Citrus Sinensis ID: 019171

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-----
Protein Sequence
MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKEKAREEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRERDRERSREWDGRSGRDGGRGADWRSRDRHRDRSRSRSPVRHGHRRSPRSPVRQY
Secondary Structure (PSIPRED)
cHHHHHHHHHHccccccccHHHHHHHccccccccccccHHHccccHHHHHHccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHcccccHHccccHHHcccccccccHHHHHHHHHccHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcccEEEHHHHHHHHccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MDAQRALLDELMGAARNLTEEEKKEYKEikwddkevcpfymvrfcphdlfvntrsdlgpcprihdqklkesfeksprhdayvpKFEAELAQFCEKLVMDLDRRVRRGRerlsqevepappppisaeksEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFLVANDAaertqshisgkqhigyGMVRDFITEYKEAKEKAREEERLAKEKEVEDRRKQREKEYESrkrsgssdrdryrdrdrdRERERYRERDrersrewdgrsgrdggrgadwrsrdrhrdrsrsrspvrhghrrsprspvrqy
Flexible Loop (DISEMBL)
MDAQRALLDElmgaarnlteeekkeykeikwddkeVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRerlsqevepappppisaekseQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEIlnvekttltqqsqndKVLMMAQEKKMALCEICGSFLVANDAAERTqshisgkqhigygmVRDFITEYKEAKEkareeerlakekevedrrkqrekeyesrkrsgssdrdryrdrdrdrereryrerdrersrewdgrsgrdggrgadwrsrdrhrdrsrsrspvrhghrrsprspvrqy
Low Complexity Region (SEG)
MDAQRALLDELMGAARNLTeeekkeykeikwddkeVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDrrvrrgrerLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITeykeakekareeerlakekeveDRRKQREKEYesrkrsgssdrdryrdrdrdrereryrerdrersrewdgrsgrdggrgadwrsrdrhrdrsrsrsPVRHGHRRSPRSPVRQY
Disordered region (IsUnstruct)
*************************YKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPCPR*****************AYVPKFEAELAQFCEKLVMDL**********************************************************ALMRKVEILNVEKT**********VLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEY****************************************************************************************************************
Disordered Region (DISOPRED)
*DAQRALLDELMGAA***************WDDKEVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQKLK*************PKFEAELAQFCEKLVMDLDRRVRR***************************LEEKIKNLLEQVETLGEAGKVDEAEALMRKVE*****************************CEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFI*******************************************************************************************************************
Disordered Region (DISEMBL)
MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRG********************SEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKE**************************************************************************************************************
Disordered Region (DISPRO)
***************************EIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQN**VLMMA*EKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKEKAREEE*****************************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
xxxxxxxxxxxxxxxxxxxxxEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPIxxxxxxxxxxxxxxxxxxxxxxxxxxxxGKVDExxxxxxxxxxxxxxxxxxxxxSQNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMxxxxxxxxxxxxxxxxxxxxxxxxxxxxDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRERDRERSREWDGRSGRDGGRGADWRSRDRHRDRSRSRSPVRHGHRRSPRSPVRQY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	345	2.2.26 [Sep-21-2011]
Q5R8W6	432	Luc7-like protein 3 OS=Po	yes	no	0.689	0.550	0.408	5e-49
O95232	432	Luc7-like protein 3 OS=Ho	yes	no	0.689	0.550	0.408	5e-49
Q3SX41	432	Luc7-like protein 3 OS=Bo	yes	no	0.689	0.550	0.408	8e-49
Q5SUF2	432	Luc7-like protein 3 OS=Mu	yes	no	0.689	0.550	0.408	1e-48
Q54XQ8	360	Luc7-like protein OS=Dict	yes	no	0.666	0.638	0.330	3e-35
Q9CYI4	371	Putative RNA-binding prot	no	no	0.634	0.590	0.336	6e-30
Q9NQ29	371	Putative RNA-binding prot	no	no	0.634	0.590	0.336	7e-30
Q7TNC4	392	Putative RNA-binding prot	no	no	0.655	0.576	0.316	3e-28
Q9Y383	392	Putative RNA-binding prot	no	no	0.655	0.576	0.316	3e-28
Q9USM4	264	U1 snRNP-associated prote	yes	no	0.652	0.852	0.28	6e-19

>sp|Q5R8W6|LC7L3_PONAB Luc7-like protein 3 OS=Pongo abelii GN=LUC7L3 PE=2 SV=1

 Score =  195 bits (495), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 100/245 (40%), Positives = 150/245 (61%), Gaps = 7/245 (2%)

Query: 1   MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPC 60
           M +   LLDELMG  RNL  +EK+    ++WD + VC +Y+  FCP +LF NTRSDLGPC
Sbjct: 1   MISAAQLLDELMGRDRNLAPDEKR--SNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPC 58

Query: 61  PRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERL--SQEVEPA 118
            +IHD+ L++ +EKS R       +E +  ++ + L+ +++RR+RRG  RL  SQ  + +
Sbjct: 59  EKIHDENLRKQYEKSSRF--MKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSS 116

Query: 119 PPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQS 178
                + +  E++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE L  E+  L   +
Sbjct: 117 GAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTT 176

Query: 179 QNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKE 238
              +    AQEK+M +CE+CG+FL+  DA  R   H+ GKQH+GY  ++  + E KE   
Sbjct: 177 STIESFA-AQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLR 235

Query: 239 KAREE 243
           K  EE
Sbjct: 236 KRTEE 240

Binds cAMP regulatory element DNA sequence. May play a role in RNA splicing.
Pongo abelii (taxid: 9601)

>sp|O95232|LC7L3_HUMAN Luc7-like protein 3 OS=Homo sapiens GN=LUC7L3 PE=1 SV=2

 Score =  195 bits (495), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 100/245 (40%), Positives = 150/245 (61%), Gaps = 7/245 (2%)

Query: 1   MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPC 60
           M +   LLDELMG  RNL  +EK+    ++WD + VC +Y+  FCP +LF NTRSDLGPC
Sbjct: 1   MISAAQLLDELMGRDRNLAPDEKR--SNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPC 58

Query: 61  PRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERL--SQEVEPA 118
            +IHD+ L++ +EKS R       +E +  ++ + L+ +++RR+RRG  RL  SQ  + +
Sbjct: 59  EKIHDENLRKQYEKSSRF--MKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSS 116

Query: 119 PPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQS 178
                + +  E++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE L  E+  L   +
Sbjct: 117 GAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTT 176

Query: 179 QNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKE 238
              +    AQEK+M +CE+CG+FL+  DA  R   H+ GKQH+GY  ++  + E KE   
Sbjct: 177 STIESFA-AQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLR 235

Query: 239 KAREE 243
           K  EE
Sbjct: 236 KRTEE 240

Binds cAMP regulatory element DNA sequence. May play a role in RNA splicing.

Homo sapiens (taxid: 9606)

>sp|Q3SX41|LC7L3_BOVIN Luc7-like protein 3 OS=Bos taurus GN=LUC7L3 PE=2 SV=1

 Score =  194 bits (493), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 100/245 (40%), Positives = 150/245 (61%), Gaps = 7/245 (2%)

Query: 1   MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPC 60
           M +   LLDELMG  RNL  +EK+    ++WD + VC +Y+  FCP +LF NTRSDLGPC
Sbjct: 1   MISAAQLLDELMGRDRNLAPDEKR--SNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPC 58

Query: 61  PRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERL--SQEVEPA 118
            +IHD+ L++ +EKS R       +E +  ++ + L+ +++RR+RRG  RL  SQ  + +
Sbjct: 59  EKIHDENLRKQYEKSSRF--MKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSS 116

Query: 119 PPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQS 178
                + +  E++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE L  E+  L   +
Sbjct: 117 GAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTT 176

Query: 179 QNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKE 238
              +    AQEK+M +CE+CG+FL+  DA  R   H+ GKQH+GY  ++  + E KE   
Sbjct: 177 STIESFA-AQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLR 235

Query: 239 KAREE 243
           K  EE
Sbjct: 236 KRTEE 240

Binds cAMP regulatory element DNA sequence. May play a role in RNA splicing.

Bos taurus (taxid: 9913)

>sp|Q5SUF2|LC7L3_MOUSE Luc7-like protein 3 OS=Mus musculus GN=Luc7l3 PE=1 SV=1

 Score =  193 bits (491), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 100/245 (40%), Positives = 150/245 (61%), Gaps = 7/245 (2%)

Query: 1   MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPC 60
           M +   LLDELMG  RNL  +EK+    ++WD + VC +Y+  FCP +LF NTRSDLGPC
Sbjct: 1   MISAAQLLDELMGRDRNLAPDEKR--SNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPC 58

Query: 61  PRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERL--SQEVEPA 118
            +IHD+ L++ +EKS R       +E +  ++ + L+ +++RR+RRG  RL  SQ  + +
Sbjct: 59  EKIHDENLRKQYEKSSRF--MKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSS 116

Query: 119 PPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQS 178
                + +  E++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE L  E+  L   +
Sbjct: 117 GAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTT 176

Query: 179 QNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKE 238
              +    AQEK+M +CE+CG+FL+  DA  R   H+ GKQH+GY  ++  + E KE   
Sbjct: 177 STIESFA-AQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLR 235

Query: 239 KAREE 243
           K  EE
Sbjct: 236 KRTEE 240

Binds cAMP regulatory element DNA sequence. May play a role in RNA splicing.

Mus musculus (taxid: 10090)

>sp|Q54XQ8|LUC7L_DICDI Luc7-like protein OS=Dictyostelium discoideum GN=crop PE=3 SV=1

 Score =  149 bits (376), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 87/263 (33%), Positives = 147/263 (55%), Gaps = 33/263 (12%)

Query: 1   MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRS-DLGP 59
           MDA RA LDE +G  RNL  +++ +  E  ++D ++C F++   CPH+LF N    DLGP
Sbjct: 1   MDAIRAQLDEFLGKDRNLLPKDRIKV-ENDFNDPDICKFFLCGLCPHELFTNANIRDLGP 59

Query: 60  CPRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVE--- 116
           C ++HD+   + ++ +   D Y   +E E  +  E L+ D D++++R +ERL Q      
Sbjct: 60  CSKLHDENCVKQYQNNKDKDKY--DYEREWVRVIEGLISDNDKKIKRNKERLLQNPNGDA 117

Query: 117 -----PAPPPPISA------------EKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEA 159
                P     IS             E++ +++ L+ KI+ LL++ E LGE G++ EA+A
Sbjct: 118 NHHGGPIQQQSISQLDDEEGGLLPDKEQNSKITELDLKIQELLKKAEELGEEGQITEAQA 177

Query: 160 LMRKVEILNVEKTTL--TQQSQNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISG 217
           LM + + L  +K  L   +Q +N       + K+M++CEICG+ L   D  +R+ SH+ G
Sbjct: 178 LMTEADELKNQKVELEKIEQEKN-------ENKRMSVCEICGALLFVGDKEKRSISHLEG 230

Query: 218 KQHIGYGMVRDFITEYKEAKEKA 240
           K+HIG+  +R+ + EY ++  +A
Sbjct: 231 KKHIGFQKIREVMEEYYKSGRRA 253

May play a role in RNA splicing.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9CYI4|LUC7L_MOUSE Putative RNA-binding protein Luc7-like 1 OS=Mus musculus GN=Luc7l PE=2 SV=2

 Score =  132 bits (331), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 127/232 (54%), Gaps = 13/232 (5%)

Query: 1   MDAQ---RALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDL 57
           M AQ   RALLD+LMG AR+  E  ++    +K+ D  VC  +++  CPHD+   TR DL
Sbjct: 1   MSAQAQMRALLDQLMGTARDGDETRQR----VKFTDDRVCKSHLLDCCPHDILAGTRMDL 56

Query: 58  GPCPRIHDQKLKESFE-KSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVE 116
           G C +IHD  L+  +E  S   D +   FE +     E  + + DRR    ++RL+ E +
Sbjct: 57  GECTKIHDLALRADYEIASKERDLF---FELDAMDHLESFIAECDRRTELAKKRLA-ETQ 112

Query: 117 PAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQ 176
                 +SA K+E++  L E+I  LL + E LG  G VDE++ ++ +VE +  +K    +
Sbjct: 113 EEISAEVSA-KAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEE 171

Query: 177 QSQNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRD 228
           + +N       Q++K+ +CE+C ++L  +D   R   H  GK H+G+  +R+
Sbjct: 172 EYRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIRE 223

May bind to RNA via its Arg/Ser-rich domain.

Mus musculus (taxid: 10090)

>sp|Q9NQ29|LUC7L_HUMAN Putative RNA-binding protein Luc7-like 1 OS=Homo sapiens GN=LUC7L PE=1 SV=1

 Score =  131 bits (330), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 127/232 (54%), Gaps = 13/232 (5%)

Query: 1   MDAQ---RALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDL 57
           M AQ   RALLD+LMG AR+  E  ++    +K+ D  VC  +++  CPHD+   TR DL
Sbjct: 1   MSAQAQMRALLDQLMGTARDGDETRQR----VKFTDDRVCKSHLLDCCPHDILAGTRMDL 56

Query: 58  GPCPRIHDQKLKESFE-KSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVE 116
           G C +IHD  L+  +E  S   D +   FE +     E  + + DRR    ++RL+ E +
Sbjct: 57  GECTKIHDLALRADYEIASKERDLF---FELDAMDHLESFIAECDRRTELAKKRLA-ETQ 112

Query: 117 PAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQ 176
                 +SA K+E++  L E+I  LL + E LG  G VDE++ ++ +VE +  +K    +
Sbjct: 113 EEISAEVSA-KAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEE 171

Query: 177 QSQNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRD 228
           + +N       Q++K+ +CE+C ++L  +D   R   H  GK H+G+  +R+
Sbjct: 172 EYRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIRE 223

May bind to RNA via its Arg/Ser-rich domain.

Homo sapiens (taxid: 9606)

>sp|Q7TNC4|LC7L2_MOUSE Putative RNA-binding protein Luc7-like 2 OS=Mus musculus GN=Luc7l2 PE=1 SV=1

 Score =  126 bits (316), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 126/237 (53%), Gaps = 11/237 (4%)

Query: 1   MDAQ---RALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDL 57
           M AQ   RA+LD+LMG +R+     ++    IK+ D  VC  +++  CPHD+   TR DL
Sbjct: 1   MSAQAQMRAMLDQLMGTSRDGDTTRQR----IKFSDDRVCKSHLLNCCPHDVLSGTRMDL 56

Query: 58  GPCPRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEP 117
           G C ++HD  L+  +E + +   +   FE +     +  + D DRR    ++RL++  E 
Sbjct: 57  GECLKVHDLALRADYEIASKEQDFF--FELDAMDHLQSFIADCDRRTEVSKKRLAETQEE 114

Query: 118 APPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQ 177
                  A K+E++  L E+I  LL +VE LG  G V+E++ +M +VE    +K    + 
Sbjct: 115 ISAEV--AAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEV 172

Query: 178 SQNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYK 234
            +N       Q++K+ +CE+C ++L  +D   R   H  GK H+G+  +R+ + E K
Sbjct: 173 YRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELK 229

May bind to RNA via its Arg/Ser-rich domain.

Mus musculus (taxid: 10090)

>sp|Q9Y383|LC7L2_HUMAN Putative RNA-binding protein Luc7-like 2 OS=Homo sapiens GN=LUC7L2 PE=1 SV=2

 Score =  125 bits (315), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 126/237 (53%), Gaps = 11/237 (4%)

Query: 1   MDAQ---RALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDL 57
           M AQ   RA+LD+LMG +R+     ++    IK+ D  VC  +++  CPHD+   TR DL
Sbjct: 1   MSAQAQMRAMLDQLMGTSRDGDTTRQR----IKFSDDRVCKSHLLNCCPHDVLSGTRMDL 56

Query: 58  GPCPRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEP 117
           G C ++HD  L+  +E + +   +   FE +     +  + D DRR    ++RL++  E 
Sbjct: 57  GECLKVHDLALRADYEIASKEQDFF--FELDAMDHLQSFIADCDRRTEVAKKRLAETQEE 114

Query: 118 APPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQ 177
                  A K+E++  L E+I  LL +VE LG  G V+E++ +M +VE    +K    + 
Sbjct: 115 ISAEV--AAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREAEEV 172

Query: 178 SQNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYK 234
            +N       Q++K+ +CE+C ++L  +D   R   H  GK H+G+  +R+ + E K
Sbjct: 173 YRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELK 229

May bind to RNA via its Arg/Ser-rich domain.

Homo sapiens (taxid: 9606)

>sp|Q9USM4|LUC7_SCHPO U1 snRNP-associated protein usp106 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=usp106 PE=1 SV=1

 Score = 95.1 bits (235), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 127/250 (50%), Gaps = 25/250 (10%)

Query: 4   QRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPCPRI 63
           QR ++++LMG+  NL+    +    + + D++VC  ++   CPHD+F NT+ DLGPCP+I
Sbjct: 5   QRKIIEQLMGS--NLSNFTSRGL--VHFTDRKVCRSFLCGICPHDIFTNTKMDLGPCPKI 60

Query: 64  HDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPI 123
           H  KLK  +E++     Y   +E +  +  E+ V D ++R+     R  +  E       
Sbjct: 61  HSDKLKSDYERASYSHDY--GYEWDYLEDLERHVDDCNKRIDIAEARREKTKEEEERID- 117

Query: 124 SAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKV 183
             E    +   +  I+ ++ ++E L +   V++A   ++    LN  KT   ++   D+V
Sbjct: 118 --ELMRDIIHTDHSIEVIITEMEALAKRKLVNDA---VKHFIELNRLKT--YRKELYDEV 170

Query: 184 LMM--------AQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYK- 234
           + M           +K+ +C+IC ++L   D   R   H SGK H+GY M+R+   + + 
Sbjct: 171 ISMNEIPSQASTTHQKLQVCDICSAYLSRLDNDRRLADHFSGKMHLGYAMLRNIARDLRA 230

Query: 235 --EAKEKARE 242
             E +EK+R+
Sbjct: 231 QLEDREKSRD 240

Component of the U1 snRNP particle, which recognizes and binds the 5'-splice site of pre-mRNA. Together with other non-snRNP factors, U1 snRNP forms the spliceosomal commitment complex, that targets pre-mRNA to the splicing pathway.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	345
30524685	342	salt tolerance protein 3 [Beta vulgaris]	0.947	0.956	0.774	1e-133
217073848	344	unknown [Medicago truncatula]	0.971	0.973	0.763	1e-131
255539781	348	Cisplatin resistance-associated overexpr	0.979	0.971	0.774	1e-130
297795951	334	hypothetical protein ARALYDRAFT_495212 [	0.965	0.997	0.742	1e-129
225466119	358	PREDICTED: luc7-like protein 3-like [Vit	1.0	0.963	0.832	1e-128
296084210	336	unnamed protein product [Vitis vinifera]	0.965	0.991	0.839	1e-127
449451769	347	PREDICTED: luc7-like protein 3-like [Cuc	0.889	0.884	0.819	1e-125
15242081	334	LUC7 N_terminus domain-containing protei	0.968	1.0	0.724	1e-125
449506483	347	PREDICTED: LOW QUALITY PROTEIN: luc7-lik	0.889	0.884	0.816	1e-125
147783651	363	hypothetical protein VITISV_039964 [Viti	0.788	0.749	0.893	1e-123

>gi|30524685|emb|CAC85244.1| salt tolerance protein 3 [Beta vulgaris]

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 272/351 (77%), Positives = 296/351 (84%), Gaps = 24/351 (6%)

Query: 1   MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPC 60
           MDAQRALLDELMGAARNLT+EEKK Y+EIKWDDKEVC  YM+RFCPHDLFVNTRSDLGPC
Sbjct: 1   MDAQRALLDELMGAARNLTDEEKKGYREIKWDDKEVCAPYMIRFCPHDLFVNTRSDLGPC 60

Query: 61  PRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPP 120
           PR+HDQKLKESFE SPRHD+YVP+FEAELAQFCEKLV DLDR+VRRGRERL QEVEP PP
Sbjct: 61  PRVHDQKLKESFENSPRHDSYVPRFEAELAQFCEKLVADLDRKVRRGRERLDQEVEPPPP 120

Query: 121 PPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQN 180
           PPISAEK+EQLSVLEEKIKNLLEQVE+LGEAGKVDEAEALMRKVE LN+EK  LTQQ QN
Sbjct: 121 PPISAEKAEQLSVLEEKIKNLLEQVESLGEAGKVDEAEALMRKVESLNLEKAALTQQPQN 180

Query: 181 DKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKEKA 240
               M+ QEKKMALCEICGSFLVANDA ERTQSHI+GKQHIGYGMVRD++ EYKEAKEKA
Sbjct: 181 -AATMLTQEKKMALCEICGSFLVANDAVERTQSHITGKQHIGYGMVRDYLAEYKEAKEKA 239

Query: 241 REEERLAKEKEVEDRRKQREKEYESR-KRSGSSDRDRYRDRDRDRERERYRERDRERSRE 299
           REEERLA+EKE E+RRKQREKE ES+ +RS SS+RDR+RDRD  R        DRERSRE
Sbjct: 240 REEERLAREKEAEERRKQREKENESKNRRSISSERDRHRDRDYGR--------DRERSRE 291

Query: 300 WDGRSGRDGGRGADWRSR-DRH-RDRSRS------------RSPVRHGHRR 336
           W+ R  RD GRG D R + DR+ RD  R+            RSPVRHGHRR
Sbjct: 292 WNNRGNRDEGRGMDRRRQYDRNGRDGGRNTYHGRERERSRSRSPVRHGHRR 342

Source: Beta vulgaris

Species: Beta vulgaris

Genus: Beta

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073848|gb|ACJ85284.1| unknown [Medicago truncatula]

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 264/346 (76%), Positives = 309/346 (89%), Gaps = 11/346 (3%)

Query: 1   MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPC 60
           MDAQRALLDELMG+ARN+TEEE++ YKE+ WDDKEVC FYMVRFCPHDLFVNTRSDLG C
Sbjct: 1   MDAQRALLDELMGSARNMTEEERRGYKEVSWDDKEVCGFYMVRFCPHDLFVNTRSDLGAC 60

Query: 61  PRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPP 120
           P++HD KLKE+FE SPRHDAYVPKFEA+LAQFCEKLVMDLDRRV+RGRERL+QEVE  PP
Sbjct: 61  PKVHDPKLKENFENSPRHDAYVPKFEADLAQFCEKLVMDLDRRVKRGRERLNQEVELPPP 120

Query: 121 PPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQN 180
           PP++AEKSEQLSVLEEKIKNLLEQVE+LGEAGKVDEAEALMRKVE LN EK  LT Q QN
Sbjct: 121 PPLTAEKSEQLSVLEEKIKNLLEQVESLGEAGKVDEAEALMRKVETLNTEKAVLT-QPQN 179

Query: 181 DKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKEKA 240
           +KVLM+ QEKKMALCE+CGSFLVANDAAERTQSH++GKQH+GYGMVRDFI E+K AKEKA
Sbjct: 180 EKVLML-QEKKMALCEVCGSFLVANDAAERTQSHVAGKQHVGYGMVRDFINEHKIAKEKA 238

Query: 241 REEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRER--DRERSR 298
           +EEERL +EKEVE+RRKQ+E++ E ++RS SSDR++YRD+DRDR+R+RYR++  +RERSR
Sbjct: 239 KEEERLTREKEVEERRKQKEQDPERKRRSDSSDREKYRDKDRDRQRDRYRDKDSERERSR 298

Query: 299 EWDGRSGRDGGRGADWR-------SRDRHRDRSRSRSPVRHGHRRS 337
           E++GR  RD GRG  +R       SRDR+ +RSRSRSP++H +RRS
Sbjct: 299 EYEGRGNRDRGRGMVFRLRNEKNGSRDRYHNRSRSRSPIKHNYRRS 344

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539781|ref|XP_002510955.1| Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis] gi|223550070|gb|EEF51557.1| Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 271/350 (77%), Positives = 302/350 (86%), Gaps = 12/350 (3%)

Query: 1   MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPC 60
           MD QRA+LDELMGA RNLTEE++K+YKEI WD KEVCP+YM RFCPHDLFVNT+SDLGPC
Sbjct: 1   MDLQRAMLDELMGADRNLTEEQRKDYKEITWDSKEVCPYYMARFCPHDLFVNTKSDLGPC 60

Query: 61  PRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPP 120
            RIHD KLKE FEKSPRHD Y+PKFEAELAQ CEKLVMDLDRRVRRGRERL+Q  EP PP
Sbjct: 61  DRIHDPKLKEGFEKSPRHDRYLPKFEAELAQRCEKLVMDLDRRVRRGRERLAQGEEPIPP 120

Query: 121 PPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQN 180
           PP+SAEKSEQLSV+EEKIKNLL QVE+LGEAGKVDEA+ALM+KV+ LN EK  +  Q Q+
Sbjct: 121 PPMSAEKSEQLSVVEEKIKNLLVQVESLGEAGKVDEAQALMKKVDELNAEKALI--QLQS 178

Query: 181 DKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKEKA 240
           DKVLM+ QEKKMALCEICGSFLVANDAAERTQSH+ GKQHIGYGMVRDFITEYK AKEKA
Sbjct: 179 DKVLMIPQEKKMALCEICGSFLVANDAAERTQSHVVGKQHIGYGMVRDFITEYKAAKEKA 238

Query: 241 REEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRE--RERYRERDRERSR 298
           +E+ERLA+EKE E+RRK REKEYE R+RSGS+DRDR  DRDRDRE  R + RER RERSR
Sbjct: 239 KEDERLAREKEAEERRKLREKEYE-RRRSGSNDRDRSHDRDRDRESHRFQERERGRERSR 297

Query: 299 EWDGRSGRDGGRGADWRS-------RDRHRDRSRSRSPVRHGHRRSPRSP 341
           EW+GR   DGG+  DWRS       RD++R+ SRSRSPVRHGH+RS RSP
Sbjct: 298 EWNGRGSGDGGKRMDWRSRNGRDSGRDKYREWSRSRSPVRHGHKRSSRSP 347

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795951|ref|XP_002865860.1| hypothetical protein ARALYDRAFT_495212 [Arabidopsis lyrata subsp. lyrata] gi|297311695|gb|EFH42119.1| hypothetical protein ARALYDRAFT_495212 [Arabidopsis lyrata subsp. lyrata]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 257/346 (74%), Positives = 289/346 (83%), Gaps = 13/346 (3%)

Query: 1   MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPC 60
           MDAQRALLDELMGAARNLT+EE++ +KE+KWDD+EVC FYMVRFCPHDLFVNT+SDLG C
Sbjct: 1   MDAQRALLDELMGAARNLTDEERRGFKEVKWDDREVCAFYMVRFCPHDLFVNTKSDLGAC 60

Query: 61  PRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPP 120
            RIHD KLKESFE SPRHD+YVPKFEAELAQFCEKLV DLDR+VRRGRERL+QEVEP PP
Sbjct: 61  SRIHDPKLKESFENSPRHDSYVPKFEAELAQFCEKLVNDLDRKVRRGRERLAQEVEPPPP 120

Query: 121 PPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQN 180
           P +SAEK+EQLSVLEEK+KNLLEQVE LGE GKVDEAEALMRKVE LN EKT L Q+   
Sbjct: 121 PSLSAEKAEQLSVLEEKVKNLLEQVEALGEEGKVDEAEALMRKVEGLNTEKTVLLQRP-T 179

Query: 181 DKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKEKA 240
           DKVL MAQEKKMALCE+CGSFLVANDA ERTQSH++GKQH+GYG+VRDFI E K AK+K 
Sbjct: 180 DKVLAMAQEKKMALCEVCGSFLVANDAVERTQSHVTGKQHVGYGLVRDFIAEQKAAKDKG 239

Query: 241 REEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRERDRERSREW 300
           +EEERL + KE +D+RK REKE ES KRSGSSDR+ YRDRDRDR+ +R+R+R R+  +  
Sbjct: 240 KEEERLVRGKEADDKRKPREKESES-KRSGSSDRESYRDRDRDRDGDRHRDRGRDHRKPH 298

Query: 301 DGRSGRDGGRGADWRSRDRHRDRSRSRSP-VRHGHRRSPRSPVRQY 345
           D RS          RS    RDRSRSRSP  R GHRR  RSP+RQY
Sbjct: 299 DRRS----------RSGREGRDRSRSRSPHGRSGHRRVSRSPIRQY 334

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466119|ref|XP_002267755.1| PREDICTED: luc7-like protein 3-like [Vitis vinifera]

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 298/358 (83%), Positives = 316/358 (88%), Gaps = 13/358 (3%)

Query: 1   MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPC 60
           MDAQRALLDELMGAARNLTEEEKK YKE+ WDDKEVC FYMVRFCPHDLFVNTRSDLGPC
Sbjct: 1   MDAQRALLDELMGAARNLTEEEKKGYKEVTWDDKEVCGFYMVRFCPHDLFVNTRSDLGPC 60

Query: 61  PRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPP 120
           PRIHDQKLKESFEKSPRHD+YVP+FEAEL+QFCEKLVMDLDRRVRRGRERL+QEVE APP
Sbjct: 61  PRIHDQKLKESFEKSPRHDSYVPRFEAELSQFCEKLVMDLDRRVRRGRERLAQEVEAAPP 120

Query: 121 PPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQN 180
            P+S EKSEQLSVLEEKIKNLLEQVE LGEAGKVDEAEALMRKVE+LN EKT LTQQ QN
Sbjct: 121 APLSLEKSEQLSVLEEKIKNLLEQVEALGEAGKVDEAEALMRKVEMLNAEKTVLTQQPQN 180

Query: 181 DKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKEKA 240
           DKVLM+AQEKKMALCE CGSFLVANDAAERTQSH++GKQHIGYGMVRDFITEYKEAKEKA
Sbjct: 181 DKVLMLAQEKKMALCETCGSFLVANDAAERTQSHVTGKQHIGYGMVRDFITEYKEAKEKA 240

Query: 241 REEERLAKEKEVEDRRKQREKEYESRKR---SGSSDRDRYRDRDRDRERERYRERDRERS 297
           REEERL +EKE E+RRKQREKE ESR R   SG  DR R RDRDR+R+R R RERDRER 
Sbjct: 241 REEERLKREKEAEERRKQREKESESRSRRADSGDRDRTRDRDRDRERDRYRERERDRERP 300

Query: 298 REWDGRSGRDGGRGADWRSRD----------RHRDRSRSRSPVRHGHRRSPRSPVRQY 345
           REW+GR  RDGGRG DWR  +          R+RDRSRSRSPVRH HRRSP+SPVR Y
Sbjct: 301 REWNGRGYRDGGRGTDWRYSNSRDGRDGGRDRYRDRSRSRSPVRHSHRRSPQSPVRPY 358

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084210|emb|CBI24598.3| unnamed protein product [Vitis vinifera]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 292/348 (83%), Positives = 309/348 (88%), Gaps = 15/348 (4%)

Query: 1   MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPC 60
           MDAQRALLDELMGAARNLTEEEKK YKE+ WDDKEVC FYMVRFCPHDLFVNTRSDLGPC
Sbjct: 1   MDAQRALLDELMGAARNLTEEEKKGYKEVTWDDKEVCGFYMVRFCPHDLFVNTRSDLGPC 60

Query: 61  PRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPP 120
           PRIHDQKLKESFEKSPRHD+YVP+FEAEL+QFCEKLVMDLDRRVRRGRERL+QEVE APP
Sbjct: 61  PRIHDQKLKESFEKSPRHDSYVPRFEAELSQFCEKLVMDLDRRVRRGRERLAQEVEAAPP 120

Query: 121 PPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQN 180
            P+S EKSEQLSVLEEKIKNLLEQVE LGEAGKVDEAEALMRKVE+LN EKT LTQQ QN
Sbjct: 121 APLSLEKSEQLSVLEEKIKNLLEQVEALGEAGKVDEAEALMRKVEMLNAEKTVLTQQPQN 180

Query: 181 DKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKEKA 240
           DKVLM+AQEKKMALCE CGSFLVANDAAERTQSH++GKQHIGYGMVRDFITEYKEAKEKA
Sbjct: 181 DKVLMLAQEKKMALCETCGSFLVANDAAERTQSHVTGKQHIGYGMVRDFITEYKEAKEKA 240

Query: 241 REEERLAKEKEVEDRRKQREKEYESRKR---SGSSDRDRYRDRDRDRERERYRERDRERS 297
           REEERL +EKE E+RRKQREKE ESR R   SG  DR R RDRDR+R+R R RERDRER 
Sbjct: 241 REEERLKREKEAEERRKQREKESESRSRRADSGDRDRTRDRDRDRERDRYRERERDRERP 300

Query: 298 REWDGRSGRDGGRGADWRSRDRHRDRSRSRSPVRHGHRRSPRSPVRQY 345
           REW+     DGG       RDR+RDRSRSRSPVRH HRRSP+SPVR Y
Sbjct: 301 REWN-----DGG-------RDRYRDRSRSRSPVRHSHRRSPQSPVRPY 336

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451769|ref|XP_004143633.1| PREDICTED: luc7-like protein 3-like [Cucumis sativus]

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 263/321 (81%), Positives = 288/321 (89%), Gaps = 14/321 (4%)

Query: 1   MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPC 60
           MDAQRALLDELMG+ARNLTEEE++ YKE+ WDDKEVC FYMVRFCPHDLFVNTRSDLGPC
Sbjct: 1   MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLGPC 60

Query: 61  PRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPP 120
            RIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERL+QEVEPAPP
Sbjct: 61  TRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLAQEVEPAPP 120

Query: 121 PPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQN 180
            P+SAEKSEQLSVLEEKIKNLLEQVE LGEAGKVDEAEALMRKV++LN EKT LTQQ+QN
Sbjct: 121 TPLSAEKSEQLSVLEEKIKNLLEQVEALGEAGKVDEAEALMRKVDLLNTEKTALTQQTQN 180

Query: 181 DKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKEKA 240
           DKVLM+AQEKKMALCEICGSFLVANDAAER QSH++GKQH+GYGMVRDFI+E+KEAKEKA
Sbjct: 181 DKVLMLAQEKKMALCEICGSFLVANDAAERVQSHVTGKQHVGYGMVRDFISEHKEAKEKA 240

Query: 241 REEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRERDRE----- 295
           REEERLA+EKE E+R+KQRE E+E RKR G S  D+YRDR+RDR+R RYRERDR+     
Sbjct: 241 REEERLAREKEAEERKKQRE-EFERRKR-GDSSEDKYRDRERDRDRNRYRERDRDRERSR 298

Query: 296 -------RSREWDGRSGRDGG 309
                  R  +W  R+GRDGG
Sbjct: 299 RGGRDEIRGMDWRSRNGRDGG 319

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15242081|ref|NP_199954.1| LUC7 N_terminus domain-containing protein [Arabidopsis thaliana] gi|30696048|ref|NP_851170.1| LUC7 N_terminus domain-containing protein [Arabidopsis thaliana] gi|334188317|ref|NP_001190514.1| LUC7 N_terminus domain-containing protein [Arabidopsis thaliana] gi|1699023|gb|AAB68037.1| putative arginine-aspartate-rich RNA binding protein [Arabidopsis thaliana] gi|1699051|gb|AAB68040.1| putative aspartate-arginine-rich mRNA binding protein [Arabidopsis thaliana] gi|9759287|dbj|BAB09752.1| arginine-aspartate-rich RNA binding protein-like [Arabidopsis thaliana] gi|18377714|gb|AAL67007.1| putative arginine-aspartate-rich RNA binding protein [Arabidopsis thaliana] gi|22136854|gb|AAM91771.1| putative arginine-aspartate-rich RNA binding protein [Arabidopsis thaliana] gi|332008693|gb|AED96076.1| LUC7 N_terminus domain-containing protein [Arabidopsis thaliana] gi|332008694|gb|AED96077.1| LUC7 N_terminus domain-containing protein [Arabidopsis thaliana] gi|332008695|gb|AED96078.1| LUC7 N_terminus domain-containing protein [Arabidopsis thaliana]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 250/345 (72%), Positives = 284/345 (82%), Gaps = 11/345 (3%)

Query: 1   MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPC 60
           MDAQRALLDELMGAARNLT+EE++ +KE+KWDD+EVC FYMVRFCPHDLFVNT+SDLG C
Sbjct: 1   MDAQRALLDELMGAARNLTDEERRGFKEVKWDDREVCAFYMVRFCPHDLFVNTKSDLGAC 60

Query: 61  PRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPP 120
            RIHD KLKESFE SPRHD+YVPKFEAELAQFCEKLV DLDR+VRRGRERL+QEVEP PP
Sbjct: 61  SRIHDPKLKESFENSPRHDSYVPKFEAELAQFCEKLVNDLDRKVRRGRERLAQEVEPVPP 120

Query: 121 PPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQN 180
           P +SAEK+EQLSVLEEK+KNLLEQVE LGE GKVDEAEALMRKVE LN EKT L Q+   
Sbjct: 121 PSLSAEKAEQLSVLEEKVKNLLEQVEALGEEGKVDEAEALMRKVEGLNAEKTVLLQRP-T 179

Query: 181 DKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKEKA 240
           DKVL MAQEKKMALCE+CGSFLVANDA ERTQSH++GKQH+GYG+VRDFI E K AK+K 
Sbjct: 180 DKVLAMAQEKKMALCEVCGSFLVANDAVERTQSHVTGKQHVGYGLVRDFIAEQKAAKDKG 239

Query: 241 REEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRERDRERSREW 300
           +EEERL + KE +D+RK REKE ES KRSGSSDR+RYRDRDR+R+ +R+R+R R+  + +
Sbjct: 240 KEEERLVRGKEADDKRKPREKESES-KRSGSSDRERYRDRDRNRDGDRHRDRGRDYRKPY 298

Query: 301 DGRSGRDGGRGADWRSRDRHRDRSRSRSPVRHGHRRSPRSPVRQY 345
           D RS R G    D         RS        GHRR  RSP+RQY
Sbjct: 299 DRRS-RSGREDRDRSRSRSPHGRS--------GHRRVSRSPIRQY 334

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449506483|ref|XP_004162762.1| PREDICTED: LOW QUALITY PROTEIN: luc7-like protein 3-like [Cucumis sativus]

 Score =  452 bits (1164), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 262/321 (81%), Positives = 287/321 (89%), Gaps = 14/321 (4%)

Query: 1   MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPC 60
           MDAQRALLDELMG+ARNLTEEE++ YKE+ WDDKEVC FYMVRFCPHDLFVNTRSDLGPC
Sbjct: 1   MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLGPC 60

Query: 61  PRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPP 120
            RIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERL+QEVEPAPP
Sbjct: 61  TRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLAQEVEPAPP 120

Query: 121 PPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQN 180
            P+SAEKSEQLSVLEEKIKNLLEQVE LGEAGKVDEAEALMRKV++LN EKT LTQQ+QN
Sbjct: 121 TPLSAEKSEQLSVLEEKIKNLLEQVEALGEAGKVDEAEALMRKVDLLNTEKTALTQQTQN 180

Query: 181 DKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKEKA 240
           DKVLM+AQE KMALCEICGSFLVANDAAER QSH++GKQH+GYGMVRDFI+E+KEAKEKA
Sbjct: 181 DKVLMLAQEXKMALCEICGSFLVANDAAERVQSHVTGKQHVGYGMVRDFISEHKEAKEKA 240

Query: 241 REEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRERDRE----- 295
           REEERLA+EKE E+R+KQRE E+E RKR G S  D+YRDR+RDR+R RYRERDR+     
Sbjct: 241 REEERLAREKEAEERKKQRE-EFERRKR-GDSSEDKYRDRERDRDRNRYRERDRDRERSR 298

Query: 296 -------RSREWDGRSGRDGG 309
                  R  +W  R+GRDGG
Sbjct: 299 RGGRDEIRGMDWRSRNGRDGG 319

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147783651|emb|CAN72521.1| hypothetical protein VITISV_039964 [Vitis vinifera]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 243/272 (89%), Positives = 254/272 (93%)

Query: 1   MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPC 60
           MDAQRALLDELMGAARNLTEEEKK YKE+ WDDKEVC FYMVRFCPHDLFVNTRSDLGPC
Sbjct: 1   MDAQRALLDELMGAARNLTEEEKKGYKEVTWDDKEVCGFYMVRFCPHDLFVNTRSDLGPC 60

Query: 61  PRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPP 120
           PRIHDQKLKESFEKSPRHD+YVP+FEAELAQFCEKLVMDLDRRVRRGRERL+QEVE APP
Sbjct: 61  PRIHDQKLKESFEKSPRHDSYVPRFEAELAQFCEKLVMDLDRRVRRGRERLAQEVEAAPP 120

Query: 121 PPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQN 180
            P+S EKSEQLSVLEEKIKNLLEQVE LGEAGKVDEAEALMRKVE+LN EKT LTQQ QN
Sbjct: 121 APLSLEKSEQLSVLEEKIKNLLEQVEALGEAGKVDEAEALMRKVEMLNAEKTVLTQQPQN 180

Query: 181 DKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKEKA 240
           DKVLM+AQEKKMALCE CGSFLVANDAAERTQSH++GKQHIGYGMVRDFITEYKEAKEKA
Sbjct: 181 DKVLMLAQEKKMALCETCGSFLVANDAAERTQSHVTGKQHIGYGMVRDFITEYKEAKEKA 240

Query: 241 REEERLAKEKEVEDRRKQREKEYESRKRSGSS 272
           REEERL +EKE E+RRKQREKE ESR R   S
Sbjct: 241 REEERLKREKEAEERRKQREKESESRSRRADS 272

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	345
TAIR|locus:2163640	334	AT5G51410 "AT5G51410" [Arabido	0.756	0.781	0.690	3.4e-94
FB|FBgn0029887	438	CG3198 [Drosophila melanogaste	0.501	0.394	0.396	4e-39
UNIPROTKB|E1C6U8	434	LUC7L3 "Uncharacterized protei	0.626	0.497	0.372	2.1e-36
UNIPROTKB|Q3SX41	432	LUC7L3 "Luc7-like protein 3" [	0.626	0.5	0.372	2.1e-36
UNIPROTKB|O95232	432	LUC7L3 "Luc7-like protein 3" [	0.626	0.5	0.372	2.1e-36
UNIPROTKB|F1RTB6	432	LUC7L3 "Uncharacterized protei	0.626	0.5	0.372	2.1e-36
UNIPROTKB|Q5R8W6	432	LUC7L3 "Luc7-like protein 3" [	0.626	0.5	0.372	2.1e-36
MGI|MGI:1914934	432	Luc7l3 "LUC7-like 3 (S. cerevi	0.626	0.5	0.372	2.1e-36
RGD|1307981	477	Luc7l3 "LUC7-like 3 (S. cerevi	0.626	0.452	0.372	2.1e-36
ZFIN|ZDB-GENE-040625-111	364	luc7l "LUC7-like (S. cerevisia	0.634	0.601	0.310	5.7e-27

TAIR|locus:2163640 AT5G51410 "AT5G51410" [Arabidopsis thaliana (taxid:3702)]

 Score = 896 (320.5 bits), Expect = 3.4e-94, Sum P(2) = 3.4e-94
 Identities = 181/262 (69%), Positives = 194/262 (74%)

Query:     1 MDAQRALLDELMGAARNLTXXXXXXXXXXXXXXXXVCPFYMVRFCPHDLFVNTRSDLGPC 60
             MDAQRALLDELMGAARNLT                VC FYMVRFCPHDLFVNT+SDLG C
Sbjct:     1 MDAQRALLDELMGAARNLTDEERRGFKEVKWDDREVCAFYMVRFCPHDLFVNTKSDLGAC 60

Query:    61 PRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDXXXXXXXXXLSQEVEPAPP 120
              RIHD KLKESFE SPRHD+YVPKFEAELAQFCEKLV DLD         L+QEVEP PP
Sbjct:    61 SRIHDPKLKESFENSPRHDSYVPKFEAELAQFCEKLVNDLDRKVRRGRERLAQEVEPVPP 120

Query:   121 PPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQN 180
             P +SAEK+EQLSVLEEK+KNLLEQVE LGE GKVDEAEALMRKVE LN EKT L Q+   
Sbjct:   121 PSLSAEKAEQLSVLEEKVKNLLEQVEALGEEGKVDEAEALMRKVEGLNAEKTVLLQRP-T 179

Query:   181 DKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITXXXXXXXXX 240
             DKVL MAQEKKMALCE+CGSFLVANDA ERTQSH++GKQH+GYG+VRDFI          
Sbjct:   180 DKVLAMAQEKKMALCEVCGSFLVANDAVERTQSHVTGKQHVGYGLVRDFIAEQKAAKDKG 239

Query:   241 XXXXXXXXXXXXXDRRKQREKE 262
                          D+RK REKE
Sbjct:   240 KEEERLVRGKEADDKRKPREKE 261

GO:0003723 "RNA binding" evidence=TAS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

FB|FBgn0029887 CG3198 [Drosophila melanogaster (taxid:7227)]

 Score = 299 (110.3 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
 Identities = 71/179 (39%), Positives = 95/179 (53%)

Query:     1 MDAQRALLDELMGAARNLTXXXXXXXXXXXXXXXXVCPFYMVRFCPHDLFVNTRSDLGPC 60
             +DA R +LDELMG  RNL                  C FY V+FCPHDLF+NTR+DLGPC
Sbjct:     2 VDAARQMLDELMGRNRNL--HPSEAGAKVNWEDPEFCQFYNVKFCPHDLFINTRADLGPC 59

Query:    61 PRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDXXXXXXXXXL--SQEVEPA 118
              RIHD++ +  +E + R      ++E E  +FC  ++ D+D         L   Q  +P 
Sbjct:    60 ARIHDEEARHLYEDA-RPSQRKRQYEDEFLRFCNVMLHDVDRKIQKGKQRLLLMQRDQPN 118

Query:   119 PPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQ 177
              P P+S  + EQL+ L  +I  LL + E  G  G VD+A+ LM   E L  EK  L QQ
Sbjct:   119 VPAPLSRHQ-EQLANLTARINKLLSEAEEAGIRGDVDQAQDLMTVCEELKEEKEQLVQQ 176

GO:0005685 "U1 snRNP" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS

UNIPROTKB|E1C6U8 LUC7L3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 83/223 (37%), Positives = 125/223 (56%)

Query:     7 LLDELMGAARNLTXXXXXXXXXXXXXXXXVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQ 66
             LLDELMG  RNL                 VC +Y+  FCP +LF NTRSDLGPC +IHD+
Sbjct:     7 LLDELMGRDRNLAPDEKRSNVRWDHES--VCKYYLCGFCPAELFTNTRSDLGPCEKIHDE 64

Query:    67 KLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDXXXXXXXX--XLSQEVEPAPPPPIS 124
              L++ +EKS R       +E +  ++ + L+ +++           LSQ  + +     +
Sbjct:    65 NLRKQYEKSSRFMKV--GYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPT 122

Query:   125 AEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVL 184
              +  E++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE L  E+  L   +   +  
Sbjct:   123 GKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIESF 182

Query:   185 MMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVR 227
               AQEK+M +CE+CG+FL+  DA  R   H+ GKQH+GY  ++
Sbjct:   183 A-AQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIK 224

GO:0003729 "mRNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

UNIPROTKB|Q3SX41 LUC7L3 "Luc7-like protein 3" [Bos taurus (taxid:9913)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 83/223 (37%), Positives = 125/223 (56%)

Query:     7 LLDELMGAARNLTXXXXXXXXXXXXXXXXVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQ 66
             LLDELMG  RNL                 VC +Y+  FCP +LF NTRSDLGPC +IHD+
Sbjct:     7 LLDELMGRDRNLAPDEKRSNVRWDHES--VCKYYLCGFCPAELFTNTRSDLGPCEKIHDE 64

Query:    67 KLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDXXXXXXXX--XLSQEVEPAPPPPIS 124
              L++ +EKS R       +E +  ++ + L+ +++           LSQ  + +     +
Sbjct:    65 NLRKQYEKSSRFMKV--GYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPT 122

Query:   125 AEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVL 184
              +  E++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE L  E+  L   +   +  
Sbjct:   123 GKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIESF 182

Query:   185 MMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVR 227
               AQEK+M +CE+CG+FL+  DA  R   H+ GKQH+GY  ++
Sbjct:   183 A-AQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIK 224

GO:0008380 "RNA splicing" evidence=ISS

GO:0006950 "response to stress" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0003729 "mRNA binding" evidence=ISS

GO:0006915 "apoptotic process" evidence=ISS

GO:0016607 "nuclear speck" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|O95232 LUC7L3 "Luc7-like protein 3" [Homo sapiens (taxid:9606)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 83/223 (37%), Positives = 125/223 (56%)

Query:     7 LLDELMGAARNLTXXXXXXXXXXXXXXXXVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQ 66
             LLDELMG  RNL                 VC +Y+  FCP +LF NTRSDLGPC +IHD+
Sbjct:     7 LLDELMGRDRNLAPDEKRSNVRWDHES--VCKYYLCGFCPAELFTNTRSDLGPCEKIHDE 64

Query:    67 KLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDXXXXXXXX--XLSQEVEPAPPPPIS 124
              L++ +EKS R       +E +  ++ + L+ +++           LSQ  + +     +
Sbjct:    65 NLRKQYEKSSRFMKV--GYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPT 122

Query:   125 AEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVL 184
              +  E++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE L  E+  L   +   +  
Sbjct:   123 GKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIESF 182

Query:   185 MMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVR 227
               AQEK+M +CE+CG+FL+  DA  R   H+ GKQH+GY  ++
Sbjct:   183 A-AQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIK 224

GO:0003677 "DNA binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0006915 "apoptotic process" evidence=IMP

GO:0006950 "response to stress" evidence=IMP

GO:0008380 "RNA splicing" evidence=IMP

GO:0003729 "mRNA binding" evidence=IMP

GO:0005730 "nucleolus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005925 "focal adhesion" evidence=IDA

UNIPROTKB|F1RTB6 LUC7L3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 83/223 (37%), Positives = 125/223 (56%)

Query:     7 LLDELMGAARNLTXXXXXXXXXXXXXXXXVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQ 66
             LLDELMG  RNL                 VC +Y+  FCP +LF NTRSDLGPC +IHD+
Sbjct:     7 LLDELMGRDRNLAPDEKRSNVRWDHES--VCKYYLCGFCPAELFTNTRSDLGPCEKIHDE 64

Query:    67 KLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDXXXXXXXX--XLSQEVEPAPPPPIS 124
              L++ +EKS R       +E +  ++ + L+ +++           LSQ  + +     +
Sbjct:    65 NLRKQYEKSSRFMKV--GYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPT 122

Query:   125 AEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVL 184
              +  E++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE L  E+  L   +   +  
Sbjct:   123 GKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIESF 182

Query:   185 MMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVR 227
               AQEK+M +CE+CG+FL+  DA  R   H+ GKQH+GY  ++
Sbjct:   183 A-AQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIK 224

GO:0008380 "RNA splicing" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

UNIPROTKB|Q5R8W6 LUC7L3 "Luc7-like protein 3" [Pongo abelii (taxid:9601)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 83/223 (37%), Positives = 125/223 (56%)

Query:     7 LLDELMGAARNLTXXXXXXXXXXXXXXXXVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQ 66
             LLDELMG  RNL                 VC +Y+  FCP +LF NTRSDLGPC +IHD+
Sbjct:     7 LLDELMGRDRNLAPDEKRSNVRWDHES--VCKYYLCGFCPAELFTNTRSDLGPCEKIHDE 64

Query:    67 KLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDXXXXXXXX--XLSQEVEPAPPPPIS 124
              L++ +EKS R       +E +  ++ + L+ +++           LSQ  + +     +
Sbjct:    65 NLRKQYEKSSRFMKV--GYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPT 122

Query:   125 AEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVL 184
              +  E++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE L  E+  L   +   +  
Sbjct:   123 GKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIESF 182

Query:   185 MMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVR 227
               AQEK+M +CE+CG+FL+  DA  R   H+ GKQH+GY  ++
Sbjct:   183 A-AQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIK 224

GO:0003729 "mRNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006915 "apoptotic process" evidence=ISS

GO:0006950 "response to stress" evidence=ISS

GO:0008380 "RNA splicing" evidence=ISS

MGI|MGI:1914934 Luc7l3 "LUC7-like 3 (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 83/223 (37%), Positives = 125/223 (56%)

Query:     7 LLDELMGAARNLTXXXXXXXXXXXXXXXXVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQ 66
             LLDELMG  RNL                 VC +Y+  FCP +LF NTRSDLGPC +IHD+
Sbjct:     7 LLDELMGRDRNLAPDEKRSNVRWDHES--VCKYYLCGFCPAELFTNTRSDLGPCEKIHDE 64

Query:    67 KLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDXXXXXXXX--XLSQEVEPAPPPPIS 124
              L++ +EKS R       +E +  ++ + L+ +++           LSQ  + +     +
Sbjct:    65 NLRKQYEKSSRFMKV--GYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPT 122

Query:   125 AEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVL 184
              +  E++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE L  E+  L   +   +  
Sbjct:   123 GKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIESF 182

Query:   185 MMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVR 227
               AQEK+M +CE+CG+FL+  DA  R   H+ GKQH+GY  ++
Sbjct:   183 A-AQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIK 224

GO:0003677 "DNA binding" evidence=IEA

GO:0003729 "mRNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0006915 "apoptotic process" evidence=ISO

GO:0006950 "response to stress" evidence=ISO

GO:0008380 "RNA splicing" evidence=ISO

RGD|1307981 Luc7l3 "LUC7-like 3 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 83/223 (37%), Positives = 125/223 (56%)

Query:     7 LLDELMGAARNLTXXXXXXXXXXXXXXXXVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQ 66
             LLDELMG  RNL                 VC +Y+  FCP +LF NTRSDLGPC +IHD+
Sbjct:     7 LLDELMGRDRNLAPDEKRSNVRWDHES--VCKYYLCGFCPAELFTNTRSDLGPCEKIHDE 64

Query:    67 KLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDXXXXXXXX--XLSQEVEPAPPPPIS 124
              L++ +EKS R       +E +  ++ + L+ +++           LSQ  + +     +
Sbjct:    65 NLRKQYEKSSRFMKV--GYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPT 122

Query:   125 AEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVL 184
              +  E++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE L  E+  L   +   +  
Sbjct:   123 GKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIESF 182

Query:   185 MMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVR 227
               AQEK+M +CE+CG+FL+  DA  R   H+ GKQH+GY  ++
Sbjct:   183 A-AQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIK 224

GO:0003729 "mRNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0005925 "focal adhesion" evidence=ISO

GO:0006915 "apoptotic process" evidence=ISO

GO:0006950 "response to stress" evidence=ISO

GO:0008380 "RNA splicing" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

ZFIN|ZDB-GENE-040625-111 luc7l "LUC7-like (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 72/232 (31%), Positives = 114/232 (49%)

Query:     1 MDAQ---RALLDELMGAARNLTXXXXXXXXXXXXXXXXVCPFYMVRFCPHDLFVNTRSDL 57
             M AQ   RALLD+LMG +R+                  VC  +++  CPHD+   TR DL
Sbjct:     1 MSAQAQMRALLDQLMGTSRD----GDESRQRVKFTDERVCKSHLLNCCPHDILSGTRMDL 56

Query:    58 GPCPRIHDQKLKESFE-KSPRHDAYVPKFEAELAQFCEKLVMDLDXXXXXXXXXLSQEVE 116
             G C +IHD  L+  +E  S   D +   FE +     E  + D D         L++  E
Sbjct:    57 GECSKIHDLALRADYEIASKERDLF---FELDAVDHLESFIADCDRRTELAKKRLAETQE 113

Query:   117 PAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQ 176
                     A+K+E++  L E+I  LL + E LG  G VDEA+ ++++VE +   K    +
Sbjct:   114 EISAEV--AQKAEKVYELNEEIGKLLAKAEQLGAEGNVDEAQEVLQEVEKVRSRKKDAEE 171

Query:   177 QSQNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRD 228
             + +N       Q++K+ +CE+C ++L  +D   R   H  GK H+G+  +R+
Sbjct:   172 EYRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIRE 223

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.8__1028__AT5G51410.2 annotation not avaliable (334 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	345
pfam03194	252	pfam03194, LUC7, LUC7 N_terminus	5e-81
COG5200	258	COG5200, LUC7, U1 snRNP component, mediates U1 snR	3e-24
TIGR01642	509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	3e-11
TIGR01642	509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	2e-09
PRK12678	672	PRK12678, PRK12678, transcription termination fact	2e-07
PRK12678	672	PRK12678, PRK12678, transcription termination fact	3e-07
TIGR01622	457	TIGR01622, SF-CC1, splicing factor, CC1-like famil	1e-06
PRK12678	672	PRK12678, PRK12678, transcription termination fact	2e-06
PRK12678	672	PRK12678, PRK12678, transcription termination fact	3e-06
PRK12678	672	PRK12678, PRK12678, transcription termination fact	4e-06
PRK12678	672	PRK12678, PRK12678, transcription termination fact	5e-06
TIGR01642	509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	6e-06
PRK12678	672	PRK12678, PRK12678, transcription termination fact	1e-05
PRK12678	672	PRK12678, PRK12678, transcription termination fact	1e-05
PRK12678	672	PRK12678, PRK12678, transcription termination fact	2e-05
PRK12678	672	PRK12678, PRK12678, transcription termination fact	2e-05
PRK12678	672	PRK12678, PRK12678, transcription termination fact	2e-04
TIGR01622	457	TIGR01622, SF-CC1, splicing factor, CC1-like famil	2e-04
TIGR01622	457	TIGR01622, SF-CC1, splicing factor, CC1-like famil	5e-04
TIGR01642	509	TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la	7e-04
pfam08648	158	pfam08648, DUF1777, Protein of unknown function (D	8e-04
pfam03154	979	pfam03154, Atrophin-1, Atrophin-1 family	0.003

>gnl|CDD|217417 pfam03194, LUC7, LUC7 N_terminus

 Score =  246 bits (630), Expect = 5e-81
 Identities = 104/252 (41%), Positives = 150/252 (59%), Gaps = 10/252 (3%)

Query: 1   MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPC 60
            DAQR +LD+LMG+ RN  E  +     +K+DD+EVC  Y+V FCPHDLF NT+ DLGPC
Sbjct: 1   ADAQRKMLDQLMGSNRNGDESRQS----VKFDDREVCRSYLVGFCPHDLFQNTKMDLGPC 56

Query: 61  PRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPP 120
           P++HD KLK  +E++ +   Y P +E E  +  E+ V D DR++ + ++RL    E    
Sbjct: 57  PKVHDLKLKADYERASKSQDYFP-YEVEALEILERFVHDCDRKIDKAKQRLELTQEEQTK 115

Query: 121 PPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQ- 179
               ++  E+L+ L+E+I  LL + E LGE GKVDEA  LM++VE L  +K  L    + 
Sbjct: 116 IAADSKA-EELAELDEEIGKLLAEAEALGEEGKVDEAMKLMKEVEELKAKKKELEDSDEV 174

Query: 180 --NDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAK 237
                    AQ++K+ +CE+CG++L   D   R   H  GK H+GY  VR+ + E KEAK
Sbjct: 175 RNAAPSSAQAQQQKLRVCEVCGAYLSRLDNDRRLADHFGGKLHLGYVKVREKLAELKEAK 234

Query: 238 EKAREEERLAKE 249
            K R +ER  + 
Sbjct: 235 AK-RRKEREERG 245

This family contains the N terminal region of several LUC7 protein homologues and only contains eukaryotic proteins. LUC7 has been shown to be a U1 snRNA associated protein with a role in splice site recognition. The family also contains human and mouse LUC7 like (LUC7L) proteins and human cisplatin resistance-associated overexpressed protein (CROP). Length = 252

>gnl|CDD|227527 COG5200, LUC7, U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]

 Score = 99.3 bits (247), Expect = 3e-24
 Identities = 65/244 (26%), Positives = 114/244 (46%), Gaps = 10/244 (4%)

Query: 2   DAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPCP 61
             QR +L++LMG     +  +        + DK+VC   +V FCP DLF NT+  LG CP
Sbjct: 3   AEQRKVLEQLMG--PERSTFDPCRP--THFTDKKVCISMLVGFCPFDLFRNTKRSLGKCP 58

Query: 62  RIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPP 121
             H++K K  +E++ R  A   ++E E  +   ++V+  +  +R           P    
Sbjct: 59  TSHEEKYKAEYERNGRERAE--EYEWEYLRLLVRIVLSCNDGIRAAGLED--RTTPEEFG 114

Query: 122 PISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQN- 180
            I  EK E  + ++E I  L  + + L +   V+ A +   ++E L  E+  + +   + 
Sbjct: 115 KIK-EKEELFNRVDESIGELGMEGDALAKRKLVERACSAFNELERLREERKEIKEAVYSM 173

Query: 181 DKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKEKA 240
            +       +K+ +C ICG++L   D   R   H +GK H+GY +VR  + +  +    +
Sbjct: 174 VENNGQGTHQKLQVCGICGAYLSRLDTDRRLADHFNGKLHLGYLLVRSDLADLLKKFGIS 233

Query: 241 REEE 244
           R  E
Sbjct: 234 RVAE 237

Length = 258

>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor

 Score = 64.1 bits (156), Expect = 3e-11
 Identities = 31/83 (37%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 262 EYESRKRSGSSDRDRYRDRDRDRERERYRERDRERSREWDGRSGRDGGRGADWRSRDRHR 321
           E   R+R  S  RDR R  +R R R R R R R+R R       R+     D R RDR R
Sbjct: 3   EEPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRR-----SRERSYREDSRPRDRRR 57

Query: 322 DRSRSRSPVRHGHRRSPRSPVRQ 344
             SRS   +R+   R  R   R+
Sbjct: 58  YDSRSPRSLRYSSVRRSRDRPRR 80

These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509

>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor

 Score = 58.0 bits (140), Expect = 2e-09
 Identities = 42/114 (36%), Positives = 50/114 (43%), Gaps = 15/114 (13%)

Query: 232 EYKEAKEKAREEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRE 291
           E    +EK+R  +R        DR  +R      R+RS    R R R R       R   
Sbjct: 4   EPDREREKSRGRDR--------DRSSER-----PRRRSRDRSRFRDRHRRSRERSYREDS 50

Query: 292 RDRERSREWDGRSGRDGGRGADWRSRDRHRDRSRS-RSPVRHGHRRSPRSPVRQ 344
           R R+R R  D RS R     +  RSRDR R RSRS RS  +H  R   RSP  Q
Sbjct: 51  RPRDRRRY-DSRSPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDRSPSNQ 103

These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 1/94 (1%)

Query: 238 EKAREEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRERDRERS 297
            +  E  R   +++  DRR+Q ++  E  +R G   R R R RDR   R      DR   
Sbjct: 191 GRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDR-GD 249

Query: 298 REWDGRSGRDGGRGADWRSRDRHRDRSRSRSPVR 331
           R+ D   GR G RG  +R RDR   R       R
Sbjct: 250 RDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNER 283

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 51.4 bits (124), Expect = 3e-07
 Identities = 30/106 (28%), Positives = 41/106 (38%), Gaps = 1/106 (0%)

Query: 235 EAKEKAREEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRERDR 294
           +A E+  EEER  + +  +   +Q E E   R R     RD   DRDR   RE+   R+ 
Sbjct: 159 DAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDG-DDRDRRDRREQGDRREE 217

Query: 295 ERSREWDGRSGRDGGRGADWRSRDRHRDRSRSRSPVRHGHRRSPRS 340
              R+   R GR   R       D +R+    R       R   R 
Sbjct: 218 RGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRG 263

Length = 672

>gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 30/81 (37%), Positives = 32/81 (39%), Gaps = 6/81 (7%)

Query: 266 RKRSGSSDRDRYRDRDRD--RERERYRERDRERSREWDGRSGRDGGRGADWRSRDRHRDR 323
           R R     R R   R  D  RER R R R R+RSR    R  RD  RG   RSR R    
Sbjct: 1   RYRDRERGRLRNDTRRSDKGRERSRRRSRSRDRSRR---RRDRDYYRGRRGRSRSR-SPN 56

Query: 324 SRSRSPVRHGHRRSPRSPVRQ 344
              R      +RR  R   R 
Sbjct: 57  RYYRPRGDRSYRRDDRRSGRN 77

This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed. Length = 457

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 1/100 (1%)

Query: 237 KEKAREEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRERDRER 296
             +AR +     E+E  D R++R    + +  +   +R R  +R RD +    R   RE+
Sbjct: 153 ATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRD-RRDRREQ 211

Query: 297 SREWDGRSGRDGGRGADWRSRDRHRDRSRSRSPVRHGHRR 336
               + R  RDGG     R R   RD     +    G R 
Sbjct: 212 GDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRD 251

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 25/103 (24%), Positives = 37/103 (35%)

Query: 235 EAKEKAREEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRERDR 294
             +         A++      +   E   ++ +R+   +RD  R R    +R+   ER  
Sbjct: 130 RRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGE 189

Query: 295 ERSREWDGRSGRDGGRGADWRSRDRHRDRSRSRSPVRHGHRRS 337
              RE  GR G D  R       DR  +R R     R G RR 
Sbjct: 190 RGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRR 232

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 48.4 bits (116), Expect = 4e-06
 Identities = 22/90 (24%), Positives = 34/90 (37%)

Query: 234 KEAKEKAREEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRERD 293
           +  +E+  E  R    ++ +   ++ E+     +     DRDR   R++   RE    RD
Sbjct: 163 RTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRD 222

Query: 294 RERSREWDGRSGRDGGRGADWRSRDRHRDR 323
               R    R  R   RG D R     RD 
Sbjct: 223 GGDRRGRRRRRDRRDARGDDNREDRGDRDG 252

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 48.0 bits (115), Expect = 5e-06
 Identities = 21/101 (20%), Positives = 33/101 (32%)

Query: 235 EAKEKAREEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRERDR 294
             +     E R   E       ++  +  E       +D     + +   ER R  +R+ 
Sbjct: 121 APEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERDERRRRGDRED 180

Query: 295 ERSREWDGRSGRDGGRGADWRSRDRHRDRSRSRSPVRHGHR 335
            ++    G  GR   RG D   RDR   R +       G R
Sbjct: 181 RQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRR 221

Length = 672

>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor

 Score = 47.6 bits (113), Expect = 6e-06
 Identities = 34/116 (29%), Positives = 43/116 (37%), Gaps = 13/116 (11%)

Query: 227 RDFITEYKEAKEKAREEERLAKEKEVEDRRKQREKE-YESRKRSGSSDRDRYRDRDRDRE 285
            D   E    +++ R  ER  +      R + R +   E   R  S  RDR R   R   
Sbjct: 5   PDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDSRSPR 64

Query: 286 RERY----RERDRERSREWDGRSGRDGGRGADWRSRDRHRDRSRSRSPVRHGHRRS 337
             RY    R RDR R R    RS          + R R RDRS S    +   +RS
Sbjct: 65  SLRYSSVRRSRDRPRRRSRSVRSIE--------QHRRRLRDRSPSNQWRKDDKKRS 112

These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 23/105 (21%), Positives = 32/105 (30%), Gaps = 2/105 (1%)

Query: 240 AREEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRERDRERSRE 299
           AR+     ++   E R    E+  E  +       DR  DR  + ER     R+      
Sbjct: 142 ARKAGEGGEQPATEARADAAERTEEEERDERRRRGDR-EDRQAEAERGERGRREERGRDG 200

Query: 300 WDGRSGRDGGRGADWRSRDRHRDRSRSRSPVRHGHRRSPRSPVRQ 344
            D        +G   R     RD    R   R   RR  R    +
Sbjct: 201 DDRDRRDRREQGDR-REERGRRDGGDRRGRRRRRDRRDARGDDNR 244

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 1/106 (0%)

Query: 235 EAKEKAREEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDR-ERERYRERD 293
             + +A   ER  +E+  E RR+   ++ ++    G   R   R RD D  +R   RE+ 
Sbjct: 153 ATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQG 212

Query: 294 RERSREWDGRSGRDGGRGADWRSRDRHRDRSRSRSPVRHGHRRSPR 339
             R        G   GR      RD   D +R     R G     R
Sbjct: 213 DRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGR 258

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 46.4 bits (111), Expect = 2e-05
 Identities = 20/103 (19%), Positives = 28/103 (27%)

Query: 234 KEAKEKAREEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRERD 293
             A          A +      R +  +   +RK     ++     R    ER    ERD
Sbjct: 111 AAAAAAEAASAPEAAQARERRERGEAARRGAARKAGEGGEQPATEARADAAERTEEEERD 170

Query: 294 RERSREWDGRSGRDGGRGADWRSRDRHRDRSRSRSPVRHGHRR 336
             R R        +  RG   R  +R RD        R     
Sbjct: 171 ERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGD 213

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 21/102 (20%), Positives = 32/102 (31%)

Query: 235 EAKEKAREEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRERDR 294
           E +   R      ++++ E  R +R +  E  +     DR   R++   RE    R+   
Sbjct: 166 EEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGD 225

Query: 295 ERSREWDGRSGRDGGRGADWRSRDRHRDRSRSRSPVRHGHRR 336
            R R          G        DR  D    R   R    R
Sbjct: 226 RRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFR 267

Length = 672

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 26/109 (23%), Positives = 36/109 (33%), Gaps = 3/109 (2%)

Query: 234 KEAKEKAREEERLAKEKEVEDRRKQREKEYESRKRSGSSDR--DRYRDRDRDRERERYRE 291
           ++A E   +    A+    E   ++   E   R          +R     R+       +
Sbjct: 143 RKAGEGGEQPATEARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDD 202

Query: 292 RDRERSREWDGRSGRDGGR-GADWRSRDRHRDRSRSRSPVRHGHRRSPR 339
           RDR   RE   R    G R G D R R R RDR  +R       R    
Sbjct: 203 RDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRD 251

Length = 672

>gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family

 Score = 43.0 bits (101), Expect = 2e-04
 Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 7/80 (8%)

Query: 255 RRKQREKEYESRKRSGSSDRDRYRDRDRDRERER-YRERDRERSREWDGRSGRDGGRGAD 313
           R + RE+    R  +  SD+ R R R R R R+R  R RDR+  R   GR GR   R  +
Sbjct: 1   RYRDRERG-RLRNDTRRSDKGRERSRRRSRSRDRSRRRRDRDYYR---GRRGRSRSRSPN 56

Query: 314 WRSRDRHRDRSR--SRSPVR 331
              R R     R   R   R
Sbjct: 57  RYYRPRGDRSYRRDDRRSGR 76

This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed. Length = 457

>gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 8/79 (10%)

Query: 234 KEAKEKAREEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERER----- 288
              +E+ R      +  +  +R ++R +  +  +R    DRD YR R   R R R     
Sbjct: 2   YRDRERGRLRNDTRRSDKGRERSRRRSRSRDRSRRR--RDRDYYRGRRG-RSRSRSPNRY 58

Query: 289 YRERDRERSREWDGRSGRD 307
           YR R     R  D RSGR+
Sbjct: 59  YRPRGDRSYRRDDRRSGRN 77

This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed. Length = 457

>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 286 RERYRERDRERSREWDGRSGRDGGRGADWRSRDRHRDRSRSRSPVRHGHRRSPRSPVR 343
           R+   +R+RE+SR  D     +       R R R RDRSR R   R    RS R   R
Sbjct: 1   RDEEPDREREKSRGRDRDRSSE-------RPRRRSRDRSRFRDRHRRSRERSYREDSR 51

These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Length = 509

>gnl|CDD|219953 pfam08648, DUF1777, Protein of unknown function (DUF1777)

 Score = 39.1 bits (91), Expect = 8e-04
 Identities = 36/76 (47%), Positives = 39/76 (51%), Gaps = 2/76 (2%)

Query: 265 SRKRSGSSDRDRYRDRDRDRER-ERYRERDRERSREWDGRSGRDGGRGADWRSRDRHRDR 323
            R RS S  R R R R R R+R ER RER R R R+   RS R        RSR   R R
Sbjct: 2   GRSRSRSPRRSRRRGRSRSRDRRERRRERSRSRERDRRRRS-RSRSPHRSRRSRSPRRHR 60

Query: 324 SRSRSPVRHGHRRSPR 339
           SRSRSP R   R+  R
Sbjct: 61  SRSRSPSRRRDRKRER 76

This is a family of eukaryotic proteins of unknown function. Some of the proteins in this family are putative nucleic acid binding proteins. Length = 158

>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family

 Score = 39.3 bits (91), Expect = 0.003
 Identities = 19/57 (33%), Positives = 30/57 (52%)

Query: 257 KQREKEYESRKRSGSSDRDRYRDRDRDRERERYRERDRERSREWDGRSGRDGGRGAD 313
           K+RE+  E  KR         R+R++++E+ER RER+RE  R     S     R ++
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAKASSSSHESRMSE 635

Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity. Length = 979

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	345
KOG0796	319	consensus Spliceosome subunit [RNA processing and	100.0
PF03194	254	LUC7: LUC7 N_terminus; InterPro: IPR004882 This fa	100.0
COG5200	258	LUC7 U1 snRNP component, mediates U1 snRNP associa	100.0
KOG0796	319	consensus Spliceosome subunit [RNA processing and	98.44
PF03194	254	LUC7: LUC7 N_terminus; InterPro: IPR004882 This fa	97.14
COG5200	258	LUC7 U1 snRNP component, mediates U1 snRNP associa	94.7
KOG2888	453	consensus Putative RNA binding protein [General fu	93.61
KOG4368	757	consensus Predicted RNA binding protein, contains	91.93
KOG4676	479	consensus Splicing factor, arginine/serine-rich [R	91.57
KOG4676	479	consensus Splicing factor, arginine/serine-rich [R	90.08
PHA02562	562	46 endonuclease subunit; Provisional	87.88
PRK01156	895	chromosome segregation protein; Provisional	87.45
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	86.93
PRK02224	880	chromosome segregation protein; Provisional	86.71
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	86.27
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	86.13
KOG0151	877	consensus Predicted splicing regulator, contains R	85.62
TIGR02302	851	aProt_lowcomp conserved hypothetical protein TIGR0	85.46
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	85.33
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	85.03
PF13779	820	DUF4175: Domain of unknown function (DUF4175)	82.4
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	82.23
PRK06835	329	DNA replication protein DnaC; Validated	80.38
KOG2888	453	consensus Putative RNA binding protein [General fu	80.31

>KOG0796 consensus Spliceosome subunit [RNA processing and modification]

Probab=100.00  E-value=3.2e-86  Score=630.78  Aligned_cols=231  Identities=43%  Similarity=0.789  Sum_probs=206.3

Q ss_pred             CHH-HHHHHHHhcCCCCCCChhhhhhccccCCCCCCCcchhhcCCChhHhhhhcccCCCCCCCCCcHHHHHHHhcCCCCC
Q 019171            1 MDA-QRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQKLKESFEKSPRHD   79 (345)
Q Consensus         1 md~-~RalLDeLMG~~Rn~~~~~~~~~~~~~~~D~~VCk~yL~g~CPhdLF~nTK~DlG~C~kiHd~~lK~~Ye~~~~~~   79 (345)
                      |++ ||+|||||||++||.....    ..+.|+||+||+||||||||||||+|||+|||+||+||+++||++|+.+++..
T Consensus         1 Msa~mR~mLdqLMGs~r~~~~~~----~~v~~~D~~VC~~fLvg~CPHDlF~nTk~dlg~C~kvHd~~lk~~Ye~~~k~~   76 (319)
T KOG0796|consen    1 MSAQMRAMLDQLMGSNRDGDETR----QRVKFDDPDVCKSFLVGFCPHDLFQNTKMDLGPCPKVHDEALKADYERASKER   76 (319)
T ss_pred             CchHHHHHHHHHhCCCcCCCccc----CCCCCCchhHHHHHHhCCCcHHHhhhhhcccCcccchhhHHHHHHHhhchHhh
Confidence            666 9999999999999865432    23799999999999999999999999999999999999999999999999999


Q ss_pred             CChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Q 019171           80 AYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEA  159 (345)
Q Consensus        80 ~~~~~yE~e~~~~L~~li~d~drkI~~~k~RL~~~~e~~~~~~~~~e~~e~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~  159 (345)
                      ++  +||++||.+|+.||.+|+++|+++++||+++.++.+  .....++++|..|+++|+.|+++||+||++|+|++||+
T Consensus        77 ~~--~~E~d~~~~l~~~v~d~~rri~~~kerL~e~~ee~~--~e~~~k~~~v~~l~e~I~~~l~~~E~LG~eG~Veeaq~  152 (319)
T KOG0796|consen   77 DY--GYEWDALEILERFVADVDRRIEKAKERLAETVEERS--EEAARKAEKVHELEEKIGKLLEKAEELGEEGNVEEAQK  152 (319)
T ss_pred             hh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence            99  999999999999999999999999999999865333  33344578999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-HHHHHHhhhhhhhh-hhHHHhhcCcccccchhhhcccchHHHhhhhhccccccchHHHHHHHHHHHHHH
Q 019171          160 LMRKVEILNV-EKTTLTQQSQNDKV-LMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAK  237 (345)
Q Consensus       160 l~~~ve~Lk~-ek~~le~~~~~~~~-~~~~~~qkm~VCeVCGA~Ls~~D~d~Rl~dH~~GK~HlGy~kIRe~l~eLk~~~  237 (345)
                      +|.+||.|++ +++..+.++ .+.+ .+++++|||+||+||||||+++||++||||||+|||||||++||++|++|++++
T Consensus       153 ~~~e~E~lk~~e~e~~~~~~-~~~~~~~~~~~qkl~VCeVCGa~L~~~D~d~RlaDHf~GKlHlGy~~iR~~l~eLk~~~  231 (319)
T KOG0796|consen  153 AMKEVEELKAKEKEEAEESY-NTTMPGASAQQQKLRVCEVCGAFLSVNDADRRLADHFGGKLHLGYVLIREKLAELKKEK  231 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-ccCcchhhhhhhhhhHHHhhhHHHhccchHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence            9999999997 555555444 3322 245689999999999999999999999999999999999999999999999987


Q ss_pred             HHh
Q 019171          238 EKA  240 (345)
Q Consensus       238 ~~~  240 (345)
                      .+.
T Consensus       232 ~~~  234 (319)
T KOG0796|consen  232 AKR  234 (319)
T ss_pred             hHH
Confidence            664

>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes

Probab=100.00  E-value=3.9e-85  Score=617.79  Aligned_cols=235  Identities=44%  Similarity=0.824  Sum_probs=212.0

Q ss_pred             CHHHHHHHHHhcCCCCCCChhhhhhccccCCCCCCCcchhhcCCChhHhhhhcccCCCCCCCCCcHHHHHHHhcCCCCCC
Q 019171            1 MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQKLKESFEKSPRHDA   80 (345)
Q Consensus         1 md~~RalLDeLMG~~Rn~~~~~~~~~~~~~~~D~~VCk~yL~g~CPhdLF~nTK~DlG~C~kiHd~~lK~~Ye~~~~~~~   80 (345)
                      ||+||||||||||++||+++..+.    ++|+||+|||||||||||||||+|||+||||||||||++||++|++++++++
T Consensus         1 md~~Ra~LdeLMG~~Rn~~~~~~~----~~f~D~~VCk~~L~g~CPhdLF~nTK~DLG~C~kiHd~~lk~~Ye~~~~~~~   76 (254)
T PF03194_consen    1 MDEMRAMLDELMGSNRNGDPSKRK----VHFTDPDVCKYFLVGFCPHDLFVNTKSDLGPCPKIHDEALKAEYEKASKKEK   76 (254)
T ss_pred             CHHHHHHHHHHcCCccCCCccccC----CCCCCcccCHHHHhCCCcHHHHhhcccccchhhhhcCHHHHHHHHhCccccc
Confidence            899999999999999998765532    7999999999999999999999999999999999999999999999999998


Q ss_pred             ChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Q 019171           81 YVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEAL  160 (345)
Q Consensus        81 ~~~~yE~e~~~~L~~li~d~drkI~~~k~RL~~~~e~~~~~~~~~e~~e~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l  160 (345)
                      ++ +||++|+.+|+.||.+||++|++|++||++++++.+. ......+++|..|+++|+.+|++||+||++|+|++||++
T Consensus        77 ~~-~YE~e~~~~L~~~i~d~drrI~~~k~RL~~~~~~~~~-~~~~~~~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~  154 (254)
T PF03194_consen   77 YG-GYEREFLRYLQRLIRDCDRRIERAKERLEQTQEEQAK-EADEEKAEKIDELDEKIGELLKEAEELGEEGDVDEAQKL  154 (254)
T ss_pred             cc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            85 6999999999999999999999999999999865542 223335889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhh--hh--hhhhHHHhhcCcccccchhhhcccchHHHhhhhhccccccchHHHHHHHHHHHHH
Q 019171          161 MRKVEILNVEKTTLTQQSQ--ND--KVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEA  236 (345)
Q Consensus       161 ~~~ve~Lk~ek~~le~~~~--~~--~~~~~~~~qkm~VCeVCGA~Ls~~D~d~Rl~dH~~GK~HlGy~kIRe~l~eLk~~  236 (345)
                      |.+|+.|+.++++|++...  .+  .++.++++|+|+||+|||||||++||++||+|||+|||||||++||++|++|++.
T Consensus       155 ~~~~e~Lk~ek~~le~~~~~~~~~~~~~~~~~~qkl~VCeVCGA~Ls~~D~d~RladH~~GK~HlGy~~IR~~l~el~e~  234 (254)
T PF03194_consen  155 MEEVEKLKEEKEELEKELEEYRNSIENSAQSQQQKLEVCEVCGAFLSVGDNDRRLADHFGGKQHLGYAKIREKLKELKEK  234 (254)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccccCccchhhhhhHHhccchHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence            9999999999999998320  22  2223457999999999999999999999999999999999999999999999998


Q ss_pred             HHHhH
Q 019171          237 KEKAR  241 (345)
Q Consensus       237 ~~~~~  241 (345)
                      +.+..
T Consensus       235 ~~~~~  239 (254)
T PF03194_consen  235 REERR  239 (254)
T ss_pred             HHHHH
Confidence            76633

LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].

>COG5200 LUC7 U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]

Probab=100.00  E-value=9.4e-63  Score=444.48  Aligned_cols=226  Identities=28%  Similarity=0.476  Sum_probs=194.9

Q ss_pred             HHHHHHHHHhcCCCCCCChhhhhhccccCCCCCCCcchhhcCCChhHhhhhcccCCCCCCCCCcHHHHHHHhcCCCCCCC
Q 019171            2 DAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQKLKESFEKSPRHDAY   81 (345)
Q Consensus         2 d~~RalLDeLMG~~Rn~~~~~~~~~~~~~~~D~~VCk~yL~g~CPhdLF~nTK~DlG~C~kiHd~~lK~~Ye~~~~~~~~   81 (345)
                      ++||++|+||||+++..-..    ...+||+|++||+||||||||||||+|||++||+||++|.+++|++|+...+...+
T Consensus         3 aeqRkv~eqLmG~~~s~f~~----~r~~hftd~kvC~s~Lvg~CP~dlF~nTk~slGkCp~~H~~k~K~~YeR~~~~~~~   78 (258)
T COG5200           3 AEQRKVLEQLMGPERSTFDP----CRPTHFTDKKVCISMLVGFCPFDLFRNTKRSLGKCPTSHEEKYKAEYERNGRERAE   78 (258)
T ss_pred             hHHHHHHHHHhCCCcccCCC----CCCccccchHHHHHHHHccCcHHHHhccccccCCCcchhHHHHHHHHhhhhhccch
Confidence            78999999999999863222    23468999999999999999999999999999999999999999999999988899


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Q 019171           82 VPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALM  161 (345)
Q Consensus        82 ~~~yE~e~~~~L~~li~d~drkI~~~k~RL~~~~e~~~~~~~~~e~~e~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~  161 (345)
                        +|||+|+..|..+|.+|+..|..|-.++..|+++-   ..+.++.+.+..+.+.|+.|..+++.|...-.|+.|....
T Consensus        79 --~yEweyl~~L~r~V~~cn~~I~~a~~~~~~t~ee~---~kI~e~~e~~~~~d~sIg~lg~e~dalakrk~V~~a~~~f  153 (258)
T COG5200          79 --EYEWEYLRLLVRIVLSCNDGIRAAGLEDRTTPEEF---GKIKEKEELFNRVDESIGELGMEGDALAKRKLVERACSAF  153 (258)
T ss_pred             --hhhHHHHHHHHHHHHHhcchhhhhhhhccCCHHHH---HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence              99999999999999999999999988887665332   2344555555555555555555555555555599999999


Q ss_pred             HHHHHHHHHHHHHHhhhhh--hhhhhHHHhhcCcccccchhhhcccchHHHhhhhhccccccchHHHHHHHHHHHHHH
Q 019171          162 RKVEILNVEKTTLTQQSQN--DKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAK  237 (345)
Q Consensus       162 ~~ve~Lk~ek~~le~~~~~--~~~~~~~~~qkm~VCeVCGA~Ls~~D~d~Rl~dH~~GK~HlGy~kIRe~l~eLk~~~  237 (345)
                      .+++.|+.+++++...+ .  ++|++++.+|||+||+|||||||.+|||+||||||.||+|+||+++|..|+.|-+..
T Consensus       154 ~el~rl~~~rkei~~~v-~sm~en~gq~thqklqvC~iCgayLsrlDtdrrladHf~GklHlGy~~~R~dl~~llk~~  230 (258)
T COG5200         154 NELERLREERKEIKEAV-YSMVENNGQGTHQKLQVCGICGAYLSRLDTDRRLADHFNGKLHLGYLLVRSDLADLLKKF  230 (258)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHhhCcchhhhhhhhhhhhhhhHHHhcchhhHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence            99999999999999887 5  467788899999999999999999999999999999999999999999999887754

>KOG0796 consensus Spliceosome subunit [RNA processing and modification]

Probab=98.44  E-value=2.6e-06  Score=82.81  Aligned_cols=146  Identities=15%  Similarity=0.101  Sum_probs=104.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 019171           84 KFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRK  163 (345)
Q Consensus        84 ~yE~e~~~~L~~li~d~drkI~~~k~RL~~~~e~~~~~~~~~e~~e~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~  163 (345)
                      .++..++--.+ |+..|.+-|.-...+++...+....+  ..+..+......++|..|.++|+.|+++.+-.+.++.+.+
T Consensus        73 ~k~~~~~~E~d-~~~~l~~~v~d~~rri~~~kerL~e~--~ee~~~e~~~k~~~v~~l~e~I~~~l~~~E~LG~eG~Vee  149 (319)
T KOG0796|consen   73 SKERDYGYEWD-ALEILERFVADVDRRIEKAKERLAET--VEERSEEAARKAEKVHELEEKIGKLLEKAEELGEEGNVEE  149 (319)
T ss_pred             hHhhhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence            34455444444 89999999999999987654333211  1233344444477899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh-hhhhhh----hhhHHHh-hcCcccccchhhhcccchHHHhhhhhccccccchH----------HHH
Q 019171          164 VEILNVEKTTLTQ-QSQNDK----VLMMAQE-KKMALCEICGSFLVANDAAERTQSHISGKQHIGYG----------MVR  227 (345)
Q Consensus       164 ve~Lk~ek~~le~-~~~~~~----~~~~~~~-qkm~VCeVCGA~Ls~~D~d~Rl~dH~~GK~HlGy~----------kIR  227 (345)
                      ++.+..+.+.|.. +. ...    +..+++. -+.+...||++|.+              .+-++.+          ||+
T Consensus       150 aq~~~~e~E~lk~~e~-e~~~~~~~~~~~~~~~~~qkl~VCeVCGa--------------~L~~~D~d~RlaDHf~GKlH  214 (319)
T KOG0796|consen  150 AQKAMKEVEELKAKEK-EEAEESYNTTMPGASAQQQKLRVCEVCGA--------------FLSVNDADRRLADHFGGKLH  214 (319)
T ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHccCcchhhhhhhhhhHHHhhhH--------------HHhccchHHHHHHhhcchHH
Confidence            9999999999986 32 221    1122222 26788999999999              5566654          899


Q ss_pred             HHHHHHHHHHHHhHHHHhhh
Q 019171          228 DFITEYKEAKEKAREEERLA  247 (345)
Q Consensus       228 e~l~eLk~~~~~~~e~~r~~  247 (345)
                      -.|..+.+++.+..+.....
T Consensus       215 lGy~~iR~~l~eLk~~~~~~  234 (319)
T KOG0796|consen  215 LGYVLIREKLAELKKEKAKR  234 (319)
T ss_pred             HHHHHHHHHHHHHHHHHhHH
Confidence            99999999988765555443

>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes

Probab=97.14  E-value=0.0027  Score=60.75  Aligned_cols=138  Identities=15%  Similarity=0.152  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 019171           91 QFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVE  170 (345)
Q Consensus        91 ~~L~~li~d~drkI~~~k~RL~~~~e~~~~~~~~~e~~e~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~e  170 (345)
                      .|-..|+..|.+-|...-.|++...+.....+........ ....++|..|..+|..|..+-+.-++++.+.+++.+..+
T Consensus        79 ~YE~e~~~~L~~~i~d~drrI~~~k~RL~~~~~~~~~~~~-~~~~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~  157 (254)
T PF03194_consen   79 GYEREFLRYLQRLIRDCDRRIERAKERLEQTQEEQAKEAD-EEKAEKIDELDEKIGELLKEAEELGEEGDVDEAQKLMEE  157 (254)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccchh-hhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            5889999999999999999998776433321111111111 112889999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhh-hh----hhH----HHhhcCcccccchhhhcccchHHHhhhhhccccccchH----------HHHHHHH
Q 019171          171 KTTLTQQSQND-KV----LMM----AQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYG----------MVRDFIT  231 (345)
Q Consensus       171 k~~le~~~~~~-~~----~~~----~~~qkm~VCeVCGA~Ls~~D~d~Rl~dH~~GK~HlGy~----------kIRe~l~  231 (345)
                      .+.|..+. .. ..    ...    +.....+-..||.++.+              .+-++..          ||+-.|.
T Consensus       158 ~e~Lk~ek-~~le~~~~~~~~~~~~~~~~~~qkl~VCeVCGA--------------~Ls~~D~d~RladH~~GK~HlGy~  222 (254)
T PF03194_consen  158 VEKLKEEK-EELEKELEEYRNSIENSAQSQQQKLEVCEVCGA--------------FLSVGDNDRRLADHFGGKQHLGYA  222 (254)
T ss_pred             HHHHHHHH-HHHHhhhhhhhhhhhhhhcccccCccchhhhhh--------------HHhccchHHHHHHHhccchhhhHH
Confidence            99998875 32 11    111    01245678899999998              5556554          8999999


Q ss_pred             HHHHHHHHhHHHH
Q 019171          232 EYKEAKEKAREEE  244 (345)
Q Consensus       232 eLk~~~~~~~e~~  244 (345)
                      .|++++++-.+..
T Consensus       223 ~IR~~l~el~e~~  235 (254)
T PF03194_consen  223 KIREKLKELKEKR  235 (254)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999887754433

LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].

>COG5200 LUC7 U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]

Probab=94.70  E-value=0.27  Score=45.98  Aligned_cols=144  Identities=13%  Similarity=0.067  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH----HHHHH
Q 019171           92 FCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMR----KVEIL  167 (345)
Q Consensus        92 ~L~~li~d~drkI~~~k~RL~~~~e~~~~~~~~~e~~e~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~----~ve~L  167 (345)
                      |--.++..+.+-+.....++.....+   ...+++...+|+++++.|+-+-..|+.||.+|+.-.--++++    ...+|
T Consensus        80 yEweyl~~L~r~V~~cn~~I~~a~~~---~~~t~ee~~kI~e~~e~~~~~d~sIg~lg~e~dalakrk~V~~a~~~f~el  156 (258)
T COG5200          80 YEWEYLRLLVRIVLSCNDGIRAAGLE---DRTTPEEFGKIKEKEELFNRVDESIGELGMEGDALAKRKLVERACSAFNEL  156 (258)
T ss_pred             hhHHHHHHHHHHHHHhcchhhhhhhh---ccCCHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            67788888888888888887644211   135678889999999999999999999999987433333332    23333


Q ss_pred             HHHHHHHHhhhhhhhhhh--HHHhhcCcccccchhhhcccchHHHhhhhhccccccchHHHHHHHHHHHHHHHHhHHH
Q 019171          168 NVEKTTLTQQSQNDKVLM--MAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKEAKEKAREE  243 (345)
Q Consensus       168 k~ek~~le~~~~~~~~~~--~~~~qkm~VCeVCGA~Ls~~D~d~Rl~dH~~GK~HlGy~kIRe~l~eLk~~~~~~~e~  243 (345)
                      +.-+...+.-+ .+-.++  ...|..-+..+|||.+..   +-.||+.---=--|.. .+|+-.|..+...+....+.
T Consensus       157 ~rl~~~rkei~-~~v~sm~en~gq~thqklqvC~iCga---yLsrlDtdrrladHf~-GklHlGy~~~R~dl~~llk~  229 (258)
T COG5200         157 ERLREERKEIK-EAVYSMVENNGQGTHQKLQVCGICGA---YLSRLDTDRRLADHFN-GKLHLGYLLVRSDLADLLKK  229 (258)
T ss_pred             HHHHHHHHHHH-HHHHHHhhCcchhhhhhhhhhhhhhh---HHHhcchhhHHHHHhc-cchhhhHHHHHHHHHHHHHH
Confidence            33333333322 111222  335667788999999977   4456543221111221 38888888888766555554

>KOG2888 consensus Putative RNA binding protein [General function prediction only]

Probab=93.61  E-value=0.043  Score=54.27  Aligned_cols=26  Identities=31%  Similarity=0.442  Sum_probs=11.6

Q ss_pred             hhcCCHHHHHHHHHHHHHHHHHHHHH
Q 019171          149 GEAGKVDEAEALMRKVEILNVEKTTL  174 (345)
Q Consensus       149 GeeG~VdeA~~l~~~ve~Lk~ek~~l  174 (345)
                      |+-|=|.-|.=|+=++=.|+--+++|
T Consensus       120 gaggivSTAyCLLYklftlklTrKQ~  145 (453)
T KOG2888|consen  120 GAGGIVSTAYCLLYKLFTLKLTRKQL  145 (453)
T ss_pred             CcCcchhhHHHHHHHHHHHHhHHHHH
Confidence            33344444444444444444444443

>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]

Probab=91.93  E-value=0.26  Score=51.94  Aligned_cols=17  Identities=12%  Similarity=0.329  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 019171          158 EALMRKVEILNVEKTTL  174 (345)
Q Consensus       158 ~~l~~~ve~Lk~ek~~l  174 (345)
                      .++|..++.|+.+..+.
T Consensus       257 ~~~~~~~~~~~~qh~~~  273 (757)
T KOG4368|consen  257 LAFQQQIQTLKTQHEEF  273 (757)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            35666777776665554

>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]

Probab=91.57  E-value=0.14  Score=51.79  Aligned_cols=38  Identities=13%  Similarity=-0.010  Sum_probs=17.5

Q ss_pred             hcCCCCCCChhhhhhccccCCCCCCCcchhhcCCChhHhhhhccc
Q 019171           11 LMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRS   55 (345)
Q Consensus        11 LMG~~Rn~~~~~~~~~~~~~~~D~~VCk~yL~g~CPhdLF~nTK~   55 (345)
                      ||+...|++...-....-|.|+|+..-       ---.+++||..
T Consensus        39 lyp~~~d~~~pv~sRtcyVkf~d~~sv-------~vaQhLtntvf   76 (479)
T KOG4676|consen   39 LYPNVDDSKIPVISRTCYVKFLDSQSV-------TVAQHLTNTVF   76 (479)
T ss_pred             ccCCCCCccCcceeeeEEEeccCCcce-------eHHhhhcccee
Confidence            466555544322111233567666521       11345666654

>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]

Probab=90.08  E-value=0.22  Score=50.38  Aligned_cols=7  Identities=29%  Similarity=0.349  Sum_probs=4.0

Q ss_pred             ccccchH
Q 019171          218 KQHIGYG  224 (345)
Q Consensus       218 K~HlGy~  224 (345)
                      -||.-|+
T Consensus       215 ~qhsr~a  221 (479)
T KOG4676|consen  215 RQHSRRA  221 (479)
T ss_pred             hhhhhhh
Confidence            4566565

>PHA02562 46 endonuclease subunit; Provisional

Probab=87.88  E-value=8.7  Score=39.93  Aligned_cols=15  Identities=20%  Similarity=0.503  Sum_probs=11.4

Q ss_pred             cCcccccchhhhccc
Q 019171          191 KMALCEICGSFLVAN  205 (345)
Q Consensus       191 km~VCeVCGA~Ls~~  205 (345)
                      .-.+|++|+.-+...
T Consensus       283 ~~~~Cp~C~~~~~~~  297 (562)
T PHA02562        283 KGGVCPTCTQQISEG  297 (562)
T ss_pred             CCCCCCCCCCcCCCc
Confidence            346999999887643

>PRK01156 chromosome segregation protein; Provisional

Probab=87.45  E-value=9.6  Score=42.33  Aligned_cols=15  Identities=7%  Similarity=0.011  Sum_probs=12.1

Q ss_pred             Ccccccchhhhcccc
Q 019171          192 MALCEICGSFLVAND  206 (345)
Q Consensus       192 m~VCeVCGA~Ls~~D  206 (345)
                      |.+|+||+.|+.-.+
T Consensus       449 l~~~~~Cp~c~~~~~  463 (895)
T PRK01156        449 LNGQSVCPVCGTTLG  463 (895)
T ss_pred             hccCCCCCCCCCcCC
Confidence            448999999988766

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=86.93  E-value=0.26  Score=30.67  Aligned_cols=25  Identities=20%  Similarity=0.700  Sum_probs=21.3

Q ss_pred             cccccchhhhcccchHHHhhhhhccccc
Q 019171          193 ALCEICGSFLVANDAAERTQSHISGKQH  220 (345)
Q Consensus       193 ~VCeVCGA~Ls~~D~d~Rl~dH~~GK~H  220 (345)
                      ..|++|+..++   ++.=+..|+.||.|
T Consensus         2 ~~C~~C~k~f~---~~~~~~~H~~sk~H   26 (27)
T PF12171_consen    2 FYCDACDKYFS---SENQLKQHMKSKKH   26 (27)
T ss_dssp             CBBTTTTBBBS---SHHHHHCCTTSHHH
T ss_pred             CCcccCCCCcC---CHHHHHHHHccCCC
Confidence            47999997766   77779999999988

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PRK02224 chromosome segregation protein; Provisional

Probab=86.71  E-value=15  Score=40.62  Aligned_cols=13  Identities=23%  Similarity=0.554  Sum_probs=10.3

Q ss_pred             cCcccccchhhhc
Q 019171          191 KMALCEICGSFLV  203 (345)
Q Consensus       191 km~VCeVCGA~Ls  203 (345)
                      ...+|++||..+.
T Consensus       450 ~~~~Cp~C~r~~~  462 (880)
T PRK02224        450 EAGKCPECGQPVE  462 (880)
T ss_pred             hcccCCCCCCcCC
Confidence            3579999998765

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=86.27  E-value=4.9  Score=38.37  Aligned_cols=19  Identities=26%  Similarity=0.588  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 019171           93 CEKLVMDLDRRVRRGRERL  111 (345)
Q Consensus        93 L~~li~d~drkI~~~k~RL  111 (345)
                      ++.=|.++..+|.++...|
T Consensus        64 ~e~ei~~~r~r~~~~e~kl   82 (239)
T COG1579          64 LESEIQEIRERIKRAEEKL   82 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4555666667777776666

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=86.13  E-value=7.7  Score=35.71  Aligned_cols=82  Identities=22%  Similarity=0.297  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 019171           91 QFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVE  170 (345)
Q Consensus        91 ~~L~~li~d~drkI~~~k~RL~~~~e~~~~~~~~~e~~e~i~~l~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~e  170 (345)
                      ..|..+|.+++.-|..++.-|....      ........++..+...|..+..+|+.....|+=+-|...+.....+..+
T Consensus        26 ~~l~q~ird~e~~l~~a~~~~a~~~------a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~   99 (221)
T PF04012_consen   26 KMLEQAIRDMEEQLRKARQALARVM------ANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQ   99 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            6789999999999999998886532      2334567789999999999999999999999999998888877777777


Q ss_pred             HHHHHhhh
Q 019171          171 KTTLTQQS  178 (345)
Q Consensus       171 k~~le~~~  178 (345)
                      ...++..+
T Consensus       100 ~~~l~~~~  107 (221)
T PF04012_consen  100 AERLEQQL  107 (221)
T ss_pred             HHHHHHHH
Confidence            77776654

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]

Probab=85.62  E-value=0.4  Score=51.71  Aligned_cols=9  Identities=44%  Similarity=0.638  Sum_probs=3.8

Q ss_pred             HHHHHHHHh
Q 019171            3 AQRALLDEL   11 (345)
Q Consensus         3 ~~RalLDeL   11 (345)
                      .||+-|+.|
T Consensus       431 ~qRdklE~l  439 (877)
T KOG0151|consen  431 LQRDKLEDL  439 (877)
T ss_pred             HHHHHHHHH
Confidence            344444444

>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302

Probab=85.46  E-value=1.8  Score=48.08  Aligned_cols=35  Identities=23%  Similarity=0.516  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH
Q 019171          138 IKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKT  172 (345)
Q Consensus       138 I~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~  172 (345)
                      +..||.+||+|.+.|..++|+.++.+++.+.+-..
T Consensus       570 Lq~Mmd~ieela~~G~~~~A~qlL~qlq~mmenlq  604 (851)
T TIGR02302       570 LQNMMDQIENLARSGDRDQAKQLLSQLQQMMNNLQ  604 (851)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence            77999999999999999999999999988865443

Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=85.33  E-value=0.29  Score=29.54  Aligned_cols=24  Identities=25%  Similarity=0.699  Sum_probs=19.8

Q ss_pred             ccccchhhhcccchHHHhhhhhccccc
Q 019171          194 LCEICGSFLVANDAAERTQSHISGKQH  220 (345)
Q Consensus       194 VCeVCGA~Ls~~D~d~Rl~dH~~GK~H  220 (345)
                      .|+||++-..   +..=+..|+.|+.|
T Consensus         2 ~C~~C~~~f~---s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    2 YCDICNKSFS---SENSLRQHLRSKKH   25 (25)
T ss_dssp             EETTTTEEES---SHHHHHHHHTTHHH
T ss_pred             CCCCCCCCcC---CHHHHHHHHCcCCC
Confidence            5999987665   66779999999987

>smart00451 ZnF_U1 U1-like zinc finger

Probab=85.03  E-value=0.36  Score=31.35  Aligned_cols=28  Identities=21%  Similarity=0.538  Sum_probs=21.3

Q ss_pred             cccccchhhhcccchHHHhhhhhccccccch
Q 019171          193 ALCEICGSFLVANDAAERTQSHISGKQHIGY  223 (345)
Q Consensus       193 ~VCeVCGA~Ls~~D~d~Rl~dH~~GK~HlGy  223 (345)
                      .-|++|+..+.   +..=+..|+.||.|..-
T Consensus         4 ~~C~~C~~~~~---~~~~~~~H~~gk~H~~~   31 (35)
T smart00451        4 FYCKLCNVTFT---DEISVEAHLKGKKHKKN   31 (35)
T ss_pred             eEccccCCccC---CHHHHHHHHChHHHHHH
Confidence            45999999765   34445999999999643

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF13779 DUF4175: Domain of unknown function (DUF4175)

Probab=82.40  E-value=6.3  Score=43.91  Aligned_cols=35  Identities=20%  Similarity=0.588  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Q 019171          135 EEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNV  169 (345)
Q Consensus       135 ~ekI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~  169 (345)
                      ...+..||.+||+|.++|..++|+.++.+++.+.+
T Consensus       537 ~~dL~~mmd~ie~la~~G~~~~A~q~L~qlq~mme  571 (820)
T PF13779_consen  537 QQDLQRMMDRIEELARSGRMDEARQLLEQLQQMME  571 (820)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            44567899999999999999999999999888765

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=82.23  E-value=32  Score=38.56  Aligned_cols=24  Identities=17%  Similarity=0.340  Sum_probs=17.1

Q ss_pred             CcccccchhhhcccchHHHhhhhhc
Q 019171          192 MALCEICGSFLVANDAAERTQSHIS  216 (345)
Q Consensus       192 m~VCeVCGA~Ls~~D~d~Rl~dH~~  216 (345)
                      ..+|+|||.-|- +.....+.+|+.
T Consensus       457 ~~~CPvCg~~l~-~~~~~~~~~~~~  480 (908)
T COG0419         457 GEKCPVCGQELP-EEHEKELLELYE  480 (908)
T ss_pred             CCCCCCCCCCCC-cHHHHHHHHHHH
Confidence            578999995544 333667888887

>PRK06835 DNA replication protein DnaC; Validated

Probab=80.38  E-value=11  Score=37.46  Aligned_cols=71  Identities=14%  Similarity=0.128  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHhhcCcccccchhhhcc
Q 019171          130 QLSVLEEKIKNLLEQVETLGEAGK---VDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFLVA  204 (345)
Q Consensus       130 ~i~~l~ekI~~ll~eaE~LGeeG~---VdeA~~l~~~ve~Lk~ek~~le~~~~~~~~~~~~~~qkm~VCeVCGA~Ls~  204 (345)
                      +|.+|+.+|..+-.++-...-.|+   -+....+-+++..|..++.+|-... .-+   ...-..-..|+.|+=-..+
T Consensus        37 ~~~~id~~i~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~lL~~~-g~~---~dyl~~~y~Cp~C~dtG~i  110 (329)
T PRK06835         37 EIAEIDDEIAKLGIKLSRAILKNPDKKEETLKELKEKITDLRVKKAELLVSN-GYP---PDYLEMKYTCPKCKDTGFI  110 (329)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHc-CCC---hhhcCCCCCCCCCCCCCCc
Confidence            456667777666555544444555   4455567777888888877776543 110   0011222579999876555

>KOG2888 consensus Putative RNA binding protein [General function prediction only]

Probab=80.31  E-value=0.82  Score=45.48  Aligned_cols=10  Identities=20%  Similarity=0.208  Sum_probs=4.1

Q ss_pred             HHHHHHHHHH
Q 019171           89 LAQFCEKLVM   98 (345)
Q Consensus        89 ~~~~L~~li~   98 (345)
                      |..+++.||.
T Consensus       174 Lw~WyEpyld  183 (453)
T KOG2888|consen  174 LWDWYEPYLD  183 (453)
T ss_pred             HHHHhhhhcc
Confidence            3334444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	345
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	3e-04
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	4e-04

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 40.5 bits (94), Expect = 3e-04
 Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 7/75 (9%)

Query: 228 DFITEYKEAKEKAREE--ERLAKEKEVEDRRKQR-----EKEYESRKRSGSSDRDRYRDR 280
           D +T+  E+  K REE  +RL +        +Q      +K+ E   +  S   ++ +  
Sbjct: 78  DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 137

Query: 281 DRDRERERYRERDRE 295
           +R  ++  Y++ D +
Sbjct: 138 NRIADKAFYQQPDAD 152

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A* Length = 437

 Score = 41.0 bits (95), Expect = 4e-04
 Identities = 18/112 (16%), Positives = 40/112 (35%)

Query: 233 YKEAKEKAREEERLAKEKEVEDRRKQREKEYESRKRSGSSDRDRYRDRDRDRERERYRER 292
            +  +E+ R+EE      ++ +  +  +   +                ++ R+R+R R R
Sbjct: 297 ERARRERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRR 356

Query: 293 DRERSREWDGRSGRDGGRGADWRSRDRHRDRSRSRSPVRHGHRRSPRSPVRQ 344
                RE      RD  R  + +  +R  +R R  +    G + +    +  
Sbjct: 357 SHRSERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGN 408

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	345
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	94.11
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	90.67
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	89.96

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=94.11  E-value=0.3  Score=39.17  Aligned_cols=12  Identities=33%  Similarity=0.808  Sum_probs=10.2

Q ss_pred             Ccccccchhhhc
Q 019171          192 MALCEICGSFLV  203 (345)
Q Consensus       192 m~VCeVCGA~Ls  203 (345)
                      -.+|+|||.-|.
T Consensus        47 g~~CPvCgs~l~   58 (112)
T 1l8d_A           47 KGKCPVCGRELT   58 (112)
T ss_dssp             SEECTTTCCEEC
T ss_pred             CCCCCCCCCcCC
Confidence            578999999876

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=90.67  E-value=1.2  Score=40.87  Aligned_cols=62  Identities=13%  Similarity=0.167  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCC---chhhHHHHHHHHHHHHHHHHHHHHHhh
Q 019171           89 LAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPI---SAEKSEQLSVLEEKIKNLLEQVETLGE  150 (345)
Q Consensus        89 ~~~~L~~li~d~drkI~~~k~RL~~~~e~~~~~~~---~~e~~e~i~~l~ekI~~ll~eaE~LGe  150 (345)
                      -+.-++.-|.++..+|.+.+.+|............   .......+..++++|..++.++|.+-+
T Consensus        61 ~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~  125 (256)
T 3na7_A           61 QVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSE  125 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35568889999999999999999653210000000   112234566667777777777766543

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=89.96  E-value=0.09  Score=52.30  Aligned_cols=8  Identities=25%  Similarity=0.322  Sum_probs=3.2

Q ss_pred             cchhhhcc
Q 019171          197 ICGSFLVA  204 (345)
Q Consensus       197 VCGA~Ls~  204 (345)
                      |+|..|.|
T Consensus       169 i~gr~i~V  176 (437)
T 3pgw_S          169 IDGRRVLV  176 (437)
T ss_pred             ECCEEEEE
Confidence            34444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	345
d256ba_	106	Cytochrome b562 {Escherichia coli [TaxId: 562]}	93.9
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	93.75
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	84.52

>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Cytochromes
family: Cytochrome b562
domain: Cytochrome b562
species: Escherichia coli [TaxId: 562]

Probab=93.90  E-value=0.18  Score=38.84  Aligned_cols=34  Identities=21%  Similarity=0.296  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Q 019171          137 KIKNLLEQVETLGEAGKVDEAEALMRKVEILNVE  170 (345)
Q Consensus       137 kI~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~e  170 (345)
                      ++..+|..|++|.++|++++|+.++.+++.++.+
T Consensus        67 ~L~~~ld~i~~la~~G~l~eAk~~l~~l~~~r~~  100 (106)
T d256ba_          67 ILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNA  100 (106)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            4667889999999999999999999999999864

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.75  E-value=0.012  Score=35.31  Aligned_cols=24  Identities=42%  Similarity=1.232  Sum_probs=18.9

Q ss_pred             CCCcchhhcCCChhHhhhhcccCCCCCCCCCcH
Q 019171           34 KEVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQ   66 (345)
Q Consensus        34 ~~VCk~yL~g~CPhdLF~nTK~DlG~C~kiHd~   66 (345)
                      .++||+||-|+|       ||.+  .|+-+|++
T Consensus         6 kelCKfYvqGyC-------trge--nC~ymH~e   29 (29)
T d2cqea2           6 RELCKFYITGFC-------ARAE--NCPYMHGD   29 (29)
T ss_dssp             CSBCTTTTTTCC-------SCST--TCSSBSSS
T ss_pred             hhhhhhheeeee-------cCCc--CcccccCC
Confidence            379999999999       4543  68888864

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=84.52  E-value=0.097  Score=37.60  Aligned_cols=26  Identities=19%  Similarity=0.676  Sum_probs=20.9

Q ss_pred             cccccchhhhcccchHHHhhhhhcccccc
Q 019171          193 ALCEICGSFLVANDAAERTQSHISGKQHI  221 (345)
Q Consensus       193 ~VCeVCGA~Ls~~D~d~Rl~dH~~GK~Hl  221 (345)
                      --|.||||.|+   .++--..||.||.|-
T Consensus        33 ~~CkvC~a~L~---seSQriaHYeskkHa   58 (72)
T d1zu1a1          33 TQCKVCSAVLI---SESQKLAHYQSRKHA   58 (72)
T ss_dssp             SEETTTTEECC---SHHHHHHHHHCHHHH
T ss_pred             hhHHHhHHHHH---HHHHHHHHHHHHHHH
Confidence            57999999988   445555799999995