BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019172
(345 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82290|SKL2_ARATH Probable inactive shikimate kinase like 2, chloroplastic
OS=Arabidopsis thaliana GN=SKL2 PE=2 SV=2
Length = 387
Score = 324 bits (831), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 181/296 (61%), Positives = 220/296 (74%), Gaps = 12/296 (4%)
Query: 3 AAAATYHHLSLSSISQNPISKSET-----QHFSSPRHSVSIFKPIFISSSLHKSTNVVPI 57
AA A+ + +S S NP++ T + SSPR S F + S NV+P
Sbjct: 2 AAFASGLAIIFNSPSLNPVTTQATFLSSNRIRSSPR-VFSGFHSLRRRGFRRFSQNVIP- 59
Query: 58 KTHDR-RRFTCSNSLSSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCL 116
DR F+C N LS++ +T YEF+DG E+ELRL+L + EI S KDI VDADGT L
Sbjct: 60 ---DRFNSFSC-NCLSAVSTSTIDYEFTDGGKEVELRLRLKTGEILSPKDISVDADGTSL 115
Query: 117 TVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESL 176
V+ R+G ITL+ETN LF+KI P+ETIWYIDEDQLV+N+KK D ELKWPDIVESWESL
Sbjct: 116 AVKEKRNGLLITLLETNHLFEKIMPSETIWYIDEDQLVVNMKKVDGELKWPDIVESWESL 175
Query: 177 TAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAE 236
TAG MQLLKG SI++VGDSTE+N+KV+ ELAVGLGY+PL +KELLE+F+KQTIDSW+LAE
Sbjct: 176 TAGMMQLLKGASIYIVGDSTEINQKVSRELAVGLGYSPLDSKELLESFSKQTIDSWILAE 235
Query: 237 GSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEA 292
G DSV E VLESLSSHVR VV+TLGG+ GAA RAD+W+HLY+GFTVW+SQTEA
Sbjct: 236 GPDSVAEAESSVLESLSSHVRTVVSTLGGKHGAAGRADQWRHLYSGFTVWVSQTEA 291
>sp|Q5N4D3|AROK_SYNP6 Shikimate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301
/ SAUG 1402/1) GN=aroK PE=3 SV=1
Length = 190
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
L G +FLVG + LA LGYT + T L+E ++I ++G
Sbjct: 7 LNGLDLFLVGLMGSGKTTIGKLLAESLGYTYVDTDSLIENVTGRSIPEIFASDGEAGFRQ 66
Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
E VLE ++S+ R VVAT G G R + W +L G +WL
Sbjct: 67 IETQVLEEVASYRRLVVATGG---GIVIRPENWSYLQQGLVIWL 107
>sp|Q31PU5|AROK_SYNE7 Shikimate kinase OS=Synechococcus elongatus (strain PCC 7942)
GN=aroK PE=3 SV=1
Length = 190
Score = 55.5 bits (132), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
L G +FLVG + LA LGYT + T L+E ++I ++G
Sbjct: 7 LNGLDLFLVGLMGSGKTTIGKLLAESLGYTYVDTDSLIENVTGRSIPEIFASDGEAGFRQ 66
Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
E VLE ++S+ R VVAT G G R + W +L G +WL
Sbjct: 67 IETQVLEEVASYRRLVVATGG---GIVIRPENWSYLQQGLVIWL 107
>sp|P72796|AROK_SYNY3 Shikimate kinase OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=aroK PE=3 SV=1
Length = 189
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
L+G ++FL+G V LA LGY L+E A + I +G D+ +
Sbjct: 10 LQGVNLFLIGMMGSGKSTVGPLLAEQLGYRFFDADVLIERVAGKAIADIFAEDGEDTFRD 69
Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLS 288
E +VL L++ R+V+AT G G R W +L+ G +WL
Sbjct: 70 LETEVLGHLAAQTRSVIATGG---GVVLRRQNWSYLHHGLVIWLD 111
>sp|Q2JKT7|AROK_SYNJB Shikimate kinase OS=Synechococcus sp. (strain JA-2-3B'a(2-13))
GN=aroK PE=3 SV=1
Length = 187
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 3/104 (2%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
L+G +++L+G V ELA L + T L+E +I G +
Sbjct: 10 LRGVNVYLIGMMGSGKSTVGSELAAQLRFQFFDTDGLVEQVGGSSIAQIFAEHGEAYFRD 69
Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
E VL LSS+ R V+AT G G R W +L+ G TVWL
Sbjct: 70 LETQVLAQLSSYTRLVIATGG---GIVLRPKNWSYLHHGLTVWL 110
>sp|Q3MFQ9|AROK_ANAVT Shikimate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC
7937) GN=aroK PE=3 SV=1
Length = 181
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVV 242
LL+G +++L+G V LA LGY L T ++ AK++I+ G
Sbjct: 4 LLQGVNLYLIGMMGAGKTTVGHLLAQELGYGFLDTDNVIAQAAKKSINEIFAEAGEAGFR 63
Query: 243 NGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
E DVL + S+ + VAT G G R + W +L+ G VWL
Sbjct: 64 QIESDVLAQVCSYTKLTVATGG---GIVLRRENWSYLHHGLIVWL 105
>sp|B7JZT6|AROK_CYAP8 Shikimate kinase OS=Cyanothece sp. (strain PCC 8801) GN=aroK PE=3
SV=1
Length = 187
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Query: 180 SMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSD 239
+ +LL+G +I+L+G + LA L Y T L+E +Q+I+ + +G
Sbjct: 3 TQKLLQGINIYLIGMMGSGKSTIGKILAQRLDYRFFDTDILIERVTQQSINDIFVTQGET 62
Query: 240 SVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
+ E VL +++ R+V+AT GG G + W +L+ G +WL
Sbjct: 63 VFRDIETQVLSEVAACTRSVIAT-GG--GIVLNSQNWSYLHHGLIIWL 107
>sp|Q2JRJ6|AROK_SYNJA Shikimate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=aroK
PE=3 SV=1
Length = 189
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
L+G +++L+G + ELA L T L+E A +I +G
Sbjct: 10 LRGVTVYLIGMMASGKSTLGAELAAQLRRPFFDTDALVEQVAGCSIAQIFAEQGEAHFRE 69
Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
E VL LS + R VVAT G G R W +L+ G TVWL
Sbjct: 70 LETQVLAQLSGYTRLVVATGG---GIVLRPKNWSYLHHGLTVWL 110
>sp|Q8YXG9|AROK_NOSS1 Shikimate kinase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=aroK PE=3 SV=1
Length = 181
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVV 242
LL+G +++L+G V LA LGY L T ++ K++I+ G
Sbjct: 4 LLQGVNLYLIGMMGAGKTTVGHLLAKELGYGFLDTDNVIAQATKKSINEIFAEAGEAGFR 63
Query: 243 NGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
E DVL + S+ + VAT G G R + W +L+ G +WL
Sbjct: 64 QIESDVLAQVCSYTKLTVATGG---GIVLRRENWSYLHHGLILWL 105
>sp|Q5NTH3|SK2_ORYSJ Shikimate kinase 2, chloroplastic OS=Oryza sativa subsp. japonica
GN=SK2 PE=1 SV=1
Length = 307
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVV- 242
L G I+LVG VA LA LGY+ + +L+E + + E S++
Sbjct: 92 LNGRCIYLVGMMGSGKSTVAKILAEVLGYSFFDSDKLVEQAVGMPSVAQIFKEHSEAFFR 151
Query: 243 NGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
+ E VL LSS R VVAT G GA R W+++ G +VWL
Sbjct: 152 DNESSVLRDLSSMRRLVVATGG---GAVIRPVNWKYMKKGLSVWL 193
>sp|Q00497|SK_SOLLC Shikimate kinase, chloroplastic OS=Solanum lycopersicum GN=SK PE=1
SV=1
Length = 300
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 13/134 (9%)
Query: 168 DIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ 227
D +E+ ++ + L G ++LVG V LA LGY+ L+E Q
Sbjct: 86 DEIETLKNKAEEVEEYLDGRCVYLVGMMGCGKTTVGRILAETLGYSFFDCDRLIE----Q 141
Query: 228 TIDSWMLAE-----GSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAG 282
+ +AE G + E +VL LS R VV+T GG A R W+H++ G
Sbjct: 142 AVGGITVAEIFELRGESFFRDNETEVLHKLSLMHRLVVSTGGG---AVVRPINWRHMHKG 198
Query: 283 FTVWLS-QTEAMGK 295
+VWL EA+ K
Sbjct: 199 ISVWLDVPLEALAK 212
>sp|Q7VE85|AROK_PROMA Shikimate kinase OS=Prochlorococcus marinus (strain SARG / CCMP1375
/ SS120) GN=aroK PE=3 SV=1
Length = 190
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 3/105 (2%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
L G I+LVG LA L Y+ + EL+E AK ++ EG + +
Sbjct: 14 LGGRIIYLVGMMGSGKSTTGPHLAKLLKYSFIDQDELIEKVAKSSVSQIFREEGENGFRD 73
Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLS 288
E VL+ + VVAT G G R++ W L+ G +WL
Sbjct: 74 IETQVLKQIGQRHSLVVATGG---GLVTRSENWGVLHQGIVIWLD 115
>sp|Q46HR4|AROK_PROMT Shikimate kinase OS=Prochlorococcus marinus (strain NATL2A) GN=aroK
PE=3 SV=1
Length = 198
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
L G +IFL+G + LA + Y + T +++E +KQ+I S +G +
Sbjct: 14 LGGRNIFLIGMMGSGKSQTGPVLAKMINYAFVDTDDVIEKASKQSISSIFEKDGEKVFRD 73
Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
E VL+ +S H V+AT G G + W L+ G +WL
Sbjct: 74 VEKKVLKEISQHHSLVIATGG---GLVTLPENWGILHQGIVIWL 114
>sp|Q9SJ05|SK1_ARATH Shikimate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=SK1
PE=1 SV=2
Length = 303
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
L G S++LVG V ++ LGYT L+E T + + ++
Sbjct: 100 LNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFR 159
Query: 244 G-ECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
G E D L+ LSS + VV+T GG A R W++++ G ++WL
Sbjct: 160 GKETDALKKLSSRYQVVVSTGGG---AVIRPINWKYMHKGISIWL 201
>sp|Q7NH27|AROK_GLOVI Shikimate kinase OS=Gloeobacter violaceus (strain PCC 7421) GN=aroK
PE=3 SV=1
Length = 177
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVV 242
+LKG S++LVG V LA LGY + L+E + + + EG
Sbjct: 1 MLKGVSLYLVGMMGSGKSTVGRLLAEKLGYGFVDLDALIEQVSGKRVGEIFEREGEAVFR 60
Query: 243 NGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
+ E VL +S++ R VVAT GG AR + W +L+ G VWL
Sbjct: 61 DLESRVLAEVSAYTRLVVATGGGV--VLARRN-WGYLHHGVVVWL 102
>sp|Q8GY88|SK2_ARATH Shikimate kinase 2, chloroplastic OS=Arabidopsis thaliana GN=SK2
PE=1 SV=1
Length = 300
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
L G S++LVG V +A LGYT L+E K T + + +SV
Sbjct: 96 LNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFR 155
Query: 244 -GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
E + L+ LS VV + GG GA R W++++ G ++WL
Sbjct: 156 EKETEALKKLSLMYHQVVVSTGG--GAVIRPINWKYMHKGISIWL 198
>sp|Q3B009|AROK_SYNS9 Shikimate kinase OS=Synechococcus sp. (strain CC9902) GN=aroK PE=3
SV=1
Length = 191
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 3/109 (2%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
L G SI+L+G LA LGY + ++E A TI +G +
Sbjct: 12 LSGRSIYLIGMMGSGKTSTGRPLAKRLGYGFVDADAVIEQVAGCTIPEIFERDGEAGFRS 71
Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEA 292
E VL ++S VVAT G G + + W L++G VWL A
Sbjct: 72 IESQVLNAISQRHSLVVATGG---GVVTKPENWGQLHSGIVVWLDVNRA 117
>sp|A2C650|AROK_PROM3 Shikimate kinase OS=Prochlorococcus marinus (strain MIT 9303)
GN=aroK PE=3 SV=1
Length = 192
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
Query: 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSV 241
Q L G +++LVG LA L Y + T ++E A Q I EG +
Sbjct: 12 QRLGGRNLYLVGMMASGKSSTGRPLAEQLSYGFVDTDAVIEQLAGQPIPKIFNEEGEEGF 71
Query: 242 VNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLS 288
E VL ++ VVAT GG ++ + W L+ G +WL+
Sbjct: 72 RAMESQVLNAIGQRHSLVVATGGGM---VSKPENWGILHQGIVIWLN 115
>sp|B2IX35|AROK_NOSP7 Shikimate kinase OS=Nostoc punctiforme (strain ATCC 29133 / PCC
73102) GN=aroK PE=3 SV=1
Length = 181
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Query: 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVV 242
LL+G +++L+G V LA LGY L ++ ++I+ EG
Sbjct: 4 LLQGVNLYLIGMMGVGKTTVGPLLAKHLGYGFLDLDGVIAKATDKSINQLFAEEGEAGFR 63
Query: 243 NGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLS 288
E DVL + + + +AT G G R + W +L+ G VWL
Sbjct: 64 QIESDVLSQVCAFTKLTIATGG---GIVLRRENWGYLHHGLIVWLD 106
>sp|Q8DKH7|AROK_THEEB Shikimate kinase OS=Thermosynechococcus elongatus (strain BP-1)
GN=aroK PE=3 SV=1
Length = 183
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
L G +I+LVG LA LGY+ + T ++ F ++ I EG +
Sbjct: 7 LGGANIYLVGMMGAGKTTTGRLLAQRLGYSFVDTDAVITAFRQRPIREIFAQEGEPAFRE 66
Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
E VL +SS+ VVAT G G W +L+ G VWL
Sbjct: 67 LEQQVLAQVSSYHHLVVATGG---GIVLNPMNWSYLHHGIVVWL 107
>sp|B0JFW8|AROK_MICAN Shikimate kinase OS=Microcystis aeruginosa (strain NIES-843)
GN=aroK PE=3 SV=1
Length = 190
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 3/105 (2%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
L+G S+FL+G + L+ L Y T L+E A + I + EG +
Sbjct: 10 LRGLSVFLLGMMGSGKSTLGELLSRRLQYRFFDTDILIERVAGKKIREIFVDEGEATFRE 69
Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLS 288
E VL LSS + V+AT GG + W +L G +WL
Sbjct: 70 LETQVLAELSSLTKTVIATGGGM---VLKPMNWSYLRHGLMIWLD 111
>sp|Q7V904|AROK_PROMM Shikimate kinase OS=Prochlorococcus marinus (strain MIT 9313)
GN=aroK PE=3 SV=1
Length = 192
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
Query: 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSV 241
Q L G +++LVG LA L Y + T ++E A Q I EG
Sbjct: 12 QRLGGRNLYLVGMMASGKSSTGRPLAEQLSYGFVDTDAVIEQLAGQPIPKIFSEEGEAGF 71
Query: 242 VNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLS 288
E VL ++ VVAT G G ++ + W L+ G +WL+
Sbjct: 72 RTMESQVLNAIGQRHSLVVATGG---GIVSKPENWGVLHQGIVIWLN 115
>sp|Q5NTH4|SK1_ORYSJ Shikimate kinase 1, chloroplastic OS=Oryza sativa subsp. japonica
GN=SK1 PE=1 SV=1
Length = 308
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVV- 242
L G I+LVG V ++ LGY+ + +L+E + + S++
Sbjct: 94 LNGRCIYLVGMMGSGKSTVGKIMSEVLGYSFFDSDKLVEQAVGMPSVAQIFKVHSEAFFR 153
Query: 243 NGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
+ E VL LSS R VVAT G GA R W+++ G +VWL
Sbjct: 154 DNESSVLRDLSSMKRLVVATGG---GAVIRPVNWKYMKKGLSVWL 195
>sp|Q3AH55|AROK_SYNSC Shikimate kinase OS=Synechococcus sp. (strain CC9605) GN=aroK PE=3
SV=1
Length = 199
Score = 39.7 bits (91), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
L G S++LVG LA LGY + ++E A +I +G +
Sbjct: 20 LSGRSLYLVGMMGSGKTSTGRPLAERLGYGFVDADAVIEQAAGCSIPEIFERDGDAGFRS 79
Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
E VL ++S VVAT G G + + W L++G +WL
Sbjct: 80 LESQVLSAISQRHSLVVATGG---GVVTQPENWGLLHSGIVIWL 120
>sp|A9BCW6|AROK_PROM4 Shikimate kinase OS=Prochlorococcus marinus (strain MIT 9211)
GN=aroK PE=3 SV=1
Length = 197
Score = 39.3 bits (90), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 3/105 (2%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
L G +++LVG + LA L Y + +++E Q+I EG
Sbjct: 14 LGGRNLYLVGMMGSGKSRTGPVLAKKLSYGFVDVDDVIEKVTNQSISEIFDQEGEIGFRE 73
Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLS 288
E +L+ + VVAT G G R + W L+ G +W+
Sbjct: 74 IETQILQEIGQRHSLVVATGG---GIVTRPENWGILHQGVVIWID 115
>sp|Q7X7H9|SK3_ORYSJ Shikimate kinase 3, chloroplastic OS=Oryza sativa subsp. japonica
GN=SK3 PE=1 SV=2
Length = 287
Score = 38.5 bits (88), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVV- 242
L I+LVG V LA LGY+ + +L+E + + + S++
Sbjct: 89 LNDRCIYLVGMMGSGKTTVGKILAEVLGYSFFDSDKLVEKAVGISSVAEIFQLHSEAFFR 148
Query: 243 NGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
+ E +VL LSS R VVAT G GA R W ++ G T+WL
Sbjct: 149 DNESEVLRDLSSMHRLVVATGG---GAVIRPINWSYMKKGSTIWL 190
>sp|A5GQN5|AROK_SYNR3 Shikimate kinase OS=Synechococcus sp. (strain RCC307) GN=aroK PE=3
SV=1
Length = 195
Score = 38.1 bits (87), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
L+GT+++LVG V LA LGY L ++ A +I +G +
Sbjct: 14 LQGTNLYLVGMMGSGKSTVGPLLAKALGYRFLDADAVISQAAGCSIPEIFERDGEEGFRQ 73
Query: 244 GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTE 291
E VL+ LS VVAT GG A W L G +WL E
Sbjct: 74 LERQVLQQLSQWHSLVVATGGGIVTVPA---NWGELRQGVVIWLDVAE 118
>sp|Q7U469|AROK_SYNPX Shikimate kinase OS=Synechococcus sp. (strain WH8102) GN=aroK PE=3
SV=1
Length = 191
Score = 38.1 bits (87), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 3/106 (2%)
Query: 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSV 241
Q L G S++LVG LA LGY + ++E A +I +G
Sbjct: 10 QRLGGRSLYLVGMMGSGKTSTGRPLAEQLGYGFVDADAVIEQAAGCSIPEIFERDGEAGF 69
Query: 242 VNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
E VL ++ VVAT G G + + W L++G VWL
Sbjct: 70 RALESQVLNAIGQRHSLVVATGG---GVVTQQENWGLLHSGIVVWL 112
>sp|Q9LW20|SKL1_ARATH Probable inactive shikimate kinase like 1, chloroplastic
OS=Arabidopsis thaliana GN=SKL1 PE=2 SV=1
Length = 280
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 43/105 (40%), Gaps = 4/105 (3%)
Query: 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN 243
LKG SIFLVG + + LA L Y + L+ A + + L E +
Sbjct: 87 LKGASIFLVGINNSIKTNTGKLLAEALRYYYFDSDNLITEAAGGNVSAQALKEADEKAFQ 146
Query: 244 -GECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWL 287
E +VL+ LSS R VV GA L G ++W+
Sbjct: 147 ESETEVLKQLSSMGRLVVC---AGDGAVQSLRNLALLRHGISIWI 188
>sp|Q72DN7|AROK_DESVH Shikimate kinase OS=Desulfovibrio vulgaris (strain Hildenborough /
ATCC 29579 / NCIMB 8303) GN=aroK PE=3 SV=1
Length = 175
Score = 35.8 bits (81), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDV 248
+FL+G V LA LG+ T ++ A I + + G D+ + E D
Sbjct: 8 VFLIGGRASGKSTVGRALAARLGWDFADTDAMVTRRAGCDIATLVAERGWDAFRDMESDA 67
Query: 249 LESLSSHVRAVVATLGGQQGAAARADKWQHLY-AGFTVWLS 288
L ++ R VVAT GG RA+ L AG TV+LS
Sbjct: 68 LRDAAARERVVVATGGGM---VLRAENRALLREAGVTVFLS 105
>sp|Q7VFD7|HTPG_HELHP Chaperone protein HtpG OS=Helicobacter hepaticus (strain ATCC 51449
/ 3B1) GN=htpG PE=3 SV=1
Length = 618
Score = 35.8 bits (81), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 199 NEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN---GECDVLESLSSH 255
NE+ ++ +G L LLE FA++ D +L++ D++V GE D + S +
Sbjct: 424 NEQKSIYYMLGENKDALKNAPLLEKFAQKGFDVLLLSDEIDAIVMPMVGEYDKVPLKSIN 483
Query: 256 VRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMGKL 296
+ +A LG + A + ++ L GF L + A KL
Sbjct: 484 SKEALAELGEESIDEATQNAYEPLIKGFKDALGEQIAEVKL 524
>sp|P10880|AROL_ERWCH Shikimate kinase 2 OS=Erwinia chrysanthemi GN=aroL PE=1 SV=1
Length = 173
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDV 248
IF+VG V ELA LGY + T ++ + T+ + AEG E +
Sbjct: 5 IFMVGARGCGKTTVGRELARALGYEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRESEA 64
Query: 249 LESLSSHVRAVVATLGG 265
L+++++ R VVAT GG
Sbjct: 65 LQAVATPNR-VVATGGG 80
>sp|Q8DUP3|CARB_STRMU Carbamoyl-phosphate synthase large chain OS=Streptococcus mutans
serotype c (strain ATCC 700610 / UA159) GN=carB PE=3 SV=1
Length = 1059
Score = 32.7 bits (73), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 20/123 (16%)
Query: 186 GTSIFLVGDSTEVNEKVALELA---VGLGYTPLSTKELLETFAKQTIDSWM---LAEGSD 239
G IF + D T ++ AL LA +GY+ L+T+ + FA+ +++ + L E D
Sbjct: 936 GNVIFTIADDT---KEEALALARRFSNIGYSILATEGTAKFFAENNLEAVLVNKLGEDDD 992
Query: 240 SVVNGECDVLESLSSHVRAVVATLGGQQ-----GAAARADKWQHLYAGFTVWLSQTEAMG 294
+ + S V+A++ T+G ++ GAA R+ +H FT L +AM
Sbjct: 993 NDIPAYVR-----SGKVQAIINTVGNKRTFDEDGAAIRSSAIEHGVPLFTA-LDTADAMV 1046
Query: 295 KLL 297
++L
Sbjct: 1047 RVL 1049
>sp|Q9NA80|SIN1_CAEEL Stress-activated map kinase-interacting protein 1 homolog
OS=Caenorhabditis elegans GN=sinh-1 PE=3 SV=3
Length = 642
Score = 32.3 bits (72), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 16/97 (16%)
Query: 72 SSIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTV--RVNRSGSFITL 129
S +P Y+F + E+ +L L+ S + TCL + R+ ++G+
Sbjct: 208 SYLPGEVDDYQFYLAEEDGEIEHELPPLD---SSKLVGQVGFTCLGLVSRIKKNGN---- 260
Query: 130 IETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKW 166
+ K +W++D+DQ VI + + L+W
Sbjct: 261 -------SRQKRAVAVWFVDKDQYVIEVDNMEKPLRW 290
>sp|B3EIT1|AROK_CHLL2 Shikimate kinase OS=Chlorobium limicola (strain DSM 245 / NBRC
103803) GN=aroK PE=3 SV=1
Length = 199
Score = 31.6 bits (70), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 34/77 (44%)
Query: 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDV 248
IFL G S + LA LGY + + +E+ A ++I EG + N E +
Sbjct: 7 IFLTGFSGSGKSTIGPLLANSLGYGFIDLDQEIESKAGKSITKIFAEEGEQTFRNLELET 66
Query: 249 LESLSSHVRAVVATLGG 265
L L+ VV+ GG
Sbjct: 67 LRQLTGKKELVVSLGGG 83
>sp|Q5THJ4|VP13D_HUMAN Vacuolar protein sorting-associated protein 13D OS=Homo sapiens
GN=VPS13D PE=1 SV=1
Length = 4387
Score = 31.6 bits (70), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 38 IFKPIFISSSLHKSTNVVPIKTHDRRRFTCSNSLSSIPANTSQYEF 83
+ +P+F S+ L ++ + P+++ R C L +IP SQ ++
Sbjct: 238 VLEPVFASALLKRNCSKKPLRSRHSPRIDCDIQLETIPLKLSQLQY 283
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.129 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,737,294
Number of Sequences: 539616
Number of extensions: 4366367
Number of successful extensions: 12173
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 12125
Number of HSP's gapped (non-prelim): 46
length of query: 345
length of database: 191,569,459
effective HSP length: 118
effective length of query: 227
effective length of database: 127,894,771
effective search space: 29032113017
effective search space used: 29032113017
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)