Query 019168
Match_columns 345
No_of_seqs 174 out of 1408
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 07:15:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019168.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019168hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06714 S-adenosylhomocystein 100.0 4.6E-45 1E-49 332.1 27.1 229 55-340 2-232 (236)
2 TIGR01704 MTA/SAH-Nsdase 5'-me 100.0 1.2E-44 2.5E-49 329.0 26.9 226 56-336 1-228 (228)
3 PRK14697 bifunctional 5'-methy 100.0 1.9E-43 4.1E-48 321.7 27.8 230 55-341 2-232 (233)
4 PRK05584 5'-methylthioadenosin 100.0 3.6E-41 7.7E-46 306.6 28.1 227 55-336 1-229 (230)
5 PRK06698 bifunctional 5'-methy 100.0 3.5E-41 7.7E-46 335.7 27.5 229 55-340 2-231 (459)
6 PRK07164 5'-methylthioadenosin 100.0 1.7E-39 3.6E-44 291.8 24.1 211 55-336 4-218 (218)
7 COG0775 Pfs Nucleoside phospho 100.0 4.6E-39 9.9E-44 292.3 23.5 230 55-337 3-234 (234)
8 TIGR03664 fut_nucase futalosin 100.0 6.3E-37 1.4E-41 276.9 21.5 208 57-318 1-208 (222)
9 PLN02584 5'-methylthioadenosin 100.0 3.5E-35 7.5E-40 269.2 24.8 225 52-339 6-244 (249)
10 PRK08236 hypothetical protein; 100.0 1.5E-34 3.3E-39 258.8 22.6 204 55-329 2-208 (212)
11 TIGR01705 MTA/SAH-nuc-hyp 5'-m 100.0 8.5E-34 1.8E-38 251.1 20.6 194 53-339 9-208 (212)
12 PRK06026 5'-methylthioadenosin 100.0 1.7E-33 3.7E-38 249.7 19.6 192 53-338 9-207 (212)
13 PRK13374 purine nucleoside pho 100.0 9.1E-33 2E-37 251.3 24.5 197 54-309 13-210 (233)
14 PF01048 PNP_UDP_1: Phosphoryl 100.0 8.8E-33 1.9E-37 251.4 23.2 227 56-334 1-234 (234)
15 PRK05819 deoD purine nucleosid 100.0 1.3E-31 2.9E-36 244.2 26.0 222 53-334 11-233 (235)
16 TIGR00107 deoD purine-nucleosi 100.0 3.2E-31 6.8E-36 241.2 25.0 224 53-336 8-232 (232)
17 PRK11178 uridine phosphorylase 100.0 1.1E-31 2.4E-36 246.6 21.9 218 55-334 17-248 (251)
18 TIGR01718 Uridine-psphlse urid 100.0 9.9E-30 2.2E-34 233.2 21.3 221 53-335 10-243 (245)
19 PRK07115 AMP nucleosidase; Pro 100.0 2.7E-28 5.8E-33 224.1 23.2 218 53-336 22-244 (258)
20 TIGR01719 euk_UDPppase uridine 100.0 1.1E-27 2.5E-32 223.6 23.2 228 56-336 32-284 (287)
21 PRK05634 nucleosidase; Provisi 100.0 3.4E-28 7.3E-33 213.6 18.0 177 55-331 4-183 (185)
22 PRK08666 5'-methylthioadenosin 100.0 7.7E-28 1.7E-32 222.7 21.0 229 55-337 2-245 (261)
23 TIGR01700 PNPH purine nucleosi 100.0 1.2E-27 2.6E-32 219.6 20.7 197 90-336 41-247 (249)
24 TIGR01697 PNPH-PUNA-XAPA inosi 100.0 2.1E-27 4.6E-32 218.1 22.1 197 90-336 41-246 (248)
25 TIGR03468 HpnG hopanoid-associ 100.0 1.7E-27 3.6E-32 213.9 16.4 166 101-335 21-188 (212)
26 PRK08202 purine nucleoside pho 99.9 1.3E-25 2.8E-30 208.7 23.9 234 53-335 20-267 (272)
27 PRK08292 AMP nucleosidase; Pro 99.9 4.5E-26 9.7E-31 221.7 19.9 199 88-336 263-468 (489)
28 TIGR01721 AMN-like AMP nucleos 99.9 6.2E-25 1.3E-29 201.6 23.2 218 53-336 21-245 (266)
29 TIGR01694 MTAP 5'-deoxy-5'-met 99.9 2.4E-25 5.3E-30 203.8 20.0 192 90-335 33-237 (241)
30 COG2820 Udp Uridine phosphoryl 99.9 3.4E-25 7.4E-30 195.5 19.9 207 39-309 4-222 (248)
31 PRK07077 hypothetical protein; 99.9 8.2E-25 1.8E-29 198.1 21.1 162 54-307 9-170 (238)
32 TIGR01717 AMP-nucleosdse AMP n 99.9 1.9E-24 4.2E-29 209.8 21.0 198 87-336 250-456 (477)
33 COG0813 DeoD Purine-nucleoside 99.9 2E-23 4.4E-28 181.6 19.7 224 52-334 11-234 (236)
34 TIGR01699 XAPA xanthosine phos 99.9 7.7E-23 1.7E-27 186.6 18.4 196 90-335 41-245 (248)
35 PRK09136 5'-methylthioadenosin 99.9 3.7E-21 8.1E-26 175.7 22.2 223 57-335 2-240 (245)
36 PRK08564 5'-methylthioadenosin 99.4 2.6E-11 5.6E-16 112.3 20.8 232 52-337 5-251 (267)
37 PRK08931 5'-methylthioadenosin 99.4 2.8E-11 6.1E-16 112.7 20.0 232 54-338 3-249 (289)
38 TIGR01698 PUNP purine nucleoti 99.4 2.4E-10 5.2E-15 103.7 22.3 186 91-335 42-234 (237)
39 PRK07432 5'-methylthioadenosin 99.3 1.9E-10 4.1E-15 107.1 21.1 236 54-343 3-257 (290)
40 PF06516 NUP: Purine nucleosid 99.3 1.5E-10 3.2E-15 108.1 18.6 260 54-336 2-302 (314)
41 PRK07823 5'-methylthioadenosin 99.3 1.3E-09 2.9E-14 100.4 22.3 227 53-338 4-244 (264)
42 COG0005 Pnp Purine nucleoside 99.0 2.8E-08 6E-13 90.7 18.9 231 53-334 15-260 (262)
43 KOG3984 Purine nucleoside phos 98.9 9.2E-08 2E-12 84.8 16.5 236 53-336 23-280 (286)
44 KOG3985 Methylthioadenosine ph 98.8 6.3E-07 1.4E-11 79.0 16.8 241 54-342 9-264 (283)
45 KOG3728 Uridine phosphorylase 98.4 1.6E-05 3.5E-10 70.6 15.2 224 55-336 52-305 (308)
46 COG5042 NUP Purine nucleoside 98.1 4.1E-05 8.8E-10 69.8 11.2 260 54-336 37-335 (349)
47 COG2039 Pcp Pyrrolidone-carbox 63.7 17 0.00037 32.0 5.3 45 97-141 31-75 (207)
48 PF01470 Peptidase_C15: Pyrogl 52.7 40 0.00087 29.9 6.0 43 98-140 32-74 (202)
49 PRK13195 pyrrolidone-carboxyla 51.3 27 0.00059 31.6 4.7 27 114-140 49-75 (222)
50 PRK13196 pyrrolidone-carboxyla 49.6 34 0.00074 30.6 5.1 42 99-140 34-75 (211)
51 COG2910 Putative NADH-flavin r 44.4 1.4E+02 0.003 26.5 7.7 44 97-140 60-110 (211)
52 PRK13194 pyrrolidone-carboxyla 41.1 58 0.0013 29.1 5.2 42 99-140 33-74 (208)
53 PRK13193 pyrrolidone-carboxyla 39.6 63 0.0014 28.9 5.2 42 99-140 33-74 (209)
54 COG1927 Mtd Coenzyme F420-depe 39.5 61 0.0013 29.0 4.9 41 100-140 32-74 (277)
55 PRK00994 F420-dependent methyl 35.3 86 0.0019 28.7 5.2 54 101-154 33-97 (277)
56 COG0799 Uncharacterized homolo 32.9 95 0.0021 25.1 4.7 51 101-151 35-88 (115)
57 TIGR00504 pyro_pdase pyrogluta 31.0 1E+02 0.0022 27.6 5.1 41 100-140 32-72 (212)
58 PRK13197 pyrrolidone-carboxyla 27.3 1.2E+02 0.0027 27.1 5.0 42 99-140 34-75 (215)
59 TIGR00853 pts-lac PTS system, 23.3 1.3E+02 0.0028 23.1 3.9 58 100-157 4-62 (95)
60 cd00501 Peptidase_C15 Pyroglut 23.2 1.8E+02 0.004 25.3 5.3 27 114-140 48-74 (194)
61 PF12641 Flavodoxin_3: Flavodo 22.9 1.1E+02 0.0023 26.1 3.6 44 97-140 37-80 (160)
62 PF02302 PTS_IIB: PTS system, 22.6 90 0.002 23.1 2.8 54 103-156 4-58 (90)
63 cd05566 PTS_IIB_galactitol PTS 21.3 3.1E+02 0.0068 20.1 5.6 54 102-155 3-58 (89)
64 TIGR01957 nuoB_fam NADH-quinon 20.0 2.1E+02 0.0046 24.0 4.7 42 95-137 53-95 (145)
No 1
>PRK06714 S-adenosylhomocysteine nucleosidase; Validated
Probab=100.00 E-value=4.6e-45 Score=332.14 Aligned_cols=229 Identities=18% Similarity=0.237 Sum_probs=195.4
Q ss_pred CEEEEEecCcHHHHHHHHhhhcccCCCCcccccCCcEEEEEEECCEEEEEEeCCCChhHHHHHHHHHHHhcCCcEEEEEe
Q 019168 55 PYIGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVHYG 134 (345)
Q Consensus 55 ~~I~Ii~Al~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~G~i~g~~Vvv~~~G~G~v~Aa~~~~~li~~f~~~~ii~~G 134 (345)
++||||+|| ++|++++.+.+...+ .....+++||.|+++|++|+++.||+|++|||++++.|+++|+|+.||++|
T Consensus 2 ~~IgIi~Am-~~E~~~l~~~l~~~~----~~~~~~~~~~~g~~~~~~vv~~~sGiGkvnAA~~~~~li~~f~~~~IIn~G 76 (236)
T PRK06714 2 KRIAIVAAW-EPELTYLHQSYPSER----IEKRAAWEFHFHTINDLEIISVITGVGKVSCASCVQLLISEFQPDELFMTG 76 (236)
T ss_pred CeEEEEeeC-HHHHHHHHHhccccc----eEEEcCeEEEEEEECCEEEEEEeCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 579999999 999999988876544 567889999999999999999999999999999999999999999999999
Q ss_pred eecccCCCCccccEEEeccceeeCCccccccccc-CCCCCccCccCCCCCcchhhhhcccccCCcccccCCCCCCccccc
Q 019168 135 TAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSE-TGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWL 213 (345)
Q Consensus 135 iaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~-~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p~~~~~~~ 213 (345)
+|||+++++++|||||++++++||. +.+.+++. .++ |. +.+ . .+
T Consensus 77 ~aG~l~~~l~iGDvVi~~~~~~~D~-~~~~~~~~~~~~-----------------------~~-------~~~---~-~~ 121 (236)
T PRK06714 77 ICGSLSNKVKNGHIVVALNAIQHDV-TAAGSGEDVFNL-----------------------YN-------GRT---A-PI 121 (236)
T ss_pred cccCCCCCCCCCCEEEECeeeeccC-ccccCCcccccc-----------------------cC-------Ccc---c-cc
Confidence 9999999999999999999999995 33333221 000 00 001 1 36
Q ss_pred CCChHHHHHHHhhhhhhhccccCCCCCCCCCCeEEEEeeeeehhhhccCHHHHHHHHHHcCceEEecchhHHHHHHHhCC
Q 019168 214 PVDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQFNVSTVDEESAAIVMACLSNA 293 (345)
Q Consensus 214 ~~d~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~v~~G~ig~Sgd~~~~~~~~~~~L~~~~~~~~vdMEsaava~va~~~~ 293 (345)
+.++.|.+.+.+.. ...+++.|.+ +|||.|+.+++.+++|.++++++++|||+||+|++|+.++
T Consensus 122 ~~~~~l~~~~~~~~---------------~~~~~~~G~i-~SgD~Fv~~~~~~~~l~~~~~a~~vdME~aAvA~vc~~~~ 185 (236)
T PRK06714 122 ETTKSLVRRIKKIR---------------SYDPIHFGTF-LSGDQRIRSSEMRYLLHTVYGALAVDQEVAAFAYVCQINK 185 (236)
T ss_pred cCCHHHHHHHHHHh---------------ccCCeEEeEE-EecCeecCCHHHHHHHHHHCCCeEEEehHHHHHHHHHHhC
Confidence 77888887766541 0235899999 8999999999999999999999999999999999999999
Q ss_pred CCEEEEEeeccCCCCCCCccchhhH-HHHHHHHHHHHHHHHHhcccCC
Q 019168 294 VPSIVFRGVSDLGGGSDRLLSISRI-SLASINALRVAAEFIALIDKNN 340 (345)
Q Consensus 294 ip~l~IR~ISD~a~~~~~~~~~~~~-~~Aa~~aa~~~~~~l~~l~~~~ 340 (345)
+||++||+|||.++++ ...+|++| ..|++++++++..||+.+-.+-
T Consensus 186 vP~l~IR~ISD~a~~~-~~~~~~~f~~~aa~~sa~~~~~~l~~~~~~~ 232 (236)
T PRK06714 186 KPFLCLKAASDQANDK-TKEEQKIFKMLACERACEHLIAFLRVYEINV 232 (236)
T ss_pred CCEEEEEEeccCCCCc-cccCHHHHHHHHHHHHHHHHHHHHHHhHhhh
Confidence 9999999999999987 77889999 9999999999999999985543
No 2
>TIGR01704 MTA/SAH-Nsdase 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase. There are homologs of this enzyme in plants, some of which score between trusted and noise cutoffs here, but there is no experimental evidence to validate this function at this time.
Probab=100.00 E-value=1.2e-44 Score=328.98 Aligned_cols=226 Identities=23% Similarity=0.357 Sum_probs=197.9
Q ss_pred EEEEEecCcHHHHHHHHhhhcccCCCCcccccCCcEEEEEEECCEEEEEEeCCCChhHHHHHHHHHHHhcCCcEEEEEee
Q 019168 56 YIGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVHYGT 135 (345)
Q Consensus 56 ~I~Ii~Al~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~G~i~g~~Vvv~~~G~G~v~Aa~~~~~li~~f~~~~ii~~Gi 135 (345)
+|+||+|| ++|++++.+.+...+ .....+++||.|+++|++|+++.+|||++|||++++.++++|+|+.||++|+
T Consensus 1 ~i~ii~Am-~~E~~~l~~~l~~~~----~~~~~~~~~~~g~~~g~~v~i~~sGiG~vnAA~~~~~li~~~~p~~II~~G~ 75 (228)
T TIGR01704 1 KIGIIGAM-EEEVTLLRDKIENRQ----TISLGGCEIYTGQLNGTEVALLKSGIGKVAAALGATLLLEHCKPDVIINTGS 75 (228)
T ss_pred CEEEEecC-HHHHHHHHHHhhcCc----eEEECCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHhCCCCEEEEEee
Confidence 39999999 999999998887655 4667889999999999999999999999999999999999999999999999
Q ss_pred ecccCCCCccccEEEeccceeeCCcccccccccCCCCCccCccCCCCCcchhhhhcccccCCcccccCCCCCCcccccCC
Q 019168 136 AGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWLPV 215 (345)
Q Consensus 136 aGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p~~~~~~~~~ 215 (345)
|||+++++++|||||++++++||. +.+.|++..|+.|.. | . +|.+
T Consensus 76 aG~l~~~l~~GDvvi~~~~~~~d~-~~~~~~~~~g~~~~~------------------------------~---~-~~~~ 120 (228)
T TIGR01704 76 AGGLAPTLKVGDIVVSDEARYHDA-DVTAFGYEYGQLPGC------------------------------P---A-GFKA 120 (228)
T ss_pred ccCCCCCCccCCEEEEEEEEEccC-cccccCCcCCcCCCC------------------------------C---c-eeeC
Confidence 999999999999999999999985 555555555554321 1 1 3678
Q ss_pred ChHHHHHHHhhhhhhhccccCCCCCCCCCCeEEEEeeeeehhhhccCHHHHHHHHHHc-CceEEecchhHHHHHHHhCCC
Q 019168 216 DSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQF-NVSTVDEESAAIVMACLSNAV 294 (345)
Q Consensus 216 d~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~v~~G~ig~Sgd~~~~~~~~~~~L~~~~-~~~~vdMEsaava~va~~~~i 294 (345)
|++|.+.+.+..+ ..+++++.|.+ +|||.|+.++++++++.++| +++++|||++|++++|+.+++
T Consensus 121 d~~L~~~~~~~~~-------------~~~~~~~~G~i-~T~d~f~~~~~~~~~l~~~~~~~~~vdME~aAva~va~~~~i 186 (228)
T TIGR01704 121 DDKLIAAAEACIA-------------ELNLNAVRGLI-VSGDAFINGSVGLAKIRHNFPQAIAVEMEATAIAHVCHNFNV 186 (228)
T ss_pred CHHHHHHHHHHHH-------------hcCCCeEEEEE-EEcChhcCCHHHHHHHHHHCCcccEecccHHHHHHHHHHhCC
Confidence 9999887776521 01357899999 89999999999999999999 899999999999999999999
Q ss_pred CEEEEEeeccCCCCCCCccchhhH-HHHHHHHHHHHHHHHHhc
Q 019168 295 PSIVFRGVSDLGGGSDRLLSISRI-SLASINALRVAAEFIALI 336 (345)
Q Consensus 295 p~l~IR~ISD~a~~~~~~~~~~~~-~~Aa~~aa~~~~~~l~~l 336 (345)
||++||+|||.++++ +..+|++| ..|+.++++++..+|+.+
T Consensus 187 p~~~iR~ISD~a~~~-~~~~~~~~~~~aa~~~~~~~~~~~~~~ 228 (228)
T TIGR01704 187 PFVVVRAISDVADQQ-SHLSFDEFLAVAAKQSSLMVESLVQKL 228 (228)
T ss_pred CEEEEEEecccCCCc-cccCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999988 66789999 999999999999999864
No 3
>PRK14697 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Provisional
Probab=100.00 E-value=1.9e-43 Score=321.72 Aligned_cols=230 Identities=22% Similarity=0.326 Sum_probs=196.9
Q ss_pred CEEEEEecCcHHHHHHHHhhhcccCCCCcccccCCcEEEEEEECCEEEEEEeCCCChhHHHHHHHHHHHhcCCcEEEEEe
Q 019168 55 PYIGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVHYG 134 (345)
Q Consensus 55 ~~I~Ii~Al~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~G~i~g~~Vvv~~~G~G~v~Aa~~~~~li~~f~~~~ii~~G 134 (345)
.+||||+|| ++|++++.+.|...+ ....++++||.|+++|++|+++.||||++|||++++.|+++|+|+.||++|
T Consensus 2 ~~i~Ii~Am-~~E~~~l~~~l~~~~----~~~~~~~~~~~G~~~g~~v~v~~sGiG~vnAA~~~~~li~~f~~~~II~~G 76 (233)
T PRK14697 2 NRIGIIGAM-QIEIDLLLEKLVVQE----EQIIAGMPFYVGEFMGTEVIVTRCGVGKVNAAACTQTLIHKFDVDAIINTG 76 (233)
T ss_pred ceEEEEecC-HHHHHHHHHHhhccc----eEEECCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 479999999 999999999987654 456889999999999999999999999999999999999999999999999
Q ss_pred eecccCCCCccccEEEeccceeeCCcccccccccCCCCCccCccCCCCCcchhhhhcccccCCcccccCCCCCCcccccC
Q 019168 135 TAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWLP 214 (345)
Q Consensus 135 iaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p~~~~~~~~ 214 (345)
+|||+++++++|||||++++++||. +.+.++ +.. |... .|+
T Consensus 77 ~AG~l~~~l~iGDvVi~~~~~~~D~-~~~~~~---~~~---------------------------------p~~~--~~~ 117 (233)
T PRK14697 77 VAGGLHPDVKVGDIVISTNVTHHDV-SKTQMK---NLF---------------------------------PFQE--EFI 117 (233)
T ss_pred cccCCCCCCCcCCEEEECeeEEcCC-Chhhhc---ccC---------------------------------CCCc--ccC
Confidence 9999999999999999999999985 111100 000 1111 156
Q ss_pred CChHHHHHHHhhhhhhhccccCCCCCCCCCCeEEEEeeeeehhhhccCHHHHHHHHHHcCceEEecchhHHHHHHHhCCC
Q 019168 215 VDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQFNVSTVDEESAAIVMACLSNAV 294 (345)
Q Consensus 215 ~d~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~v~~G~ig~Sgd~~~~~~~~~~~L~~~~~~~~vdMEsaava~va~~~~i 294 (345)
+|.+|++.+.+.... . ..+++++.|.+ +|||.|+.+++.+++|.+.++++++|||+||++++|+.+++
T Consensus 118 ~~~~l~~~~~~~~~~--~---------~~~~~~~~G~i-~SgD~fi~~~~~~~~l~~~~~~~~vdME~aAva~v~~~~~v 185 (233)
T PRK14697 118 ASKELVELARKACNS--S---------SLHIEIHEGRI-VSGECFVEDSKLKAKLIDEYAPHCTEMEGAAIGHVAYINEV 185 (233)
T ss_pred CCHHHHHHHHHHhhh--c---------cCCccEEEeEE-EEcCeecCCHHHHHHHHHhcCCeEEEehHHHHHHHHHHcCC
Confidence 788888877664210 0 01467999999 89999999999999999999999999999999999999999
Q ss_pred CEEEEEeeccCCCCCCCccchhhH-HHHHHHHHHHHHHHHHhcccCCC
Q 019168 295 PSIVFRGVSDLGGGSDRLLSISRI-SLASINALRVAAEFIALIDKNNL 341 (345)
Q Consensus 295 p~l~IR~ISD~a~~~~~~~~~~~~-~~Aa~~aa~~~~~~l~~l~~~~~ 341 (345)
||++||+|||.++++ ...+|++| ..|++++++++..+|+.+.++.+
T Consensus 186 pfl~iR~ISD~a~~~-~~~~~~~~~~~aa~~~~~~~~~~l~~~~~~~~ 232 (233)
T PRK14697 186 PFLVIRCISDSADDE-AQISYDDFAKTAANYCSEIIVEMLKNISSKTV 232 (233)
T ss_pred CEEEEEEeccCCCCC-CcCCHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999999999999988 77889999 99999999999999999987654
No 4
>PRK05584 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=100.00 E-value=3.6e-41 Score=306.57 Aligned_cols=227 Identities=26% Similarity=0.385 Sum_probs=196.5
Q ss_pred CEEEEEecCcHHHHHHHHhhhcccCCCCcccccCCcEEEEEEECCEEEEEEeCCCChhHHHHHHHHHHHhcCCcEEEEEe
Q 019168 55 PYIGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVHYG 134 (345)
Q Consensus 55 ~~I~Ii~Al~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~G~i~g~~Vvv~~~G~G~v~Aa~~~~~li~~f~~~~ii~~G 134 (345)
++|+|++|| ++|++++.+.+...+ .....++.||.|+++|++|+++.+|||++|||.+++.++..|+++.||++|
T Consensus 1 ~~i~ii~A~-~~E~~~l~~~~~~~~----~~~~~~~~~~~g~~~g~~v~v~~tG~G~~~aa~~~~~li~~~~~~~ii~~G 75 (230)
T PRK05584 1 MKIGIIGAM-EEEVTLLLDKLENAQ----TITLAGREFYTGTLHGHEVVLVLSGIGKVAAALTATILIEHFKVDAVINTG 75 (230)
T ss_pred CeEEEEccC-HHHHHHHHHHhhccc----eEecCCcEEEEEEECCEEEEEEECCcCHHHHHHHHHHHHHhcCCCEEEEEE
Confidence 369999999 999999988877554 356788999999999999999999999999999999999999999999999
Q ss_pred eecccCCCCccccEEEeccceeeCCcccccccccCCCCCccCccCCCCCcchhhhhcccccCCcccccCCCCCCcccccC
Q 019168 135 TAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWLP 214 (345)
Q Consensus 135 iaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p~~~~~~~~ 214 (345)
+|||+++++++|||||+++++++|. +.+.+|+..|+.|. .+. +++
T Consensus 76 ~aG~l~~~~~~GDvvi~~~~~~~d~-~~~~~~~~~~~~~~---------------------------------~~~-~~~ 120 (230)
T PRK05584 76 VAGGLAPGLKVGDVVVADELVQHDV-DVTAFGYPYGQVPG---------------------------------LPA-AFK 120 (230)
T ss_pred ecCCCCCCCccCCEEEECeEEEecc-CccccCCcCCccCC---------------------------------CCc-cee
Confidence 9999999999999999999999985 33334443333221 111 367
Q ss_pred CChHHHHHHHhhhhhhhccccCCCCCCCCCCeEEEEeeeeehhhhccCHHHHHHHHHHc-CceEEecchhHHHHHHHhCC
Q 019168 215 VDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQF-NVSTVDEESAAIVMACLSNA 293 (345)
Q Consensus 215 ~d~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~v~~G~ig~Sgd~~~~~~~~~~~L~~~~-~~~~vdMEsaava~va~~~~ 293 (345)
+|+.|.+.+.++.+ ..+++++.|.+ +|||.|+.+++++++|++++ +++++|||++|++++|+.++
T Consensus 121 ~d~~L~~~~~~~~~-------------~~~~~~~~G~~-~s~d~f~~~~~~~~~l~~~~~~~~~veME~aa~a~va~~~~ 186 (230)
T PRK05584 121 ADEKLVALAEKAAK-------------ELNLNVHRGLI-ASGDQFIAGAEKVAAIRAEFPDALAVEMEGAAIAQVCHEFG 186 (230)
T ss_pred CCHHHHHHHHHHHH-------------hcCCcEEEEEE-EEcchhcCCHHHHHHHHHhCCCCeEEechHHHHHHHHHHcC
Confidence 89999888776521 12468899999 89999999999999999999 99999999999999999999
Q ss_pred CCEEEEEeeccCCCCCCCccchhhH-HHHHHHHHHHHHHHHHhc
Q 019168 294 VPSIVFRGVSDLGGGSDRLLSISRI-SLASINALRVAAEFIALI 336 (345)
Q Consensus 294 ip~l~IR~ISD~a~~~~~~~~~~~~-~~Aa~~aa~~~~~~l~~l 336 (345)
+||++||+|||.++++ ++.+|+++ ..|++++++++..||+.+
T Consensus 187 vp~~~ir~vSd~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~ 229 (230)
T PRK05584 187 VPFVVVRAISDTADDE-AHVSFDEFLAVAAKYSANILKRMLEKL 229 (230)
T ss_pred CCEEEEEEeccCCCCc-ccccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999988 77789999 999999999999999876
No 5
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=100.00 E-value=3.5e-41 Score=335.67 Aligned_cols=229 Identities=21% Similarity=0.324 Sum_probs=198.0
Q ss_pred CEEEEEecCcHHHHHHHHhhhcccCCCCcccccCCcEEEEEEECCEEEEEEeCCCChhHHHHHHHHHHHhcCCcEEEEEe
Q 019168 55 PYIGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVHYG 134 (345)
Q Consensus 55 ~~I~Ii~Al~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~G~i~g~~Vvv~~~G~G~v~Aa~~~~~li~~f~~~~ii~~G 134 (345)
++||||+|| ++|++++.+.+...+ ....++++||.|+++|++|+++.||||++|||++++.|+.+|+|+.||++|
T Consensus 2 ~~i~ii~Am-~~E~~~~~~~l~~~~----~~~~~~~~~~~G~~~g~~v~v~~sGiG~v~AA~~~~~li~~~~~~~ii~~G 76 (459)
T PRK06698 2 NRIGIIGAM-QIEIDLLLEKLIMQE----EQIIAGMPFYVGEFMGTEVIVTRCGVGKVNAAACTQTLIHKFDVDAIINTG 76 (459)
T ss_pred CeEEEEeeC-HHHHHHHHHHhhccc----eEEECCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 589999999 999999998887655 467899999999999999999999999999999999999999999999999
Q ss_pred eecccCCCCccccEEEeccceeeCCcccccccccCCCCCccCccCCCCCcchhhhhcccccCCcccccCCCCCCcccccC
Q 019168 135 TAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWLP 214 (345)
Q Consensus 135 iaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p~~~~~~~~ 214 (345)
+|||+++++++|||||++.+++||. +.+.++ +.+ |... .++
T Consensus 77 ~aG~l~~~l~~gDvvi~~~~~~~d~-~~~~~~---~~~---------------------------------~~~~--~~~ 117 (459)
T PRK06698 77 VAGGLHPDVKVGDIVISTNVTHHDV-SKTQMK---NLF---------------------------------PFQE--EFI 117 (459)
T ss_pred cccCCCCCCcCCCEEEEceeEEccC-CccccC---CcC---------------------------------CCCC--CcC
Confidence 9999999999999999999999985 222111 000 1111 267
Q ss_pred CChHHHHHHHhhhhhhhccccCCCCCCCCCCeEEEEeeeeehhhhccCHHHHHHHHHHcCceEEecchhHHHHHHHhCCC
Q 019168 215 VDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQFNVSTVDEESAAIVMACLSNAV 294 (345)
Q Consensus 215 ~d~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~v~~G~ig~Sgd~~~~~~~~~~~L~~~~~~~~vdMEsaava~va~~~~i 294 (345)
+|..|++.+.+.... ...+++++.|.+ +|||.|+.+++.+++|.+.+++.|+|||+||+|++|+.+++
T Consensus 118 ~d~~l~~~~~~~~~~-----------~~~~~~~~~G~i-~sgd~f~~~~~~~~~l~~~~~a~~veME~aava~va~~~~v 185 (459)
T PRK06698 118 ASKELVELARKACNS-----------SSLHMEIHEGRI-VSGECFVEDSKLKAKLIDEYAPHCTEMEGAAIGHVAYINEV 185 (459)
T ss_pred CCHHHHHHHHHHHHh-----------ccCCccEEEeeE-EecCeecCCHHHHHHHHHHcCCcEEehhhHHHHHHHHHcCC
Confidence 788998887665210 011357999999 89999999999999999999999999999999999999999
Q ss_pred CEEEEEeeccCCCCCCCccchhhH-HHHHHHHHHHHHHHHHhcccCC
Q 019168 295 PSIVFRGVSDLGGGSDRLLSISRI-SLASINALRVAAEFIALIDKNN 340 (345)
Q Consensus 295 p~l~IR~ISD~a~~~~~~~~~~~~-~~Aa~~aa~~~~~~l~~l~~~~ 340 (345)
||++||+|||.++++ ...+|++| ..|+.++++++.++|+.+++..
T Consensus 186 p~~~iR~iSD~a~~~-~~~~~~~~~~~a~~~~~~~v~~~l~~~~~~~ 231 (459)
T PRK06698 186 PFLVIRCISDSADDE-AQISYDDFAKTAANYCSEIIVEMLKTISSKT 231 (459)
T ss_pred CEEEEEEeccCCCCC-CccCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999988 78889999 9999999999999999997654
No 6
>PRK07164 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Provisional
Probab=100.00 E-value=1.7e-39 Score=291.79 Aligned_cols=211 Identities=19% Similarity=0.279 Sum_probs=173.1
Q ss_pred CEEEEEecCcHHHHHHHHhh-hcccCCCCcccccCCcEEEEEEECCEEEEEEeCCCChhHHHHHHHHHHHhcCCcEEEEE
Q 019168 55 PYIGLVMAYPPEESALITSR-LFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVHY 133 (345)
Q Consensus 55 ~~I~Ii~Al~~~E~~~l~~~-l~~~~~~~~~~~~~~~~~~~G~i~g~~Vvv~~~G~G~v~Aa~~~~~li~~f~~~~ii~~ 133 (345)
++||||+|| ++|++.+.+. +...+ .....++.||.|+++|++|+++.||+|++|||.+++.|+.+|+|+.+|++
T Consensus 4 ~~I~ii~Am-~~E~~~l~~~~~~~~~----~~~~~~~~~y~~~~~g~~v~~~~sGiGkv~aa~~~~~lI~~~~~~~iI~~ 78 (218)
T PRK07164 4 KIIAIIYAD-NNEFVNLENFEFILLK----NIESFQKKIAIFRYKNYNILYINTGIGLINAALATQKLIEKYQIEIIINY 78 (218)
T ss_pred cEEEEEeeC-HHHHHHHHHhhhhcce----eEEecCceEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 479999999 9999999876 44333 35677899999999999999999999999999999999999999999999
Q ss_pred eeecccCCCCccccEEEeccceeeCCcccccccccCCCCCccCccCCCCCcchhhhhcccccCCcccccCCCCCCccccc
Q 019168 134 GTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWL 213 (345)
Q Consensus 134 GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p~~~~~~~ 213 (345)
|+|||+ +++++|||||++++++||. . +.+ ++.|++|.. +. ++
T Consensus 79 G~aG~l-~~~~~gdvvi~~~~~~~D~-~-~~~-~~~g~~p~~---------------------------------~~-~~ 120 (218)
T PRK07164 79 GAVGSN-INIDLGQVVYPEKFYLLDA-I-TPW-YPPGQTPGE---------------------------------KE-FY 120 (218)
T ss_pred EcccCc-CCCCCCCEEEEeeeEEccc-C-CcC-CCcccCCCC---------------------------------cc-cc
Confidence 999999 9999999999999999996 1 221 333443211 11 13
Q ss_pred CCChHHHHHHHhhhhhhhccccCCCCCCCCCCeEEEEeeeeehhhhccCHHHHHHHHHHc-CceEEecchhHHHHHHHhC
Q 019168 214 PVDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQF-NVSTVDEESAAIVMACLSN 292 (345)
Q Consensus 214 ~~d~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~v~~G~ig~Sgd~~~~~~~~~~~L~~~~-~~~~vdMEsaava~va~~~ 292 (345)
+.+. + . ..++.|.+ +|||.|+.+++.++++ +++ +++++|||+||+|++|+.+
T Consensus 121 ~~~~-~-----~-------------------~~~~~~~i-~SgD~Fi~~~~~~~~l-~~~~~a~~vDME~aAiaqv~~~~ 173 (218)
T PRK07164 121 ENNK-I-----N-------------------KNFNKIHL-GSSNSFIFDLDKLKII-KDFIFVSFFDMEAFALAQVCFKN 173 (218)
T ss_pred cchh-h-----h-------------------cCCcEEEE-EeCCccCCCHHHHHHH-HhcCCCcEEEchHHHHHHHHHHc
Confidence 3321 1 0 02345678 6999999999988899 677 9999999999999999999
Q ss_pred CCCEEEEEeeccCCCCCCCcc-chhhH-HHHHHHHHHHHHHHHHhc
Q 019168 293 AVPSIVFRGVSDLGGGSDRLL-SISRI-SLASINALRVAAEFIALI 336 (345)
Q Consensus 293 ~ip~l~IR~ISD~a~~~~~~~-~~~~~-~~Aa~~aa~~~~~~l~~l 336 (345)
++||++||.|||.++++ ... +++++ ..|++++++++..||+.+
T Consensus 174 ~vpf~~ir~ISD~~~~~-~~~~~~~~~~~~a~~~~~~~v~~~l~~~ 218 (218)
T PRK07164 174 KVKFYCIKYVSDFIENN-SDIEIVNNNIKKGSKKALEFIFELLENI 218 (218)
T ss_pred CCCEEEEEEEccCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999755 332 46688 999999999999999864
No 7
>COG0775 Pfs Nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.6e-39 Score=292.28 Aligned_cols=230 Identities=29% Similarity=0.436 Sum_probs=200.6
Q ss_pred CEEEEEecCcHHHHHHHHhhhcccCCCCcccccCCcEEEEEEECCEEEEEEeCCCChhHHHHHHHHHHHhcCCcEEEEEe
Q 019168 55 PYIGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVHYG 134 (345)
Q Consensus 55 ~~I~Ii~Al~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~G~i~g~~Vvv~~~G~G~v~Aa~~~~~li~~f~~~~ii~~G 134 (345)
++++|++|+ ++|...+.+.+.+.. .....+..|++|.+.+++|+++.+|+|+++||.+++.++..|+|+.||++|
T Consensus 3 ~~i~Ii~a~-~~e~~~l~~~~~~~~----~~~~~~~~~~~g~~~~~~vvl~~sgIG~v~aA~~t~~~i~~~~p~~iI~~G 77 (234)
T COG0775 3 MKIGIIGAM-EEEVELLLELLGDAE----EIAIAGTKFYTGQMAGKEVVLVLSGIGKVNAALTTTLLLAKFSPDAVINTG 77 (234)
T ss_pred eEeehHHhh-HHHHHHHHhhccCce----EEEecceEEEEEEEcCeEEEEEEeCcCHHHHHHHHHHHHHhcCCCEEEEee
Confidence 679999999 999999988764433 455666899999999999999999999999999999999999999999999
Q ss_pred eecccCCCCccccEEEeccceeeCCcccccccccCCCCCccCccCCCCCcchhhhhcccccCCcccccCCCCCCcccccC
Q 019168 135 TAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWLP 214 (345)
Q Consensus 135 iaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p~~~~~~~~ 214 (345)
+|||+.++.++|||||++.+.+||. +.+.||++.|++|. +.| .+|.
T Consensus 78 ~aGgl~~~~~iGDvvvs~~~~~~D~-d~~~~~~~~g~~p~-----------------------------~~~----a~~~ 123 (234)
T COG0775 78 SAGGLVSSLAIGDVVVSDALSYHDV-DLTAFGYEIGQIPT-----------------------------GEP----ALFE 123 (234)
T ss_pred eccCcCCCCccccEEEEhhHhhhhc-ccccccccCCCCCC-----------------------------ccc----hhcc
Confidence 9999999999999999999999997 88888877777651 012 2477
Q ss_pred CChHHHHHHHhhhhhhhccccCCCCCCCCCCeEEEEeeeeehhhhccCHHHHHHHHHHc-CceEEecchhHHHHHHHhCC
Q 019168 215 VDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQF-NVSTVDEESAAIVMACLSNA 293 (345)
Q Consensus 215 ~d~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~v~~G~ig~Sgd~~~~~~~~~~~L~~~~-~~~~vdMEsaava~va~~~~ 293 (345)
+++.+++.+.+..+. .+.+++.|++ +|||+|+.+.+...++++.+ ++.++|||+||+|++|+.++
T Consensus 124 ~~~~~~~~~~~~~~~-------------~~~~~~~Gli-~tgd~fv~~~~~~~~~~~~~~~a~aveME~aaia~v~~~~~ 189 (234)
T COG0775 124 ADEELLDLAGEVAGE-------------GKLRLRTGLI-VTGDRFVTLGEPVAKLRKAFPDALAVEMEGAAIAQVCYRFG 189 (234)
T ss_pred ccHHHHHHHHHHHHh-------------cCcceeEEEE-EcchhhhhcchhHHHHHHHCCCcEEEEecHHHHHHHHHHhC
Confidence 888888877765211 2468999999 89999999998888899988 99999999999999999999
Q ss_pred CCEEEEEeeccCCCCCCCccchhhH-HHHHHHHHHHHHHHHHhcc
Q 019168 294 VPSIVFRGVSDLGGGSDRLLSISRI-SLASINALRVAAEFIALID 337 (345)
Q Consensus 294 ip~l~IR~ISD~a~~~~~~~~~~~~-~~Aa~~aa~~~~~~l~~l~ 337 (345)
+||++||+|||.+++++.+.+|++| ..|+++++.+++++++.|.
T Consensus 190 vP~~~ir~ISD~a~~~~~~~~~~~f~~~aa~~s~~~~~~~~~~l~ 234 (234)
T COG0775 190 VPFLVLRAISDIADGGADPVSFDEFLAEAAKQSALVLLSALEKLG 234 (234)
T ss_pred CCEEEEEEeccCCCCcCCcccHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999998333789999 9999999999999998863
No 8
>TIGR03664 fut_nucase futalosine nucleosidase. This enzyme catalyzes the conversion of futalosine to de-hypoxanthine futalosine in a pathway for the biosynthesis of menaquinone distinct from the pathway observed in E. coli.
Probab=100.00 E-value=6.3e-37 Score=276.88 Aligned_cols=208 Identities=24% Similarity=0.205 Sum_probs=166.9
Q ss_pred EEEEecCcHHHHHHHHhhhcccCCCCcccccCCcEEEEEEECCEEEEEEeCCCChhHHHHHHHHHHHhcCCcEEEEEeee
Q 019168 57 IGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVHYGTA 136 (345)
Q Consensus 57 I~Ii~Al~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~G~i~g~~Vvv~~~G~G~v~Aa~~~~~li~~f~~~~ii~~Gia 136 (345)
|+||+|| ++|.+++.+.+... +.|+++|++|+++.+|||++|||++++.++..|+|+.+|++|+|
T Consensus 1 ~~Ii~A~-~~E~~~~~~~~~~~--------------~~G~~~g~~v~v~~tGiG~v~aA~~~~~~i~~~~~~~ii~~G~a 65 (222)
T TIGR03664 1 ILIVTAV-TAEASALLRGLGGR--------------YAGSVGGAGFDVLVTGVGPVNAAAATARLLARAPYELVINAGIA 65 (222)
T ss_pred CEEEEeC-HHHHHHHHHhcCCC--------------cceeeCCeeEEEEECCcCHHHHHHHHHHHHHhCCCCEEEEEEEc
Confidence 6899999 99999998776521 78999999999999999999999999999999999999999999
Q ss_pred cccCCCCccccEEEeccceeeCCcccccccccCCCCCccCccCCCCCcchhhhhcccccCCcccccCCCCCCcccccCCC
Q 019168 137 GSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWLPVD 216 (345)
Q Consensus 137 Ggl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p~~~~~~~~~d 216 (345)
||+++++++|||||+++++++|.+.++++++.+.+ .+..|. . ++.+......++.|
T Consensus 66 G~l~~~~~~GDvvv~~~~~~~d~g~~~~~~~~p~~-------~~~~~~---------------~--~~~~~~~~~~~~~d 121 (222)
T TIGR03664 66 GGFPGSAAVGDLVVADSEIAADLGAETPEGFLPLE-------ALGFPQ---------------L--PGGGSSYFNRIPLD 121 (222)
T ss_pred ccCCCCCCCcCEEEeeeEEEcccCccCCCCccccc-------cCCCCc---------------C--CCCCccccccccCC
Confidence 99999999999999999999996444444432211 000000 0 00000000015678
Q ss_pred hHHHHHHHhhhhhhhccccCCCCCCCCCCeEEEEeeeeehhhhccCHHHHHHHHHHcCceEEecchhHHHHHHHhCCCCE
Q 019168 217 SEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQFNVSTVDEESAAIVMACLSNAVPS 296 (345)
Q Consensus 217 ~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~v~~G~ig~Sgd~~~~~~~~~~~L~~~~~~~~vdMEsaava~va~~~~ip~ 296 (345)
+.|.+.+.+..+ ..+++++.|.+ +|+|.|+.+.+.++++.++++++++|||+||++++|+.+++||
T Consensus 122 ~~L~~~~~~~~~-------------~~~~~~~~G~i-~T~d~~~~~~~~~~~l~~~~~a~aveMEsaava~va~~~~vP~ 187 (222)
T TIGR03664 122 PDLVERAVQLLR-------------ALGLPVARGPF-LTVSTVSGTAARAEALARRFGAVAENMEGFAVALAALRYGVPF 187 (222)
T ss_pred HHHHHHHHHHhh-------------ccCcceeEeee-eeecceeCCHHHHHHHHHhcchHHHHhhHHHHHHHHHHhCCCE
Confidence 999887766421 12468999999 8999999999988999999999999999999999999999999
Q ss_pred EEEEeeccCCCCCCCccchhhH
Q 019168 297 IVFRGVSDLGGGSDRLLSISRI 318 (345)
Q Consensus 297 l~IR~ISD~a~~~~~~~~~~~~ 318 (345)
++||+|||.+++. .+++|+.+
T Consensus 188 ~~IR~ISD~~~~~-~~~~w~~~ 208 (222)
T TIGR03664 188 LELRGISNLVGPR-DRSRWRIK 208 (222)
T ss_pred EEEEeeccCCCCc-chhhcChH
Confidence 9999999999988 66677765
No 9
>PLN02584 5'-methylthioadenosine nucleosidase
Probab=100.00 E-value=3.5e-35 Score=269.23 Aligned_cols=225 Identities=19% Similarity=0.186 Sum_probs=172.7
Q ss_pred CCCCEEEEEecCcHHHHHHHHhhhcccCCCC-cccccCCcEEEEEEECCEEEEEEeCC---------CChhHHHHHHHHH
Q 019168 52 IGGPYIGLVMAYPPEESALITSRLFVHNSRI-PFIDLAGRRFNVGKIKNVDVIYVMTG---------EQTVNSGITVQIL 121 (345)
Q Consensus 52 ~~~~~I~Ii~Al~~~E~~~l~~~l~~~~~~~-~~~~~~~~~~~~G~i~g~~Vvv~~~G---------~G~v~Aa~~~~~l 121 (345)
+.+++|+||+|| ++|.+++.+.+...+... +.....++.+|.|+++|++|+++.+| +|++|||++++.+
T Consensus 6 ~~~~~I~Ii~Am-~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~~G~~~g~~V~v~~sG~~~~~~i~~IGkvnAA~~~~~l 84 (249)
T PLN02584 6 RPISTVLIVIAM-QAEAMPLVNALGLVEDVDSPFPKGVPWVRYSGTHKGLRVHVVCPGKDKALGVDSVGTVPASLVTYAA 84 (249)
T ss_pred CCCceEEEEEEc-HHHHHHHHHHHhhhccccccccccCCeeEEEEEECCEEEEEEecCCccccccCccCHHHHHHHHHHH
Confidence 356799999999 999999999987665211 11135788999999999999999999 9999999999999
Q ss_pred HHhcCCcEEEEEeeecccCC-CCccccEEEeccceeeCCcccccccccCCCCCccCccCCCCCcchhhhhcccccCCccc
Q 019168 122 LDAFDIRGVVHYGTAGSSNN-SLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQL 200 (345)
Q Consensus 122 i~~f~~~~ii~~GiaGgl~~-~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~ 200 (345)
+.+|+|+.||++|+|||+++ ++++|||||++++++||. +.. ++ .|. .|..++.
T Consensus 85 i~~~~~~~II~~G~aG~l~~~~l~vGDvVia~~~~~~D~-~~~--------~~-----~~~------------~~~~g~~ 138 (249)
T PLN02584 85 IQALKPDLIINAGTAGGFKAKGAAIGDVFLATAVANHDR-RIP--------IP-----VFD------------KYGVGTR 138 (249)
T ss_pred HHhcCCCEEEEEecccCcCcCCCCcCCEEEECeeEeccc-CCC--------cc-----ccc------------ccccCcc
Confidence 99999999999999999985 899999999999999984 110 00 000 0111000
Q ss_pred ccCCCCCCcccccCCChHHHHHHHhhhhhhhccccCCCCCCCCCCeEEEEeeeeehhhhccCHHHHHHHHHHcCceEEec
Q 019168 201 YSAGKPMEELFWLPVDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQFNVSTVDE 280 (345)
Q Consensus 201 ~~~~~p~~~~~~~~~d~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~v~~G~ig~Sgd~~~~~~~~~~~L~~~~~~~~vdM 280 (345)
| .+ +++.+.. . ..++.|.+ +|||.|+.+.+..+.+ ++++++++||
T Consensus 139 -----~-----~~-~~~~l~~---~-------------------~~~~~G~i-~SgD~F~~~~~~~~~~-~~~~a~~vDM 183 (249)
T PLN02584 139 -----D-----AF-PTPNLIK---A-------------------LGLKEGVL-STGNSLDMTEQDEESI-KANDATVKDM 183 (249)
T ss_pred -----c-----cC-CCHHHHh---h-------------------CCCeEEEE-EEeCEEeCCHHHHHHH-HHcCCcEEec
Confidence 1 01 1233221 1 14588999 8999999887765544 5689999999
Q ss_pred chhHHHHHHHhCCCCEEEEEeeccCCCCCCCc--cchhhH-HHHHHHHHHHHHHHHHhcccC
Q 019168 281 ESAAIVMACLSNAVPSIVFRGVSDLGGGSDRL--LSISRI-SLASINALRVAAEFIALIDKN 339 (345)
Q Consensus 281 Esaava~va~~~~ip~l~IR~ISD~a~~~~~~--~~~~~~-~~Aa~~aa~~~~~~l~~l~~~ 339 (345)
|+||+|++|+.+++||++||+|||.++++ .. .+|... ..|+++..+.+..+++-++.+
T Consensus 184 E~aAia~va~~~gvp~~~IR~ISD~~~~~-~~~~~ef~~~~~~a~~~~~~~l~~~~~~~~~~ 244 (249)
T PLN02584 184 EGAAVAYVADLLKVPAIFVKAVTDIVDGD-KPTAEEFLENLSAAAAALQGAVPKVLDFISGK 244 (249)
T ss_pred hHHHHHHHHHHhCCCEEEEEEEeecCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999998765 32 223334 788888888888888887654
No 10
>PRK08236 hypothetical protein; Provisional
Probab=100.00 E-value=1.5e-34 Score=258.76 Aligned_cols=204 Identities=15% Similarity=0.038 Sum_probs=159.0
Q ss_pred CEEEEEecCcHHHHHHHHhhhcccCCCCcccccCCcEEEEEEECCEEEEEEeCCCChhHHHHHHHHHHHhc--CCcEEEE
Q 019168 55 PYIGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAF--DIRGVVH 132 (345)
Q Consensus 55 ~~I~Ii~Al~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~G~i~g~~Vvv~~~G~G~v~Aa~~~~~li~~f--~~~~ii~ 132 (345)
++|+|++|+ +.|.+.+.+.+.. ++.++++.||+|++|||++++.++.+| +|+.||+
T Consensus 2 ~~i~vv~A~-~~E~~~l~~~l~~---------------------~~~~~v~~sGiGkv~AA~~~~~li~~~~~~p~~vI~ 59 (212)
T PRK08236 2 KRVLVVTAV-PAERDAVLRGLGN---------------------DSRFDVLAAGVGPAAAAASTARALAAAAAPYDLVVS 59 (212)
T ss_pred ceEEEEEec-HHHHHHHHHhccC---------------------CCceEEEEcCcCHHHHHHHHHHHHHHhccCCCEEEE
Confidence 479999999 9999999765421 236889999999999999999999999 9999999
Q ss_pred EeeecccCCCCccccEEEeccceeeCCcccccccccCCCCCccCccCCCCCcchhhhhcccccCCcccccCCCCCCcccc
Q 019168 133 YGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFW 212 (345)
Q Consensus 133 ~GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p~~~~~~ 212 (345)
+|+|||+++++++|||||++++++||.+...+.|+.+++. ..| + ...
T Consensus 60 ~GvAGgl~~~l~vGDvVva~~~~~~D~g~~~~~g~~~~~~--------------------~~~----------~---~~~ 106 (212)
T PRK08236 60 AGIAGGFPGKAEVGSLVVADEIIAADLGAETPDGFLPVDE--------------------LGF----------G---TTT 106 (212)
T ss_pred EecccCCCCCCCCCCEEEEeeEEeccCCCCCccCcCcccc--------------------ccC----------C---cce
Confidence 9999999999999999999999999852211111111000 000 0 112
Q ss_pred cCCChHHHHHHHhhhhhhhccccCCCCCCCCCCeEEEEeeeeehhhhccCHHHHHHHHHHc-CceEEecchhHHHHHHHh
Q 019168 213 LPVDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQF-NVSTVDEESAAIVMACLS 291 (345)
Q Consensus 213 ~~~d~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~v~~G~ig~Sgd~~~~~~~~~~~L~~~~-~~~~vdMEsaava~va~~ 291 (345)
|++|+.|.+.+.+... ...++++.|++ +|||.|+.+++.+++|.++| ++.++|||++|++++|+.
T Consensus 107 ~~~d~~l~~~~~~~l~-------------~~~~~~~~G~i-~Tgd~~v~~~~~~~~l~~~~~~a~~vdMEgaAvA~vc~~ 172 (212)
T PRK08236 107 IQVDPALVRQLTEALL-------------AAALGATAGPV-LTVSTVTGTAETAAALAARHPDAVAEAMEGFGVAEAAAA 172 (212)
T ss_pred ecCCHHHHHHHHHHHH-------------hcCCCeEEeeE-EecCeEeCCHHHHHHHHHHCCCceeehhHHHHHHHHHHH
Confidence 6788888876655310 11357899999 89999999999999999999 899999999999999999
Q ss_pred CCCCEEEEEeeccCCCCCCCccchhhHHHHHHHHHHHH
Q 019168 292 NAVPSIVFRGVSDLGGGSDRLLSISRISLASINALRVA 329 (345)
Q Consensus 292 ~~ip~l~IR~ISD~a~~~~~~~~~~~~~~Aa~~aa~~~ 329 (345)
+++||++||+|||.++.. ...+|+- +.|.....+.+
T Consensus 173 ~~vPf~~iR~ISD~~~~r-d~~~W~~-~~A~~~l~~~~ 208 (212)
T PRK08236 173 AGLPVLELRAISNPVGPR-DRAAWRI-KEALAALTAAS 208 (212)
T ss_pred hCCCEEEEEEecCCCCcc-chhccCH-HHHHHHHHHHH
Confidence 999999999999999987 5445543 44544444443
No 11
>TIGR01705 MTA/SAH-nuc-hyp 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase, putative. This enzyme is involved in the recycling of the components of S-adenosylmethionine after it has donated one of its two non-ribose sulfur ligands to an acceptor. In the case of 5'-methylthioadenosine this represents the first step of the methionine salvage pathway in bacteria. This enzyme is widely distributed in bacteria.
Probab=100.00 E-value=8.5e-34 Score=251.09 Aligned_cols=194 Identities=22% Similarity=0.219 Sum_probs=156.4
Q ss_pred CCCEEEEEecCcHHHHHHHHhhhcccCCCCcccccCCcEEEEEEECCEEEEEEeCCCChhHHHHHHHHHHHhc-----CC
Q 019168 53 GGPYIGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAF-----DI 127 (345)
Q Consensus 53 ~~~~I~Ii~Al~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~G~i~g~~Vvv~~~G~G~v~Aa~~~~~li~~f-----~~ 127 (345)
....++|++|+ |+|...+.. . .+.++.||+||+|||++++.+|.+| +|
T Consensus 9 ~~~~~l~v~a~-~~e~~~~~~-----~---------------------~~~l~~sGIGKVNAA~~~~~lI~~f~~~~~~p 61 (212)
T TIGR01705 9 ADKDVLFVMAA-QAEYGPHLQ-----A---------------------LFAPLMTGVGPVEAAIRVGAELAGLDAADALP 61 (212)
T ss_pred cCccEEEEEee-HHHhhhccc-----C---------------------CeeEEEcCccHHHHHHHHHHHHHhhhhccCCC
Confidence 45679999998 888775421 1 2567889999999999999999985 89
Q ss_pred cEEEEEeeecccCCCCccccEEEeccceeeCCcccccccccCCCCCccCccCCCCCcchhhhhcccccCCcccccCCCCC
Q 019168 128 RGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPM 207 (345)
Q Consensus 128 ~~ii~~GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p~ 207 (345)
+.||++|+|||. ++++||||++++++|||. +.+.|||+.||+|..+
T Consensus 62 d~VIN~GvAG~~--~~~igDIVi~t~~~~hDv-d~t~~gy~~GqiP~~~------------------------------- 107 (212)
T TIGR01705 62 DLVVSLGSAGSR--TLEQTEIYQAVSVSYRDI-DASAFGFEKGATPFLD------------------------------- 107 (212)
T ss_pred CEEEEecccCCC--CCccCCEEEEeeEEEcCc-CccccCCccccCCCCC-------------------------------
Confidence 999999999995 578999999999999997 8888998888876421
Q ss_pred CcccccCCChHHHHHHHhhhhhhhccccCCCCCCCCCCeEEEEeeeeehhhhccCHHHHHHHHHHcCceEEecchhHHHH
Q 019168 208 EELFWLPVDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQFNVSTVDEESAAIVM 287 (345)
Q Consensus 208 ~~~~~~~~d~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~v~~G~ig~Sgd~~~~~~~~~~~L~~~~~~~~vdMEsaava~ 287 (345)
++++..+.+...+... ...++.|.+ +|||.| ++++++|+|||++|+++
T Consensus 108 -----~~~~~~l~~~~~~~~~---------------~~~~~~g~~-vSgd~f-----------~~~~a~~vdME~aAia~ 155 (212)
T TIGR01705 108 -----LPAEAALPFRIPDIAE---------------ARLSTGGAI-ISGAAY-----------DAIAADMVDMETFACLR 155 (212)
T ss_pred -----CCchhhHHHHHHHHHh---------------ccCcceeEE-EECcch-----------hhCCceEEechHHHHHH
Confidence 1334445444333210 112568888 899987 24689999999999999
Q ss_pred HHHhCCCCEEEEEeeccCCCCCCCccchhhH-HHHHHHHHHHHHHHHHhcccC
Q 019168 288 ACLSNAVPSIVFRGVSDLGGGSDRLLSISRI-SLASINALRVAAEFIALIDKN 339 (345)
Q Consensus 288 va~~~~ip~l~IR~ISD~a~~~~~~~~~~~~-~~Aa~~aa~~~~~~l~~l~~~ 339 (345)
+|+.+++||++||+|||.++++....+|++| ..|++++++++.++|+.+.+-
T Consensus 156 vc~~~~vpf~~iR~ISD~a~~~~~~~df~~f~~~aa~~sa~~v~~ll~~~~~~ 208 (212)
T TIGR01705 156 ACQLFDVPLIGLRGISDGAADLNHVDDWTAYLDIIDEKLADAVDRLCQAIEDG 208 (212)
T ss_pred HHHHcCCCEEEEEEEecCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999998766233469999 999999999999999998654
No 12
>PRK06026 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase; Validated
Probab=100.00 E-value=1.7e-33 Score=249.72 Aligned_cols=192 Identities=21% Similarity=0.252 Sum_probs=150.1
Q ss_pred CCCEEEEEecCcHHHHHHHHhhhcccCCCCcccccCCcEEEEEEECCEEEEEEeCCCChhHHHHHHHHHHHhcC-----C
Q 019168 53 GGPYIGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAFD-----I 127 (345)
Q Consensus 53 ~~~~I~Ii~Al~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~G~i~g~~Vvv~~~G~G~v~Aa~~~~~li~~f~-----~ 127 (345)
...+++|++|+ +.|...+. +..|+++.||+||+|||++++.+|.+|+ |
T Consensus 9 ~~~~~l~~~A~-~~E~~~~~--------------------------~~~v~l~~sGIGKVnAA~~t~~lI~~f~~~~~~p 61 (212)
T PRK06026 9 AGKRVLFVMAA-DAEYGPHL--------------------------RARFTPLMTGVGPVEAAVNLTAALARLKAAGDLP 61 (212)
T ss_pred CCccEEEEEec-HHHHhhcc--------------------------cCCeEEEEcCeeHHHHHHHHHHHHHHhhccCCCC
Confidence 35689999999 88887542 1258999999999999999999999998 9
Q ss_pred cEEEEEeeecccCCCCccccEEEeccceeeCCcccccccccCCCCCccCccCCCCCcchhhhhcccccCCcccccCCCCC
Q 019168 128 RGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPM 207 (345)
Q Consensus 128 ~~ii~~GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p~ 207 (345)
+.||++|+||| +++++|||||+++++|||. +.+.+|++.|++|..+
T Consensus 62 d~IIn~GvAGg--~~l~igDvViat~~~~hD~-d~~~~g~~~g~~p~~~------------------------------- 107 (212)
T PRK06026 62 DLVVSLGSAGS--AKLEQTEVYQVSSVSYRDM-DASPLGFEKGVTPFLD------------------------------- 107 (212)
T ss_pred CEEEEecccCC--CCCccCCEEEEeeEEEcCC-CCcccCCcccccCCCC-------------------------------
Confidence 99999999999 5799999999999999997 7778888777765311
Q ss_pred CcccccCCChHHHHHHHhhhhhhhccccCCCCCCCCCCeEEEEeeeeehhhhccCHHHHHHHHHHcCceEEecchhHHHH
Q 019168 208 EELFWLPVDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQFNVSTVDEESAAIVM 287 (345)
Q Consensus 208 ~~~~~~~~d~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~v~~G~ig~Sgd~~~~~~~~~~~L~~~~~~~~vdMEsaava~ 287 (345)
.+.+.+.+.++.+ . .....++-|.+ +|+|.| ++++++++|||+||+|+
T Consensus 108 --------~~~~~~l~~~~~~--~----------~~~~i~tgg~~-vsgd~f-----------~~~~a~~vdMEgaAvAq 155 (212)
T PRK06026 108 --------LPATVELPLRIPG--I----------PEASLSTGGNI-VSGAAY-----------DAIDADMVDMETYAVLR 155 (212)
T ss_pred --------CchhHHHHHHHhh--h----------hcccceecCEE-eeCchh-----------hhcCCeEEechHHHHHH
Confidence 1122222222210 0 00111334555 566643 35699999999999999
Q ss_pred HHHhCCCCEEEEEeeccCCCCCCCc-cchhhH-HHHHHHHHHHHHHHHHhccc
Q 019168 288 ACLSNAVPSIVFRGVSDLGGGSDRL-LSISRI-SLASINALRVAAEFIALIDK 338 (345)
Q Consensus 288 va~~~~ip~l~IR~ISD~a~~~~~~-~~~~~~-~~Aa~~aa~~~~~~l~~l~~ 338 (345)
+|+.+++||++||+|||.++++ .. .+|++| ..|++++++++.+++..+.+
T Consensus 156 Vc~~~~vPfl~iR~ISD~a~~~-a~~~df~~f~~~aa~~sa~~v~~~~~~~~~ 207 (212)
T PRK06026 156 ACQAFGVPLIGLRGISDGAAEL-KHVGDWTEYLHVIDEKLAGAVDRLERALED 207 (212)
T ss_pred HHHHcCCCEEEEEEEecCCCcc-cchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999876 44 469999 99999999999999987754
No 13
>PRK13374 purine nucleoside phosphorylase; Provisional
Probab=100.00 E-value=9.1e-33 Score=251.34 Aligned_cols=197 Identities=19% Similarity=0.153 Sum_probs=160.3
Q ss_pred CCEEEEEecCcHHHHHHHHh-hhcccCCCCcccccCCcEEEEEEECCEEEEEEeCCCChhHHHHHHHHHHHhcCCcEEEE
Q 019168 54 GPYIGLVMAYPPEESALITS-RLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVH 132 (345)
Q Consensus 54 ~~~I~Ii~Al~~~E~~~l~~-~l~~~~~~~~~~~~~~~~~~~G~i~g~~Vvv~~~G~G~v~Aa~~~~~li~~f~~~~ii~ 132 (345)
...+.|++. ||.+...+.+ .+++.+. .....++.||+|+++|++|+++.+|||++|||++++.|+..|+++.+|+
T Consensus 13 ~~~~vi~~G-dp~R~~~~a~~~~~~~~~---~~~~~~~~~~~G~~~g~~v~v~~~GiG~~~Aai~~~eLi~~~g~~~iI~ 88 (233)
T PRK13374 13 FAETVLMPG-DPLRAKYIAETYLEDVVQ---VTDVRNMFGFTGTYKGKKVSVMGHGMGIPSMVIYVHELIATFGVKNIIR 88 (233)
T ss_pred cCCeEEecC-CHHHHHHHHHHHhcCcee---eecccceEEEEEEECCEEEEEEeCCCCHhHHHHHHHHHHHHcCCcEEEE
Confidence 567889998 6999999975 5555442 4567889999999999999999999999999999999999999999999
Q ss_pred EeeecccCCCCccccEEEeccceeeCCcccccccccCCCCCccCccCCCCCcchhhhhcccccCCcccccCCCCCCcccc
Q 019168 133 YGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFW 212 (345)
Q Consensus 133 ~GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p~~~~~~ 212 (345)
+|+|||+++++++|||||++.++ +|. .+. +.+ +. |. .+.
T Consensus 89 ~GtaG~l~~~l~~GDvVI~~~a~-~d~--~~~------~~~---------------------~~---------~~--~~~ 127 (233)
T PRK13374 89 VGSCGATQDDVKLMDVIIAQGAS-TDS--KTN------RIR---------------------FS---------GH--DFA 127 (233)
T ss_pred EeccccCCCCCCCCCEEEEeeeE-ecC--chh------hhc---------------------cC---------CC--CcC
Confidence 99999999999999999999876 552 110 000 00 00 111
Q ss_pred cCCChHHHHHHHhhhhhhhccccCCCCCCCCCCeEEEEeeeeehhhhccCHHHHHHHHHHcCceEEecchhHHHHHHHhC
Q 019168 213 LPVDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQFNVSTVDEESAAIVMACLSN 292 (345)
Q Consensus 213 ~~~d~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~v~~G~ig~Sgd~~~~~~~~~~~L~~~~~~~~vdMEsaava~va~~~ 292 (345)
+.+|+.|.+.+.+..+ ..+.++|.|.+ +|||.|+.+.+...++.++++++++|||+||++++|+.+
T Consensus 128 ~~~d~~l~~~~~~~~~-------------~~~~~~~~G~i-~T~D~F~~~~~~~~~~~~~~g~~~vEME~aAl~~va~~~ 193 (233)
T PRK13374 128 AIADYQLLEKAVETAR-------------EKGVPVKVGNV-FSSDLFYDPDEDAIEAMERFGILGVDMEVAGLYGLAAYL 193 (233)
T ss_pred CCCCHHHHHHHHHHHH-------------HcCCCeEEEEE-EEcCcccCCChHHHHHHHHcCCeEEehhHHHHHHHHHHc
Confidence 4567777776654311 12467999999 999999998877777878889999999999999999999
Q ss_pred CCCEEEEEeeccCCCCC
Q 019168 293 AVPSIVFRGVSDLGGGS 309 (345)
Q Consensus 293 ~ip~l~IR~ISD~a~~~ 309 (345)
++||++||+|||.+...
T Consensus 194 gip~~~i~~isD~~~~~ 210 (233)
T PRK13374 194 GAEALAILTVSDHIITG 210 (233)
T ss_pred CCCEEEEEEEEeeeccC
Confidence 99999999999999865
No 14
>PF01048 PNP_UDP_1: Phosphorylase superfamily; InterPro: IPR000845 Phosphorylases in this entry include: Purine nucleoside phosphorylase (2.4.2.1 from EC) (PNP) from most bacteria (gene deoD), which catalyses the cleavage of guanosine or inosine to respective bases and sugar-1-phosphate molecules []. Uridine phosphorylase (2.4.2.3 from EC) (UdRPase) from bacteria (gene udp) and mammals, which catalyses the cleavage of uridine into uracil and ribose-1-phosphate, the products of the reaction are used either as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis []. 5'-methylthioadenosine phosphorylase (2.4.2.28 from EC) (MTA phosphorylase) from Sulfolobus solfataricus []. Purine nucleoside phosphorylase (2.4.2.1 from EC) (PNP) from mammals as well as from some bacteria (gene deoD). This enzyme catalyzes the cleavage of guanosine or inosine to respective bases and sugar-1-phosphate molecules []. 5'-methylthioadenosine phosphorylase (2.4.2.28 from EC) (MTA phosphorylase) from eukaryotes []. ; GO: 0003824 catalytic activity, 0009116 nucleoside metabolic process; PDB: 3OZE_A 1K27_A 1CB0_A 1CG6_A 1SD1_A 3LN5_C 3OZD_B 3OZC_A 1SD2_A 1U1G_C ....
Probab=100.00 E-value=8.8e-33 Score=251.37 Aligned_cols=227 Identities=25% Similarity=0.340 Sum_probs=175.0
Q ss_pred EEEEEecCcHHHHHHHHhhhcccCCCCcccc-cCCcEEEEEEECCEEEEEEeCCCChhHHH-HHHHHHHHhcCCcEEEEE
Q 019168 56 YIGLVMAYPPEESALITSRLFVHNSRIPFID-LAGRRFNVGKIKNVDVIYVMTGEQTVNSG-ITVQILLDAFDIRGVVHY 133 (345)
Q Consensus 56 ~I~Ii~Al~~~E~~~l~~~l~~~~~~~~~~~-~~~~~~~~G~i~g~~Vvv~~~G~G~v~Aa-~~~~~li~~f~~~~ii~~ 133 (345)
+|+||||+ ++|.+.+.+..... .|... ..+++|+.|++++++|+++.+|+|+++++ .+++.+++.|+|+.||++
T Consensus 1 ~i~ii~a~-~~e~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~v~i~~~g~G~~~aa~~~~~~~l~~~~~~~vi~~ 76 (234)
T PF01048_consen 1 RIGIICAM-PEEAEALADLPLEE---TPYFRENRGFTYYTGKYGGKNVVIVSTGMGPVNAAVIATQRLLEEFGPDLVIMI 76 (234)
T ss_dssp EEEEEESS-HHHHHHHHHHEEEE---EEEEEECTTEEEEEEEETTEEEEEEEESSSHHHHHHHHHHHHHHHCTSSEEEEE
T ss_pred CEEEEcCC-HHHHHHHHhhcccC---CCccccCCCcEEEEEEECCEEEEEEECCcCCchHHHHHHHHHHHhCCCeEEEEe
Confidence 58999998 99999988761211 12333 37899999999999999999999999999 999999999999999999
Q ss_pred eeecccCCCCccccEEEeccceeeCCcccccccccCCCCCccCccCCCCCcchhhhhcccccCCcccccCCCCCCccccc
Q 019168 134 GTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWL 213 (345)
Q Consensus 134 GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p~~~~~~~ 213 (345)
|+|||+++++++|||||++.++++|..... ++.. .+ ..+. + ...++
T Consensus 77 G~~G~~~~~~~~GDvvi~~~~~~~d~~~~~-~~~~-~~---------------------~~~~---------~--~~~~~ 122 (234)
T PF01048_consen 77 GICGGLDPDIKLGDVVIPQDAIRYDGDSPS-FFFD-EE---------------------PPYA---------P--VSRPA 122 (234)
T ss_dssp EEEEESSTTS-TTEEEEEEEEEEESSHHGH-HSSE-TT---------------------SGTS---------T--SCSTE
T ss_pred ccccccccccccceEEecccEEeccCcccc-cccc-cc---------------------cccc---------c--ccccc
Confidence 999999999999999999999998852221 1100 00 0000 0 11135
Q ss_pred CCChHHHHHHHhhhhhhhccccCCCCCCCCCCeEEEEeeeeehhhhccCHHHHHHHHHHcCceEEecchhHHHHHHHhCC
Q 019168 214 PVDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQFNVSTVDEESAAIVMACLSNA 293 (345)
Q Consensus 214 ~~d~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~v~~G~ig~Sgd~~~~~~~~~~~L~~~~~~~~vdMEsaava~va~~~~ 293 (345)
+.++.|.+.+.+..+ ..++++|.|.+ +|+|.|+.+.....++.++++++++|||+++++++|++++
T Consensus 123 ~~~~~l~~~~~~~~~-------------~~~~~~~~G~~-~s~~~~~~~~~~~~~~~~~~g~~~vdME~aa~~~~a~~~~ 188 (234)
T PF01048_consen 123 PADPDLREALKEAAK-------------ALGIPVHEGPI-ASGDSFYRETEAEIELLQKFGADAVDMESAAVAQAARERG 188 (234)
T ss_dssp ESHHHHHHHHHHHHH-------------HTTSTEEEEEE-EEESSSSGSHHHHHHHHHHTTEEEEESSHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHhhh-------------ccccccccceE-EEEeeeccchhhHHHHHHhcccccccchHHHHHHHHHHcC
Confidence 678899888776421 12468999999 8999999999777778888899999999999999999999
Q ss_pred CCEEEEEeeccCCCCCC-Cc---cchhhH-HHHHHHHHHHHHHHHH
Q 019168 294 VPSIVFRGVSDLGGGSD-RL---LSISRI-SLASINALRVAAEFIA 334 (345)
Q Consensus 294 ip~l~IR~ISD~a~~~~-~~---~~~~~~-~~Aa~~aa~~~~~~l~ 334 (345)
+||++||+|||+++... .+ ..+..+ ..|+.++.+++.++|+
T Consensus 189 ip~~~i~~isD~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~ 234 (234)
T PF01048_consen 189 IPFIAIRGISDYADGGDDDEWTFEEFKEFLQLAAENAAAILEELLK 234 (234)
T ss_dssp -EEEEEEEEEEETTTTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999877631 11 223445 7788888888888774
No 15
>PRK05819 deoD purine nucleoside phosphorylase; Reviewed
Probab=100.00 E-value=1.3e-31 Score=244.16 Aligned_cols=222 Identities=17% Similarity=0.114 Sum_probs=171.1
Q ss_pred CCCEEEEEecCcHHHHHHHHh-hhcccCCCCcccccCCcEEEEEEECCEEEEEEeCCCChhHHHHHHHHHHHhcCCcEEE
Q 019168 53 GGPYIGLVMAYPPEESALITS-RLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVV 131 (345)
Q Consensus 53 ~~~~I~Ii~Al~~~E~~~l~~-~l~~~~~~~~~~~~~~~~~~~G~i~g~~Vvv~~~G~G~v~Aa~~~~~li~~f~~~~ii 131 (345)
+..+..|++. ||.+...+.+ .+++.+ ...+..++.+|+|+++|++|+++.+|||++|||++++.|+..|+++.||
T Consensus 11 ~~~~~vi~~G-dp~r~~~ia~~~l~~~~---~~~~~r~~~~~~G~~~g~~v~v~~tGiG~~~aai~~~eLi~~~~~~~iI 86 (235)
T PRK05819 11 DIADTVLMPG-DPLRAKYIAETFLEDVV---CVNEVRGMLGFTGTYKGKRVSVMGTGMGIPSISIYANELITDYGVKKLI 86 (235)
T ss_pred ccCCeEEecC-CHHHHHHHHHHHhcCcE---eeeeeccEEEEEEEECCEEEEEEecCCChhHHHHHHHHHHHhcCCcEEE
Confidence 3567888898 5999999976 455443 2346678899999999999999999999999999999999989999999
Q ss_pred EEeeecccCCCCccccEEEeccceeeCCcccccccccCCCCCccCccCCCCCcchhhhhcccccCCcccccCCCCCCccc
Q 019168 132 HYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELF 211 (345)
Q Consensus 132 ~~GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p~~~~~ 211 (345)
++|+|||+++++++|||||++.+++.+. .+.+. |.+. .+
T Consensus 87 ~~GtaG~l~~~l~iGDvVI~~~a~~~~~--~~~~~----------------------------~~~~-----------~~ 125 (235)
T PRK05819 87 RVGSCGALQEDVKVRDVVIAMGASTDSN--VNRIR----------------------------FKGH-----------DF 125 (235)
T ss_pred EEecccCCCCCCCCCCEEEEceeEecCC--ccccc----------------------------cCCC-----------Cc
Confidence 9999999999999999999998875321 11101 1100 00
Q ss_pred ccCCChHHHHHHHhhhhhhhccccCCCCCCCCCCeEEEEeeeeehhhhccCHHHHHHHHHHcCceEEecchhHHHHHHHh
Q 019168 212 WLPVDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQFNVSTVDEESAAIVMACLS 291 (345)
Q Consensus 212 ~~~~d~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~v~~G~ig~Sgd~~~~~~~~~~~L~~~~~~~~vdMEsaava~va~~ 291 (345)
...+|+.|++.+.+..+ ..+.++|.|.+ +|+|.|+.+.+.+..+.++++++++|||+||++++|+.
T Consensus 126 ~~~~d~~l~~~~~~~~~-------------~~~~~~~~G~v-~T~D~f~~~~~~~~~~~~~~g~~~vEME~aAva~va~~ 191 (235)
T PRK05819 126 APIADFDLLRKAYDAAK-------------EKGITVHVGNV-FSADLFYNPDPEMFDVLEKYGVLGVEMEAAALYGLAAK 191 (235)
T ss_pred CccCCHHHHHHHHHHHH-------------HCCCcEEEEEE-EecCcccCCCHHHHHHHHHcCCeEEeccHHHHHHHHHH
Confidence 12467888877666521 12457899999 89999999888777777889999999999999999999
Q ss_pred CCCCEEEEEeeccCCCCCCCccchhhHHHHHHHHHHHHHHHHH
Q 019168 292 NAVPSIVFRGVSDLGGGSDRLLSISRISLASINALRVAAEFIA 334 (345)
Q Consensus 292 ~~ip~l~IR~ISD~a~~~~~~~~~~~~~~Aa~~aa~~~~~~l~ 334 (345)
+++||++||+|||..... ....-+.+.....++++++++.+.
T Consensus 192 ~~ip~~~i~~isd~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~ 233 (235)
T PRK05819 192 YGVKALTILTVSDHIVTG-EATTAEERQTTFNDMIEIALESAI 233 (235)
T ss_pred hCCCEEEEEEEeeecccC-CCCChHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998765 221111224555666666665543
No 16
>TIGR00107 deoD purine-nucleoside phosphorylase, family 1 (deoD). Purine nucleoside phosphorylase (also called inosine phosphorylase) is a purine salvage enzyme. Purine nucleosides, such as guanosine, inosine, or xanthosine, plus orthophosphate, can be converted to their respective purine bases (guanine, hypoxanthine, or xanthine) plus ribose-1-phosphate. This family of purine nucleoside phosphorylase is restricted to the bacteria.
Probab=100.00 E-value=3.2e-31 Score=241.18 Aligned_cols=224 Identities=17% Similarity=0.154 Sum_probs=174.3
Q ss_pred CCCEEEEEecCcHHHHHHHHh-hhcccCCCCcccccCCcEEEEEEECCEEEEEEeCCCChhHHHHHHHHHHHhcCCcEEE
Q 019168 53 GGPYIGLVMAYPPEESALITS-RLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVV 131 (345)
Q Consensus 53 ~~~~I~Ii~Al~~~E~~~l~~-~l~~~~~~~~~~~~~~~~~~~G~i~g~~Vvv~~~G~G~v~Aa~~~~~li~~f~~~~ii 131 (345)
+..+..|+++ ||.+...+.+ .+++.+ ......++.+|+|+++|++|+++.+|||+++|+++++.|+..|+++.+|
T Consensus 8 ~~~~~vi~~G-dp~r~~~ia~~~~~~~~---~~~~~r~~~~~~G~~~g~~v~v~~~G~G~~~aai~~~eli~~~~~~~iI 83 (232)
T TIGR00107 8 DIADVVLMPG-DPLRAKYIAETFLEDAK---EVNEVRGMLGFTGTYKGKKISVMGHGMGIPSISIYVYELIKFYEVKTII 83 (232)
T ss_pred ccCCeEEeCC-CHHHHHHHHHHHhcCcE---eeeeecceEEEEEEECCEEEEEEeCCCCHhHHHHHHHHHHHHcCCCEEE
Confidence 3567888888 5999999975 455443 2455678899999999999999999999999999999999989999999
Q ss_pred EEeeecccCCCCccccEEEeccceeeCCcccccccccCCCCCccCccCCCCCcchhhhhcccccCCcccccCCCCCCccc
Q 019168 132 HYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELF 211 (345)
Q Consensus 132 ~~GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p~~~~~ 211 (345)
++|+|||+++++++||+||++..+++|. .... .|. |. .+
T Consensus 84 ~~Gt~G~l~~~~~~GdvvI~~~a~~~~~--~~~~----------------------------~~~---------~~--~~ 122 (232)
T TIGR00107 84 RIGSCGAIRPDVKLRDVIIAMGASTDSK--YNRV----------------------------RFV---------EV--DF 122 (232)
T ss_pred EEeccccCCCCCCCCCEEEECceeccCC--cchh----------------------------hcC---------CC--Cc
Confidence 9999999999999999999999987652 1100 000 00 01
Q ss_pred ccCCChHHHHHHHhhhhhhhccccCCCCCCCCCCeEEEEeeeeehhhhccCHHHHHHHHHHcCceEEecchhHHHHHHHh
Q 019168 212 WLPVDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQFNVSTVDEESAAIVMACLS 291 (345)
Q Consensus 212 ~~~~d~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~v~~G~ig~Sgd~~~~~~~~~~~L~~~~~~~~vdMEsaava~va~~ 291 (345)
.+.+|+.|.+.+.+..+ ..+.++|.|.+ +|+|.|+.+.....++.++++++++|||+|+++++|+.
T Consensus 123 ~~~ad~~l~~~l~~~~~-------------~~~~~~~~G~~-~S~D~f~~~~~~~~~~~~~~g~~~vEME~aal~~va~~ 188 (232)
T TIGR00107 123 AAIADFELVELAYQTAK-------------ALGLDFHVGNV-FSADAFYQPDKDVFDLMAKYGILAVEMEAAALYANAAE 188 (232)
T ss_pred CccCCHHHHHHHHHHHH-------------HCCCCeEEEEE-eEcCcccCCCHHHHHHHHHcCCeEEehhHHHHHHHHHH
Confidence 14678888887765421 12468999999 89999999776666666788999999999999999999
Q ss_pred CCCCEEEEEeeccCCCCCCCccchhhHHHHHHHHHHHHHHHHHhc
Q 019168 292 NAVPSIVFRGVSDLGGGSDRLLSISRISLASINALRVAAEFIALI 336 (345)
Q Consensus 292 ~~ip~l~IR~ISD~a~~~~~~~~~~~~~~Aa~~aa~~~~~~l~~l 336 (345)
+++|+++||+|||..... ...+...+....++++.++++.+.+|
T Consensus 189 ~~~~~~~i~~vsd~~~~~-~~~~~~~~~~~~~~~~~~al~~~~~~ 232 (232)
T TIGR00107 189 LGAKALTILTVSDHLVTH-EALTAEERQTTFKDMIILALEMVSQL 232 (232)
T ss_pred cCCcEEEEEEEEeecccC-CCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999998766 22112223555577777777776543
No 17
>PRK11178 uridine phosphorylase; Provisional
Probab=100.00 E-value=1.1e-31 Score=246.58 Aligned_cols=218 Identities=16% Similarity=0.195 Sum_probs=161.5
Q ss_pred CEEEEEecCcHHHHHHHHhhhcccCCCCcccccCCcEEEEEEECCEEEEEEeCCCChhHHHHHHHHHHHhcCCcEEEEEe
Q 019168 55 PYIGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVHYG 134 (345)
Q Consensus 55 ~~I~Ii~Al~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~G~i~g~~Vvv~~~G~G~v~Aa~~~~~li~~f~~~~ii~~G 134 (345)
.+|+|++|+ |+|.+.+.+.|+..+. .....++++|+|+++|++|+++.+|||++|||++++.|+. ++++.||++|
T Consensus 17 ~~i~Ii~g~-p~e~~~ia~~l~~~~~---~~~~~~~~~~~G~~~g~~v~v~~~GiG~~~Aa~~~~eLi~-~g~~~iI~~G 91 (251)
T PRK11178 17 ATLAIVPGD-PERVEKIAALMDNPVF---LASHREFTSWRAELDGKPVIVCSTGIGGPSTSIAVEELAQ-LGVRTFLRIG 91 (251)
T ss_pred CCEEEECCC-HHHHHHHHHHhccchh---eeeccCeEEEEEEEcCEEEEEEecCCCHHHHHHHHHHHHH-cCCCEEEEEe
Confidence 579999997 9999999888766541 2347788999999999999999999999999999999986 6999999999
Q ss_pred eecccCCCCccccEEEeccceeeCCcccccccccCCCCCccCccCCCCCcchhhhhcccccCCcccccCCCCCCcccccC
Q 019168 135 TAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWLP 214 (345)
Q Consensus 135 iaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p~~~~~~~~ 214 (345)
+|||+++++++|||||++.++++|. +.++|.+++. |... .+.
T Consensus 92 taG~l~~~l~~GDvVI~~~a~~~Dg---~s~~y~~~~~---------------------------------p~~~--~~~ 133 (251)
T PRK11178 92 TTGAIQPHINVGDVLVTTASVRLDG---ASLHFAPLEF---------------------------------PAVA--DFE 133 (251)
T ss_pred ccccCCCCCCCCCEEEecceecCCC---CccccCCCCc---------------------------------CCCC--CHH
Confidence 9999999999999999999999984 3333333222 1111 134
Q ss_pred CChHHHHHHHhhhhhhhccccCCCCCCCCCCeEEEEeeeeehhhhccCHHHHH----HH----------HHHcCceEEec
Q 019168 215 VDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYRE----FL----------FKQFNVSTVDE 280 (345)
Q Consensus 215 ~d~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~v~~G~ig~Sgd~~~~~~~~~~----~L----------~~~~~~~~vdM 280 (345)
.++.|.+.+.++ +.++|.|.+ +|||.|+.+.+.++ .+ +++++++++||
T Consensus 134 ~~~~L~~~~~~~-----------------~~~~~~G~i-~S~D~Fy~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~avEM 195 (251)
T PRK11178 134 CTTALVEAAKSI-----------------GATTHVGVT-ASSDTFYPGQERYDTYSGRVVRRFKGSMEEWQAMGVMNYEM 195 (251)
T ss_pred HHHHHHHHHHHc-----------------CCCEEEEEE-eecCcccCCCCccccccccchhhHHHHHHHHHHcCCeEEeh
Confidence 455666555432 357999999 99999997654322 11 22349999999
Q ss_pred chhHHHHHHHhCCCCEEEEEeeccCCCCCCCccchhhHHHHHHHHHHHHHHHHH
Q 019168 281 ESAAIVMACLSNAVPSIVFRGVSDLGGGSDRLLSISRISLASINALRVAAEFIA 334 (345)
Q Consensus 281 Esaava~va~~~~ip~l~IR~ISD~a~~~~~~~~~~~~~~Aa~~aa~~~~~~l~ 334 (345)
|+||++++|+.+|+++.+|-.+......++.. +-.....+...+.++++.-+.
T Consensus 196 EsAAla~va~~~gv~a~~v~~~~~~r~~~~~~-~~~~~~~~~~~~~~~~l~~~~ 248 (251)
T PRK11178 196 ESATLLTMCASQGLRAGMVAGVIVNRTQQEIP-NAETMKQTESHAVKIVVEAAR 248 (251)
T ss_pred hHHHHHHHHHHcCCcEEEEEEEEecccccccC-chHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998777775443111 111123444445555544443
No 18
>TIGR01718 Uridine-psphlse uridine phosphorylase. Sequences from Clostridium, Streptomyces, Treponema, Halobacterium and Pyrobaculum were included above trusted on the basis of sequence homology and a PAM-based neighbor-joining tree. A clade including second sequences from Halobacterium and Vibrio was somewhat more distantly related and may represent a slightly different substrate specificity - these were placed below the noise cutoff. More distantly related is a clade of archaeal sequences which as related to the DeoD family of inosine phosphorylases (TIGR00107) as they are to these uridine phosphorylases. This clade includes a characterized protein from Sulfolobus solfataricus which has been mis-named as a methylthioadenosine phosphorylase, but which acts on inosine and guanosine - it is unclear whether uridine has been evaluated as a substrate.
Probab=99.97 E-value=9.9e-30 Score=233.16 Aligned_cols=221 Identities=16% Similarity=0.177 Sum_probs=162.4
Q ss_pred CCCEEEEEecCcHHHHHHHHhhhcccCCCCcccccCCcEEEEEEECCEEEEEEeCCCChhHHHHHHHHHHHhcCCcEEEE
Q 019168 53 GGPYIGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVH 132 (345)
Q Consensus 53 ~~~~I~Ii~Al~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~G~i~g~~Vvv~~~G~G~v~Aa~~~~~li~~f~~~~ii~ 132 (345)
+...+.|+++. |+|...+.+.|.+.. ......++.+|+|+++|++|+++.+|||++||+++++.|+. ++++.+|+
T Consensus 10 d~~~~vi~~Gd-p~r~~~ia~~l~~~~---~~~~~r~~~~~~G~~~g~~v~v~~~GiG~~~aai~~~eLi~-~g~~~iIr 84 (245)
T TIGR01718 10 DIQTYVILPGD-PDRVEKIAAHMDKPV---KVASNREFVTYRGELDGKPVIVCSTGIGGPSTAIAVEELAQ-LGARTFIR 84 (245)
T ss_pred hcCCeEEecCC-HHHHHHHHHhcCCcE---EEeccCCEEEEEEEECCEEEEEEcCCCCHHHHHHHHHHHHH-hCCCEEEE
Confidence 45678999995 999999988875543 12345567779999999999999999999999999999997 79999999
Q ss_pred EeeecccCCCCccccEEEeccceeeCCcccccccccCCCCCccCccCCCCCcchhhhhcccccCCcccccCCCCCCcccc
Q 019168 133 YGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFW 212 (345)
Q Consensus 133 ~GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p~~~~~~ 212 (345)
+|+|||+++++++|||||++.++++|. +.++|.+++. |.
T Consensus 85 ~GtaG~l~~~~~~GDiVI~~~a~~~Dg---~~~~y~~~~~---------------------------------p~----- 123 (245)
T TIGR01718 85 VGTTGAIQPHINVGDVLITTAAVRLDG---ASLHYAPLEF---------------------------------PA----- 123 (245)
T ss_pred eeccccCCCCCCCCCEEEeCceecCCC---cccccCCCCc---------------------------------CC-----
Confidence 999999999999999999999999983 3333322111 11
Q ss_pred cCCChHHHHHHHhhhhhhhccccCCCCCCCCCCeEEEEeeeeehhhhccCHHH-----------HHHH--HHHcCceEEe
Q 019168 213 LPVDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAY-----------REFL--FKQFNVSTVD 279 (345)
Q Consensus 213 ~~~d~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~v~~G~ig~Sgd~~~~~~~~-----------~~~L--~~~~~~~~vd 279 (345)
.+|..+.+.+.+..+ ..+.+++.|.+ +|+|.|+.+.+. ++.+ .+.++++++|
T Consensus 124 -~~d~~l~~~l~~~~~-------------~~~~~~~~G~v-~T~D~F~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vE 188 (245)
T TIGR01718 124 -VADFEVTTALVEAAE-------------SIGVRHHVGVV-ASSDTFYPGQERDTYSGRVVRHFKGSMEAWQAMGVLNYE 188 (245)
T ss_pred -CCCHHHHHHHHHHHH-------------HcCCCeEEEEE-EECCcCcCCCCccccccccchhHHHHHHHHHHcCceEeh
Confidence 124555544443311 01357999999 999999986542 1222 2345999999
Q ss_pred cchhHHHHHHHhCCCCEEEEEeeccCCCCCCCccchhhHHHHHHHHHHHHHHHHHh
Q 019168 280 EESAAIVMACLSNAVPSIVFRGVSDLGGGSDRLLSISRISLASINALRVAAEFIAL 335 (345)
Q Consensus 280 MEsaava~va~~~~ip~l~IR~ISD~a~~~~~~~~~~~~~~Aa~~aa~~~~~~l~~ 335 (345)
||+||++++|+.+++|+.+|-.+++...+. ...+.+.......++.++++.-+..
T Consensus 189 ME~aal~~va~~~gi~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~i~~al~a~~~ 243 (245)
T TIGR01718 189 MESATLFTLCSSQGLRAGMVAGVIVNRTQQ-EIPNEETMKQTEEHAIKVAVEAVKR 243 (245)
T ss_pred hhHHHHHHHHHHcCCcEEEEEEEEeccccc-ccCchHHHHHhHHHHHHHHHHHHHh
Confidence 999999999999999999999988886544 2211111245555666666655543
No 19
>PRK07115 AMP nucleosidase; Provisional
Probab=99.96 E-value=2.7e-28 Score=224.08 Aligned_cols=218 Identities=11% Similarity=0.064 Sum_probs=156.7
Q ss_pred CCCEEEEEecCcHHHHHHHHhhhcccCCCCcccccCCcEEEEEEECCEEEEEEeCCCChhHHHHHHHHHHHhcCCcEEEE
Q 019168 53 GGPYIGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVH 132 (345)
Q Consensus 53 ~~~~I~Ii~Al~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~G~i~g~~Vvv~~~G~G~v~Aa~~~~~li~~f~~~~ii~ 132 (345)
..+..+|++.. |...+.+.+.++.+. . -..+.|...+ |.+|.++.+|||+++||++++.|+. ++++.+|+
T Consensus 22 ~~~~~vl~~gd-p~r~~~ia~~~~~~~-----~-~~~r~~~~~~--g~~vsv~~~GIG~psAai~~eeL~~-~g~~~iIr 91 (258)
T PRK07115 22 EFGPYILLTNF-SYYVEVFAELFGVPV-----S-GSMFSMAHAT--AEGITIINFGMGSPNAATIMDLLSA-LNPKAVLF 91 (258)
T ss_pred HcCCEEEECCC-hHHHHHHHHHcCCce-----e-cccceeeccC--CCEEEEEeCCCCHHHHHHHHHHHHH-cCCCEEEE
Confidence 45678899985 999999988765432 2 2344555544 9999999999999999999987765 59999999
Q ss_pred EeeecccCCCCccccEEEeccceeeCCcccccccccCCCCCccCccCCCCCcchhhhhcccccCCcccccCCCCCCcccc
Q 019168 133 YGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFW 212 (345)
Q Consensus 133 ~GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p~~~~~~ 212 (345)
+|+|||+++++++||+||++..+++|. +.++|.+++. |
T Consensus 92 ~GtaGaL~~~l~~GDiVI~t~avr~dg---ts~~Y~p~~~---------------------------------p------ 129 (258)
T PRK07115 92 LGKCGGLKSKYQVGDYFLPIAAIRGEG---TSDDYFPPEV---------------------------------P------ 129 (258)
T ss_pred EecccCcCCCCCCCCEEEEEEEEEcCC---ccccccCCcc---------------------------------C------
Confidence 999999999999999999999999873 4333322111 1
Q ss_pred cCCChHHHHHHHhhhhhhhccccCCCCCCCCCCeEEEEeeeeehhhhc-cCHHHHHHHHHHcCceEEecchhHHHHHHHh
Q 019168 213 LPVDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFL-DNAAYREFLFKQFNVSTVDEESAAIVMACLS 291 (345)
Q Consensus 213 ~~~d~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~v~~G~ig~Sgd~~~-~~~~~~~~L~~~~~~~~vdMEsaava~va~~ 291 (345)
..++..|.+.+.+..+ ..+.++|.|.+ +|+|.|+ ...+......+.++++++|||+||++++|+.
T Consensus 130 a~~d~~l~~~l~~~~~-------------~~~~~~~~G~v-~StD~ff~~~~~~~~~~~~~~g~~avEME~AAl~~va~~ 195 (258)
T PRK07115 130 ALPNFVLQKAVSSIIR-------------DKGLDYWTGTV-YTTNRRFWEHDKEFKEYLYETRAQAIDMETATLFAAGFA 195 (258)
T ss_pred cCCCHHHHHHHHHHHH-------------HcCCCeEEEEE-EecCCCccCCcHHHHHHHHHcCCeEEehhHHHHHHHHHH
Confidence 1235556666555421 12457999999 9999855 3333333334457999999999999999999
Q ss_pred CCCCEEEEEeeccCCCCCCCccch---hhH-HHHHHHHHHHHHHHHHhc
Q 019168 292 NAVPSIVFRGVSDLGGGSDRLLSI---SRI-SLASINALRVAAEFIALI 336 (345)
Q Consensus 292 ~~ip~l~IR~ISD~a~~~~~~~~~---~~~-~~Aa~~aa~~~~~~l~~l 336 (345)
+++|+++||.|||....++...++ .+. ..+..+++++++..+..|
T Consensus 196 ~gv~~~~i~~isD~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~a~~~l 244 (258)
T PRK07115 196 NNIPTGALLLISDLPLRPEGVKTKESDNKVTKTYTEEHIEIGIEALKSL 244 (258)
T ss_pred cCCcEEEEEEEecccCCCcccCCccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999654121111 222 445555666666655553
No 20
>TIGR01719 euk_UDPppase uridine phosphorylase. This model represents a clade of mainly eucaryotic uridine phosphorylases. Genes from human and mouse have been characterized. This enzyme is a member of the PHP/UDP subfamily (pfam01048) and is closely related to the bacterial uridine (TIGR01718) and inosine (TIGR00107) phosphorylase equivalogs. In addition to the eukaryotes, a gene from Mycobacterium leprae is included in this equivalog and may have resulted from lateral gene transfer.
Probab=99.96 E-value=1.1e-27 Score=223.59 Aligned_cols=228 Identities=14% Similarity=0.050 Sum_probs=164.3
Q ss_pred EEEEEecCcHHHHHHHHhhhcccCCCCcccccCCcEEEE---EEECCEEEEEEeCCCChhHHHHHHHHHHHh---c--CC
Q 019168 56 YIGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNV---GKIKNVDVIYVMTGEQTVNSGITVQILLDA---F--DI 127 (345)
Q Consensus 56 ~I~Ii~Al~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~---G~i~g~~Vvv~~~G~G~v~Aa~~~~~li~~---f--~~ 127 (345)
++.|++. ||.+.+.+.+.|+.............+..++ |+++|.+|+++.+|||++||++++++|+.. | ++
T Consensus 32 ~~vi~~G-DP~Ra~~iA~~l~~~~~~~~~~~~r~~~~~t~r~g~ykg~~V~v~stGIG~psaaI~~~ELi~~~~~~~~~~ 110 (287)
T TIGR01719 32 KFVCMGG-TPSRMKAFARYVGAELGLSCGRDYPNISERGDRFAMYKVGPVLCVSHGMGIPSISIMLHELIKLLYYARCKN 110 (287)
T ss_pred CEEEeCC-CHHHHHHHHHHHhhhhcccccccceeeeeeccccEEEccEEEEEEecCCCcchHHHHHHHHHHhhhhcCCCC
Confidence 7888888 6999999988877643100011222233233 899999999999999999999999999985 4 55
Q ss_pred cEEEEEeeecccCCCCccccEEEeccceeeCCcccccccccCCCCCccCccCCCCCcchhhhhcccccCCcccccCCCCC
Q 019168 128 RGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPM 207 (345)
Q Consensus 128 ~~ii~~GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p~ 207 (345)
+.||++|+|||+ ++++|||||++.++++|. +.+ + ++.+. +.|.
T Consensus 111 ~~IIRiGtaG~l--~i~iGDvVIat~a~~~d~-~~~-~----~~~~~-----------------------------~~~~ 153 (287)
T TIGR01719 111 PTFIRIGTSGGI--GVPPGTVVVSSEAVDACL-KPE-Y----EQIVL-----------------------------GKRV 153 (287)
T ss_pred ceEEEEeccccC--CCCCCCEEEEchhhhccc-Cch-H----hhccc-----------------------------CCCc
Confidence 699999999999 699999999999998874 111 1 11110 0010
Q ss_pred CcccccCCChHHHHHHHhhhhhhhccccCCCCCCCCCCeEEEEeeeeehhhhccC-------------HHHHHHHHHHc-
Q 019168 208 EELFWLPVDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDN-------------AAYREFLFKQF- 273 (345)
Q Consensus 208 ~~~~~~~~d~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~v~~G~ig~Sgd~~~~~-------------~~~~~~L~~~~- 273 (345)
.+.+.+|+.|.+.+.+..+- + ..+.++|.|.+ +|+|.|+.+ .+..+.+.+.+
T Consensus 154 --~~~~~aD~~L~~~l~~aa~~-~----------~~~~~~~~G~i-~S~D~Fy~~q~r~~~~~~~~~~~~~~~~i~~~~~ 219 (287)
T TIGR01719 154 --IRPTQLDEALVQELLLCGAE-G----------LDEFTTVSGNT-MCTDDFYEGQGRLDGAFCEYTEKDKMAYLRKLYA 219 (287)
T ss_pred --ccCCCCCHHHHHHHHHHHHh-h----------cCCCCeEEEEE-ccCCcccCCCCcccccccccchhhhHHHHHHHHH
Confidence 11145799998887765210 0 01357999999 899999996 22344555544
Q ss_pred -CceEEecchhHHHHHHHhCCCCEEEEE-eeccCCCCCCCccchhhH-HHHHHHHHHHHHHHHHhc
Q 019168 274 -NVSTVDEESAAIVMACLSNAVPSIVFR-GVSDLGGGSDRLLSISRI-SLASINALRVAAEFIALI 336 (345)
Q Consensus 274 -~~~~vdMEsaava~va~~~~ip~l~IR-~ISD~a~~~~~~~~~~~~-~~Aa~~aa~~~~~~l~~l 336 (345)
+++++|||+|+++++|+.+|+|+++|+ .++|..++. ......+. ..+..++++++.++|...
T Consensus 220 ~gv~~vEMEsaal~~va~~~gv~a~~I~~~i~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~ 284 (287)
T TIGR01719 220 LGVRNIEMESSMFAAMTSRAGFKAAVVCVTLLNRLEGD-QITITRDQLHEFEQRPQRLVSRYIKKK 284 (287)
T ss_pred cCCeEEehhHHHHHHHHHHcCCcEEEEEEeeeccccCC-ccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999 778876654 21111344 777788888888888764
No 21
>PRK05634 nucleosidase; Provisional
Probab=99.96 E-value=3.4e-28 Score=213.57 Aligned_cols=177 Identities=24% Similarity=0.211 Sum_probs=136.0
Q ss_pred CEEEEEecCcHHHHHHHHhhhcccCCCCcccccCCcEEEEEEECCEEEEEEeCCCChhHHHHHHHHHHH--hcCCcEEEE
Q 019168 55 PYIGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLD--AFDIRGVVH 132 (345)
Q Consensus 55 ~~I~Ii~Al~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~G~i~g~~Vvv~~~G~G~v~Aa~~~~~li~--~f~~~~ii~ 132 (345)
.+|++++|+ +.|...+. . .+.++.||||++|||++++.++. .|+|+.||+
T Consensus 4 ~~~l~v~a~-~~E~~~~~------~---------------------~~~~~~sGIGkvnaA~~~~~~L~~~~~~p~~iIn 55 (185)
T PRK05634 4 TRVLVVSAT-KEEAVYVP------A---------------------GLPLLITGIGKVAAAVALTRALARRGVLPPRVVN 55 (185)
T ss_pred ccEEEEEec-HHHHhhcc------C---------------------CCEEEEcCCCHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 469999999 77775431 0 36667799999999999877665 599999999
Q ss_pred EeeecccCCCCccccEEEeccceeeCCcccccccccCCCCCccCccCCCCCcchhhhhcccccCCcccccCCCCCCcccc
Q 019168 133 YGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFW 212 (345)
Q Consensus 133 ~GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p~~~~~~ 212 (345)
+|+|||+++++. |+++++++++||. +...++..+ ++.
T Consensus 56 ~G~AG~l~~~l~--~vv~~~~v~~~D~-~~~~~~~~~------------------------~~~---------------- 92 (185)
T PRK05634 56 IGTAGALRDGLS--GVFEPSHVINHDF-SSDLIRALT------------------------GHP---------------- 92 (185)
T ss_pred eecccCCCcCCC--eEEEEeeEEEccc-Ccccccccc------------------------Ccc----------------
Confidence 999999999765 8999999999985 222111000 000
Q ss_pred cCCChHHHHHHHhhhhhhhccccCCCCCCCCCCeEEEEeeeeehhhhccCHHHHHHHHHHcCceEEecchhHHHHHHHhC
Q 019168 213 LPVDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQFNVSTVDEESAAIVMACLSN 292 (345)
Q Consensus 213 ~~~d~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~v~~G~ig~Sgd~~~~~~~~~~~L~~~~~~~~vdMEsaava~va~~~ 292 (345)
....+ . + +....|.+ +|||.|+.+++.+++|.+ ++.++|||++|++++|+.+
T Consensus 93 --~~~~~-----~-----~-------------~~~~~g~i-~sgD~fvs~~~~~~~l~~--~a~~vDME~aAva~va~~~ 144 (185)
T PRK05634 93 --VANRL-----E-----L-------------PTGDGAVL-ATGDAFISDTATRDRLAQ--RADLVDMEGYAVAAVAAEF 144 (185)
T ss_pred --ccccc-----c-----c-------------ccCCCceE-ecCCceecCHHHHHHHhc--cCeEEecHHHHHHHHHHHh
Confidence 00000 0 0 01123777 899999999998888865 7899999999999999999
Q ss_pred CCCEEEEEeeccCCCCCCCccchhhH-HHHHHHHHHHHHH
Q 019168 293 AVPSIVFRGVSDLGGGSDRLLSISRI-SLASINALRVAAE 331 (345)
Q Consensus 293 ~ip~l~IR~ISD~a~~~~~~~~~~~~-~~Aa~~aa~~~~~ 331 (345)
++||++||+|||.+++. ...+|+.| ..|++++++++++
T Consensus 145 ~vPf~~iR~ISD~a~~~-~~~~~~~~~~~aa~~~~~~~~~ 183 (185)
T PRK05634 145 GVPCRLVKHVSDSADES-ALGSWPEAVDASARELGEWLAE 183 (185)
T ss_pred CCCEEEEEEeccCCCCc-ccccHHHHHHHHHHHHHHHHHh
Confidence 99999999999999987 77789999 9999999986654
No 22
>PRK08666 5'-methylthioadenosine phosphorylase; Validated
Probab=99.96 E-value=7.7e-28 Score=222.66 Aligned_cols=229 Identities=14% Similarity=0.090 Sum_probs=164.6
Q ss_pred CEEEEEecCcHHHHHHHHhhh-cccCCCCcccccCCcEEEEEEECCEEEE-EEeCCCC------hhHHHHHHHHHHHhcC
Q 019168 55 PYIGLVMAYPPEESALITSRL-FVHNSRIPFIDLAGRRFNVGKIKNVDVI-YVMTGEQ------TVNSGITVQILLDAFD 126 (345)
Q Consensus 55 ~~I~Ii~Al~~~E~~~l~~~l-~~~~~~~~~~~~~~~~~~~G~i~g~~Vv-v~~~G~G------~v~Aa~~~~~li~~f~ 126 (345)
|+||||+++ ..|...+.+.+ .... .+.+++.+|+.|+++|++|+ +.++|+| ++|++..++. ++.++
T Consensus 2 ~~igII~gs-gl~~~~l~~~~~~~~~----~~~~g~~~~~~G~~~g~~Vv~l~~~G~gh~~~~~kVn~~a~~~~-l~~~G 75 (261)
T PRK08666 2 VRIAIIGGS-GVYDPKILENIREETV----ETPYGEVKVKIGTYAGEEVAFLARHGEGHSVPPHKINYRANIWA-LKELG 75 (261)
T ss_pred CcEEEEecC-CCCccchhhhccccee----EeeCCCCEEEEEEECCEEEEEEeCCCCCCccChhhcchHHHHHH-HHHCC
Confidence 689999998 55554344444 2222 45577789999999999998 5779999 9997777665 88899
Q ss_pred CcEEEEEeeecccCCCCccccEEEeccceeeCCcccccccccCCCCCccCccCCCCCcchhhhhcccccCCcccccCCCC
Q 019168 127 IRGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKP 206 (345)
Q Consensus 127 ~~~ii~~GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p 206 (345)
++.||++|+|||+++++++||+||++..+++|...-.. ++..++.+. . +
T Consensus 76 v~~II~tgsaGsl~~~l~~GDiVi~~d~i~~~~~~~~~-~~~~~~~~~---------------------~---------~ 124 (261)
T PRK08666 76 VERILATSAVGSLNPNMKPGDFVILDQFLDFTKNRHYT-FYDGGESGV---------------------V---------H 124 (261)
T ss_pred CCEEEEeccccccCCCCCCCCEEeehhhhhcCCCCCcc-ccCCCCCCc---------------------C---------C
Confidence 99999999999999999999999999999987411000 011111100 0 0
Q ss_pred CCcccccCCChHHHHHHHhhhhhhhccccCCCCCCCCCCeEEEE-e-eeeehhhhccCHHHHHHHHHHcCceEEecchhH
Q 019168 207 MEELFWLPVDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVG-L-RGSTADIFLDNAAYREFLFKQFNVSTVDEESAA 284 (345)
Q Consensus 207 ~~~~~~~~~d~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~v~~G-~-ig~Sgd~~~~~~~~~~~L~~~~~~~~vdMEsaa 284 (345)
.+. .++.|++|.+.+.+..+ +.+.++|.| + +..+||.|.+.++.+ +.+++|++++|||+++
T Consensus 125 -~~~-~~~~d~~L~~~~~~~a~-------------~~g~~~~~ggvy~~~~Gp~fet~ae~~--~~~~~gad~V~Me~~~ 187 (261)
T PRK08666 125 -VDF-TDPYCPELRKALITAAR-------------ELGLTYHPGGTYVCTEGPRFETAAEIR--MFRILGGDLVGMTQVP 187 (261)
T ss_pred -CCC-CcccCHHHHHHHHHHHH-------------HCCCceEeccEEEEeeCCCcCCHHHHH--HHHHcCCCEEccchHH
Confidence 001 24669999998877631 013467764 3 335799997776653 4578899999999999
Q ss_pred HHHHHHhCCCCEEEEEeeccCCCCC-CCccchhhH-HHHHHHHH---HHHHHHHHhcc
Q 019168 285 IVMACLSNAVPSIVFRGVSDLGGGS-DRLLSISRI-SLASINAL---RVAAEFIALID 337 (345)
Q Consensus 285 va~va~~~~ip~l~IR~ISD~a~~~-~~~~~~~~~-~~Aa~~aa---~~~~~~l~~l~ 337 (345)
++++|+.+|+||++||.|||+++.. +...+++++ ..++++++ +++.+++..++
T Consensus 188 e~~~A~~~gi~~~~i~~vsn~a~~~~~~~~~~~e~~~~~~~~~~~~~~ll~~~~~~~~ 245 (261)
T PRK08666 188 EAVLARELEMCYATVAIVTNYAAGISPTKLTHSEVVELMAQNSENIKKLIMKAIELIP 245 (261)
T ss_pred HHHHHHHCCCcEEEEEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999732 145567777 66666654 44555555554
No 23
>TIGR01700 PNPH purine nucleoside phosphorylase I, inosine and guanosine-specific. Several metazoan enzymes (PNPH) are well characterized including the human and bovine enzymes which have been crystallized.
Probab=99.96 E-value=1.2e-27 Score=219.63 Aligned_cols=197 Identities=13% Similarity=0.120 Sum_probs=155.2
Q ss_pred cEEEEEEECCEEEEEEeCCC----ChhHHHHH-HHHHHHhcCCcEEEEEeeecccCCCCccccEEEeccceeeCCccccc
Q 019168 90 RRFNVGKIKNVDVIYVMTGE----QTVNSGIT-VQILLDAFDIRGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKA 164 (345)
Q Consensus 90 ~~~~~G~i~g~~Vvv~~~G~----G~v~Aa~~-~~~li~~f~~~~ii~~GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~~ 164 (345)
-.|+.|+++|++|+++.+|+ |+++++++ .+++++.|+++.||++|+|||+++++++||+||++..+++|. .++
T Consensus 41 ~~~~~G~i~g~~Vv~~~~~iH~~~Gk~~a~i~~~~~ll~~~gv~~II~~gsaGsl~~~l~~GDiVi~~d~i~~~~--~~~ 118 (249)
T TIGR01700 41 GNLVFGILGGKPVVAMQGRFHMYEGYDMAKVTFPVRVMKLLGVETLVVTNAAGGINPEFKVGDLMLIRDHINLPG--FNP 118 (249)
T ss_pred ccEEEEEECCEEEEEEcCCccccCCcCHHHccHHHHHHHHcCCCEEEEecccccCCCCCCCCCEEEEhhHhhCCC--CCC
Confidence 46999999999999999988 99999999 499999999999999999999999999999999999999874 111
Q ss_pred c-cccCCCCCccCccCCCCCcchhhhhcccccCCcccccCCCCCCcccccCCChHHHHHHHhhhhhhhccccCCCCCCCC
Q 019168 165 F-KSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWLPVDSEWFDIATQLQDLELRRCLNDTYCLPE 243 (345)
Q Consensus 165 ~-g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p~~~~~~~~~d~~l~~~a~~~~~~~l~~~~~~~~~~~~ 243 (345)
+ |+.. .. ++.. .|.. ..+.|++|.+.+.+..+- .
T Consensus 119 l~g~~~--------~~-------------~~~~--------~~~~---~~~~d~~L~~~~~~~a~~-------------~ 153 (249)
T TIGR01700 119 LRGPNE--------ER-------------FGVR--------FPDM---SDAYDRDLRQKAHSIAKQ-------------L 153 (249)
T ss_pred ccCCCC--------cC-------------CCCe--------eCCC---CcccCHHHHHHHHHHHHH-------------c
Confidence 1 1000 00 0000 0100 013488999888775210 1
Q ss_pred CCeEEEEe--eeeehhhhccCHHHHHHHHHHcCceEEecchhHHHHHHHhCCCCEEEEEeeccCCCCC-CCccchhhH-H
Q 019168 244 RPKVIVGL--RGSTADIFLDNAAYREFLFKQFNVSTVDEESAAIVMACLSNAVPSIVFRGVSDLGGGS-DRLLSISRI-S 319 (345)
Q Consensus 244 ~~~v~~G~--ig~Sgd~~~~~~~~~~~L~~~~~~~~vdMEsaava~va~~~~ip~l~IR~ISD~a~~~-~~~~~~~~~-~ 319 (345)
+.+++.|+ + +|||.|.+.++. ++.+++|++++|||+++++++|+++++||++||.|||+++.. +...+|.++ .
T Consensus 154 ~~~~~~G~y~~-~sGp~F~t~aE~--~~~~~~gad~V~Me~aaea~~A~~~gv~~~~i~~vsd~a~~~~~~~~~~~~~v~ 230 (249)
T TIGR01700 154 NIPLQEGVYVM-LGGPSYETPAEV--RLLRTLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKAAGILDYELSVHEEVM 230 (249)
T ss_pred CCccceEEEEE-eeCCCcCCHHHH--HHHHHcCCCEEecchHHHHHHHHHcCCcEEEEEEEeecccccCcCCCCHHHHHH
Confidence 34578898 6 899999976655 477889999999999999999999999999999999999852 145566777 8
Q ss_pred HHHHHHHHHHHHHHHhc
Q 019168 320 LASINALRVAAEFIALI 336 (345)
Q Consensus 320 ~Aa~~aa~~~~~~l~~l 336 (345)
.+++++++.+.++|+.+
T Consensus 231 ~~~~~~~~~~~~ll~~~ 247 (249)
T TIGR01700 231 EAAKQAAEKLEKFVSLL 247 (249)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999875
No 24
>TIGR01697 PNPH-PUNA-XAPA inosine guanosine and xanthosine phosphorylase family. Sequences from Clostridium and Thermotoga fall between these last two clades and are uncharacterized with respect to substrate range and operon.
Probab=99.96 E-value=2.1e-27 Score=218.12 Aligned_cols=197 Identities=13% Similarity=0.132 Sum_probs=151.3
Q ss_pred cEEEEEEECCEEEEEEeCCC----ChhHHHHHH-HHHHHhcCCcEEEEEeeecccCCCCccccEEEeccceeeCCccccc
Q 019168 90 RRFNVGKIKNVDVIYVMTGE----QTVNSGITV-QILLDAFDIRGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKA 164 (345)
Q Consensus 90 ~~~~~G~i~g~~Vvv~~~G~----G~v~Aa~~~-~~li~~f~~~~ii~~GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~~ 164 (345)
-.|+.|+++|++|+++.+|+ |++++++.+ .+++.+|+++.||++|+|||+++++++||+||++.++++|.. ++
T Consensus 41 ~~~~~G~~~g~~Vv~~~~gih~~~Gk~~~a~~~~~~~l~~~Gv~~II~~GsaGsl~~~l~~GDiVI~~~~i~~~~~--~~ 118 (248)
T TIGR01697 41 GELVFGRLGGKPVVCMQGRFHYYEGYDMATVTFPVRVMKLLGVEILVVTNAAGGLNPDFKPGDLMIIKDHINLPGL--NP 118 (248)
T ss_pred ccEEEEEECCEEEEEEcCCCcccCCCCHHHHHHHHHHHHHcCCCEEEEecccccCCCCCCCCCEEEEhhhhhcCCC--CC
Confidence 36999999999999999999 999998887 459999999999999999999999999999999999998741 11
Q ss_pred -ccccCCCCCccCccCCCCCcchhhhhcccccCCcccccCCCCCCcccccCCChHHHHHHHhhhhhhhccccCCCCCCCC
Q 019168 165 -FKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWLPVDSEWFDIATQLQDLELRRCLNDTYCLPE 243 (345)
Q Consensus 165 -~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p~~~~~~~~~d~~l~~~a~~~~~~~l~~~~~~~~~~~~ 243 (345)
++..... ++ .. .|... .+.|++|.+.+.+..+ +.
T Consensus 119 ~~~~~~~~---------------------~~---~~-----~~~~~---~~~d~~L~~~l~~~a~-------------~~ 153 (248)
T TIGR01697 119 LVGPNDDR---------------------FG---TR-----FPDLS---NAYDRELRKLAQDVAK-------------EL 153 (248)
T ss_pred ccCCCccc---------------------CC---ce-----eCCCC---cccCHHHHHHHHHHHH-------------Hc
Confidence 0100000 00 00 01100 1248999988877521 11
Q ss_pred CCeEEEEe--eeeehhhhccCHHHHHHHHHHcCceEEecchhHHHHHHHhCCCCEEEEEeeccCCCC-CCCccchhhHHH
Q 019168 244 RPKVIVGL--RGSTADIFLDNAAYREFLFKQFNVSTVDEESAAIVMACLSNAVPSIVFRGVSDLGGG-SDRLLSISRISL 320 (345)
Q Consensus 244 ~~~v~~G~--ig~Sgd~~~~~~~~~~~L~~~~~~~~vdMEsaava~va~~~~ip~l~IR~ISD~a~~-~~~~~~~~~~~~ 320 (345)
+.++|.|+ + +|||.|...++. ++.++++++++|||+++++++|+++++||++||.|||++++ .+...+++++..
T Consensus 154 ~~~~~~G~~~~-~~G~~f~t~~e~--~~~~~~g~~~VeME~aa~a~lA~~~gv~~~~i~~Vsd~a~g~~~~~~~~~~~~~ 230 (248)
T TIGR01697 154 GFPLTEGVYVM-VSGPSYETPAEI--RMLRILGADAVGMSTVPEVIVARHCGIKVLAVSLITNMAAGITDVPLSHEEVLA 230 (248)
T ss_pred CCceeeEEEEE-EECCCcCCHHHH--HHHHHcCCeEEccChHHHHHHHHHCCCcEEEEEEEEecCcccCCCCCCHHHHHH
Confidence 35688998 5 699999976654 45678899999999999999999999999999999999984 214556777755
Q ss_pred HHHHHHHHHHHHHHhc
Q 019168 321 ASINALRVAAEFIALI 336 (345)
Q Consensus 321 Aa~~aa~~~~~~l~~l 336 (345)
+++++++.+.++|+.+
T Consensus 231 ~~~~~~~~~~~ll~~~ 246 (248)
T TIGR01697 231 AAAAAAERFISLLEDI 246 (248)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5588889999998875
No 25
>TIGR03468 HpnG hopanoid-associated phosphorylase. The sequences in this family are members of the pfam01048 family of phosphorylases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene is adjacent to the genes PhnA-E and squalene-hopene cyclase (which would be HpnF) in Zymomonas mobilis and their association with hopene biosynthesis has been noted in the literature. Extending the gene symbol sequence, we suggest the symbol HpnG for the product of this gene. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species.
Probab=99.95 E-value=1.7e-27 Score=213.93 Aligned_cols=166 Identities=21% Similarity=0.270 Sum_probs=137.1
Q ss_pred EEEEEeCCCChhHHHHHHHHHHHhcCCcEEEEEeeecccCCCCccccEEEeccceeeCCcccccccccCCCCCccCccCC
Q 019168 101 DVIYVMTGEQTVNSGITVQILLDAFDIRGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAF 180 (345)
Q Consensus 101 ~Vvv~~~G~G~v~Aa~~~~~li~~f~~~~ii~~GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~ 180 (345)
+|+++.+|+|++||+.+++.|+ +++|+.+|++|+|||+++++++||+||++.+.+++.
T Consensus 21 ~v~~~~sGiG~~~aa~~~~~l~-~~~~~~vI~~G~aG~l~~~l~~Gdvvi~~~~~~~g~--------------------- 78 (212)
T TIGR03468 21 GLLVCLSGGGPERARAAAARLM-AAGAAGLVSFGTAGALDPALQPGDLVVPEEVRADGD--------------------- 78 (212)
T ss_pred CEEEEEcCCCHHHHHHHHHHHH-HcCCCEEEEEEecccCCCCCCCCCEEeehhheeCCC---------------------
Confidence 5889999999999999999985 789999999999999999999999999998765320
Q ss_pred CCCcchhhhhcccccCCcccccCCCCCCcccccCCChHHHHHHHhhhhhhhccccCCCCCCCCCCeEEEEeeeeehhhhc
Q 019168 181 NFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWLPVDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFL 260 (345)
Q Consensus 181 ~~p~~~~~~l~~~~y~~~~~~~~~~p~~~~~~~~~d~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~v~~G~ig~Sgd~~~ 260 (345)
.|+.|+.|.+...+..+ .+++++.|.+ +|+|.|+
T Consensus 79 -------------------------------~~~~d~~l~~~l~~~l~--------------~~~~~~~G~~-~t~d~~~ 112 (212)
T TIGR03468 79 -------------------------------RFPTDPAWRRRLLEALP--------------AGLRVHRGVL-AASDTVV 112 (212)
T ss_pred -------------------------------eecCCHHHHHHHHHHHH--------------hCCCeEEEEE-EEeCeEe
Confidence 13456666665544311 1357899999 8999999
Q ss_pred cCHHHHHHHHHHcCceEEecchhHHHHHHHhCCCCEEEEEeeccCCCCCCCccchhhH--HHHHHHHHHHHHHHHHh
Q 019168 261 DNAAYREFLFKQFNVSTVDEESAAIVMACLSNAVPSIVFRGVSDLGGGSDRLLSISRI--SLASINALRVAAEFIAL 335 (345)
Q Consensus 261 ~~~~~~~~L~~~~~~~~vdMEsaava~va~~~~ip~l~IR~ISD~a~~~~~~~~~~~~--~~Aa~~aa~~~~~~l~~ 335 (345)
.+++.+..+++.++++++|||+++++++|+.+++||++||+|||.+++. .+.++..+ +....+..+++..++++
T Consensus 113 ~~~~~~~~l~~~~ga~aVdMEsaava~va~~~gip~~~ir~ISD~a~~~-~~~~~~~~~~~~g~~~~~~ll~~l~~~ 188 (212)
T TIGR03468 113 STAAAKAALARATGAAAVDMESGAVAAVAAAAGLPFAVIRVISDPADRA-LPRAALDALRPDGSTALAALLRGLLRR 188 (212)
T ss_pred cCHHHHHHHHHhcCCcEEeChHHHHHHHHHHcCCCEEEEEEEeecCCCc-CchhHHHhcCcccCccHHHHHHHHHhC
Confidence 9998888898889999999999999999999999999999999999887 66556655 66666667777666654
No 26
>PRK08202 purine nucleoside phosphorylase; Provisional
Probab=99.95 E-value=1.3e-25 Score=208.69 Aligned_cols=234 Identities=13% Similarity=0.144 Sum_probs=162.6
Q ss_pred CCCEEEEEecCcHHHHH-HHHhhhcccCCC---CcccccC--CcEEEEEEECCEEEEEEeCCC----ChhHHHHHHHH-H
Q 019168 53 GGPYIGLVMAYPPEESA-LITSRLFVHNSR---IPFIDLA--GRRFNVGKIKNVDVIYVMTGE----QTVNSGITVQI-L 121 (345)
Q Consensus 53 ~~~~I~Ii~Al~~~E~~-~l~~~l~~~~~~---~~~~~~~--~~~~~~G~i~g~~Vvv~~~G~----G~v~Aa~~~~~-l 121 (345)
..|+||||+.+.-..+. .+......+..+ +|..... .-+|+.|+++|++|+++.+|+ |++++++.++. +
T Consensus 20 ~~~~i~iI~GsGl~~~~~~~~~~~~~~y~~ip~f~~~~v~gh~~~~~~G~l~g~~Vv~~~g~~H~yeG~~~~~~~a~i~~ 99 (272)
T PRK08202 20 FKPEIGLILGSGLGALADEIENAVVIPYADIPGFPVSTVEGHAGELVLGRLGGKPVLAMQGRFHYYEGYSMEAVTFPVRV 99 (272)
T ss_pred CCCCEEEEeCCchhHHHHHhcCcEEEecccCCCCCCCCCcCCCceEEEEEECCEEEEEEccCCcccCCCCHHHHHHHHHH
Confidence 45799999987433322 121111111211 1221121 357999999999999999998 99999998864 9
Q ss_pred HHhcCCcEEEEEeeecccCCCCccccEEEeccceeeCCcccccccccC-CCCCccCccCCCCCcchhhhhcccccCCccc
Q 019168 122 LDAFDIRGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSET-GQLPELDFGAFNFPVRGKNLLAKVEFTPSQL 200 (345)
Q Consensus 122 i~~f~~~~ii~~GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~-g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~ 200 (345)
+++|+++.||++|+|||+++++++||+||++..++++. ....+|+.. +..
T Consensus 100 l~~lGv~~II~tgaaGsL~~~l~~GDiVi~~d~i~~~~-~~~~~g~~~~~~~---------------------------- 150 (272)
T PRK08202 100 MKALGVETLIVTNAAGGLNPDFGPGDLMLISDHINLTG-RNPLIGPNDDEFG---------------------------- 150 (272)
T ss_pred HHHcCCCEEEEecccccCCCCCCCCCEEEEchhhhhCC-CCcccCCCcccCC----------------------------
Confidence 99999999999999999999999999999999998863 111111110 000
Q ss_pred ccCCCCCCcccccCCChHHHHHHHhhhhhhhccccCCCCCCCCCCeEEEEee-eeehhhhccCHHHHHHHHHHcCceEEe
Q 019168 201 YSAGKPMEELFWLPVDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLR-GSTADIFLDNAAYREFLFKQFNVSTVD 279 (345)
Q Consensus 201 ~~~~~p~~~~~~~~~d~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~v~~G~i-g~Sgd~~~~~~~~~~~L~~~~~~~~vd 279 (345)
|....+.++.|++|.+.+.+..+ +.+.++|.|++ .++||.|.+.++. ++.+++|++++|
T Consensus 151 -----~~~~~~~~~~d~~L~~~l~~~a~-------------~~~~~~~~G~y~~~~Gp~feT~aE~--~~~~~~Gad~Vg 210 (272)
T PRK08202 151 -----PRFPDMSDAYDPELRALAKKVAK-------------ELGIPLQEGVYVGVSGPSYETPAEI--RMLRTLGADAVG 210 (272)
T ss_pred -----CccCCCCcccCHHHHHHHHHHHH-------------HcCCceeeEEEEEeeCCCcCCHHHH--HHHHHcCCcEEe
Confidence 10001124679999988877521 01356788974 3699999998885 367788999999
Q ss_pred cchhHHHHHHHhCCCCEEEEEeeccCCCCC-CCccchhhHHHHHHHHHHHHHHHHHh
Q 019168 280 EESAAIVMACLSNAVPSIVFRGVSDLGGGS-DRLLSISRISLASINALRVAAEFIAL 335 (345)
Q Consensus 280 MEsaava~va~~~~ip~l~IR~ISD~a~~~-~~~~~~~~~~~Aa~~aa~~~~~~l~~ 335 (345)
||+++++++|+.+++||++||.|||++.+. ....+++++...++.++.-+.+++..
T Consensus 211 Me~~~ea~lA~~~gi~~~~i~~Vsd~a~~~~~~~~~~~ev~~~~~~~~~~~~~l~~~ 267 (272)
T PRK08202 211 MSTVPEVIVARHCGLKVLGISCITNLAAGISDEPLSHEEVLEVAERAAPKFGRLVKA 267 (272)
T ss_pred cChHHHHHHHHHCCCcEEEEEEEeccCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999763 14445666633334444444444444
No 27
>PRK08292 AMP nucleosidase; Provisional
Probab=99.94 E-value=4.5e-26 Score=221.70 Aligned_cols=199 Identities=17% Similarity=0.088 Sum_probs=136.7
Q ss_pred CCcE-EEEEEECCEEEEEEeCCCChhHHHHHHHHHHHhcCCcEEEEEeeecccCCCCccccEEEeccceeeCCccccccc
Q 019168 88 AGRR-FNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFK 166 (345)
Q Consensus 88 ~~~~-~~~G~i~g~~Vvv~~~G~G~v~Aa~~~~~li~~f~~~~ii~~GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g 166 (345)
.+.. |+..+.+|++|+++.+|||++||+++++.| ..++++.+|++|+|||+++++++||+||++.++++|. +...
T Consensus 263 ~~mp~y~l~~~~G~~VtvvssGIGpsnAA~ateeL-a~lgpd~iIriGtAGgL~~~lkiGDvVIA~aavr~DG---t~d~ 338 (489)
T PRK08292 263 PQMPAYHLIRADGQGITLVNIGVGPSNAKTITDHL-AVLRPHAWLMIGHCGGLRNSQRIGDYVLAHAYLRDDH---VLDA 338 (489)
T ss_pred cCCcceEeeccCCceEEEEEcCCCHHHHHHHHHHH-HHcCCCEEEEEEehhcCCCCCCCCCEEEECceEeCCc---cccc
Confidence 3444 445667889999999999999999888765 5679999999999999999999999999999999983 1000
Q ss_pred ccCCCCCccCccCCCCCcchhhhhcccccCCcccccCCCCCCcccccCCChHHHHHHHhhhhhhhccccCCCCCCCCCCe
Q 019168 167 SETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWLPVDSEWFDIATQLQDLELRRCLNDTYCLPERPK 246 (345)
Q Consensus 167 ~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p~~~~~~~~~d~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~ 246 (345)
+.++++ |... .+..+..|.+.++++.... ....+.+
T Consensus 339 ~~p~ev---------------------------------Pa~a--~~el~~aL~~aa~ev~~~~---------g~elg~~ 374 (489)
T PRK08292 339 VLPPWI---------------------------------PIPA--IAEVQVALEDAVAEVTGLP---------GEELKRR 374 (489)
T ss_pred cccccc---------------------------------CcCC--cHHHHHHHHHHHHHHhhhc---------ccccCCc
Confidence 111110 1100 1333445555544431000 0011457
Q ss_pred EEEEeeeeehhhhccCHHHHHHHHHHc---CceEEecchhHHHHHHHhCCCCEEEEEeeccCCCCCCCcc--chhhH-HH
Q 019168 247 VIVGLRGSTADIFLDNAAYREFLFKQF---NVSTVDEESAAIVMACLSNAVPSIVFRGVSDLGGGSDRLL--SISRI-SL 320 (345)
Q Consensus 247 v~~G~ig~Sgd~~~~~~~~~~~L~~~~---~~~~vdMEsaava~va~~~~ip~l~IR~ISD~a~~~~~~~--~~~~~-~~ 320 (345)
+|.|++ +|+|.|+.... .+.+.+++ +++|+|||+|+|+++|+.+++|+++||+|||..+.++.+. .-+.+ ..
T Consensus 375 ~h~G~V-~SgD~F~~e~~-~~~l~~~~~~~gAlAVEMESAALa~va~~~gVP~gaIr~VSD~~~~~E~k~~~~a~~~~~~ 452 (489)
T PRK08292 375 MRTGTV-VTTDDRNWELR-YSASALRFNQSRAVALDMESATIAANGYRFRVPYGTLLCVSDKPLHGEIKLPGQANAFYEG 452 (489)
T ss_pred eEEEEE-EecCcCCCcCc-hHHHHHHhhhcCCEEEehhHHHHHHHHHHhCCCEEEEEEEEecCCCCCccCcchhHHHHHH
Confidence 999999 89999864321 12344444 9999999999999999999999999999999998762211 11233 55
Q ss_pred HHHHHHHHHHHHHHhc
Q 019168 321 ASINALRVAAEFIALI 336 (345)
Q Consensus 321 Aa~~aa~~~~~~l~~l 336 (345)
...++..+..+-++.|
T Consensus 453 ~~~~hi~igi~A~~~L 468 (489)
T PRK08292 453 AVSQHLQIGIRAIELL 468 (489)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5556666666666654
No 28
>TIGR01721 AMN-like AMP nucleosidase, putative. The sequences in the clade represented by this model are most closely related to the AMP nucleosidase found in TIGR01717. These sequences are found only in Chlamydia and Porphyromonas and differ sufficiently from the characterized AMP nucleosidase to put some doubt on assignment of this name.
Probab=99.94 E-value=6.2e-25 Score=201.63 Aligned_cols=218 Identities=12% Similarity=0.073 Sum_probs=152.1
Q ss_pred CCCEEEEEecCcHHHHHHHHhhhcccCCCCcccccCCcEE-EEEEECCEEEEEEeCCCChhHHHHHHHHHHHhcCCcEEE
Q 019168 53 GGPYIGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRF-NVGKIKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVV 131 (345)
Q Consensus 53 ~~~~I~Ii~Al~~~E~~~l~~~l~~~~~~~~~~~~~~~~~-~~G~i~g~~Vvv~~~G~G~v~Aa~~~~~li~~f~~~~ii 131 (345)
..+.....+-+ .+.+..+.+.+..+. . .+..+ ..+. .|.+|.++.+|||.++|++.++.|+..++++.+|
T Consensus 21 ~~~~~~~~tn~-~~~i~~f~~~~~~~v-----~--~g~~~~~~~~-~~~~itv~~~GvG~psAai~~eeL~~~~G~k~iI 91 (266)
T TIGR01721 21 DFEPYLLLTNF-SYYLHVFAEHYGVPV-----V--EGSMFSAAHA-PAEGTSIIDFKLGSPGAALIXDLCSFLPHPKAAI 91 (266)
T ss_pred cccceeeeccH-HHHHHHHHHHcCCeE-----e--eceeccccCC-CCCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 35567777777 777777655543322 1 01000 0111 1889999999999999999999887788999999
Q ss_pred EEeeecccCCCCccccEEEeccceeeCCcccccccccCCCCCccCccCCCCCcchhhhhcccccCCcccccCCCCCCccc
Q 019168 132 HYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELF 211 (345)
Q Consensus 132 ~~GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p~~~~~ 211 (345)
++|+|||+++++++||+||++..+++|. +.++|.+++. |
T Consensus 92 riGtcG~L~~~i~iGDiVI~~aAir~dg---ts~~Y~p~~~---------------------------------p----- 130 (266)
T TIGR01721 92 MLGMCGGLRSHYQVGDYFVPVASIRGEG---TSDAYFPPEV---------------------------------P----- 130 (266)
T ss_pred EEEeccCCCCCCCCCCEEEEcceEeccC---chhhcCCccc---------------------------------C-----
Confidence 9999999999999999999999998873 3333322111 2
Q ss_pred ccCCChHHHHHHHhhhhhhhccccCCCCCCCCCCeEEEEeeeeehhh-hccC-HHHHHHHHHHcCceEEecchhHHHHHH
Q 019168 212 WLPVDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADI-FLDN-AAYREFLFKQFNVSTVDEESAAIVMAC 289 (345)
Q Consensus 212 ~~~~d~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~v~~G~ig~Sgd~-~~~~-~~~~~~L~~~~~~~~vdMEsaava~va 289 (345)
..+|+.+.+.+.+..+ ..+.+++.|.+ +|+|. |+.. .+.++.+ ++.+++++|||+|+++++|
T Consensus 131 -~~~d~~l~~~l~~a~~-------------~~g~~~~~G~v-~TtD~~F~e~~~~~~~~~-~~~ga~aVEMEsAAL~ava 194 (266)
T TIGR01721 131 -ALANFVVQKAITSALE-------------NKGKDYHIGIT-HTTNIRFWEFNKKFRDKL-YETKAQGVEMECATLFTAG 194 (266)
T ss_pred -CCCCHHHHHHHHHHHH-------------HcCCCeEEEEE-EcCCCcEeCCcHHHHHHH-HHcCCEEEehhHHHHHHHH
Confidence 2345666666655421 12457899999 99997 6653 3334444 4459999999999999999
Q ss_pred HhCCCCEEEEEeeccCCCCCCC---ccchhhH-HHHHHHHHHHHHHHHHhc
Q 019168 290 LSNAVPSIVFRGVSDLGGGSDR---LLSISRI-SLASINALRVAAEFIALI 336 (345)
Q Consensus 290 ~~~~ip~l~IR~ISD~a~~~~~---~~~~~~~-~~Aa~~aa~~~~~~l~~l 336 (345)
+.+++|+.+|+.|||....... ....+.+ ........++.++.+..|
T Consensus 195 ~~~~vp~~~il~VSD~~~~~e~~k~~~~~~~~~~~~~~~~~~~~lea~~~l 245 (266)
T TIGR01721 195 YRRNLPXGALLLISDLPLRPEGIKTKESDQLVTDTYTEEHILTGIEVLEIL 245 (266)
T ss_pred HHcCCCeEEEEEECCCCCCCCccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876521 1112223 555556666666666555
No 29
>TIGR01694 MTAP 5'-deoxy-5'-methylthioadenosine phosphorylase. In between the trusted and noise cutoffs are: 1) several archaeal sequences which appear to contain several residues characteristic of phosphorylases which act on guanosine or inosine (according to the crystal structure of MTAP and alignments). In any case, these residues are not conserved. 2) sequences from Mycobacterium tuberculosis and Streptomyces coelicolor which have better, although not perfect retention of the active site residues, but considering the general observation that bacteria utilize the MTA/SAH nucleotidase enzyme and a kinase to do this reaction, these have been excluded pending stronger evidence of their function, and 3) a sequence from Drosophila which appears to be a recent divergence (long branch in neighbor-joining trees) and lacks some of the conserved active site residues.
Probab=99.94 E-value=2.4e-25 Score=203.78 Aligned_cols=192 Identities=15% Similarity=0.121 Sum_probs=139.4
Q ss_pred cEEEEEEECCEEEEE-EeCCCCh------hHHHHHHHHHHHhcCCcEEEEEeeecccCCCCccccEEEeccceeeCCccc
Q 019168 90 RRFNVGKIKNVDVIY-VMTGEQT------VNSGITVQILLDAFDIRGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKW 162 (345)
Q Consensus 90 ~~~~~G~i~g~~Vvv-~~~G~G~------v~Aa~~~~~li~~f~~~~ii~~GiaGgl~~~~~lGDVvV~~~vv~~d~~~~ 162 (345)
.+|+.|+++|++|++ ..+|+|+ +|++..++.| ..++++.+|++|+|||+++++++||+||++..++++...-
T Consensus 33 ~~~~~G~~~g~~vv~~~~~G~g~~~~~~~vn~~a~~~~L-~~~Gv~~iI~~GsaG~l~~~l~~GDlVI~~~~i~~~~~~~ 111 (241)
T TIGR01694 33 APIVVGRVAGVDVAFLPRHGRGHDIPPHEVNYRANIWAL-KSLGVKYVISVNAVGSLREEYPPGDLVVPDQFIDRTSGRP 111 (241)
T ss_pred CCEEEEEECCEEEEEEeCCCCCCccChHHCCcHHHHHHH-HHcCCCEEEEeccccccCCCCCCCCEEEEhhHhhccCCCC
Confidence 579999999999997 6789999 8887777777 7899999999999999999999999999999987763100
Q ss_pred cc-ccccCCCCCccCccCCCCCcchhhhhcccccCCcccccCCCCCCcccccCCChHHHHHHHhhhhhhhccccCCCCCC
Q 019168 163 KA-FKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWLPVDSEWFDIATQLQDLELRRCLNDTYCL 241 (345)
Q Consensus 163 ~~-~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p~~~~~~~~~d~~l~~~a~~~~~~~l~~~~~~~~~~ 241 (345)
.. ++. +. ... .|. ....|+.|.+.+.+..+
T Consensus 112 ~~~~~~--~~-------------------------~~~-----~~~----~~~~d~~L~~~l~~~a~------------- 142 (241)
T TIGR01694 112 STFFDG--GK-------------------------VVH-----VDF----GDPYCEDLRQRLIESLR------------- 142 (241)
T ss_pred CccCCC--Cc-------------------------cCC-----CCC----CCCCCHHHHHHHHHHHH-------------
Confidence 00 000 00 000 010 12358888887776521
Q ss_pred CCCCeEE-EEeeee--ehhhhccCHHHHHHHHHHcCceEEecchhHHHHHHHhCCCCEEEEEeeccCCCCC-CCccchhh
Q 019168 242 PERPKVI-VGLRGS--TADIFLDNAAYREFLFKQFNVSTVDEESAAIVMACLSNAVPSIVFRGVSDLGGGS-DRLLSISR 317 (345)
Q Consensus 242 ~~~~~v~-~G~ig~--Sgd~~~~~~~~~~~L~~~~~~~~vdMEsaava~va~~~~ip~l~IR~ISD~a~~~-~~~~~~~~ 317 (345)
+.+.++| .|.+ + +||.|...++ .+.+ +.+|++++|||+++++++|+.+|+|+++||.|||+++.. +...++++
T Consensus 143 ~~~~~~~~~G~~-~~~~G~~f~t~~e-~~~~-~~~Ga~aVeME~aa~~~vA~~~gv~~~~i~~Vsd~a~~~~~~~~~~~e 219 (241)
T TIGR01694 143 RLGLTVHDGGTY-VCTEGPRFSTRAE-SRMF-KSWGADIVGMTGVPEAVLARELELCYATLALVTDYDCWISADHVTAEE 219 (241)
T ss_pred HcCCcEEeceEE-EeCcCCCcCCHHH-HHHH-HHcCCeEEeccHHHHHHHHHHCCCCEEEEEEEeeccccCCCCCCCHHH
Confidence 0134677 6887 7 7789976544 4555 568999999999999999999999999999999988742 14566777
Q ss_pred H-HHHHHHHHHHHHHHHHh
Q 019168 318 I-SLASINALRVAAEFIAL 335 (345)
Q Consensus 318 ~-~~Aa~~aa~~~~~~l~~ 335 (345)
+ ..++++ +..+.+++..
T Consensus 220 ~~~~~~~~-~~~~~~~~~~ 237 (241)
T TIGR01694 220 VEEVMGEN-VEKAKRILLE 237 (241)
T ss_pred HHHHHHHH-HHHHHHHHHH
Confidence 7 555444 4444444443
No 30
>COG2820 Udp Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=99.94 E-value=3.4e-25 Score=195.50 Aligned_cols=207 Identities=17% Similarity=0.168 Sum_probs=156.7
Q ss_pred CCCccccccccccCCCCEEEEEecCcHHHHHHHHhhhcccCCCCcccccCCcEEEEEEECCEEEEEEeCCCChhHHHHHH
Q 019168 39 NHPMHGIVDRVNEIGGPYIGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGITV 118 (345)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~I~Ii~Al~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~G~i~g~~Vvv~~~G~G~v~Aa~~~ 118 (345)
..+.|-.+++.+ ..+.+|++. ||++...+.++|++++. ..+...++-|+|+++|++|+++.||||.++||+++
T Consensus 4 ~~~~Hl~~~~~d---~~~~vilpG-dP~R~~~iA~lld~~~~---va~~Ref~~~~g~~~g~~v~v~StGIGgPSaaIAv 76 (248)
T COG2820 4 SVQYHLGLAKGD---VATLVILPG-DPERVEKIAKLLDNPVL---VASNREFRTYTGTYNGKPVTVCSTGIGGPSAAIAV 76 (248)
T ss_pred ccceeeeccccC---ccceEEecC-CHHHHHHHHHHhccchh---hhhccceEEEEEEEcCeEEEEEecCCCCchHHHHH
Confidence 345566666645 346788888 69999999998887762 34445567799999999999999999999999999
Q ss_pred HHHHHhcCCcEEEEEeeecccCCCCccccEEEeccceeeCCcccccccccCCCCCccCccCCCCCcchhhhhcccccCCc
Q 019168 119 QILLDAFDIRGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPS 198 (345)
Q Consensus 119 ~~li~~f~~~~ii~~GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~ 198 (345)
++|... +.+.+|.+|++||+.+++++||+||++..+..|. +. ..|.+.
T Consensus 77 EEL~~l-Ga~tfiRVGT~Galq~~i~~Gdvvi~tgAvr~dG---~s----------------------------~~y~~~ 124 (248)
T COG2820 77 EELARL-GAKTFIRVGTTGALQPDINVGDVVVATGAVRLDG---AS----------------------------KHYAPE 124 (248)
T ss_pred HHHHhc-CCeEEEEeeccccccCCCCCCCEEEecccccccc---cc----------------------------ccccCC
Confidence 999965 9999999999999999999999999999998763 11 122221
Q ss_pred ccccCCCCCCcccccCCChHHHHHHHhhhhhhhccccCCCCCCCCCCeEEEEeeeeehhhhc-----------cCHHHHH
Q 019168 199 QLYSAGKPMEELFWLPVDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFL-----------DNAAYRE 267 (345)
Q Consensus 199 ~~~~~~~p~~~~~~~~~d~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~v~~G~ig~Sgd~~~-----------~~~~~~~ 267 (345)
+. |. .+|..+.+...+..+ ..+.++|+|.+ +|+|.|+ ...+..-
T Consensus 125 ~~-----PA------v~d~~~t~al~~aa~-------------~~~~~~~vG~v-~S~D~FYgQ~r~~~~~~~~e~~~~~ 179 (248)
T COG2820 125 EF-----PA------VADFELTNALVEAAE-------------SLGVTVHVGVV-ASSDAFYGQERYYSGFVTPEFKESW 179 (248)
T ss_pred CC-----CC------CCCHHHHHHHHHHHH-------------hcCCceEEEEE-eecccccccccccccccCcchHHHH
Confidence 11 21 235555554444321 11358999999 8999999 3333222
Q ss_pred HHHHHcCceEEecchhHHHHHHHhCCCCEEEEEe-eccCCCCC
Q 019168 268 FLFKQFNVSTVDEESAAIVMACLSNAVPSIVFRG-VSDLGGGS 309 (345)
Q Consensus 268 ~L~~~~~~~~vdMEsaava~va~~~~ip~l~IR~-ISD~a~~~ 309 (345)
+-++..|+.++|||+|+++.+|+..|++...+-+ |+|....+
T Consensus 180 ~~W~~~gv~~~EMEsAtlftl~~~~G~rag~V~~vi~n~~~~e 222 (248)
T COG2820 180 EEWQDLGVLNIEMESATLFTLGSLRGLRAGAVLGVIANRTQGE 222 (248)
T ss_pred HHHHHcCchhhHHHHHHHHHHHHHcCcccccEEEEEccccccc
Confidence 2234459999999999999999999999877776 89988766
No 31
>PRK07077 hypothetical protein; Provisional
Probab=99.93 E-value=8.2e-25 Score=198.11 Aligned_cols=162 Identities=20% Similarity=0.191 Sum_probs=127.1
Q ss_pred CCEEEEEecCcHHHHHHHHhhhcccCCCCcccccCCcEEEEEEECCEEEEEEeCCCChhHHHHHHHHHHHhcCCcEEEEE
Q 019168 54 GPYIGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVHY 133 (345)
Q Consensus 54 ~~~I~Ii~Al~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~G~i~g~~Vvv~~~G~G~v~Aa~~~~~li~~f~~~~ii~~ 133 (345)
.+.|+|++++ +.|.. +... .+ +-++..|.|...++...+ ++...+++.||++
T Consensus 9 ~~~vl~vt~~-~~ea~-i~~g-----------------------~~--~~~~~~g~~~~~~~a~~~-~~~~~~~~~vIs~ 60 (238)
T PRK07077 9 PRPVLAVTGM-AFEAR-IAAG-----------------------PG--VEVVCAARADRLERALLA-AFDARGCAGIVSF 60 (238)
T ss_pred CccEEEEEec-HHHHH-HhcC-----------------------CC--ceEEecCCCHHHHHHHHH-HHHhcCCCEEEEE
Confidence 4579999999 77776 3222 11 223445777766665555 6666799999999
Q ss_pred eeecccCCCCccccEEEeccceeeCCcccccccccCCCCCccCccCCCCCcchhhhhcccccCCcccccCCCCCCccccc
Q 019168 134 GTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWL 213 (345)
Q Consensus 134 GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p~~~~~~~ 213 (345)
|+|||+++++++||+||++++++++. +|
T Consensus 61 G~AGgL~p~l~vGDvVva~~v~~~~g----------------------------------------------------~~ 88 (238)
T PRK07077 61 GVAGGLDPDLAPGDLVVATAVDAPFG----------------------------------------------------RV 88 (238)
T ss_pred EeccccCCCCCCCcEEEEeeeecCCC----------------------------------------------------cC
Confidence 99999999999999999998875431 13
Q ss_pred CCChHHHHHHHhhhhhhhccccCCCCCCCCCCeEEEEeeeeehhhhccCHHHHHHHHHHcCceEEecchhHHHHHHHhCC
Q 019168 214 PVDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQFNVSTVDEESAAIVMACLSNA 293 (345)
Q Consensus 214 ~~d~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~v~~G~ig~Sgd~~~~~~~~~~~L~~~~~~~~vdMEsaava~va~~~~ 293 (345)
+.|+.|.+...+..+. . ....+++.|.+ +|+|.|+.+.+.++.|++.++++++|||+++++++|+.++
T Consensus 89 ~~d~~l~~~l~~~l~~--~---------~~~~~v~~G~i-~T~D~~v~~~~~k~~L~~~~gA~aVDMEsaAvA~va~~~g 156 (238)
T PRK07077 89 DTDARWSARLAAALEL--T---------PVARRVVRGGL-AGVEAPVVGAAAKAALHRATGALAVDMESHIAAAFAAARG 156 (238)
T ss_pred cCCHHHHHHHHHHHHh--c---------cCCCceEEEEE-EecCeeecCHHHHHHHHHhCCCEEEehhHHHHHHHHHHcC
Confidence 4577777665543110 0 01347999999 9999999999999999999999999999999999999999
Q ss_pred CCEEEEEeeccCCC
Q 019168 294 VPSIVFRGVSDLGG 307 (345)
Q Consensus 294 ip~l~IR~ISD~a~ 307 (345)
+||++||+|||.++
T Consensus 157 iPf~viR~ISD~a~ 170 (238)
T PRK07077 157 LPFAACRVIVDPAW 170 (238)
T ss_pred CCEEEEEEEEeccC
Confidence 99999999999999
No 32
>TIGR01717 AMP-nucleosdse AMP nucleosidase. This model represents the AMP nucleosidase from proteobacteria but also including a sequence from Corynebacterium, a gram-positive organism. The species from E. coli has been most well studied.
Probab=99.93 E-value=1.9e-24 Score=209.77 Aligned_cols=198 Identities=17% Similarity=0.077 Sum_probs=136.8
Q ss_pred cCCcE-EEEEEECCEEEEEEeCCCChhHHHHHHHHHHHhcCCcEEEEEeeecccCCCCccccEEEeccceeeCCcccccc
Q 019168 87 LAGRR-FNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAF 165 (345)
Q Consensus 87 ~~~~~-~~~G~i~g~~Vvv~~~G~G~v~Aa~~~~~li~~f~~~~ii~~GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~ 165 (345)
..... |+.++.+|++|+++.+|||++||+.+++.| ..++++.+|++|+|||+++++++||+||++.++++|. +..
T Consensus 250 ~~~mp~Y~l~~~~g~~ItvvstGIGpsnAaaiteeL-a~lgp~~iI~iGscGgL~~~ikiGDlVIataAvR~DG---tsd 325 (477)
T TIGR01717 250 RHQMPAYHLITADGDGITLVNIGVGPSNAKTITDHL-AVLRPHAWLMIGHCGGLRESQRIGDYVLAHAYLREDH---VLD 325 (477)
T ss_pred cCCCceEEEEeeCCceEEEEECCCCHHHHHHHHHHH-HHcCCCEEEEEEccccCCCCCCCCCEEEEeeEEecCc---chh
Confidence 34444 445788999999999999999998887765 5689999999999999999999999999999999983 111
Q ss_pred cccCCCCCccCccCCCCCcchhhhhcccccCCcccccCCCCCCcccccCCChHHHHHHHhh-hhh-hhccccCCCCCCCC
Q 019168 166 KSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWLPVDSEWFDIATQL-QDL-ELRRCLNDTYCLPE 243 (345)
Q Consensus 166 g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p~~~~~~~~~d~~l~~~a~~~-~~~-~l~~~~~~~~~~~~ 243 (345)
.+. | ++.| .+++..+.....+. .++ ..+ +...
T Consensus 326 ~yl--------------p-------------------~~~P------apa~~~l~~aL~~Aa~~~~g~~-------g~el 359 (477)
T TIGR01717 326 AVL--------------P-------------------PDIP------IPAIAEVQRALEDAVAEVTGRP-------GEEL 359 (477)
T ss_pred hhc--------------c-------------------cccC------CCCcHHHHHHHHHHHHHhhccc-------cccc
Confidence 000 0 0001 23444444433332 111 000 0012
Q ss_pred CCeEEEEeeeeehhhhc---cCHHHHHHHHHHcCceEEecchhHHHHHHHhCCCCEEEEEeeccCCCCCCCcc--chhhH
Q 019168 244 RPKVIVGLRGSTADIFL---DNAAYREFLFKQFNVSTVDEESAAIVMACLSNAVPSIVFRGVSDLGGGSDRLL--SISRI 318 (345)
Q Consensus 244 ~~~v~~G~ig~Sgd~~~---~~~~~~~~L~~~~~~~~vdMEsaava~va~~~~ip~l~IR~ISD~a~~~~~~~--~~~~~ 318 (345)
+.++|.|++ +|+|.|+ .+.+..+++ +..+++++|||+|+++++|+.+++|+.+||+|||.....+.+. +-+.+
T Consensus 360 ~~~~h~G~V-~StD~F~~el~~~~~~~~l-~~~gAlAVEMESAALaava~~~gVP~gaLr~VSD~~l~~Eik~~~~a~~~ 437 (477)
T TIGR01717 360 KRRLRTGTV-LTTDDRNWELRYSASALRL-NLSRAIAVDMESATIAAQGYRFRVPYGTLLCVSDKPLHGEIKLPGQANAF 437 (477)
T ss_pred CCceEEEEE-EecCcCcccCCCHHHHHHH-HhCCCEEEehhHHHHHHHHHHhCCCEEEEEEEEEcCCCCCccCcchhHHH
Confidence 347999999 9999874 455544444 3449999999999999999999999999999999988762211 11233
Q ss_pred -HHHHHHHHHHHHHHHHhc
Q 019168 319 -SLASINALRVAAEFIALI 336 (345)
Q Consensus 319 -~~Aa~~aa~~~~~~l~~l 336 (345)
.....++..+..+-++.|
T Consensus 438 ~~~~~~~hi~igi~al~~L 456 (477)
T TIGR01717 438 YEGAVSQHLQIGIRAIDLL 456 (477)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 555555566665555554
No 33
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=99.92 E-value=2e-23 Score=181.65 Aligned_cols=224 Identities=17% Similarity=0.142 Sum_probs=169.7
Q ss_pred CCCCEEEEEecCcHHHHHHHHhhhcccCCCCcccccCCcEEEEEEECCEEEEEEeCCCChhHHHHHHHHHHHhcCCcEEE
Q 019168 52 IGGPYIGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVV 131 (345)
Q Consensus 52 ~~~~~I~Ii~Al~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~G~i~g~~Vvv~~~G~G~v~Aa~~~~~li~~f~~~~ii 131 (345)
.+.+.+.++.+ ||.+.+.+.+.|.+.-. ...+..+.--++|+++|++|.+.-+|||.++..+.+.+|+..|+++.+|
T Consensus 11 gdia~~VLmPG-DPlRAK~iAetfLe~~~--~vnevR~mlgfTGtYKGk~iSvmg~GmGipS~sIY~~ELi~~y~Vk~iI 87 (236)
T COG0813 11 GDIAEVVLMPG-DPLRAKYIAETFLENAV--CVNEVRGMLGFTGTYKGKKISVMGHGMGIPSISIYSRELITDYGVKKII 87 (236)
T ss_pred CccCceeecCC-CCchHHHHHHHHHhhhh--hhhhhcchhcccceecCcEEEEEEecCCCccHHHHHHHHHHHhCcceEE
Confidence 45788899999 59999998887655432 1345566667899999999999999999999999999999999999999
Q ss_pred EEeeecccCCCCccccEEEeccceeeCCcccccccccCCCCCccCccCCCCCcchhhhhcccccCCcccccCCCCCCccc
Q 019168 132 HYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELF 211 (345)
Q Consensus 132 ~~GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p~~~~~ 211 (345)
.+|+||++++++.++||||+....- |. +.... . +. |. .+
T Consensus 88 RvGt~Gal~~~v~l~DvVia~~A~t-ds-~~~~~-----~-----------------------f~---------~~--df 126 (236)
T COG0813 88 RVGTCGALSEDVKLRDVVIAQGAST-DS-NVNRI-----R-----------------------FK---------PH--DF 126 (236)
T ss_pred EEEccccccCCcccceEEEeccccC-cc-hhhhc-----c-----------------------cC---------cc--cc
Confidence 9999999999999999999987643 21 11100 0 00 10 00
Q ss_pred ccCCChHHHHHHHhhhhhhhccccCCCCCCCCCCeEEEEeeeeehhhhccCHHHHHHHHHHcCceEEecchhHHHHHHHh
Q 019168 212 WLPVDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQFNVSTVDEESAAIVMACLS 291 (345)
Q Consensus 212 ~~~~d~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~v~~G~ig~Sgd~~~~~~~~~~~L~~~~~~~~vdMEsaava~va~~ 291 (345)
-..+|.+|++.|.+..+ +.+.++|.|.+ .|+|.|+.+......+.+++|+++||||++|++.+|..
T Consensus 127 ~~~ad~~Ll~~a~~~A~-------------e~gi~~hvgnv-~ssD~FY~~~~~~~~~~~~~gvlaVeMEaaalY~~A~~ 192 (236)
T COG0813 127 APIADFELLEKAYETAK-------------ELGIDTHVGNV-FSSDLFYNPDTEMFDLMAKYGVLAVEMEAAALYAVAAE 192 (236)
T ss_pred cccCCHHHHHHHHHHHH-------------HhCCceeeeee-eeeecccCCCHHHHHHHHHhCCcEEEeeHHHHHHHHHH
Confidence 13468899998887632 12578999999 89999998766666777889999999999999999999
Q ss_pred CCCCEEEEEeeccCCCCCCCccchhhHHHHHHHHHHHHHHHHH
Q 019168 292 NAVPSIVFRGVSDLGGGSDRLLSISRISLASINALRVAAEFIA 334 (345)
Q Consensus 292 ~~ip~l~IR~ISD~a~~~~~~~~~~~~~~Aa~~aa~~~~~~l~ 334 (345)
+|...+.|..|||..-.+ ......+-..+-..-.+++++++.
T Consensus 193 ~~~~Al~ilTVSD~l~t~-E~~s~eeRq~tF~~M~~iaLe~~~ 234 (236)
T COG0813 193 YGKKALTILTVSDHLVTG-EETSAEERQNTFNDMIEIALESAI 234 (236)
T ss_pred hCcceEEEEEeeccccCc-ccCCHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998665 221121113344445555555543
No 34
>TIGR01699 XAPA xanthosine phosphorylase. (TIGR01698, TIGR01700).
Probab=99.90 E-value=7.7e-23 Score=186.64 Aligned_cols=196 Identities=15% Similarity=0.150 Sum_probs=143.4
Q ss_pred cEEEEEEECCEEEEEEeCCCChhHHHHHHHHHH------HhcCCcEEEEEeeecccCCCCccccEEEeccceeeCCcccc
Q 019168 90 RRFNVGKIKNVDVIYVMTGEQTVNSGITVQILL------DAFDIRGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWK 163 (345)
Q Consensus 90 ~~~~~G~i~g~~Vvv~~~G~G~v~Aa~~~~~li------~~f~~~~ii~~GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~ 163 (345)
-+|+.|+++|++|++ .+|.|+++++..++.+. +.++++.||++|.+||+++++++||+||++..+++-. ..
T Consensus 41 g~l~~G~l~g~~Vv~-~~Gr~h~y~g~~~~~~~~~i~~l~~lGv~~iI~t~aaG~l~~~l~~Gdlvi~~d~i~~t~--~~ 117 (248)
T TIGR01699 41 GELVLGHLQGVPVVC-MKGRGHFYEGRGMTIMTDAIRTFKLLGCELLFCTNAAGSLRPEVGAGSLVALKDHINTMP--GT 117 (248)
T ss_pred ceEEEEEECCEEEEE-EeCCCcccCCcchhhhcchHHHHHHcCCCEEEEecceeccCCCCCCCCEECHHHHhhcCC--CC
Confidence 469999999999999 68999999888888877 8899999999999999999999999999999987731 10
Q ss_pred cccccCCCCCccCccCCCCCcchhhhhcccccCCcccccCCCCCCcccccCCChHHHHHHHhhhhhhhccccCCCCCCCC
Q 019168 164 AFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWLPVDSEWFDIATQLQDLELRRCLNDTYCLPE 243 (345)
Q Consensus 164 ~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p~~~~~~~~~d~~l~~~a~~~~~~~l~~~~~~~~~~~~ 243 (345)
|.. .++.+. .+.-.+ ++ .-+.|++|.+.+.+..+ ..
T Consensus 118 ---------p~~---~~~~~~-----~g~~~~----------~~----~~~yd~~Lr~~~~~~a~-------------~~ 153 (248)
T TIGR01699 118 ---------PMV---GLNDDR-----FGERFF----------SL----ANAYDAEYRALLQKVAK-------------EE 153 (248)
T ss_pred ---------Ccc---CCCccc-----CCCCCC----------CC----CCccCHHHHHHHHHHHH-------------Hc
Confidence 000 000000 000000 00 11358999988887631 01
Q ss_pred CCeEEEEeeeee--hhhhccCHHHHHHHHHHcCceEEecchhHHHHHHHhCCCCEEEEEeeccCCCCCC-CccchhhHHH
Q 019168 244 RPKVIVGLRGST--ADIFLDNAAYREFLFKQFNVSTVDEESAAIVMACLSNAVPSIVFRGVSDLGGGSD-RLLSISRISL 320 (345)
Q Consensus 244 ~~~v~~G~ig~S--gd~~~~~~~~~~~L~~~~~~~~vdMEsaava~va~~~~ip~l~IR~ISD~a~~~~-~~~~~~~~~~ 320 (345)
+.+++.|++ ++ ||.|.+.+|. ++.+++|+++++||+++.+.+|+.+++||++||.|||++.+.. ...+.++...
T Consensus 154 ~~~~~~Gvy-~~~~GP~FeT~AE~--r~~~~~Gad~VgMs~vpEa~~A~~~g~~~~~i~~Vtn~a~g~~~~~lt~~ev~~ 230 (248)
T TIGR01699 154 GFPLTEGVF-VSYPGPNFETAAEI--RMMQIIGGDVVGMSVVPEVISARHCDLKVVAVSAITNMAEGLSDVKLSHAQTLA 230 (248)
T ss_pred CCceeeEEE-EEeeCCCcCCHHHH--HHHHHcCCcEEccchhHHHHHHHHCCCcEEEEEEEeecCcCcCCCCCCHHHHHH
Confidence 346889998 78 9999998886 5777899999999999999999999999999999999997641 2223334434
Q ss_pred HHHHHHHHHHHHHHh
Q 019168 321 ASINALRVAAEFIAL 335 (345)
Q Consensus 321 Aa~~aa~~~~~~l~~ 335 (345)
.++.+.+-+.++|..
T Consensus 231 ~~~~~~~~~~~ll~~ 245 (248)
T TIGR01699 231 AAELSKQNFINLICG 245 (248)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444445555555544
No 35
>PRK09136 5'-methylthioadenosine phosphorylase; Validated
Probab=99.88 E-value=3.7e-21 Score=175.69 Aligned_cols=223 Identities=12% Similarity=0.101 Sum_probs=146.7
Q ss_pred EEEEecCcHHHHHHHHhhhcccCCCCcccccCCcEEEEEEECCEEEE-EEeCCCC------hhHH--HHHHHHHHHhcCC
Q 019168 57 IGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVI-YVMTGEQ------TVNS--GITVQILLDAFDI 127 (345)
Q Consensus 57 I~Ii~Al~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~G~i~g~~Vv-v~~~G~G------~v~A--a~~~~~li~~f~~ 127 (345)
||||+.+.-..+..+... .......|+-+ .+.+++.|+++|++|+ +.++|+| ++|. ++.+ ++.+++
T Consensus 2 igiI~Gsgl~~~~~~~~~-~~~~~~tpyg~-~~~~l~~G~l~g~~Vv~l~RhG~~h~~~~~~V~~~A~i~a---l~~lGv 76 (245)
T PRK09136 2 LAIIGGTGLTQLAGLDIV-QRQVVRTPYGA-PSGPLTFGTLAGREVVFLARHGHGHTIPPHKVNYRANIWA---LKQAGA 76 (245)
T ss_pred EEEEeccccchhhhcccc-ceeEEEcCCCC-CcccEEEEEECCEEEEEEecCCCCCCCChHHcCcHHHHHH---HHHcCC
Confidence 789987743333322111 01111123221 2568999999999999 5567988 6773 4443 678899
Q ss_pred cEEEEEeeecccCCCCccccEEEeccceeeCCcc-cccccccCCCCCccCccCCCCCcchhhhhcccccCCcccccCCCC
Q 019168 128 RGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWK-WKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKP 206 (345)
Q Consensus 128 ~~ii~~GiaGgl~~~~~lGDVvV~~~vv~~d~~~-~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p 206 (345)
+.||.+|.|||+++++++||+||++..++++... .+.|+.+.+.. |
T Consensus 77 ~~ii~t~aaG~l~~~l~~Gdlvi~~d~i~~~~~~p~t~~~~~~~~~---------------------------------~ 123 (245)
T PRK09136 77 TRVLAVNTVGGIHADMGPGTLVVPDQIIDYTWGRKSTFFEGDGEEV---------------------------------T 123 (245)
T ss_pred CEEEEecccccCCCCCCCCCEEEEHHHhhccCCCCCCCCCCCCCCC---------------------------------C
Confidence 9999999999999999999999999999876311 12111110000 1
Q ss_pred CCcccccCCChHHHHHHHhhhhhhhccccCCCCCCCCCCeEE-EEeeee--ehhhhccCHHHHHHHHHHcCceEEecchh
Q 019168 207 MEELFWLPVDSEWFDIATQLQDLELRRCLNDTYCLPERPKVI-VGLRGS--TADIFLDNAAYREFLFKQFNVSTVDEESA 283 (345)
Q Consensus 207 ~~~~~~~~~d~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~v~-~G~ig~--Sgd~~~~~~~~~~~L~~~~~~~~vdMEsa 283 (345)
..+. ..+.|++|.+.+.+..+ ..+.++| .|++ + +|+.| .++++...++ ++|+++|+||++
T Consensus 124 ~~~~-~~~~d~~L~~~~~~~a~-------------~~~~~~~~~Gvy-~~~~GP~f-eT~AE~r~lr-~~Gad~VgMs~~ 186 (245)
T PRK09136 124 HIDF-THPYSPMLRQRLLAAAR-------------AAGVSLVDGGVY-AATQGPRL-ETAAEIARLE-RDGCDLVGMTGM 186 (245)
T ss_pred CCCC-cccCCHHHHHHHHHHHH-------------HcCCcEEeccEE-EEeeCCCc-CCHHHHHHHH-HcCCCEEcCcHH
Confidence 0011 24568999988777521 0134566 4776 5 99999 6677777776 489999999999
Q ss_pred HHHHHHHhCCCCEEEEEeeccCCCCCCC-c-cchhhH-HHHHHHHHHHHHHHHHh
Q 019168 284 AIVMACLSNAVPSIVFRGVSDLGGGSDR-L-LSISRI-SLASINALRVAAEFIAL 335 (345)
Q Consensus 284 ava~va~~~~ip~l~IR~ISD~a~~~~~-~-~~~~~~-~~Aa~~aa~~~~~~l~~ 335 (345)
+.+.+|+.+++||++|+.|||++..... . .+.++. +.+.++ .+-+.+++..
T Consensus 187 pEa~~A~~~gi~~~~i~~Vtn~a~g~~~~~~~~~~ev~~~~~~~-~~~~~~l~~~ 240 (245)
T PRK09136 187 PEAALARELGLPYACLALVANWAAGRGDSAEITMAEIEAALDAA-MGRVRELLER 240 (245)
T ss_pred HHHHHHHHcCCCEEEEEEEeecccCcCCCCCCCHHHHHHHHHHH-HHHHHHHHHH
Confidence 9999999999999999999999966411 1 344555 444333 3334444433
No 36
>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed
Probab=99.43 E-value=2.6e-11 Score=112.26 Aligned_cols=232 Identities=15% Similarity=0.169 Sum_probs=147.0
Q ss_pred CCCCEEEEEecCcHHHHHHHHhhhcccCCCCcccccCCcEEEEEEECCEEEEEEe-CCCC------hhHHHHHHHHHHHh
Q 019168 52 IGGPYIGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVM-TGEQ------TVNSGITVQILLDA 124 (345)
Q Consensus 52 ~~~~~I~Ii~Al~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~G~i~g~~Vvv~~-~G~G------~v~Aa~~~~~li~~ 124 (345)
+..|.||||+.+.-.++..+........ ..|+-+ ..-.+..|+++|++|+++. .|-+ .+|.. +--+.++.
T Consensus 5 ~~~~~igiIgGSGl~~~~~l~~~~~~~~-~tpyg~-p~~~l~~g~l~g~~v~~l~RhGr~H~y~~~~i~~~-a~i~aLk~ 81 (267)
T PRK08564 5 NEKASIGIIGGSGLYDPGIFENSKEVKV-YTPYGE-PSDNIIIGEIEGVEVAFLPRHGRGHRIPPHKINYR-ANIWALKE 81 (267)
T ss_pred CCCceEEEEecCCCCCCcccccceeeeE-EcCCCC-CccCEEEEEECCEEEEEEeCCCCCcccCCccCcch-HHHHHHHH
Confidence 3468999999874322233333222211 122221 1346788999999999883 4432 23432 22345567
Q ss_pred cCCcEEEEEeeecccCCCCccccEEEeccceeeCCcccccccccCCCCCccCccCCCCCcchhhhhcccccCCcccccCC
Q 019168 125 FDIRGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAG 204 (345)
Q Consensus 125 f~~~~ii~~GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~ 204 (345)
.+++.||.+|.|||+++++++||+||++..+.... ...+ .+ +..| .+. .
T Consensus 82 LGvk~iI~tnavGsl~~~~~pGDlVv~~D~I~~tg--~~p~----------t~--~~g~--------~~~--~------- 130 (267)
T PRK08564 82 LGVEWVIAVSAVGSLREDYKPGDFVIPDQFIDMTK--KREY----------TF--YDGP--------VVA--H------- 130 (267)
T ss_pred CCCcEEEEeccccccCCCCCCCCEEeehhhhccCC--CCCc----------cc--CCCC--------ccc--c-------
Confidence 79999999999999999999999999999875532 1100 00 0000 000 0
Q ss_pred CCCCcccccCCChHHHHHHHhhh-hhhhccccCCCCCCCCCCeEE-EEee-eeehhhhccCHHHHHHHHHHc-CceEEec
Q 019168 205 KPMEELFWLPVDSEWFDIATQLQ-DLELRRCLNDTYCLPERPKVI-VGLR-GSTADIFLDNAAYREFLFKQF-NVSTVDE 280 (345)
Q Consensus 205 ~p~~~~~~~~~d~~l~~~a~~~~-~~~l~~~~~~~~~~~~~~~v~-~G~i-g~Sgd~~~~~~~~~~~L~~~~-~~~~vdM 280 (345)
.++. -+-|+.|.+.+.+.. +. +.++| .|+. ...|..|-+-+|.| +.+.+ |+++|-|
T Consensus 131 ~~~~----~~y~~~Lr~~l~~aA~~~--------------g~~~~~~GvY~~~~GP~fET~AEir--~~r~~~GaD~VGM 190 (267)
T PRK08564 131 VSMA----DPFCPELRKIIIETAKEL--------------GIRTHEKGTYICIEGPRFSTRAESR--MWREVFKADIIGM 190 (267)
T ss_pred CCCC----cccCHHHHHHHHHHHHHc--------------CCceecceEEEEeeCCCcCCHHHHH--HHHHccCCCEecc
Confidence 0111 123778888777652 21 23455 3542 25888887766644 44565 9999999
Q ss_pred chhHHHHHHHhCCCCEEEEEeeccCCCCCCCccchhhH----HHHHHHHHHHHHHHHHhcc
Q 019168 281 ESAAIVMACLSNAVPSIVFRGVSDLGGGSDRLLSISRI----SLASINALRVAAEFIALID 337 (345)
Q Consensus 281 Esaava~va~~~~ip~l~IR~ISD~a~~~~~~~~~~~~----~~Aa~~aa~~~~~~l~~l~ 337 (345)
-++.-+.+|+..+++++.|-.|+|++...+...+.++. +.++.+..+++..+|+.++
T Consensus 191 S~vpEvilAre~g~~~~~is~VtN~a~g~~~~~t~~ev~~~~~~~~~~~~~ll~~~i~~l~ 251 (267)
T PRK08564 191 TLVPEVNLACELGMCYATIAMVTDYDVWAEKPVTAEEVTRVMAENTEKAKKLLYEAIPRIP 251 (267)
T ss_pred CccHHHHHHHHcCCceEEEEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999998664223233333 5556667778888888775
No 37
>PRK08931 5'-methylthioadenosine phosphorylase; Provisional
Probab=99.41 E-value=2.8e-11 Score=112.72 Aligned_cols=232 Identities=12% Similarity=0.086 Sum_probs=145.1
Q ss_pred CCEEEEEecCcHHHHHHHHhhhcccCCCCcccccCCcEEEEEEECCEEEEEEe-CCCChh-HHHH----HHHHHHHhcCC
Q 019168 54 GPYIGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVM-TGEQTV-NSGI----TVQILLDAFDI 127 (345)
Q Consensus 54 ~~~I~Ii~Al~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~G~i~g~~Vvv~~-~G~G~v-~Aa~----~~~~li~~f~~ 127 (345)
.|+||||+.+.-.++..+........ ..|+-+ ..-.+..|+++|++|++.. .|-+.. .... +--++++..++
T Consensus 3 ~p~igIIgGSGl~~~~~l~~~~~~~~-~tpyg~-psg~l~~G~l~G~~V~~l~RhGr~H~y~p~~i~~rAni~alk~lGv 80 (289)
T PRK08931 3 KAVLGIIGGSGVYDIDGLEDARWERV-ESPWGE-PSDALLFGRLGGVPMVFLPRHGRGHRLSPSDINYRANIDALKRAGV 80 (289)
T ss_pred CceEEEEecCCcCCccccccceeeee-EcCCCC-CcCcEEEEEECCEEEEEEeCCCCCCccChHHcccHHHHHHHHHcCC
Confidence 57899999873332222222222111 122211 1346889999999999985 664431 1111 12246667799
Q ss_pred cEEEEEeeecccCCCCccccEEEeccceeeCCcccccccccCCCCCccCccCCCCCcchhhhhcccccCCcccccCCCCC
Q 019168 128 RGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPM 207 (345)
Q Consensus 128 ~~ii~~GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p~ 207 (345)
+.+|.++.|||+++++++||+|+++..+..-. . .. .++ |..... .-.++
T Consensus 81 ~~ii~tnA~Gsln~~~~pGd~vi~~D~In~t~--~----~~---~~~--------------------~g~~~~--~f~~m 129 (289)
T PRK08931 81 TDIVSLSACGSFREELPPGTFVIVDQFIDRTF--A----RE---KSF--------------------FGTGCV--AHVSM 129 (289)
T ss_pred CEEEEecccccCCCCCCCCCEEeehhhhccCC--C----CC---CCc--------------------cCCCcc--cCCCC
Confidence 99999999999999999999999998875421 0 00 000 000000 00011
Q ss_pred CcccccCCChHHHHHHHhhh-hhhhccccCCCCCCCCCCeEEEE-ee-eeehhhhccCHHHHHHHHHHcCceEEecchhH
Q 019168 208 EELFWLPVDSEWFDIATQLQ-DLELRRCLNDTYCLPERPKVIVG-LR-GSTADIFLDNAAYREFLFKQFNVSTVDEESAA 284 (345)
Q Consensus 208 ~~~~~~~~d~~l~~~a~~~~-~~~l~~~~~~~~~~~~~~~v~~G-~i-g~Sgd~~~~~~~~~~~L~~~~~~~~vdMEsaa 284 (345)
. -+-++.|.+.+.+.. +. +.++|.| +. +..|..|-+-+|.| +.+.+|+++|-|-+..
T Consensus 130 ~----~~y~~~Lr~~l~~~a~~~--------------~~~~~~~GvYv~~~GPrfET~AEir--~~r~~GaDvVGMStvP 189 (289)
T PRK08931 130 A----HPVCPRLGDRLAAAARAE--------------GITVHRGGTYLCMEGPQFSTLAESK--LYRSWGCDVIGMTNMP 189 (289)
T ss_pred C----cccCHHHHHHHHHHHHHc--------------CCeEecceEEEEeeCCCCCCHHHHH--HHHHcCCCEeccCccH
Confidence 1 133788888777652 21 2334422 21 25899997766644 4567899999999999
Q ss_pred HHHHHHhCCCCEEEEEeeccCCCCC--CCccchhhH----HHHHHHHHHHHHHHHHhccc
Q 019168 285 IVMACLSNAVPSIVFRGVSDLGGGS--DRLLSISRI----SLASINALRVAAEFIALIDK 338 (345)
Q Consensus 285 va~va~~~~ip~l~IR~ISD~a~~~--~~~~~~~~~----~~Aa~~aa~~~~~~l~~l~~ 338 (345)
-+.+|+..|++++.|-.|+|++... ....+.++. ..+..+..+++..+|..+..
T Consensus 190 EvilAre~Gl~~a~is~VTN~a~g~~~~~~~t~eeV~~~~~~~~~~~~~ll~~~i~~l~~ 249 (289)
T PRK08931 190 EAKLAREAEICYATVAMVTDYDCWHPDHDAVTVDAVIAVLLANADKARALVARLAPDLGA 249 (289)
T ss_pred HHHHHHHcCCceEEEEEEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998532 122334443 44556677778888888743
No 38
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=99.36 E-value=2.4e-10 Score=103.67 Aligned_cols=186 Identities=13% Similarity=0.084 Sum_probs=125.2
Q ss_pred EEEEEEECCEEEEEEeCCC-----ChhHHHHHHHHHHHhcCCcEEEEEeeecccCCCCccccEEEeccceeeCCcccccc
Q 019168 91 RFNVGKIKNVDVIYVMTGE-----QTVNSGITVQILLDAFDIRGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAF 165 (345)
Q Consensus 91 ~~~~G~i~g~~Vvv~~~G~-----G~v~Aa~~~~~li~~f~~~~ii~~GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~ 165 (345)
++..|+++|++|++..... ..++...+--++++..+++.+|.++.+||+++++++||+++.+..+....
T Consensus 42 ~l~~G~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii~tna~Gsl~~~~~pGdlv~~~D~I~~t~------ 115 (237)
T TIGR01698 42 ELIRVRIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLILTNAAGGLRQDWGPGTPVLISDHINLTA------ 115 (237)
T ss_pred eEEEEEECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEEEEcccccCCCCCCCCCEEeechhcccCC------
Confidence 6889999999999987321 23454344446677789999999999999999999999999998875421
Q ss_pred cccCCCCCccCccCCCCCcchhhhhcccccCCcccccCCCCCCcccccCCChHHHHHHHhhhhhhhccccCCCCCCCCCC
Q 019168 166 KSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWLPVDSEWFDIATQLQDLELRRCLNDTYCLPERP 245 (345)
Q Consensus 166 g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p~~~~~~~~~d~~l~~~a~~~~~~~l~~~~~~~~~~~~~~ 245 (345)
..| + .+ .. .+ ++. -+-|+.|.+.+++.. .
T Consensus 116 -----~~p-l-~g--------~~-----~~----------d~~----~~yd~~Lr~~a~~~~-----------------~ 144 (237)
T TIGR01698 116 -----RSP-L-IG--------PR-----FV----------DLT----DAYSPRLRELAERVD-----------------P 144 (237)
T ss_pred -----CCC-C-CC--------Cc-----cC----------CCC----cccCHHHHHHHHHcC-----------------C
Confidence 101 0 00 00 00 011 133788886665431 1
Q ss_pred eEEEEee-eeehhhhccCHHHHHHHHHHcCceEEecchhHHHHHHHhCCCCEEEEEeeccCCCCCC-CccchhhHHHHHH
Q 019168 246 KVIVGLR-GSTADIFLDNAAYREFLFKQFNVSTVDEESAAIVMACLSNAVPSIVFRGVSDLGGGSD-RLLSISRISLASI 323 (345)
Q Consensus 246 ~v~~G~i-g~Sgd~~~~~~~~~~~L~~~~~~~~vdMEsaava~va~~~~ip~l~IR~ISD~a~~~~-~~~~~~~~~~Aa~ 323 (345)
+++.|+. ...|..|-+-+|.| +.+.+|+++|-|-+..-+.+|+..+++++.|-.|+|++.... ...+.++....++
T Consensus 145 ~~~~GvY~~~~GP~fET~AEir--~~r~~GaD~VGMS~vpEvilAre~g~~~a~is~VtN~a~g~~~~~~th~ev~~~~~ 222 (237)
T TIGR01698 145 PLAEGVYAWFPGPHYETPAEIR--MAGILGADLVGMSTVPETIAARFCGLEVLGVSLVTNLAAGITGTPLSHAEVKAAGA 222 (237)
T ss_pred CccCEEEEEecCCCcCCHHHHH--HHHHcCCCEeccCchHHHHHHHHCCCcEEEEEEEeccccCCCCCCCCHHHHHHHHH
Confidence 2333431 25899997766644 456789999999999999999999999999999999996541 2223334344444
Q ss_pred HHHHHHHHHHHh
Q 019168 324 NALRVAAEFIAL 335 (345)
Q Consensus 324 ~aa~~~~~~l~~ 335 (345)
.+..-+.+++..
T Consensus 223 ~~~~~~~~ll~~ 234 (237)
T TIGR01698 223 AAGTRLAALLAD 234 (237)
T ss_pred HHHHHHHHHHHH
Confidence 555555555554
No 39
>PRK07432 5'-methylthioadenosine phosphorylase; Provisional
Probab=99.34 E-value=1.9e-10 Score=107.14 Aligned_cols=236 Identities=11% Similarity=0.091 Sum_probs=147.9
Q ss_pred CCEEEEEecCcHHHHHHHHhhhcccCCCCcccccC---CcEEEEEEECCEEEEEE-eCCCCh------hHHHHHHHHHHH
Q 019168 54 GPYIGLVMAYPPEESALITSRLFVHNSRIPFIDLA---GRRFNVGKIKNVDVIYV-MTGEQT------VNSGITVQILLD 123 (345)
Q Consensus 54 ~~~I~Ii~Al~~~E~~~l~~~l~~~~~~~~~~~~~---~~~~~~G~i~g~~Vvv~-~~G~G~------v~Aa~~~~~li~ 123 (345)
.|+||||+.+.-..++.+... ... +..+.. .-.+..|+++|++|++. +.|-+. +|.. +.-++++
T Consensus 3 ~~~igIIgGSGl~~l~~l~~~-~~~----~~~tp~G~ps~~l~~G~l~g~~v~~l~RhGr~H~y~p~~i~~r-Ani~alk 76 (290)
T PRK07432 3 QAKIGIIGGSGLYKMEALKDV-EEV----QLETPFGSPSDALIVGTLDGTRVAFLARHGRNHTLLPTELPFR-ANIYAMK 76 (290)
T ss_pred CCcEEEEecCccCChhhcCcc-eEE----EeeCCCCCCCCCEEEEEECCEEEEEEECCCCCCccChhhcCcH-HHHHHHH
Confidence 468999998744443322211 111 112222 34688899999999887 345332 1211 1134666
Q ss_pred hcCCcEEEEEeeecccCCCCccccEEEeccceeeCCcccccccccCCCCCccCccCCCCCcchhhhhcccccCCcccccC
Q 019168 124 AFDIRGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSA 203 (345)
Q Consensus 124 ~f~~~~ii~~GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~ 203 (345)
..+++.+|.+..+||+++++++||+|+++..+.... .. |. ..|.. .. ..+
T Consensus 77 ~lGv~~ii~tna~Gsln~~~~pGdlvv~~D~Id~t~--~r---------p~---t~~~~-----~~---~~~-------- 126 (290)
T PRK07432 77 QLGVEYLISASAVGSLKEEAKPLDMVVPDQFIDRTK--NR---------IS---TFFGE-----GI---VAH-------- 126 (290)
T ss_pred HcCCCEEEEEeccccccCCCCCCCEEeecceecCCC--CC---------CC---cccCC-----Cc---ccC--------
Confidence 779999999999999999999999999998885421 00 00 00000 00 000
Q ss_pred CCCCCcccccCCChHHHHHHHhhh-hhhhccccCCCCCCCCCCeEE-EEee-eeehhhhccCHHHHHHHHHHcCceEEec
Q 019168 204 GKPMEELFWLPVDSEWFDIATQLQ-DLELRRCLNDTYCLPERPKVI-VGLR-GSTADIFLDNAAYREFLFKQFNVSTVDE 280 (345)
Q Consensus 204 ~~p~~~~~~~~~d~~l~~~a~~~~-~~~l~~~~~~~~~~~~~~~v~-~G~i-g~Sgd~~~~~~~~~~~L~~~~~~~~vdM 280 (345)
.++. -+-++.|.+.+.++. +..+ .+.++| .|+. ...|..|-+-+|.| +.+.+|+++|-|
T Consensus 127 -~~~~----~~y~~~Lr~~l~~~a~~~~~-----------~~~~~~~~GvYv~~~GPrfET~AEir--~~r~~GaDvVGM 188 (290)
T PRK07432 127 -IGFG----DPICPALAGVLADAIASLNL-----------PDVTLHRGGTYVCMEGPAFSTKAESN--LYRSWGATVIGM 188 (290)
T ss_pred -CcCC----CCcCHHHHHHHHHHHHHcCC-----------CccceeCCeEEEEeeCCCCCcHHHHH--HHHHcCCCEecc
Confidence 0111 123788888777652 2111 012445 3542 25888987666643 456789999999
Q ss_pred chhHHHHHHHhCCCCEEEEEeeccCCCCC--CCccchhhH----HHHHHHHHHHHHHHHHhcccCCCCC
Q 019168 281 ESAAIVMACLSNAVPSIVFRGVSDLGGGS--DRLLSISRI----SLASINALRVAAEFIALIDKNNLVH 343 (345)
Q Consensus 281 Esaava~va~~~~ip~l~IR~ISD~a~~~--~~~~~~~~~----~~Aa~~aa~~~~~~l~~l~~~~~~~ 343 (345)
-++.-+.+|+..|++++.|-.|+|++-.. ....+.++. +.++.+..+++..+|..+....+.|
T Consensus 189 S~vPEvilAre~Gl~~a~ls~VTN~a~g~~~~~~~s~eeV~~~~~~~~~~~~~ll~~~i~~l~~~~~~~ 257 (290)
T PRK07432 189 TNLPEAKLAREAEIAYATLALVTDYDCWHPDHDSVTVEMVIGNLHKNAVNAQKVIQETVRRLSANPPVS 257 (290)
T ss_pred CchHHHHHHHhCCCcEEEEEEEeecccccCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 99999999999999999999999999532 122234443 5566777788888888886655543
No 40
>PF06516 NUP: Purine nucleoside permease (NUP); InterPro: IPR009486 This family consists of several purine nucleoside permease from both bacteria and fungi [].; GO: 0055085 transmembrane transport
Probab=99.32 E-value=1.5e-10 Score=108.09 Aligned_cols=260 Identities=22% Similarity=0.224 Sum_probs=158.2
Q ss_pred CCEEEEEecCcHHHHHHHHhhhcccCCCCcccccCCc--EEEEEEEC-CEEEEEEeCCCChhHHHHHHHHHHHh--cC--
Q 019168 54 GPYIGLVMAYPPEESALITSRLFVHNSRIPFIDLAGR--RFNVGKIK-NVDVIYVMTGEQTVNSGITVQILLDA--FD-- 126 (345)
Q Consensus 54 ~~~I~Ii~Al~~~E~~~l~~~l~~~~~~~~~~~~~~~--~~~~G~i~-g~~Vvv~~~G~G~v~Aa~~~~~li~~--f~-- 126 (345)
.|+|.||+.. +.|.+.-.+.+...+ .+.+.|. .|..-..+ .+.|+.+.||+|+.|||.++..|... |.
T Consensus 2 ~~KV~VvtmF-e~E~q~W~e~~~l~~----~i~vpG~s~~~~~v~cn~~~~Vc~~~tG~G~~nAAasi~AL~ldp~FDls 76 (314)
T PF06516_consen 2 PPKVVVVTMF-EGEFQPWLERLDLDH----NITVPGLSPLYPPVHCNADGGVCGITTGEGEINAAASIMALGLDPRFDLS 76 (314)
T ss_pred CceEEEEeCC-CHHHhhhhhccCCCe----EEeeCCCCCCCCceEEcCCCCEEEEEecccccchHHHHHHHhhCCccCCc
Confidence 3789999999 555555445544433 3444443 12222333 44799999999999999998887764 33
Q ss_pred CcEEEEEeeecccCCCCccccEEEeccceeeCCcccccccccCCCCCc-cCccCCCCCcchhhhhcccccCCcccccCCC
Q 019168 127 IRGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPE-LDFGAFNFPVRGKNLLAKVEFTPSQLYSAGK 205 (345)
Q Consensus 127 ~~~ii~~GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~-~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~ 205 (345)
=..+|..||||.-+....+|+|+++..+++.|... .....++|. -+.|-|.+ + ..++.+. +..
T Consensus 77 ~tYfliaGIAGv~P~~~tlGSvawA~~~Vd~dl~~----eiD~Re~P~~w~~Gy~~~---g-------~~~P~~~--p~~ 140 (314)
T PF06516_consen 77 KTYFLIAGIAGVDPKQGTLGSVAWARYVVDGDLQY----EIDAREIPADWPTGYFPY---G-------TKRPNQY--PRS 140 (314)
T ss_pred ceEEEEeecccCCcCcCceeeeeeeeeeechhhcc----ccccccccCCCCCCCccc---C-------CCCcccC--CCC
Confidence 35899999999777789999999999999987511 122233321 00000000 0 0011111 000
Q ss_pred CCCcccccCCChHHHHHHHhh-hhhhhcccc-----CCCCC----CCCCCeEEEEeeeeehhhhccCHHH---HHHHHHH
Q 019168 206 PMEELFWLPVDSEWFDIATQL-QDLELRRCL-----NDTYC----LPERPKVIVGLRGSTADIFLDNAAY---REFLFKQ 272 (345)
Q Consensus 206 p~~~~~~~~~d~~l~~~a~~~-~~~~l~~~~-----~~~~~----~~~~~~v~~G~ig~Sgd~~~~~~~~---~~~L~~~ 272 (345)
... ...|+.++.|++.|.++ ++.+|.... +..+. -.+.|.|..|-. +|||.|++.... .+.+.+.
T Consensus 141 ~~~-tevf~LN~~L~~~A~~ltk~v~L~Ds~~~~~~R~~Y~~~~~A~~~P~V~~gDt-~tsd~ywhG~~l~~~a~~~~~~ 218 (314)
T PF06516_consen 141 VYG-TEVFELNPALVDWAYELTKDVELPDSPAAAAYRARYPGYPAAQRPPFVLKGDT-LTSDTYWHGARLNEWAEDWVKL 218 (314)
T ss_pred CCC-ceEEEcCHHHHHHHHHHhcCCccCCCHHHHHHHHhCCCCcccCCCCEEEEccc-cccCCeeeCcHHHHHHHHHHHH
Confidence 001 22478899999999887 455443210 00111 134678999999 899999997643 3444444
Q ss_pred c--C---ceEEecchhHHHHHHHhCCC-------CEEEEEeeccCCCCCCCc--------cchhhHHHHHHHHHHHHHHH
Q 019168 273 F--N---VSTVDEESAAIVMACLSNAV-------PSIVFRGVSDLGGGSDRL--------LSISRISLASINALRVAAEF 332 (345)
Q Consensus 273 ~--~---~~~vdMEsaava~va~~~~i-------p~l~IR~ISD~a~~~~~~--------~~~~~~~~Aa~~aa~~~~~~ 332 (345)
+ | -..-.||..|.+++-.+... .++++|.+||+.-..... ..+..|..|.+|+..+...+
T Consensus 219 ~T~G~g~y~~T~~ED~atl~aL~r~~~~g~vD~~RvlvlRt~SNFdrpppg~ta~~~l~~~~~~g~~~Al~N~y~vG~~V 298 (314)
T PF06516_consen 219 WTNGQGTYCTTAMEDNATLEALTRLAKAGRVDFDRVLVLRTASNFDRPPPGQTAAESLFAESQGGFAPALENAYRVGSPV 298 (314)
T ss_pred HhCCcccEechHHHhHHHHHHHHHHHhcCCcCcceEEEEecccCCCCCccCCCHHHHhcccCCCcHHHHHHHHHHHhHHH
Confidence 4 2 46789999999888765432 589999999996553110 11123466777766666666
Q ss_pred HHhc
Q 019168 333 IALI 336 (345)
Q Consensus 333 l~~l 336 (345)
++.|
T Consensus 299 V~~i 302 (314)
T PF06516_consen 299 VDDI 302 (314)
T ss_pred HHHH
Confidence 6554
No 41
>PRK07823 5'-methylthioadenosine phosphorylase; Validated
Probab=99.27 E-value=1.3e-09 Score=100.42 Aligned_cols=227 Identities=16% Similarity=0.132 Sum_probs=141.0
Q ss_pred CCCEEEEEecCcHHHHHHHHh-hhcccCCCCcccccCCcEEEEEEECCEEEEEE-eCCCC------hhHHHHHHHHHHHh
Q 019168 53 GGPYIGLVMAYPPEESALITS-RLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYV-MTGEQ------TVNSGITVQILLDA 124 (345)
Q Consensus 53 ~~~~I~Ii~Al~~~E~~~l~~-~l~~~~~~~~~~~~~~~~~~~G~i~g~~Vvv~-~~G~G------~v~Aa~~~~~li~~ 124 (345)
..|+||||+.+.-.. +.+ .........|+-+ ..-.+..|+++|++|++. +.|-+ ..+.. +--++++.
T Consensus 4 ~~p~igII~GSGl~~---l~~~~~~~~~~~tpyg~-~sg~l~~G~l~g~~v~~l~RhGr~H~ye~~~i~~r-ani~alk~ 78 (264)
T PRK07823 4 NGAMLGVIGGSGFYS---FFGSDAREVNVDTPYGP-PSAPITIGEVGGRRVAFLPRHGRDHEFSPHTVPYR-ANMWALRA 78 (264)
T ss_pred CCceEEEEeccccch---hhcccceeeEEeccCCC-CCCCEEEEEECCEEEEEEeCCCCCCCcCCCCccch-HHHHHHHH
Confidence 468999999873322 212 1111111122221 123588899999999888 33422 13322 22245567
Q ss_pred cCCcEEEEEeeecccCCCCccccEEEeccceeeCCcccccccccCCCCCccCccCCCCCcchhhhhcccccCCcccccCC
Q 019168 125 FDIRGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAG 204 (345)
Q Consensus 125 f~~~~ii~~GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~ 204 (345)
.+++.+|.+..+||+++++++||+||++.++.. +. +. | +.+ |+.+..+
T Consensus 79 lGv~~ii~tnA~Gsln~~~~pGdlvi~dd~id~-----t~-~~-----p-~t~-----------------~~~g~~f--- 126 (264)
T PRK07823 79 LGVRRVFAPCAVGSLRPELGPGTVVVPDQLVDR-----TS-GR-----A-QTY-----------------FDSGGVH--- 126 (264)
T ss_pred cCCCEEEEecccccCCCCCCCCCEEEcchhhhc-----cC-CC-----C-CCc-----------------cCCCccC---
Confidence 799999999999999999999999998877632 10 00 0 000 0000000
Q ss_pred CCCCcccccCCChHHHHHHHhhhhhhhccccCCCCCCCCCCeEEEEeeeeehhhhccCHHHHHHHHHHcCceEEecchhH
Q 019168 205 KPMEELFWLPVDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQFNVSTVDEESAA 284 (345)
Q Consensus 205 ~p~~~~~~~~~d~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~v~~G~ig~Sgd~~~~~~~~~~~L~~~~~~~~vdMEsaa 284 (345)
.++. -+-|+.|.+.+.+..+ .+ +-.++.. ..|..|-+-+|.| +.+.+|+++|-|-+..
T Consensus 127 ~~m~----~~y~~~Lr~~l~~~a~-~~------------~~GvY~~---~~GP~fET~AEir--~~r~~GaDvVGMS~vP 184 (264)
T PRK07823 127 VSFA----DPYCPTLRAAALGLPG-VV------------DGGTMVV---VQGPRFSTRAESR--WFAAQGWSLVNMTGYP 184 (264)
T ss_pred CCCC----cccCHHHHHHHHHHHh-hc------------CCeEEEE---eeCCCCCCHHHHH--HHHHcCCCEeccCccH
Confidence 0111 1237888888777532 11 1123332 5899997766644 4567899999999999
Q ss_pred HHHHHHhCCCCEEEEEeeccCCCCCC--CccchhhH----HHHHHHHHHHHHHHHHhccc
Q 019168 285 IVMACLSNAVPSIVFRGVSDLGGGSD--RLLSISRI----SLASINALRVAAEFIALIDK 338 (345)
Q Consensus 285 va~va~~~~ip~l~IR~ISD~a~~~~--~~~~~~~~----~~Aa~~aa~~~~~~l~~l~~ 338 (345)
-+.+|+..+++++.|-.|+|++.... ...+.++. +.++.+..+++..+|..++.
T Consensus 185 EvilAre~gl~~~~is~VTN~a~g~~~~~~~~~eev~~~~~~~~~~~~~ll~~~i~~~~~ 244 (264)
T PRK07823 185 EAVLARELELCYAAIALVTDLDAGVEAGEGVKAVDVFAEFGRNIERLKRLVRDAIAAVPA 244 (264)
T ss_pred HHHHHHHCCCceEEEEEEeccccCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999985531 22223333 55556677777888877754
No 42
>COG0005 Pnp Purine nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=99.04 E-value=2.8e-08 Score=90.72 Aligned_cols=231 Identities=17% Similarity=0.137 Sum_probs=140.9
Q ss_pred CCCEEEEEecCcHHHHHHHHhhhcccCCCCcccccCCcEEEEEEEC--CEE-EEEEeCCCC------hhHHHHHHHHHHH
Q 019168 53 GGPYIGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNVGKIK--NVD-VIYVMTGEQ------TVNSGITVQILLD 123 (345)
Q Consensus 53 ~~~~I~Ii~Al~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~G~i~--g~~-Vvv~~~G~G------~v~Aa~~~~~li~ 123 (345)
.+|.||||+.+.--+++...+ ...+....|-+-......+.|++. |.. -++.+.|-+ +.+.... -+.++
T Consensus 15 ~~~~igiIgGSGl~~l~~~~~-~~~~~~~~tpfg~~s~~~~~g~~~~~g~~v~~l~rhGr~H~y~ph~~~~ran-i~alk 92 (262)
T COG0005 15 EMPMIGIIGGSGLYDLADLLE-VREPYSDITPFGVPSVPGHAGELVTLGGKVAFLARHGRGHSYPPHSVNYRAN-IRALK 92 (262)
T ss_pred CCccEEEEecccccccccccc-cceecccCCCCCCCCCceEEEEEeecCceEEEEecCCCCCCCCCCCchHHHH-HHHHH
Confidence 579999999874333333222 122221111122234456778776 666 666677754 3444333 46667
Q ss_pred hcCCcEEEEEeeecccCCCCccccEEEeccceeeCCcccccccccCCCCCccCccCCCCCcchhhhhcccccCCcccccC
Q 019168 124 AFDIRGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSA 203 (345)
Q Consensus 124 ~f~~~~ii~~GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~ 203 (345)
..+++.||.+..+||+++++++||+|+++..+.+.. ++.|... ++. +....+
T Consensus 93 ~lGV~~vi~tnAvGsl~~~~~pGd~vv~~d~Id~t~----------r~~~~~~----------~~~-~~~~~d------- 144 (262)
T COG0005 93 ALGVERVILTNAVGSLREEYKPGDLVVPDDHIDFTK----------RQNPFYG----------GND-GVRFVD------- 144 (262)
T ss_pred HcCCeEEEEecccccccccCCCCCEEeehhheeccC----------CCCcccC----------CCC-ceeeCC-------
Confidence 789999999999999999999999999999987641 1111111 000 000000
Q ss_pred CCCCCcccccCCChHHHHHHHhhh-hhhhccccCCCCCCCCCCeEEEEee-eeehhhhccCHHHHHHHHHHcCceEEecc
Q 019168 204 GKPMEELFWLPVDSEWFDIATQLQ-DLELRRCLNDTYCLPERPKVIVGLR-GSTADIFLDNAAYREFLFKQFNVSTVDEE 281 (345)
Q Consensus 204 ~~p~~~~~~~~~d~~l~~~a~~~~-~~~l~~~~~~~~~~~~~~~v~~G~i-g~Sgd~~~~~~~~~~~L~~~~~~~~vdME 281 (345)
.. -+-++.|.+.+.+.. +..+ ....+.|+. +.+|..|-+-+|.+ ..+.++++++-|-
T Consensus 145 ---~s----~~y~~~lr~~l~~~a~~~~~------------~~~~~~GvYv~~eGP~feT~AEir--m~r~~GaDvVGMS 203 (262)
T COG0005 145 ---MS----DPYDPELREALAEAAKELRL------------GHPLQEGVYVCVEGPRFETPAEIR--MFRSLGADVVGMS 203 (262)
T ss_pred ---CC----CcCCHHHHHHHHHHHhhccc------------CcccCceEEEEecCCCcCCHHHHH--HHHHhCCCcccCc
Confidence 01 133788887776652 1111 112222321 25999997766643 4567899999999
Q ss_pred hhHHHHHHHhCCCCEEEEEeeccCCCCCCCccchhhH----HHHHHHHHHHHHHHHH
Q 019168 282 SAAIVMACLSNAVPSIVFRGVSDLGGGSDRLLSISRI----SLASINALRVAAEFIA 334 (345)
Q Consensus 282 saava~va~~~~ip~l~IR~ISD~a~~~~~~~~~~~~----~~Aa~~aa~~~~~~l~ 334 (345)
+..-+.+|+..++.++.|-.|+|++-..+...+.++- ...+.+..+++.++|.
T Consensus 204 ~vPEv~lARe~~l~ya~is~vTn~aag~~~~lt~eEV~~~~~~~~~~~~~l~~~~i~ 260 (262)
T COG0005 204 TVPEVILARELGLCVAALSLVTNYAAGIGQPLTHEEVLEVAKENAEKIAKLLAAAIA 260 (262)
T ss_pred CCcHHHHhHhhCCcEEEEEEeehhhccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998655344444443 3334444555555544
No 43
>KOG3984 consensus Purine nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=98.91 E-value=9.2e-08 Score=84.77 Aligned_cols=236 Identities=15% Similarity=0.226 Sum_probs=143.5
Q ss_pred CCCEEEEEecCcHHHHHHHHhhhcccC-------CCCcccccCCc--EEEEEEECCEEEEEEeCC----CChhHHHHH-H
Q 019168 53 GGPYIGLVMAYPPEESALITSRLFVHN-------SRIPFIDLAGR--RFNVGKIKNVDVIYVMTG----EQTVNSGIT-V 118 (345)
Q Consensus 53 ~~~~I~Ii~Al~~~E~~~l~~~l~~~~-------~~~~~~~~~~~--~~~~G~i~g~~Vvv~~~G----~G~v~Aa~~-~ 118 (345)
.+|+++|||... +..+.+.+..+. +.+|+....|. +++.|+++|++|++.+.. -|-.-+..+ -
T Consensus 23 ~rpk~gIICGSg---Lg~l~~~l~~p~i~pYedIP~Fp~s~vpghag~lvfG~l~G~pvv~mqgrfh~yegy~L~~~tfp 99 (286)
T KOG3984|consen 23 IRPKVGIICGSG---LGGLADKLSQPVIVPYEDIPNFPVSTVPGHAGRLVFGTLGGAPVVAMQGRFHSYEGYPLAKCTFP 99 (286)
T ss_pred cCCceEEEecCC---cchhhhhccCCEEecHhhCCCCCcccCCCCcccEEEEecCCceEEEEcccccccCCccHHHhhhh
Confidence 469999999873 333333333322 12344444443 489999999999998653 243333222 3
Q ss_pred HHHHHhcCCcEEEEEeeecccCCCCccccEEEeccceeeCCcccccccccCCCCCccCccCCCCCcchhhhhcccccCCc
Q 019168 119 QILLDAFDIRGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPS 198 (345)
Q Consensus 119 ~~li~~f~~~~ii~~GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~ 198 (345)
-+.++..+++.++.+--|||+++.+++||+.+-..-+..- |+ .||.| ..|.|.- .|+-++
T Consensus 100 vrVm~l~Gv~~lvvTnaAggin~~f~vgdiMli~DHin~~-------G~-agq~p----------l~Gpnd~-rfG~rf- 159 (286)
T KOG3984|consen 100 VRVMQLLGVRILVVTNAAGGINPKFAVGDIMLIKDHINLP-------GL-AGQNP----------LRGPNDP-RFGVRF- 159 (286)
T ss_pred HHHHHHcCceEEEEeccccCcCcccccccEEEEecccCCc-------cc-cCCCC----------CCCCCcc-cccccc-
Confidence 3556667999999999999999999999998876554331 11 12221 1111110 111110
Q ss_pred ccccCCCC-CCcccccCCChHHHHHHHhh-hhhhhccccCCCCCCCCCCeEEEEee-eeehhhhccCHHHHHHHHHHcCc
Q 019168 199 QLYSAGKP-MEELFWLPVDSEWFDIATQL-QDLELRRCLNDTYCLPERPKVIVGLR-GSTADIFLDNAAYREFLFKQFNV 275 (345)
Q Consensus 199 ~~~~~~~p-~~~~~~~~~d~~l~~~a~~~-~~~~l~~~~~~~~~~~~~~~v~~G~i-g~Sgd~~~~~~~~~~~L~~~~~~ 275 (345)
| ..+ .-|.+|.+.+.+. +.+.. ...+|.|+. .++|..|-+-+|.| +.+..++
T Consensus 160 -------~a~sd----AYd~~lr~~a~~~~K~m~i------------qr~lheGvy~~vgGP~~eT~AE~r--mlr~mg~ 214 (286)
T KOG3984|consen 160 -------PALSD----AYDKDLRQKALEIGKAMGI------------QRTLHEGVYACVGGPIFETRAESR--MLRTMGA 214 (286)
T ss_pred -------cchhh----hhhHHHHHHHHHHHHHhcc------------cchhhcceEEEecCCccccHHHHH--HHHHhCc
Confidence 1 111 1266777776665 22221 225677762 26888887766643 5566799
Q ss_pred eEEecchhHHHHHHHhCCCCEEEEEeeccCCCCCCC-----ccchhhHHHHHHHHHHHHHHHHHhc
Q 019168 276 STVDEESAAIVMACLSNAVPSIVFRGVSDLGGGSDR-----LLSISRISLASINALRVAAEFIALI 336 (345)
Q Consensus 276 ~~vdMEsaava~va~~~~ip~l~IR~ISD~a~~~~~-----~~~~~~~~~Aa~~aa~~~~~~l~~l 336 (345)
+|+-|.+..-.-+|+..|+.++++-.|+|.+.-+.+ ..+.++--...+++++-+..|+..|
T Consensus 215 dAVGMStvpEVivArHcG~kVlafslITn~~~~d~s~sa~~ev~h~evl~v~~~a~~~~~~lVs~l 280 (286)
T KOG3984|consen 215 DAVGMSTVPEVIVARHCGLKVLAFSLITNKAVVDESASADVEVDHDEVLEVGKQAAQACSDLVSRL 280 (286)
T ss_pred ccccccccchheeeccCCcEEEEEEEEeccccccCchhccccCCHHHHHhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998744311 1112221444555555555555543
No 44
>KOG3985 consensus Methylthioadenosine phosphorylase MTAP [Nucleotide transport and metabolism]
Probab=98.77 E-value=6.3e-07 Score=79.01 Aligned_cols=241 Identities=13% Similarity=0.172 Sum_probs=147.6
Q ss_pred CCEEEEEecCcHHHHHHHHhhhcccCCCCcccccCCcEEEEEEECCEEEEE-EeCCC------ChhHHHHHHHHHHHhcC
Q 019168 54 GPYIGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIY-VMTGE------QTVNSGITVQILLDAFD 126 (345)
Q Consensus 54 ~~~I~Ii~Al~~~E~~~l~~~l~~~~~~~~~~~~~~~~~~~G~i~g~~Vvv-~~~G~------G~v~Aa~~~~~li~~f~ 126 (345)
+-++|||....-....-+..... ...+.| +-........|+++|..+++ ++.|. +++|-...+. .+...+
T Consensus 9 ~VklGIIGGsGl~dp~ile~~ve-~~v~TP-~G~pSd~v~~g~i~gv~cvllARHGr~H~imPt~Vn~rANiw-ALk~~g 85 (283)
T KOG3985|consen 9 TVKLGIIGGSGLYDPDILEDPVE-LVVPTP-WGKPSDPVIIGQISGVHCVLLARHGRKHDIMPTKVNFRANIW-ALKSLG 85 (283)
T ss_pred eEEEEEeccCCCCCchhhhcchh-hcCCCC-CCCcCCceeeeecCCeEEEEEeccccCCccCCCcCchhHhHH-HHHhCC
Confidence 34799999873333333221111 111122 33344567899999988665 47785 4677655543 345569
Q ss_pred CcEEEEEeeecccCCCCccccEEEeccceeeCCcccccccccCCCCCccCccCCCCCcchhhhhcccccCCcccccCCCC
Q 019168 127 IRGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKP 206 (345)
Q Consensus 127 ~~~ii~~GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p 206 (345)
++.||.+-.||++.+++++||.|+++.++....+.-+.| ++ +.++-+. +-. . -|
T Consensus 86 c~~ii~~tAcGSLre~I~Pgd~v~p~q~IDrTt~R~~tf---------fd-g~~~~a~-gVc---H------------v~ 139 (283)
T KOG3985|consen 86 CTAIISFTACGSLREEIKPGDFVLPDQIIDRTTGRPSTF---------FD-GSYDQAG-GVC---H------------VP 139 (283)
T ss_pred CcEEEEeeccccccccCCCccEecchhhhhhhccCcccc---------cc-CcccCCC-ceE---e------------cc
Confidence 999999999999999999999999999885421100000 00 0000000 000 0 01
Q ss_pred CCcccccCCChHHHHHHHhh-hhhhhccccCCCCCCCCCCeEEEEeeeeehhhhccCHHHHHHHHHHcCceEEecchhHH
Q 019168 207 MEELFWLPVDSEWFDIATQL-QDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNAAYREFLFKQFNVSTVDEESAAI 285 (345)
Q Consensus 207 ~~~~~~~~~d~~l~~~a~~~-~~~~l~~~~~~~~~~~~~~~v~~G~ig~Sgd~~~~~~~~~~~L~~~~~~~~vdMEsaav 285 (345)
+.+ +-++++.+...+. .++.++ |. -+ -++++ .-|..|-..+| ..+.+.||+..+.|-.-.-
T Consensus 140 ~~~----pf~~k~reil~~~a~~l~~~-~h---------d~-~tvVc-iEGPrFStRAE--S~mfR~wGa~vINMt~iPE 201 (283)
T KOG3985|consen 140 FGP----PFSQKLREILISTAKELTNP-HH---------DD-GTVVC-IEGPRFSTRAE--SKMFRSWGASVINMTVIPE 201 (283)
T ss_pred CCC----CcCHHHHHHHHHHHHHhcCC-cC---------Cc-eeEEE-eeCCccchHHH--HHHHHHhccceeeeeechH
Confidence 111 2267777766554 232221 11 11 23444 68999876555 5678899999999999999
Q ss_pred HHHHHhCCCCEEEEEeeccCC---CCCCCccchhh----HHHHHHHHHHHHHHHHHhcccCCCC
Q 019168 286 VMACLSNAVPSIVFRGVSDLG---GGSDRLLSISR----ISLASINALRVAAEFIALIDKNNLV 342 (345)
Q Consensus 286 a~va~~~~ip~l~IR~ISD~a---~~~~~~~~~~~----~~~Aa~~aa~~~~~~l~~l~~~~~~ 342 (345)
+..|++.++|+..|-..+||- ++. ....-+. +..-..+|-.++.+.+..+.+..|-
T Consensus 202 ~~LAkEagi~Y~~iamaTDYDcWr~~e-e~Vtve~Vm~~~~~N~~kak~ll~~av~~i~k~~ws 264 (283)
T KOG3985|consen 202 AKLAKEAGIPYQMIAMATDYDCWRMEE-EPVTVETVMKTLANNVRKAKILLLEAVGSIAKEDWS 264 (283)
T ss_pred HHHHHhcCcchhhheeccchhhhhccC-CCccHHHHHHHHHhhhHHHHHHHHHHHHHhcccchh
Confidence 999999999999999999994 211 1111111 2334466778888888888887764
No 45
>KOG3728 consensus Uridine phosphorylase [Nucleotide transport and metabolism]
Probab=98.39 E-value=1.6e-05 Score=70.62 Aligned_cols=224 Identities=18% Similarity=0.134 Sum_probs=128.2
Q ss_pred CEEEEEecCcHHHHHHHHhhhcccC----CCCc-ccccCCcEEEEEEECCEEEEEEeCCCChhHHHHHHHHHHHhc---C
Q 019168 55 PYIGLVMAYPPEESALITSRLFVHN----SRIP-FIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAF---D 126 (345)
Q Consensus 55 ~~I~Ii~Al~~~E~~~l~~~l~~~~----~~~~-~~~~~~~~~~~G~i~g~~Vvv~~~G~G~v~Aa~~~~~li~~f---~ 126 (345)
-++.-.... |.+...+...+..+- +..| .....+.+| ..++--+|..+..|||.++-++.+.++++.. +
T Consensus 52 vkfVC~GGt-p~Rmk~~a~~~~~el~~~~~~~~~di~a~sdRy--amYKvGPVl~vsHGmGtpS~SImlhEliKLl~~Ar 128 (308)
T KOG3728|consen 52 VKFVCMGGT-PSRMKQFALYLRDELGVSCSGDPVDICARSDRY--AMYKVGPVLCVSHGMGTPSFSIMLHELIKLLYYAR 128 (308)
T ss_pred eEEEEeCCC-HHHHHHHHHHHHHHhCCCCCCCCcchhccccee--EEEeecceEEEecCCCCccHHHHHHHHHHHHHHcc
Confidence 356666677 888877765544332 1111 122233444 3445558899999999999999988888743 3
Q ss_pred C--cEEEEEeeecccCCCCccccEEEeccceeeCCcccccccccCCCCCccCccCCCCCcchhhhhcccccCCcccccCC
Q 019168 127 I--RGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAG 204 (345)
Q Consensus 127 ~--~~ii~~GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~ 204 (345)
+ -.+|.+|+|||+. +.+|.||+++..+..-. +-+..|+ . .|
T Consensus 129 ckdp~~iRiGT~GGiG--v~pGTvV~s~~A~n~~l------~~e~eqi----------------------------i-lG 171 (308)
T KOG3728|consen 129 CKDPVFIRIGTCGGIG--VPPGTVVASKNAFNGLL------RNEHEQI----------------------------I-LG 171 (308)
T ss_pred CCCceEEEEeccCccC--CCCccEEEehhhhhhhh------hhhHHhh----------------------------h-cc
Confidence 3 3789999999986 68999999998775422 1110010 0 00
Q ss_pred CC-CCcccccCCChHHHHHHHhhhhhhhccccCCCCCCCCCCeEEEEeeeeehhhhccCH-------------HHHHHHH
Q 019168 205 KP-MEELFWLPVDSEWFDIATQLQDLELRRCLNDTYCLPERPKVIVGLRGSTADIFLDNA-------------AYREFLF 270 (345)
Q Consensus 205 ~p-~~~~~~~~~d~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~v~~G~ig~Sgd~~~~~~-------------~~~~~L~ 270 (345)
.. .++ -..|.+|.+....... +. .....+..|-+ ...|.|+... +....|.
T Consensus 172 krv~Rp---aqld~~l~~eL~~~~~-e~----------~d~~~ti~gnT-mctddFYEGQgRlDGa~CdysEkdK~afLe 236 (308)
T KOG3728|consen 172 KRVVRP---AQLDKKLIRELLAFGV-EA----------NDGFQTISGNT-MCTDDFYEGQGRLDGAFCDYSEKDKMAFLE 236 (308)
T ss_pred ceeech---hhhhHHHHHHHHHhCC-cc----------CCCCceeeccc-eecchhhcccccccccccCcchhhHHHHHH
Confidence 00 011 1235666554443310 00 11344556666 4666665432 1233454
Q ss_pred HHc--CceEEecchhHHHHHHHhCCCCEEEE-EeeccCCCCCCC---ccchhhHHHHHHHHHHHHHHHHHhc
Q 019168 271 KQF--NVSTVDEESAAIVMACLSNAVPSIVF-RGVSDLGGGSDR---LLSISRISLASINALRVAAEFIALI 336 (345)
Q Consensus 271 ~~~--~~~~vdMEsaava~va~~~~ip~l~I-R~ISD~a~~~~~---~~~~~~~~~Aa~~aa~~~~~~l~~l 336 (345)
+.+ |+..+|||+.-+|.++++.|+...++ =..-|.-++++- .+...+| ..+-.+++-.+|+.+
T Consensus 237 k~~a~GVrNIEMEss~FAs~t~~~G~kaavVCVtLlnRl~GDQi~~~ke~~~Ey---eqRP~~lVs~yIkk~ 305 (308)
T KOG3728|consen 237 KLHALGVRNIEMESSMFASVTQKAGVKAAVVCVTLLNRLKGDQITIPKEQKHEY---EQRPFRLVSRYIKKL 305 (308)
T ss_pred HHHHcCceeeehhHHHHHHHHHhcCcchhhhHHHHHhhccCCcccchHHHHHHH---HhccHHHHHHHHHHH
Confidence 444 89999999999999999999875444 223344433311 1223333 344556666666554
No 46
>COG5042 NUP Purine nucleoside permease [Nucleotide transport and metabolism]
Probab=98.08 E-value=4.1e-05 Score=69.79 Aligned_cols=260 Identities=18% Similarity=0.187 Sum_probs=144.4
Q ss_pred CCEEEEEecCcHHHHHHHHhhhcccCCCCcccccCCcE--EEEEEECCEEEEEEeCCCChhHHHHHHHHHHHh--cC--C
Q 019168 54 GPYIGLVMAYPPEESALITSRLFVHNSRIPFIDLAGRR--FNVGKIKNVDVIYVMTGEQTVNSGITVQILLDA--FD--I 127 (345)
Q Consensus 54 ~~~I~Ii~Al~~~E~~~l~~~l~~~~~~~~~~~~~~~~--~~~G~i~g~~Vvv~~~G~G~v~Aa~~~~~li~~--f~--~ 127 (345)
.++|.||.-+ ..|.++-.+.++-.+ .+.+.|.. |=.-.-+-..|+-+.||||+.|||.++..|+-. |. -
T Consensus 37 ~~KVmvItmF-~~Eaqpwl~~l~lt~----~I~vpGLs~~yP~v~cn~~gvcq~tTgmG~AnAassvsAL~ls~kfdlt~ 111 (349)
T COG5042 37 VPKVMVITMF-EIEAQPWLDGLDLTE----KIAVPGLSPDYPAVHCNADGVCQMTTGMGKANAASSVSALLLSKKFDLTK 111 (349)
T ss_pred CceEEEEEec-ccccchhhhcCCccc----eeeccccCCCCcccccCccchhhhhcccchhhHHHHHHHHHhccccCcce
Confidence 3578899888 667777667767544 23333322 211011222377778999999999988777654 43 3
Q ss_pred cEEEEEeeecccCCCCccccEEEeccceeeCCcccccccccCCCCCc-cCccCCCCCcchhhhhcccccCCcccccCCCC
Q 019168 128 RGVVHYGTAGSSNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPE-LDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKP 206 (345)
Q Consensus 128 ~~ii~~GiaGgl~~~~~lGDVvV~~~vv~~d~~~~~~~g~~~g~~~~-~~~~~~~~p~~~~~~l~~~~y~~~~~~~~~~p 206 (345)
...+..||||=-+..-.+|..-.+.-++..|. .+ .....++|. -+.|.|.+-..+ +++. ++ .+
T Consensus 112 tyfLiAGIAGidP~~gtlGSaawARyaVD~dl-~~---eiD~RE~Pa~Wp~g~~glgt~~----------pg~k-p~-~~ 175 (349)
T COG5042 112 TYFLIAGIAGIDPKAGTLGSAAWARYAVDADL-IH---EIDLREIPAGWPYGFYGLGTEG----------PGVK-PP-MN 175 (349)
T ss_pred eeeeeeeccccCccccccchhHHhhhhccccc-cc---ccccccCcCCCCcccccccCCC----------CCCC-CC-CC
Confidence 57889999987666789999998888887775 11 111122220 011111110000 0000 00 01
Q ss_pred CCcccccCCChHHHHHHHhh-hhhhhcccc-----CCCC---CCCCCCeEEEEeeeeehhhhccCHHHHHHHH---HHc-
Q 019168 207 MEELFWLPVDSEWFDIATQL-QDLELRRCL-----NDTY---CLPERPKVIVGLRGSTADIFLDNAAYREFLF---KQF- 273 (345)
Q Consensus 207 ~~~~~~~~~d~~l~~~a~~~-~~~~l~~~~-----~~~~---~~~~~~~v~~G~ig~Sgd~~~~~~~~~~~L~---~~~- 273 (345)
.+ ...|..+..|++.|..+ +++.++... +..+ .-.+.|.|..+-. +|+|.+++.+..-++.. +..
T Consensus 176 y~-tevf~LN~~L~~~A~altk~v~L~D~~~a~AyRk~Y~~~pA~~pP~V~qcdt-as~dtyWhGa~lgq~~~~w~k~lT 253 (349)
T COG5042 176 YS-TEVFALNERLLDWAYALTKKVVLEDNPEAAAYRKHYVEAPANRPPFVTQCDT-ASADTYWHGAKLGQRAQDWVKVLT 253 (349)
T ss_pred cc-chHHHHHHHHHHHHHHhcCCccccCCHHHHHHHhccccccccCCCeEEeecc-ccccccchhhhhhHHHHHHHHHhh
Confidence 11 11256788888888776 444442211 0111 1123456777778 89999999876544432 222
Q ss_pred ----CceEEecchhHHHHHHHh---CCC----CEEEEEeeccCCCCCCC--------ccchhhHHHHHHHHHHHHHHHHH
Q 019168 274 ----NVSTVDEESAAIVMACLS---NAV----PSIVFRGVSDLGGGSDR--------LLSISRISLASINALRVAAEFIA 334 (345)
Q Consensus 274 ----~~~~vdMEsaava~va~~---~~i----p~l~IR~ISD~a~~~~~--------~~~~~~~~~Aa~~aa~~~~~~l~ 334 (345)
.-...+||--|...+-.+ .|. .++++|.-||+...-.. +.....|..|..|+-++..-++.
T Consensus 254 dg~g~ycttqqEDnatl~aL~r~a~aG~vdf~RVavlRTaSnfdRp~~gqta~~~l~~s~~ggfv~A~dnly~ag~plvd 333 (349)
T COG5042 254 DGKGTYCTTQQEDNATLTALTRAAKAGLVDFNRVAVLRTASNFDRPYLGQTAFDSLVNSTSGGFVLATDNLYRAGKPLVD 333 (349)
T ss_pred CCCcceEecccccchHHHHHHHHhhcccccceeeEEEeeccccCCCCCCCcchhhhhcccCCccchhhhhHHhccchHHH
Confidence 135678888876655432 222 57899999999644310 00111235666666666555555
Q ss_pred hc
Q 019168 335 LI 336 (345)
Q Consensus 335 ~l 336 (345)
+|
T Consensus 334 ~I 335 (349)
T COG5042 334 DI 335 (349)
T ss_pred HH
Confidence 54
No 47
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=63.74 E-value=17 Score=31.98 Aligned_cols=45 Identities=16% Similarity=0.026 Sum_probs=33.4
Q ss_pred ECCEEEEEEeCCCChhHHHHHHHHHHHhcCCcEEEEEeeecccCC
Q 019168 97 IKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVHYGTAGSSNN 141 (345)
Q Consensus 97 i~g~~Vvv~~~G~G~v~Aa~~~~~li~~f~~~~ii~~GiaGgl~~ 141 (345)
++|..|.-..-..---.+..+++..+++++|+.+|++|-|||-..
T Consensus 31 i~g~~V~~~~lP~~f~~s~~~l~~~i~~~qPd~vl~iG~A~GR~~ 75 (207)
T COG2039 31 IGGAEVKGRILPVVFKKSIDALVQAIAEVQPDLVLAIGQAGGRTK 75 (207)
T ss_pred ccCceEEEEEcCccHHHHHHHHHHHHHhhCCCeEEEecccCCCCc
Confidence 366677666554433345566778889999999999999999863
No 48
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=52.72 E-value=40 Score=29.88 Aligned_cols=43 Identities=19% Similarity=0.139 Sum_probs=25.7
Q ss_pred CCEEEEEEeCCCChhHHHHHHHHHHHhcCCcEEEEEeeecccC
Q 019168 98 KNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVHYGTAGSSN 140 (345)
Q Consensus 98 ~g~~Vvv~~~G~G~v~Aa~~~~~li~~f~~~~ii~~GiaGgl~ 140 (345)
.+.+|....-.+---.+...+..++++++|+.+|.+|.+|+-.
T Consensus 32 ~~~~v~~~~lPV~~~~~~~~l~~~l~~~~PdlVIhlGva~~~~ 74 (202)
T PF01470_consen 32 GGAEVHTRELPVSYEKAFEALEELLEEHQPDLVIHLGVAGGRK 74 (202)
T ss_dssp TTEEEEEEEE-SSHHHHHHHHHHHHHHH--SEEEEEEE-TT-S
T ss_pred CCceEEEEEecCchHhHHHHHHHHHHhcCCcEEEEEeecCCcc
Confidence 3455554444433334555667788888999999999999876
No 49
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=51.25 E-value=27 Score=31.58 Aligned_cols=27 Identities=15% Similarity=0.062 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCCcEEEEEeeecccC
Q 019168 114 SGITVQILLDAFDIRGVVHYGTAGSSN 140 (345)
Q Consensus 114 Aa~~~~~li~~f~~~~ii~~GiaGgl~ 140 (345)
+...+..++++++|+.||.+|.+||-.
T Consensus 49 ~~~~l~~~i~~~~Pd~Vi~~G~a~gr~ 75 (222)
T PRK13195 49 SIAAAQQAIAEIEPALVIMLGEYPGRS 75 (222)
T ss_pred HHHHHHHHHHHHCCCEEEEeCccCCcC
Confidence 444667788889999999999999986
No 50
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=49.63 E-value=34 Score=30.63 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=28.2
Q ss_pred CEEEEEEeCCCChhHHHHHHHHHHHhcCCcEEEEEeeecccC
Q 019168 99 NVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVHYGTAGSSN 140 (345)
Q Consensus 99 g~~Vvv~~~G~G~v~Aa~~~~~li~~f~~~~ii~~GiaGgl~ 140 (345)
+.+|....-.+--..+...+..++++++|+.+|++|.+||-.
T Consensus 34 ~~~v~~~~LPV~~~~~~~~l~~~~~~~~Pd~vi~~G~a~gr~ 75 (211)
T PRK13196 34 ALRVHSALLPVEPRAAMAALSRLLDELQPSAVLLTGLAAGRP 75 (211)
T ss_pred CcEEEEEEeCCChhHHHHHHHHHHHHhCCCEEEEecccCCcC
Confidence 344444433332223344677888889999999999999975
No 51
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=44.43 E-value=1.4e+02 Score=26.53 Aligned_cols=44 Identities=20% Similarity=0.295 Sum_probs=28.4
Q ss_pred ECCEEEEEEeCCCCh-hH---HHHHHHHH---HHhcCCcEEEEEeeecccC
Q 019168 97 IKNVDVIYVMTGEQT-VN---SGITVQIL---LDAFDIRGVVHYGTAGSSN 140 (345)
Q Consensus 97 i~g~~Vvv~~~G~G~-v~---Aa~~~~~l---i~~f~~~~ii~~GiaGgl~ 140 (345)
+.|+++|+..-|.+. .+ .....+.| ++..+...++.+|=||++-
T Consensus 60 l~g~DaVIsA~~~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGAGSL~ 110 (211)
T COG2910 60 LAGHDAVISAFGAGASDNDELHSKSIEALIEALKGAGVPRLLVVGGAGSLE 110 (211)
T ss_pred hcCCceEEEeccCCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCccceE
Confidence 358888887766552 11 12223334 4444788999999999984
No 52
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=41.08 E-value=58 Score=29.10 Aligned_cols=42 Identities=12% Similarity=0.074 Sum_probs=27.7
Q ss_pred CEEEEEEeCCCChhHHHHHHHHHHHhcCCcEEEEEeeecccC
Q 019168 99 NVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVHYGTAGSSN 140 (345)
Q Consensus 99 g~~Vvv~~~G~G~v~Aa~~~~~li~~f~~~~ii~~GiaGgl~ 140 (345)
+..|....-.+--..+...+..++++.+|+.+|.+|.+||-+
T Consensus 33 ~~~v~~~~LPV~~~~~~~~l~~~l~~~~Pd~vlhlG~a~~r~ 74 (208)
T PRK13194 33 DAKVFGRVLPVSFKRAREELEKVLDEIKPDITINLGLAPGRT 74 (208)
T ss_pred CcEEEEEEeCCchHhHHHHHHHHHHHhCCCEEEEeeccCCcc
Confidence 344444333333333444566777788999999999999876
No 53
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=39.56 E-value=63 Score=28.90 Aligned_cols=42 Identities=10% Similarity=-0.060 Sum_probs=28.3
Q ss_pred CEEEEEEeCCCChhHHHHHHHHHHHhcCCcEEEEEeeecccC
Q 019168 99 NVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVHYGTAGSSN 140 (345)
Q Consensus 99 g~~Vvv~~~G~G~v~Aa~~~~~li~~f~~~~ii~~GiaGgl~ 140 (345)
+.+|+...-.+--..+...+..++++++|+.+|.+|.+|+-+
T Consensus 33 ~~~v~~~~LPv~~~~~~~~l~~~~~~~~Pd~vl~~G~a~~r~ 74 (209)
T PRK13193 33 KEEVKGVILPVEYEKIEDLIVTKIREMKPILTLGIGVAPGRA 74 (209)
T ss_pred CceEEEEEeCCcHHHHHHHHHHHHHHHCCCEEEEecccCCcC
Confidence 334444333333333455666778888999999999999975
No 54
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=39.54 E-value=61 Score=29.05 Aligned_cols=41 Identities=17% Similarity=0.179 Sum_probs=30.3
Q ss_pred EEEEEEeCC--CChhHHHHHHHHHHHhcCCcEEEEEeeecccC
Q 019168 100 VDVIYVMTG--EQTVNSGITVQILLDAFDIRGVVHYGTAGSSN 140 (345)
Q Consensus 100 ~~Vvv~~~G--~G~v~Aa~~~~~li~~f~~~~ii~~GiaGgl~ 140 (345)
..|-++.|| |+....-.++..+++.|+|++||++|=--+.+
T Consensus 32 i~vrVvgsgaKM~Pe~veaav~~~~e~~~pDfvi~isPNpaaP 74 (277)
T COG1927 32 IEVRVVGSGAKMDPECVEAAVTEMLEEFNPDFVIYISPNPAAP 74 (277)
T ss_pred ceEEEeccccccChHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 345666665 77765566667899999999999998766553
No 55
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=35.33 E-value=86 Score=28.72 Aligned_cols=54 Identities=13% Similarity=0.072 Sum_probs=41.2
Q ss_pred EEEEEeCC--CChhHHHHHHHHHHHhcCCcEEEEEeeecccCC---------CCccccEEEeccc
Q 019168 101 DVIYVMTG--EQTVNSGITVQILLDAFDIRGVVHYGTAGSSNN---------SLSFGDVSVMKYV 154 (345)
Q Consensus 101 ~Vvv~~~G--~G~v~Aa~~~~~li~~f~~~~ii~~GiaGgl~~---------~~~lGDVvV~~~v 154 (345)
.+-++.|| |++-.+..++..+++.|+|+++|.++=-++.+. +..+--|||++.-
T Consensus 33 ~vrv~gsGaKm~pe~~~~~~~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p 97 (277)
T PRK00994 33 DVRVVGSGAKMGPEEVEEVVKKMLEEWKPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAP 97 (277)
T ss_pred eEEEeccCCCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCC
Confidence 45555565 899999988899999999999999998888852 2344567777654
No 56
>COG0799 Uncharacterized homolog of plant Iojap protein [Function unknown]
Probab=32.94 E-value=95 Score=25.06 Aligned_cols=51 Identities=20% Similarity=0.312 Sum_probs=35.7
Q ss_pred EEEEEeCCCChhHHHHHHHHHHHhcCCcEEEEEeeecccCCC---CccccEEEe
Q 019168 101 DVIYVMTGEQTVNSGITVQILLDAFDIRGVVHYGTAGSSNNS---LSFGDVSVM 151 (345)
Q Consensus 101 ~Vvv~~~G~G~v~Aa~~~~~li~~f~~~~ii~~GiaGgl~~~---~~lGDVvV~ 151 (345)
+..++.||.+..+....+..+....+.......++-|.-..+ +..|||||=
T Consensus 35 DyfVIatg~s~rhv~Aiad~i~~~~k~~g~~~~~~EG~~~~~WvliD~GdivVH 88 (115)
T COG0799 35 DYFVIATGNSSRHVKAIADNVKEELKEAGEVPLRIEGLSEGEWVLIDLGDIVVH 88 (115)
T ss_pred cEEEEEEeCchHHHHHHHHHHHHHHHHcCCCcccccCCCcCCEEEEecCcEEEE
Confidence 466777888888877777777777666666677777755443 567777763
No 57
>TIGR00504 pyro_pdase pyroglutamyl-peptidase I. Alternate names include pyroglutamate aminopeptidase, pyrrolidone-carboxylate peptidase, and 5-oxoprolyl-peptidase. It removes pyroglutamate (pyrrolidone-carboxylate, a modified glutamine) that can otherwise block hydrolysis of a polypeptide at the amino end, and so can be extremely useful in the biochemical studies of proteins. The biological role in the various species in which it is found is not fully understood. The enzyme appears to be a homodimer. It does not closely resemble any other peptidases.
Probab=31.01 E-value=1e+02 Score=27.63 Aligned_cols=41 Identities=15% Similarity=0.115 Sum_probs=26.8
Q ss_pred EEEEEEeCCCChhHHHHHHHHHHHhcCCcEEEEEeeecccC
Q 019168 100 VDVIYVMTGEQTVNSGITVQILLDAFDIRGVVHYGTAGSSN 140 (345)
Q Consensus 100 ~~Vvv~~~G~G~v~Aa~~~~~li~~f~~~~ii~~GiaGgl~ 140 (345)
.+|+...-.+--..+...+..+++.++|+.||.+|.+||-.
T Consensus 32 ~~i~~~~lPV~~~~~~~~l~~~l~~~~Pd~vi~~G~a~g~~ 72 (212)
T TIGR00504 32 ATVVAEILPNTFFEAIEALQQAIDEIEPDIVIMLGLAPGRS 72 (212)
T ss_pred cEEEEEEeCCChHHHHHHHHHHHHHHCCCEEEEeccCCCcC
Confidence 44444433332223344566777788999999999999875
No 58
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=27.30 E-value=1.2e+02 Score=27.10 Aligned_cols=42 Identities=14% Similarity=0.163 Sum_probs=26.7
Q ss_pred CEEEEEEeCCCChhHHHHHHHHHHHhcCCcEEEEEeeecccC
Q 019168 99 NVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVHYGTAGSSN 140 (345)
Q Consensus 99 g~~Vvv~~~G~G~v~Aa~~~~~li~~f~~~~ii~~GiaGgl~ 140 (345)
+.+|....-.+-=..+...+..++.+.+|+.||.+|.+|+-.
T Consensus 34 ~~~i~~~~lPV~y~~~~~~l~~~l~~~~Pd~vih~G~a~~~~ 75 (215)
T PRK13197 34 GAEIIKRQLPTVFGKSAEVLKEAIEEVQPDAVICIGQAGGRT 75 (215)
T ss_pred CcEEEEEEECCChHHHHHHHHHHHHHhCCCEEEEeccCCCCC
Confidence 444444433332223334445677778999999999999865
No 59
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=23.33 E-value=1.3e+02 Score=23.09 Aligned_cols=58 Identities=12% Similarity=0.157 Sum_probs=34.4
Q ss_pred EEEEEEe-CCCChhHHHHHHHHHHHhcCCcEEEEEeeecccCCCCccccEEEeccceee
Q 019168 100 VDVIYVM-TGEQTVNSGITVQILLDAFDIRGVVHYGTAGSSNNSLSFGDVSVMKYVAFT 157 (345)
Q Consensus 100 ~~Vvv~~-~G~G~v~Aa~~~~~li~~f~~~~ii~~GiaGgl~~~~~lGDVvV~~~vv~~ 157 (345)
++|++++ +|++..-.+..++..+++.+++.-+....-+.+.....--|+|+...-+.|
T Consensus 4 ~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~ 62 (95)
T TIGR00853 4 TNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVAY 62 (95)
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHHH
Confidence 3554443 477755555566777777788765554444444433344588888865544
No 60
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=23.24 E-value=1.8e+02 Score=25.29 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCCcEEEEEeeecccC
Q 019168 114 SGITVQILLDAFDIRGVVHYGTAGSSN 140 (345)
Q Consensus 114 Aa~~~~~li~~f~~~~ii~~GiaGgl~ 140 (345)
+...+..+++.+.|+.+|.+|.+|+-+
T Consensus 48 ~~~~~~~~~~~~~pd~vlhlG~~~~~~ 74 (194)
T cd00501 48 AVEVLPELIEEHKPDLVIHVGLAGGRS 74 (194)
T ss_pred HHHHHHHHHHHhCCCEEEEecccCCCC
Confidence 334466778888999999999999875
No 61
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=22.92 E-value=1.1e+02 Score=26.12 Aligned_cols=44 Identities=18% Similarity=0.291 Sum_probs=33.7
Q ss_pred ECCEEEEEEeCCCChhHHHHHHHHHHHhcCCcEEEEEeeecccC
Q 019168 97 IKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVHYGTAGSSN 140 (345)
Q Consensus 97 i~g~~Vvv~~~G~G~v~Aa~~~~~li~~f~~~~ii~~GiaGgl~ 140 (345)
+...+++++-.++=+..+.--+..++.+.+.+.|..+|++|+..
T Consensus 37 ~~~yD~i~lG~w~d~G~~d~~~~~fl~~l~~KkV~lF~T~G~~~ 80 (160)
T PF12641_consen 37 LEDYDLIFLGFWIDKGTPDKDMKEFLKKLKGKKVALFGTAGAGP 80 (160)
T ss_pred CCCCCEEEEEcCccCCCCCHHHHHHHHHccCCeEEEEEecCCCC
Confidence 45567888877764445555667788888899999999999874
No 62
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=22.61 E-value=90 Score=23.07 Aligned_cols=54 Identities=13% Similarity=0.010 Sum_probs=33.1
Q ss_pred EEEeCCCChhHHH-HHHHHHHHhcCCcEEEEEeeecccCCCCccccEEEecccee
Q 019168 103 IYVMTGEQTVNSG-ITVQILLDAFDIRGVVHYGTAGSSNNSLSFGDVSVMKYVAF 156 (345)
Q Consensus 103 vv~~~G~G~v~Aa-~~~~~li~~f~~~~ii~~GiaGgl~~~~~lGDVvV~~~vv~ 156 (345)
++|.+|+|....+ ..++..+++.+++.....+.-........--|+++...-+.
T Consensus 4 vvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~~~~~~~~~~~~D~il~~~~i~ 58 (90)
T PF02302_consen 4 VVCGSGIGTSLMVANKIKKALKELGIEVEVSAGSILEVEEIADDADLILLTPQIA 58 (90)
T ss_dssp EEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEETTTHHHHHTT-SEEEEEESSG
T ss_pred EECCChHHHHHHHHHHHHHHHHhccCceEEEEecccccccccCCCcEEEEcCccc
Confidence 3344588876654 77888888888887777776111111123358888776544
No 63
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=21.27 E-value=3.1e+02 Score=20.11 Aligned_cols=54 Identities=20% Similarity=0.113 Sum_probs=25.4
Q ss_pred EEEEe-CCCChhH-HHHHHHHHHHhcCCcEEEEEeeecccCCCCccccEEEeccce
Q 019168 102 VIYVM-TGEQTVN-SGITVQILLDAFDIRGVVHYGTAGSSNNSLSFGDVSVMKYVA 155 (345)
Q Consensus 102 Vvv~~-~G~G~v~-Aa~~~~~li~~f~~~~ii~~GiaGgl~~~~~lGDVvV~~~vv 155 (345)
+++++ +|+|... .+..++..+...++...+..-.-..+.....--|+++++.-+
T Consensus 3 ilivC~~G~~tS~~l~~~i~~~~~~~~i~~~v~~~~~~~~~~~~~~~Dliist~~~ 58 (89)
T cd05566 3 ILVACGTGVATSTVVASKVKELLKENGIDVKVEQCKIAEVPSLLDDADLIVSTTKV 58 (89)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHHCCCceEEEEecHHHhhcccCCCcEEEEcCCc
Confidence 34443 4777642 333344444444444333222222333334456888887544
No 64
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=20.03 E-value=2.1e+02 Score=24.03 Aligned_cols=42 Identities=17% Similarity=0.194 Sum_probs=28.1
Q ss_pred EEECCEEEEEEeCCCChhHHHHHHHHHHHh-cCCcEEEEEeeec
Q 019168 95 GKIKNVDVIYVMTGEQTVNSGITVQILLDA-FDIRGVVHYGTAG 137 (345)
Q Consensus 95 G~i~g~~Vvv~~~G~G~v~Aa~~~~~li~~-f~~~~ii~~GiaG 137 (345)
++-...+|.++...+-.. .+..+.++.+. -+++.||.+|.|.
T Consensus 53 ~sPr~aDvllVtG~vt~~-~~~~l~~~~e~~p~pk~VIA~GsCA 95 (145)
T TIGR01957 53 ASPRQADVMIVAGTVTKK-MAPALRRLYDQMPEPKWVISMGACA 95 (145)
T ss_pred CCCCcceEEEEecCCcHH-HHHHHHHHHHhccCCceEEEeccee
Confidence 444456777776666554 45555555554 3799999999994
Done!