Query 019170
Match_columns 345
No_of_seqs 284 out of 1077
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 11:59:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019170.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019170hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmn_A Homeobox protein TGIF2L 99.8 7.2E-19 2.5E-23 139.1 6.5 64 258-321 7-70 (83)
2 1x2n_A Homeobox protein pknox1 99.7 2.6E-18 8.7E-23 132.1 7.3 66 258-323 7-72 (73)
3 3k2a_A Homeobox protein MEIS2; 99.7 3.6E-18 1.2E-22 130.1 6.5 62 262-323 2-63 (67)
4 2lk2_A Homeobox protein TGIF1; 99.7 1.2E-18 4.1E-23 140.7 2.8 58 263-320 10-67 (89)
5 1du6_A PBX1, homeobox protein 99.7 7.7E-18 2.6E-22 126.2 6.8 62 258-319 3-64 (64)
6 1k61_A Mating-type protein alp 99.7 1.7E-17 5.7E-22 122.8 7.2 59 261-319 1-59 (60)
7 1puf_B PRE-B-cell leukemia tra 99.7 2.4E-17 8.1E-22 126.7 7.4 65 259-323 2-66 (73)
8 1le8_B Mating-type protein alp 99.7 3.2E-17 1.1E-21 129.4 7.8 64 259-322 3-66 (83)
9 1b72_B Protein (PBX1); homeodo 99.7 2.1E-17 7.1E-22 130.8 4.8 64 259-322 2-65 (87)
10 1mnm_C Protein (MAT alpha-2 tr 99.7 5.8E-17 2E-21 128.7 7.2 61 258-318 27-87 (87)
11 1akh_A Protein (mating-type pr 99.6 1.8E-15 6.3E-20 112.0 6.3 57 258-317 5-61 (61)
12 2ecc_A Homeobox and leucine zi 99.6 2E-15 6.8E-20 118.5 6.9 60 260-322 5-64 (76)
13 2cra_A Homeobox protein HOX-B1 99.6 4.9E-15 1.7E-19 113.0 7.8 63 258-323 7-69 (70)
14 2dmu_A Homeobox protein goosec 99.6 3.8E-15 1.3E-19 113.5 7.0 63 258-323 7-69 (70)
15 2djn_A Homeobox protein DLX-5; 99.6 4.5E-15 1.5E-19 113.2 6.6 63 258-323 7-69 (70)
16 2hdd_A Protein (engrailed home 99.6 5E-15 1.7E-19 110.0 6.7 60 257-319 2-61 (61)
17 1bw5_A ISL-1HD, insulin gene e 99.6 6.4E-15 2.2E-19 110.9 7.4 60 258-320 3-62 (66)
18 2da2_A Alpha-fetoprotein enhan 99.6 6.7E-15 2.3E-19 111.9 7.4 63 258-323 7-69 (70)
19 2e1o_A Homeobox protein PRH; D 99.5 5.9E-15 2E-19 112.5 6.7 63 258-323 7-69 (70)
20 2da3_A Alpha-fetoprotein enhan 99.5 7.8E-15 2.7E-19 114.0 6.9 63 258-323 17-79 (80)
21 2dmt_A Homeobox protein BARH-l 99.5 1.3E-14 4.4E-19 113.5 7.8 63 258-323 17-79 (80)
22 1ig7_A Homeotic protein MSX-1; 99.5 1.1E-14 3.8E-19 106.8 6.4 57 259-318 1-57 (58)
23 2da1_A Alpha-fetoprotein enhan 99.5 1.1E-14 3.7E-19 110.8 6.5 62 258-322 7-68 (70)
24 2h1k_A IPF-1, pancreatic and d 99.5 1.3E-14 4.5E-19 108.4 6.5 59 258-319 3-61 (63)
25 1jgg_A Segmentation protein EV 99.5 1.4E-14 4.8E-19 107.2 6.5 57 259-318 2-58 (60)
26 1ahd_P Antennapedia protein mu 99.5 1.2E-14 4.1E-19 110.5 5.7 62 258-322 2-63 (68)
27 2vi6_A Homeobox protein nanog; 99.5 2.1E-14 7.3E-19 106.8 6.9 59 258-319 3-61 (62)
28 3rkq_A Homeobox protein NKX-2. 99.5 1.9E-14 6.5E-19 104.9 5.9 57 258-317 2-58 (58)
29 2k40_A Homeobox expressed in E 99.5 2.5E-14 8.5E-19 108.0 6.5 60 259-321 2-61 (67)
30 2da4_A Hypothetical protein DK 99.5 8.2E-15 2.8E-19 114.4 3.8 64 258-321 8-72 (80)
31 1wh5_A ZF-HD homeobox family p 99.5 2.8E-14 9.4E-19 112.3 6.7 62 258-319 17-79 (80)
32 2l7z_A Homeobox protein HOX-A1 99.5 4.6E-14 1.6E-18 108.6 7.5 61 258-321 7-67 (73)
33 1fjl_A Paired protein; DNA-bin 99.5 2.9E-14 1E-18 111.5 6.2 59 258-319 18-76 (81)
34 2dmq_A LIM/homeobox protein LH 99.5 3E-14 1E-18 110.9 6.3 59 258-319 7-65 (80)
35 1ftt_A TTF-1 HD, thyroid trans 99.5 3.2E-14 1.1E-18 108.0 6.1 61 258-321 2-62 (68)
36 2dms_A Homeobox protein OTX2; 99.5 6E-14 2.1E-18 109.5 7.0 61 258-321 7-67 (80)
37 3a02_A Homeobox protein arista 99.5 6.1E-14 2.1E-18 103.7 6.4 55 262-319 3-57 (60)
38 1nk2_P Homeobox protein VND; h 99.5 6E-14 2.1E-18 108.9 6.3 59 258-319 9-67 (77)
39 2dn0_A Zinc fingers and homeob 99.5 9.3E-14 3.2E-18 107.5 7.3 60 259-321 9-68 (76)
40 1zq3_P PRD-4, homeotic bicoid 99.5 4.6E-14 1.6E-18 107.1 5.4 59 258-319 2-60 (68)
41 2cue_A Paired box protein PAX6 99.5 5.2E-14 1.8E-18 110.0 5.3 59 258-319 7-65 (80)
42 1yz8_P Pituitary homeobox 2; D 99.5 2.3E-14 7.8E-19 108.7 3.1 61 258-321 3-63 (68)
43 2kt0_A Nanog, homeobox protein 99.4 1E-13 3.6E-18 108.8 6.9 59 258-319 22-80 (84)
44 1puf_A HOX-1.7, homeobox prote 99.4 1.1E-13 3.6E-18 107.5 6.5 59 258-319 13-71 (77)
45 1b8i_A Ultrabithorax, protein 99.4 1.3E-13 4.4E-18 108.2 6.8 60 258-320 20-79 (81)
46 2hi3_A Homeodomain-only protei 99.4 8.2E-14 2.8E-18 107.1 5.5 59 259-320 3-62 (73)
47 2m0c_A Homeobox protein arista 99.4 1.6E-13 5.3E-18 105.2 6.9 60 258-320 9-68 (75)
48 3a03_A T-cell leukemia homeobo 99.4 1E-13 3.6E-18 101.3 5.7 54 263-319 2-55 (56)
49 2ecb_A Zinc fingers and homeob 99.4 2.5E-13 8.6E-18 109.4 8.4 55 263-320 16-70 (89)
50 1uhs_A HOP, homeodomain only p 99.4 1.1E-13 3.9E-18 105.9 5.9 58 260-320 3-61 (72)
51 2ly9_A Zinc fingers and homeob 99.4 3.1E-13 1.1E-17 103.7 8.0 62 259-323 7-68 (74)
52 2da5_A Zinc fingers and homeob 99.4 2.3E-13 7.8E-18 105.3 7.2 59 260-321 9-67 (75)
53 3a01_A Homeodomain-containing 99.4 1.4E-13 4.7E-18 110.9 5.7 60 258-320 17-76 (93)
54 2dmp_A Zinc fingers and homeob 99.4 4.6E-13 1.6E-17 107.1 8.2 59 262-323 17-75 (89)
55 2d5v_A Hepatocyte nuclear fact 99.4 2.7E-13 9.2E-18 118.9 7.1 62 257-321 96-157 (164)
56 2cuf_A FLJ21616 protein; homeo 99.4 1.9E-13 6.6E-18 110.1 5.5 59 258-319 7-80 (95)
57 2r5y_A Homeotic protein sex co 99.4 2.8E-13 9.6E-18 107.6 6.0 59 258-319 28-86 (88)
58 3d1n_I POU domain, class 6, tr 99.4 3.4E-13 1.2E-17 117.1 6.8 58 258-318 93-150 (151)
59 3nar_A ZHX1, zinc fingers and 99.4 5.7E-13 2E-17 107.6 7.3 60 258-320 25-84 (96)
60 3nau_A Zinc fingers and homeob 99.4 3E-13 1E-17 103.5 5.1 51 265-318 11-61 (66)
61 1b72_A Protein (homeobox prote 99.4 3.7E-13 1.3E-17 108.8 5.5 59 258-319 34-92 (97)
62 1wh7_A ZF-HD homeobox family p 99.4 4.4E-13 1.5E-17 105.6 5.6 61 258-319 17-79 (80)
63 2e19_A Transcription factor 8; 99.3 1.4E-12 4.8E-17 98.5 6.9 57 261-320 6-62 (64)
64 2cqx_A LAG1 longevity assuranc 99.3 7.3E-13 2.5E-17 102.2 5.4 61 260-323 10-71 (72)
65 1e3o_C Octamer-binding transcr 99.3 1.4E-12 4.9E-17 114.4 7.2 59 258-319 101-159 (160)
66 1au7_A Protein PIT-1, GHF-1; c 99.3 1.9E-12 6.4E-17 112.3 7.2 59 258-319 87-145 (146)
67 2xsd_C POU domain, class 3, tr 99.3 1.9E-12 6.4E-17 114.4 6.8 62 257-321 98-159 (164)
68 2l9r_A Homeobox protein NKX-3. 99.3 4.8E-12 1.7E-16 97.2 7.1 55 264-321 10-64 (69)
69 1wi3_A DNA-binding protein SAT 99.3 6.4E-12 2.2E-16 96.9 7.6 65 257-323 6-70 (71)
70 1x2m_A LAG1 longevity assuranc 99.3 3.5E-12 1.2E-16 97.0 5.8 55 267-323 9-63 (64)
71 1lfb_A Liver transcription fac 99.3 3.7E-12 1.3E-16 104.2 5.8 62 256-320 7-89 (99)
72 2da6_A Hepatocyte nuclear fact 99.2 5.2E-12 1.8E-16 104.2 5.5 59 258-319 6-85 (102)
73 3l1p_A POU domain, class 5, tr 99.2 3.6E-12 1.2E-16 111.3 4.1 60 257-319 95-154 (155)
74 2h8r_A Hepatocyte nuclear fact 99.1 1.2E-10 4.1E-15 107.7 6.2 57 258-317 142-219 (221)
75 1mh3_A Maltose binding-A1 home 99.1 9.7E-11 3.3E-15 112.5 5.6 55 260-317 367-421 (421)
76 1ic8_A Hepatocyte nuclear fact 99.0 7E-11 2.4E-15 107.3 3.7 58 258-318 115-193 (194)
77 2da7_A Zinc finger homeobox pr 98.9 9.9E-10 3.4E-14 85.0 6.0 48 267-317 14-61 (71)
78 2nzz_A Penetratin conjugated G 96.5 0.00046 1.6E-08 47.0 0.0 18 303-320 1-18 (37)
79 2ys9_A Homeobox and leucine zi 94.9 0.016 5.6E-07 44.5 3.1 44 265-311 13-56 (70)
80 1hlv_A CENP-B, major centromer 77.3 5.3 0.00018 31.9 6.4 50 261-316 4-53 (131)
81 2glo_A Brinker CG9653-PA; prot 71.2 6.3 0.00021 27.7 4.7 48 262-313 3-50 (59)
82 1tc3_C Protein (TC3 transposas 61.5 18 0.00061 22.8 5.2 42 263-312 4-45 (51)
83 2o8x_A Probable RNA polymerase 61.1 5.3 0.00018 28.1 2.6 49 264-320 15-63 (70)
84 3hug_A RNA polymerase sigma fa 60.5 4.6 0.00016 30.7 2.3 47 264-318 37-83 (92)
85 2elh_A CG11849-PA, LD40883P; s 58.9 22 0.00074 26.8 6.0 45 261-313 19-63 (87)
86 2p7v_B Sigma-70, RNA polymeras 52.4 11 0.00037 26.9 3.1 54 264-321 5-58 (68)
87 3mzy_A RNA polymerase sigma-H 49.6 8.4 0.00029 30.8 2.3 46 264-318 109-154 (164)
88 1ku3_A Sigma factor SIGA; heli 49.4 12 0.00041 27.0 3.0 52 264-319 10-62 (73)
89 3c57_A Two component transcrip 49.2 18 0.0006 27.8 4.1 51 264-323 27-77 (95)
90 1tty_A Sigma-A, RNA polymerase 48.4 12 0.00043 28.1 3.0 53 264-320 18-70 (87)
91 2rnj_A Response regulator prot 47.8 29 0.001 26.1 5.1 49 264-321 29-77 (91)
92 2jqq_A Conserved oligomeric go 45.7 23 0.00078 32.0 4.7 38 140-179 83-120 (204)
93 2k27_A Paired box protein PAX- 45.3 69 0.0023 26.2 7.4 62 262-326 81-149 (159)
94 1fse_A GERE; helix-turn-helix 43.7 18 0.00062 25.5 3.1 50 262-320 9-58 (74)
95 1x3u_A Transcriptional regulat 43.7 12 0.0004 27.0 2.1 47 265-320 17-63 (79)
96 1je8_A Nitrate/nitrite respons 43.3 15 0.00052 27.4 2.8 48 264-320 21-68 (82)
97 1iuf_A Centromere ABP1 protein 43.2 27 0.00093 28.9 4.6 53 259-314 6-62 (144)
98 3lsg_A Two-component response 42.0 41 0.0014 25.4 5.2 41 269-312 3-43 (103)
99 3swk_A Vimentin; cytoskeleton, 41.3 79 0.0027 24.5 6.7 48 131-178 20-76 (86)
100 1s7o_A Hypothetical UPF0122 pr 41.1 17 0.00059 29.2 2.9 47 264-318 22-68 (113)
101 1or7_A Sigma-24, RNA polymeras 40.2 14 0.00046 30.8 2.2 47 265-319 141-187 (194)
102 1p4w_A RCSB; solution structur 39.5 39 0.0013 26.4 4.7 50 262-320 32-81 (99)
103 1rp3_A RNA polymerase sigma fa 38.9 15 0.00051 31.3 2.4 47 264-318 187-233 (239)
104 2xi8_A Putative transcription 38.6 16 0.00055 24.8 2.1 23 291-313 17-39 (66)
105 2r1j_L Repressor protein C2; p 38.4 16 0.00056 24.9 2.1 23 291-313 21-43 (68)
106 3bd1_A CRO protein; transcript 38.3 17 0.00059 26.3 2.3 23 291-313 14-36 (79)
107 2q1z_A RPOE, ECF SIGE; ECF sig 37.3 9.6 0.00033 31.5 0.8 47 264-318 135-181 (184)
108 1zug_A Phage 434 CRO protein; 37.1 17 0.00058 25.1 2.0 23 291-313 19-41 (71)
109 2jn6_A Protein CGL2762, transp 36.4 42 0.0014 25.3 4.4 46 263-314 4-49 (97)
110 1jko_C HIN recombinase, DNA-in 35.9 45 0.0015 21.3 4.0 42 263-312 4-45 (52)
111 1hlv_A CENP-B, major centromer 35.4 81 0.0028 24.7 6.1 58 258-316 66-130 (131)
112 3bs3_A Putative DNA-binding pr 34.5 21 0.00071 25.1 2.2 23 291-313 26-48 (76)
113 1adr_A P22 C2 repressor; trans 34.2 21 0.0007 25.0 2.1 23 291-313 21-43 (76)
114 1xsv_A Hypothetical UPF0122 pr 33.7 20 0.00068 28.7 2.2 48 264-319 25-72 (113)
115 2b5a_A C.BCLI; helix-turn-heli 33.1 22 0.00075 25.0 2.1 22 292-313 27-48 (77)
116 2jpc_A SSRB; DNA binding prote 32.8 30 0.001 23.5 2.8 29 292-320 17-45 (61)
117 1r69_A Repressor protein CI; g 32.8 22 0.00077 24.3 2.1 23 291-313 17-39 (69)
118 3b7h_A Prophage LP1 protein 11 31.4 24 0.00084 24.8 2.1 22 292-313 24-45 (78)
119 3omt_A Uncharacterized protein 30.6 23 0.00079 25.0 1.9 21 292-312 25-45 (73)
120 2wiu_B HTH-type transcriptiona 30.5 31 0.0011 24.9 2.6 22 292-313 29-50 (88)
121 1u78_A TC3 transposase, transp 30.5 69 0.0023 25.0 4.9 52 262-320 58-112 (141)
122 1y7y_A C.AHDI; helix-turn-heli 30.1 27 0.00091 24.3 2.1 21 292-312 30-50 (74)
123 2rn7_A IS629 ORFA; helix, all 29.6 97 0.0033 23.6 5.5 52 262-314 4-56 (108)
124 3kz3_A Repressor protein CI; f 29.2 24 0.00083 25.4 1.8 22 292-313 29-50 (80)
125 2a6c_A Helix-turn-helix motif; 29.2 29 0.001 25.4 2.3 22 292-313 35-56 (83)
126 3clo_A Transcriptional regulat 27.2 47 0.0016 29.6 3.7 50 263-321 196-245 (258)
127 1rzs_A Antirepressor, regulato 26.8 31 0.001 24.3 1.9 18 292-309 14-31 (61)
128 2kpj_A SOS-response transcript 26.8 32 0.0011 25.7 2.1 22 292-313 26-47 (94)
129 1xc0_A Pardaxin P-4, PA4; BEND 26.7 60 0.002 20.8 3.0 23 73-95 5-27 (33)
130 2ef8_A C.ECOT38IS, putative tr 25.7 35 0.0012 24.3 2.2 22 292-313 27-48 (84)
131 2k9q_A Uncharacterized protein 25.7 32 0.0011 24.5 1.9 22 292-313 19-40 (77)
132 2ict_A Antitoxin HIGA; helix-t 25.5 35 0.0012 25.3 2.2 23 291-313 24-46 (94)
133 3mn2_A Probable ARAC family tr 25.3 1.1E+02 0.0038 23.1 5.1 40 269-312 3-42 (108)
134 1l0o_C Sigma factor; bergerat 25.2 15 0.00051 31.2 0.0 46 264-317 198-243 (243)
135 1b72_A Protein (homeobox prote 24.1 17 0.0006 28.2 0.2 25 297-321 2-26 (97)
136 3t72_q RNA polymerase sigma fa 23.8 49 0.0017 26.0 2.8 53 264-320 19-71 (99)
137 3f6w_A XRE-family like protein 23.6 37 0.0013 24.3 1.9 22 292-313 31-52 (83)
138 1lmb_3 Protein (lambda repress 23.6 37 0.0013 24.9 1.9 21 292-312 34-54 (92)
139 2vn2_A DNAD, chromosome replic 23.3 1.2E+02 0.0041 24.4 5.2 61 252-315 17-78 (128)
140 1neq_A DNA-binding protein NER 22.6 42 0.0014 24.8 2.0 19 292-310 26-44 (74)
141 3oio_A Transcriptional regulat 22.2 1.1E+02 0.0039 23.3 4.7 39 269-311 8-46 (113)
142 2l49_A C protein; P2 bacteriop 22.2 45 0.0015 24.7 2.2 22 292-313 21-42 (99)
143 2w9j_A Signal recognition part 22.0 47 0.0016 26.3 2.3 22 131-152 64-85 (91)
144 3ol1_A Vimentin; structural ge 21.9 2.3E+02 0.008 22.9 6.7 48 131-178 40-96 (119)
145 2x48_A CAG38821; archeal virus 21.2 49 0.0017 22.1 2.0 21 291-311 34-54 (55)
146 1e8o_B SRP14, signal recogniti 21.1 46 0.0016 26.9 2.1 18 131-148 72-89 (106)
147 2lv7_A Calcium-binding protein 20.9 2.3E+02 0.0077 21.5 6.1 52 259-310 24-79 (100)
148 3t76_A VANU, transcriptional r 20.6 48 0.0016 25.3 2.1 21 292-312 41-61 (88)
149 3s8q_A R-M controller protein; 20.5 47 0.0016 23.8 1.9 22 292-313 28-49 (82)
150 2v79_A DNA replication protein 20.3 54 0.0018 27.2 2.5 51 263-316 28-79 (135)
151 1x57_A Endothelial differentia 20.2 50 0.0017 24.3 2.1 22 292-313 30-51 (91)
No 1
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.76 E-value=7.2e-19 Score=139.12 Aligned_cols=64 Identities=41% Similarity=0.731 Sum_probs=60.3
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCC
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~ 321 (345)
++|+|+.|++.++.+|+.||..|..+|||+.++|..||..|||+..||.+||+|+|+|.|+...
T Consensus 7 ~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~ 70 (83)
T 2dmn_A 7 GKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDML 70 (83)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHH
Confidence 5677889999999999999999999999999999999999999999999999999999998644
No 2
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=2.6e-18 Score=132.08 Aligned_cols=66 Identities=42% Similarity=0.855 Sum_probs=61.8
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCCC
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~s~ 323 (345)
.+++|+.|++.++.+|+.||..|..+|||+..+|..||..|||+..||.+||+|+|+|.|++...+
T Consensus 7 ~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 72 (73)
T 1x2n_A 7 GKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPSS 72 (73)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccccc
Confidence 466788999999999999999999999999999999999999999999999999999999987654
No 3
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=3.6e-18 Score=130.12 Aligned_cols=62 Identities=42% Similarity=0.818 Sum_probs=54.1
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCCC
Q 019170 262 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (345)
Q Consensus 262 r~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~s~ 323 (345)
.++||++++.+|+.||..|..+|||+..+|..||..|||+..||.+||+|+|+|.|++....
T Consensus 2 ~g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 63 (67)
T 3k2a_A 2 SGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQ 63 (67)
T ss_dssp ----CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC---
T ss_pred CCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999986654
No 4
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.72 E-value=1.2e-18 Score=140.66 Aligned_cols=58 Identities=38% Similarity=0.656 Sum_probs=55.5
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019170 263 GKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 263 ~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~ 320 (345)
.-||++++.+|+.||.+|..+|||++++|..||..|||+.+||+|||+|+|+|.|++.
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~ 67 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDM 67 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHH
Confidence 4699999999999999999999999999999999999999999999999999999753
No 5
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=7.7e-18 Score=126.15 Aligned_cols=62 Identities=31% Similarity=0.588 Sum_probs=58.6
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~ 319 (345)
.+++|+.|+..+..+|+.||..|..+|||+..++..||..+||+..||.+||+|+|+|.|++
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~ 64 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKN 64 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSCC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhccC
Confidence 45678899999999999999999999999999999999999999999999999999999874
No 6
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.71 E-value=1.7e-17 Score=122.85 Aligned_cols=59 Identities=24% Similarity=0.527 Sum_probs=56.4
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019170 261 RAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 261 kr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~ 319 (345)
|++.|++.+..+|+.||..|.++|||+..++..||..+||+..||.+||+|+|+|.|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 46789999999999999999999999999999999999999999999999999999875
No 7
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.70 E-value=2.4e-17 Score=126.65 Aligned_cols=65 Identities=31% Similarity=0.580 Sum_probs=60.6
Q ss_pred hcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCCC
Q 019170 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (345)
Q Consensus 259 krkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~s~ 323 (345)
+|+|+.|++.++.+|+.||..|..+|||+..++..||..+||+..||.+||+|+|+|.|+.....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 56788999999999999999999999999999999999999999999999999999999876543
No 8
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.69 E-value=3.2e-17 Score=129.41 Aligned_cols=64 Identities=20% Similarity=0.436 Sum_probs=58.1
Q ss_pred hcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCC
Q 019170 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 322 (345)
Q Consensus 259 krkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~s 322 (345)
++++..|+..++.+|+.||..|..+|||+..++..||..+||+..||.+||+|+|+|.|+...+
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~~ 66 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIA 66 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccccC
Confidence 4455669999999999999999999999999999999999999999999999999999987543
No 9
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.68 E-value=2.1e-17 Score=130.82 Aligned_cols=64 Identities=31% Similarity=0.604 Sum_probs=59.5
Q ss_pred hcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCC
Q 019170 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 322 (345)
Q Consensus 259 krkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~s 322 (345)
+|+|+.|+..++.+|+.||..|..+|||+..++..||..+||+..||.+||+|+|+|.|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 5778899999999999999999999999999999999999999999999999999999986543
No 10
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.67 E-value=5.8e-17 Score=128.70 Aligned_cols=61 Identities=23% Similarity=0.516 Sum_probs=57.4
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 318 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk 318 (345)
++|+|+.|+..++.+|+.||..|+.+|||+..+|..||..+||+..||.+||+|+|+|.|.
T Consensus 27 ~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 27 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 5566789999999999999999999999999999999999999999999999999999863
No 11
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.58 E-value=1.8e-15 Score=112.01 Aligned_cols=57 Identities=18% Similarity=0.352 Sum_probs=48.1
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcc
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 317 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~k 317 (345)
.+|+|+.|+..+..+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.|
T Consensus 5 ~rr~Rt~ft~~q~~~Le~~f~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 5 SPKGKSSISPQARAFLEEVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp -------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 4566789999999999999999 79999999999999999999999999999999875
No 12
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.58 E-value=2e-15 Score=118.53 Aligned_cols=60 Identities=25% Similarity=0.395 Sum_probs=55.9
Q ss_pred cCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCC
Q 019170 260 RRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 322 (345)
Q Consensus 260 rkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~s 322 (345)
.++++|+++++.+|+.||.. +|||+..++..||..|||+..||.+||+|+|.|.|+....
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~---~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l~ 64 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQ---CQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQLK 64 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHHH
Confidence 46778999999999999999 8999999999999999999999999999999999986543
No 13
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.57 E-value=4.9e-15 Score=112.97 Aligned_cols=63 Identities=21% Similarity=0.349 Sum_probs=58.6
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCCC
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~s~ 323 (345)
.+|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..+++
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 69 (70)
T 2cra_A 7 GRKKRIPYSKGQLRELEREYAA---NKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGPSS 69 (70)
T ss_dssp CCCSCCCSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCTTC
T ss_pred CCCCCCcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCCCC
Confidence 4667889999999999999999 89999999999999999999999999999999999977654
No 14
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=3.8e-15 Score=113.46 Aligned_cols=63 Identities=21% Similarity=0.413 Sum_probs=58.6
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCCC
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~s~ 323 (345)
.+|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..+++
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~~~ 69 (70)
T 2dmu_A 7 GRRHRTIFTDEQLEALENLFQE---TKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGPSS 69 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTSTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCCCC
Confidence 5677889999999999999999 89999999999999999999999999999999999876654
No 15
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=4.5e-15 Score=113.17 Aligned_cols=63 Identities=22% Similarity=0.334 Sum_probs=58.6
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCCC
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~s~ 323 (345)
.+|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..+++
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ss 69 (70)
T 2djn_A 7 GRKPRTIYSSFQLAALQRRFQK---TQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGPSS 69 (70)
T ss_dssp CCCSSCSSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCCCC
Confidence 4667889999999999999988 89999999999999999999999999999999999987654
No 16
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.56 E-value=5e-15 Score=109.95 Aligned_cols=60 Identities=28% Similarity=0.371 Sum_probs=53.1
Q ss_pred hhhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019170 257 LRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 257 ~kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~ 319 (345)
.++|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREFNE---NRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKKS 61 (61)
T ss_dssp -----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHhhhhccccccC
Confidence 35677889999999999999999 8999999999999999999999999999999998873
No 17
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.56 E-value=6.4e-15 Score=110.95 Aligned_cols=60 Identities=27% Similarity=0.381 Sum_probs=56.7
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~ 320 (345)
++|+|+.|+..+..+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 3 TTRVRTVLNEKQLHTLRTCYAA---NPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 5677889999999999999999 89999999999999999999999999999999998865
No 18
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.55 E-value=6.7e-15 Score=111.91 Aligned_cols=63 Identities=21% Similarity=0.410 Sum_probs=58.4
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCCC
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~s~ 323 (345)
.+|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...++
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (70)
T 2da2_A 7 GRSSRTRFTDYQLRVLQDFFDA---NAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPSS 69 (70)
T ss_dssp SCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhccccC
Confidence 4667889999999999999999 89999999999999999999999999999999999876554
No 19
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=5.9e-15 Score=112.50 Aligned_cols=63 Identities=25% Similarity=0.392 Sum_probs=58.3
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCCC
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~s~ 323 (345)
.+++|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..++.
T Consensus 7 ~~r~R~~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~~s 69 (70)
T 2e1o_A 7 GKGGQVRFSNDQTIELEKKFET---QKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGPSS 69 (70)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCCCC
Confidence 4567889999999999999998 89999999999999999999999999999999999876653
No 20
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.54 E-value=7.8e-15 Score=113.96 Aligned_cols=63 Identities=27% Similarity=0.427 Sum_probs=58.5
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCCC
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~s~ 323 (345)
++|+|+.|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...+.
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~f~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~s 79 (80)
T 2da3_A 17 DKRLRTTITPEQLEILYQKYLL---DSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGPSS 79 (80)
T ss_dssp CTTCCSSCCTTTHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhccCC
Confidence 5667889999999999999999 89999999999999999999999999999999999976553
No 21
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.3e-14 Score=113.46 Aligned_cols=63 Identities=22% Similarity=0.325 Sum_probs=58.6
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCCC
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~s~ 323 (345)
.+|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...+.
T Consensus 17 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ss 79 (80)
T 2dmt_A 17 GRRSRTVFTELQLMGLEKRFEK---QKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGPSS 79 (80)
T ss_dssp CCCSCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccCCC
Confidence 4567789999999999999999 89999999999999999999999999999999999987654
No 22
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.53 E-value=1.1e-14 Score=106.76 Aligned_cols=57 Identities=16% Similarity=0.258 Sum_probs=54.0
Q ss_pred hcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019170 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 318 (345)
Q Consensus 259 krkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk 318 (345)
+|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQ---KQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 467789999999999999999 899999999999999999999999999999999875
No 23
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.53 E-value=1.1e-14 Score=110.75 Aligned_cols=62 Identities=26% Similarity=0.467 Sum_probs=57.4
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCC
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 322 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~s 322 (345)
.+|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+....
T Consensus 7 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da1_A 7 GKRPRTRITDDQLRVLRQYFDI---NNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGPS 68 (70)
T ss_dssp CCSCSCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhccc
Confidence 4667889999999999999999 8999999999999999999999999999999999986543
No 24
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.52 E-value=1.3e-14 Score=108.44 Aligned_cols=59 Identities=20% Similarity=0.228 Sum_probs=54.6
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~ 319 (345)
.+|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLF---NKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 5677889999999999999999 8999999999999999999999999999999998874
No 25
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.52 E-value=1.4e-14 Score=107.15 Aligned_cols=57 Identities=19% Similarity=0.319 Sum_probs=53.7
Q ss_pred hcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019170 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 318 (345)
Q Consensus 259 krkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk 318 (345)
+|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 58 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYK---ENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 58 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhc
Confidence 467889999999999999999 899999999999999999999999999999999876
No 26
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.51 E-value=1.2e-14 Score=110.45 Aligned_cols=62 Identities=24% Similarity=0.272 Sum_probs=57.7
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCC
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPS 322 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~s 322 (345)
++|+|+.|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~ 63 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKT 63 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHH---CSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCcCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhccc
Confidence 5678889999999999999999 8999999999999999999999999999999999886543
No 27
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.51 E-value=2.1e-14 Score=106.83 Aligned_cols=59 Identities=20% Similarity=0.272 Sum_probs=52.2
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~ 319 (345)
++|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 3 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 3 KQKMRTVFSQAQLCALKDRFQK---QKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp -----CCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 4567889999999999999999 8999999999999999999999999999999999873
No 28
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.50 E-value=1.9e-14 Score=104.88 Aligned_cols=57 Identities=18% Similarity=0.276 Sum_probs=53.7
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcc
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 317 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~k 317 (345)
++|+|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQ---QRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 5677889999999999999987 89999999999999999999999999999999865
No 29
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.50 E-value=2.5e-14 Score=108.02 Aligned_cols=60 Identities=22% Similarity=0.340 Sum_probs=56.1
Q ss_pred hcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCC
Q 019170 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (345)
Q Consensus 259 krkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~ 321 (345)
+|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRV---NCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 567889999999999999988 999999999999999999999999999999999988653
No 30
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=8.2e-15 Score=114.42 Aligned_cols=64 Identities=13% Similarity=0.225 Sum_probs=57.5
Q ss_pred hhcCCCCCChhHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCC
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSH-AKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H-~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~ 321 (345)
++|+|+.|+.+++.+|+.||..+ ..+|||+..++..||..+||+..||.+||+|+|+|.++...
T Consensus 8 ~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~~ 72 (80)
T 2da4_A 8 ALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGI 72 (80)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhccC
Confidence 45677899999999999999984 44499999999999999999999999999999999988543
No 31
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.49 E-value=2.8e-14 Score=112.29 Aligned_cols=62 Identities=21% Similarity=0.268 Sum_probs=57.5
Q ss_pred hhcCCCCCChhHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLS-HAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~-H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~ 319 (345)
+||+|+.|+.+++..|+.+|.. |+.+|||+..++..||..+||++.||.+||+|+|.+.++.
T Consensus 17 ~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~~ 79 (80)
T 1wh5_A 17 RKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPSS 79 (80)
T ss_dssp SCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSCC
T ss_pred CCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCCC
Confidence 5677889999999999999996 7889999999999999999999999999999999998763
No 32
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.49 E-value=4.6e-14 Score=108.60 Aligned_cols=61 Identities=16% Similarity=0.265 Sum_probs=56.9
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCC
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~ 321 (345)
.+|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (73)
T 2l7z_A 7 GRKKRVPYTKVQLKELEREYAT---NKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 67 (73)
T ss_dssp CCCCCCCSCHHHHHHHHHHHHH---TSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCHHHHHHHHHHHhh---CCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhc
Confidence 4667789999999999999999 899999999999999999999999999999999998654
No 33
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.49 E-value=2.9e-14 Score=111.53 Aligned_cols=59 Identities=24% Similarity=0.353 Sum_probs=55.5
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~ 319 (345)
++|+|+.|+..+..+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 18 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~ 76 (81)
T 1fjl_A 18 QRRSRTTFSASQLDELERAFER---TQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQ 76 (81)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhh
Confidence 5667789999999999999999 8999999999999999999999999999999998874
No 34
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=3e-14 Score=110.90 Aligned_cols=59 Identities=24% Similarity=0.377 Sum_probs=55.8
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~ 319 (345)
.+|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (80)
T 2dmq_A 7 GKRMRTSFKHHQLRTMKSYFAI---NHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRN 65 (80)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHH
Confidence 5677889999999999999999 8999999999999999999999999999999999874
No 35
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.48 E-value=3.2e-14 Score=108.00 Aligned_cols=61 Identities=18% Similarity=0.266 Sum_probs=57.0
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCC
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~ 321 (345)
++|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQ---QKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCccCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 5677889999999999999999 899999999999999999999999999999999987653
No 36
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.47 E-value=6e-14 Score=109.49 Aligned_cols=61 Identities=16% Similarity=0.307 Sum_probs=56.5
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCC
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~ 321 (345)
.+|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 7 GRRERTTFTRAQLDVLEALFAK---TRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 4567889999999999999999 899999999999999999999999999999999987543
No 37
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.47 E-value=6.1e-14 Score=103.70 Aligned_cols=55 Identities=20% Similarity=0.259 Sum_probs=50.1
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019170 262 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 262 r~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~ 319 (345)
|..|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 3 Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 57 (60)
T 3a02_A 3 HMTFTSFQLEELEKAFSR---THYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57 (60)
T ss_dssp --CCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC--
T ss_pred CcccCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhh
Confidence 578999999999999998 8999999999999999999999999999999999874
No 38
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.46 E-value=6e-14 Score=108.86 Aligned_cols=59 Identities=20% Similarity=0.306 Sum_probs=54.9
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~ 319 (345)
++|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 9 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~ 67 (77)
T 1nk2_P 9 KRKRRVLFTKAQTYELERRFRQ---QRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 67 (77)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhh
Confidence 4566779999999999999999 8999999999999999999999999999999998863
No 39
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=9.3e-14 Score=107.55 Aligned_cols=60 Identities=20% Similarity=0.348 Sum_probs=55.6
Q ss_pred hcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCC
Q 019170 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (345)
Q Consensus 259 krkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~ 321 (345)
.+.|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCR---NQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---SSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCS
T ss_pred CCCCccCCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcc
Confidence 345788999999999999999 899999999999999999999999999999999998654
No 40
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.46 E-value=4.6e-14 Score=107.08 Aligned_cols=59 Identities=24% Similarity=0.339 Sum_probs=55.6
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~ 319 (345)
.+|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~ 60 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQ---GRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQ 60 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHH
Confidence 4677889999999999999988 9999999999999999999999999999999999874
No 41
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.45 E-value=5.2e-14 Score=109.98 Aligned_cols=59 Identities=20% Similarity=0.316 Sum_probs=55.7
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~ 319 (345)
.+|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 7 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 65 (80)
T 2cue_A 7 GQRNRTSFTQEQIEALEKEFER---THYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRRE 65 (80)
T ss_dssp SCCCCCCSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHH
Confidence 5677889999999999999988 9999999999999999999999999999999999874
No 42
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.45 E-value=2.3e-14 Score=108.65 Aligned_cols=61 Identities=18% Similarity=0.320 Sum_probs=56.5
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCC
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~ 321 (345)
++|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++...
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 3 QRRQRTHFTSQQLQQLEATFQR---NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp SSCSCCCCCHHHHHHHHHHHTT---CSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCHHHHHHHHHHHHc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 4677889999999999999988 999999999999999999999999999999999887543
No 43
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.45 E-value=1e-13 Score=108.79 Aligned_cols=59 Identities=19% Similarity=0.309 Sum_probs=55.7
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~ 319 (345)
++|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 22 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 80 (84)
T 2kt0_A 22 KQKTRTVFSSTQLCVLNDRFQR---QKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRW 80 (84)
T ss_dssp SCCCSSCCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 5667889999999999999999 8999999999999999999999999999999999874
No 44
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.44 E-value=1.1e-13 Score=107.46 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=55.3
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~ 319 (345)
.+|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 13 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 71 (77)
T 1puf_A 13 TRKKRCPYTKHQTLELEKEFLF---NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 71 (77)
T ss_dssp TSCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHh
Confidence 4567789999999999999999 8999999999999999999999999999999998863
No 45
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.44 E-value=1.3e-13 Score=108.19 Aligned_cols=60 Identities=22% Similarity=0.263 Sum_probs=53.7
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~ 320 (345)
++|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 20 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 20 RRRGRQTYTRYQTLELEKEFHT---NHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp ----CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCcccCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 5667889999999999999999 89999999999999999999999999999999998753
No 46
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.44 E-value=8.2e-14 Score=107.07 Aligned_cols=59 Identities=15% Similarity=0.210 Sum_probs=54.7
Q ss_pred hcCCCCCChhHHHHHHHHHH-HhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019170 259 KRRAGKLPGDTTSLLKAWWL-SHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 259 krkr~~lpk~~~~iL~~Wf~-~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~ 320 (345)
.++|+.|+..+..+|+.+|. . +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~---~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKV---NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHT---TSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 45678999999999999998 5 79999999999999999999999999999999998754
No 47
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.44 E-value=1.6e-13 Score=105.22 Aligned_cols=60 Identities=18% Similarity=0.314 Sum_probs=55.8
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~ 320 (345)
++|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 9 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 9 KRRNRTTFTSYQLEELEKVFQK---THYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp CCSCSCSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 4566779999999999999998 89999999999999999999999999999999998854
No 48
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.44 E-value=1e-13 Score=101.35 Aligned_cols=54 Identities=19% Similarity=0.327 Sum_probs=50.0
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019170 263 GKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 263 ~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~ 319 (345)
+.|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 2 T~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLR---QKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHh---cCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 46899999999999999 8999999999999999999999999999999998863
No 49
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.44 E-value=2.5e-13 Score=109.39 Aligned_cols=55 Identities=24% Similarity=0.387 Sum_probs=51.8
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019170 263 GKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 263 ~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~ 320 (345)
..|+.+++.+|+.+|.. ++||+..+|..||..+||+..||.+||+|+|.|.++..
T Consensus 16 k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 16 KEKTAEQLRVLQASFLN---SSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred ccCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 37999999999999999 89999999999999999999999999999999887754
No 50
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.43 E-value=1.1e-13 Score=105.89 Aligned_cols=58 Identities=17% Similarity=0.255 Sum_probs=54.0
Q ss_pred cCCCCCChhHHHHHHHHHH-HhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019170 260 RRAGKLPGDTTSLLKAWWL-SHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 260 rkr~~lpk~~~~iL~~Wf~-~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~ 320 (345)
++|+.|+..+..+|+.+|. . +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 3 k~Rt~ft~~Q~~~Le~~F~~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 3 EGAATMTEDQVEILEYNFNKV---NKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHSS---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 5678899999999999998 4 79999999999999999999999999999999998754
No 51
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.43 E-value=3.1e-13 Score=103.69 Aligned_cols=62 Identities=23% Similarity=0.383 Sum_probs=57.2
Q ss_pred hcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCCC
Q 019170 259 KRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (345)
Q Consensus 259 krkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~s~ 323 (345)
++.|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.....
T Consensus 7 ~~~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 68 (74)
T 2ly9_A 7 FGIRAKKTKEQLAELKVSYLK---NQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSNQ 68 (74)
T ss_dssp CCTTCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCSC
T ss_pred CCCCcCCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcCC
Confidence 456789999999999999999 89999999999999999999999999999999999865544
No 52
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.3e-13 Score=105.32 Aligned_cols=59 Identities=22% Similarity=0.398 Sum_probs=54.6
Q ss_pred cCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCC
Q 019170 260 RRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (345)
Q Consensus 260 rkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~ 321 (345)
+|+..|+.++..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++...
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQ---NPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCccCCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhh
Confidence 45567999999999999999 899999999999999999999999999999999987654
No 53
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.42 E-value=1.4e-13 Score=110.87 Aligned_cols=60 Identities=18% Similarity=0.305 Sum_probs=56.2
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~ 320 (345)
++|+|+.|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 17 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 76 (93)
T 3a01_A 17 RKKPRTSFTRIQVAELEKRFHK---QKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQT 76 (93)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCCHHHHHHHHHHHHc---CCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhh
Confidence 5667789999999999999999 89999999999999999999999999999999998754
No 54
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=4.6e-13 Score=107.10 Aligned_cols=59 Identities=24% Similarity=0.383 Sum_probs=53.7
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCCC
Q 019170 262 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (345)
Q Consensus 262 r~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~s~ 323 (345)
..+|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.....
T Consensus 17 ~k~~t~~Ql~~Le~~F~~---~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~ 75 (89)
T 2dmp_A 17 FKEKTQGQVKILEDSFLK---SSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAV 75 (89)
T ss_dssp CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCC
T ss_pred cccCCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhh
Confidence 345899999999999999 89999999999999999999999999999999998765443
No 55
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.40 E-value=2.7e-13 Score=118.89 Aligned_cols=62 Identities=23% Similarity=0.309 Sum_probs=54.2
Q ss_pred hhhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCC
Q 019170 257 LRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (345)
Q Consensus 257 ~kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~ 321 (345)
..+|+|+.|+..++.+|+.||.. +|||+..++..||..+||+..||.+||+|+|+|.|+...
T Consensus 96 ~~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 96 TPKKPRLVFTDVQRRTLHAIFKE---NKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp ----CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 35677889999999999999999 799999999999999999999999999999999987543
No 56
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.40 E-value=1.9e-13 Score=110.07 Aligned_cols=59 Identities=15% Similarity=0.343 Sum_probs=55.6
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhC---------------CChhhhhhhhhhhhhhcccc
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETG---------------LQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tg---------------Ls~kQV~nWF~N~R~R~kk~ 319 (345)
++|.|..|+..++.+|+.||.. +|||+..++..||..+| |+..||.+||+|+|+|.|+.
T Consensus 7 ~rr~R~~ft~~ql~~Le~~F~~---~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~ 80 (95)
T 2cuf_A 7 GRGSRFTWRKECLAVMESYFNE---NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRR 80 (95)
T ss_dssp CCCCSCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHH
Confidence 4567789999999999999999 99999999999999999 99999999999999999874
No 57
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.39 E-value=2.8e-13 Score=107.59 Aligned_cols=59 Identities=22% Similarity=0.245 Sum_probs=53.8
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~ 319 (345)
.+|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 28 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 28 TKRQRTSYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp ---CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 5667889999999999999988 8999999999999999999999999999999999874
No 58
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.39 E-value=3.4e-13 Score=117.08 Aligned_cols=58 Identities=19% Similarity=0.418 Sum_probs=54.5
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 318 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk 318 (345)
++|+|+.|+..+..+|+.||.. +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 93 ~rr~Rt~ft~~q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 93 KRKRRTSFTPQAIEALNAYFEK---NPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 4556778999999999999999 899999999999999999999999999999999886
No 59
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.38 E-value=5.7e-13 Score=107.61 Aligned_cols=60 Identities=23% Similarity=0.389 Sum_probs=55.2
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~ 320 (345)
.+|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+..
T Consensus 25 ~~r~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 25 STGKICKKTPEQLHMLKSAFVR---TQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp --CCSSSSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCccCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 4467789999999999999998 89999999999999999999999999999999999864
No 60
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.38 E-value=3e-13 Score=103.54 Aligned_cols=51 Identities=29% Similarity=0.516 Sum_probs=48.7
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019170 265 LPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 318 (345)
Q Consensus 265 lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk 318 (345)
-+++++..|+..|.. +|||+..++..||..|||+..||.+||+|+|.|.|+
T Consensus 11 ~~~~Ql~~LE~~F~~---~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kk 61 (66)
T 3nau_A 11 KTKEQIAHLKASFLQ---SQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQR 61 (66)
T ss_dssp CCHHHHHHHHHHHHG---GGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhc
Confidence 478999999999999 899999999999999999999999999999999875
No 61
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.37 E-value=3.7e-13 Score=108.84 Aligned_cols=59 Identities=14% Similarity=0.187 Sum_probs=53.4
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~ 319 (345)
.+|+|+.|+..+..+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 34 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 92 (97)
T 1b72_A 34 PSGLRTNFTTRQLTELEKEFHF---NKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKR 92 (97)
T ss_dssp ---CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcCcCHHHHHHHHHHHhc---cCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHH
Confidence 5667889999999999999988 8999999999999999999999999999999998763
No 62
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.37 E-value=4.4e-13 Score=105.65 Aligned_cols=61 Identities=13% Similarity=0.210 Sum_probs=55.0
Q ss_pred hhcCCCCCChhHHHHHHHHHHHh--cCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSH--AKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H--~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~ 319 (345)
++|+|+.|+.+++..|+ -|..+ +.+|||+..++..||..+||++.||.+||+|+|.+.++.
T Consensus 17 ~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~s 79 (80)
T 1wh7_A 17 TKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPSS 79 (80)
T ss_dssp SSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCCC
T ss_pred CCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCCC
Confidence 56778899999999999 57775 448999999999999999999999999999999998763
No 63
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=1.4e-12 Score=98.52 Aligned_cols=57 Identities=19% Similarity=0.348 Sum_probs=52.3
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019170 261 RAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 261 kr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~ 320 (345)
.+.++.++++..|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++-.
T Consensus 6 ~~~~p~~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~~ 62 (64)
T 2e19_A 6 SGQPPLKNLLSLLKAYYAL---NAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISVQ 62 (64)
T ss_dssp SCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCSS
T ss_pred CCCCccHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCCC
Confidence 3457789999999999988 99999999999999999999999999999999988743
No 64
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.35 E-value=7.3e-13 Score=102.18 Aligned_cols=61 Identities=20% Similarity=0.350 Sum_probs=54.9
Q ss_pred cCCCCCChhHHHHHHHHH-HHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCCC
Q 019170 260 RRAGKLPGDTTSLLKAWW-LSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (345)
Q Consensus 260 rkr~~lpk~~~~iL~~Wf-~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~s~ 323 (345)
++++.++.++..+|+..| .. ++||+..++..||..+||++.||.+||+|+|.+.|+...+.
T Consensus 10 k~r~r~~~~ql~~LE~~F~~~---~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~~s~ 71 (72)
T 2cqx_A 10 KDSPVNKVEPNDTLEKVFVSV---TKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSGPSS 71 (72)
T ss_dssp CCCCCSCSCSTTHHHHHHHHT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHhc---CCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCCCCC
Confidence 455678889999999999 77 89999999999999999999999999999999999876543
No 65
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.33 E-value=1.4e-12 Score=114.37 Aligned_cols=59 Identities=19% Similarity=0.392 Sum_probs=54.2
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~ 319 (345)
++|+|+.|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 101 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 101 RRKKRTSIETNIRVALEKSFME---NQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ---CCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCcCccccCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 5677889999999999999999 9999999999999999999999999999999999885
No 66
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.32 E-value=1.9e-12 Score=112.26 Aligned_cols=59 Identities=19% Similarity=0.409 Sum_probs=54.4
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~ 319 (345)
++|+|+.|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 87 ~rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 87 KRKRRTTISIAAKDALERHFGE---HSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCcCccHHHHHHHHHHHHH---cCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 5566889999999999999999 9999999999999999999999999999999999874
No 67
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.31 E-value=1.9e-12 Score=114.41 Aligned_cols=62 Identities=18% Similarity=0.431 Sum_probs=52.0
Q ss_pred hhhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCC
Q 019170 257 LRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (345)
Q Consensus 257 ~kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~ 321 (345)
.++|+|+.|+..++..|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 98 ~~rr~Rt~ft~~Ql~~LE~~F~~---~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 98 RKRKKRTSIEVGVKGALESHFLK---CPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp --------CCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred cCCCCceeccHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 45667889999999999999999 999999999999999999999999999999999998654
No 68
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.29 E-value=4.8e-12 Score=97.25 Aligned_cols=55 Identities=18% Similarity=0.283 Sum_probs=51.4
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCC
Q 019170 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (345)
Q Consensus 264 ~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~ 321 (345)
.++..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+...
T Consensus 10 ~~t~~ql~~LE~~F~~---~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 10 HMSHTQVIELERKFSH---QKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred cCCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 5688999999999999 899999999999999999999999999999999988654
No 69
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.29 E-value=6.4e-12 Score=96.90 Aligned_cols=65 Identities=26% Similarity=0.320 Sum_probs=59.3
Q ss_pred hhhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCCC
Q 019170 257 LRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (345)
Q Consensus 257 ~kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~s~ 323 (345)
.+||.|+.|+.++..+|+..|..- +|||+.++++.||.+|||++.+|..||+|+|--.+++.++.
T Consensus 6 ~~kR~RT~~s~eQL~~Lqs~f~~~--~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~~~~~~ 70 (71)
T 1wi3_A 6 SGPRSRTKISLEALGILQSFIHDV--GLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHSGPSS 70 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHH--CSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCSSCSSC
T ss_pred CCCCCCccCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecCCCCCC
Confidence 367888999999999999999984 79999999999999999999999999999999998876653
No 70
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.28 E-value=3.5e-12 Score=96.97 Aligned_cols=55 Identities=20% Similarity=0.393 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCCC
Q 019170 267 GDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (345)
Q Consensus 267 k~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~s~ 323 (345)
..+...|+..|..+ ++||+..++..||..+||++.||.+||+|+|.+.|+..++.
T Consensus 9 ~~~~~~LE~~F~~~--~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~~~~ 63 (64)
T 1x2m_A 9 AQPNAILEKVFTAI--TKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSGPSS 63 (64)
T ss_dssp SCHHHHHHHHHHTT--CSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSSCCC
T ss_pred chHHHHHHHHHHHc--CCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCCCC
Confidence 34689999999543 89999999999999999999999999999999999887765
No 71
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.27 E-value=3.7e-12 Score=104.25 Aligned_cols=62 Identities=24% Similarity=0.360 Sum_probs=52.8
Q ss_pred HhhhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHH------------------hC---CChhhhhhhhhhhhh
Q 019170 256 ILRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQE------------------TG---LQLKQINNWFINQRK 314 (345)
Q Consensus 256 ~~kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~------------------tg---Ls~kQV~nWF~N~R~ 314 (345)
..++|+|..|+..+..+|+.+|.. +|||+..+|..||.. +| |+..||.+||+|+|+
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~---~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~ 83 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRK 83 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHH
Confidence 345667789999999999999998 899999999999999 88 999999999999999
Q ss_pred hccccC
Q 019170 315 RNWHAN 320 (345)
Q Consensus 315 R~kk~~ 320 (345)
+.++..
T Consensus 84 k~k~k~ 89 (99)
T 1lfb_A 84 EEAFRH 89 (99)
T ss_dssp TTSCCC
T ss_pred HHHHhc
Confidence 887654
No 72
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=5.2e-12 Score=104.22 Aligned_cols=59 Identities=24% Similarity=0.318 Sum_probs=54.8
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh---------------------CCChhhhhhhhhhhhhhc
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQET---------------------GLQLKQINNWFINQRKRN 316 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~t---------------------gLs~kQV~nWF~N~R~R~ 316 (345)
++|.|..|++.++.+|+.+|.. +|||+..+|..||..+ +|+..+|.+||+|+|+|.
T Consensus 6 ~Rr~Rt~ft~~ql~~Le~~F~~---~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 6 SGRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp SCCCCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHcC---CCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 4566789999999999999999 8999999999999999 799999999999999998
Q ss_pred ccc
Q 019170 317 WHA 319 (345)
Q Consensus 317 kk~ 319 (345)
++.
T Consensus 83 kr~ 85 (102)
T 2da6_A 83 AFR 85 (102)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
No 73
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.23 E-value=3.6e-12 Score=111.35 Aligned_cols=60 Identities=22% Similarity=0.438 Sum_probs=55.2
Q ss_pred hhhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019170 257 LRKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 257 ~kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~ 319 (345)
.++|+|+.|+..+...|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|+.
T Consensus 95 ~~rr~Rt~ft~~Q~~~Le~~F~~---~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 95 ARKRKRTSIENRVRWSLETMFLK---SPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CSCCCCCCCCHHHHHHHHTTTTT---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHHcc---CCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 35667789999999999999987 8999999999999999999999999999999999874
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.07 E-value=1.2e-10 Score=107.74 Aligned_cols=57 Identities=25% Similarity=0.375 Sum_probs=52.6
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhC---------------------CChhhhhhhhhhhhhhc
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETG---------------------LQLKQINNWFINQRKRN 316 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tg---------------------Ls~kQV~nWF~N~R~R~ 316 (345)
++|.|..|++.++.+|+.||.. +|||+..+|+.||..|| |+..||.|||+|+|++.
T Consensus 142 ~RR~R~~ft~~ql~~Le~~F~~---~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 142 MRRNRFKWGPASQQILYQAYDR---QKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCcCCCHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 5566778999999999999999 99999999999999998 89999999999999976
Q ss_pred c
Q 019170 317 W 317 (345)
Q Consensus 317 k 317 (345)
.
T Consensus 219 ~ 219 (221)
T 2h8r_A 219 A 219 (221)
T ss_dssp C
T ss_pred h
Confidence 3
No 75
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.06 E-value=9.7e-11 Score=112.48 Aligned_cols=55 Identities=20% Similarity=0.366 Sum_probs=51.1
Q ss_pred cCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcc
Q 019170 260 RRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 317 (345)
Q Consensus 260 rkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~k 317 (345)
+.+..|...++..|+..|.. +|||+..+|..||..|||++.||++||+|+|+|.|
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~---~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHHhc---CCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 33467999999999999998 89999999999999999999999999999999976
No 76
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.05 E-value=7e-11 Score=107.33 Aligned_cols=58 Identities=24% Similarity=0.374 Sum_probs=52.9
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhC---------------------CChhhhhhhhhhhhhhc
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETG---------------------LQLKQINNWFINQRKRN 316 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tg---------------------Ls~kQV~nWF~N~R~R~ 316 (345)
++|.|..|++.++.+|+.+|.. +|||+..+|..||..+| |+..||.+||+|+|++.
T Consensus 115 ~rr~R~~ft~~ql~~Le~~F~~---~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 115 GRRNRFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp --CCCCCCCHHHHHHHHHHHHH---HCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCcccCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 4667789999999999999999 89999999999999999 99999999999999998
Q ss_pred cc
Q 019170 317 WH 318 (345)
Q Consensus 317 kk 318 (345)
+.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 74
No 77
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=9.9e-10 Score=84.95 Aligned_cols=48 Identities=21% Similarity=0.439 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcc
Q 019170 267 GDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 317 (345)
Q Consensus 267 k~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~k 317 (345)
++++.+|+..|.. +|||+.+++..||..+||+...|..||+|+|.+..
T Consensus 14 k~ql~~Lk~yF~~---n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~~ 61 (71)
T 2da7_A 14 KDHMSVLKAYYAM---NMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQY 61 (71)
T ss_dssp THHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccccc
Confidence 6789999999999 99999999999999999999999999999998544
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=96.46 E-value=0.00046 Score=46.98 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=15.9
Q ss_pred hhhhhhhhhhhhhccccC
Q 019170 303 KQINNWFINQRKRNWHAN 320 (345)
Q Consensus 303 kQV~nWF~N~R~R~kk~~ 320 (345)
.||.+||+|+|.|.|+..
T Consensus 1 rQVkIWFQNRRaK~Kk~~ 18 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRV 18 (37)
T ss_dssp CCTTTTTTCSHHHHTSSH
T ss_pred CCceeccHHHHHHHHHHh
Confidence 489999999999999854
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.88 E-value=0.016 Score=44.51 Aligned_cols=44 Identities=25% Similarity=0.453 Sum_probs=39.5
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 019170 265 LPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFIN 311 (345)
Q Consensus 265 lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N 311 (345)
.++..+++|+++|.. +....+++-..|+.+++|+..||..||.-
T Consensus 13 ~~p~~~e~L~~Yy~~---hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 13 PPPPDIQPLERYWAA---HQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCCCCHHHHHHHHH---TCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHH---hcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 355668999999999 58899999999999999999999999974
No 80
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=77.26 E-value=5.3 Score=31.86 Aligned_cols=50 Identities=10% Similarity=0.022 Sum_probs=39.8
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhc
Q 019170 261 RAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRN 316 (345)
Q Consensus 261 kr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~ 316 (345)
+|..|+.+.+..+-.++.. ++.++. ..+|+..|++...|..|..+++...
T Consensus 4 ~r~~~t~e~K~~iv~~~~~---~g~~~~---~~~A~~~gvs~stl~~~~~~~~~~~ 53 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEE---NPDLRK---GEIARRFNIPPSTLSTILKNKRAIL 53 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHH---CTTSCH---HHHHHHHTCCHHHHHHHHHTHHHHH
T ss_pred cceeCCHHHHHHHHHHHHH---CCCCcH---HHHHHHhCCCHHHHHHHHhchhhhc
Confidence 5678999998888777766 576653 3589999999999999998876643
No 81
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=71.23 E-value=6.3 Score=27.68 Aligned_cols=48 Identities=6% Similarity=0.119 Sum_probs=32.9
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhh
Q 019170 262 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 262 r~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R 313 (345)
+++|+.+.+......+.. .++.......+|+..|++..+|.+|....+
T Consensus 3 r~~ys~efK~~~~~~~~~----g~s~~~~~~~vA~~~gIs~~tl~~W~~~~~ 50 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRN----DNDCKGNQRATARKYNIHRRQIQKWLQCES 50 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH----CTTTTTCHHHHHHHTTSCHHHHHHHHTTHH
T ss_pred CCcCCHHHHHHHHHHHHc----CCCcchHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 457888887666555444 222122356899999999999999965443
No 82
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=61.54 E-value=18 Score=22.83 Aligned_cols=42 Identities=10% Similarity=0.075 Sum_probs=29.5
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhh
Q 019170 263 GKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQ 312 (345)
Q Consensus 263 ~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~ 312 (345)
..|+.+.+..+...+.. .+ + ...+|+.+|++...|..|....
T Consensus 4 ~~l~~~~~~~i~~~~~~----g~-s---~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 4 SALSDTERAQLDVMKLL----NV-S---LHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp CCCCHHHHHHHHHHHHT----TC-C---HHHHHHHHTCCHHHHHHHHHCS
T ss_pred CCCCHHHHHHHHHHHHc----CC-C---HHHHHHHHCcCHHHHHHHHhhH
Confidence 46777776555444443 23 2 4578999999999999998644
No 83
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=61.07 E-value=5.3 Score=28.09 Aligned_cols=49 Identities=16% Similarity=0.047 Sum_probs=38.5
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019170 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 264 ~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~ 320 (345)
.||+..+.+|.-.|.. .++ -.++|+..|++...|.++....|++.++..
T Consensus 15 ~L~~~~r~il~l~~~~----g~s----~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 15 DLTTDQREALLLTQLL----GLS----YADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp SSCHHHHHHHHHHHTS----CCC----HHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred hCCHHHHHHHHHHHHc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 5899999998776544 232 247999999999999999999999988643
No 84
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=60.46 E-value=4.6 Score=30.70 Aligned_cols=47 Identities=6% Similarity=0.196 Sum_probs=38.3
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019170 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 318 (345)
Q Consensus 264 ~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk 318 (345)
.||...+.+|.-.|.. .| .-.++|+.+|++...|.++....|++.++
T Consensus 37 ~L~~~~r~vl~l~~~~----g~----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYR----GW----STAQIATDLGIAEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp TSCHHHHHHHHHHHTS----CC----CHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4889999999776554 22 23579999999999999999999999876
No 85
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=58.91 E-value=22 Score=26.82 Aligned_cols=45 Identities=13% Similarity=0.150 Sum_probs=32.0
Q ss_pred CCCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhh
Q 019170 261 RAGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 261 kr~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R 313 (345)
++.+|+.+.+......+.. .+ -...+|+.+|++...|.+|....+
T Consensus 19 ~~~~ys~e~k~~~v~~~~~----g~----s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 19 PLRSLTPRDKIHAIQRIHD----GE----SKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp CCSSCCHHHHHHHHHHHHH----TC----CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHC----CC----CHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4568888886555555543 12 145889999999999999986544
No 86
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=52.38 E-value=11 Score=26.87 Aligned_cols=54 Identities=9% Similarity=0.100 Sum_probs=39.6
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCC
Q 019170 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (345)
Q Consensus 264 ~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~ 321 (345)
.||+..+.+|.-.|.-.-...+. -.++|+.+|++...|.++....+++.++...
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~s----~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~ 58 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDYT----LEEVGKQFDVTRERIRQIEAKALRKLRHPSR 58 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCCC----HHHHHHHHTCCHHHHHHHHHHHHHGGGSCCG
T ss_pred cCCHHHHHHHHHHHccCCCCCCC----HHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 58888999987765210001222 2479999999999999999999999987543
No 87
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=49.62 E-value=8.4 Score=30.80 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=36.9
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019170 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 318 (345)
Q Consensus 264 ~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk 318 (345)
.||+..+.++. .|.. .| .-.++|+.+|++...|.++....|++.++
T Consensus 109 ~L~~~~r~v~~-~~~~----g~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR----GY----SYREIATILSKNLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp HSCHHHHHHHH-HHTT----TC----CHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc----CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 37888999998 4433 33 23579999999999999999999999876
No 88
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=49.35 E-value=12 Score=27.01 Aligned_cols=52 Identities=13% Similarity=-0.030 Sum_probs=39.0
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcc-cc
Q 019170 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW-HA 319 (345)
Q Consensus 264 ~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~k-k~ 319 (345)
.||+..+.+|.-.|.-.-..++. -.++|+.+|++...|.+|...++++.+ ..
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~s----~~eIA~~l~is~~tV~~~~~ra~~kLr~~~ 62 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHT----LEEVGAYFGVTRERIRQIENKALRKLKYHE 62 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCC----HHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHhcccCCCCC----HHHHHHHHCCCHHHHHHHHHHHHHHHHhhH
Confidence 58999999997776410001222 247999999999999999999999998 54
No 89
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=49.16 E-value=18 Score=27.78 Aligned_cols=51 Identities=12% Similarity=0.087 Sum_probs=40.9
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCCCC
Q 019170 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANPSS 323 (345)
Q Consensus 264 ~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~s~ 323 (345)
.||+..+++|.-. .. .+. -.++|+.+|++...|.++..+.+++.+..+...
T Consensus 27 ~Lt~~e~~vl~l~-~~----g~s----~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~ 77 (95)
T 3c57_A 27 GLTDQERTLLGLL-SE----GLT----NKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQ 77 (95)
T ss_dssp CCCHHHHHHHHHH-HT----TCC----HHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCCC
T ss_pred cCCHHHHHHHHHH-Hc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHH
Confidence 5889999998875 33 222 258999999999999999999999998876544
No 90
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=48.44 E-value=12 Score=28.08 Aligned_cols=53 Identities=11% Similarity=0.067 Sum_probs=39.7
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019170 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 264 ~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~ 320 (345)
.||+..+.+|.-.|.-.-..++ .-..+|..+|++...|.++...++++.++..
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~----s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l 70 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPK----TLEEVGQYFNVTRERIRQIEVKALRKLRHPS 70 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC----CHHHHHHHHTCCHHHHHHHHHHHHHHHBTTB
T ss_pred hCCHHHHHHHHHHHccCCCCCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 4889999999777641000122 2347899999999999999999999998754
No 91
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=47.79 E-value=29 Score=26.06 Aligned_cols=49 Identities=10% Similarity=0.119 Sum_probs=38.5
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCC
Q 019170 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (345)
Q Consensus 264 ~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~ 321 (345)
.||+..+.+|.-+ .. .|.. .++|+.+|++...|.++..+.|++.+..+.
T Consensus 29 ~Lt~~e~~vl~l~-~~----g~s~----~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 77 (91)
T 2rnj_A 29 MLTEREMEILLLI-AK----GYSN----QEIASASHITIKTVKTHVSNILSKLEVQDR 77 (91)
T ss_dssp GCCSHHHHHHHHH-HT----TCCT----THHHHHHTCCHHHHHHHHHHHHHHTTCCSS
T ss_pred cCCHHHHHHHHHH-Hc----CCCH----HHHHHHHCcCHHHHHHHHHHHHHHHCCCCH
Confidence 5888899998764 33 2322 378999999999999999999999887554
No 92
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=45.67 E-value=23 Score=32.04 Aligned_cols=38 Identities=26% Similarity=0.335 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHHHHhhhhcC
Q 019170 140 HYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179 (345)
Q Consensus 140 aYc~vL~kykEEL~kP~~~~~~EA~~f~~~iE~QL~sL~~ 179 (345)
.|-.-|-....-|..+.+ ..|.+.+++++...|.++|+
T Consensus 83 ~YLkkLD~l~~~Lq~h~~--Lse~l~l~kqLs~sLh~mC~ 120 (204)
T 2jqq_A 83 EYLKKLDEIYGSLRNHSQ--LTEALSLGKRLSKSLHEMCG 120 (204)
T ss_dssp HHHHHHHHHHHTCSSSSH--HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHhC
Confidence 366666666677777654 67999999999999999997
No 93
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=45.28 E-value=69 Score=26.17 Aligned_cols=62 Identities=11% Similarity=0.035 Sum_probs=41.4
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHH-HHHH------hCCChhhhhhhhhhhhhhccccCCCCCcc
Q 019170 262 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKAR-LVQE------TGLQLKQINNWFINQRKRNWHANPSSSTA 326 (345)
Q Consensus 262 r~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~-LA~~------tgLs~kQV~nWF~N~R~R~kk~~~s~st~ 326 (345)
+..++.+....+..++.+ +|--+..+... |.+. ..++..+|..|+...+..-.+.....+++
T Consensus 81 ~~~~~~~~~~~I~~~~~~---~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~~~~~~~~~~~~ 149 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQ---NPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSGAP 149 (159)
T ss_dssp CCCCCTTHHHHHHHHHHH---CSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCCCSCCCCCCCCC
T ss_pred CCCCCHHHHHHHHHHHHH---CccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhCCCccCcccCCCC
Confidence 346777788888888877 56666555433 3222 14899999999988777665555555554
No 94
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=43.74 E-value=18 Score=25.47 Aligned_cols=50 Identities=10% Similarity=0.050 Sum_probs=39.0
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019170 262 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 262 r~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~ 320 (345)
...|++..+.+|.-+ .. .+ .-.++|+.+|++...|..++...+++.+..+
T Consensus 9 ~~~L~~~e~~il~~~-~~----g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~ 58 (74)
T 1fse_A 9 KPLLTKREREVFELL-VQ----DK----TTKEIASELFISEKTVRNHISNAMQKLGVKG 58 (74)
T ss_dssp CCCCCHHHHHHHHHH-TT----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCSS
T ss_pred CCCCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
Confidence 357999999998764 22 33 2357999999999999999999998887643
No 95
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=43.72 E-value=12 Score=27.00 Aligned_cols=47 Identities=11% Similarity=0.130 Sum_probs=36.4
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019170 265 LPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 265 lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~ 320 (345)
||+..+.+|.-+ .. .+. -.++|+.+|++...|.++....+++.+..+
T Consensus 17 L~~~e~~vl~l~-~~----g~s----~~eIA~~l~is~~tV~~~~~r~~~kl~~~~ 63 (79)
T 1x3u_A 17 LSERERQVLSAV-VA----GLP----NKSIAYDLDISPRTVEVHRANVMAKMKAKS 63 (79)
T ss_dssp HCHHHHHHHHHH-TT----TCC----HHHHHHHTTSCHHHHHHHHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHH-Hc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 677788888664 22 332 247999999999999999999999988754
No 96
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=43.31 E-value=15 Score=27.38 Aligned_cols=48 Identities=8% Similarity=0.042 Sum_probs=37.8
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019170 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 264 ~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~ 320 (345)
.|+...+++|.-+ .. .+ .-.++|+.+|++...|.++..+.+++.+..+
T Consensus 21 ~Lt~~e~~vl~l~-~~----g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 68 (82)
T 1je8_A 21 QLTPRERDILKLI-AQ----GL----PNKMIARRLDITESTVKVHVKHMLKKMKLKS 68 (82)
T ss_dssp GSCHHHHHHHHHH-TT----TC----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCSS
T ss_pred cCCHHHHHHHHHH-Hc----CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 4888888888764 22 33 2357999999999999999999999987654
No 97
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=43.23 E-value=27 Score=28.86 Aligned_cols=53 Identities=6% Similarity=0.108 Sum_probs=39.3
Q ss_pred hcCCCCCChhHHHHHHHHH-HHhcCCCCCCHHHHHHHHH-Hh--CCChhhhhhhhhhhhh
Q 019170 259 KRRAGKLPGDTTSLLKAWW-LSHAKWPYPTEEDKARLVQ-ET--GLQLKQINNWFINQRK 314 (345)
Q Consensus 259 krkr~~lpk~~~~iL~~Wf-~~H~~~PYPs~~eK~~LA~-~t--gLs~kQV~nWF~N~R~ 314 (345)
+++|..|+-+++..+..|+ .. +|-.+..+-...|. .. |++..+|..|..|+-.
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~---~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~~ 62 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQL---QNRSGQQDLIEWFREKFGKDISQPSVSQILSSKYS 62 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSS---SSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHHH
Confidence 5678899999999999998 45 57666544333222 67 8899999999987544
No 98
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=41.98 E-value=41 Score=25.41 Aligned_cols=41 Identities=12% Similarity=-0.011 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhh
Q 019170 269 TTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQ 312 (345)
Q Consensus 269 ~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~ 312 (345)
....+..|...|+..|-++.+ .||+.+|++..++...|.-.
T Consensus 3 ~~~~i~~~i~~~~~~~~~~~~---~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 3 AKELIQNIIEESYTDSQFTLS---VLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHHHTTCTTCCHH---HHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCHH---HHHHHHCcCHHHHHHHHHHH
Confidence 456677888898777556654 58888899998888887643
No 99
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=41.27 E-value=79 Score=24.47 Aligned_cols=48 Identities=27% Similarity=0.346 Sum_probs=36.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhHH---------hhhhHHHHHHHHHHHHHHhhhhc
Q 019170 131 DKELDQFMTHYVLLLYSFKEQLQQH---------VRVHAMEAVMACWDLEQSLQSLT 178 (345)
Q Consensus 131 dpELDqFMeaYc~vL~kykEEL~kP---------~~~~~~EA~~f~~~iE~QL~sL~ 178 (345)
.-|+|..-.+--+...||.+|+..- +++..++|.+.--.+|.++.+|.
T Consensus 20 ~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~ 76 (86)
T 3swk_A 20 EVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4678887777777888898887653 23556788888889999998875
No 100
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=41.14 E-value=17 Score=29.19 Aligned_cols=47 Identities=13% Similarity=0.196 Sum_probs=38.4
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019170 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 318 (345)
Q Consensus 264 ~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk 318 (345)
.||+..+.++.-.|.. .++ -.++|+.+|++...|.+|....|++.++
T Consensus 22 ~L~~~~r~vl~l~y~~----g~s----~~EIA~~lgiS~~tV~~~l~ra~~kLr~ 68 (113)
T 1s7o_A 22 LLTDKQMNYIELYYAD----DYS----LAEIADEFGVSRQAVYDNIKRTEKILET 68 (113)
T ss_dssp GSCHHHHHHHHHHHHT----CCC----HHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4899999998876655 232 2579999999999999999999988875
No 101
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=40.21 E-value=14 Score=30.75 Aligned_cols=47 Identities=11% Similarity=0.075 Sum_probs=37.8
Q ss_pred CChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019170 265 LPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 265 lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~ 319 (345)
||+..+.+|.-.|.. .++ -.++|+.+|++...|.++...+|++.++.
T Consensus 141 L~~~~r~vl~l~~~~----g~s----~~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 141 LPEDLRMAITLRELD----GLS----YEEIAAIMDCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp SCHHHHHHHHHHHTT----CCC----HHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHc----CCC----HHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 788888888765554 232 24799999999999999999999998864
No 102
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=39.51 E-value=39 Score=26.45 Aligned_cols=50 Identities=10% Similarity=0.096 Sum_probs=39.4
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019170 262 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 262 r~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~ 320 (345)
...||+..+++|.-++ +- .. -.++|+.+|++...|.++..+.+++..-.+
T Consensus 32 ~~~Lt~re~~Vl~l~~-~G--~s------~~EIA~~L~iS~~TV~~~l~ri~~KLgv~~ 81 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFA-EG--FL------VTEIAKKLNRSIKTISSQKKSAMMKLGVDN 81 (99)
T ss_dssp SSSCCHHHHHHHHHHH-HT--CC------HHHHHHHHTSCHHHHHHHHHHHHHHHTCSS
T ss_pred cCCCCHHHHHHHHHHH-cC--CC------HHHHHHHHCcCHHHHHHHHHHHHHHHCCCC
Confidence 4579999999996654 42 22 268999999999999999999998876543
No 103
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=38.91 E-value=15 Score=31.35 Aligned_cols=47 Identities=11% Similarity=0.187 Sum_probs=38.9
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019170 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 318 (345)
Q Consensus 264 ~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk 318 (345)
.||+..+.+|.-.|.. .++ -.++|+.+|++...|..+...+|++.++
T Consensus 187 ~L~~~~r~vl~l~~~~----g~s----~~EIA~~lgis~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYE----ELP----AKEVAKILETSVSRVSQLKAKALERLRE 233 (239)
T ss_dssp TSCHHHHHHHHHHHTS----CCC----HHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhc----CCC----HHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 5899999999877654 332 3479999999999999999999999876
No 104
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=38.62 E-value=16 Score=24.79 Aligned_cols=23 Identities=17% Similarity=0.106 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 019170 291 KARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 291 K~~LA~~tgLs~kQV~nWF~N~R 313 (345)
...||+.+|++...|..|..+.+
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999998753
No 105
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=38.43 E-value=16 Score=24.89 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 019170 291 KARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 291 K~~LA~~tgLs~kQV~nWF~N~R 313 (345)
...||+.+|++...|..|..+.+
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 35799999999999999998743
No 106
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=38.29 E-value=17 Score=26.29 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.2
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 019170 291 KARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 291 K~~LA~~tgLs~kQV~nWF~N~R 313 (345)
...||+.+|++...|+.|..+.+
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 35899999999999999998754
No 107
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=37.30 E-value=9.6 Score=31.50 Aligned_cols=47 Identities=23% Similarity=0.311 Sum_probs=38.3
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccc
Q 019170 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWH 318 (345)
Q Consensus 264 ~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk 318 (345)
.||+..+.+|.-.|... .+| .++|+.+|++...|.++...+|++.++
T Consensus 135 ~L~~~~r~vl~l~~~~g--~s~------~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 135 RLPEAQRALIERAFFGD--LTH------RELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp TSCHHHHHHHHHHHHSC--CSS------CCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC--CCH------HHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 38999999998766553 333 268999999999999999999998875
No 108
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=37.14 E-value=17 Score=25.12 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=20.0
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 019170 291 KARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 291 K~~LA~~tgLs~kQV~nWF~N~R 313 (345)
...||+.+|++...|+.|..+.+
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~ 41 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVT 41 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 35799999999999999998754
No 109
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=36.37 E-value=42 Score=25.29 Aligned_cols=46 Identities=11% Similarity=0.165 Sum_probs=31.1
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhh
Q 019170 263 GKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRK 314 (345)
Q Consensus 263 ~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~ 314 (345)
++|+.+.+...-..+... ..+ -...+|+.+|++..+|.+|....+.
T Consensus 4 ~~ys~e~k~~~v~~~~~~--~g~----s~~~ia~~~gIs~~tl~rW~~~~~~ 49 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENS--DGA----SLQQIANDLGINRVTLKNWIIKYGS 49 (97)
T ss_dssp CCCCHHHHHHHHHHHTTG--GGS----CHHHHHHHHTSCHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHc--CCC----hHHHHHHHHCcCHHHHHHHHHHHhh
Confidence 568888766554444321 011 2568999999999999999865543
No 110
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=35.94 E-value=45 Score=21.26 Aligned_cols=42 Identities=7% Similarity=0.117 Sum_probs=28.5
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhh
Q 019170 263 GKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQ 312 (345)
Q Consensus 263 ~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~ 312 (345)
..++.+....+...+.. .. + ...+|+.+|++...|..|+...
T Consensus 4 ~~~~~~~~~~i~~l~~~----g~-s---~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 4 RAINKHEQEQISRLLEK----GH-P---RQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp CSSCTTHHHHHHHHHHT----TC-C---HHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCCCHHHHHHHHHHHHc----CC-C---HHHHHHHHCCCHHHHHHHHHHc
Confidence 35666665555555443 22 2 4579999999999999998643
No 111
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=35.35 E-value=81 Score=24.71 Aligned_cols=58 Identities=24% Similarity=0.313 Sum_probs=40.0
Q ss_pred hhcCCCCCChhHHHHHHHHHHHhc--CCCCCCHHHHH----HHHHHhCCChhhh-hhhhhhhhhhc
Q 019170 258 RKRRAGKLPGDTTSLLKAWWLSHA--KWPYPTEEDKA----RLVQETGLQLKQI-NNWFINQRKRN 316 (345)
Q Consensus 258 kkrkr~~lpk~~~~iL~~Wf~~H~--~~PYPs~~eK~----~LA~~tgLs~kQV-~nWF~N~R~R~ 316 (345)
+++.+..+..+.-..|..|+.... .-| ||...-. .|+...|++.-.+ .+|+.+-.+|+
T Consensus 66 ~kr~r~~~~~~~E~~L~~Wi~~~~~~g~p-vs~~~I~~kA~~i~~~~g~~~f~~S~gWl~~F~~Rh 130 (131)
T 1hlv_A 66 RKTNKLSPYDKLEGLLIAWFQQIRAAGLP-VKGIILKEKALRIAEELGMDDFTASNGWLDRFRRRR 130 (131)
T ss_dssp CCCCCCCTTHHHHHHHHHHHHHHGGGTCC-CCHHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHT
T ss_pred hcccCCCCCHHHHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhc
Confidence 344455678888999999998754 445 7776654 4555667754333 58999888876
No 112
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=34.47 E-value=21 Score=25.08 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=19.8
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 019170 291 KARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 291 K~~LA~~tgLs~kQV~nWF~N~R 313 (345)
...||+.+|++...|..|..+.+
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999998754
No 113
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=34.19 E-value=21 Score=25.02 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 019170 291 KARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 291 K~~LA~~tgLs~kQV~nWF~N~R 313 (345)
...||+.+|++...|+.|..+.+
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSET 43 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999998743
No 114
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=33.69 E-value=20 Score=28.66 Aligned_cols=48 Identities=8% Similarity=0.124 Sum_probs=38.6
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcccc
Q 019170 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHA 319 (345)
Q Consensus 264 ~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~ 319 (345)
.||+..+.++.-.|.. .++ -.++|+.+|++...|.++....|++.++.
T Consensus 25 ~L~~~~r~vl~l~~~~----g~s----~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLE----DYS----LSEIADTFNVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp GSCHHHHHHHHHHHTS----CCC----HHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 4889999998776554 332 25799999999999999999999988753
No 115
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=33.07 E-value=22 Score=25.00 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=19.2
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019170 292 ARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 292 ~~LA~~tgLs~kQV~nWF~N~R 313 (345)
..||+.+|++...|..|..+.+
T Consensus 27 ~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 27 EELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHCCCHHHHHHHHCCCC
Confidence 4799999999999999998753
No 116
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=32.82 E-value=30 Score=23.53 Aligned_cols=29 Identities=7% Similarity=0.129 Sum_probs=25.7
Q ss_pred HHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019170 292 ARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 292 ~~LA~~tgLs~kQV~nWF~N~R~R~kk~~ 320 (345)
.++|+.+|++...|.++..+.+++.+..+
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~~~ 45 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQVHK 45 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCCCC
Confidence 47999999999999999999999887654
No 117
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=32.77 E-value=22 Score=24.31 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=19.7
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 019170 291 KARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 291 K~~LA~~tgLs~kQV~nWF~N~R 313 (345)
...||+.+|++...|+.|..+.+
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~ 39 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKT 39 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 35799999999999999988754
No 118
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=31.37 E-value=24 Score=24.82 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.7
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019170 292 ARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 292 ~~LA~~tgLs~kQV~nWF~N~R 313 (345)
..||+.+|++...|+.|..+.+
T Consensus 24 ~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 24 NRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 4799999999999999998765
No 119
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=30.61 E-value=23 Score=24.95 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=19.1
Q ss_pred HHHHHHhCCChhhhhhhhhhh
Q 019170 292 ARLVQETGLQLKQINNWFINQ 312 (345)
Q Consensus 292 ~~LA~~tgLs~kQV~nWF~N~ 312 (345)
..||+.+|++...|..|..+.
T Consensus 25 ~~lA~~~gis~~~is~~e~g~ 45 (73)
T 3omt_A 25 LWLTETLDKNKTTVSKWCTND 45 (73)
T ss_dssp HHHHHHTTCCHHHHHHHHTTS
T ss_pred HHHHHHHCcCHHHHHHHHcCC
Confidence 479999999999999999875
No 120
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=30.54 E-value=31 Score=24.93 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.4
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019170 292 ARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 292 ~~LA~~tgLs~kQV~nWF~N~R 313 (345)
..||+.+|++...|+.|..+.+
T Consensus 29 ~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 29 SELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHhCCCHHHHHHHHcCCC
Confidence 4799999999999999998744
No 121
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=30.50 E-value=69 Score=25.01 Aligned_cols=52 Identities=12% Similarity=-0.088 Sum_probs=31.7
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhC--CChhhhhhhhhhhhh-hccccC
Q 019170 262 AGKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETG--LQLKQINNWFINQRK-RNWHAN 320 (345)
Q Consensus 262 r~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tg--Ls~kQV~nWF~N~R~-R~kk~~ 320 (345)
...++.+....+..+ .. +|.-+. ..|+...| ++...|..|+....- +.+++.
T Consensus 58 ~~~l~~~~~~~i~~~-~~---~~~~s~---~~i~~~lg~~~s~~tV~r~l~~~g~~~~~k~~ 112 (141)
T 1u78_A 58 RKALSVRDERNVIRA-AS---NSCKTA---RDIRNELQLSASKRTILNVIKRSGVIVRQKLR 112 (141)
T ss_dssp CCSSCHHHHHHHHHH-HH---HCCCCH---HHHHHHTTCCSCHHHHHHHHHHTC--------
T ss_pred CCcCCHHHHHHHHHH-Hh---CCCCCH---HHHHHHHCCCccHHHHHHHHHHCCCceeeecC
Confidence 346888877777666 33 354454 35777778 799999999976655 444443
No 122
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=30.10 E-value=27 Score=24.26 Aligned_cols=21 Identities=19% Similarity=0.094 Sum_probs=18.8
Q ss_pred HHHHHHhCCChhhhhhhhhhh
Q 019170 292 ARLVQETGLQLKQINNWFINQ 312 (345)
Q Consensus 292 ~~LA~~tgLs~kQV~nWF~N~ 312 (345)
..||+.+|++...|+.|..+.
T Consensus 30 ~~lA~~~gis~~~i~~~e~g~ 50 (74)
T 1y7y_A 30 ETLAFLSGLDRSYVGGVERGQ 50 (74)
T ss_dssp HHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHCcCHHHHHHHHCCC
Confidence 479999999999999999775
No 123
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=29.57 E-value=97 Score=23.57 Aligned_cols=52 Identities=8% Similarity=0.184 Sum_probs=33.8
Q ss_pred CCCCChhHHHHHHHHHHHhcCCCCCCH-HHHHHHHHHhCCChhhhhhhhhhhhh
Q 019170 262 AGKLPGDTTSLLKAWWLSHAKWPYPTE-EDKARLVQETGLQLKQINNWFINQRK 314 (345)
Q Consensus 262 r~~lpk~~~~iL~~Wf~~H~~~PYPs~-~eK~~LA~~tgLs~kQV~nWF~N~R~ 314 (345)
+.+|+.+.+...-..+..+- .-|++. .....+|..+|++..+|.+|..-.+.
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~-~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~~~ 56 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQ-GEYDSQWATICSIAPKIGCTPETLRVWVRQHER 56 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhcc-cccccccccHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 45788888755544443310 013343 35678999999999999999765443
No 124
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=29.24 E-value=24 Score=25.45 Aligned_cols=22 Identities=9% Similarity=0.225 Sum_probs=19.3
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019170 292 ARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 292 ~~LA~~tgLs~kQV~nWF~N~R 313 (345)
..||+.+|++...|+.|..+.+
T Consensus 29 ~~lA~~~gvs~~~is~~e~g~~ 50 (80)
T 3kz3_A 29 ESVADKMGMGQSAVAALFNGIN 50 (80)
T ss_dssp HHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHhCcCHHHHHHHHcCCC
Confidence 3799999999999999998764
No 125
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=29.21 E-value=29 Score=25.37 Aligned_cols=22 Identities=5% Similarity=0.135 Sum_probs=19.8
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019170 292 ARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 292 ~~LA~~tgLs~kQV~nWF~N~R 313 (345)
..||+.+|++...|+.|..+.+
T Consensus 35 ~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 35 FKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 4799999999999999998865
No 126
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=27.25 E-value=47 Score=29.62 Aligned_cols=50 Identities=10% Similarity=0.080 Sum_probs=40.6
Q ss_pred CCCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccCC
Q 019170 263 GKLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHANP 321 (345)
Q Consensus 263 ~~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~~ 321 (345)
..||+..+.+|.-.+ + .++ -.++|+.+|++...|.+...+.|++.+..+.
T Consensus 196 ~~L~~~erevl~L~~-~----G~s----~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~~ 245 (258)
T 3clo_A 196 NILSEREKEILRCIR-K----GLS----SKEIAATLYISVNTVNRHRQNILEKLSVGNS 245 (258)
T ss_dssp TSSCHHHHHHHHHHH-T----TCC----HHHHHHHHTCCHHHHHHHHHHHHHHTTCSSH
T ss_pred ccCCHHHHHHHHHHH-c----CCC----HHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 469999999998763 3 222 3478999999999999999999999987643
No 127
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=26.77 E-value=31 Score=24.35 Aligned_cols=18 Identities=11% Similarity=0.399 Sum_probs=17.0
Q ss_pred HHHHHHhCCChhhhhhhh
Q 019170 292 ARLVQETGLQLKQINNWF 309 (345)
Q Consensus 292 ~~LA~~tgLs~kQV~nWF 309 (345)
..||+.+|++..-|+.|.
T Consensus 14 ~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 14 RAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHhCCCHHHHHHHH
Confidence 579999999999999998
No 128
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=26.76 E-value=32 Score=25.70 Aligned_cols=22 Identities=14% Similarity=0.388 Sum_probs=19.1
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019170 292 ARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 292 ~~LA~~tgLs~kQV~nWF~N~R 313 (345)
..||+.+|++...|+.|..+.+
T Consensus 26 ~~lA~~~gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 26 LEIAKSIGVSPQTFNTWCKGIA 47 (94)
T ss_dssp HHHHHHHTCCHHHHHHHHTTSC
T ss_pred HHHHHHHCcCHHHHHHHHhCCC
Confidence 4699999999999999998754
No 129
>1xc0_A Pardaxin P-4, PA4; BEND-helix-BEND-helix motif, signaling protein; NMR {Synthetic} SCOP: j.6.1.1 PDB: 2kns_A
Probab=26.73 E-value=60 Score=20.78 Aligned_cols=23 Identities=39% Similarity=0.535 Sum_probs=18.0
Q ss_pred HHHHHhhCCChHHHHHHHHhhhc
Q 019170 73 CKAEIVGHPLYEQLLSAHVSCLR 95 (345)
Q Consensus 73 lKa~I~sHPlYp~Ll~A~i~C~K 95 (345)
+-.+|++.|||.-||+|--..+.
T Consensus 5 lipkiissplfktllsavgsals 27 (33)
T 1xc0_A 5 LIPKIISSPLFKTLLSAVGSALS 27 (33)
T ss_dssp SHHHHTTTTTHHHHHHHHHHHTT
T ss_pred hhhHHHccHHHHHHHHHHHHHhh
Confidence 34689999999999998655443
No 130
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=25.74 E-value=35 Score=24.31 Aligned_cols=22 Identities=23% Similarity=0.157 Sum_probs=19.4
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019170 292 ARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 292 ~~LA~~tgLs~kQV~nWF~N~R 313 (345)
..||+.+|++...|..|..+.+
T Consensus 27 ~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 27 SELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHhCCCHHHHHHHHcCCC
Confidence 4799999999999999998754
No 131
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=25.70 E-value=32 Score=24.51 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=19.2
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019170 292 ARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 292 ~~LA~~tgLs~kQV~nWF~N~R 313 (345)
..||+.+|++...|+.|..+.+
T Consensus 19 ~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 19 KSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHhCCCHHHHHHHHcCCC
Confidence 4799999999999999987753
No 132
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=25.46 E-value=35 Score=25.30 Aligned_cols=23 Identities=0% Similarity=0.042 Sum_probs=19.9
Q ss_pred HHHHHHHhCCChhhhhhhhhhhh
Q 019170 291 KARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 291 K~~LA~~tgLs~kQV~nWF~N~R 313 (345)
...||+.+|++...|+.|..+.+
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 45799999999999999998753
No 133
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=25.29 E-value=1.1e+02 Score=23.11 Aligned_cols=40 Identities=18% Similarity=0.176 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhh
Q 019170 269 TTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQ 312 (345)
Q Consensus 269 ~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~ 312 (345)
....+..|...|+..| ++. ..||+..|++..++...|...
T Consensus 3 ~i~~~~~~i~~~~~~~-~~~---~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 3 AVRQVEEYIEANWMRP-ITI---EKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHHHHHTTSC-CCH---HHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccCC-CCH---HHHHHHHCCCHHHHHHHHHHH
Confidence 4566778888887777 554 468888899998888877653
No 134
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=25.24 E-value=15 Score=31.25 Aligned_cols=46 Identities=7% Similarity=0.048 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhcc
Q 019170 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNW 317 (345)
Q Consensus 264 ~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~k 317 (345)
.||+..+.+|.-.|... + .-.++|+.+|++...|.+++..+|++.|
T Consensus 198 ~L~~~~r~vl~l~~~~g----~----s~~EIA~~lgis~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 198 ELDERERLIVYLRYYKD----Q----TQSEVASRLGISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp ------------------------------------------------------
T ss_pred hCCHHHHHHHHHHHhcC----C----CHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 47888888887655442 2 2347999999999999999999888764
No 135
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=24.09 E-value=17 Score=28.20 Aligned_cols=25 Identities=16% Similarity=0.205 Sum_probs=8.5
Q ss_pred HhCCChhhhhhhhhhhhhhccccCC
Q 019170 297 ETGLQLKQINNWFINQRKRNWHANP 321 (345)
Q Consensus 297 ~tgLs~kQV~nWF~N~R~R~kk~~~ 321 (345)
+.+.+..+|-.||.+.|...+....
T Consensus 2 ~~~~~~~~~~~W~~~~r~~~~~~~~ 26 (97)
T 1b72_A 2 EPNTPTARTFDWMKVKRNPPKTAKV 26 (97)
T ss_dssp ------CCCCGGGGC----------
T ss_pred CCCCCCcccccccccccCCCCCCCC
Confidence 3567888999999999987665443
No 136
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=23.81 E-value=49 Score=26.04 Aligned_cols=53 Identities=9% Similarity=0.107 Sum_probs=39.8
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhccccC
Q 019170 264 KLPGDTTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHAN 320 (345)
Q Consensus 264 ~lpk~~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~kk~~ 320 (345)
.||+..+.++.-.|...-..++ .-.++|..+|++...|.+....++++.++..
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~~----s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~ 71 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTDY----TLEEVGKQFDVTRERIRQIEAKALRKLRHPS 71 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 4888899998776652100122 2357899999999999999999999988754
No 137
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=23.63 E-value=37 Score=24.33 Aligned_cols=22 Identities=14% Similarity=0.060 Sum_probs=19.3
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019170 292 ARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 292 ~~LA~~tgLs~kQV~nWF~N~R 313 (345)
..||+.+|++...|..|-.+.+
T Consensus 31 ~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 31 KELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHCcCHHHHHHHHCCCC
Confidence 4789999999999999998754
No 138
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=23.58 E-value=37 Score=24.87 Aligned_cols=21 Identities=10% Similarity=0.229 Sum_probs=19.0
Q ss_pred HHHHHHhCCChhhhhhhhhhh
Q 019170 292 ARLVQETGLQLKQINNWFINQ 312 (345)
Q Consensus 292 ~~LA~~tgLs~kQV~nWF~N~ 312 (345)
..||+.+|++...|..|..+.
T Consensus 34 ~~lA~~~gis~~~is~~e~g~ 54 (92)
T 1lmb_3 34 ESVADKMGMGQSGVGALFNGI 54 (92)
T ss_dssp HHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHCcCHHHHHHHHcCC
Confidence 479999999999999999875
No 139
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=23.34 E-value=1.2e+02 Score=24.38 Aligned_cols=61 Identities=11% Similarity=0.049 Sum_probs=39.8
Q ss_pred HHHHHhhhcCCCCCChhHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhh
Q 019170 252 IREEILRKRRAGKLPGDTTSLLKAWWLSH-AKWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 315 (345)
Q Consensus 252 lr~e~~kkrkr~~lpk~~~~iL~~Wf~~H-~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R 315 (345)
+...+...-++-.++.....+|...+..+ ...||||.. .||+.+|++...|..-+..-=++
T Consensus 17 i~~~ll~~y~~lgLt~~e~~vll~L~~~~~~~~~~ps~~---~LA~~l~~s~~~V~~~l~~Le~k 78 (128)
T 2vn2_A 17 VPKLLLGHYKQLGLGEGELVLLLHMQSFFEEGVLFPTPA---ELAERMTVSAAECMEMVRRLLQK 78 (128)
T ss_dssp EEHHHHTTTTTTTCCHHHHHHHHHHHHHHTTTCSSCCHH---HHHHTSSSCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCCCHH---HHHHHHCcCHHHHHHHHHHHHHC
Confidence 33444455455567777766664444332 246889876 58999999999998877654443
No 140
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=22.56 E-value=42 Score=24.85 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=17.0
Q ss_pred HHHHHHhCCChhhhhhhhh
Q 019170 292 ARLVQETGLQLKQINNWFI 310 (345)
Q Consensus 292 ~~LA~~tgLs~kQV~nWF~ 310 (345)
..||+.+|++...|.+|..
T Consensus 26 ~~LA~~~Gvs~stls~~~~ 44 (74)
T 1neq_A 26 SALSRQFGYAPTTLANALE 44 (74)
T ss_dssp HHHHHHHSSCHHHHHHTTT
T ss_pred HHHHHHHCcCHHHHHHHHc
Confidence 3699999999999999965
No 141
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=22.23 E-value=1.1e+02 Score=23.33 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCChhhhhhhhhh
Q 019170 269 TTSLLKAWWLSHAKWPYPTEEDKARLVQETGLQLKQINNWFIN 311 (345)
Q Consensus 269 ~~~iL~~Wf~~H~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N 311 (345)
....+..|...|+..| ++. ..||+.+|++..++...|.-
T Consensus 8 ~i~~~~~~i~~~~~~~-~~~---~~lA~~~~~S~~~l~r~fk~ 46 (113)
T 3oio_A 8 KLTEAVSLMEANIEEP-LST---DDIAYYVGVSRRQLERLFKQ 46 (113)
T ss_dssp HHHHHHHHHHTCSSSC-CCH---HHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCC-CCH---HHHHHHHCcCHHHHHHHHHH
Confidence 4566778888887777 554 46888889998888877764
No 142
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=22.21 E-value=45 Score=24.75 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=19.6
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019170 292 ARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 292 ~~LA~~tgLs~kQV~nWF~N~R 313 (345)
..||+.+|++...|+.|..+.+
T Consensus 21 ~~lA~~~gis~~~is~~e~g~~ 42 (99)
T 2l49_A 21 QQLADLTGVPYGTLSYYESGRS 42 (99)
T ss_dssp HHHHHHHCCCHHHHHHHTTTSS
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 5799999999999999998754
No 143
>2w9j_A Signal recognition particle subunit SRP14; radiation-induced phasing, RNA-BI ribonucleoprotein, signaling P arsenic, ALU-domain; 2.60A {Schizosaccharomyces pombe}
Probab=22.04 E-value=47 Score=26.26 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=17.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHH
Q 019170 131 DKELDQFMTHYVLLLYSFKEQL 152 (345)
Q Consensus 131 dpELDqFMeaYc~vL~kykEEL 152 (345)
..+|+.|+.+|+.+|...=.-|
T Consensus 64 ~~~l~~F~~~Y~~v~K~~M~~L 85 (91)
T 2w9j_A 64 LDYFTDFFQSYAEVXKGQIVGL 85 (91)
T ss_dssp GGGHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHhCCccc
Confidence 5899999999999998654443
No 144
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=21.93 E-value=2.3e+02 Score=22.86 Aligned_cols=48 Identities=27% Similarity=0.346 Sum_probs=29.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhHH---------hhhhHHHHHHHHHHHHHHhhhhc
Q 019170 131 DKELDQFMTHYVLLLYSFKEQLQQH---------VRVHAMEAVMACWDLEQSLQSLT 178 (345)
Q Consensus 131 dpELDqFMeaYc~vL~kykEEL~kP---------~~~~~~EA~~f~~~iE~QL~sL~ 178 (345)
.-|+|..-.+.=+...||.+|+..- +++..+++++.--.+|.++.+|.
T Consensus 40 ~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~ 96 (119)
T 3ol1_A 40 EVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 96 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 3455555555555555666665442 22455677776667888888887
No 145
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=21.21 E-value=49 Score=22.09 Aligned_cols=21 Identities=5% Similarity=0.317 Sum_probs=17.9
Q ss_pred HHHHHHHhCCChhhhhhhhhh
Q 019170 291 KARLVQETGLQLKQINNWFIN 311 (345)
Q Consensus 291 K~~LA~~tgLs~kQV~nWF~N 311 (345)
..++|+.+|++...|..|+..
T Consensus 34 ~~eIA~~lgis~~TV~~~l~~ 54 (55)
T 2x48_A 34 VQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp HHHHHHHHTSCHHHHHHHHTC
T ss_pred HHHHHHHHCcCHHHHHHHHHh
Confidence 457899999999999999853
No 146
>1e8o_B SRP14, signal recognition particle 14 kDa protein; ALU ribonucleoprotein particle, protein recognition of AN RNA U-turn, translational control; HET: GDP; 3.20A {Homo sapiens} SCOP: d.49.1.1 PDB: 1e8s_B 1ry1_D*
Probab=21.14 E-value=46 Score=26.93 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=15.9
Q ss_pred ChHHHHHHHHHHHHHHHH
Q 019170 131 DKELDQFMTHYVLLLYSF 148 (345)
Q Consensus 131 dpELDqFMeaYc~vL~ky 148 (345)
..+|+.|+.+|+.||...
T Consensus 72 ~~dl~~F~~~Y~~v~K~~ 89 (106)
T 1e8o_B 72 SKEVNKFQMAYSNLLRAN 89 (106)
T ss_dssp TTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 589999999999999754
No 147
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=20.92 E-value=2.3e+02 Score=21.47 Aligned_cols=52 Identities=8% Similarity=0.134 Sum_probs=41.1
Q ss_pred hcCCCCCChhHHHHHHHHHHHh--cCCCCCCHHHHHHHHHHhC--CChhhhhhhhh
Q 019170 259 KRRAGKLPGDTTSLLKAWWLSH--AKWPYPTEEDKARLVQETG--LQLKQINNWFI 310 (345)
Q Consensus 259 krkr~~lpk~~~~iL~~Wf~~H--~~~PYPs~~eK~~LA~~tg--Ls~kQV~nWF~ 310 (345)
.++...|+.+....|+.+|... -.+.|.+..|-..+.+..| ++..+|..+|.
T Consensus 24 ~~~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 24 EQRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp TCSCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred hcccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3455689999999999999874 3578999999988888887 56677777775
No 148
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=20.65 E-value=48 Score=25.29 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=18.8
Q ss_pred HHHHHHhCCChhhhhhhhhhh
Q 019170 292 ARLVQETGLQLKQINNWFINQ 312 (345)
Q Consensus 292 ~~LA~~tgLs~kQV~nWF~N~ 312 (345)
.+||+.+|++...|..|..++
T Consensus 41 ~eLA~~~GiS~~tis~iE~G~ 61 (88)
T 3t76_A 41 GELREAVGVSKSTFAKLGKNE 61 (88)
T ss_dssp HHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHCcCHHHHHHHHcCC
Confidence 479999999999999999884
No 149
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=20.49 E-value=47 Score=23.79 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=19.1
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019170 292 ARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 292 ~~LA~~tgLs~kQV~nWF~N~R 313 (345)
..||+.+|++...|..|-.+.+
T Consensus 28 ~~lA~~~gis~~~i~~~e~g~~ 49 (82)
T 3s8q_A 28 EDLAYKSNLDRTYISGIERNSR 49 (82)
T ss_dssp HHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHhCcCHHHHHHHHCCCC
Confidence 4789999999999999987763
No 150
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=20.28 E-value=54 Score=27.16 Aligned_cols=51 Identities=14% Similarity=0.089 Sum_probs=37.8
Q ss_pred CCCChhHHHHHHHHHHHh-cCCCCCCHHHHHHHHHHhCCChhhhhhhhhhhhhhc
Q 019170 263 GKLPGDTTSLLKAWWLSH-AKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRN 316 (345)
Q Consensus 263 ~~lpk~~~~iL~~Wf~~H-~~~PYPs~~eK~~LA~~tgLs~kQV~nWF~N~R~R~ 316 (345)
-.++....-+|...+..+ ..+|+||.+ .||+.+|++..+|...+.+--.+-
T Consensus 28 LgLs~~E~~lLl~L~~~~~~g~~~ps~~---~LA~~~~~s~~~v~~~L~~L~~KG 79 (135)
T 2v79_A 28 LGLNETELILLLKIKMHLEKGSYFPTPN---QLQEGMSISVEECTNRLRMFIQKG 79 (135)
T ss_dssp HTCCHHHHHHHHHHHHHHTTTCCSCCHH---HHHTTSSSCHHHHHHHHHHHHHHT
T ss_pred hCCCHHHHHHHHHHHHHHhcCCCCCCHH---HHHHHHCcCHHHHHHHHHHHHHCC
Confidence 356777766666555543 236999986 599999999999999988765543
No 151
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=20.19 E-value=50 Score=24.26 Aligned_cols=22 Identities=9% Similarity=0.099 Sum_probs=19.3
Q ss_pred HHHHHHhCCChhhhhhhhhhhh
Q 019170 292 ARLVQETGLQLKQINNWFINQR 313 (345)
Q Consensus 292 ~~LA~~tgLs~kQV~nWF~N~R 313 (345)
..||+.+|++...|..|..+.+
T Consensus 30 ~~lA~~~gis~~~is~~e~g~~ 51 (91)
T 1x57_A 30 KDLATKINEKPQVIADYESGRA 51 (91)
T ss_dssp HHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHCcCHHHHHHHHcCCC
Confidence 4699999999999999998764
Done!