIa~vQ~~~~~-----~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 99 (345)
+++..+...... ...+..++.+.+.++.|++-|++.|++|-. . . ......+..+.
T Consensus 90 L~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~~~v~~~~~--~--~-------------~~~~~~~~~~~--- 149 (305)
T 3obe_A 90 LRISSSHLTPSLREYTKENMPKFDEFWKKATDIHAELGVSCMVQPSL--P--R-------------IENEDDAKVVS--- 149 (305)
T ss_dssp CEEEEEBCCCSCCCCCGGGHHHHHHHHHHHHHHHHHHTCSEEEECCC--C--C-------------CSSHHHHHHHH---
T ss_pred CeEEEeeccccccccchhhHHHHHHHHHHHHHHHHHcCCCEEEeCCC--C--C-------------CCCHHHHHHHH---
Confidence 677666654322 124667888999999999999999998721 1 0 01112222222
Q ss_pred cCCCCHHHHHHHHHHHhcCeEEEE
Q 019166 100 IDVPGPEVERLAAMAGKYKVYLVM 123 (345)
Q Consensus 100 ~~~~~~~l~~l~~~a~~~~i~iv~ 123 (345)
+.+..+.+.|+++|+.+.+
T Consensus 150 -----~~l~~l~~~a~~~Gv~l~l 168 (305)
T 3obe_A 150 -----EIFNRAGEITKKAGILWGY 168 (305)
T ss_dssp -----HHHHHHHHHHHTTTCEEEE
T ss_pred -----HHHHHHHHHHHHcCCEEEE
Confidence 3578888999999998865
No 23
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=64.40 E-value=58 Score=27.97 Aligned_cols=62 Identities=10% Similarity=0.029 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCHHHHHHHHHHHhcC
Q 019166 39 TPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYK 118 (345)
Q Consensus 39 ~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~l~~~a~~~~ 118 (345)
.+..++.+.+.++.|+.-|++.|++. +|.+.. ......++.+. +.++.+.+.|+++|
T Consensus 88 r~~~~~~~~~~i~~A~~lGa~~v~~~----~g~~~~-----------~~~~~~~~~~~--------~~l~~l~~~a~~~G 144 (269)
T 3ngf_A 88 EQEFRDNVDIALHYALALDCRTLHAM----SGITEG-----------LDRKACEETFI--------ENFRYAADKLAPHG 144 (269)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEECC----BCBCTT-----------SCHHHHHHHHH--------HHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEc----cCCCCC-----------CCHHHHHHHHH--------HHHHHHHHHHHHcC
Confidence 46778899999999999999998873 221100 00111122221 35778888899999
Q ss_pred eEEEE
Q 019166 119 VYLVM 123 (345)
Q Consensus 119 i~iv~ 123 (345)
+.+.+
T Consensus 145 v~l~l 149 (269)
T 3ngf_A 145 ITVLV 149 (269)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88764
No 24
>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}
Probab=61.63 E-value=19 Score=35.58 Aligned_cols=72 Identities=17% Similarity=0.219 Sum_probs=46.8
Q ss_pred HHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCHHHHHHHHHHHhcCeEEEEeeE-E
Q 019166 49 LLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYKVYLVMGVI-E 127 (345)
Q Consensus 49 ~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~l~~~a~~~~i~iv~G~~-~ 127 (345)
..+.++.+||++|+.|=.+. +. .++.. .....++..|.+++++++.-.. .
T Consensus 177 ~~r~la~~GA~ii~~psAs~--~~--------------~gk~~-------------~r~~ll~arA~e~~~~vvy~N~vG 227 (565)
T 4f4h_A 177 AAQLAKAAGAQVLIVPNGSP--YH--------------MNKDA-------------VRIDILRARIRETGLPMVYVNLVG 227 (565)
T ss_dssp HHHHHHHTTCSEEEEEECCB--CC--------------TTHHH-------------HHHHHHHHHHHHHCCCEEEEECEE
T ss_pred hhHHHHhCCCeeeecccccc--cc--------------cCcHH-------------HHHHHHHHHHHHhCCcEEEeeeec
Confidence 34455678999999996533 22 11110 1244577888899998887533 2
Q ss_pred eeCC-eeEEEEEEECCCCceEee
Q 019166 128 RDGY-TLYCTVLFFDSQGHFLGK 149 (345)
Q Consensus 128 ~~~~-~~yNt~~vi~p~G~ii~~ 149 (345)
.+++ .++-.+++++|+|+++..
T Consensus 228 ~~~~~~f~G~S~iidp~G~vla~ 250 (565)
T 4f4h_A 228 GQDELVFDGGSFVLDGAGELVAK 250 (565)
T ss_dssp EETTEEEEBCCEEECTTSCEEEE
T ss_pred CCCCeEEECCcceecCCCcEEEE
Confidence 3333 566788999999998765
No 25
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}
Probab=56.88 E-value=26 Score=30.52 Aligned_cols=42 Identities=17% Similarity=-0.014 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCeEEEEeeE-EeeCC--eeEEEEEEECCCCceEee
Q 019166 108 ERLAAMAGKYKVYLVMGVI-ERDGY--TLYCTVLFFDSQGHFLGK 149 (345)
Q Consensus 108 ~~l~~~a~~~~i~iv~G~~-~~~~~--~~yNt~~vi~p~G~ii~~ 149 (345)
..++..|.+++++++.-.. -.+++ ...=.+.+++|+|+++..
T Consensus 185 ~~~~~rA~en~~~vv~an~~G~~~~~~~~~G~S~ii~p~G~v~~~ 229 (266)
T 2e11_A 185 TLLRARAIENLCFVAAVNRVGVDGNQLHYAGDSAVIDFLGQPQVE 229 (266)
T ss_dssp HHHHHHHHHTTSEEEEEECEEECTTSCEEEEEEEEECTTSCEEEE
T ss_pred HHHHHHHHhcCcEEEEEcCCcCCCCCceEeeeEEEECCCCceeee
Confidence 3456678899999987633 22222 445568899999998754
No 26
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=56.82 E-value=10 Score=31.92 Aligned_cols=40 Identities=5% Similarity=0.076 Sum_probs=22.9
Q ss_pred ceEEEEEeccCC-CCChHHHHHHHHHHHHHHHhCCCcEEEccCc
Q 019166 24 TVRATVVQASTI-FYDTPATLGKAERLLAEAAGYGSQLVVFPEA 66 (345)
Q Consensus 24 ~~rIa~vQ~~~~-~~d~~~n~~~i~~~i~~A~~~gadliVfPE~ 66 (345)
+|||....++-. ..+.....+.+.++| .+.++|||+|.|.
T Consensus 13 ~l~v~s~Ni~g~~~~~~~~r~~~i~~~i---~~~~pDIi~LQEv 53 (256)
T 4fva_A 13 EVSVMSWNIDGLDGRSLLTRMKAVAHIV---KNVNPDILFLQEV 53 (256)
T ss_dssp EEEEEEEECCTTCCTTHHHHHHHHHHHH---HHHCCSEEEEEEE
T ss_pred EEEEEEEecCCCCCcCHHHHHHHHHHHH---HHcCCCEEEEEec
Confidence 456555544311 112334444455555 4468999999997
No 27
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=55.37 E-value=65 Score=27.77 Aligned_cols=77 Identities=14% Similarity=0.216 Sum_probs=46.1
Q ss_pred eEEEEEeccC---CCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccC
Q 019166 25 VRATVVQAST---IFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAID 101 (345)
Q Consensus 25 ~rIa~vQ~~~---~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 101 (345)
+++..+.... .....+..++.+.+.++.|+.-|++.|++. +|+... + ......+..+.
T Consensus 62 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~~~v~~~----~g~~~~-------~---~~~~~~~~~~~----- 122 (286)
T 3dx5_A 62 LEITMISDYLDISLSADFEKTIEKCEQLAILANWFKTNKIRTF----AGQKGS-------A---DFSQQERQEYV----- 122 (286)
T ss_dssp CCEEEEECCCCCSTTSCHHHHHHHHHHHHHHHHHHTCCEEEEC----SCSSCG-------G---GSCHHHHHHHH-----
T ss_pred CeEEEEecCCCCCCchhHHHHHHHHHHHHHHHHHhCCCEEEEc----CCCCCc-------c---cCcHHHHHHHH-----
Confidence 5555553322 223467788999999999999999988651 232200 0 01111222222
Q ss_pred CCCHHHHHHHHHHHhcCeEEEE
Q 019166 102 VPGPEVERLAAMAGKYKVYLVM 123 (345)
Q Consensus 102 ~~~~~l~~l~~~a~~~~i~iv~ 123 (345)
+.++.+.+.|+++|+.+.+
T Consensus 123 ---~~l~~l~~~a~~~Gv~l~l 141 (286)
T 3dx5_A 123 ---NRIRMICELFAQHNMYVLL 141 (286)
T ss_dssp ---HHHHHHHHHHHHTTCEEEE
T ss_pred ---HHHHHHHHHHHHhCCEEEE
Confidence 3577888889999987655
No 28
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=55.31 E-value=43 Score=29.25 Aligned_cols=62 Identities=19% Similarity=0.319 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCHHHHHHHHHHHhcCe
Q 019166 40 PATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYKV 119 (345)
Q Consensus 40 ~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~l~~~a~~~~i 119 (345)
+..++.+.+.++.|+.-|++.|+++ |+... . .+.....++.+. +.++.+.+.|+++|+
T Consensus 104 ~~~~~~~~~~i~~A~~lG~~~v~~~-----~~~~~--~-------~~~~~~~~~~~~--------~~l~~l~~~a~~~Gv 161 (295)
T 3cqj_A 104 AQGLEIMRKAIQFAQDVGIRVIQLA-----GYDVY--Y-------QEANNETRRRFR--------DGLKESVEMASRAQV 161 (295)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEC-----CCSCS--S-------SCCCHHHHHHHH--------HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEC-----CCCCC--c-------CcCHHHHHHHHH--------HHHHHHHHHHHHhCC
Confidence 4668889999999999999999986 21100 0 011112222222 357788888889998
Q ss_pred EEEE
Q 019166 120 YLVM 123 (345)
Q Consensus 120 ~iv~ 123 (345)
.+.+
T Consensus 162 ~l~l 165 (295)
T 3cqj_A 162 TLAM 165 (295)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7655
No 29
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=53.13 E-value=38 Score=29.11 Aligned_cols=76 Identities=9% Similarity=-0.011 Sum_probs=44.4
Q ss_pred eEEEEEeccCCCCC----hHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhccc
Q 019166 25 VRATVVQASTIFYD----TPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAI 100 (345)
Q Consensus 25 ~rIa~vQ~~~~~~d----~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 100 (345)
+++..+.....+.+ ....++.+.+.++.|..-|++.|+++ ..++.. . + ....++...
T Consensus 61 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~~~v~~~--~~p~~~-----------~-~-~~~~~~~~~---- 121 (281)
T 3u0h_A 61 LVLANLGLPLNLYDSEPVFLRELSLLPDRARLCARLGARSVTAF--LWPSMD-----------E-E-PVRYISQLA---- 121 (281)
T ss_dssp CEECCEECCSCTTSCHHHHHHHHHTHHHHHHHHHHTTCCEEEEE--CCSEES-----------S-C-HHHHHHHHH----
T ss_pred CceEEecccccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEe--ecCCCC-----------C-c-chhhHHHHH----
Confidence 55555554433222 34556788889999999999999854 111111 0 0 011122221
Q ss_pred CCCCHHHHHHHHHHHhcCeEEEE
Q 019166 101 DVPGPEVERLAAMAGKYKVYLVM 123 (345)
Q Consensus 101 ~~~~~~l~~l~~~a~~~~i~iv~ 123 (345)
+.++.+.+.|+++|+.+.+
T Consensus 122 ----~~l~~l~~~a~~~Gv~l~l 140 (281)
T 3u0h_A 122 ----RRIRQVAVELLPLGMRVGL 140 (281)
T ss_dssp ----HHHHHHHHHHGGGTCEEEE
T ss_pred ----HHHHHHHHHHHHcCCEEEE
Confidence 3577788888999988765
No 30
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}
Probab=52.10 E-value=39 Score=33.49 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=45.1
Q ss_pred HHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCHHHHHHHHHHHhcCeEEEEeeE-E
Q 019166 49 LLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYKVYLVMGVI-E 127 (345)
Q Consensus 49 ~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~l~~~a~~~~i~iv~G~~-~ 127 (345)
..+.++.+|||||+.|=.+. +..+ ........++..|.+++++++.-.. -
T Consensus 172 ~~~~la~~Ga~ii~~psa~p--~~~g---------------------------k~~~~~~l~~~rA~e~~~~vv~an~~G 222 (590)
T 3n05_A 172 RVPAARSAGAGLLLSVNASP--YERD---------------------------KDDTRLELVRKRAQEAGCTTAYLAMIG 222 (590)
T ss_dssp HHHHHHHTTCSEEEEEECCB--CCCC---------------------------SSCHHHHHHHHHHHHHTSEEEEEECEE
T ss_pred HHHHHHHcCCCEEEEecCCc--cccC---------------------------cHHHHHHHHHHHHHHhCCEEEEEeccc
Confidence 33445568999999986532 2200 0112345677888899999987543 2
Q ss_pred eeCCeeE-EEEEEECCCCceEee
Q 019166 128 RDGYTLY-CTVLFFDSQGHFLGK 149 (345)
Q Consensus 128 ~~~~~~y-Nt~~vi~p~G~ii~~ 149 (345)
..++..| =.+++++|+|+++..
T Consensus 223 ~~~~~~f~G~S~iidp~G~vla~ 245 (590)
T 3n05_A 223 GQDELVFDGDSIVVDRDGEVVAR 245 (590)
T ss_dssp EETTEEEEBCCEEECTTSCEEEE
T ss_pred CCCCeEEeCcEEEECCCCcEEEE
Confidence 2344444 456788999998765
No 31
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=51.09 E-value=1e+02 Score=27.12 Aligned_cols=59 Identities=10% Similarity=0.071 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCHHHHHHHHHHHhcCe
Q 019166 40 PATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYKV 119 (345)
Q Consensus 40 ~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~l~~~a~~~~i 119 (345)
+..++.+.+.++.|++-|++.|++|-. +. . .....+..+. +.++.+.+.|+++|+
T Consensus 104 ~~~~~~~~~~i~~A~~lG~~~v~~~~~--~~-~--------------~~~~~~~~~~--------~~l~~l~~~a~~~Gv 158 (303)
T 3l23_A 104 PKIMEYWKATAADHAKLGCKYLIQPMM--PT-I--------------TTHDEAKLVC--------DIFNQASDVIKAEGI 158 (303)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEECSC--CC-C--------------CSHHHHHHHH--------HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEECCC--CC-C--------------CCHHHHHHHH--------HHHHHHHHHHHHCCC
Confidence 667889999999999999999999732 10 0 1112222222 257888999999999
Q ss_pred E--EEE
Q 019166 120 Y--LVM 123 (345)
Q Consensus 120 ~--iv~ 123 (345)
. +.+
T Consensus 159 ~~~l~~ 164 (303)
T 3l23_A 159 ATGFGY 164 (303)
T ss_dssp TTCEEE
T ss_pred cceEEE
Confidence 8 654
No 32
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1
Probab=51.07 E-value=10 Score=33.73 Aligned_cols=42 Identities=19% Similarity=0.333 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCeEEEEeeEEe---eCCeeEEEEEEECCCCceEee
Q 019166 108 ERLAAMAGKYKVYLVMGVIER---DGYTLYCTVLFFDSQGHFLGK 149 (345)
Q Consensus 108 ~~l~~~a~~~~i~iv~G~~~~---~~~~~yNt~~vi~p~G~ii~~ 149 (345)
..++..|.+++++++.-...- ++...+=.+.+++|+|+++..
T Consensus 206 ~~~~~rA~en~~~vv~~n~~G~~~~~~~~~G~S~ii~p~G~vl~~ 250 (291)
T 1f89_A 206 LLARSRAVDNQVYVMLCSPARNLQSSYHAYGHSIVVDPRGKIVAE 250 (291)
T ss_dssp HHHHHHHHHHTSEEEEECCCCCTTSSSCBCCCCEEECTTSCEEEE
T ss_pred HHHHHHHHHcCCEEEEecCccCCCCCCeeeeEEEEECCCCCEEEe
Confidence 345666888999888754321 122345567899999998754
No 33
>2j6v_A UV endonuclease, UVDE; plasmid, TIM barrel, DNA repair, DNA binding protein, lyase; HET: KCX ALY; 1.55A {Thermus thermophilus} PDB: 3bzg_A 3c0s_A* 3c0l_A 3c0q_A* 3bzj_A
Probab=49.52 E-value=89 Score=27.94 Aligned_cols=82 Identities=20% Similarity=0.101 Sum_probs=52.8
Q ss_pred ceEEEEEeccCCCCCh--------------------HHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCccccccc
Q 019166 24 TVRATVVQASTIFYDT--------------------PATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGN 83 (345)
Q Consensus 24 ~~rIa~vQ~~~~~~d~--------------------~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~ 83 (345)
.||+|.+=+.... +. ..|++.+.+.++.+.+.|.+++=+.=-.++-|.
T Consensus 22 ~~rlG~~~~~~~~-~~~~~~t~~~~~~~~~~l~~~~~~nl~~l~~~l~~~~~~gi~~~ri~s~~f~~ft----------- 89 (301)
T 2j6v_A 22 MIRLGYPCENLTL-GATTNRTLRLAHLTEERVREKAAENLRDLERILRFNADHGFALFRIGQHLIPFAS----------- 89 (301)
T ss_dssp SEEEEEESEETTT-TEESCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEECCGGGSTTTT-----------
T ss_pred eeEEEEEEEeccC-CCCCccceeHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeccCcccccC-----------
Confidence 4788888666543 22 689999999999999999988877433333232
Q ss_pred CCccchHHHHHHHhcccCCCCHHHHHHHHHHHhcCeEEEEee
Q 019166 84 RTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYKVYLVMGV 125 (345)
Q Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~~l~~l~~~a~~~~i~iv~G~ 125 (345)
.||...... ... .+.++.+.++++++++.+++..
T Consensus 90 ~~~~~w~~~-~~~-------~~~~~~~~~~~~~~gi~i~~H~ 123 (301)
T 2j6v_A 90 HPLFPYDWE-GAY-------EEELARLGALARAFGQRLSMHP 123 (301)
T ss_dssp STTCCSCHH-HHH-------HHHHHHHHHHHHHTTCEEEECC
T ss_pred CCcccCCcC-CCC-------HHHHHHHHHHHHHcCCeEEEeC
Confidence 112211111 111 1357889999999999876643
No 34
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=48.06 E-value=29 Score=29.78 Aligned_cols=76 Identities=14% Similarity=0.169 Sum_probs=45.3
Q ss_pred eEEEEEeccCCCC--C---hHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccc-hHHHHHHHhc
Q 019166 25 VRATVVQASTIFY--D---TPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKG-KEEFRKYHAS 98 (345)
Q Consensus 25 ~rIa~vQ~~~~~~--d---~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 98 (345)
+++..+.....+. + .+..++.+.+.++.|+.-|++.|++. +|+... ..+ ...+..+.
T Consensus 60 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~v~~~----~g~~~~-----------~~~~~~~~~~~~-- 122 (278)
T 1i60_A 60 IKPLALNALVFFNNRDEKGHNEIITEFKGMMETCKTLGVKYVVAV----PLVTEQ-----------KIVKEEIKKSSV-- 122 (278)
T ss_dssp CEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHHHTCCEEEEE----CCBCSS-----------CCCHHHHHHHHH--
T ss_pred CCeeeeccccccccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEe----cCCCCC-----------CCCHHHHHHHHH--
Confidence 6666555443221 3 24668889999999999999988872 232200 011 11122221
Q ss_pred ccCCCCHHHHHHHHHHHhcCeEEEE
Q 019166 99 AIDVPGPEVERLAAMAGKYKVYLVM 123 (345)
Q Consensus 99 a~~~~~~~l~~l~~~a~~~~i~iv~ 123 (345)
+.++.+.+.|+++|+.+.+
T Consensus 123 ------~~l~~l~~~a~~~gv~l~l 141 (278)
T 1i60_A 123 ------DVLTELSDIAEPYGVKIAL 141 (278)
T ss_dssp ------HHHHHHHHHHGGGTCEEEE
T ss_pred ------HHHHHHHHHHHhcCCEEEE
Confidence 3577788888888987654
No 35
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=47.52 E-value=12 Score=32.87 Aligned_cols=42 Identities=24% Similarity=0.241 Sum_probs=27.4
Q ss_pred HHHHHHHHhcCeEEEEeeEE-ee--CCeeEEEEEEECCCCceEee
Q 019166 108 ERLAAMAGKYKVYLVMGVIE-RD--GYTLYCTVLFFDSQGHFLGK 149 (345)
Q Consensus 108 ~~l~~~a~~~~i~iv~G~~~-~~--~~~~yNt~~vi~p~G~ii~~ 149 (345)
..++..|.+++++++.-... .+ +...+=.+.+++|+|+++..
T Consensus 190 ~~~~~rA~en~~~vv~~n~~G~~~~~~~~~G~S~ii~p~G~v~~~ 234 (276)
T 2w1v_A 190 LLQRARAVDNQVYVATASPARDDKASYVAWGHSTVVDPWGQVLTK 234 (276)
T ss_dssp HHHHHHHHHHTCEEEEECCCCCTTSSSCCCCCCEEECTTSCEEEE
T ss_pred HHHHHHHHHcCcEEEEecccccCCCCceeeeEeEEECCCCCEeEE
Confidence 34566677899998875432 11 22344567889999998753
No 36
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=45.82 E-value=21 Score=33.75 Aligned_cols=69 Identities=13% Similarity=0.088 Sum_probs=40.8
Q ss_pred HHHHHHHCCCeEEEEcCCCC--h---h-----------hHhhhhhheeeecCeEEEEeCccc-ccCCCCCCCCCccCCCc
Q 019166 194 LRTAMYAKGIEIYCAPTADS--R---E-----------VWQASMTHIALEGGCFVLSANQFC-RRKDYPPPPEYEFSGTE 256 (345)
Q Consensus 194 ~~r~~~~~ga~li~~ps~~~--~---~-----------~~~~~~~~rA~en~~~vv~~n~~G-~~~~~~~~~~~~~~~~~ 256 (345)
+.+..+.+|||+|+.|=.+. . . .+...++..|.+++++++.....- .
T Consensus 38 li~~A~~~gadlvv~PE~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~G~~~~~e---------------- 101 (440)
T 1ems_A 38 MIERAGEKKCEMVFLPECFDFIGLNKNEQIDLAMATDCEYMEKYRELARKHNIWLSLGGLHHKD---------------- 101 (440)
T ss_dssp HHHHHHHTTCSEEEECTTCSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEE----------------
T ss_pred HHHHHHHCCCCEEECCCcccccCcchhHHHHhhccCCCHHHHHHHHHHHHcCeEEEeccccccc----------------
Confidence 44455678999999996542 1 1 122334556788999887653210 0
Q ss_pred CCCCCCCccccceeEEECCCCcccc
Q 019166 257 QDLTPDSIVCAGGSVIISPSGSVLA 281 (345)
Q Consensus 257 ~~~~~~~~~~~G~S~ii~p~G~vl~ 281 (345)
+ .++...+=.+.+++|+|+++.
T Consensus 102 ~---~~~~~~yNs~~~i~~~G~i~~ 123 (440)
T 1ems_A 102 P---SDAAHPWNTHLIIDSDGVTRA 123 (440)
T ss_dssp T---TEEEEEEEEEEEECTTSCEEE
T ss_pred c---CCCCcEEEEEEEECCCCcEEE
Confidence 0 001124445788899998764
No 37
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=43.25 E-value=67 Score=27.37 Aligned_cols=63 Identities=19% Similarity=0.169 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccch-HHHHHHHhcccCCCCHHHHHHHHHHHhc
Q 019166 39 TPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGK-EEFRKYHASAIDVPGPEVERLAAMAGKY 117 (345)
Q Consensus 39 ~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~l~~l~~~a~~~ 117 (345)
.+..++.+.+.++.|+.-|++.|+++=...+... .+. ..++.+. +.++.+.+.|+++
T Consensus 78 r~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~--------------~~~~~~~~~~~--------~~l~~l~~~a~~~ 135 (275)
T 3qc0_A 78 REKAIDDNRRAVDEAAELGADCLVLVAGGLPGGS--------------KNIDAARRMVV--------EGIAAVLPHARAA 135 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCEEEECBCCCTTC--------------CCHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCCCC--------------cCHHHHHHHHH--------HHHHHHHHHHHHc
Confidence 3567889999999999999998887622111000 111 1112221 3577888888898
Q ss_pred CeEEEE
Q 019166 118 KVYLVM 123 (345)
Q Consensus 118 ~i~iv~ 123 (345)
|+.+.+
T Consensus 136 gv~l~l 141 (275)
T 3qc0_A 136 GVPLAI 141 (275)
T ss_dssp TCCEEE
T ss_pred CCEEEE
Confidence 887655
No 38
>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}
Probab=42.50 E-value=1.1e+02 Score=26.44 Aligned_cols=27 Identities=11% Similarity=0.032 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEccC
Q 019166 39 TPATLGKAERLLAEAAGYGSQLVVFPE 65 (345)
Q Consensus 39 ~~~n~~~i~~~i~~A~~~gadliVfPE 65 (345)
.+..++.+.+.++.|+.-|++.|+++.
T Consensus 85 ~~~~~~~~~~~i~~a~~lG~~~v~~~~ 111 (301)
T 3cny_A 85 IEKASEAFEKHCQYLKAINAPVAVVSE 111 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEecC
Confidence 345678899999999999999988865
No 39
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=40.76 E-value=1.1e+02 Score=26.27 Aligned_cols=65 Identities=11% Similarity=0.133 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCHHHHHHHHHHHhcCe
Q 019166 40 PATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYKV 119 (345)
Q Consensus 40 ~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~l~~~a~~~~i 119 (345)
+..++.+.+.++.|..-|++.|+++ +|+... ....|.....+..+. +.++.+.+.|+++|+
T Consensus 100 ~~~~~~~~~~i~~a~~lGa~~v~~~----~g~~~~-------~~~~p~~~~~~~~~~--------~~l~~l~~~a~~~Gv 160 (287)
T 3kws_A 100 KECMDTMKEIIAAAGELGSTGVIIV----PAFNGQ-------VPALPHTMETRDFLC--------EQFNEMGTFAAQHGT 160 (287)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEC----SCCTTC-------CSBCCSSHHHHHHHH--------HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEe----cCcCCc-------CCCCCCHHHHHHHHH--------HHHHHHHHHHHHcCC
Confidence 5678889999999999999988875 222100 000011222222222 357888888999998
Q ss_pred EEEE
Q 019166 120 YLVM 123 (345)
Q Consensus 120 ~iv~ 123 (345)
.+.+
T Consensus 161 ~l~l 164 (287)
T 3kws_A 161 SVIF 164 (287)
T ss_dssp CEEE
T ss_pred EEEE
Confidence 7655
No 40
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=40.32 E-value=1.2e+02 Score=28.30 Aligned_cols=43 Identities=12% Similarity=0.160 Sum_probs=32.2
Q ss_pred ceEEEEEeccCC-------CCChHHHHHHHHHHHHHHHhCCCcEEEccCc
Q 019166 24 TVRATVVQASTI-------FYDTPATLGKAERLLAEAAGYGSQLVVFPEA 66 (345)
Q Consensus 24 ~~rIa~vQ~~~~-------~~d~~~n~~~i~~~i~~A~~~gadliVfPE~ 66 (345)
-+++.+++..+. ..+.+..++.+.+.|+.|++.|+++|+...+
T Consensus 77 GL~i~~i~s~~~~~~i~~~~~~r~~~ie~~k~~i~~aa~lGi~~v~~nf~ 126 (386)
T 3bdk_A 77 GLEITVIESIPVHEDIKQGKPNRDALIENYKTSIRNVGAAGIPVVCYNFM 126 (386)
T ss_dssp TCEEEEEECCCCCHHHHTTCTTHHHHHHHHHHHHHHHHTTTCCEEEECCC
T ss_pred CCEEEEEeccccccccccCcHHHHHHHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 377877754221 2346888999999999999999999997443
No 41
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Probab=40.18 E-value=1.1e+02 Score=26.80 Aligned_cols=41 Identities=7% Similarity=0.003 Sum_probs=27.4
Q ss_pred HHHHHHHhcCeEEEEeeE-EeeCC-eeEEEEEEECCCCceEee
Q 019166 109 RLAAMAGKYKVYLVMGVI-ERDGY-TLYCTVLFFDSQGHFLGK 149 (345)
Q Consensus 109 ~l~~~a~~~~i~iv~G~~-~~~~~-~~yNt~~vi~p~G~ii~~ 149 (345)
.++..|.+++++++.-.. -.+++ ..+=.+.+++|+|+++..
T Consensus 218 ~~~~rA~en~~~vv~~n~~G~~~~~~~~G~S~ii~p~G~vl~~ 260 (303)
T 1uf5_A 218 SMQAGSYQNGAWSAAAGKAGMEENCMLLGHSCIVAPTGEIVAL 260 (303)
T ss_dssp HHHHHHHHHTCEEEEEEBCEEETTEEECCCCEEECTTSCEEEE
T ss_pred HHHhhhhcCCcEEEEECcccccCCccccceeEEECCCCCEecc
Confidence 356678889999987543 22222 344457889999998754
No 42
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*
Probab=36.24 E-value=1.6e+02 Score=25.68 Aligned_cols=66 Identities=12% Similarity=0.040 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCc-cchHHHHHHHhcccCCCCHHHHHHHHHHHhcC
Q 019166 40 PATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTA-KGKEEFRKYHASAIDVPGPEVERLAAMAGKYK 118 (345)
Q Consensus 40 ~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~l~~l~~~a~~~~ 118 (345)
+..++.+.+.++.|+.-|++.|+.|=....|.... .. .....+..+. +.++.+.+.|+++|
T Consensus 103 ~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~g~~~~----------~~~~~~~~~~~~~--------~~l~~l~~~a~~~g 164 (309)
T 2hk0_A 103 AAGKAFFERTLSNVAKLDIHTIGGALHSYWPIDYS----------QPVDKAGDYARGV--------EGINGIADFANDLG 164 (309)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEECTTSCSSCCTT----------SCCCHHHHHHHHH--------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeeccccccccCC----------CcCChHHHHHHHH--------HHHHHHHHHHHHcC
Confidence 56788999999999999999998542111122100 00 1111122222 35777888888999
Q ss_pred eEEEE
Q 019166 119 VYLVM 123 (345)
Q Consensus 119 i~iv~ 123 (345)
+.+.+
T Consensus 165 v~l~l 169 (309)
T 2hk0_A 165 INLCI 169 (309)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 87654
No 43
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=36.08 E-value=28 Score=28.60 Aligned_cols=41 Identities=12% Similarity=0.087 Sum_probs=24.8
Q ss_pred cceEEEEEeccCC-CCChHHHHHHHHHHHHHHHhCCCcEEEccCc
Q 019166 23 PTVRATVVQASTI-FYDTPATLGKAERLLAEAAGYGSQLVVFPEA 66 (345)
Q Consensus 23 ~~~rIa~vQ~~~~-~~d~~~n~~~i~~~i~~A~~~gadliVfPE~ 66 (345)
.+|||....+.-. ..+.....+.+.++| .+.++|||+|.|.
T Consensus 2 ~~l~v~t~Ni~g~~~~~~~~r~~~i~~~i---~~~~pDIi~LQEv 43 (250)
T 4f1h_A 2 SKLSIISWNVDGLDTLNLADRARGLCSYL---ALYTPDVVFLQEL 43 (250)
T ss_dssp CCEEEEEEECCTTCCTTHHHHHHHHHHHH---HHHCCSEEEEEEE
T ss_pred CeEEEEEEEeCCCCCcCHHHHHHHHHHHH---HHcCCCEEEEEeC
Confidence 3577776555421 123344455555555 4468999999996
No 44
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=35.63 E-value=42 Score=27.73 Aligned_cols=41 Identities=2% Similarity=0.104 Sum_probs=24.1
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCC
Q 019166 24 TVRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIG 69 (345)
Q Consensus 24 ~~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~ 69 (345)
.|||.....+- .......+.+.++++ +.++|+|+|.|....
T Consensus 7 ~lri~t~Nv~g--~~~~~~~~~~~~~i~---~~~~DIv~LQE~~~~ 47 (238)
T 1vyb_A 7 HITILTLNING--LNSAIKRHRLASWIK---SQDPSVCCIQETHLT 47 (238)
T ss_dssp CEEEEEEECSC--CCSHHHHHHHHHHHH---HHCCSEEEEECCCCC
T ss_pred cceEEEEeccc--CCchhhHHHHHHHHH---HcCCCEEEEecccCC
Confidence 46766655542 222222344555554 458999999998543
No 45
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=35.09 E-value=47 Score=31.12 Aligned_cols=81 Identities=21% Similarity=0.273 Sum_probs=51.2
Q ss_pred ChHHHHHHHHHHHHHHHhCCCcEEEc----cCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCHHHHHHHHH
Q 019166 38 DTPATLGKAERLLAEAAGYGSQLVVF----PEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAM 113 (345)
Q Consensus 38 d~~~n~~~i~~~i~~A~~~gadliVf----PE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~l~~~ 113 (345)
+...++++..++++.|++.|||.|=| |+..++.|. . .|... +++....++ +++.. ....+.+..|.+.
T Consensus 38 NH~Gsle~A~~li~~Ak~aGAdavKfQ~~k~~tl~s~~~-~-~fq~~----~~~~~~~ye-~~~~~-~l~~e~~~~L~~~ 109 (385)
T 1vli_A 38 NHDGKLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDP-G-LYKTA----AGKDVSIFS-LVQSM-EMPAEWILPLLDY 109 (385)
T ss_dssp TTTTCHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------------CCCHHH-HGGGB-SSCGGGHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHhCCCEEeeeeeccCcccCcch-h-hhccC----CCCCccHHH-HHHhc-CCCHHHHHHHHHH
Confidence 45567999999999999999999988 666555543 0 01000 001111222 22221 2456789999999
Q ss_pred HHhcCeEEEEeeE
Q 019166 114 AGKYKVYLVMGVI 126 (345)
Q Consensus 114 a~~~~i~iv~G~~ 126 (345)
|++.|+.++....
T Consensus 110 ~~~~Gi~~~stpf 122 (385)
T 1vli_A 110 CREKQVIFLSTVC 122 (385)
T ss_dssp HHHTTCEEECBCC
T ss_pred HHHcCCcEEEccC
Confidence 9999999987644
No 46
>2vhh_A CG3027-PA; hydrolase; 2.8A {Drosophila melanogaster} PDB: 2vhi_A
Probab=34.18 E-value=34 Score=32.17 Aligned_cols=17 Identities=29% Similarity=0.296 Sum_probs=12.9
Q ss_pred HHHhCCCcEEEccCcCC
Q 019166 52 EAAGYGSQLVVFPEAFI 68 (345)
Q Consensus 52 ~A~~~gadliVfPE~~l 68 (345)
..+.+|||+|+.|=.|.
T Consensus 245 ~la~~GAdill~psa~~ 261 (405)
T 2vhh_A 245 MFGLNGAEIVFNPSATI 261 (405)
T ss_dssp HHHHTTCSEEEEEECCB
T ss_pred HHHHcCCCEEEEcccCC
Confidence 34567999999998653
No 47
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=33.83 E-value=1.7e+02 Score=25.14 Aligned_cols=60 Identities=8% Similarity=0.113 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccc-hHHHHHHHhcccCCCCHHHHHHHHHHHhc
Q 019166 39 TPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKG-KEEFRKYHASAIDVPGPEVERLAAMAGKY 117 (345)
Q Consensus 39 ~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~l~~l~~~a~~~ 117 (345)
.+..++.+.+.++.|+.-|++.|++. +|+. +.+ ...+..+. +.++.+.+.|+++
T Consensus 97 r~~~~~~~~~~i~~a~~lG~~~v~~~----~G~~-------------~~~~~~~~~~~~--------~~l~~l~~~a~~~ 151 (290)
T 3tva_A 97 RASRVAEMKEISDFASWVGCPAIGLH----IGFV-------------PESSSPDYSELV--------RVTQDLLTHAANH 151 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEC----CCCC-------------CCTTSHHHHHHH--------HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEc----CCCC-------------cccchHHHHHHH--------HHHHHHHHHHHHc
Confidence 46788999999999999999998874 3332 111 11122222 3578888889999
Q ss_pred CeEEEE
Q 019166 118 KVYLVM 123 (345)
Q Consensus 118 ~i~iv~ 123 (345)
|+.+.+
T Consensus 152 Gv~l~l 157 (290)
T 3tva_A 152 GQAVHL 157 (290)
T ss_dssp TCEEEE
T ss_pred CCEEEE
Confidence 988765
No 48
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=32.82 E-value=47 Score=30.08 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=21.3
Q ss_pred CeeEEEEEEECCCCceEeeeecCCCC
Q 019166 131 YTLYCTVLFFDSQGHFLGKHRKIMPT 156 (345)
Q Consensus 131 ~~~yNt~~vi~p~G~ii~~y~K~~l~ 156 (345)
+..+-+.++||++|.|...|+++.+.
T Consensus 99 ~~~~r~tfiId~~G~i~~~~~~v~~~ 124 (322)
T 4eo3_A 99 GKTVRSTFLIDRWGFVRKEWRRVKVE 124 (322)
T ss_dssp TEECCEEEEECTTSBEEEEEESCCST
T ss_pred CcCccEEEEECCCCEEEEEEeCCCcc
Confidence 45566889999999999999998653
No 49
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=32.54 E-value=99 Score=28.89 Aligned_cols=59 Identities=8% Similarity=0.102 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHhCCCcEEEccCcC--CCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCHHHHHHHHHHHhcCe
Q 019166 42 TLGKAERLLAEAAGYGSQLVVFPEAF--IGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKYKV 119 (345)
Q Consensus 42 n~~~i~~~i~~A~~~gadliVfPE~~--l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~l~~~a~~~~i 119 (345)
+.+...++++.+++.|+|+|.|-=+- .+.|.+ . ....+.+..+.+.+++.|+
T Consensus 154 s~e~a~~~a~~~k~aGa~~vk~q~fkprts~~~f-------------~-------------gl~~egl~~L~~~~~~~Gl 207 (385)
T 3nvt_A 154 SYEQVAAVAESIKAKGLKLIRGGAFKPRTSPYDF-------------Q-------------GLGLEGLKILKRVSDEYGL 207 (385)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSC-------------C-------------CCTHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHcCCCeEEcccccCCCChHhh-------------c-------------CCCHHHHHHHHHHHHHcCC
Confidence 57788888999999999999884331 011210 0 1112467889999999999
Q ss_pred EEEEeeE
Q 019166 120 YLVMGVI 126 (345)
Q Consensus 120 ~iv~G~~ 126 (345)
.++.-..
T Consensus 208 ~~~te~~ 214 (385)
T 3nvt_A 208 GVISEIV 214 (385)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9986543
No 50
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=32.31 E-value=46 Score=27.61 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=24.7
Q ss_pred cceEEEEEeccCC-CCChHHHHHHHHHHHHHHHhCCCcEEEccCc
Q 019166 23 PTVRATVVQASTI-FYDTPATLGKAERLLAEAAGYGSQLVVFPEA 66 (345)
Q Consensus 23 ~~~rIa~vQ~~~~-~~d~~~n~~~i~~~i~~A~~~gadliVfPE~ 66 (345)
.+|||....++-. ..+.....+.+.++| .+.++|||+|.|.
T Consensus 8 ~~l~v~swNi~g~~~~~~~~r~~~i~~~i---~~~~pDIi~LQEv 49 (256)
T 4gz1_A 8 STISFITWNIDGLDGCNLPERARGVCSCL---ALYSPDVVFLQEV 49 (256)
T ss_dssp GEEEEEEEECCTTCCTTHHHHHHHHHHHH---HHHCCSEEEEEEE
T ss_pred CcEEEEEEEcCCCcCcCHHHHHHHHHHHH---HHcCCCEEEEEcC
Confidence 4677777655421 112334444555555 4468999999996
No 51
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=31.50 E-value=1.3e+02 Score=25.47 Aligned_cols=39 Identities=28% Similarity=0.393 Sum_probs=26.7
Q ss_pred eEEEEEeccCCCC-ChHHHHHHHHHHHHHHHhCCCcEEEc
Q 019166 25 VRATVVQASTIFY-DTPATLGKAERLLAEAAGYGSQLVVF 63 (345)
Q Consensus 25 ~rIa~vQ~~~~~~-d~~~n~~~i~~~i~~A~~~gadliVf 63 (345)
+++..+....... ..+...+.+.+.++.|++-|++.|++
T Consensus 65 l~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~v~~ 104 (272)
T 2q02_A 65 LEIVTINAVYPFNQLTEEVVKKTEGLLRDAQGVGARALVL 104 (272)
T ss_dssp CEEEEEEEETTTTSCCHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred CeEEechhhhccCCcHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 6776555422111 12456788899999999999998886
No 52
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=27.80 E-value=1.4e+02 Score=25.08 Aligned_cols=25 Identities=32% Similarity=0.238 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEcc
Q 019166 40 PATLGKAERLLAEAAGYGSQLVVFP 64 (345)
Q Consensus 40 ~~n~~~i~~~i~~A~~~gadliVfP 64 (345)
+..++.+.+.++.|+.-|++.|++.
T Consensus 72 ~~~~~~~~~~i~~A~~lGa~~v~~~ 96 (254)
T 3ayv_A 72 GLTLRRLLFGLDRAAELGADRAVFH 96 (254)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEC
Confidence 5668889999999999999988774
No 53
>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413}
Probab=27.76 E-value=1.6e+02 Score=26.03 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEcc
Q 019166 40 PATLGKAERLLAEAAGYGSQLVVFP 64 (345)
Q Consensus 40 ~~n~~~i~~~i~~A~~~gadliVfP 64 (345)
+..++.+.+.++.|++.|++.|+-|
T Consensus 105 ~~~~~~~~~~i~~A~~lG~~~v~~~ 129 (335)
T 2qw5_A 105 QEALEYLKSRVDITAALGGEIMMGP 129 (335)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEecc
Confidence 4567889999999999999999655
No 54
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=26.67 E-value=93 Score=26.43 Aligned_cols=35 Identities=6% Similarity=0.059 Sum_probs=24.8
Q ss_pred eEEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEcc
Q 019166 25 VRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFP 64 (345)
Q Consensus 25 ~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfP 64 (345)
+++..+..... ...+.+.+.++.|..-|++.|+++
T Consensus 77 l~i~~~~~~~~-----~~~~~~~~~i~~A~~lGa~~v~~~ 111 (262)
T 3p6l_A 77 IKIVGTGVYVA-----EKSSDWEKMFKFAKAMDLEFITCE 111 (262)
T ss_dssp CEEEEEEEECC-----SSTTHHHHHHHHHHHTTCSEEEEC
T ss_pred CeEEEEeccCC-----ccHHHHHHHHHHHHHcCCCEEEec
Confidence 66666655432 134567788888999999998886
No 55
>3g12_A Putative lactoylglutathione lyase; glyoxalase, bleomycin resistance, PSI-2, NYSGXRC, structural genomics; 2.58A {Bdellovibrio bacteriovorus HD100}
Probab=26.54 E-value=1.2e+02 Score=22.49 Aligned_cols=43 Identities=12% Similarity=0.086 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCeE-EEEeeEEeeCCeeEEEEEEECCCCceEeeeec
Q 019166 107 VERLAAMAGKYKVY-LVMGVIERDGYTLYCTVLFFDSQGHFLGKHRK 152 (345)
Q Consensus 107 l~~l~~~a~~~~i~-iv~G~~~~~~~~~yNt~~vi~p~G~ii~~y~K 152 (345)
++.+.+.+++.|+. ++.+-.....|. + +++.||+|.++..+.+
T Consensus 77 vd~~~~~l~~~G~~~~~~~p~~~~~G~-~--~~~~DPdGn~iel~~~ 120 (128)
T 3g12_A 77 LEKTVQELVKIPGAMCILDPTDMPDGK-K--AIVLDPDGHSIELCEL 120 (128)
T ss_dssp HHHHHHHHTTSTTCEEEEEEEECC-CE-E--EEEECTTCCEEEEEC-
T ss_pred HHHHHHHHHHCCCceeccCceeCCCcc-E--EEEECCCCCEEEEEEe
Confidence 67777777788888 554422222332 2 8899999998766544
No 56
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=26.40 E-value=51 Score=26.29 Aligned_cols=43 Identities=9% Similarity=0.013 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCeEEEEeeEEeeCCe--eEEEEEEECCCCceEeeeecCCC
Q 019166 108 ERLAAMAGKYKVYLVMGVIERDGYT--LYCTVLFFDSQGHFLGKHRKIMP 155 (345)
Q Consensus 108 ~~l~~~a~~~~i~iv~G~~~~~~~~--~yNt~~vi~p~G~ii~~y~K~~l 155 (345)
+.+.++++.+|+.+.. .++. .-.+.++|+++|+|+..|....+
T Consensus 104 ~~~~~~~~~~g~~~~~-----~~~~~~~~~~~~lID~~G~i~~~~~g~~~ 148 (170)
T 3me7_A 104 EDLFKLLDAIDFRFMT-----AGNDFIHPNVVVVLSPELQIKDYIYGVNY 148 (170)
T ss_dssp HHHHHHHHHTTCCCEE-----ETTEEECCCEEEEECTTSBEEEEEESSSC
T ss_pred HHHHHHHHHCCeEEec-----CCCccccCceEEEECCCCeEEEEEeCCCC
Confidence 4677777777765543 1111 12357999999999888766543
No 57
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=26.35 E-value=1.2e+02 Score=26.24 Aligned_cols=20 Identities=5% Similarity=-0.162 Sum_probs=14.4
Q ss_pred HHHHHHHHhCCCcEEEccCc
Q 019166 47 ERLLAEAAGYGSQLVVFPEA 66 (345)
Q Consensus 47 ~~~i~~A~~~gadliVfPE~ 66 (345)
..+++...+.++|||+|.|.
T Consensus 33 ~~i~~~i~~~~~DIv~LQEv 52 (298)
T 3mpr_A 33 PVIAQMVQYHDFDIFGTQEC 52 (298)
T ss_dssp HHHHHHHHHTTCSEEEEESB
T ss_pred HHHHHHHHHcCCCEEEEeCC
Confidence 34444445579999999998
No 58
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=24.70 E-value=85 Score=27.67 Aligned_cols=26 Identities=12% Similarity=0.051 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEccC
Q 019166 40 PATLGKAERLLAEAAGYGSQLVVFPE 65 (345)
Q Consensus 40 ~~n~~~i~~~i~~A~~~gadliVfPE 65 (345)
+..++.+.+.++.|++-|++.|+.|=
T Consensus 110 ~~~~~~~~~~i~~A~~lGa~~v~~~~ 135 (316)
T 3qxb_A 110 SLGYQHLKRAIDMTAAMEVPATGMPF 135 (316)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEecC
Confidence 46678899999999999999998764
No 59
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=23.82 E-value=56 Score=27.52 Aligned_cols=43 Identities=9% Similarity=0.098 Sum_probs=26.7
Q ss_pred cceEEEEEeccCCC-CChHHHHHHHHHHHHHHHhCCCcEEEccCcCC
Q 019166 23 PTVRATVVQASTIF-YDTPATLGKAERLLAEAAGYGSQLVVFPEAFI 68 (345)
Q Consensus 23 ~~~rIa~vQ~~~~~-~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l 68 (345)
.+|||+...+.-.. .+....++++.+.|+ +.++|+|+|.|...
T Consensus 2 ~~l~v~t~Ni~~~~~~~~~~~~~~i~~~i~---~~~~DIi~LQEv~~ 45 (266)
T 3teb_A 2 NAMKILTVNVHAWLEENQMEKIDILARTIA---EKQYDVIAMQEVNQ 45 (266)
T ss_dssp -CEEEEEEECCTTCSTTHHHHHHHHHHHHH---HHTCSEEEEEEEEE
T ss_pred CceEEEEEecccccCcchhHHHHHHHHHHH---hcCCCEEEEEEccc
Confidence 35777776654321 234455566666654 45899999999843
No 60
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=23.66 E-value=87 Score=26.59 Aligned_cols=57 Identities=14% Similarity=0.100 Sum_probs=38.2
Q ss_pred eEEEEEeccCCCCChHHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCC
Q 019166 25 VRATVVQASTIFYDTPATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPG 104 (345)
Q Consensus 25 ~rIa~vQ~~~~~~d~~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 104 (345)
+++..+..... ..++.+.+.++.|+.-|++.|+++ ++ .
T Consensus 75 l~i~~~~~~~~-----~~~~~~~~~i~~A~~lGa~~v~~~----p~---------------------------------~ 112 (257)
T 3lmz_A 75 VTGYAVGPIYM-----KSEEEIDRAFDYAKRVGVKLIVGV----PN---------------------------------Y 112 (257)
T ss_dssp CEEEEEEEEEE-----CSHHHHHHHHHHHHHHTCSEEEEE----EC---------------------------------G
T ss_pred CeEEEEecccc-----CCHHHHHHHHHHHHHhCCCEEEec----CC---------------------------------H
Confidence 55555444321 346778888888888888888863 11 0
Q ss_pred HHHHHHHHHHHhcCeEEEE
Q 019166 105 PEVERLAAMAGKYKVYLVM 123 (345)
Q Consensus 105 ~~l~~l~~~a~~~~i~iv~ 123 (345)
+.++.+.+.|+++|+.+.+
T Consensus 113 ~~l~~l~~~a~~~gv~l~l 131 (257)
T 3lmz_A 113 ELLPYVDKKVKEYDFHYAI 131 (257)
T ss_dssp GGHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHHcCCEEEE
Confidence 2467788899999987653
No 61
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=23.45 E-value=2.8e+02 Score=23.67 Aligned_cols=66 Identities=14% Similarity=0.118 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEccCcCCCCCCCCCCcccccccCCccch-HHHHHHHhcccCCCCHHHHHHHHHHHhcC
Q 019166 40 PATLGKAERLLAEAAGYGSQLVVFPEAFIGGYPRGANFGVTIGNRTAKGK-EEFRKYHASAIDVPGPEVERLAAMAGKYK 118 (345)
Q Consensus 40 ~~n~~~i~~~i~~A~~~gadliVfPE~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~l~~l~~~a~~~~ 118 (345)
+..++.+.+.++.|..-|++.|+.+= .+|++.. + ....+. ..++.+. +.++.+.+.|+++|
T Consensus 84 ~~~~~~~~~~i~~a~~lG~~~v~~~~--~~~~~~~--~------~~~~~~~~~~~~~~--------~~l~~l~~~a~~~G 145 (294)
T 3vni_A 84 KNAKAFYTDLLKRLYKLDVHLIGGAL--YSYWPID--Y------TKTIDKKGDWERSV--------ESVREVAKVAEACG 145 (294)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEST--TSCSSCC--T------TSCCCHHHHHHHHH--------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCCCeeeccc--cCCCCCc--C------CCCCCHHHHHHHHH--------HHHHHHHHHHHHcC
Confidence 46788899999999999999997421 1222100 0 000111 1122222 35778888888999
Q ss_pred eEEEE
Q 019166 119 VYLVM 123 (345)
Q Consensus 119 i~iv~ 123 (345)
+.+.+
T Consensus 146 v~l~l 150 (294)
T 3vni_A 146 VDFCL 150 (294)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 87654
No 62
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=23.29 E-value=2e+02 Score=22.86 Aligned_cols=25 Identities=8% Similarity=0.061 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHhCCCcEEEc
Q 019166 39 TPATLGKAERLLAEAAGYGSQLVVF 63 (345)
Q Consensus 39 ~~~n~~~i~~~i~~A~~~gadliVf 63 (345)
.+...+.+.++++.+.+.++.+|++
T Consensus 112 ~~~~~~~l~~~i~~~~~~~~~vil~ 136 (216)
T 3rjt_A 112 IDEYRDTLRHLVATTKPRVREMFLL 136 (216)
T ss_dssp HHHHHHHHHHHHHHHGGGSSEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 4556667777777777779999988
No 63
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=23.14 E-value=39 Score=18.20 Aligned_cols=16 Identities=19% Similarity=0.204 Sum_probs=13.6
Q ss_pred eeEEECCCCcccccCC
Q 019166 269 GSVIISPSGSVLAGPN 284 (345)
Q Consensus 269 ~S~ii~p~G~vl~~~~ 284 (345)
.|.|+|.+|+++....
T Consensus 6 ss~IYD~~g~~i~~lg 21 (26)
T 2v2f_A 6 SSKIYDNKNQLIADLG 21 (26)
T ss_pred CCEEEeCCCCEeeecc
Confidence 3899999999998764
No 64
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=22.52 E-value=55 Score=30.22 Aligned_cols=76 Identities=8% Similarity=0.113 Sum_probs=47.5
Q ss_pred ChHHHHHHHHHHHHHHHhCCCc-----EEEcc----CcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCHHHH
Q 019166 38 DTPATLGKAERLLAEAAGYGSQ-----LVVFP----EAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVE 108 (345)
Q Consensus 38 d~~~n~~~i~~~i~~A~~~gad-----liVfP----E~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~ 108 (345)
+-..+++...++|+.|++.|+| .|=|. |...+.... + ......+..+.+. ....+.+.
T Consensus 15 NHnGdle~Ak~lI~~A~~aGad~~~d~avKfQt~~~d~l~~~~~~--------~---~~~~~~~~~~~~~--el~~e~~~ 81 (350)
T 3g8r_A 15 NHMGNVEHGVALIRAIRESCQGFDFDFGFKLQYRNLDTFIHSSFK--------G---RDDVKYVKRFEET--RLQPEQMQ 81 (350)
T ss_dssp TTTTCSHHHHHHHHHHHHHTTTCCSEEEEEEEECCHHHHBCGGGT--------T---CCSSSSHHHHHHT--CCCHHHHH
T ss_pred CccCcHHHHHHHHHHHHHhCCcccCCeeEEccccchhhhcChhcc--------C---ccHHHHHHHHHHh--cCCHHHHH
Confidence 5566789999999999888887 77774 332221100 0 0011112222221 34557889
Q ss_pred HHHHHHHhcCeEEEEeeE
Q 019166 109 RLAAMAGKYKVYLVMGVI 126 (345)
Q Consensus 109 ~l~~~a~~~~i~iv~G~~ 126 (345)
.|.+.|++.|+.++....
T Consensus 82 ~L~~~~~~~Gi~~~st~f 99 (350)
T 3g8r_A 82 KLVAEMKANGFKAICTPF 99 (350)
T ss_dssp HHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHcCCcEEeccC
Confidence 999999999999988755
No 65
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=21.95 E-value=1.5e+02 Score=27.17 Aligned_cols=58 Identities=17% Similarity=0.180 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEc----cCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCHHHHHHHHHHHh
Q 019166 41 ATLGKAERLLAEAAGYGSQLVVF----PEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGK 116 (345)
Q Consensus 41 ~n~~~i~~~i~~A~~~gadliVf----PE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~l~~~a~~ 116 (345)
++.+.+.++++.+++.|+|++-| |..+..+|- | ...+.++.+++.+++
T Consensus 117 es~e~a~~~a~~~k~aGa~~vr~q~fKprTs~~~f~---------g-------------------lg~egl~~l~~~~~e 168 (350)
T 1vr6_A 117 EGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQ---------G-------------------LGEKGLEYLREAADK 168 (350)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEECBSCCCCCSTTSCC---------C-------------------CTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCeeeeeEEeCCCChHhhc---------C-------------------CCHHHHHHHHHHHHH
Confidence 45788889999999999999876 555332221 0 012467888999999
Q ss_pred cCeEEEEeeE
Q 019166 117 YKVYLVMGVI 126 (345)
Q Consensus 117 ~~i~iv~G~~ 126 (345)
.|+.++.-..
T Consensus 169 ~Gl~~~te~~ 178 (350)
T 1vr6_A 169 YGMYVVTEAL 178 (350)
T ss_dssp HTCEEEEECS
T ss_pred cCCcEEEEeC
Confidence 9999877544
No 66
>2gx8_A NIF3-related protein; structural genomics, unknown function, protein structure initiative, midwest center for structural genomics, MCSG; HET: EPE; 2.20A {Bacillus cereus} SCOP: c.135.1.1
Probab=21.82 E-value=98 Score=29.05 Aligned_cols=53 Identities=9% Similarity=0.073 Sum_probs=37.5
Q ss_pred EEEeecCCCchHHHHHHHHCCCeEEEE--cCCCC------hhhHhhhhhheeeecCeEEEEe
Q 019166 182 GAAICWENRMPLLRTAMYAKGIEIYCA--PTADS------REVWQASMTHIALEGGCFVLSA 235 (345)
Q Consensus 182 gv~IC~D~~fpe~~r~~~~~ga~li~~--ps~~~------~~~~~~~~~~rA~en~~~vv~~ 235 (345)
++++|-|.. +++..+...+|||+|+. |--+. ...|......++++|++.+.++
T Consensus 66 ~Vl~alD~t-~~Vv~eAi~~gadlIItHHPlif~~lk~i~~~~~~~r~i~~li~~~Iavya~ 126 (397)
T 2gx8_A 66 HVLIALDVT-EEVVDEAIQLGANVIIAHHPLIFNPLKAIHTDKAYGKIIEKCIKNDIAIYAA 126 (397)
T ss_dssp EEEEESSCC-HHHHHHHHHHTCCEEEESSCSCCSCCSCCCTTSHHHHHHHHHHHTTCEEEEC
T ss_pred EEEEEEcCC-HHHHHHHHHCCCCEEEECCccccCCccccCcCcHHHHHHHHHHHCCCeEEEe
Confidence 568888865 56777888899999999 54442 3344555566788888877665
No 67
>1xla_A D-xylose isomerase; isomerase(intramolecular oxidoreductase); 2.30A {Arthrobacter SP} SCOP: c.1.15.3 PDB: 1die_A* 1did_A 1xlb_A 1xlc_A* 1xld_A* 1xle_A 1xlf_A* 1xlg_A* 1xlh_A 1xli_A* 1xlj_A* 1xlk_A 1xll_A 1xlm_A* 4xia_A* 5xia_A*
Probab=20.97 E-value=1.9e+02 Score=26.56 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEc
Q 019166 40 PATLGKAERLLAEAAGYGSQLVVF 63 (345)
Q Consensus 40 ~~n~~~i~~~i~~A~~~gadliVf 63 (345)
+..++.+.+.++.|++-|++.|++
T Consensus 112 ~~~i~~~~~~i~~A~~LGa~~vvv 135 (394)
T 1xla_A 112 RFALAKVLHNIDLAAEMGAETFVM 135 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEE
Confidence 567889999999999999998876
No 68
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=20.96 E-value=95 Score=28.61 Aligned_cols=80 Identities=10% Similarity=0.091 Sum_probs=49.6
Q ss_pred ChHHHHHHHHHHHHHHHhCCCcEEEc----cCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCHHHHHHHHH
Q 019166 38 DTPATLGKAERLLAEAAGYGSQLVVF----PEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAM 113 (345)
Q Consensus 38 d~~~n~~~i~~~i~~A~~~gadliVf----PE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~l~~~ 113 (345)
+..++++...++++.|++.|||.|=| |+..++.|. . .|. +. +. ....++.+.. . ....+.+..|.+.
T Consensus 29 NH~gs~e~a~~li~~ak~aGadavKfq~~k~~tl~s~~~-~-~fq---~~-~~-~~~~y~~~~~-~-~l~~e~~~~L~~~ 99 (349)
T 2wqp_A 29 NHEGSLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEA-K-QVI---PG-NA-DVSIYEIMER-C-ALNEEDEIKLKEY 99 (349)
T ss_dssp TTTTCHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGG-G-GCC---CT-TC-SSCHHHHHHH-H-CCCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhCCCEEeeeecccccccCcch-h-ccc---cC-CC-CccHHHHHHH-h-CCCHHHHHHHHHH
Confidence 34567999999999999999999988 454434332 0 000 00 00 1111111111 1 2345788999999
Q ss_pred HHhcCeEEEEeeE
Q 019166 114 AGKYKVYLVMGVI 126 (345)
Q Consensus 114 a~~~~i~iv~G~~ 126 (345)
|++.|+.++.-..
T Consensus 100 ~~~~Gi~~~st~~ 112 (349)
T 2wqp_A 100 VESKGMIFISTLF 112 (349)
T ss_dssp HHHTTCEEEEEEC
T ss_pred HHHhCCeEEEeeC
Confidence 9999999987654
No 69
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=20.73 E-value=50 Score=29.20 Aligned_cols=43 Identities=16% Similarity=0.098 Sum_probs=26.2
Q ss_pred CCCcceEEEEEeccCCC----------------------------CChHHHHHHHHHHHHHHHhCCCcEEE
Q 019166 20 SSAPTVRATVVQASTIF----------------------------YDTPATLGKAERLLAEAAGYGSQLVV 62 (345)
Q Consensus 20 ~~~~~~rIa~vQ~~~~~----------------------------~d~~~n~~~i~~~i~~A~~~gadliV 62 (345)
.+.++.|||++|+-... .+.+.+..+...++++...+++|+||
T Consensus 4 ~~~~~~~igi~q~~~hp~ld~~~~G~~~~L~~~G~~~g~nv~~~~~~a~gd~~~~~~~~~~l~~~~~DlIi 74 (302)
T 3lkv_A 4 IMAKTAKVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLV 74 (302)
T ss_dssp ---CCEEEEEEESCCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHTTCCSEEE
T ss_pred hhcCCceEEEEEeecChhHHHHHHHHHHHHHhhCcccCCcEEEEEEeCCCCHHHHHHHHHHHHhcCCcEEE
Confidence 45678999999975310 01123455566667777778899887
No 70
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=20.50 E-value=1.8e+02 Score=25.34 Aligned_cols=57 Identities=16% Similarity=0.172 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhCCCcEEEc----cCcCCCCCCCCCCcccccccCCccchHHHHHHHhcccCCCCHHHHHHHHHHHhc
Q 019166 42 TLGKAERLLAEAAGYGSQLVVF----PEAFIGGYPRGANFGVTIGNRTAKGKEEFRKYHASAIDVPGPEVERLAAMAGKY 117 (345)
Q Consensus 42 n~~~i~~~i~~A~~~gadliVf----PE~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~l~~~a~~~ 117 (345)
+.+...++++.+++.|+|+|-| |..+ .|.+- | ...+.++.+++.+++.
T Consensus 35 ~~e~a~~~a~~l~~~Ga~~vk~~~fkprts--~~~~~-------g-------------------~~~egl~~l~~~~~~~ 86 (262)
T 1zco_A 35 SREQIMKVAEFLAEVGIKVLRGGAFKPRTS--PYSFQ-------G-------------------YGEKALRWMREAADEY 86 (262)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECBSSCCCSS--TTSCC-------C-------------------CTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEecccCCC--ccccc-------C-------------------ccHHHHHHHHHHHHHc
Confidence 3788888888889999999877 4332 22210 0 0124578889999999
Q ss_pred CeEEEEeeE
Q 019166 118 KVYLVMGVI 126 (345)
Q Consensus 118 ~i~iv~G~~ 126 (345)
|+.++.-..
T Consensus 87 Gl~~~te~~ 95 (262)
T 1zco_A 87 GLVTVTEVM 95 (262)
T ss_dssp TCEEEEECC
T ss_pred CCcEEEeeC
Confidence 999887654
No 71
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=20.29 E-value=94 Score=28.39 Aligned_cols=42 Identities=5% Similarity=0.046 Sum_probs=24.0
Q ss_pred CcceEEEEEeccCC-CCChHHHHHHHHHHHHHHHhCCCcEEEccCc
Q 019166 22 APTVRATVVQASTI-FYDTPATLGKAERLLAEAAGYGSQLVVFPEA 66 (345)
Q Consensus 22 ~~~~rIa~vQ~~~~-~~d~~~n~~~i~~~i~~A~~~gadliVfPE~ 66 (345)
...|||....++-. ..+.....+.+.++| .+.++|||+|.|.
T Consensus 117 ~~~lkVlSWNI~Gl~~~~~~~R~~~I~~~I---~~~~PDIV~LQEv 159 (362)
T 4gew_A 117 GFEVSVMSWNIDGLDGRSLLTRMKAVAHIV---KNVNPDILFLQEV 159 (362)
T ss_dssp TCEEEEEEEECCTTCCTTHHHHHHHHHHHH---HHHCCSEEEEEEE
T ss_pred CCeEEEEEEEeCCCCCcCHHHHHHHHHHHH---HHcCCCEEEEEcC
Confidence 33466666554311 112334444455555 4568999999997
No 72
>3sk2_A EHPR; antibiotic resistance, griseoluteate-binding protein; HET: GRI; 1.01A {Pantoea agglomerans} PDB: 3sk1_A*
Probab=20.25 E-value=2.6e+02 Score=20.41 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHh---cCeEEEEeeEEeeCCeeEEEEEEECCCCceEeeee
Q 019166 105 PEVERLAAMAGK---YKVYLVMGVIERDGYTLYCTVLFFDSQGHFLGKHR 151 (345)
Q Consensus 105 ~~l~~l~~~a~~---~~i~iv~G~~~~~~~~~yNt~~vi~p~G~ii~~y~ 151 (345)
+.++.+.+.+++ .|+.++.+-.....| ..+++.||+|..+..+.
T Consensus 84 ~dv~~~~~~l~~~~~~G~~~~~~p~~~~~g---~~~~~~DPdGn~iel~~ 130 (132)
T 3sk2_A 84 EDVDKLFNEWTKQKSHQIIVIKEPYTDVFG---RTFLISDPDGHIIRVCP 130 (132)
T ss_dssp HHHHHHHHHHHHCSSSCCEEEEEEEEETTE---EEEEEECTTCCEEEEEE
T ss_pred HHHHHHHHHHHhhhcCCCEEeeCCcccCce---EEEEEECCCCCEEEEEe
Confidence 346777777777 899887664444333 56789999998776553
Done!