Query 019167
Match_columns 345
No_of_seqs 129 out of 227
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 07:14:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019167.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019167hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08569 Mo25: Mo25-like; Int 100.0 4E-126 8E-131 928.2 30.2 333 1-339 1-335 (335)
2 KOG1566 Conserved protein Mo25 100.0 1E-121 3E-126 878.1 32.6 339 3-342 1-341 (342)
3 KOG1566 Conserved protein Mo25 92.1 0.3 6.5E-06 48.7 5.8 147 126-285 37-194 (342)
4 cd00020 ARM Armadillo/beta-cat 89.5 1.5 3.2E-05 34.7 6.7 110 167-282 7-116 (120)
5 PF10508 Proteasom_PSMB: Prote 88.4 9.4 0.0002 39.9 13.4 158 126-290 75-235 (503)
6 PF12348 CLASP_N: CLASP N term 87.6 2.6 5.7E-05 38.3 7.8 204 91-306 17-227 (228)
7 PF08064 UME: UME (NUC010) dom 83.6 2 4.3E-05 35.8 4.6 77 203-287 2-84 (107)
8 cd00020 ARM Armadillo/beta-cat 83.4 9 0.00019 30.0 8.2 97 140-239 21-118 (120)
9 PF12717 Cnd1: non-SMC mitotic 83.1 11 0.00024 33.6 9.6 86 183-284 4-90 (178)
10 PLN03200 cellulose synthase-in 83.0 24 0.00052 43.4 14.5 200 78-291 527-728 (2102)
11 KOG0946 ER-Golgi vesicle-tethe 80.2 23 0.0005 39.7 12.1 166 67-280 21-189 (970)
12 PF08767 CRM1_C: CRM1 C termin 76.8 66 0.0014 31.8 13.4 158 83-240 73-243 (319)
13 PLN03200 cellulose synthase-in 76.0 88 0.0019 38.9 16.2 191 74-282 439-634 (2102)
14 KOG1525 Sister chromatid cohes 73.6 2E+02 0.0044 34.2 18.5 261 11-294 16-338 (1266)
15 PF11262 Tho2: Transcription f 72.1 1E+02 0.0022 30.2 15.0 170 40-241 73-256 (298)
16 KOG1058 Vesicle coat complex C 68.3 1.1E+02 0.0024 34.5 13.5 228 50-308 38-301 (948)
17 PF10508 Proteasom_PSMB: Prote 68.0 1.6E+02 0.0035 30.8 20.5 244 77-339 198-465 (503)
18 PF12783 Sec7_N: Guanine nucle 65.6 83 0.0018 27.6 10.3 134 97-244 4-149 (168)
19 PF15087 DUF4551: Protein of u 64.3 28 0.0006 37.9 8.0 213 16-241 373-614 (617)
20 PF03224 V-ATPase_H_N: V-ATPas 63.4 36 0.00077 33.1 8.2 111 168-282 106-223 (312)
21 KOG0946 ER-Golgi vesicle-tethe 63.0 71 0.0015 36.1 10.9 129 66-201 106-246 (970)
22 PF08569 Mo25: Mo25-like; Int 62.5 1.3E+02 0.0029 30.1 12.2 140 73-215 156-304 (335)
23 PF12717 Cnd1: non-SMC mitotic 61.3 40 0.00086 30.1 7.5 81 168-252 64-151 (178)
24 PF13646 HEAT_2: HEAT repeats; 58.4 19 0.00041 27.2 4.4 53 212-278 31-84 (88)
25 PF13646 HEAT_2: HEAT repeats; 57.3 8.1 0.00018 29.3 2.1 51 220-284 8-58 (88)
26 smart00802 UME Domain in UVSB 51.7 39 0.00085 28.5 5.4 77 203-287 2-84 (107)
27 PF05952 ComX: Bacillus compet 51.0 11 0.00024 28.7 1.8 19 119-137 5-23 (57)
28 PF01602 Adaptin_N: Adaptin N 50.1 2.9E+02 0.0063 28.0 14.7 82 208-298 335-419 (526)
29 KOG1992 Nuclear export recepto 44.8 2.2E+02 0.0048 32.5 11.1 73 203-278 225-309 (960)
30 PF12348 CLASP_N: CLASP N term 43.5 1.5E+02 0.0032 26.7 8.4 155 177-336 17-184 (228)
31 KOG1655 Protein involved in va 39.9 1.2E+02 0.0026 28.8 7.1 68 3-79 3-70 (218)
32 PF06757 Ins_allergen_rp: Inse 39.5 74 0.0016 28.6 5.7 65 158-227 23-90 (179)
33 PF12231 Rif1_N: Rap1-interact 38.3 2.5E+02 0.0055 28.2 9.8 114 212-337 232-350 (372)
34 PF07304 SRA1: Steroid recepto 36.6 68 0.0015 28.7 4.9 43 40-82 64-106 (157)
35 PF03224 V-ATPase_H_N: V-ATPas 36.0 86 0.0019 30.4 5.9 126 182-311 25-157 (312)
36 KOG0166 Karyopherin (importin) 35.3 4.6E+02 0.01 28.2 11.5 207 89-300 122-363 (514)
37 PF01365 RYDR_ITPR: RIH domain 35.0 84 0.0018 28.6 5.4 53 183-241 115-169 (207)
38 PF08767 CRM1_C: CRM1 C termin 34.8 4.6E+02 0.0099 25.9 12.6 147 185-332 138-313 (319)
39 PF06371 Drf_GBD: Diaphanous G 34.1 2.6E+02 0.0057 24.3 8.3 60 178-240 127-186 (187)
40 PF00514 Arm: Armadillo/beta-c 33.5 1.2E+02 0.0027 20.1 4.8 37 73-109 4-40 (41)
41 COG5657 CSE1 CAS/CSE protein i 32.4 2.7E+02 0.0058 32.0 9.5 64 159-225 175-241 (947)
42 KOG1991 Nuclear transport rece 32.3 8.7E+02 0.019 28.3 13.7 199 53-267 6-232 (1010)
43 PF13513 HEAT_EZ: HEAT-like re 28.6 75 0.0016 22.3 3.2 48 228-279 3-50 (55)
44 PF10835 DUF2573: Protein of u 28.3 3.1E+02 0.0068 22.4 6.8 65 40-108 2-69 (82)
45 PTZ00446 vacuolar sorting prot 27.5 1.6E+02 0.0034 27.6 5.8 17 13-29 24-40 (191)
46 PF09090 MIF4G_like_2: MIF4G l 27.4 5.4E+02 0.012 24.4 10.5 123 11-167 6-137 (253)
47 PF11841 DUF3361: Domain of un 26.9 3.4E+02 0.0073 24.7 7.7 124 168-299 12-146 (160)
48 PF10350 DUF2428: Putative dea 26.8 5.5E+02 0.012 24.3 9.8 112 177-299 110-239 (255)
49 PF14680 FANCI_HD2: FANCI heli 26.6 81 0.0018 30.1 3.9 48 145-215 34-84 (234)
50 cd00256 VATPase_H VATPase_H, r 26.5 7.7E+02 0.017 25.8 11.8 64 213-280 144-210 (429)
51 KOG0414 Chromosome condensatio 26.3 4.3E+02 0.0092 31.4 9.9 74 217-291 317-393 (1251)
52 PF04826 Arm_2: Armadillo-like 25.7 83 0.0018 30.3 3.8 71 217-291 139-210 (254)
53 PF01417 ENTH: ENTH domain; I 25.0 2.2E+02 0.0047 23.9 5.9 92 59-154 13-112 (125)
54 COG5098 Chromosome condensatio 24.1 4.2E+02 0.0091 30.1 9.0 100 145-250 322-423 (1128)
55 PF12552 DUF3741: Protein of u 23.8 77 0.0017 23.1 2.4 19 293-311 25-43 (46)
56 KOG0166 Karyopherin (importin) 23.8 5.3E+02 0.011 27.8 9.5 118 74-196 357-486 (514)
57 PF13929 mRNA_stabil: mRNA sta 23.7 7.4E+02 0.016 24.8 10.2 146 97-256 111-264 (292)
58 PF14771 DUF4476: Domain of un 23.1 1.9E+02 0.0042 23.1 4.9 29 167-197 8-36 (95)
59 PF04388 Hamartin: Hamartin pr 22.9 1.8E+02 0.0038 32.0 6.1 73 168-242 5-98 (668)
60 PF01602 Adaptin_N: Adaptin N 22.9 8E+02 0.017 24.8 18.9 139 168-314 340-503 (526)
61 PF04826 Arm_2: Armadillo-like 21.5 7.3E+02 0.016 23.8 12.4 81 224-315 107-187 (254)
62 PF04690 YABBY: YABBY protein; 21.2 93 0.002 28.6 3.0 49 9-59 121-169 (170)
63 PF05804 KAP: Kinesin-associat 21.0 1.1E+03 0.023 26.5 11.5 180 118-306 280-470 (708)
64 COG4836 Predicted membrane pro 20.5 77 0.0017 25.4 2.0 47 207-261 28-74 (77)
65 KOG1967 DNA repair/transcripti 20.1 5.2E+02 0.011 30.0 8.9 187 82-279 816-1017(1030)
No 1
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=100.00 E-value=3.7e-126 Score=928.24 Aligned_cols=333 Identities=53% Similarity=0.836 Sum_probs=295.7
Q ss_pred CCccCCCCCCCCChHHHHHHHHHHHHhccccchhhHHHhHHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhh
Q 019167 1 MSFSFFKPSRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKE 80 (345)
Q Consensus 1 m~~~f~~~k~~k~P~e~Vr~~~e~l~~l~~~~~~~~~~~~k~~ee~~K~l~~mk~il~g~~e~ep~~e~~~qL~~ei~~~ 80 (345)
|||+| +|+||||+|+||+++|+|.+|+ ++ .+++++|++|||+|+|++||+||+|++|++|++|+|+||++|+|++
T Consensus 1 M~FlF--~k~~KtP~ElVr~l~e~L~~L~-~~--~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~v~qLa~Ei~~~ 75 (335)
T PF08569_consen 1 MSFLF--KKKPKTPAELVRSLREALEKLD-SK--SDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQVAQLAQEIYRS 75 (335)
T ss_dssp -------------HHHHHHHHHHHHHHHH-SS---HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHHHHHHHHHHHHH
T ss_pred CCCCc--CCCCCCHHHHHHHHHHHHHHhc-cc--cCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHh
Confidence 55555 4459999999999999999997 22 4678899999999999999999999999999999999999999999
Q ss_pred cHHHHHHhhCCCCCchhhhhHHHHHHHHhhcccCCcc-chhHHhhhc-HhHHHHHHhcccCcchhhhhhHHHHHHhhhhH
Q 019167 81 DVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTY-CCVQFIENH-FELLDFLVVCYDNKEVALHCGIMLRECIKFPS 158 (345)
Q Consensus 81 dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~-p~v~Yl~~~-peil~~Ll~gY~~~dial~~G~mLRecik~e~ 158 (345)
|++..||.+|+.||||+|||+++||++++|+++|+++ |+|+|+++| |||+++|++||++||+|++||.|||||+|||+
T Consensus 76 dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~ 155 (335)
T PF08569_consen 76 DLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHES 155 (335)
T ss_dssp THHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHH
T ss_pred CHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHH
Confidence 9999999999999999999999999999999999998 999999998 99999999999999999999999999999999
Q ss_pred HHHHHhcchhHHHhhhhccCCCchhhhhhHHHHHHhhhcChhhHHHHHHhhHHHHHHHHHhhhcCCCceehhhhhhhhHH
Q 019167 159 LARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSE 238 (345)
Q Consensus 159 la~~iL~~~~f~~fF~y~~~~~FeiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~~n~LL~s~NYVTkRQSLKLLge 238 (345)
+|++||++++||+||+|++.|+||||||||+||+++||+||++||+||.+|||+||++|++||+|+||||||||||||||
T Consensus 156 l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~e 235 (335)
T PF08569_consen 156 LAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGE 235 (335)
T ss_dssp HHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHhcchhhHHHHHHHhcCCcccchhhhhhhhhhhhcCCCCChHHHHHHHHhHHHHHHHHhccCCCCCC
Q 019167 239 FLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVFVANPNKPHEVKVILAKNHEKLLELLRNLSVGKGA 318 (345)
Q Consensus 239 lLldr~N~~vM~~Yi~~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~~~ 318 (345)
||+||+|++||+|||+||+|||+||+||+|+||+||+|||||||||||||+||+||++||.+||+|||+||.+|++|++
T Consensus 236 llldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~~f~~~~~- 314 (335)
T PF08569_consen 236 LLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFLKDFHTDRT- 314 (335)
T ss_dssp HHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHHHTTTTT---
T ss_pred HHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHhCCCCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCcccHHHHHHHHHHHhhcCC
Q 019167 319 DDDQFEEEKELIMKEIERVSG 339 (345)
Q Consensus 319 ~DeqF~dEK~~lI~~I~~L~~ 339 (345)
+|+||.|||++||++|++|||
T Consensus 315 ~D~qf~~EK~~li~~i~~L~~ 335 (335)
T PF08569_consen 315 DDEQFEDEKAYLIKQIESLPP 335 (335)
T ss_dssp S-CHHHHHHHHHHHHHHT---
T ss_pred ccccHHHHHHHHHHHHHhCCC
Confidence 999999999999999999986
No 2
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=100.00 E-value=1.5e-121 Score=878.05 Aligned_cols=339 Identities=50% Similarity=0.783 Sum_probs=329.5
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHhccccchhhHHHhHHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhhcH
Q 019167 3 FSFFKPSRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKEDV 82 (345)
Q Consensus 3 ~~f~~~k~~k~P~e~Vr~~~e~l~~l~~~~~~~~~~~~k~~ee~~K~l~~mk~il~g~~e~ep~~e~~~qL~~ei~~~dl 82 (345)
|.|||+|+||||+|+||.++|.|..++..+...+++++|++|||+|++..+|+|+||++|.||.+|+|+||++|+|+.|+
T Consensus 1 M~~~f~k~~ktP~d~Vr~~rd~l~~~~~~~~l~~~~~~k~~eevsk~l~~~k~il~Gn~e~eP~~e~~~qLtqef~~~~~ 80 (342)
T KOG1566|consen 1 MFFLFKKSPKTPADVVRRTRDKLKFLDKVRDLLDHKREKAVEEVSKNLDMLKSILYGNDEAEPFAEAVAQLTQEFYNADV 80 (342)
T ss_pred CCCccCCCCCCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHhhhHHheeCCCCCCCChHHHHHHHHHHHhCCc
Confidence 34444445999999999999999999998766789999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCchhhhhHHHHHHHHhhcccCCccchhHHhhhcHhHHHHHHhcccC-cchhhhhhHHHHHHhhhhHHHH
Q 019167 83 LILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDN-KEVALHCGIMLRECIKFPSLAR 161 (345)
Q Consensus 83 l~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~Ll~gY~~-~dial~~G~mLRecik~e~la~ 161 (345)
+.+||.|+|+++||+|||+++||++++|+++|+++|+|+|+++|||+++.|++||++ +|+|++||+|||||+|||.||+
T Consensus 81 l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirhe~Lak 160 (342)
T KOG1566|consen 81 LSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIRHEFLAK 160 (342)
T ss_pred hHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999996 9999999999999999999999
Q ss_pred HHhcchhHHHhhhhccCCCchhhhhhHHHHHHhhhcChhhHHHHHHhhHHHHHHH-HHhhhcCCCceehhhhhhhhHHHh
Q 019167 162 YILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDL-YEKLLTSSNYVTRRQSLKLLSEFL 240 (345)
Q Consensus 162 ~iL~~~~f~~fF~y~~~~~FeiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~-~n~LL~s~NYVTkRQSLKLLgelL 240 (345)
++|+|++||+||.||+.|+||||||||+|||+++|+||.+|||||.+|||+||.+ |++|++|+||||||||+||||++|
T Consensus 161 iiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~ll 240 (342)
T KOG1566|consen 161 IILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELL 240 (342)
T ss_pred HHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 558999999999999999999999
Q ss_pred cCCCCHHHHHHHhcchhhHHHHHHHhcCCcccchhhhhhhhhhhhcCCCCChHHHHHHHHhHHHHHHHHhccCCCCCCCC
Q 019167 241 LEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVFVANPNKPHEVKVILAKNHEKLLELLRNLSVGKGADD 320 (345)
Q Consensus 241 ldr~N~~vM~~Yi~~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~~~~D 320 (345)
+||+|+.+|++||++|+|||+||+||||+|||||+||||||||||||||||+||.+||.+||+||++|+.+|++|++ +|
T Consensus 241 ldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr~KLl~~l~~f~~d~~-~D 319 (342)
T KOG1566|consen 241 LDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNRPKLLELLHDFHTDRT-ED 319 (342)
T ss_pred hCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCcHHHHHHHHHhCCCCC-ch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cccHHHHHHHHHHHhhcCCCCC
Q 019167 321 DQFEEEKELIMKEIERVSGLPN 342 (345)
Q Consensus 321 eqF~dEK~~lI~~I~~L~~~~~ 342 (345)
+||+|||+++|++|++|++++.
T Consensus 320 eqF~dEk~~~i~eI~~l~~~~~ 341 (342)
T KOG1566|consen 320 EQFLDEKAYLIKEIRQLKRLDS 341 (342)
T ss_pred hhhhhhHHHHHHHHHhcccccC
Confidence 9999999999999999998764
No 3
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=92.10 E-value=0.3 Score=48.71 Aligned_cols=147 Identities=19% Similarity=0.245 Sum_probs=110.8
Q ss_pred cHhHHHHHHhcccCcchhhhhhHHHHHHhhhh-HHHHHHhcchhHHHhhhhccCCCchhhhhhHHHHHHhhhcCh---hh
Q 019167 126 HFELLDFLVVCYDNKEVALHCGIMLRECIKFP-SLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHL---TV 201 (345)
Q Consensus 126 ~peil~~Ll~gY~~~dial~~G~mLRecik~e-~la~~iL~~~~f~~fF~y~~~~~FeiasDAf~Tfkellt~Hk---~l 201 (345)
+-++++.+-+||..+...+......+.-...- +|+.-+-.+..+....++...-.||---|+...|.-++.++. ..
T Consensus 37 ~~k~~eevsk~l~~~k~il~Gn~e~eP~~e~~~qLtqef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~ 116 (342)
T KOG1566|consen 37 REKAVEEVSKNLDMLKSILYGNDEAEPFAEAVAQLTQEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSP 116 (342)
T ss_pred HHHHHHHHHHHHhhhHHheeCCCCCCCChHHHHHHHHHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcch
Confidence 46777777788877777666666666544322 344455556778888899999999999999999999988775 56
Q ss_pred HHHHHHhhHHHHH---HHHH----hhhcCCCceehhhhhhhhHHHhcCCCCHHHHHHHhcchhhHHHHHHHhcCCcccch
Q 019167 202 VSEYLTAHYDEFF---DLYE----KLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQ 274 (345)
Q Consensus 202 vaefl~~Nyd~Ff---~~~n----~LL~s~NYVTkRQSLKLLgelLldr~N~~vM~~Yi~~~~NLkliM~LL~d~sk~Iq 274 (345)
+++||..|.+-.+ ..|. .+|+.||....--+-+.|++++|.-.|+.-.-.||..|.. + |.
T Consensus 117 tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirhe~LakiiL~s~~~~~FF~~vq~p~F-d------------ia 183 (342)
T KOG1566|consen 117 TVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIRHEFLAKIILESTNFEKFFLYVQLPNF-D------------IA 183 (342)
T ss_pred HHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHhhHHHHHHHHcchhHHHHHHHHhccch-H------------HH
Confidence 7799988876543 3333 3788888887777778899999999999999999988876 4 35
Q ss_pred hhhhhhhhhhh
Q 019167 275 ISAFHIFKVFV 285 (345)
Q Consensus 275 ~EAFhvFKvFV 285 (345)
.+||..||--+
T Consensus 184 sdA~~tfK~ll 194 (342)
T KOG1566|consen 184 SDAFSTFKELL 194 (342)
T ss_pred HHHHHHHHHHH
Confidence 78888888533
No 4
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=89.50 E-value=1.5 Score=34.65 Aligned_cols=110 Identities=17% Similarity=0.175 Sum_probs=81.7
Q ss_pred hhHHHhhhhccCCCchhhhhhHHHHHHhhhcChhhHHHHHHhhHHHHHHHHHhhhcCCCceehhhhhhhhHHHhcCCCCH
Q 019167 167 ASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNS 246 (345)
Q Consensus 167 ~~f~~fF~y~~~~~FeiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~~n~LL~s~NYVTkRQSLKLLgelLldr~N~ 246 (345)
+.+..+.+.+..++-++-..|..++..+-...+.....++.. .++...-++|.++|+-.++.++..|+.|..+..
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~---~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~-- 81 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEA---GGLPALVQLLKSEDEEVVKAALWALRNLAAGPE-- 81 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC---CChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH--
Confidence 344455566677777888899999888766557777777654 566677788999999999999999999987543
Q ss_pred HHHHHHhcchhhHHHHHHHhcCCcccchhhhhhhhh
Q 019167 247 HIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFK 282 (345)
Q Consensus 247 ~vM~~Yi~~~~NLkliM~LL~d~sk~Iq~EAFhvFK 282 (345)
. ....+-+..-+..+..+|.+.+..++-.|..++.
T Consensus 82 ~-~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~ 116 (120)
T cd00020 82 D-NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALS 116 (120)
T ss_pred H-HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHH
Confidence 2 3333344567999999999988888777766654
No 5
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=88.37 E-value=9.4 Score=39.94 Aligned_cols=158 Identities=15% Similarity=0.235 Sum_probs=116.5
Q ss_pred cHhHHHHHHhcccCcchhhh--hhHHHHHHhhhhHH-HHHHhcchhHHHhhhhccCCCchhhhhhHHHHHHhhhcChhhH
Q 019167 126 HFELLDFLVVCYDNKEVALH--CGIMLRECIKFPSL-ARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVV 202 (345)
Q Consensus 126 ~peil~~Ll~gY~~~dial~--~G~mLRecik~e~l-a~~iL~~~~f~~fF~y~~~~~FeiasDAf~Tfkellt~Hk~lv 202 (345)
-|++...|..|..+|+-..- +=..|+-|+++... +..+...+.+-.+...+..++-+||..|...++.+.. |+.-.
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~~ 153 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEGL 153 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC-CchhH
Confidence 57777777888776654332 22336677777666 4455556666677788999999999999999999986 55555
Q ss_pred HHHHHhhHHHHHHHHHhhhcCCCceehhhhhhhhHHHhcCCCCHHHHHHHhcchhhHHHHHHHhcCCcccchhhhhhhhh
Q 019167 203 SEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFK 282 (345)
Q Consensus 203 aefl~~Nyd~Ff~~~n~LL~s~NYVTkRQSLKLLgelLldr~N~~vM~~Yi~~~~NLkliM~LL~d~sk~Iq~EAFhvFK 282 (345)
+..+..|. ......++..+|=+.|.+.+.++.++-. .. .-...|+.+..-+..+...|.++---+|.-|.-++.
T Consensus 154 ~~l~~~~~---~~~L~~l~~~~~~~vR~Rv~el~v~i~~--~S-~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~ 227 (503)
T PF10508_consen 154 EQLFDSNL---LSKLKSLMSQSSDIVRCRVYELLVEIAS--HS-PEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLS 227 (503)
T ss_pred HHHhCcch---HHHHHHHHhccCHHHHHHHHHHHHHHHh--cC-HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 55556654 6778889988777889999999999963 33 334466776779999999999966668999998888
Q ss_pred hhhcCCCC
Q 019167 283 VFVANPNK 290 (345)
Q Consensus 283 vFVANP~K 290 (345)
-....|+-
T Consensus 228 ~La~~~~g 235 (503)
T PF10508_consen 228 ELAETPHG 235 (503)
T ss_pred HHHcChhH
Confidence 77774443
No 6
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=87.56 E-value=2.6 Score=38.27 Aligned_cols=204 Identities=16% Similarity=0.225 Sum_probs=98.9
Q ss_pred CCCCchhhhhHHHHHHHHhhcccCCccchhHHhhhcHhHHHHHHhcccCcc--hhhhhhHHHHHHhhhhH--HHHHHhcc
Q 019167 91 PILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDNKE--VALHCGIMLRECIKFPS--LARYILES 166 (345)
Q Consensus 91 ~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~Ll~gY~~~d--ial~~G~mLRecik~e~--la~~iL~~ 166 (345)
+.-+|+.|.+..+-...+++.......+ -.|+..=.+++..+...-.+.- ++-.+-..+-++.++-. +..+ -+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~-~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~--~~ 93 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFP-PDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY--AD 93 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B------HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH--HH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccH-HHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH--HH
Confidence 6778999999998888888876322221 2233221255555555554433 22333333333322200 0000 01
Q ss_pred hhHHHhhhhccCCCchhhhhhHHHHHHhhhcChhhHHHHHHhhHHHH-HHHHHhhhcCCCceehhhhhhhhHHHhcCCC-
Q 019167 167 ASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEF-FDLYEKLLTSSNYVTRRQSLKLLSEFLLEPP- 244 (345)
Q Consensus 167 ~~f~~fF~y~~~~~FeiasDAf~Tfkellt~Hk~lvaefl~~Nyd~F-f~~~n~LL~s~NYVTkRQSLKLLgelLldr~- 244 (345)
..+-.+++-+..++=-|+..|-.++..+...-. . ..+. +..+...+.+.|=-.|+.++.+|..++..-.
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~--------~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~ 164 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCS-Y--------SPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGS 164 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H----------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-c--------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccc
Confidence 122334444444544566777777777655211 0 2344 5566678899999999999999999886433
Q ss_pred CHHHHHHHhcchhhHHHHHHHhcCCcccchhhhhhhhhhhhc-CCCCChHHHHHHHHhHHHHH
Q 019167 245 NSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVFVA-NPNKPHEVKVILAKNHEKLL 306 (345)
Q Consensus 245 N~~vM~~Yi~~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFVA-NP~K~~~I~~IL~~Nr~kLl 306 (345)
+...+..-..=+.-.+.+..+|.|.+..++-.|..+|-.|-. -|.+...+.+-|-.|..|.|
T Consensus 165 ~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~~l~~~~qk~l 227 (228)
T PF12348_consen 165 DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESILSMLDPNIQKYL 227 (228)
T ss_dssp --GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH---------------
T ss_pred hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchhcchhcccccC
Confidence 223332222226678899999999999999999999988753 36666666665555555544
No 7
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=83.60 E-value=2 Score=35.85 Aligned_cols=77 Identities=14% Similarity=0.313 Sum_probs=55.9
Q ss_pred HHHHHhhHHHHHHHHHh-hhc---CCCceehhhhhhhhHHHhcCCCCHHHHHHHhcchhhHHHHHHHhcC--Ccccchhh
Q 019167 203 SEYLTAHYDEFFDLYEK-LLT---SSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKD--SSKNIQIS 276 (345)
Q Consensus 203 aefl~~Nyd~Ff~~~n~-LL~---s~NYVTkRQSLKLLgelLldr~N~~vM~~Yi~~~~NLkliM~LL~d--~sk~Iq~E 276 (345)
++||..|+=..+..++. +.. +..|..|+++++=||+++- .+..||+.-. =| ||..|+. ..+.++.+
T Consensus 2 ~~fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~------~~~~~i~~~~-pQ-I~a~L~sal~~~~l~~~ 73 (107)
T PF08064_consen 2 ADFLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIK------LGGSHISSAR-PQ-IMACLQSALEIPELREE 73 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHH------HhHHHHHHHH-HH-HHHHHHHHhCChhhHHH
Confidence 68999999777777775 333 6999999999999999995 3344444321 23 4444443 34479999
Q ss_pred hhhhhhhhhcC
Q 019167 277 AFHIFKVFVAN 287 (345)
Q Consensus 277 AFhvFKvFVAN 287 (345)
|+.++..||-+
T Consensus 74 al~~W~~fi~~ 84 (107)
T PF08064_consen 74 ALSCWNCFIKT 84 (107)
T ss_pred HHHHHHHHHHH
Confidence 99999999975
No 8
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=83.41 E-value=9 Score=30.05 Aligned_cols=97 Identities=15% Similarity=0.095 Sum_probs=70.6
Q ss_pred cchhhhhhHHHHHHhhh-hHHHHHHhcchhHHHhhhhccCCCchhhhhhHHHHHHhhhcChhhHHHHHHhhHHHHHHHHH
Q 019167 140 KEVALHCGIMLRECIKF-PSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYE 218 (345)
Q Consensus 140 ~dial~~G~mLRecik~-e~la~~iL~~~~f~~fF~y~~~~~FeiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~~n 218 (345)
+++-..+-..|.....+ +.....++..+.+..+.+++..++-++.-.|..++..+....+.....+... .+.....
T Consensus 21 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~---g~l~~l~ 97 (120)
T cd00020 21 ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEA---GGVPKLV 97 (120)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHC---CChHHHH
Confidence 44444444555555555 7777888888888888889888999999999999999876544333333332 2666777
Q ss_pred hhhcCCCceehhhhhhhhHHH
Q 019167 219 KLLTSSNYVTRRQSLKLLSEF 239 (345)
Q Consensus 219 ~LL~s~NYVTkRQSLKLLgel 239 (345)
+++.+++.=++++++-+|+.|
T Consensus 98 ~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 98 NLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHh
Confidence 888888888999999988876
No 9
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=83.14 E-value=11 Score=33.59 Aligned_cols=86 Identities=27% Similarity=0.334 Sum_probs=67.5
Q ss_pred hhhhhHHHHHHhhhcChhhHHHHHHhhHHHHHHHHHhhhcCCCceehhhhhhhhHHHhcCCCCHHHHHHHhcchhhH-HH
Q 019167 183 VASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFL-KV 261 (345)
Q Consensus 183 iasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~~n~LL~s~NYVTkRQSLKLLgelLldr~N~~vM~~Yi~~~~NL-kl 261 (345)
|-+-|..++-|+..+|+.+|-.|+ ...-..|.+++=..|++++..|..|++. -|+--...+ -.
T Consensus 4 vR~n~i~~l~DL~~r~~~~ve~~~--------~~l~~~L~D~~~~VR~~al~~Ls~Li~~--------d~ik~k~~l~~~ 67 (178)
T PF12717_consen 4 VRNNAIIALGDLCIRYPNLVEPYL--------PNLYKCLRDEDPLVRKTALLVLSHLILE--------DMIKVKGQLFSR 67 (178)
T ss_pred HHHHHHHHHHHHHHhCcHHHHhHH--------HHHHHHHCCCCHHHHHHHHHHHHHHHHc--------CceeehhhhhHH
Confidence 446678888999999988886554 3445678888999999999999999873 456666666 77
Q ss_pred HHHHhcCCcccchhhhhhhhhhh
Q 019167 262 MMTLLKDSSKNIQISAFHIFKVF 284 (345)
Q Consensus 262 iM~LL~d~sk~Iq~EAFhvFKvF 284 (345)
++.+|.|++..|+--|=..|.=+
T Consensus 68 ~l~~l~D~~~~Ir~~A~~~~~e~ 90 (178)
T PF12717_consen 68 ILKLLVDENPEIRSLARSFFSEL 90 (178)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHH
Confidence 88888999999998887777643
No 10
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=82.96 E-value=24 Score=43.43 Aligned_cols=200 Identities=14% Similarity=0.080 Sum_probs=137.7
Q ss_pred HhhcHHHHHHhhCCCCCchhhhhHHHHHHHHhhcccCCcc-chhHHhhh-cHhHHHHHHhcccCcchhhhhhHHHHHHhh
Q 019167 78 CKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTY-CCVQFIEN-HFELLDFLVVCYDNKEVALHCGIMLRECIK 155 (345)
Q Consensus 78 ~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~-p~v~Yl~~-~peil~~Ll~gY~~~dial~~G~mLRecik 155 (345)
.+.+.+..|+.-|..=+++.++.+.....++++....... |.++.+.. .|.+....++ ..|.|+-.+-.
T Consensus 527 ~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~---------vLgnIlsl~~~ 597 (2102)
T PLN03200 527 ESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLD---------VLGHVLSVASL 597 (2102)
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHH---------HHHHHHhhcch
Confidence 3567888888888888899999988888887764322211 11111111 2222222221 34444444444
Q ss_pred hhHHHHHHhcchhHHHhhhhccCCCchhhhhhHHHHHHhhhcChhhHHHHHHhhHHHHHHHHHhhhcCCCceehhhhhhh
Q 019167 156 FPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKL 235 (345)
Q Consensus 156 ~e~la~~iL~~~~f~~fF~y~~~~~FeiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~~n~LL~s~NYVTkRQSLKL 235 (345)
++...........+..+.+.++.++=++--+|..++-.+.+.+++.....+..+ -+.-.-.||.+++.-+++++-.-
T Consensus 598 ~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~ag---aIpPLV~LLss~~~~v~keAA~A 674 (2102)
T PLN03200 598 EDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDE---IINPCIKLLTNNTEAVATQSARA 674 (2102)
T ss_pred hHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcC---CHHHHHHHHhcCChHHHHHHHHH
Confidence 444444444456777788888888889999999999999998888777666554 24456679999999999999999
Q ss_pred hHHHhcCCCCHHHHHHHhcchhhHHHHHHHhcCCcccchhhhhhhhhhhhcCCCCC
Q 019167 236 LSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVFVANPNKP 291 (345)
Q Consensus 236 LgelLldr~N~~vM~~Yi~~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFVANP~K~ 291 (345)
|+.+... ...--..++-...-++.++.+|++++-.+.-+|-...--++..|.--
T Consensus 675 L~nL~~~--~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~ 728 (2102)
T PLN03200 675 LAALSRS--IKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVA 728 (2102)
T ss_pred HHHHHhC--CCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHH
Confidence 9999953 22222234456778999999999999999999999888888777643
No 11
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.21 E-value=23 Score=39.72 Aligned_cols=166 Identities=18% Similarity=0.177 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHhhcHHHHHHhhCCCCCchhhhhHHHHHHHHhhc---ccCCccchhHHhhhcHhHHHHHHhcccCcchh
Q 019167 67 ADQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQ---KVDSTYCCVQFIENHFELLDFLVVCYDNKEVA 143 (345)
Q Consensus 67 ~e~~~qL~~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~---~~~~~~p~v~Yl~~~peil~~Ll~gY~~~dia 143 (345)
.|.+..|......+-+ +|-|||++.=.-++-|. .+|..- =+-+++.|-+-|.++|+.
T Consensus 21 aETI~kLcDRvessTL------------~eDRR~A~rgLKa~srkYR~~Vga~G--------mk~li~vL~~D~~D~E~i 80 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTL------------LEDRRDAVRGLKAFSRKYREEVGAQG--------MKPLIQVLQRDYMDPEII 80 (970)
T ss_pred HhHHHHHHHHHhhccc------------hhhHHHHHHHHHHHHHHHHHHHHHcc--------cHHHHHHHhhccCCHHHH
Confidence 4667777777776654 46899988766555442 333211 367888888889999865
Q ss_pred hhhhHHHHHHhhhhHHHHHHhcchhHHHhhhhccCCCchhhhhhHHHHHHhhhcChhhHHHHHHhhHHHHHHHHHhhhcC
Q 019167 144 LHCGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTS 223 (345)
Q Consensus 144 l~~G~mLRecik~e~la~~iL~~~~f~~fF~y~~~~~FeiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~~n~LL~s 223 (345)
-.+=..+--.++|+. +-..+..+. .+.|-=.-|-|.|+..+..+.- .-..++.
T Consensus 81 k~~LdTl~il~~~dd-------------~~~v~dds~--qsdd~g~~iae~fik~qd~I~l------------ll~~~e~ 133 (970)
T KOG0946|consen 81 KYALDTLLILTSHDD-------------SPEVMDDST--QSDDLGLWIAEQFIKNQDNITL------------LLQSLEE 133 (970)
T ss_pred HHHHHHHHHHHhcCc-------------chhhcccch--hhhHHHHHHHHHHHcCchhHHH------------HHHHHHh
Confidence 544444433333332 122345555 5555556677777766654442 2234455
Q ss_pred CCceehhhhhhhhHHHhcCCCCHHHHHHHhcchhhHHHHHHHhcCCcccchhhhhhh
Q 019167 224 SNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHI 280 (345)
Q Consensus 224 ~NYVTkRQSLKLLgelLldr~N~~vM~~Yi~~~~NLkliM~LL~d~sk~Iq~EAFhv 280 (345)
-++-.||-+++||..+|..|. -++-..-+.+|--.--||-+|+|..-.|+=||--.
T Consensus 134 ~DF~VR~~aIqLlsalls~r~-~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLl 189 (970)
T KOG0946|consen 134 FDFHVRLYAIQLLSALLSCRP-TELQDALLVSPMGISKLMDLLRDSREPIRNEAILL 189 (970)
T ss_pred hchhhhhHHHHHHHHHHhcCC-HHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHH
Confidence 577889999999999999988 67778889999999999999999999999888643
No 12
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=76.84 E-value=66 Score=31.78 Aligned_cols=158 Identities=13% Similarity=0.108 Sum_probs=90.4
Q ss_pred HHHHHhhCCCCCchhhhh-HHHHHHHHhhcccCCccchhHHhhhc--HhHHHHHHhccc-CcchhhhhhHHHHHHhhhhH
Q 019167 83 LILLVHKLPILGWEARKD-LVHCWSILLKQKVDSTYCCVQFIENH--FELLDFLVVCYD-NKEVALHCGIMLRECIKFPS 158 (345)
Q Consensus 83 l~~Li~~l~~L~fE~RKd-v~~If~~llr~~~~~~~p~v~Yl~~~--peil~~Ll~gY~-~~dial~~G~mLRecik~e~ 158 (345)
+..++.--..-..++|-- |..+++.+.++-.+.-.|.+.-+.++ --++.++-+.++ .||....+=.+||-++++-.
T Consensus 73 ~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f 152 (319)
T PF08767_consen 73 LDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCF 152 (319)
T ss_dssp HHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhH
Confidence 333443444444555543 66667776665332222222222221 223333333444 69999999999999888733
Q ss_pred HHHHHhcchhHHHhhhhc----cCCCchhhhhhHHHHHHhhhcC----hhhHHHHHHhhHHHHHHHHHhhhcCCCc-eeh
Q 019167 159 LARYILESASFELFFKFV----ELPTFDVASDAFSTFKDLLTKH----LTVVSEYLTAHYDEFFDLYEKLLTSSNY-VTR 229 (345)
Q Consensus 159 la~~iL~~~~f~~fF~y~----~~~~FeiasDAf~Tfkellt~H----k~lvaefl~~Nyd~Ff~~~n~LL~s~NY-VTk 229 (345)
-+=.-|..+.|..+++.+ +.++-||+..++.++.++++.- ...+.+|..+.|-.+..+.-..+..+.. ..=
T Consensus 153 ~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf 232 (319)
T PF08767_consen 153 PALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGF 232 (319)
T ss_dssp HHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGH
T ss_pred HHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHH
Confidence 222236667777777654 6899999999999999999854 3555688888877777765553333332 122
Q ss_pred hhhhhhhHHHh
Q 019167 230 RQSLKLLSEFL 240 (345)
Q Consensus 230 RQSLKLLgelL 240 (345)
++.-.+|..++
T Consensus 233 ~~q~~iL~~Lf 243 (319)
T PF08767_consen 233 KLQSQILSNLF 243 (319)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 22225555555
No 13
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=75.96 E-value=88 Score=38.85 Aligned_cols=191 Identities=13% Similarity=0.097 Sum_probs=128.8
Q ss_pred HHHHHhhcHHHHHHhhCCCCCchhhhhHHHHHHHHhhcccCCccchhHHhhh---cHhHHHHHHhcccCcchhhhhhHHH
Q 019167 74 ATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIEN---HFELLDFLVVCYDNKEVALHCGIML 150 (345)
Q Consensus 74 ~~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~---~peil~~Ll~gY~~~dial~~G~mL 150 (345)
.+.+...+.+..|+..|..=+-+.++.+...++++-....+++ .-+.+ =|-++.+|-.| ++++--.+=..|
T Consensus 439 ~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr----~aIieaGaIP~LV~LL~s~--~~~iqeeAawAL 512 (2102)
T PLN03200 439 WEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESK----WAITAAGGIPPLVQLLETG--SQKAKEDSATVL 512 (2102)
T ss_pred HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH----HHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHH
Confidence 3556667788999999988777888888877777654322211 11111 24444444333 233322222222
Q ss_pred HHHhhhh-HHHHHHhcchhHHHhhhhccCCCchhhhhhHHHHHHhhhc-ChhhHHHHHHhhHHHHHHHHHhhhcCCCcee
Q 019167 151 RECIKFP-SLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTK-HLTVVSEYLTAHYDEFFDLYEKLLTSSNYVT 228 (345)
Q Consensus 151 Recik~e-~la~~iL~~~~f~~fF~y~~~~~FeiasDAf~Tfkellt~-Hk~lvaefl~~Nyd~Ff~~~n~LL~s~NYVT 228 (345)
-....++ ...+.+.....+-.+++.+..+++++-..|..++..+... +... ...+-.|+.+.+--+
T Consensus 513 ~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~------------I~~Lv~LLlsdd~~~ 580 (2102)
T PLN03200 513 WNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT------------ISQLTALLLGDLPES 580 (2102)
T ss_pred HHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH------------HHHHHHHhcCCChhH
Confidence 2222244 4444455667888888888999999988888888777542 2221 144557889999888
Q ss_pred hhhhhhhhHHHhcCCCCHHHHHHHhcchhhHHHHHHHhcCCcccchhhhhhhhh
Q 019167 229 RRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFK 282 (345)
Q Consensus 229 kRQSLKLLgelLldr~N~~vM~~Yi~~~~NLkliM~LL~d~sk~Iq~EAFhvFK 282 (345)
+-.+++.||-++.--....+.+.-+.+..=+..+..||++.++.+|-+|..+.-
T Consensus 581 ~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLs 634 (2102)
T PLN03200 581 KVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLA 634 (2102)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 889999999998866776666666777789999999999999999999996653
No 14
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=73.56 E-value=2e+02 Score=34.16 Aligned_cols=261 Identities=15% Similarity=0.134 Sum_probs=150.5
Q ss_pred CCChHHHHHHHHHHHHhccccchhhHHHhHHHHHHHHHHHH-HhhhhhcCCCCCCCCHHHHHHHHHHHHhhcHHHHHHhh
Q 019167 11 PKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFV-TMRCMLSGDGEVEPNADQVLQLATEVCKEDVLILLVHK 89 (345)
Q Consensus 11 ~k~P~e~Vr~~~e~l~~l~~~~~~~~~~~~k~~ee~~K~l~-~mk~il~g~~e~ep~~e~~~qL~~ei~~~dll~~Li~~ 89 (345)
|=|-.|+++.+++...-|.+-+.. . -..+.+.+... -+++.+....|++- +|.-..|-+|+|+. .
T Consensus 16 ~~s~~ell~rLk~l~~~l~~~~qd---~--~~~~~~~pl~~~l~~~~~L~h~d~dv------rllvacCvseilRi---~ 81 (1266)
T KOG1525|consen 16 PISKDELLKRLKKLANCLASLDQD---N--LDLASLLPLADHLIKDFLLKHKDKDV------RLLVACCVSEILRI---Y 81 (1266)
T ss_pred cccHHHHHHHHHHHHHHHhhcccC---c--hhHHHHHHHHHHHhhHHHhcCCCcCh------hHHHHHHHHHHHHH---h
Confidence 445678888777775554432210 0 11233333332 34555655555442 45555666666554 4
Q ss_pred CCCCCchhhhhHHHHHHHHhhcccCCccchhHHhhhcHhHHHHHHhc--------cc-------------------Ccch
Q 019167 90 LPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVC--------YD-------------------NKEV 142 (345)
Q Consensus 90 l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~Ll~g--------Y~-------------------~~di 142 (345)
-|.+||+.- +...||.-.+++.-|=.=+..-|..+++.++..|... ++ +|..
T Consensus 82 aPeaPy~~~-~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~ 160 (1266)
T KOG1525|consen 82 APEAPYTDE-QLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKK 160 (1266)
T ss_pred CCCCCCcHH-HHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHH
Confidence 578888777 8888888888876542222234666666666655431 11 2333
Q ss_pred hhhhhHHHHHHhhh-----hHHHHHHhcc----------------------------hhHHHhhhhccCCCchhhhhhHH
Q 019167 143 ALHCGIMLRECIKF-----PSLARYILES----------------------------ASFELFFKFVELPTFDVASDAFS 189 (345)
Q Consensus 143 al~~G~mLRecik~-----e~la~~iL~~----------------------------~~f~~fF~y~~~~~FeiasDAf~ 189 (345)
..+.+.|++.-|-- ..+...+|++ +...+|+.-.-...+-.-+.-..
T Consensus 161 v~~~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~ 240 (1266)
T KOG1525|consen 161 VFNMLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKI 240 (1266)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhh
Confidence 33344555544421 1222222221 11334443222222224455555
Q ss_pred HHHHhhhcChhhHHHHHHhhHHHHHHHHHhhhcCCCceehhhhhhhhHHHhcCCCCHHHHHHHhcchhhHHHHHHHhcCC
Q 019167 190 TFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDS 269 (345)
Q Consensus 190 Tfkellt~Hk~lvaefl~~Nyd~Ff~~~n~LL~s~NYVTkRQSLKLLgelLldr~N~~vM~~Yi~~~~NLkliM~LL~d~ 269 (345)
.+.+++-.+..++.+-|.. ...++..=|.|+|=-+|-++++|+|.++.++...-. =..++-.+....-+.|.
T Consensus 241 ~~he~i~~L~~~~p~ll~~----vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~----~~~~~~~~~fl~r~~D~ 312 (1266)
T KOG1525|consen 241 KYHELILELWRIAPQLLLA----VIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS----ETYDDLWSAFLGRFNDI 312 (1266)
T ss_pred HHHHHHHHHHHhhHHHHHH----HHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc----ccchHHHHHHHHHhccC
Confidence 6666666666666665554 233334446788888999999999999999884333 23677888899999999
Q ss_pred cccchhhhhhhhhhhhcC-CCCChHH
Q 019167 270 SKNIQISAFHIFKVFVAN-PNKPHEV 294 (345)
Q Consensus 270 sk~Iq~EAFhvFKvFVAN-P~K~~~I 294 (345)
|-.+++|.--.=|.+.+| |.-...+
T Consensus 313 ~~~vR~~~v~~~~~~l~~~~~~~~~~ 338 (1266)
T KOG1525|consen 313 SVEVRMECVESIKQCLLNNPSIAKAS 338 (1266)
T ss_pred ChhhhhhHHHHhHHHHhcCchhhhHH
Confidence 999999999999988776 4444433
No 15
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=72.15 E-value=1e+02 Score=30.21 Aligned_cols=170 Identities=17% Similarity=0.270 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhhcHHHHHHhhCCCCCchhhhhHHHHHHH----HhhcccCC
Q 019167 40 EKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKEDVLILLVHKLPILGWEARKDLVHCWSI----LLKQKVDS 115 (345)
Q Consensus 40 ~k~~ee~~K~l~~mk~il~g~~e~ep~~e~~~qL~~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~----llr~~~~~ 115 (345)
.+..+.+.+.|+..|+-.. ....++++.. +..+.+.=+++..+..- .| .+|++ ++....-.
T Consensus 73 ~~~~~~v~~~L~~~k~~wf----~~~~~~~i~~-~~~flq~Ci~PR~~~S~--------~D--A~ycakFi~~lh~~~tp 137 (298)
T PF11262_consen 73 QEHVEKVKKRLQEEKDSWF----SSKDPEKIEA-ITAFLQHCILPRALFSP--------FD--ALYCAKFIKLLHELGTP 137 (298)
T ss_pred HHHHHHHHHHHHHhhhhhh----ccCChhhHHH-HHHHHHHHHHHHhhCCH--------HH--HHHHHHHHHHHHhcCCC
Confidence 3344555666666666655 2233444432 34444433344333321 12 22322 22222223
Q ss_pred ccchhHHhhh--cHhHHHHHHhcccCcchhhhhhHHHHHHhhhhHHHHHHhcchhHHHhhhhccCCCchhhhhh------
Q 019167 116 TYCCVQFIEN--HFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDA------ 187 (345)
Q Consensus 116 ~~p~v~Yl~~--~peil~~Ll~gY~~~dial~~G~mLRecik~e~la~~iL~~~~f~~fF~y~~~~~FeiasDA------ 187 (345)
.+.++.++-. +..++..++......| |-+.|.-|.+.++ .+.+.-=..+.|.+-- -..|.|-..-++
T Consensus 138 ~F~~l~~~d~lf~~~~l~~~ifscTe~E-A~nlG~Fl~~iL~--~l~~W~~d~~~f~~e~--~~~pGF~~~~~~~~~~~l 212 (298)
T PF11262_consen 138 NFSTLSLYDRLFNSKMLSPLIFSCTENE-AENLGRFLNEILE--DLNRWHRDEEVFEKEC--ANLPGFATTFKSKPSDFL 212 (298)
T ss_pred CCCHHHHHHHHHhhhhhhhHHhccCHHH-HHHHHHHHHHHHH--HHHHHHhChHHHHHHc--cCCCchhhhccccccccC
Confidence 3556666654 4556667777666555 6677777766553 3333322222222111 356666655443
Q ss_pred -HHHHHHhhh-cChhhHHHHHHhhHHHHHHHHHhhhcCCCceehhhhhhhhHHHhc
Q 019167 188 -FSTFKDLLT-KHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLL 241 (345)
Q Consensus 188 -f~Tfkellt-~Hk~lvaefl~~Nyd~Ff~~~n~LL~s~NYVTkRQSLKLLgelLl 241 (345)
++.|+.++. =|+.+ ...+...|.|+||+..|=||=.|..++-
T Consensus 213 ~~~~f~~~~~kWh~~i------------~~~l~~~L~s~eym~iRNai~vL~~i~~ 256 (298)
T PF11262_consen 213 SYEDFRKVLYKWHKRI------------TKALISCLESKEYMHIRNAIIVLKKISP 256 (298)
T ss_pred CHHHHHHHHHHHHHHH------------HHHHHHHhcchhHHHHHHHHHHHHHHHh
Confidence 444443332 23333 3344457899999999999999998884
No 16
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.26 E-value=1.1e+02 Score=34.50 Aligned_cols=228 Identities=16% Similarity=0.218 Sum_probs=116.0
Q ss_pred HHHhhhhhcCCCCCCCCHHHHHHHHHHHH--hh----cHHHHHHhhCCCCCchhh-hhHHHHHHHHhhcccC--C---cc
Q 019167 50 FVTMRCMLSGDGEVEPNADQVLQLATEVC--KE----DVLILLVHKLPILGWEAR-KDLVHCWSILLKQKVD--S---TY 117 (345)
Q Consensus 50 l~~mk~il~g~~e~ep~~e~~~qL~~ei~--~~----dll~~Li~~l~~L~fE~R-Kdv~~If~~llr~~~~--~---~~ 117 (345)
+..||.++.---.+|+-|+..--+..... +. .+|+.-....|+.+=+.+ ..=+.+.++.+|.... + |-
T Consensus 38 IeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQHPNEyiRG 117 (948)
T KOG1058|consen 38 IEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQHPNEYIRG 117 (948)
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHHHhhhccCchHhhcc
Confidence 34455444433333444655555555442 22 355556667788766433 2234445666664331 1 22
Q ss_pred chhHHhhh--cHhHHHHHHhcccCcchhhhhhHHHHHHhhhhHHHHHHhcch-----hHHHhhhhccCCCchhhhhhHH-
Q 019167 118 CCVQFIEN--HFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILESA-----SFELFFKFVELPTFDVASDAFS- 189 (345)
Q Consensus 118 p~v~Yl~~--~peil~~Ll~gY~~~dial~~G~mLRecik~e~la~~iL~~~-----~f~~fF~y~~~~~FeiasDAf~- 189 (345)
.|..+|++ .||++.-|+. -+|.|+.|.- .|+=.+. .+++-|+++--..=|+..+++.
T Consensus 118 ~TLRFLckLkE~ELlepl~p-------------~IracleHrh--sYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~ 182 (948)
T KOG1058|consen 118 STLRFLCKLKEPELLEPLMP-------------SIRACLEHRH--SYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLT 182 (948)
T ss_pred hhhhhhhhcCcHHHhhhhHH-------------HHHHHHhCcc--hhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHh
Confidence 36778886 6888887765 3566765531 1111111 2333344433333344444333
Q ss_pred ---------HHHHhhhcChhhHHHHHHhhHHHHHHHHHhhhcCCCceehhhhhhhhHHHhcCCCCHHHHHHHhcchhhHH
Q 019167 190 ---------TFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLK 260 (345)
Q Consensus 190 ---------Tfkellt~Hk~lvaefl~~Nyd~Ff~~~n~LL~s~NYVTkRQSLKLLgelLldr~N~~vM~~Yi~~~~NLk 260 (345)
-|--|++.-+..+-.||..|.|+.= .++..|+ ---+.|+...-+ .|-.--.| ..+
T Consensus 183 e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~-~~~~~Lq-------lViVE~Irkv~~--~~p~~~~~------~i~ 246 (948)
T KOG1058|consen 183 EQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIP-SFNDSLQ-------LVIVELIRKVCL--ANPAEKAR------YIR 246 (948)
T ss_pred ccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhcc-CccHHHH-------HHHHHHHHHHHh--cCHHHhhH------HHH
Confidence 3445677777888888888877732 1111110 001112211111 22222223 368
Q ss_pred HHHHHhcCCcccchhhhhhhhhhhhcCCCCChH----HHHHHH---HhHHHHHHH
Q 019167 261 VMMTLLKDSSKNIQISAFHIFKVFVANPNKPHE----VKVILA---KNHEKLLEL 308 (345)
Q Consensus 261 liM~LL~d~sk~Iq~EAFhvFKvFVANP~K~~~----I~~IL~---~Nr~kLl~f 308 (345)
.+|++|.+.|..+.|||=--.=..-.+|.-=++ +.+.+. .|+.|||-.
T Consensus 247 ~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvl 301 (948)
T KOG1058|consen 247 CIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVL 301 (948)
T ss_pred HHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhH
Confidence 999999999999999997655444445543222 222332 266666643
No 17
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=68.00 E-value=1.6e+02 Score=30.83 Aligned_cols=244 Identities=19% Similarity=0.227 Sum_probs=151.0
Q ss_pred HHhhcHHHHHHhhCCCCCchhhhhHHHHHHHHhhcccCCccchhHHhhhc---HhHHHHHHhcccCc--chhhhhhHHHH
Q 019167 77 VCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENH---FELLDFLVVCYDNK--EVALHCGIMLR 151 (345)
Q Consensus 77 i~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~---peil~~Ll~gY~~~--dial~~G~mLR 151 (345)
+..++++..++..+..=|.=.|..+..++..+-.... ..+||.+. +.+...+...=++| ...+..|.|.
T Consensus 198 ~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~-----g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~- 271 (503)
T PF10508_consen 198 VVNSGLLDLLLKELDSDDILVQLNALELLSELAETPH-----GLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMK- 271 (503)
T ss_pred HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChh-----HHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHH-
Confidence 3445677777777777555567777777777665222 37899863 44444444444455 3344455541
Q ss_pred HHhhhhHHHHH------HhcchhHHHhhhhccCCCchhhhhhHHHHHHhhhcChhhHHHHH----HhhHHHHHHHHHhhh
Q 019167 152 ECIKFPSLARY------ILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYL----TAHYDEFFDLYEKLL 221 (345)
Q Consensus 152 ecik~e~la~~------iL~~~~f~~fF~y~~~~~FeiasDAf~Tfkellt~Hk~lvaefl----~~Nyd~Ff~~~n~LL 221 (345)
-...++.+ -.+...+..+|+.++..+=.+..-|+.|+=.+=++ .--.+.| ..........|-...
T Consensus 272 ---f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst--~~G~~~L~~~~~~~~~~~l~~~~~~~ 346 (503)
T PF10508_consen 272 ---FFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGST--VEGKQLLLQKQGPAMKHVLKAIGDAI 346 (503)
T ss_pred ---HHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCC--HHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 11222221 11222345777888888887777888887655321 1122333 123444555555566
Q ss_pred cCCCceehhhhhhhhHHHhcCC---CCHHH---HH---HHhcchhhHHHHHHHhcCCcccchhhhhhhhhhhhcCCCCCh
Q 019167 222 TSSNYVTRRQSLKLLSEFLLEP---PNSHI---MK---RYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVFVANPNKPH 292 (345)
Q Consensus 222 ~s~NYVTkRQSLKLLgelLldr---~N~~v---M~---~Yi~~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFVANP~K~~ 292 (345)
.++.=-.|--+|.=|+.++.-. .+.++ .. ...++.....++|.+++.+=.-|+.-||++++-.++-| -
T Consensus 347 ~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~---W 423 (503)
T PF10508_consen 347 KSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQP---W 423 (503)
T ss_pred cCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCH---H
Confidence 6665555666777777775322 33333 22 34555555669999999999999999999999988876 3
Q ss_pred HHHHHHHHhHHHHHHHHhccCCCCCCCCcccHHHHHHHHHHHhhcCC
Q 019167 293 EVKVILAKNHEKLLELLRNLSVGKGADDDQFEEEKELIMKEIERVSG 339 (345)
Q Consensus 293 ~I~~IL~~Nr~kLl~fl~~f~~d~~~~DeqF~dEK~~lI~~I~~L~~ 339 (345)
.+.. +.+...+++|+-+=.++. |..=.+=|-.+|+.|.+.+.
T Consensus 424 g~~~--i~~~~gfie~lldr~~E~---~K~~ke~K~~ii~~l~~~~~ 465 (503)
T PF10508_consen 424 GQRE--ICSSPGFIEYLLDRSTET---TKEGKEAKYDIIKALAKSST 465 (503)
T ss_pred HHHH--HHhCccHHhhhcCCCCCC---CHHHHHHHHHHHHHHHhccc
Confidence 3443 556777999987766664 55556678889998886654
No 18
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=65.59 E-value=83 Score=27.58 Aligned_cols=134 Identities=21% Similarity=0.296 Sum_probs=80.6
Q ss_pred hhhhHHHHHHHHhhccc--CCccchhHHhh--h-----cHhHHHHHHhcccCcchhhhhhHHHHHHhhhhHHHHHHhcch
Q 019167 97 ARKDLVHCWSILLKQKV--DSTYCCVQFIE--N-----HFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILESA 167 (345)
Q Consensus 97 ~RKdv~~If~~llr~~~--~~~~p~v~Yl~--~-----~peil~~Ll~gY~~~dial~~G~mLRecik~e~la~~iL~~~ 167 (345)
..+|+..||..+-+-.. .+.....+++. . --+++..++.++ |..++..-+|..+.. ++.++
T Consensus 4 ~~~Da~~vf~~Lc~L~~~~~~~~~~~~~~~~~~~~k~l~LeLl~~iL~~~---------~~~f~~~~~~~~l~~-~lk~~ 73 (168)
T PF12783_consen 4 YVKDAFLVFRDLCSLSSKPSDPGNSPDFLSHDERSKLLSLELLESILENH---------GSVFRSSEEHPSLIN-LLKDD 73 (168)
T ss_pred hHHHHHHHHHHHHHHhCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHhC---------HHHHhCCcchHHHHH-HHHHH
Confidence 35788899887665441 11111122321 1 134444444432 333321113334443 44444
Q ss_pred hHHHhhhhccCCCchhhhhhHHHHHHhhhcChhhHHHHHHhhHHHHHHHHHh-hhcCCC--ceehhhhhhhhHHHhcCCC
Q 019167 168 SFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEK-LLTSSN--YVTRRQSLKLLSEFLLEPP 244 (345)
Q Consensus 168 ~f~~fF~y~~~~~FeiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~~n~-LL~s~N--YVTkRQSLKLLgelLldr~ 244 (345)
..-.+.+.+..+.|.|..-+...|.-++.+++ .++..-.+.|+..+.. ++++++ |=.|.-+|..+.++.-++.
T Consensus 74 l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~----~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~ 149 (168)
T PF12783_consen 74 LCPALLKNLSSSDFPIFSRSLRIFLTLLSRFR----SHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELCKDPQ 149 (168)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChh
Confidence 44555566666779999999999999987654 3555568899998885 888877 6666678998888887664
No 19
>PF15087 DUF4551: Protein of unknown function (DUF4551)
Probab=64.31 E-value=28 Score=37.85 Aligned_cols=213 Identities=16% Similarity=0.145 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHhccccchhhHHHhHHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhhcHHHHHHhhCCCCCc
Q 019167 16 EVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKEDVLILLVHKLPILGW 95 (345)
Q Consensus 16 e~Vr~~~e~l~~l~~~~~~~~~~~~k~~ee~~K~l~~mk~il~g~~e~ep~~e~~~qL~~ei~~~dll~~Li~~l~~L~f 95 (345)
=+|.++.|.|..=.+..+...+..+--.=+++=.+.++=..++-.+|.+|+-=.+..--+...-.++|..| .+-|.++=
T Consensus 373 Flv~~L~eyLp~s~~~~~~q~~~qrADeL~~~i~i~qtL~lMFReTE~e~sRln~L~A~kg~l~~~LL~~L-i~~P~~p~ 451 (617)
T PF15087_consen 373 FLVQTLHEYLPESRSKNGLQNKSQRADELELCILIIQTLGLMFRETEVEPSRLNTLAAKKGALFSNLLVIL-ICEPQIPK 451 (617)
T ss_pred HHHHHHHHhcccCcCccccccccchHHHHHHHHHHHHHHHHHHhccccchhhHHHHHhhhhhhHHHHHHHH-hcCccccc
Confidence 35888888777644322211111111112344556677777888888887633222222233333444433 23444431
Q ss_pred hhhh-hHHHHHHHHhhcccCCccc--hhHHhhhcHhHHHHHHh-c-----ccCcchhhhhhHHHHHHhhhhHHHHHHhcc
Q 019167 96 EARK-DLVHCWSILLKQKVDSTYC--CVQFIENHFELLDFLVV-C-----YDNKEVALHCGIMLRECIKFPSLARYILES 166 (345)
Q Consensus 96 E~RK-dv~~If~~llr~~~~~~~p--~v~Yl~~~peil~~Ll~-g-----Y~~~dial~~G~mLRecik~e~la~~iL~~ 166 (345)
-..- |+ +.-+. ..-..+..+. ..+|+-+-..+|.-++- | ....+-.++.|-|+|..=-|
T Consensus 452 ~~~~~~~-~~~~~-~~~~~d~elq~L~~EYtdaAtalLfEillv~~q~s~~~~~~~fl~i~Wi~~~Lq~~---------- 519 (617)
T PF15087_consen 452 SCPPFDI-QLVAD-SSMSFDAELQKLLLEYTDAATALLFEILLVFQQGSLGLGSDKFLAISWIMRVLQSH---------- 519 (617)
T ss_pred cCCcccc-ccccc-cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCchhHHHHHHHHhcC----------
Confidence 0000 00 00000 0000111111 24465555544444432 1 22456677888888754444
Q ss_pred hhHHHhhhhccCCC----------chhhhhhHHHHH---Hhhh--cChhhHHHHHHhhHHHHHHHHHhh--hcC---CCc
Q 019167 167 ASFELFFKFVELPT----------FDVASDAFSTFK---DLLT--KHLTVVSEYLTAHYDEFFDLYEKL--LTS---SNY 226 (345)
Q Consensus 167 ~~f~~fF~y~~~~~----------FeiasDAf~Tfk---ellt--~Hk~lvaefl~~Nyd~Ff~~~n~L--L~s---~NY 226 (345)
|.+-.|..|+-... +=-.+||.--|+ -|.+ .|.+-.|+|+.+||.+=|..|-+. ++. .-|
T Consensus 520 p~~~~Fv~~~v~q~v~~LS~s~~~~LSp~qaVLlyQq~~iL~~cLq~s~~la~~ir~~yrEEFRYfI~~p~lekKLP~~Y 599 (617)
T PF15087_consen 520 PPLLSFVGRIVKQVVKVLSASQHEPLSPSQAVLLYQQFYILLSCLQYSKQLAEHIRNNYREEFRYFIKMPCLEKKLPPCY 599 (617)
T ss_pred CcHHHHHHHHHHHHHHHhcccccccCChhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhheeeeecchhhHhhCCCCC
Confidence 33444555443222 223345544443 3333 688999999999998877666553 343 678
Q ss_pred eehhhhhhhhHHHhc
Q 019167 227 VTRRQSLKLLSEFLL 241 (345)
Q Consensus 227 VTkRQSLKLLgelLl 241 (345)
=..+..++|++|+|.
T Consensus 600 PItqpT~~Li~evl~ 614 (617)
T PF15087_consen 600 PITQPTLQLIHEVLK 614 (617)
T ss_pred CCchHHHHHHHHHHH
Confidence 889999999999873
No 20
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=63.40 E-value=36 Score=33.06 Aligned_cols=111 Identities=13% Similarity=0.160 Sum_probs=62.0
Q ss_pred hHHHhhhhccCCCchhhhhhHHHHHHhhhcChhhHHHHHHhhHHHHHHHHHhhhcCCCceehhhhhhhhHHHhcCCCCHH
Q 019167 168 SFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSH 247 (345)
Q Consensus 168 ~f~~fF~y~~~~~FeiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~~n~LL~s~NYVTkRQSLKLLgelLldr~N~~ 247 (345)
.+..|+...+.++=-|.-=|...+-.++...+.-....-..-...|++.....+++++-=...-++..|++++-.+ .
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~---~ 182 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK---E 182 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH---H
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc---h
Confidence 4556667777666666666666666676644332222222333666766666666633222267799999999544 4
Q ss_pred HHHHHhcchhhHHHHHHHh-----cCCccc--chhhhhhhhh
Q 019167 248 IMKRYILEVRFLKVMMTLL-----KDSSKN--IQISAFHIFK 282 (345)
Q Consensus 248 vM~~Yi~~~~NLkliM~LL-----~d~sk~--Iq~EAFhvFK 282 (345)
....|+. .+.+..++.+| .+.+-+ +|+++-.++=
T Consensus 183 ~R~~f~~-~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lW 223 (312)
T PF03224_consen 183 YRQVFWK-SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLW 223 (312)
T ss_dssp HHHHHHT-HHHHHHHHHHHH---------HHHHHHHHHHHHH
T ss_pred hHHHHHh-cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHH
Confidence 4445666 99999999999 333333 5777765543
No 21
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.03 E-value=71 Score=36.07 Aligned_cols=129 Identities=19% Similarity=0.215 Sum_probs=82.7
Q ss_pred CHHHHHHHHHHHHh-hcHHHHHHhhCCCCCchhhhhHHHHHHHHhhcccCCccchhH-HhhhcHhHHHHHHhcccC----
Q 019167 66 NADQVLQLATEVCK-EDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQ-FIENHFELLDFLVVCYDN---- 139 (345)
Q Consensus 66 ~~e~~~qL~~ei~~-~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~-Yl~~~peil~~Ll~gY~~---- 139 (345)
+.+.-.++|..++. .|.+..|+..+...||-.|.-..++++++++..+. -++ -+..+|--+..|+.--.+
T Consensus 106 sdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~----e~q~~ll~~P~gIS~lmdlL~DsrE~ 181 (970)
T KOG0946|consen 106 SDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPT----ELQDALLVSPMGISKLMDLLRDSREP 181 (970)
T ss_pred hhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCH----HHHHHHHHCchhHHHHHHHHhhhhhh
Confidence 34556678888766 59999999999999999999999999999997652 233 444677666666553322
Q ss_pred --cchhhhhhHHHHHHhhhhHHHHHHhcchhHHHhhhhccC----CCchhhhhhHHHHHHhhhcChhh
Q 019167 140 --KEVALHCGIMLRECIKFPSLARYILESASFELFFKFVEL----PTFDVASDAFSTFKDLLTKHLTV 201 (345)
Q Consensus 140 --~dial~~G~mLRecik~e~la~~iL~~~~f~~fF~y~~~----~~FeiasDAf~Tfkellt~Hk~l 201 (345)
.|..+..-..-|+|-..+.+ +-..-.|..+|+-++. ..==|.-|++.-+.-||..|-+-
T Consensus 182 IRNe~iLlL~eL~k~n~~IQKl---VAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SN 246 (970)
T KOG0946|consen 182 IRNEAILLLSELVKDNSSIQKL---VAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISN 246 (970)
T ss_pred hchhHHHHHHHHHccCchHHHH---HHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcch
Confidence 12222233333333332222 2233457777777652 22346778888888888877543
No 22
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=62.54 E-value=1.3e+02 Score=30.15 Aligned_cols=140 Identities=14% Similarity=0.245 Sum_probs=100.4
Q ss_pred HHHHHHhhcHHHHHHhhCCCCCchhhhhHHHHHHHHhhcccCCccchhHHhhhcHhHHHHHHhcccC-------cchhhh
Q 019167 73 LATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYDN-------KEVALH 145 (345)
Q Consensus 73 L~~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~Ll~gY~~-------~dial~ 145 (345)
+|.-+..++.+..+......=.||.-=|+-..|..++-+.. ..+.+|+..|.+-+.....+-=. ..+-=.
T Consensus 156 l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk---~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL 232 (335)
T PF08569_consen 156 LAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHK---KLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL 232 (335)
T ss_dssp HHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSH---HHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence 55555556677778888888999999999999998887643 25688998876554443332111 233345
Q ss_pred hhHHHHHHhhhhHHHHHHhcchhHHHhhhhccCCCchhhhhhHHHHHHhhh-cCh-hhHHHHHHhhHHHHHH
Q 019167 146 CGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLT-KHL-TVVSEYLTAHYDEFFD 215 (345)
Q Consensus 146 ~G~mLRecik~e~la~~iL~~~~f~~fF~y~~~~~FeiasDAf~Tfkellt-~Hk-~lvaefl~~Nyd~Ff~ 215 (345)
.|.+|-+=.-++.+.+|+=+.+.+.-+...+..+.=-|..+||..||--.. .|| +-|.+.|..|=++...
T Consensus 233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~ 304 (335)
T PF08569_consen 233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLR 304 (335)
T ss_dssp HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHH
T ss_pred HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Confidence 688887777778888888888888888888888888899999999997655 333 5677999999777553
No 23
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=61.29 E-value=40 Score=30.07 Aligned_cols=81 Identities=19% Similarity=0.325 Sum_probs=52.5
Q ss_pred hHHHhhhhccCCCchhhhhhHHHHHHhhhc-ChhhHHHHHHhhHHHHHHHHHhhhcCCCc-----eehhhhhhhhHHHhc
Q 019167 168 SFELFFKFVELPTFDVASDAFSTFKDLLTK-HLTVVSEYLTAHYDEFFDLYEKLLTSSNY-----VTRRQSLKLLSEFLL 241 (345)
Q Consensus 168 ~f~~fF~y~~~~~FeiasDAf~Tfkellt~-Hk~lvaefl~~Nyd~Ff~~~n~LL~s~NY-----VTkRQSLKLLgelLl 241 (345)
.|+.+...+.-++=+|++-|-.-|.+++.+ ++.++ .+++...+..++.--+++.| -.++.-.+.|-+.+.
T Consensus 64 l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i----~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~ 139 (178)
T PF12717_consen 64 LFSRILKLLVDENPEIRSLARSFFSELLKKRNPNII----YNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFID 139 (178)
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHH----HHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcC
Confidence 458888889999999999999999999887 55555 44555556566655554333 334444455444444
Q ss_pred -CCCCHHHHHHH
Q 019167 242 -EPPNSHIMKRY 252 (345)
Q Consensus 242 -dr~N~~vM~~Y 252 (345)
|+...++..+.
T Consensus 140 ~d~~~~~l~~kl 151 (178)
T PF12717_consen 140 KDKQKESLVEKL 151 (178)
T ss_pred cHHHHHHHHHHH
Confidence 44444444443
No 24
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=58.41 E-value=19 Score=27.24 Aligned_cols=53 Identities=19% Similarity=0.296 Sum_probs=40.5
Q ss_pred HHHHHHHhhhcCCCceehhhhhhhhHHHhcCCCCHHHHHHHhcchhhHHHHHHHhcCCccc-chhhhh
Q 019167 212 EFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKN-IQISAF 278 (345)
Q Consensus 212 ~Ff~~~n~LL~s~NYVTkRQSLKLLgelLldr~N~~vM~~Yi~~~~NLkliM~LL~d~sk~-Iq~EAF 278 (345)
+....+..++.++|..+|++++.-||.+ .+++-+..+..+|.+.+.. ++.+|.
T Consensus 31 ~~~~~L~~~l~d~~~~vr~~a~~aL~~i--------------~~~~~~~~L~~~l~~~~~~~vr~~a~ 84 (88)
T PF13646_consen 31 EAIPALIELLKDEDPMVRRAAARALGRI--------------GDPEAIPALIKLLQDDDDEVVREAAA 84 (88)
T ss_dssp HHHHHHHHHHTSSSHHHHHHHHHHHHCC--------------HHHHTHHHHHHHHTC-SSHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHh--------------CCHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 4566777888999999999999999976 4777888888888775443 466553
No 25
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=57.30 E-value=8.1 Score=29.34 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=43.6
Q ss_pred hhcCCCceehhhhhhhhHHHhcCCCCHHHHHHHhcchhhHHHHHHHhcCCcccchhhhhhhhhhh
Q 019167 220 LLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVF 284 (345)
Q Consensus 220 LL~s~NYVTkRQSLKLLgelLldr~N~~vM~~Yi~~~~NLkliM~LL~d~sk~Iq~EAFhvFKvF 284 (345)
|..++|.-.|+.+++.|| .+.+++-+..+..+|+|++..+|..|.....-+
T Consensus 8 l~~~~~~~vr~~a~~~L~--------------~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 8 LQNDPDPQVRAEAARALG--------------ELGDPEAIPALIELLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp HHTSSSHHHHHHHHHHHH--------------CCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred HhcCCCHHHHHHHHHHHH--------------HcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 448999999999999999 445668899999999999999999998777654
No 26
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=51.68 E-value=39 Score=28.48 Aligned_cols=77 Identities=17% Similarity=0.370 Sum_probs=55.6
Q ss_pred HHHHHhhHHHHHHHHHh-hhcCC---CceehhhhhhhhHHHhcCCCCHHHHHHHhcchhhHHHHHHHhcCC--cccchhh
Q 019167 203 SEYLTAHYDEFFDLYEK-LLTSS---NYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDS--SKNIQIS 276 (345)
Q Consensus 203 aefl~~Nyd~Ff~~~n~-LL~s~---NYVTkRQSLKLLgelLldr~N~~vM~~Yi~~~~NLkliM~LL~d~--sk~Iq~E 276 (345)
++||.+|.=..++.++. +.... .|.-|+++++=+|+++- +|-.+|++.-- -||..|+.- .+.+|.+
T Consensus 2 ~~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~------~~g~~i~~a~p--QI~acL~saL~~~eL~~~ 73 (107)
T smart00802 2 ADFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIK------LMGKHISSALP--QIMACLQSALEIPELRSL 73 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHH------HHHHHHHHHHH--HHHHHHHHHhCchhHHHH
Confidence 67899998777777774 55555 78889999999999995 45566665322 344444332 3349999
Q ss_pred hhhhhhhhhcC
Q 019167 277 AFHIFKVFVAN 287 (345)
Q Consensus 277 AFhvFKvFVAN 287 (345)
||.+..+||-.
T Consensus 74 al~~W~~~i~~ 84 (107)
T smart00802 74 ALRCWHVLIKT 84 (107)
T ss_pred HHHHHHHHHHh
Confidence 99999999965
No 27
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=50.96 E-value=11 Score=28.69 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=16.9
Q ss_pred hhHHhhhcHhHHHHHHhcc
Q 019167 119 CVQFIENHFELLDFLVVCY 137 (345)
Q Consensus 119 ~v~Yl~~~peil~~Ll~gY 137 (345)
.|.||++||+++.-|..|=
T Consensus 5 iV~YLv~nPevl~kl~~g~ 23 (57)
T PF05952_consen 5 IVNYLVQNPEVLEKLKEGE 23 (57)
T ss_pred HHHHHHHChHHHHHHHcCC
Confidence 4899999999999998863
No 28
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=50.13 E-value=2.9e+02 Score=28.00 Aligned_cols=82 Identities=17% Similarity=0.287 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHhhh-cCCCceehhhhhhhhHHHhcCCCCHHHHHHHhcc-hhhHHHHHHHhcCCcccchhhhhhhhhhhh
Q 019167 208 AHYDEFFDLYEKLL-TSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILE-VRFLKVMMTLLKDSSKNIQISAFHIFKVFV 285 (345)
Q Consensus 208 ~Nyd~Ff~~~n~LL-~s~NYVTkRQSLKLLgelLldr~N~~vM~~Yi~~-~~NLkliM~LL~d~sk~Iq~EAFhvFKvFV 285 (345)
.|.......+.+-+ ..+..-.++.+++-+|.+-. +|..+ ..-+..++.+|+.....+.-|+.+.+.-.+
T Consensus 335 ~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~---------~~~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll 405 (526)
T PF01602_consen 335 SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAE---------KFPPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLL 405 (526)
T ss_dssp HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHH---------HHGSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHh---------ccCchHHHHHHHHHHhhhhccccccchHHHHHHHHh
Confidence 45555555555555 33344466677777766654 55444 456789999999999999999888877555
Q ss_pred -cCCCCChHHHHHH
Q 019167 286 -ANPNKPHEVKVIL 298 (345)
Q Consensus 286 -ANP~K~~~I~~IL 298 (345)
-+|.....+...|
T Consensus 406 ~~~~~~~~~~l~~L 419 (526)
T PF01602_consen 406 SNNPELREKILKKL 419 (526)
T ss_dssp HHSTTTHHHHHHHH
T ss_pred hcChhhhHHHHHHH
Confidence 4566655555444
No 29
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.76 E-value=2.2e+02 Score=32.48 Aligned_cols=73 Identities=16% Similarity=0.268 Sum_probs=41.4
Q ss_pred HHHHHhhHHHHHHHHHhhhcCCCceehh------hhhhhhHHHh------cCCCCHHHHHHHhcchhhHHHHHHHhcCCc
Q 019167 203 SEYLTAHYDEFFDLYEKLLTSSNYVTRR------QSLKLLSEFL------LEPPNSHIMKRYILEVRFLKVMMTLLKDSS 270 (345)
Q Consensus 203 aefl~~Nyd~Ff~~~n~LL~s~NYVTkR------QSLKLLgelL------ldr~N~~vM~~Yi~~~~NLkliM~LL~d~s 270 (345)
-||+++|.+.|...|.++++.+|=.-.- +=.+|=+++= ..| +-+....|+ ++..-.+-+||++-|
T Consensus 225 PEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~k-YeEef~~fl--~~fv~~~W~LL~~~s 301 (960)
T KOG1992|consen 225 PEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATK-YEEEFQPFL--PDFVTATWNLLVSTS 301 (960)
T ss_pred hHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHh-hHHHHHhhH--HHHHHHHHHHHHhcC
Confidence 3899999999999999999866532110 1112211111 111 111222222 234456778999988
Q ss_pred ccchhhhh
Q 019167 271 KNIQISAF 278 (345)
Q Consensus 271 k~Iq~EAF 278 (345)
+.-.++.-
T Consensus 302 ~~~kyD~L 309 (960)
T KOG1992|consen 302 PDTKYDYL 309 (960)
T ss_pred CCccHHHH
Confidence 88776643
No 30
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=43.48 E-value=1.5e+02 Score=26.73 Aligned_cols=155 Identities=16% Similarity=0.251 Sum_probs=85.6
Q ss_pred cCCCchhhhhhHHHHHHhhhcC--hhhHHHHHHhhHHHHHHHHHhhhcCCCceehhhhhhhhHHHhcCCCCHHHHHHHhc
Q 019167 177 ELPTFDVASDAFSTFKDLLTKH--LTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYIL 254 (345)
Q Consensus 177 ~~~~FeiasDAf~Tfkellt~H--k~lvaefl~~Nyd~Ff~~~n~LL~s~NYVTkRQSLKLLgelLldr~N~~vM~~Yi~ 254 (345)
...+.+.--+|+..++.++..| ......|+. .+..+...+...+.+.+--.-+.++.+++++...=.+. |..|
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~-~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~--~~~~-- 91 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVE-CLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH--FEPY-- 91 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHH-HHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG--GHHH--
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHH-HHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh--HHHH--
Confidence 5677888899999999999988 222223222 23355566777888888888899999998887432222 4444
Q ss_pred chhhHHHHHHHhcCCcccchhhhhhhhhhhhcCCC-CChHHHHHHHH--------hHHHHHHHHhccCCCCCCCCcccHH
Q 019167 255 EVRFLKVMMTLLKDSSKNIQISAFHIFKVFVANPN-KPHEVKVILAK--------NHEKLLELLRNLSVGKGADDDQFEE 325 (345)
Q Consensus 255 ~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFVANP~-K~~~I~~IL~~--------Nr~kLl~fl~~f~~d~~~~DeqF~d 325 (345)
-+.-+-.++..+.|+.+.|+-.|-+...-++.+-. .+.-+..++.. -|...+.|+...-..-..+...+..
T Consensus 92 ~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~ 171 (228)
T PF12348_consen 92 ADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK 171 (228)
T ss_dssp HHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence 34456677888899999999999999999887755 34332555543 3556666766654433112344544
Q ss_pred HH--HHHHHHHhh
Q 019167 326 EK--ELIMKEIER 336 (345)
Q Consensus 326 EK--~~lI~~I~~ 336 (345)
.. ..+++.|..
T Consensus 172 ~~~~~~l~~~l~~ 184 (228)
T PF12348_consen 172 SAFLKQLVKALVK 184 (228)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHH
Confidence 44 446665554
No 31
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.95 E-value=1.2e+02 Score=28.82 Aligned_cols=68 Identities=19% Similarity=0.134 Sum_probs=44.7
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHhccccchhhHHHhHHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHh
Q 019167 3 FSFFKPSRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCK 79 (345)
Q Consensus 3 ~~f~~~k~~k~P~e~Vr~~~e~l~~l~~~~~~~~~~~~k~~ee~~K~l~~mk~il~g~~e~ep~~e~~~qL~~ei~~ 79 (345)
=+|+++| ||.|.-. +.+++..+++.+..-+++=.+...|++||=.+|+.+= ..|..+++.|=|-.+.+
T Consensus 3 RiFG~~k-~k~p~ps---L~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R-----~gpaq~~~KqrAlrVLk 70 (218)
T KOG1655|consen 3 RIFGRGK-PKEPPPS---LQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKTR-----PGPAQNALKQRALRVLK 70 (218)
T ss_pred ccccCCC-CCCCChh---HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcC-----CCcchhHHHHHHHHHHH
Confidence 4687775 7777654 4555555554332235666788899999999999883 33556666666655544
No 32
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=39.53 E-value=74 Score=28.63 Aligned_cols=65 Identities=17% Similarity=0.331 Sum_probs=42.1
Q ss_pred HHHHHHhcchhHHHhhhhccCCCchhhhhhHHHHHHhhhcChhhHHHHHHh---hHHHHHHHHHhhhcCCCce
Q 019167 158 SLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTA---HYDEFFDLYEKLLTSSNYV 227 (345)
Q Consensus 158 ~la~~iL~~~~f~~fF~y~~~~~FeiasDAf~Tfkellt~Hk~lvaefl~~---Nyd~Ff~~~n~LL~s~NYV 227 (345)
-..+|+.+|+.|.++++|++.+.|.=.-.-+.+..|.-+ +.+||.+ +...+++.++.++.-+++.
T Consensus 23 i~~~Y~~~D~efq~~~~yl~s~~f~~l~~~l~~~pE~~~-----l~~yL~~~gldv~~~i~~i~~~l~~~~~~ 90 (179)
T PF06757_consen 23 IVQRYYLEDAEFQAAVRYLNSSEFKQLWQQLEALPEVKA-----LLDYLESAGLDVYYYINQINDLLGLPPLN 90 (179)
T ss_pred HHHHHHHcCHHHHHHHHHHcChHHHHHHHHHHcCHHHHH-----HHHHHHHCCCCHHHHHHHHHHHHcCCcCC
Confidence 446688899999999999998877544333333333322 4466663 2344677777777666653
No 33
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=38.26 E-value=2.5e+02 Score=28.17 Aligned_cols=114 Identities=17% Similarity=0.228 Sum_probs=66.5
Q ss_pred HHHHHHHhhhcC-CCceehhhhhhhhHHHhcCCCCHHHHHHHhcchhhHHHHHHHhcCCcccchhhhhhhhhhhh--cCC
Q 019167 212 EFFDLYEKLLTS-SNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVFV--ANP 288 (345)
Q Consensus 212 ~Ff~~~n~LL~s-~NYVTkRQSLKLLgelLldr~N~~vM~~Yi~~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFV--ANP 288 (345)
.|.++..+|+.+ ++|+.==|.=-.+--+|-++. ...+=--.+=|++.-.-+++....++.+||..+|.+| .+|
T Consensus 232 ~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~~~~----~~~w~~~n~wL~v~e~cFn~~d~~~k~~A~~aW~~liy~~~~ 307 (372)
T PF12231_consen 232 LYCERLKEMIKSKDEYKLAMQIWSVVILLLGSSR----LDSWEHLNEWLKVPEKCFNSSDPQVKIQAFKAWRRLIYASNP 307 (372)
T ss_pred HHHHHHHHHHhCcCCcchHHHHHHHHHHHhCCch----hhccHhHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhcC
Confidence 345566677777 777655444333333332211 2233333455788888999999999999999999877 343
Q ss_pred --CCChHHHHHHHHhHHHHHHHHhccCCCCCCCCcccHHHHHHHHHHHhhc
Q 019167 289 --NKPHEVKVILAKNHEKLLELLRNLSVGKGADDDQFEEEKELIMKEIERV 337 (345)
Q Consensus 289 --~K~~~I~~IL~~Nr~kLl~fl~~f~~d~~~~DeqF~dEK~~lI~~I~~L 337 (345)
..+++..+.|.+ =+...+.... .+.+-.+=+.+++..+-+|
T Consensus 308 ~~~~~~k~l~lL~~------Pl~~~l~~~~--~~~~~~~~~~~ll~~l~~l 350 (372)
T PF12231_consen 308 NELTSPKRLKLLCQ------PLSSQLRREK--SSKTKEEVWWYLLYSLCNL 350 (372)
T ss_pred CccccHHHHHHHHH------HHHHHhCccc--cccccHHHHHHHHHHHhch
Confidence 334444444332 1223333333 3443435688888877765
No 34
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=36.60 E-value=68 Score=28.70 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhhcH
Q 019167 40 EKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKEDV 82 (345)
Q Consensus 40 ~k~~ee~~K~l~~mk~il~g~~e~ep~~e~~~qL~~ei~~~dl 82 (345)
++..+|+.|-|..|-+-+..+.=..|.-+...+|++++-..|+
T Consensus 64 kr~~~D~~KRL~iLfd~ln~g~Ls~~v~~~L~~L~~aL~~~d~ 106 (157)
T PF07304_consen 64 KRVVDDIEKRLNILFDHLNNGKLSKPVVDKLHQLAQALQARDY 106 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-S-HHHHHHHHHHHHHHHHT-H
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCH
Confidence 4567999999999999988666566778899999999977764
No 35
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=35.98 E-value=86 Score=30.41 Aligned_cols=126 Identities=25% Similarity=0.333 Sum_probs=68.4
Q ss_pred hhhhhhHHHHHHhhhcChhhHHHHHHhhHHHHHHHHHhhhc--CCCceehhhhhhhhHHHhcCCC-CHHHHHHHhcchh-
Q 019167 182 DVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLT--SSNYVTRRQSLKLLSEFLLEPP-NSHIMKRYILEVR- 257 (345)
Q Consensus 182 eiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~~n~LL~--s~NYVTkRQSLKLLgelLldr~-N~~vM~~Yi~~~~- 257 (345)
.|+.|..+-++.+-..-++-=.+.+..+-+....-+-.||. ++|-=|.+..|-+++|++.+.. ..+.+..+-..++
T Consensus 25 ~is~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~ 104 (312)
T PF03224_consen 25 LISEEDLSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDS 104 (312)
T ss_dssp SS-HHHHHHHHHHHHHHH-------------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH
T ss_pred CCCHHHHHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccc
Confidence 56677777777765543333334665444333333333332 6788899999999999998875 5555555554333
Q ss_pred -hHHHHHHHhcCCcccchhhhhhhhhhhhcC-CCCChH-HHHHHHHhHHHHHHHHhc
Q 019167 258 -FLKVMMTLLKDSSKNIQISAFHIFKVFVAN-PNKPHE-VKVILAKNHEKLLELLRN 311 (345)
Q Consensus 258 -NLkliM~LL~d~sk~Iq~EAFhvFKvFVAN-P~K~~~-I~~IL~~Nr~kLl~fl~~ 311 (345)
-....+.+|..+...|+.-|.+++-.+.+. |..+.. +.++| ..++.++.+
T Consensus 105 ~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l----~~ll~~L~~ 157 (312)
T PF03224_consen 105 DPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEAL----PKLLQWLSS 157 (312)
T ss_dssp --HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHH----HHHHHHHH-
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHH----HHHHHHHHH
Confidence 588889999999999999999999887764 444443 34444 678888877
No 36
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.32 E-value=4.6e+02 Score=28.20 Aligned_cols=207 Identities=18% Similarity=0.208 Sum_probs=127.3
Q ss_pred hCCCCCchhhhhHHHHHHHHhhcc----cCCccch-hHHhhh-cHhHHHHHHhcccCc-chhhhhhHHHHHHhhhhHHHH
Q 019167 89 KLPILGWEARKDLVHCWSILLKQK----VDSTYCC-VQFIEN-HFELLDFLVVCYDNK-EVALHCGIMLRECIKFPSLAR 161 (345)
Q Consensus 89 ~l~~L~fE~RKdv~~If~~llr~~----~~~~~p~-v~Yl~~-~peil~~Ll~gY~~~-dial~~G~mLRecik~e~la~ 161 (345)
.-|.+.||+---.+.|=++..-+. .++..|. +.-+.. ++++-..-+..-.+. -=...|-...+.|---++|++
T Consensus 122 ~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~ 201 (514)
T KOG0166|consen 122 DNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLR 201 (514)
T ss_pred CChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHH
Confidence 347778888888888876533221 1344554 333332 556555544422210 001122222333333356777
Q ss_pred HHhcch-------hHHHhhhhcc----CCCchhhhhhHHHHHHhhhcChhhHH-------HHHHhhHHH---------HH
Q 019167 162 YILESA-------SFELFFKFVE----LPTFDVASDAFSTFKDLLTKHLTVVS-------EYLTAHYDE---------FF 214 (345)
Q Consensus 162 ~iL~~~-------~f~~fF~y~~----~~~FeiasDAf~Tfkellt~Hk~lva-------efl~~Nyd~---------Ff 214 (345)
.+..+. ..|-+..... .|.|+..+-++.++-.++-..-.-|. .||+++-+. ..
T Consensus 202 ~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv 281 (514)
T KOG0166|consen 202 LLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVV 281 (514)
T ss_pred HhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccch
Confidence 666554 4687777765 66799999999988877764433222 566643332 33
Q ss_pred HHHHhhhcCCCceehhhhhhhhHHHhcCCCCHHHHHHHhcchhhHHHHHHHhc-CCcccchhhhhhhhhhhhcCCCCChH
Q 019167 215 DLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLK-DSSKNIQISAFHIFKVFVANPNKPHE 293 (345)
Q Consensus 215 ~~~n~LL~s~NYVTkRQSLKLLgelLldr~N~~vM~~Yi~~~~NLkliM~LL~-d~sk~Iq~EAFhvFKvFVANP~K~~~ 293 (345)
.....||.+..+-++-=+|+.+|-|.. -...-+.-|-+..-|..+++||+ ++.++|.=||.-+--=..| ..+..
T Consensus 282 ~~LV~lL~~~~~~v~~PaLRaiGNIvt---G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~~~q 356 (514)
T KOG0166|consen 282 PRLVDLLGHSSPKVVTPALRAIGNIVT---GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA--GNQEQ 356 (514)
T ss_pred HHHHHHHcCCCcccccHHHhhccceee---ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc--CCHHH
Confidence 466789999999999999999999764 45566778888999999999999 6677799988744333333 23334
Q ss_pred HHHHHHH
Q 019167 294 VKVILAK 300 (345)
Q Consensus 294 I~~IL~~ 300 (345)
|+.++..
T Consensus 357 iqaVida 363 (514)
T KOG0166|consen 357 IQAVIDA 363 (514)
T ss_pred HHHHHHc
Confidence 5554444
No 37
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=35.01 E-value=84 Score=28.56 Aligned_cols=53 Identities=15% Similarity=0.365 Sum_probs=11.9
Q ss_pred hhhh--hHHHHHHhhhcChhhHHHHHHhhHHHHHHHHHhhhcCCCceehhhhhhhhHHHhc
Q 019167 183 VASD--AFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLL 241 (345)
Q Consensus 183 iasD--Af~Tfkellt~Hk~lvaefl~~Nyd~Ff~~~n~LL~s~NYVTkRQSLKLLgelLl 241 (345)
+..| +..++.+++..+++++...-..+.+.|++ +|...+ -..+-|++|+.|..
T Consensus 115 ~~~~~~~~d~l~~i~~dN~~L~~~i~e~~I~~~i~----ll~~~g--r~~~~L~~L~~lc~ 169 (207)
T PF01365_consen 115 IGYGLGALDVLTEIFRDNPELCESISEEHIEKFIE----LLRKHG--RQPRYLDFLSSLCV 169 (207)
T ss_dssp H-TTHHHHHHHHHHHTT--------------------------------------------
T ss_pred ccCCchHHHHHHHHHHCcHHHHHHhhHHHHHHHHH----HHHHcC--CChHHHHHHhhhcc
Confidence 4455 88899999999999999987777666664 454433 22335666766654
No 38
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=34.77 E-value=4.6e+02 Score=25.86 Aligned_cols=147 Identities=11% Similarity=0.234 Sum_probs=82.3
Q ss_pred hhhHHHHHHhhhcChhhHHHHHHhhHHHHHHHHHhhhcCCCceehhhhhhhhHHHhcCCCC--HHHHHHHhcch--hhHH
Q 019167 185 SDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPN--SHIMKRYILEV--RFLK 260 (345)
Q Consensus 185 sDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~~n~LL~s~NYVTkRQSLKLLgelLldr~N--~~vM~~Yi~~~--~NLk 260 (345)
..-|.-++.+...+.+....+=...+..+++...+-+.+.+.=+...+|+.|.+++..=.+ .++-..|...= +-|+
T Consensus 138 ~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~ 217 (319)
T PF08767_consen 138 VNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQ 217 (319)
T ss_dssp HHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 3334444444443333322222355667777777888999999999999999999975444 34444444432 4678
Q ss_pred HHHHHhcCCcccchhhh-----hhhhhhhhcCCCCCh--------------HHHHHHHH-----hHHHHHHHHhccCCCC
Q 019167 261 VMMTLLKDSSKNIQISA-----FHIFKVFVANPNKPH--------------EVKVILAK-----NHEKLLELLRNLSVGK 316 (345)
Q Consensus 261 liM~LL~d~sk~Iq~EA-----FhvFKvFVANP~K~~--------------~I~~IL~~-----Nr~kLl~fl~~f~~d~ 316 (345)
-|+..|.|++..-.|.. -++|++...+.-+.| -+.+.|.+ +.+.+..|+.++-...
T Consensus 218 ~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve~~~i~~~l~~~~~~n~~~v~~~i~~~L~~~Fp~l~~~qi~~fv~~Lf~~~ 297 (319)
T PF08767_consen 218 DIFSVLTDSDHKSGFKLQSQILSNLFRLVESGSIQVPLFDPGMSNQEFVSEYIANLLSEAFPNLSPKQIENFVQGLFELN 297 (319)
T ss_dssp HHHHHHHSTT-GGGHHHHHHHHHHHHHHHHTT-SSSSSSSTTT-HHHHHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHCcccHHHHHHHHHHHHHHHHHHHcccccccccCCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Confidence 88999999987754443 245555333322222 14444443 3556666666644444
Q ss_pred CCCCcccHH-HHHHHHH
Q 019167 317 GADDDQFEE-EKELIMK 332 (345)
Q Consensus 317 ~~~DeqF~d-EK~~lI~ 332 (345)
. +.+.|.. =|+|+|+
T Consensus 298 ~-d~~~Fk~~lrDFlI~ 313 (319)
T PF08767_consen 298 N-DPEKFKTHLRDFLIQ 313 (319)
T ss_dssp T--HHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHhhh
Confidence 2 4566655 3555554
No 39
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=34.10 E-value=2.6e+02 Score=24.27 Aligned_cols=60 Identities=20% Similarity=0.320 Sum_probs=42.2
Q ss_pred CCCchhhhhhHHHHHHhhhcChhhHHHHHHhhHHHHHHHHHhhhcCCCceehhhhhhhhHHHh
Q 019167 178 LPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFL 240 (345)
Q Consensus 178 ~~~FeiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~~n~LL~s~NYVTkRQSLKLLgelL 240 (345)
....++...+...+|.++..+.. ....+. ....+..+-..|.|+++=||.+++.+|+-+-
T Consensus 127 ~~~~~~~~~~l~Clkal~n~~~G-~~~v~~--~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 127 EEDIDIEHECLRCLKALMNTKYG-LEAVLS--HPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TTCHHHHHHHHHHHHHHTSSHHH-HHHHHC--SSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHccHHH-HHHHHc--CcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 35667778888888888876543 223333 3455677888899999999999999998653
No 40
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=33.48 E-value=1.2e+02 Score=20.14 Aligned_cols=37 Identities=14% Similarity=0.038 Sum_probs=31.8
Q ss_pred HHHHHHhhcHHHHHHhhCCCCCchhhhhHHHHHHHHh
Q 019167 73 LATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILL 109 (345)
Q Consensus 73 L~~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~ll 109 (345)
-.+.+...+.+..|+..|..-+.+.++.++-...++-
T Consensus 4 ~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 4 NKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3456778899999999999999999999988887764
No 41
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=32.41 E-value=2.7e+02 Score=31.98 Aligned_cols=64 Identities=27% Similarity=0.405 Sum_probs=46.9
Q ss_pred HHHHHhcchhHHHhhh---hccCCCchhhhhhHHHHHHhhhcChhhHHHHHHhhHHHHHHHHHhhhcCCC
Q 019167 159 LARYILESASFELFFK---FVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSN 225 (345)
Q Consensus 159 la~~iL~~~~f~~fF~---y~~~~~FeiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~~n~LL~s~N 225 (345)
++.+++.++.+|.... +--++-|.|+=-+..-+.+.=-.|.+ +|+++|.+.|..++.++++-.|
T Consensus 175 l~pfl~~~~~~~s~~~~~~~~llslfqv~L~~~r~~~~~~~qdi~---eFfEd~l~~~m~~F~klls~~~ 241 (947)
T COG5657 175 LCPFLFSSAYFWSMSENLDESLLSLFQVCLKLIRRYYDLGFQDIP---EFFEDNLDKFMEHFCKLLSYSN 241 (947)
T ss_pred HHHHHHhccchhHHhhcchhhHHHHHHHHHHHHHHHHHhcCCChh---HHHHHHHHHHHHHHHHHHhhcc
Confidence 4777788888887765 44466677755555555555555544 9999999999999999988554
No 42
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.35 E-value=8.7e+02 Score=28.34 Aligned_cols=199 Identities=12% Similarity=0.112 Sum_probs=96.9
Q ss_pred hhhhhcCCCCCCCCH--HHHHHHHHHHHhhcHHHHHHhhC--CCCCchhhhhHHHHHHHHhhcccCCc-cch---hHHhh
Q 019167 53 MRCMLSGDGEVEPNA--DQVLQLATEVCKEDVLILLVHKL--PILGWEARKDLVHCWSILLKQKVDST-YCC---VQFIE 124 (345)
Q Consensus 53 mk~il~g~~e~ep~~--e~~~qL~~ei~~~dll~~Li~~l--~~L~fE~RKdv~~If~~llr~~~~~~-~p~---v~Yl~ 124 (345)
+.+++-|+-+++|.. .+-.||.+---..+++.-|++-. ...++-.|..++.=|-|.+.++-.++ .|. --+=.
T Consensus 6 l~~~~~~T~d~d~~~R~~AE~~L~q~~K~pgFv~~lLqIi~~d~~~l~vrqaaaIYlKN~I~~~W~~~~~~g~~~~I~e~ 85 (1010)
T KOG1991|consen 6 LLQIFRATIDSDAKERKAAEQQLNQLEKQPGFVSSLLQIIMDDGVPLPVRQAAAIYLKNKITKSWSSHEAPGRPFGIPEE 85 (1010)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhcCCcHHHHHHHHHHccCCchhHHHHHHHHHHHHHHhcCCccCCCCCcCCCChH
Confidence 334444444443332 23333443333334444443322 34555555555555666655544333 221 11111
Q ss_pred h----cHhHHHHHHhcccCcchhhhhhHHHHHHhhhhHHHHHHhcc---hhHHHhhhhc----cCCCchhhhhhHHHHHH
Q 019167 125 N----HFELLDFLVVCYDNKEVALHCGIMLRECIKFPSLARYILES---ASFELFFKFV----ELPTFDVASDAFSTFKD 193 (345)
Q Consensus 125 ~----~peil~~Ll~gY~~~dial~~G~mLRecik~e~la~~iL~~---~~f~~fF~y~----~~~~FeiasDAf~Tfke 193 (345)
. +-.|+++++++. + ..-..+-+|+++ |++. +..|.+++++ +++.=-.-=-|+-.+.+
T Consensus 86 dk~~irenIl~~iv~~p---~---~iRvql~~~l~~------Ii~~D~p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~q 153 (1010)
T KOG1991|consen 86 DKAVIRENILETIVQVP---E---LIRVQLTACLNT------IIKADYPEQWPGLLDKIKNLLQSQDANHVYGALLCLYQ 153 (1010)
T ss_pred HHHHHHHHHHHHHHhCc---h---HHHHHHHHHHHH------HHhcCCcccchhHHHHHHHHhcCcchhhHHHHHHHHHH
Confidence 1 456777777762 2 112222233332 4443 2445666554 44332222346667777
Q ss_pred hhhcCh-------hhHHHHHHhhHHHHHHHHHhhhcCCCceehhhhhhhhHHHhc--CCCCHHHHHHHhcchhhHHHHHH
Q 019167 194 LLTKHL-------TVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLL--EPPNSHIMKRYILEVRFLKVMMT 264 (345)
Q Consensus 194 llt~Hk-------~lvaefl~~Nyd~Ff~~~n~LL~s~NYVTkRQSLKLLgelLl--dr~N~~vM~~Yi~~~~NLkliM~ 264 (345)
+..+|+ .-..+-+..=+...-+.+++|+..+|| ||.+++--||- --..+--.-++..+++.+---|.
T Consensus 154 L~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s~----~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~ 229 (1010)
T KOG1991|consen 154 LFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQESY----QSVELQKLILKIFKSLIYYELPLELSAPETFTSWME 229 (1010)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccch----HHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHH
Confidence 777666 122222233344555567789999987 66666655553 12222333456777777777777
Q ss_pred Hhc
Q 019167 265 LLK 267 (345)
Q Consensus 265 LL~ 267 (345)
|+.
T Consensus 230 l~l 232 (1010)
T KOG1991|consen 230 LFL 232 (1010)
T ss_pred HHH
Confidence 664
No 43
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=28.65 E-value=75 Score=22.33 Aligned_cols=48 Identities=21% Similarity=0.398 Sum_probs=37.9
Q ss_pred ehhhhhhhhHHHhcCCCCHHHHHHHhcchhhHHHHHHHhcCCcccchhhhhh
Q 019167 228 TRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFH 279 (345)
Q Consensus 228 TkRQSLKLLgelLldr~N~~vM~~Yi~~~~NLkliM~LL~d~sk~Iq~EAFh 279 (345)
+|+.++.-||+ +-......+..|+ ++-+..++.+|+|++..++-.|.+
T Consensus 3 vR~~A~~aLg~--l~~~~~~~~~~~~--~~~~~~L~~~L~d~~~~VR~~A~~ 50 (55)
T PF13513_consen 3 VRRAAAWALGR--LAEGCPELLQPYL--PELLPALIPLLQDDDDSVRAAAAW 50 (55)
T ss_dssp HHHHHHHHHHC--TTTTTHHHHHHHH--HHHHHHHHHHTTSSSHHHHHHHHH
T ss_pred HHHHHHHHHhh--HhcccHHHHHHHH--HHHHHHHHHHHcCCCHHHHHHHHH
Confidence 47889999999 4556777777755 567888999999999888877754
No 44
>PF10835 DUF2573: Protein of unknown function (DUF2573); InterPro: IPR020393 This entry contains proteins with no known function.
Probab=28.28 E-value=3.1e+02 Score=22.38 Aligned_cols=65 Identities=12% Similarity=0.088 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHH-HHHh--hcHHHHHHhhCCCCCchhhhhHHHHHHHH
Q 019167 40 EKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLAT-EVCK--EDVLILLVHKLPILGWEARKDLVHCWSIL 108 (345)
Q Consensus 40 ~k~~ee~~K~l~~mk~il~g~~e~ep~~e~~~qL~~-ei~~--~dll~~Li~~l~~L~fE~RKdv~~If~~l 108 (345)
++.++++.-.+....+.|.|++. ||...++-. .+|+ ....+.|+.|-...--|++-.+..||..+
T Consensus 2 ~~l~eq~dgLveKytELL~Ge~~----~e~~EkVk~W~lYshiaKsMPpL~kHWN~~~PeaK~~ik~li~~I 69 (82)
T PF10835_consen 2 EKLQEQFDGLVEKYTELLLGETS----PEMKEKVKQWALYSHIAKSMPPLAKHWNGTYPEAKEEIKELIEEI 69 (82)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHHhCcHHHHhhcccCchHHHHHHHHHHHH
Confidence 35678888888899999999886 444444333 3344 35678899999998899999998888763
No 45
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=27.48 E-value=1.6e+02 Score=27.59 Aligned_cols=17 Identities=12% Similarity=0.208 Sum_probs=11.4
Q ss_pred ChHHHHHHHHHHHHhcc
Q 019167 13 TPLEVVKATKVSLMALD 29 (345)
Q Consensus 13 ~P~e~Vr~~~e~l~~l~ 29 (345)
+|.+-+-.+++++..|.
T Consensus 24 ~~~~AIl~Lk~~~~~L~ 40 (191)
T PTZ00446 24 EIYKAILKNREAIDALE 40 (191)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 36666667777777664
No 46
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=27.36 E-value=5.4e+02 Score=24.39 Aligned_cols=123 Identities=15% Similarity=0.145 Sum_probs=62.4
Q ss_pred CCCh-HHHHHHHHHHHHhccccchhhHHHhHHHHHHHHHHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHhhcHHHHHHhh
Q 019167 11 PKTP-LEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSGDGEVEPNADQVLQLATEVCKEDVLILLVHK 89 (345)
Q Consensus 11 ~k~P-~e~Vr~~~e~l~~l~~~~~~~~~~~~k~~ee~~K~l~~mk~il~g~~e~ep~~e~~~qL~~ei~~~dll~~Li~~ 89 (345)
+.+| .+.++.+.+.+.. ++..+|+...+..++....|.+. ++.+-.+.-+.+.++..
T Consensus 6 e~~P~~~~a~~l~~~ir~------------k~~~eei~~~l~~i~~~~~~~~~-~~~~~~i~v~~q~ll~~--------- 63 (253)
T PF09090_consen 6 ESLPFHALAQKLLDLIRK------------KAPPEEISELLEEIEEPAEEHGS-DFDKFVIDVFVQCLLHI--------- 63 (253)
T ss_dssp TTSTTHHHHHHHHHHHHT------------T--HHHHHHHHTTS-------------HHHHHHHHHHHHHH---------
T ss_pred CCCccHHHHHHHHHHHHc------------CCCHHHHHHHHHhcccccccccc-chhhHHHHHHHHHHHHh---------
Confidence 4555 4567777777664 34568999999999998888776 55555555555555432
Q ss_pred CCCCCchhhhhHHHHHHHHhhcccCCccchhHHh-----hhcHhHHHHHHhcccC-cc-hhhhhhHHHHH-HhhhhHHHH
Q 019167 90 LPILGWEARKDLVHCWSILLKQKVDSTYCCVQFI-----ENHFELLDFLVVCYDN-KE-VALHCGIMLRE-CIKFPSLAR 161 (345)
Q Consensus 90 l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl-----~~~peil~~Ll~gY~~-~d-ial~~G~mLRe-cik~e~la~ 161 (345)
..|.+++.++.+-|+.. ....+ ..+-.||+.+++.+.+ |. .++.+-.||+- -+.-.+++.
T Consensus 64 -------GSkS~SH~~~~lery~~-----~Lk~l~~~~~~~q~~il~~v~~~W~~~~q~~~li~dkll~~~ii~~~~Vv~ 131 (253)
T PF09090_consen 64 -------GSKSFSHVLSALERYKE-----VLKELEAESEEAQFWILDAVFRFWKNNPQMGFLIIDKLLNYGIISPSAVVN 131 (253)
T ss_dssp -------TTTSHHHHHHHHHHTHH-----HHHHH-TSSHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTTSS-HHHHHH
T ss_pred -------cCchHHHHHHHHHHHHH-----HHHHhccCChHHHHHHHHHHHHHHhcCCceehHHHHHHHhcCCCCHHHHHH
Confidence 45777888877777653 23333 2245566667666654 22 22333333332 334445566
Q ss_pred HHhcch
Q 019167 162 YILESA 167 (345)
Q Consensus 162 ~iL~~~ 167 (345)
.++.++
T Consensus 132 w~f~~~ 137 (253)
T PF09090_consen 132 WVFSPE 137 (253)
T ss_dssp HHTSGG
T ss_pred HHcCcc
Confidence 666553
No 47
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=26.86 E-value=3.4e+02 Score=24.72 Aligned_cols=124 Identities=26% Similarity=0.397 Sum_probs=86.9
Q ss_pred hHHHhhhhccCCCc------hhhhhhHHHHHHhhhcChhhHH-HHHHhhHHHHHHHHHhhhcCCC--ceehhhhhhhhHH
Q 019167 168 SFELFFKFVELPTF------DVASDAFSTFKDLLTKHLTVVS-EYLTAHYDEFFDLYEKLLTSSN--YVTRRQSLKLLSE 238 (345)
Q Consensus 168 ~f~~fF~y~~~~~F------eiasDAf~Tfkellt~Hk~lva-efl~~Nyd~Ff~~~n~LL~s~N--YVTkRQSLKLLge 238 (345)
-+..+++.++.+.- ++-+=+++.|.+|+- |- +|+ +-++ +.|..+.-..+.+.. ==+.+.||-.|-.
T Consensus 12 Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMe-Hg-~vsWd~l~---~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs 86 (160)
T PF11841_consen 12 GLTLLIKMIEEGTEIQPCKGEILAYALTAFVELME-HG-IVSWDTLS---DSFIKKIASYVNSSAMDASILQRSLAILES 86 (160)
T ss_pred CHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHh-cC-cCchhhcc---HHHHHHHHHHHccccccchHHHHHHHHHHH
Confidence 34445555555442 566667888888665 63 444 5443 346666665555443 3456789999999
Q ss_pred HhcCCCCHHHHHHHhcchhhHHHHHHHhcCCcccchhhhhhhhh-hhh-cCCCCChHHHHHHH
Q 019167 239 FLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFK-VFV-ANPNKPHEVKVILA 299 (345)
Q Consensus 239 lLldr~N~~vM~~Yi~~~~NLkliM~LL~d~sk~Iq~EAFhvFK-vFV-ANP~K~~~I~~IL~ 299 (345)
+.+ |+.-.-.+|+..=-+-.+..+|.+.+.-||-.|.-++. +|. |++.|.+.+.+.|.
T Consensus 87 ~Vl---~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~~~l~ 146 (160)
T PF11841_consen 87 IVL---NSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIAETLS 146 (160)
T ss_pred HHh---CCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 998 55566678888888888999999999999999999988 444 67777777777664
No 48
>PF10350 DUF2428: Putative death-receptor fusion protein (DUF2428); InterPro: IPR019442 This domain is found in a family of proteins of unknown function that are conserved from plants to humans. Several of these proteins have been annotated as being HEAT repeat-containing proteins while others are designated as death-receptor interacting proteins, but neither of these has yet been confirmed. Aberrations in the genes encoding these proteins have been observed in benign thyroid adenomas [].
Probab=26.85 E-value=5.5e+02 Score=24.34 Aligned_cols=112 Identities=20% Similarity=0.292 Sum_probs=67.8
Q ss_pred cCCCchhhhhhHHHHHHhhh--cChh---hHHHHHHhhHHHHHHHHHhhhcCCCc--eehhhh-hhhhHHHhc--CCCCH
Q 019167 177 ELPTFDVASDAFSTFKDLLT--KHLT---VVSEYLTAHYDEFFDLYEKLLTSSNY--VTRRQS-LKLLSEFLL--EPPNS 246 (345)
Q Consensus 177 ~~~~FeiasDAf~Tfkellt--~Hk~---lvaefl~~Nyd~Ff~~~n~LL~s~NY--VTkRQS-LKLLgelLl--dr~N~ 246 (345)
+.+.|+-+.++|..+=..+. +++. +-.++|....+..-.. .... +|||=+ |.++-.=++ ++.+.
T Consensus 110 HrGAfe~~~~~f~~lc~~l~~~~~~~l~~LP~~WL~~~l~~i~~~------~~~~~~iTRRSAGLP~~i~aiL~ae~~~~ 183 (255)
T PF10350_consen 110 HRGAFESVYPGFTALCRRLWSSNNPELSELPEEWLDELLEAIESK------GQQKLSITRRSAGLPFLILAILSAEPSNS 183 (255)
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCchHHHhHHHHHHHHHHHHhcc------cccccccccccCcHHHHHHHHHhcCCCcc
Confidence 68899999999999888777 3333 4446666655443222 1234 898854 555433332 33322
Q ss_pred HHHHHHhcchhhHHHHHHHhcCCcc--------cchhhhhhhhhhhhcCCCCChHHHHHHH
Q 019167 247 HIMKRYILEVRFLKVMMTLLKDSSK--------NIQISAFHIFKVFVANPNKPHEVKVILA 299 (345)
Q Consensus 247 ~vM~~Yi~~~~NLkliM~LL~d~sk--------~Iq~EAFhvFKvFVANP~K~~~I~~IL~ 299 (345)
..+.++ -++.++.+-+.+.. .-|.-||||.|..+.+.+=+..+...+.
T Consensus 184 ~~ll~~-----~~~~Ll~ia~~~~~~~~~~~~d~~qVHAlNiLr~if~ds~L~~~~~~yi~ 239 (255)
T PF10350_consen 184 RPLLHR-----TMKSLLEIAKSPSTQHEDEKSDLPQVHALNILRAIFRDSKLSEDVSPYIE 239 (255)
T ss_pred hhHHHH-----HHHHHHHHhcCCcccccccccchHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 111111 12333334444443 4799999999999999888887777544
No 49
>PF14680 FANCI_HD2: FANCI helical domain 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=26.61 E-value=81 Score=30.06 Aligned_cols=48 Identities=19% Similarity=0.439 Sum_probs=32.1
Q ss_pred hhhHHHHHHhhhhHHHHHHhcchhHHHhhhhccCCCchhhhhhHHHHHHhhhcChhhHH---HHHHhhHHHHHH
Q 019167 145 HCGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVS---EYLTAHYDEFFD 215 (345)
Q Consensus 145 ~~G~mLRecik~e~la~~iL~~~~f~~fF~y~~~~~FeiasDAf~Tfkellt~Hk~lva---efl~~Nyd~Ff~ 215 (345)
=.=.+||-|+-+++-.|.+||... -+++++.+.++. ++|..|+..|++
T Consensus 34 EIlg~LRRCL~QQa~VR~~LY~gl-----------------------~~~v~~n~~l~~~iLd~L~~hf~~y~~ 84 (234)
T PF14680_consen 34 EILGILRRCLTQQADVRLMLYEGL-----------------------YDVVTRNPQLAPHILDMLLSHFKQYYE 84 (234)
T ss_dssp HHHHHHHGGGGS-HHHHHHHHHHH-----------------------HHHHHHSGGGHHHHHHHHHHHHHHHB-
T ss_pred HHHHHHHHHhcChHHHHHHHHHHH-----------------------HHHHHcCcccHHHHHHHHHHHHHHHhC
Confidence 334578999999999999999852 255666666655 555566666665
No 50
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=26.48 E-value=7.7e+02 Score=25.84 Aligned_cols=64 Identities=14% Similarity=0.228 Sum_probs=40.5
Q ss_pred HHHHHHhhhcCC-CceehhhhhhhhHHHhcCCCCHHHHHHHhcchhhHHHHHHHhcCCccc--chhhhhhh
Q 019167 213 FFDLYEKLLTSS-NYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKN--IQISAFHI 280 (345)
Q Consensus 213 Ff~~~n~LL~s~-NYVTkRQSLKLLgelLldr~N~~vM~~Yi~~~~NLkliM~LL~d~sk~--Iq~EAFhv 280 (345)
+++++...+.++ +==....++..|+++|.-+....+ |+... .++.++.+|+..+-+ +|+++..+
T Consensus 144 ~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~---f~~~~-~v~~L~~~L~~~~~~~Ql~Y~~ll~ 210 (429)
T cd00256 144 YFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFA---FVLAD-GVPTLVKLLSNATLGFQLQYQSIFC 210 (429)
T ss_pred HHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHH---HHHcc-CHHHHHHHHhhccccHHHHHHHHHH
Confidence 555666666543 122234457789999977665533 55544 899999999876644 56666544
No 51
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=26.30 E-value=4.3e+02 Score=31.36 Aligned_cols=74 Identities=18% Similarity=0.338 Sum_probs=55.5
Q ss_pred HHhhhcCCCceehhhhhhhhHHHhcCCCCH---HHHHHHhcchhhHHHHHHHhcCCcccchhhhhhhhhhhhcCCCCC
Q 019167 217 YEKLLTSSNYVTRRQSLKLLSEFLLEPPNS---HIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVFVANPNKP 291 (345)
Q Consensus 217 ~n~LL~s~NYVTkRQSLKLLgelLldr~N~---~vM~~Yi~~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFVANP~K~ 291 (345)
+-.|+.+++|--|+--+..+|++...--+- .-|.+=+.+ +-|-++|-.+.|-|..++.++.+||--.+.-+-+|
T Consensus 317 lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~-~~le~l~erl~Dvsa~vRskVLqv~~~l~~~~s~p 393 (1251)
T KOG0414|consen 317 LVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRD-ELLELLRERLLDVSAYVRSKVLQVFRRLFQQHSIP 393 (1251)
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHH-HHHHHHHHHhhcccHHHHHHHHHHHHHHHHccCCC
Confidence 334999999999999999999998754432 122333333 47889999999999999999999998665544443
No 52
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=25.68 E-value=83 Score=30.30 Aligned_cols=71 Identities=27% Similarity=0.334 Sum_probs=52.4
Q ss_pred HHhhhcCCCceehhhhhhhhHHHhcCCCCHHHHHHHhcchhhHHHHHHHhcCC-cccchhhhhhhhhhhhcCCCCC
Q 019167 217 YEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDS-SKNIQISAFHIFKVFVANPNKP 291 (345)
Q Consensus 217 ~n~LL~s~NYVTkRQSLKLLgelLldr~N~~vM~~Yi~~~~NLkliM~LL~d~-sk~Iq~EAFhvFKvFVANP~K~ 291 (345)
+-.||.++|=-||-|+||+|.-|= -...|++++=+..-+--.|.|+..+ ++.+-.++--+|--.-.+=+|+
T Consensus 139 ll~LL~~G~~~~k~~vLk~L~nLS----~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 139 LLSLLSSGSEKTKVQVLKVLVNLS----ENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred HHHHHHcCChHHHHHHHHHHHHhc----cCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 346999999999999999998874 4556677777777888888888776 6777777776665444443333
No 53
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=24.96 E-value=2.2e+02 Score=23.85 Aligned_cols=92 Identities=15% Similarity=0.217 Sum_probs=46.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhc----HHHHHHhhC---CCCCchhhhhHHHHHHHHhhcccCCccchhHHhhhcHhHHH
Q 019167 59 GDGEVEPNADQVLQLATEVCKED----VLILLVHKL---PILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLD 131 (345)
Q Consensus 59 g~~e~ep~~e~~~qL~~ei~~~d----ll~~Li~~l---~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~ 131 (345)
.+++..|.+....+|++..|+++ .+..|...| +.=.+-..-.+.++...|++.-.. -+++++..+-++|.
T Consensus 13 ~~d~~gp~~~~l~eIa~~t~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~---~~~~~~~~~~~~I~ 89 (125)
T PF01417_consen 13 SNDPWGPPGKLLAEIAQLTYNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSE---RFVDELRDHIDIIR 89 (125)
T ss_dssp SSSSSS--HHHHHHHHHHTTSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-H---HHHHHHHHTHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHhccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHh
Confidence 34455788889999999888843 344444444 333333333344444555543221 24566666666666
Q ss_pred HHHhcccCcc-hhhhhhHHHHHHh
Q 019167 132 FLVVCYDNKE-VALHCGIMLRECI 154 (345)
Q Consensus 132 ~Ll~gY~~~d-ial~~G~mLReci 154 (345)
.|.. |..+| -.-..|.-+|+-.
T Consensus 90 ~l~~-f~~~d~~g~d~~~~VR~~A 112 (125)
T PF01417_consen 90 ELQD-FQYVDPKGKDQGQNVREKA 112 (125)
T ss_dssp GGGG----BBTTSTBHHHHHHHHH
T ss_pred hcce-eeccCCCCccHHHHHHHHH
Confidence 6633 33222 2334555577654
No 54
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=24.14 E-value=4.2e+02 Score=30.15 Aligned_cols=100 Identities=15% Similarity=0.168 Sum_probs=64.2
Q ss_pred hhhHHHHHHhhhhHHHHHHhc--chhHHHhhhhccCCCchhhhhhHHHHHHhhhcChhhHHHHHHhhHHHHHHHHHhhhc
Q 019167 145 HCGIMLRECIKFPSLARYILE--SASFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLT 222 (345)
Q Consensus 145 ~~G~mLRecik~e~la~~iL~--~~~f~~fF~y~~~~~FeiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~~n~LL~ 222 (345)
.||++.-+.++.++.....=. ...+.-+-+...-.+|=+-+-|.+.+..++....+.+.. -.+|...--.-++
T Consensus 322 icaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~-----r~ev~~lv~r~lq 396 (1128)
T COG5098 322 ICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGR-----RHEVIRLVGRRLQ 396 (1128)
T ss_pred HHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccch-----HHHHHHHHHHHhh
Confidence 466666666666533221100 012333445567888888999999999998866555442 2345555556677
Q ss_pred CCCceehhhhhhhhHHHhcCCCCHHHHH
Q 019167 223 SSNYVTRRQSLKLLSEFLLEPPNSHIMK 250 (345)
Q Consensus 223 s~NYVTkRQSLKLLgelLldr~N~~vM~ 250 (345)
...-|.||.|+||++-+|+. +=|.+|-
T Consensus 397 Drss~VRrnaikl~SkLL~~-HPF~~~h 423 (1128)
T COG5098 397 DRSSVVRRNAIKLCSKLLMR-HPFASEH 423 (1128)
T ss_pred hhhHHHHHHHHHHHHHHHhc-CChhhhc
Confidence 77889999999999999985 4455553
No 55
>PF12552 DUF3741: Protein of unknown function (DUF3741); InterPro: IPR022212 This domain family is found in eukaryotes, and is approximately 50 amino acids in length.
Probab=23.78 E-value=77 Score=23.12 Aligned_cols=19 Identities=26% Similarity=0.525 Sum_probs=16.7
Q ss_pred HHHHHHHHhHHHHHHHHhc
Q 019167 293 EVKVILAKNHEKLLELLRN 311 (345)
Q Consensus 293 ~I~~IL~~Nr~kLl~fl~~ 311 (345)
+..+||.-||+-+++||.+
T Consensus 25 DaLeiL~sNkdlflk~Lqd 43 (46)
T PF12552_consen 25 DALEILSSNKDLFLKFLQD 43 (46)
T ss_pred HHHHHHHhCHHHHHHHHhC
Confidence 4678999999999999975
No 56
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.77 E-value=5.3e+02 Score=27.78 Aligned_cols=118 Identities=14% Similarity=0.178 Sum_probs=68.9
Q ss_pred HHHHHhhcHHHHHHhhCCCCCchhhhhHHHHHHHHhhcccCCccchhHHhhhcHhHHHHHHhccc--Ccch---------
Q 019167 74 ATEVCKEDVLILLVHKLPILGWEARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYD--NKEV--------- 142 (345)
Q Consensus 74 ~~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~Ll~gY~--~~di--------- 142 (345)
++.+...++++.|+..|..=||..||.++=..+|+.- ++..--+.||++.. ++.-|+.-.. +.++
T Consensus 357 iqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts---~g~~~qi~yLv~~g-iI~plcdlL~~~D~~ii~v~Ld~l~ 432 (514)
T KOG0166|consen 357 IQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTS---SGTPEQIKYLVEQG-IIKPLCDLLTCPDVKIILVALDGLE 432 (514)
T ss_pred HHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcc---cCCHHHHHHHHHcC-CchhhhhcccCCChHHHHHHHHHHH
Confidence 3577888999999999999999999999988888653 22223456666543 3333333222 2222
Q ss_pred -hhhhhHHHHHHhhhhHHHHHHhcchhHHHhhhhccCCCchhhhhhHHHHHHhhh
Q 019167 143 -ALHCGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLLT 196 (345)
Q Consensus 143 -al~~G~mLRecik~e~la~~iL~~~~f~~fF~y~~~~~FeiasDAf~Tfkellt 196 (345)
.+-.|.+..+-=. +.++.+|=+.+.+.++-..-...|=||..-|++.....+.
T Consensus 433 nil~~~e~~~~~~~-n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~ 486 (514)
T KOG0166|consen 433 NILKVGEAEKNRGT-NPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFS 486 (514)
T ss_pred HHHHHHHHhccccc-cHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 2222333222111 4555555555666665555455555666666655544443
No 57
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=23.74 E-value=7.4e+02 Score=24.75 Aligned_cols=146 Identities=12% Similarity=0.216 Sum_probs=80.5
Q ss_pred hhhhHHHHHHHHhhcccCCccchhHHhhhcHhHHHHHHhccc--Ccc-hhhhhhHHHHHHhhhhHHHHHHhc-----chh
Q 019167 97 ARKDLVHCWSILLKQKVDSTYCCVQFIENHFELLDFLVVCYD--NKE-VALHCGIMLRECIKFPSLARYILE-----SAS 168 (345)
Q Consensus 97 ~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~Ll~gY~--~~d-ial~~G~mLRecik~e~la~~iL~-----~~~ 168 (345)
+|+|....+..+..+-..+..+--.-|+++-.++.-+++-|+ +++ ..+.-|.++.- +.+.|-. ...
T Consensus 111 t~~Dli~FL~~~i~~~~~~k~~~Y~~LVk~N~~Vv~aL~L~~~~~~~~~Ii~d~evisl------LL~sMv~~~~~~l~a 184 (292)
T PF13929_consen 111 TKEDLISFLKLVIINLSSNKSFNYWDLVKRNKIVVEALKLYDGLNPDESIIFDEEVISL------LLKSMVIDENTKLNA 184 (292)
T ss_pred cHHHHHHHHHHHHhccccccchHHHHHHHhhHHHHHHHHHhhccCcccceeeChHHHHH------HHHHHHhccccchhh
Confidence 788888888887776665544333345555555666666677 564 23333333321 1122222 235
Q ss_pred HHHhhhhccCCCchhhhhhHHHHHHhhhcChhhHHHHHHhhHHHHHHHHHhhhcCCCceehhhhhhhhHHHhcCCCCHHH
Q 019167 169 FELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHI 248 (345)
Q Consensus 169 f~~fF~y~~~~~FeiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~~n~LL~s~NYVTkRQSLKLLgelLldr~N~~v 248 (345)
++.+.+|+. .+|+ .+..-.+...++. +-++ .++|+++|+-..+.+....|-.---==...=+++.+--...+
T Consensus 185 lYEvV~~l~-~t~~-~~l~~~vi~~Il~----~L~~--~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~ 256 (292)
T PF13929_consen 185 LYEVVDFLV-STFS-KSLTRNVIISILE----ILAE--SRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEV 256 (292)
T ss_pred HHHHHHHHH-hccc-cCCChhHHHHHHH----HHHh--cccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHH
Confidence 888888876 4444 2222222222221 1111 378999999888877775555433333334445556666777
Q ss_pred HHHHhcch
Q 019167 249 MKRYILEV 256 (345)
Q Consensus 249 M~~Yi~~~ 256 (345)
|.+-|++.
T Consensus 257 ~~kiI~~G 264 (292)
T PF13929_consen 257 MRKIIDDG 264 (292)
T ss_pred HHHHhhCC
Confidence 77777665
No 58
>PF14771 DUF4476: Domain of unknown function (DUF4476)
Probab=23.08 E-value=1.9e+02 Score=23.08 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=13.7
Q ss_pred hhHHHhhhhccCCCchhhhhhHHHHHHhhhc
Q 019167 167 ASFELFFKFVELPTFDVASDAFSTFKDLLTK 197 (345)
Q Consensus 167 ~~f~~fF~y~~~~~FeiasDAf~Tfkellt~ 197 (345)
..|..|.+-+....|| +|-...++.+..+
T Consensus 8 ~~f~~~~~~lk~~~fd--~dkl~~l~~~~~~ 36 (95)
T PF14771_consen 8 NDFEQFLEQLKKESFD--SDKLKVLEAAAKT 36 (95)
T ss_pred HHHHHHHHHHHcCCCc--HHHHHHHHHHHhc
Confidence 3455555555444444 4444444444443
No 59
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=22.92 E-value=1.8e+02 Score=32.01 Aligned_cols=73 Identities=23% Similarity=0.392 Sum_probs=56.9
Q ss_pred hHHHhhhhccCCCchhhhhhHHHHHHhhhcCh------hhHHHHHHh---------------hHHHHHHHHHhhhcCCCc
Q 019167 168 SFELFFKFVELPTFDVASDAFSTFKDLLTKHL------TVVSEYLTA---------------HYDEFFDLYEKLLTSSNY 226 (345)
Q Consensus 168 ~f~~fF~y~~~~~FeiasDAf~Tfkellt~Hk------~lvaefl~~---------------Nyd~Ff~~~n~LL~s~NY 226 (345)
.+..+|.+++.+.=.+.-|+-+-++++|+.-+ .+|-.|+.. |--.||...|..+..+.
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t~s~~~~~il~~~~~P~~K~~~~~l~~~~~~~~- 83 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLSTNSQRALEILVGVQEPHDKHLFDKLNDYFVKPS- 83 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCcHHHHHHHHhcCCccHHHHHHHHHHHHcCch-
Confidence 56788888999999999999999999998764 234444442 23569999999888775
Q ss_pred eehhhhhhhhHHHhcC
Q 019167 227 VTRRQSLKLLSEFLLE 242 (345)
Q Consensus 227 VTkRQSLKLLgelLld 242 (345)
+|-++|-|||.++--
T Consensus 84 -~Rl~~L~Ll~~~v~~ 98 (668)
T PF04388_consen 84 -YRLQALTLLGHFVRS 98 (668)
T ss_pred -hHHHHHHHHHHHHhc
Confidence 689999999999863
No 60
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=22.90 E-value=8e+02 Score=24.81 Aligned_cols=139 Identities=19% Similarity=0.276 Sum_probs=90.2
Q ss_pred hHHHhhhhc-cCCCchhhhhhHHHHHHhhhcChhhHHHHHHhhHHHHHHHHHhhhcCCCceehhhhhhhhHHHhcCCCCH
Q 019167 168 SFELFFKFV-ELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNS 246 (345)
Q Consensus 168 ~f~~fF~y~-~~~~FeiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~~n~LL~s~NYVTkRQSLKLLgelLldr~N~ 246 (345)
.+..+.+|+ ..+..++..++..++..+-.++ ...++|+++.+-+++..++..+...++--+.+++.+-...
T Consensus 340 Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~--------~~~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~ 411 (526)
T PF01602_consen 340 ILDELLKYLSELSDPDFRRELIKAIGDLAEKF--------PPDAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPEL 411 (526)
T ss_dssp HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH--------GSSHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHHhccchhhhhhHHHHHHHHHhcc--------CchHHHHHHHHHHhhhhccccccchHHHHHHHHhhcChhh
Confidence 466788888 6668888888888887775444 6678888888888888765555888888888887654432
Q ss_pred -----HHHHHH---hcchhhHHHHHHHhcCCcccchh--hhhhhhhhhhcCCCCChH-HHHHHHH-------------hH
Q 019167 247 -----HIMKRY---ILEVRFLKVMMTLLKDSSKNIQI--SAFHIFKVFVANPNKPHE-VKVILAK-------------NH 302 (345)
Q Consensus 247 -----~vM~~Y---i~~~~NLkliM~LL~d~sk~Iq~--EAFhvFKvFVANP~K~~~-I~~IL~~-------------Nr 302 (345)
..+.++ +.+++-++.+..++.+=+..+-- -+-.++..++.++...++ |+.-+.. .+
T Consensus 412 ~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~~ 491 (526)
T PF01602_consen 412 REKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEVQ 491 (526)
T ss_dssp HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhhH
Confidence 222222 56667777777777765555433 577778888877665444 3322221 13
Q ss_pred HHHHHHHhccCC
Q 019167 303 EKLLELLRNLSV 314 (345)
Q Consensus 303 ~kLl~fl~~f~~ 314 (345)
+.++.++.++..
T Consensus 492 ~~i~~~~~~~~~ 503 (526)
T PF01602_consen 492 NEILQFLLSLAT 503 (526)
T ss_dssp HHHHHHHHCHHH
T ss_pred HHHHHHHHHHhc
Confidence 466666666666
No 61
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=21.49 E-value=7.3e+02 Score=23.84 Aligned_cols=81 Identities=21% Similarity=0.400 Sum_probs=54.6
Q ss_pred CCceehhhhhhhhHHHhcCCCCHHHHHHHhcchhhHHHHHHHhcCCcccchhhhhhhhhhhhcCCCCChHHHHHHHHhHH
Q 019167 224 SNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFHIFKVFVANPNKPHEVKVILAKNHE 303 (345)
Q Consensus 224 ~NYVTkRQSLKLLgelLldr~N~~vM~~Yi~~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFVANP~K~~~I~~IL~~Nr~ 303 (345)
-|.-.+..+|++|+.+=....+-.+|.+||++ ++.||...+..+| +|+.|+.+-=-.+|.-..++|.. .
T Consensus 107 lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~------ll~LL~~G~~~~k---~~vLk~L~nLS~np~~~~~Ll~~--q 175 (254)
T PF04826_consen 107 LNSEVQLAGLRLLTNLTVTNDYHHMLANYIPD------LLSLLSSGSEKTK---VQVLKVLVNLSENPDMTRELLSA--Q 175 (254)
T ss_pred CCCHHHHHHHHHHHccCCCcchhhhHHhhHHH------HHHHHHcCChHHH---HHHHHHHHHhccCHHHHHHHHhc--c
Confidence 37778899999999999888888999888764 4678888899888 45566555333333334444433 2
Q ss_pred HHHHHHhccCCC
Q 019167 304 KLLELLRNLSVG 315 (345)
Q Consensus 304 kLl~fl~~f~~d 315 (345)
-+-.|+.=|+.+
T Consensus 176 ~~~~~~~Lf~~~ 187 (254)
T PF04826_consen 176 VLSSFLSLFNSS 187 (254)
T ss_pred chhHHHHHHccC
Confidence 344555445443
No 62
>PF04690 YABBY: YABBY protein; InterPro: IPR006780 YABBY proteins are a group of plant-specific transcription factors involved in the specification of abaxial polarity in lateral organs such as leaves and floral organs [, ].
Probab=21.21 E-value=93 Score=28.61 Aligned_cols=49 Identities=14% Similarity=0.196 Sum_probs=39.1
Q ss_pred CCCCChHHHHHHHHHHHHhccccchhhHHHhHHHHHHHHHHHHHhhhhhcC
Q 019167 9 SRPKTPLEVVKATKVSLMALDIKTVVEVKALEKAMEEIEKNFVTMRCMLSG 59 (345)
Q Consensus 9 k~~k~P~e~Vr~~~e~l~~l~~~~~~~~~~~~k~~ee~~K~l~~mk~il~g 59 (345)
|++|.|+-+=+.++|.+.++....+ +=.-+.+....+|+|...-+|=+|
T Consensus 121 KRqR~psaYn~f~k~ei~rik~~~p--~ishkeaFs~aAknW~h~phihfg 169 (170)
T PF04690_consen 121 KRQRVPSAYNRFMKEEIQRIKAENP--DISHKEAFSAAAKNWAHFPHIHFG 169 (170)
T ss_pred ccCCCchhHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHhhhhCcccccC
Confidence 4689999999999999999986543 223367788999999988877666
No 63
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=21.01 E-value=1.1e+03 Score=26.47 Aligned_cols=180 Identities=20% Similarity=0.243 Sum_probs=0.0
Q ss_pred chhHHhhhcHhHHHHHHhccc--CcchhhhhhHHHHHHhhhhHHHHHHhcchhHHHhhhhccCCCchhhhhhHHHHHHhh
Q 019167 118 CCVQFIENHFELLDFLVVCYD--NKEVALHCGIMLRECIKFPSLARYILESASFELFFKFVELPTFDVASDAFSTFKDLL 195 (345)
Q Consensus 118 p~v~Yl~~~peil~~Ll~gY~--~~dial~~G~mLRecik~e~la~~iL~~~~f~~fF~y~~~~~FeiasDAf~Tfkell 195 (345)
+.++--..+.+++..|++.-+ +.++-+.+...|+...-+..--..|..+..+.++.+.+..++-++---|...+-- |
T Consensus 280 ~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~N-L 358 (708)
T PF05804_consen 280 PRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFN-L 358 (708)
T ss_pred hHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHH-h
Q ss_pred hcChhhHHHHHHhhHHHHHHHHHhhhcCCCceehhhhhhhhHHHhcCCCCHHHHHHHhcchhhHHHHHHHhcCCcccchh
Q 019167 196 TKHLTVVSEYLTAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQI 275 (345)
Q Consensus 196 t~Hk~lvaefl~~Nyd~Ff~~~n~LL~s~NYVTkRQSLKLLgelLldr~N~~vM~~Yi~~~~NLkliM~LL~d~sk~Iq~ 275 (345)
+-++.+.+..++.+ ++...-.||.+++ .+.-++++|..+=.|..+.. |-.|-.....| |-.++..+...++.
T Consensus 359 Sfd~~~R~~mV~~G---lIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~-~f~~TdcIp~L--~~~Ll~~~~~~v~~ 430 (708)
T PF05804_consen 359 SFDPELRSQMVSLG---LIPKLVELLKDPN--FREVALKILYNLSMDDEARS-MFAYTDCIPQL--MQMLLENSEEEVQL 430 (708)
T ss_pred CcCHHHHHHHHHCC---CcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHH-HHhhcchHHHH--HHHHHhCCCccccH
Q ss_pred hhhhhhhhhhcCCCCChHHHH---------HHHHhHHHHH
Q 019167 276 SAFHIFKVFVANPNKPHEVKV---------ILAKNHEKLL 306 (345)
Q Consensus 276 EAFhvFKvFVANP~K~~~I~~---------IL~~Nr~kLl 306 (345)
|+-.+.--...||+..+.+.+ ...++|+.|+
T Consensus 431 eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lL 470 (708)
T PF05804_consen 431 ELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLL 470 (708)
T ss_pred HHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHH
No 64
>COG4836 Predicted membrane protein [Function unknown]
Probab=20.46 E-value=77 Score=25.42 Aligned_cols=47 Identities=21% Similarity=0.308 Sum_probs=37.1
Q ss_pred HhhHHHHHHHHHhhhcCCCceehhhhhhhhHHHhcCCCCHHHHHHHhcchhhHHH
Q 019167 207 TAHYDEFFDLYEKLLTSSNYVTRRQSLKLLSEFLLEPPNSHIMKRYILEVRFLKV 261 (345)
Q Consensus 207 ~~Nyd~Ff~~~n~LL~s~NYVTkRQSLKLLgelLldr~N~~vM~~Yi~~~~NLkl 261 (345)
+-|||.|++ .+|||+.+-+=.+-.+.+.-+=.++...|.+...-|+.
T Consensus 28 si~~d~fiK--------k~~~tQa~llmI~vtI~lg~~vsnFfldyL~~S~ql~y 74 (77)
T COG4836 28 SINYDKFIK--------KGKVTQARLLMIFVTIALGYAVSNFFLDYLAYSKQLIY 74 (77)
T ss_pred HhhHHHHhh--------cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 369999995 59999999888888888777777777788877666654
No 65
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=20.12 E-value=5.2e+02 Score=29.97 Aligned_cols=187 Identities=16% Similarity=0.210 Sum_probs=120.2
Q ss_pred HHHHHHhhCCCCCchhhhhHHHHHHHHhhcc------cCCccchhHHhhh-cHhHHHHHHhcccCc--chhhhhhHHHHH
Q 019167 82 VLILLVHKLPILGWEARKDLVHCWSILLKQK------VDSTYCCVQFIEN-HFELLDFLVVCYDNK--EVALHCGIMLRE 152 (345)
Q Consensus 82 ll~~Li~~l~~L~fE~RKdv~~If~~llr~~------~~~~~p~v~Yl~~-~peil~~Ll~gY~~~--dial~~G~mLRe 152 (345)
+...|+.+|.. -|+-+-++..|+.+.... .|-..|.+-|=.+ --+|..+|+++|+.. .+--+|-.+|--
T Consensus 816 ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~Lsh 893 (1030)
T KOG1967|consen 816 IAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSH 893 (1030)
T ss_pred HHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHH
Confidence 44556666655 345555666665544332 2333333334444 478999999999832 222233333433
Q ss_pred HhhhhHHHHHHhcc-h-hHHHhhhhccCCCchhhhhhHHHHHHhhhcChhhHHHHHHhhHHHHHHHHHhhhcCCCc---e
Q 019167 153 CIKFPSLARYILES-A-SFELFFKFVELPTFDVASDAFSTFKDLLTKHLTVVSEYLTAHYDEFFDLYEKLLTSSNY---V 227 (345)
Q Consensus 153 cik~e~la~~iL~~-~-~f~~fF~y~~~~~FeiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~~n~LL~s~NY---V 227 (345)
-+.+=+. ..++-. + .+--+.+-+..|.=++-.-+..|++.+++.|..+..++++ -++...-.|=.+.+| |
T Consensus 894 Vl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~----Tlvp~lLsls~~~~n~~~~ 968 (1030)
T KOG1967|consen 894 VLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS----TLVPYLLSLSSDNDNNMMV 968 (1030)
T ss_pred HHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh----HHHHHHHhcCCCCCcchhH
Confidence 3333222 112211 1 2233445667899999899999999999999999888665 466655666666675 7
Q ss_pred ehhhhhhhhHHHhc-CCCCHHHHHHHhcchhhHHHHHHHhcCCcccchhhhhh
Q 019167 228 TRRQSLKLLSEFLL-EPPNSHIMKRYILEVRFLKVMMTLLKDSSKNIQISAFH 279 (345)
Q Consensus 228 TkRQSLKLLgelLl-dr~N~~vM~~Yi~~~~NLkliM~LL~d~sk~Iq~EAFh 279 (345)
.|--||+.|+-|.. -|+++= |---|+=++-+-.-|.||.+-|+-||-.
T Consensus 969 VR~~ALqcL~aL~~~~P~~~l----~~fr~~Vl~al~k~LdDkKRlVR~eAv~ 1017 (1030)
T KOG1967|consen 969 VREDALQCLNALTRRLPTKSL----LSFRPLVLRALIKILDDKKRLVRKEAVD 1017 (1030)
T ss_pred HHHHHHHHHHHHhccCCCccc----ccccHHHHHHhhhccCcHHHHHHHHHHH
Confidence 78899999999987 555432 3345777888999999999999999864
Done!