BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019167
(345 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GNI|A Chain A, Structure Of Strad And Mo25
pdb|2WTK|A Chain A, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
pdb|2WTK|D Chain D, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
Length = 341
Score = 260 bits (664), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 150/323 (46%), Positives = 209/323 (64%), Gaps = 4/323 (1%)
Query: 1 MSFSFFKPSRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGD 60
M F F K K+P ++VK K S+ L+ + + + KA EKA EE+ KN V M+ +L G
Sbjct: 1 MPFPFGKSH--KSPADIVKNLKESMAVLEKQDISDKKA-EKATEEVSKNLVAMKEILYGT 57
Query: 61 GEVEPNADQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCV 120
E EP + V QLA E+ +L LV L ++ +E +KD+ ++ +L++++ + V
Sbjct: 58 NEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTV 117
Query: 121 QFIENHFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELPT 180
++I +L L+ Y++ E+AL+CGIMLRECI+ LA+ IL S F FF++VE+ T
Sbjct: 118 EYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMST 177
Query: 181 FDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFL 240
FD+ASDAF+TFKDLLT+H + +E+L HYD FF YEKLL S NYVT+RQSLKLL E L
Sbjct: 178 FDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELL 237
Query: 241 LEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVFVANPNKPHEVKVILAK 300
L+ N IM +YI + LK+MM LL+D S+NIQ AFH+FKVFVANPNK + IL K
Sbjct: 238 LDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLK 297
Query: 301 NHEKLLELLRNLSVGKGADDDQF 323
N KL+E L + +D+QF
Sbjct: 298 NQAKLIEFLSKFQNDR-TEDEQF 319
>pdb|3ZHP|A Chain A, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|B Chain B, Human Mst3 (stk24) In Complex With Mo25beta
Length = 340
Score = 258 bits (660), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 140/312 (44%), Positives = 201/312 (64%), Gaps = 5/312 (1%)
Query: 12 KTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVL 71
K P E+VK K +L L+ + K +KA EE+ K+ M+ +L G E EP + V
Sbjct: 15 KNPAEIVKILKDNLAILEKQD----KKTDKASEEVSKSLQAMKEILCGTNEKEPPTEAVA 70
Query: 72 QLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLD 131
QLA E+ +L+ L+ L ++ +E +KD+ ++ +L++++ + V++I H +L
Sbjct: 71 QLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVEYISAHPHILF 130
Query: 132 FLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTF 191
L+ Y+ ++AL CGIMLRECI+ LA+ IL S F FFK+VEL TFD+ASDAF+TF
Sbjct: 131 MLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTFDIASDAFATF 190
Query: 192 KDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKR 251
KDLLT+H +V+++L +YD F+ YEKLL S NYVT+RQSLKLL E +L+ N IM +
Sbjct: 191 KDLLTRHKVLVADFLEQNYDTIFEDYEKLLQSENYVTKRQSLKLLGELILDRHNFAIMTK 250
Query: 252 YILEVRFLKVMMTLLKDSSKNIQISAFHIFKVFVANPNKPHEVKVILAKNHEKLLELLRN 311
YI + LK+MM LL+D S NIQ AFH+FKVFVA+P+K + IL KN KL+E L +
Sbjct: 251 YISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPIVEILLKNQPKLIEFLSS 310
Query: 312 LSVGKGADDDQF 323
+ DD+QF
Sbjct: 311 FQKER-TDDEQF 321
>pdb|1UPK|A Chain A, Crystal Structure Of Mo25 In Complex With A C-Terminal
Peptide Of Strad
pdb|1UPL|A Chain A, Crystal Structure Of Mo25 Alpha
pdb|1UPL|B Chain B, Crystal Structure Of Mo25 Alpha
Length = 341
Score = 235 bits (600), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 141/312 (45%), Positives = 198/312 (63%), Gaps = 2/312 (0%)
Query: 12 KTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVL 71
K+P ++VK K S L+ + + + KA EKA EE+ KN V + +L G E EP + V
Sbjct: 10 KSPADIVKNLKESXAVLEKQDISDKKA-EKATEEVSKNLVAXKEILYGTNEKEPQTEAVA 68
Query: 72 QLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLD 131
QLA E+ +L LV L ++ +E +KD+ ++ +L++++ + V++I +L
Sbjct: 69 QLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILF 128
Query: 132 FLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTF 191
L+ Y++ E+AL+CGI LRECI+ LA+ IL S F FF++VE TFD+ASDAF+TF
Sbjct: 129 XLLKGYESPEIALNCGIXLRECIRHEPLAKIILWSEQFYDFFRYVEXSTFDIASDAFATF 188
Query: 192 KDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKR 251
KDLLT+H + +E+L HYD FF YEKLL S NYVT+RQSLKLL E LL+ N I +
Sbjct: 189 KDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIXTK 248
Query: 252 YILEVRFLKVMMTLLKDSSKNIQISAFHIFKVFVANPNKPHEVKVILAKNHEKLLELLRN 311
YI + LK+ LL+D S+NIQ AFH+FKVFVANPNK + IL KN KL+E L
Sbjct: 249 YISKPENLKLXXNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSK 308
Query: 312 LSVGKGADDDQF 323
+ +D+QF
Sbjct: 309 FQNDR-TEDEQF 319
>pdb|3UG6|A Chain A, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG6|B Chain B, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG6|C Chain C, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG6|D Chain D, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG7|A Chain A, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG7|B Chain B, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG7|C Chain C, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
pdb|3UG7|D Chain D, Crystal Structure Of Get3 From Methanocaldococcus
Jannaschii
Length = 349
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 147 GIMLRECIKFPSLARYILESASFELFFKFVELPTFDV 183
G ML + ++ +L+ ESA+F++F K+++ FDV
Sbjct: 118 GEMLEDQLEMAALSPGTDESAAFDVFLKYMDSNEFDV 154
>pdb|1BD3|D Chain D, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|C Chain C, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|B Chain B, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|A Chain A, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD4|D Chain D, Uprt-Uracil Complex
pdb|1BD4|C Chain C, Uprt-Uracil Complex
pdb|1BD4|B Chain B, Uprt-Uracil Complex
pdb|1BD4|A Chain A, Uprt-Uracil Complex
pdb|1JLS|B Chain B, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|A Chain A, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|D Chain D, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|C Chain C, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLR|A Chain A, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|B Chain B, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|D Chain D, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|C Chain C, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
Length = 243
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 219 KLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKD 268
KLL Y T Q +L + + PN +MK + L+ MMT+++D
Sbjct: 8 KLLVDPRYSTNDQEESILQDIITRFPNVVLMK----QTAQLRAMMTIIRD 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,100,001
Number of Sequences: 62578
Number of extensions: 351831
Number of successful extensions: 1191
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1182
Number of HSP's gapped (non-prelim): 21
length of query: 345
length of database: 14,973,337
effective HSP length: 100
effective length of query: 245
effective length of database: 8,715,537
effective search space: 2135306565
effective search space used: 2135306565
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)