Query 019172
Match_columns 345
No_of_seqs 201 out of 1467
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 07:17:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019172.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019172hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0703 AroK Shikimate kinase 100.0 6.6E-32 1.4E-36 242.8 12.7 121 186-312 2-123 (172)
2 PLN02199 shikimate kinase 99.9 2.1E-26 4.5E-31 222.7 14.8 129 178-310 94-223 (303)
3 PRK13948 shikimate kinase; Pro 99.9 7.3E-26 1.6E-30 204.4 13.8 110 185-298 9-119 (182)
4 PF01202 SKI: Shikimate kinase 99.9 6.9E-25 1.5E-29 191.3 10.5 101 195-299 1-102 (158)
5 PRK14021 bifunctional shikimat 99.9 1.2E-24 2.5E-29 224.6 13.1 110 185-298 5-119 (542)
6 PRK00625 shikimate kinase; Pro 99.9 2.5E-24 5.5E-29 192.7 12.8 107 187-298 1-112 (173)
7 PRK13949 shikimate kinase; Pro 99.9 1.4E-23 3E-28 186.3 13.5 108 187-298 2-110 (169)
8 PRK13946 shikimate kinase; Pro 99.9 9.2E-23 2E-27 182.0 12.9 113 182-298 6-119 (184)
9 PRK05057 aroK shikimate kinase 99.9 2.2E-22 4.9E-27 178.6 13.5 120 185-310 3-123 (172)
10 PRK03731 aroL shikimate kinase 99.9 5.2E-22 1.1E-26 173.1 12.9 141 187-332 3-163 (171)
11 PRK13947 shikimate kinase; Pro 99.9 7.2E-22 1.6E-26 171.6 13.0 108 187-298 2-110 (171)
12 PRK13951 bifunctional shikimat 99.8 2.6E-20 5.6E-25 190.6 12.8 108 187-298 1-108 (488)
13 PRK00131 aroK shikimate kinase 99.8 9E-20 1.9E-24 156.8 13.1 107 185-294 3-110 (175)
14 cd00464 SK Shikimate kinase (S 99.8 2.1E-19 4.6E-24 152.4 12.8 104 188-294 1-105 (154)
15 PRK08154 anaerobic benzoate ca 99.8 1.9E-18 4.1E-23 166.8 14.2 107 185-294 132-240 (309)
16 COG3265 GntK Gluconate kinase 99.7 6E-18 1.3E-22 149.8 8.6 137 192-338 1-158 (161)
17 KOG3354 Gluconate kinase [Carb 99.7 4.1E-17 9E-22 146.0 8.7 124 186-319 12-158 (191)
18 PRK09169 hypothetical protein; 99.7 2.6E-16 5.7E-21 179.2 11.6 122 182-312 2106-2228(2316)
19 PRK03839 putative kinase; Prov 99.5 4.1E-14 8.8E-19 124.8 8.1 96 187-298 1-96 (180)
20 TIGR01313 therm_gnt_kin carboh 99.4 1E-12 2.2E-17 113.8 10.4 101 189-299 1-111 (163)
21 PRK14530 adenylate kinase; Pro 99.4 4.4E-12 9.5E-17 115.6 12.9 108 185-299 2-123 (215)
22 PRK06217 hypothetical protein; 99.4 1.4E-12 2.9E-17 116.2 9.1 98 187-299 2-101 (183)
23 PRK10078 ribose 1,5-bisphospho 99.3 2.2E-12 4.7E-17 115.1 5.4 109 186-299 2-128 (186)
24 TIGR03575 selen_PSTK_euk L-ser 99.3 2.4E-12 5.2E-17 127.1 5.6 92 189-294 2-115 (340)
25 cd02021 GntK Gluconate kinase 99.3 2.3E-11 5E-16 103.8 10.8 103 189-301 2-117 (150)
26 PRK14532 adenylate kinase; Pro 99.3 2.4E-11 5.2E-16 107.7 10.8 102 187-294 1-120 (188)
27 PRK04182 cytidylate kinase; Pr 99.2 3.4E-11 7.4E-16 104.4 8.8 97 187-294 1-105 (180)
28 PRK05541 adenylylsulfate kinas 99.2 8.9E-11 1.9E-15 103.2 9.5 101 185-298 6-118 (176)
29 PRK05537 bifunctional sulfate 99.1 7.3E-11 1.6E-15 123.4 8.1 103 182-298 388-508 (568)
30 PHA02530 pseT polynucleotide k 99.1 2.2E-10 4.8E-15 108.3 10.6 108 187-301 3-122 (300)
31 PRK08118 topology modulation p 99.1 2E-10 4.3E-15 102.0 8.7 95 187-301 2-98 (167)
32 PRK06547 hypothetical protein; 99.1 5.5E-11 1.2E-15 106.6 4.4 118 185-307 14-143 (172)
33 COG1102 Cmk Cytidylate kinase 99.1 5.7E-10 1.2E-14 100.8 10.2 97 187-294 1-104 (179)
34 PTZ00088 adenylate kinase 1; P 99.1 1.9E-09 4E-14 101.1 12.8 124 184-314 4-142 (229)
35 PRK00279 adk adenylate kinase; 99.1 2.8E-09 6.2E-14 97.1 13.2 125 187-319 1-144 (215)
36 PLN02674 adenylate kinase 99.0 3.4E-09 7.4E-14 100.6 13.6 128 185-319 30-175 (244)
37 PRK09825 idnK D-gluconate kina 99.0 2.4E-09 5.3E-14 95.9 11.8 112 185-306 2-123 (176)
38 TIGR01359 UMP_CMP_kin_fam UMP- 99.0 1.6E-09 3.6E-14 95.1 10.2 100 189-294 2-117 (183)
39 cd01428 ADK Adenylate kinase ( 99.0 2.5E-09 5.4E-14 94.2 10.8 104 188-299 1-122 (194)
40 PRK13975 thymidylate kinase; P 99.0 2E-10 4.3E-15 101.9 3.9 106 186-298 2-130 (196)
41 PRK11545 gntK gluconate kinase 99.0 1.3E-09 2.8E-14 96.2 8.8 105 192-303 1-112 (163)
42 PF13671 AAA_33: AAA domain; P 99.0 9E-10 1.9E-14 92.3 7.4 103 189-298 2-114 (143)
43 cd06494 p23_NUDCD2_like p23-li 99.0 1.4E-09 2.9E-14 89.3 6.8 89 74-169 1-92 (93)
44 PRK03846 adenylylsulfate kinas 99.0 1.1E-08 2.3E-13 92.4 12.8 110 184-298 22-138 (198)
45 PF13207 AAA_17: AAA domain; P 98.9 6.4E-10 1.4E-14 91.1 4.3 99 188-293 1-102 (121)
46 PRK00889 adenylylsulfate kinas 98.9 4.7E-09 1E-13 92.2 10.0 102 185-294 3-113 (175)
47 PRK11860 bifunctional 3-phosph 98.9 8E-10 1.7E-14 117.2 6.1 109 88-224 366-480 (661)
48 cd06495 p23_NUDCD3_like p23-li 98.9 2.8E-09 6E-14 89.0 8.0 91 76-169 2-93 (102)
49 PRK13808 adenylate kinase; Pro 98.9 6.9E-09 1.5E-13 102.5 12.1 102 187-294 1-120 (333)
50 TIGR01360 aden_kin_iso1 adenyl 98.9 7.8E-09 1.7E-13 90.4 11.0 102 186-294 3-120 (188)
51 TIGR01351 adk adenylate kinase 98.9 1.5E-08 3.2E-13 92.1 12.8 121 188-315 1-137 (210)
52 PRK14531 adenylate kinase; Pro 98.9 8.2E-09 1.8E-13 92.1 10.9 38 187-224 3-40 (183)
53 TIGR02173 cyt_kin_arch cytidyl 98.9 5.1E-09 1.1E-13 90.3 8.8 99 187-294 1-105 (171)
54 cd02020 CMPK Cytidine monophos 98.9 3.1E-09 6.7E-14 89.0 6.7 93 189-294 2-96 (147)
55 PRK01184 hypothetical protein; 98.9 1.7E-08 3.7E-13 89.2 11.1 101 187-294 2-117 (184)
56 TIGR03574 selen_PSTK L-seryl-t 98.9 1.4E-08 3.1E-13 94.5 10.1 96 189-294 2-109 (249)
57 TIGR02322 phosphon_PhnN phosph 98.8 6.2E-09 1.4E-13 91.4 6.8 105 187-299 2-128 (179)
58 PLN02165 adenylate isopentenyl 98.8 9E-09 2E-13 101.8 8.6 83 183-265 40-142 (334)
59 PTZ00322 6-phosphofructo-2-kin 98.8 4.6E-10 9.9E-15 119.0 -0.9 102 185-289 214-332 (664)
60 cd06492 p23_mNUDC_like p23-lik 98.8 7.6E-09 1.6E-13 83.6 6.2 84 81-168 1-85 (87)
61 PRK14527 adenylate kinase; Pro 98.8 2.7E-08 5.8E-13 89.0 9.9 41 185-225 5-45 (191)
62 PRK07261 topology modulation p 98.8 1.3E-08 2.8E-13 90.5 7.6 91 187-294 1-92 (171)
63 PRK06762 hypothetical protein; 98.8 2.7E-08 5.9E-13 86.4 9.4 101 186-298 2-112 (166)
64 PRK02496 adk adenylate kinase; 98.8 4.1E-08 8.8E-13 87.0 10.3 102 187-294 2-121 (184)
65 KOG0692 Pentafunctional AROM p 98.8 7.4E-10 1.6E-14 113.2 -1.2 120 81-218 469-595 (595)
66 PRK14733 coaE dephospho-CoA ki 98.7 7.7E-08 1.7E-12 89.0 10.6 150 185-340 5-199 (204)
67 PRK14526 adenylate kinase; Pro 98.7 2.6E-07 5.7E-12 85.5 13.5 120 187-314 1-134 (211)
68 PLN02200 adenylate kinase fami 98.7 6.6E-08 1.4E-12 90.6 9.7 103 186-294 43-159 (234)
69 cd00227 CPT Chloramphenicol (C 98.7 1.3E-07 2.8E-12 83.5 10.5 38 186-223 2-41 (175)
70 PF01583 APS_kinase: Adenylyls 98.7 4.1E-08 8.9E-13 87.7 6.9 102 185-294 1-113 (156)
71 PRK14528 adenylate kinase; Pro 98.7 2.4E-07 5.3E-12 83.3 11.5 39 187-225 2-40 (186)
72 PRK08233 hypothetical protein; 98.6 1.2E-07 2.7E-12 82.4 8.4 105 185-294 2-111 (182)
73 COG0563 Adk Adenylate kinase a 98.6 6.2E-08 1.3E-12 87.6 6.6 39 187-225 1-39 (178)
74 PRK00081 coaE dephospho-CoA ki 98.6 1.8E-07 3.8E-12 84.8 9.3 54 187-241 3-59 (194)
75 PLN02459 probable adenylate ki 98.6 4.2E-07 9E-12 87.3 12.3 121 186-313 29-164 (261)
76 KOG2265 Nuclear distribution p 98.6 7.1E-08 1.5E-12 87.5 6.0 81 73-158 13-93 (179)
77 TIGR00152 dephospho-CoA kinase 98.6 3.5E-07 7.7E-12 81.7 10.4 37 189-225 2-38 (188)
78 PRK04040 adenylate kinase; Pro 98.5 1.3E-06 2.9E-11 79.2 12.0 107 186-294 2-124 (188)
79 PRK14730 coaE dephospho-CoA ki 98.5 1E-06 2.2E-11 80.2 11.0 39 187-225 2-40 (195)
80 TIGR00455 apsK adenylylsulfate 98.5 8.5E-07 1.8E-11 78.7 10.2 102 185-294 17-129 (184)
81 PF00406 ADK: Adenylate kinase 98.5 8.5E-07 1.8E-11 76.3 9.7 98 191-294 1-116 (151)
82 PRK12339 2-phosphoglycerate ki 98.5 6.9E-07 1.5E-11 82.0 9.2 40 185-224 2-41 (197)
83 PRK14529 adenylate kinase; Pro 98.5 1E-06 2.2E-11 82.7 10.5 110 187-303 1-127 (223)
84 cd06493 p23_NUDCD1_like p23_NU 98.5 3.7E-07 8.1E-12 72.7 6.4 83 81-169 1-84 (85)
85 PF04969 CS: CS domain; Inter 98.5 7.5E-07 1.6E-11 67.6 7.7 79 79-159 1-79 (79)
86 cd02027 APSK Adenosine 5'-phos 98.4 9E-07 2E-11 77.0 8.9 101 189-298 2-113 (149)
87 PRK03333 coaE dephospho-CoA ki 98.4 1.3E-07 2.7E-12 95.1 3.7 51 188-239 3-56 (395)
88 cd06468 p23_CacyBP p23_like do 98.4 9.1E-07 2E-11 70.7 7.7 90 79-169 2-91 (92)
89 PLN02422 dephospho-CoA kinase 98.4 2.6E-06 5.7E-11 80.4 11.4 53 188-241 3-58 (232)
90 cd06467 p23_NUDC_like p23_like 98.4 8.1E-07 1.7E-11 69.6 6.6 83 81-169 1-84 (85)
91 PRK08356 hypothetical protein; 98.4 2.6E-06 5.6E-11 76.8 9.9 35 186-221 5-39 (195)
92 TIGR00017 cmk cytidylate kinas 98.4 1.3E-06 2.8E-11 81.2 8.1 37 187-223 3-39 (217)
93 PRK00023 cmk cytidylate kinase 98.3 2.2E-06 4.8E-11 79.8 9.3 39 185-223 3-41 (225)
94 PRK14734 coaE dephospho-CoA ki 98.3 4.2E-06 9.1E-11 76.5 10.4 37 188-225 3-39 (200)
95 cd02023 UMPK Uridine monophosp 98.3 2.8E-06 6.1E-11 76.1 8.7 35 189-223 2-39 (198)
96 PLN02842 nucleotide kinase 98.3 5.1E-06 1.1E-10 86.4 11.7 119 190-316 1-135 (505)
97 cd02022 DPCK Dephospho-coenzym 98.3 7.1E-07 1.5E-11 79.5 4.6 36 189-225 2-37 (179)
98 PRK05506 bifunctional sulfate 98.3 1.7E-06 3.8E-11 91.4 7.8 101 185-294 459-571 (632)
99 TIGR00390 hslU ATP-dependent p 98.3 8E-07 1.7E-11 90.7 5.0 63 184-246 45-110 (441)
100 PRK13477 bifunctional pantoate 98.3 1.7E-06 3.6E-11 90.1 7.3 40 185-224 283-322 (512)
101 TIGR00041 DTMP_kinase thymidyl 98.2 8.2E-06 1.8E-10 72.3 9.8 28 185-212 2-29 (195)
102 PRK05480 uridine/cytidine kina 98.2 5.7E-06 1.2E-10 74.8 8.8 39 185-223 5-46 (209)
103 PTZ00451 dephospho-CoA kinase; 98.2 1.2E-05 2.5E-10 76.6 11.1 38 188-225 3-40 (244)
104 KOG3347 Predicted nucleotide k 98.1 7.3E-06 1.6E-10 73.8 7.7 100 184-298 5-109 (176)
105 cd01672 TMPK Thymidine monopho 98.1 1.5E-05 3.2E-10 69.6 9.4 30 188-217 2-34 (200)
106 PRK14732 coaE dephospho-CoA ki 98.1 1.5E-05 3.4E-10 72.8 9.2 36 189-225 2-37 (196)
107 COG0529 CysC Adenylylsulfate k 98.1 1.2E-05 2.7E-10 73.9 7.9 106 183-294 20-134 (197)
108 COG0237 CoaE Dephospho-CoA kin 98.1 5.3E-06 1.2E-10 76.8 5.5 38 187-225 3-40 (201)
109 TIGR01663 PNK-3'Pase polynucle 98.1 2.5E-05 5.5E-10 81.7 11.1 85 186-294 369-461 (526)
110 PRK14731 coaE dephospho-CoA ki 98.0 5.1E-05 1.1E-09 69.5 11.4 37 187-224 6-42 (208)
111 PF06414 Zeta_toxin: Zeta toxi 98.0 4.6E-05 1E-09 68.9 9.2 37 185-221 14-53 (199)
112 PF13189 Cytidylate_kin2: Cyti 97.9 1.7E-05 3.7E-10 71.1 6.0 93 189-292 2-125 (179)
113 PLN02840 tRNA dimethylallyltra 97.9 2.6E-05 5.7E-10 79.6 7.9 83 182-264 17-118 (421)
114 PRK00091 miaA tRNA delta(2)-is 97.9 3.6E-05 7.8E-10 75.4 8.5 79 186-264 4-101 (307)
115 PRK05201 hslU ATP-dependent pr 97.9 1.5E-05 3.3E-10 81.6 6.0 57 185-241 49-108 (443)
116 COG0645 Predicted kinase [Gene 97.9 6.5E-05 1.4E-09 68.3 9.4 102 188-298 3-120 (170)
117 TIGR00235 udk uridine kinase. 97.9 6.1E-05 1.3E-09 68.4 9.3 38 185-222 5-45 (207)
118 PRK09270 nucleoside triphospha 97.9 3.7E-05 8E-10 71.1 7.9 103 185-294 32-174 (229)
119 PF00004 AAA: ATPase family as 97.9 1.1E-05 2.5E-10 65.7 3.8 31 189-219 1-31 (132)
120 PLN02748 tRNA dimethylallyltra 97.9 3.8E-05 8.3E-10 79.3 8.1 80 185-264 21-119 (468)
121 PRK13973 thymidylate kinase; P 97.9 0.00015 3.2E-09 66.6 11.1 33 185-217 2-37 (213)
122 cd02019 NK Nucleoside/nucleoti 97.9 4.2E-05 9.1E-10 58.5 6.3 29 189-217 2-33 (69)
123 PF01121 CoaE: Dephospho-CoA k 97.9 9.9E-06 2.2E-10 73.5 3.2 38 187-225 1-38 (180)
124 cd06463 p23_like Proteins cont 97.9 4.6E-05 9.9E-10 58.0 6.4 83 83-169 1-83 (84)
125 PRK06696 uridine kinase; Valid 97.9 4.7E-05 1E-09 70.1 7.6 36 186-221 22-62 (223)
126 cd02028 UMPK_like Uridine mono 97.8 5.5E-05 1.2E-09 67.9 7.7 34 189-222 2-40 (179)
127 PRK12338 hypothetical protein; 97.8 0.00015 3.3E-09 71.6 11.4 42 185-226 3-45 (319)
128 cd02024 NRK1 Nicotinamide ribo 97.8 7.7E-05 1.7E-09 68.3 8.5 35 189-223 2-37 (187)
129 PRK00698 tmk thymidylate kinas 97.8 0.00016 3.5E-09 64.2 10.2 26 185-210 2-27 (205)
130 TIGR00174 miaA tRNA isopenteny 97.8 6.2E-05 1.3E-09 73.3 8.0 76 189-264 2-96 (287)
131 PRK07667 uridine kinase; Provi 97.8 0.00011 2.5E-09 66.3 9.1 38 187-224 18-60 (193)
132 cd06465 p23_hB-ind1_like p23_l 97.8 8.9E-05 1.9E-09 61.3 7.6 85 80-170 2-87 (108)
133 COG0283 Cmk Cytidylate kinase 97.8 4.4E-05 9.6E-10 71.9 6.0 38 187-224 5-42 (222)
134 PRK00300 gmk guanylate kinase; 97.7 9.2E-05 2E-09 66.3 7.2 27 185-211 4-30 (205)
135 PF08433 KTI12: Chromatin asso 97.7 0.00019 4.2E-09 69.1 9.7 97 188-294 3-112 (270)
136 PRK06761 hypothetical protein; 97.7 0.00018 3.9E-09 70.0 9.3 35 186-220 3-37 (282)
137 PRK05416 glmZ(sRNA)-inactivati 97.7 0.00011 2.4E-09 71.5 7.7 32 187-219 7-38 (288)
138 COG4639 Predicted kinase [Gene 97.7 0.00024 5.1E-09 64.3 9.1 99 188-294 4-110 (168)
139 PF00485 PRK: Phosphoribulokin 97.7 9.3E-05 2E-09 66.5 6.5 33 189-221 2-43 (194)
140 TIGR03263 guanyl_kin guanylate 97.6 0.0001 2.2E-09 64.6 5.8 27 186-212 1-27 (180)
141 cd00071 GMPK Guanosine monopho 97.6 0.00013 2.8E-09 62.8 6.3 24 189-212 2-25 (137)
142 PF13238 AAA_18: AAA domain; P 97.6 5E-05 1.1E-09 61.7 3.4 22 189-210 1-22 (129)
143 COG2019 AdkA Archaeal adenylat 97.6 0.00054 1.2E-08 62.9 10.3 109 187-298 5-127 (189)
144 COG1936 Predicted nucleotide k 97.6 6.2E-05 1.3E-09 68.9 4.1 37 187-224 1-37 (180)
145 PRK09518 bifunctional cytidyla 97.6 5.9E-05 1.3E-09 81.1 4.3 37 188-224 3-39 (712)
146 PRK12337 2-phosphoglycerate ki 97.6 0.00051 1.1E-08 71.2 10.8 43 185-227 254-297 (475)
147 cd01673 dNK Deoxyribonucleosid 97.5 0.00057 1.2E-08 60.7 9.6 30 189-218 2-31 (193)
148 COG0572 Udk Uridine kinase [Nu 97.5 0.00052 1.1E-08 64.7 9.7 112 188-307 10-153 (218)
149 PRK14738 gmk guanylate kinase; 97.5 0.00016 3.5E-09 66.1 5.8 29 185-214 12-40 (206)
150 PRK12269 bifunctional cytidyla 97.5 0.00011 2.3E-09 81.0 5.3 43 183-225 31-73 (863)
151 PLN02772 guanylate kinase 97.5 0.00084 1.8E-08 68.3 10.9 113 87-210 30-159 (398)
152 smart00382 AAA ATPases associa 97.5 0.00014 3.1E-09 57.5 4.2 28 186-213 2-29 (148)
153 KOG1384 tRNA delta(2)-isopente 97.4 0.00063 1.4E-08 67.7 9.1 103 185-294 6-151 (348)
154 PTZ00301 uridine kinase; Provi 97.4 0.00056 1.2E-08 63.5 8.2 36 187-222 4-46 (210)
155 PF07728 AAA_5: AAA domain (dy 97.4 0.00015 3.3E-09 61.0 4.0 29 188-216 1-29 (139)
156 PRK09087 hypothetical protein; 97.4 0.00017 3.7E-09 67.3 4.7 139 187-330 45-193 (226)
157 KOG0733 Nuclear AAA ATPase (VC 97.4 0.00067 1.4E-08 72.3 9.5 104 185-293 222-364 (802)
158 PRK06893 DNA replication initi 97.3 0.0011 2.4E-08 61.5 9.3 107 186-292 39-163 (229)
159 PRK14729 miaA tRNA delta(2)-is 97.3 0.00074 1.6E-08 66.3 8.4 77 187-264 5-100 (300)
160 cd06466 p23_CS_SGT1_like p23_l 97.3 0.00052 1.1E-08 53.3 6.0 83 82-169 1-83 (84)
161 PRK14737 gmk guanylate kinase; 97.3 0.00069 1.5E-08 61.5 7.6 26 185-210 3-28 (186)
162 PF07931 CPT: Chloramphenicol 97.3 0.0019 4.1E-08 58.7 10.3 38 186-223 1-40 (174)
163 COG4088 Predicted nucleotide k 97.3 0.00071 1.5E-08 64.2 7.6 24 188-211 3-26 (261)
164 cd02030 NDUO42 NADH:Ubiquinone 97.3 0.002 4.4E-08 59.3 10.5 29 189-217 2-30 (219)
165 TIGR00150 HI0065_YjeE ATPase, 97.3 0.00044 9.5E-09 60.4 5.7 39 175-213 10-49 (133)
166 PLN02348 phosphoribulokinase 97.3 0.00049 1.1E-08 69.9 6.8 35 187-221 50-104 (395)
167 PRK13974 thymidylate kinase; P 97.3 0.0011 2.4E-08 60.7 8.6 27 185-211 2-28 (212)
168 PHA00729 NTP-binding motif con 97.2 0.00028 6.1E-09 66.7 4.0 26 187-212 18-43 (226)
169 TIGR01650 PD_CobS cobaltochela 97.2 0.0004 8.7E-09 68.9 5.2 33 183-215 61-93 (327)
170 PRK04220 2-phosphoglycerate ki 97.2 0.0006 1.3E-08 67.0 6.3 40 185-224 91-131 (301)
171 PRK06620 hypothetical protein; 97.2 0.0011 2.4E-08 61.4 7.7 100 187-293 45-150 (214)
172 PRK08084 DNA replication initi 97.2 0.0021 4.5E-08 60.1 9.5 108 185-292 44-169 (235)
173 TIGR02640 gas_vesic_GvpN gas v 97.2 0.00054 1.2E-08 64.9 5.6 32 185-216 20-51 (262)
174 smart00072 GuKc Guanylate kina 97.2 0.00075 1.6E-08 60.3 6.2 25 186-210 2-26 (184)
175 cd00009 AAA The AAA+ (ATPases 97.2 0.00051 1.1E-08 55.2 4.5 35 185-219 18-55 (151)
176 PF13521 AAA_28: AAA domain; P 97.2 0.0006 1.3E-08 59.2 5.1 34 188-224 1-34 (163)
177 PRK05342 clpX ATP-dependent pr 97.2 0.0004 8.6E-09 70.7 4.5 36 184-219 106-141 (412)
178 COG0324 MiaA tRNA delta(2)-iso 97.2 0.0015 3.3E-08 64.5 8.3 79 186-264 3-100 (308)
179 TIGR01526 nadR_NMN_Atrans nico 97.2 0.0018 4E-08 63.7 8.9 46 171-217 148-193 (325)
180 KOG3079 Uridylate kinase/adeny 97.2 0.0048 1E-07 57.2 11.0 103 185-294 7-126 (195)
181 PRK08099 bifunctional DNA-bind 97.1 0.00058 1.3E-08 69.2 5.4 47 169-216 203-249 (399)
182 PF13173 AAA_14: AAA domain 97.1 0.00055 1.2E-08 57.6 4.3 37 186-222 2-42 (128)
183 PRK15453 phosphoribulokinase; 97.1 0.00048 1.1E-08 67.4 3.8 38 185-222 4-46 (290)
184 KOG3220 Similar to bacterial d 97.0 0.0044 9.5E-08 58.4 9.3 36 189-225 4-39 (225)
185 COG0194 Gmk Guanylate kinase [ 97.0 0.0014 3E-08 60.8 5.9 27 185-211 3-29 (191)
186 TIGR01241 FtsH_fam ATP-depende 97.0 0.0019 4.2E-08 66.5 7.4 35 185-219 87-121 (495)
187 cd02034 CooC The accessory pro 97.0 0.0021 4.6E-08 54.3 6.3 32 188-219 1-37 (116)
188 PHA02244 ATPase-like protein 96.9 0.0013 2.8E-08 66.7 5.7 37 185-221 118-154 (383)
189 COG1219 ClpX ATP-dependent pro 96.9 0.00084 1.8E-08 67.1 4.0 36 184-219 95-130 (408)
190 PF01591 6PF2K: 6-phosphofruct 96.9 0.0082 1.8E-07 56.6 10.4 99 186-289 12-130 (222)
191 PRK08903 DnaA regulatory inact 96.9 0.0056 1.2E-07 55.9 9.1 39 185-223 41-84 (227)
192 TIGR00382 clpX endopeptidase C 96.9 0.001 2.2E-08 68.0 4.5 34 185-218 115-148 (413)
193 KOG0635 Adenosine 5'-phosphosu 96.9 0.0033 7.2E-08 57.3 7.3 103 185-294 30-142 (207)
194 TIGR03420 DnaA_homol_Hda DnaA 96.9 0.0032 7E-08 56.8 7.3 37 185-221 37-78 (226)
195 cd03115 SRP The signal recogni 96.9 0.0054 1.2E-07 53.7 8.4 33 188-220 2-39 (173)
196 cd02025 PanK Pantothenate kina 96.9 0.0013 2.9E-08 61.1 4.8 33 189-221 2-41 (220)
197 PF05496 RuvB_N: Holliday junc 96.9 0.001 2.2E-08 63.3 4.0 31 187-217 51-81 (233)
198 PRK05800 cobU adenosylcobinami 96.8 0.00091 2E-08 60.0 3.4 33 187-219 2-36 (170)
199 COG1428 Deoxynucleoside kinase 96.8 0.0011 2.4E-08 62.4 3.8 40 186-225 4-47 (216)
200 PF02367 UPF0079: Uncharacteri 96.8 0.0017 3.6E-08 56.1 4.6 29 185-213 14-42 (123)
201 CHL00195 ycf46 Ycf46; Provisio 96.8 0.0012 2.6E-08 68.7 4.3 35 185-219 258-292 (489)
202 PLN02924 thymidylate kinase 96.8 0.0049 1.1E-07 57.6 7.6 30 184-213 14-43 (220)
203 CHL00181 cbbX CbbX; Provisiona 96.7 0.0015 3.3E-08 63.2 4.0 42 185-226 58-108 (287)
204 PRK03992 proteasome-activating 96.7 0.0016 3.5E-08 65.3 4.2 34 185-218 164-197 (389)
205 TIGR02880 cbbX_cfxQ probable R 96.7 0.0016 3.4E-08 62.8 4.0 41 186-226 58-107 (284)
206 KOG1970 Checkpoint RAD17-RFC c 96.7 0.0017 3.6E-08 68.5 4.4 74 131-217 68-141 (634)
207 CHL00176 ftsH cell division pr 96.7 0.0093 2E-07 64.0 10.0 33 186-218 216-248 (638)
208 PRK10646 ADP-binding protein; 96.6 0.0037 7.9E-08 56.0 5.7 39 174-212 15-54 (153)
209 cd02029 PRK_like Phosphoribulo 96.6 0.0013 2.8E-08 64.0 3.0 34 189-222 2-40 (277)
210 PF07724 AAA_2: AAA domain (Cd 96.6 0.0019 4.1E-08 58.1 3.8 26 187-212 4-29 (171)
211 PRK10416 signal recognition pa 96.6 0.0097 2.1E-07 58.6 9.2 36 185-220 113-153 (318)
212 KOG0730 AAA+-type ATPase [Post 96.6 0.0032 6.9E-08 67.5 6.0 44 185-228 467-512 (693)
213 cd06469 p23_DYX1C1_like p23_li 96.6 0.0056 1.2E-07 47.0 5.9 76 83-168 1-76 (78)
214 cd06489 p23_CS_hSgt1_like p23_ 96.6 0.006 1.3E-07 48.1 6.0 83 82-169 1-83 (84)
215 PF00308 Bac_DnaA: Bacterial d 96.6 0.014 2.9E-07 54.3 9.2 143 187-330 35-206 (219)
216 PRK04195 replication factor C 96.6 0.0038 8.2E-08 64.2 6.1 33 186-218 39-71 (482)
217 TIGR01242 26Sp45 26S proteasom 96.6 0.0025 5.4E-08 63.0 4.6 34 185-218 155-188 (364)
218 COG1220 HslU ATP-dependent pro 96.6 0.0064 1.4E-07 61.4 7.4 47 171-217 33-81 (444)
219 TIGR02881 spore_V_K stage V sp 96.6 0.0018 4E-08 60.9 3.5 26 185-210 41-66 (261)
220 TIGR03015 pepcterm_ATPase puta 96.6 0.0066 1.4E-07 56.3 7.0 26 186-211 43-68 (269)
221 COG2256 MGS1 ATPase related to 96.5 0.0059 1.3E-07 62.4 6.8 34 187-220 49-82 (436)
222 TIGR00635 ruvB Holliday juncti 96.5 0.01 2.2E-07 56.5 8.0 31 186-216 30-60 (305)
223 PRK07429 phosphoribulokinase; 96.5 0.0021 4.6E-08 63.6 3.5 36 186-221 8-46 (327)
224 PF03215 Rad17: Rad17 cell cyc 96.5 0.0039 8.4E-08 65.4 5.5 31 186-216 45-75 (519)
225 TIGR01243 CDC48 AAA family ATP 96.5 0.0053 1.1E-07 66.3 6.7 34 185-218 486-519 (733)
226 PF00625 Guanylate_kin: Guanyl 96.5 0.0033 7.2E-08 55.9 4.3 27 185-211 1-27 (183)
227 cd02026 PRK Phosphoribulokinas 96.5 0.0024 5.1E-08 61.5 3.5 33 189-221 2-37 (273)
228 PRK13342 recombination factor 96.4 0.0084 1.8E-07 60.4 7.5 35 185-219 35-69 (413)
229 TIGR03499 FlhF flagellar biosy 96.4 0.0084 1.8E-07 57.7 7.2 35 186-220 194-235 (282)
230 PF07726 AAA_3: ATPase family 96.4 0.0024 5.2E-08 56.0 3.0 41 188-228 1-45 (131)
231 TIGR03167 tRNA_sel_U_synt tRNA 96.4 0.023 5E-07 56.0 10.2 103 188-292 129-234 (311)
232 PRK05439 pantothenate kinase; 96.4 0.0052 1.1E-07 60.7 5.6 35 187-221 87-128 (311)
233 cd01983 Fer4_NifH The Fer4_Nif 96.4 0.021 4.6E-07 43.3 7.9 30 189-218 2-34 (99)
234 PTZ00454 26S protease regulato 96.4 0.0034 7.3E-08 63.7 4.4 34 185-218 178-211 (398)
235 COG0714 MoxR-like ATPases [Gen 96.4 0.0048 1E-07 60.1 5.2 36 182-217 39-74 (329)
236 PRK14086 dnaA chromosomal repl 96.4 0.013 2.7E-07 62.9 8.6 105 188-292 316-448 (617)
237 PRK11784 tRNA 2-selenouridine 96.4 0.036 7.9E-07 55.4 11.3 104 187-292 142-247 (345)
238 COG0466 Lon ATP-dependent Lon 96.3 0.0035 7.5E-08 67.9 4.2 36 182-217 346-381 (782)
239 cd00820 PEPCK_HprK Phosphoenol 96.3 0.0041 8.8E-08 52.6 3.7 36 185-222 14-49 (107)
240 PRK11331 5-methylcytosine-spec 96.3 0.0052 1.1E-07 63.7 5.1 129 78-212 64-220 (459)
241 TIGR03689 pup_AAA proteasome A 96.3 0.0037 7.9E-08 65.6 4.1 29 185-213 215-243 (512)
242 PF00448 SRP54: SRP54-type pro 96.2 0.0082 1.8E-07 55.1 5.6 34 187-220 2-40 (196)
243 TIGR00064 ftsY signal recognit 96.2 0.037 8.1E-07 53.3 10.3 35 186-220 72-111 (272)
244 PRK00771 signal recognition pa 96.2 0.015 3.3E-07 59.9 8.0 36 185-220 94-134 (437)
245 PTZ00361 26 proteosome regulat 96.2 0.0049 1.1E-07 63.4 4.4 34 185-218 216-249 (438)
246 smart00763 AAA_PrkA PrkA AAA d 96.2 0.0045 9.8E-08 62.4 4.0 27 186-212 78-104 (361)
247 COG0464 SpoVK ATPases of the A 96.2 0.014 3E-07 59.8 7.5 35 186-220 276-310 (494)
248 PRK13695 putative NTPase; Prov 96.2 0.0063 1.4E-07 53.6 4.3 28 187-214 1-31 (174)
249 PF13191 AAA_16: AAA ATPase do 96.1 0.0069 1.5E-07 52.3 4.4 30 184-213 22-51 (185)
250 TIGR02639 ClpA ATP-dependent C 96.1 0.014 3.1E-07 63.1 7.7 34 185-218 202-245 (731)
251 TIGR01425 SRP54_euk signal rec 96.1 0.021 4.5E-07 58.8 8.4 35 186-220 100-139 (429)
252 COG1618 Predicted nucleotide k 96.1 0.005 1.1E-07 56.3 3.4 26 186-211 5-30 (179)
253 PF03266 NTPase_1: NTPase; In 96.1 0.0055 1.2E-07 54.9 3.6 23 188-210 1-23 (168)
254 PF01695 IstB_IS21: IstB-like 96.1 0.0088 1.9E-07 53.9 4.9 41 185-225 46-91 (178)
255 PRK00080 ruvB Holliday junctio 96.1 0.0087 1.9E-07 58.2 5.2 31 186-216 51-81 (328)
256 COG0802 Predicted ATPase or ki 96.1 0.0095 2.1E-07 53.3 5.0 36 177-212 15-51 (149)
257 PRK08727 hypothetical protein; 96.1 0.025 5.5E-07 52.7 8.0 35 187-221 42-81 (233)
258 PRK05703 flhF flagellar biosyn 96.0 0.023 4.9E-07 58.2 8.2 35 186-220 221-262 (424)
259 PRK09183 transposase/IS protei 96.0 0.0076 1.6E-07 57.4 4.4 39 185-223 101-144 (259)
260 PRK08181 transposase; Validate 96.0 0.018 3.9E-07 55.6 7.0 40 185-224 105-149 (269)
261 PF05729 NACHT: NACHT domain 96.0 0.0065 1.4E-07 51.1 3.5 27 188-214 2-28 (166)
262 PF00910 RNA_helicase: RNA hel 96.0 0.0052 1.1E-07 50.6 2.8 23 189-211 1-23 (107)
263 PRK11034 clpA ATP-dependent Cl 96.0 0.0061 1.3E-07 66.6 4.1 31 188-218 490-520 (758)
264 PRK12724 flagellar biosynthesi 96.0 0.012 2.7E-07 60.5 6.0 35 186-220 223-263 (432)
265 PF13401 AAA_22: AAA domain; P 96.0 0.0064 1.4E-07 49.9 3.2 25 186-210 4-28 (131)
266 PRK06526 transposase; Provisio 96.0 0.026 5.5E-07 53.9 7.8 40 185-224 97-141 (254)
267 cd03112 CobW_like The function 96.0 0.022 4.7E-07 50.1 6.8 21 189-209 3-23 (158)
268 KOG2004 Mitochondrial ATP-depe 96.0 0.0058 1.2E-07 66.4 3.6 35 183-217 435-469 (906)
269 PRK14956 DNA polymerase III su 96.0 0.035 7.5E-07 58.0 9.2 28 186-213 40-67 (484)
270 PRK10733 hflB ATP-dependent me 95.9 0.015 3.3E-07 62.3 6.7 34 186-219 185-218 (644)
271 TIGR00763 lon ATP-dependent pr 95.9 0.0071 1.5E-07 65.9 4.3 33 185-217 346-378 (775)
272 cd01918 HprK_C HprK/P, the bif 95.9 0.0095 2.1E-07 53.1 4.3 35 184-219 12-46 (149)
273 cd03114 ArgK-like The function 95.9 0.038 8.1E-07 48.4 8.0 30 189-218 2-36 (148)
274 KOG0745 Putative ATP-dependent 95.9 0.0074 1.6E-07 62.5 3.9 37 183-219 223-259 (564)
275 PRK13894 conjugal transfer ATP 95.9 0.012 2.7E-07 58.0 5.4 26 185-210 147-172 (319)
276 TIGR00959 ffh signal recogniti 95.9 0.034 7.5E-07 57.1 8.7 35 186-220 99-139 (428)
277 PRK00149 dnaA chromosomal repl 95.9 0.035 7.5E-07 56.6 8.7 37 187-223 149-192 (450)
278 PF06068 TIP49: TIP49 C-termin 95.9 0.0088 1.9E-07 60.8 4.3 38 182-219 46-85 (398)
279 TIGR01243 CDC48 AAA family ATP 95.9 0.0075 1.6E-07 65.2 4.1 34 185-218 211-244 (733)
280 PHA02575 1 deoxynucleoside mon 95.9 0.012 2.7E-07 55.8 5.1 37 187-224 1-38 (227)
281 PLN00020 ribulose bisphosphate 95.9 0.021 4.5E-07 58.4 6.9 34 186-219 148-181 (413)
282 PF00005 ABC_tran: ABC transpo 95.8 0.0075 1.6E-07 50.2 3.1 27 185-211 10-36 (137)
283 TIGR00554 panK_bact pantothena 95.8 0.0072 1.6E-07 59.0 3.5 36 186-221 62-104 (290)
284 cd00237 p23 p23 binds heat sho 95.8 0.046 1E-06 45.9 7.8 87 79-171 2-88 (106)
285 PRK12726 flagellar biosynthesi 95.8 0.04 8.7E-07 56.4 8.8 36 185-220 205-245 (407)
286 KOG3078 Adenylate kinase [Nucl 95.8 0.021 4.5E-07 54.6 6.2 121 185-313 14-149 (235)
287 cd04177 RSR1 RSR1 subgroup. R 95.8 0.0071 1.5E-07 52.0 2.8 62 187-250 2-71 (168)
288 PRK14962 DNA polymerase III su 95.8 0.013 2.9E-07 60.7 5.3 27 186-212 36-62 (472)
289 PRK12723 flagellar biosynthesi 95.8 0.038 8.2E-07 56.1 8.3 36 185-220 173-217 (388)
290 TIGR00960 3a0501s02 Type II (G 95.7 0.0091 2E-07 54.1 3.4 26 185-210 28-53 (216)
291 PRK14722 flhF flagellar biosyn 95.7 0.022 4.7E-07 57.7 6.4 36 185-220 136-178 (374)
292 COG1124 DppF ABC-type dipeptid 95.7 0.0088 1.9E-07 57.5 3.4 37 184-220 31-71 (252)
293 PHA02544 44 clamp loader, smal 95.7 0.016 3.4E-07 55.4 5.2 30 188-217 45-74 (316)
294 TIGR01166 cbiO cobalt transpor 95.7 0.0096 2.1E-07 52.9 3.4 26 185-210 17-42 (190)
295 cd01120 RecA-like_NTPases RecA 95.7 0.0099 2.2E-07 49.4 3.3 34 189-222 2-40 (165)
296 PRK06995 flhF flagellar biosyn 95.7 0.02 4.4E-07 59.7 6.3 36 185-220 255-297 (484)
297 cd06488 p23_melusin_like p23_l 95.7 0.047 1E-06 43.7 7.1 85 80-169 2-86 (87)
298 KOG0739 AAA+-type ATPase [Post 95.7 0.069 1.5E-06 53.6 9.5 104 187-292 167-301 (439)
299 PF08303 tRNA_lig_kinase: tRNA 95.7 0.0087 1.9E-07 54.5 3.1 32 189-220 2-34 (168)
300 KOG0731 AAA+-type ATPase conta 95.7 0.013 2.7E-07 64.1 4.9 41 186-226 344-386 (774)
301 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.7 0.0099 2.2E-07 53.8 3.5 26 185-210 29-54 (218)
302 TIGR02639 ClpA ATP-dependent C 95.7 0.011 2.5E-07 63.9 4.4 35 188-222 486-522 (731)
303 cd03225 ABC_cobalt_CbiO_domain 95.7 0.01 2.2E-07 53.5 3.4 26 185-210 26-51 (211)
304 PF10662 PduV-EutP: Ethanolami 95.7 0.009 1.9E-07 53.0 3.0 22 187-208 2-23 (143)
305 PF01745 IPT: Isopentenyl tran 95.7 0.0095 2.1E-07 56.6 3.3 33 188-220 3-35 (233)
306 cd03269 ABC_putative_ATPase Th 95.7 0.01 2.2E-07 53.5 3.5 26 185-210 25-50 (210)
307 cd03261 ABC_Org_Solvent_Resist 95.7 0.01 2.2E-07 54.6 3.5 26 185-210 25-50 (235)
308 PRK14961 DNA polymerase III su 95.7 0.015 3.3E-07 57.7 5.0 28 186-213 38-65 (363)
309 cd03292 ABC_FtsE_transporter F 95.6 0.01 2.3E-07 53.4 3.5 26 185-210 26-51 (214)
310 cd01130 VirB11-like_ATPase Typ 95.6 0.012 2.5E-07 52.8 3.8 27 185-211 24-50 (186)
311 TIGR02673 FtsE cell division A 95.6 0.011 2.3E-07 53.4 3.5 26 185-210 27-52 (214)
312 cd03259 ABC_Carb_Solutes_like 95.6 0.011 2.3E-07 53.5 3.5 26 185-210 25-50 (213)
313 PRK05642 DNA replication initi 95.6 0.034 7.4E-07 52.0 6.9 106 187-292 46-168 (234)
314 TIGR01618 phage_P_loop phage n 95.6 0.019 4.1E-07 54.1 5.2 33 186-220 12-44 (220)
315 COG1222 RPT1 ATP-dependent 26S 95.6 0.017 3.6E-07 58.6 5.0 43 185-227 184-228 (406)
316 PRK14974 cell division protein 95.6 0.077 1.7E-06 52.9 9.7 35 186-220 140-179 (336)
317 TIGR00362 DnaA chromosomal rep 95.6 0.059 1.3E-06 54.0 8.9 37 187-223 137-180 (405)
318 PRK06835 DNA replication prote 95.6 0.042 9E-07 54.6 7.6 40 186-225 183-227 (329)
319 KOG0733 Nuclear AAA ATPase (VC 95.6 0.03 6.4E-07 60.2 6.9 42 186-227 545-588 (802)
320 cd03262 ABC_HisP_GlnQ_permease 95.5 0.012 2.6E-07 53.0 3.5 26 185-210 25-50 (213)
321 cd03256 ABC_PhnC_transporter A 95.5 0.012 2.5E-07 54.0 3.5 27 184-210 25-51 (241)
322 cd03219 ABC_Mj1267_LivG_branch 95.5 0.011 2.4E-07 54.2 3.2 26 185-210 25-50 (236)
323 cd03235 ABC_Metallic_Cations A 95.5 0.011 2.4E-07 53.4 3.2 26 185-210 24-49 (213)
324 cd03260 ABC_PstB_phosphate_tra 95.5 0.012 2.7E-07 53.6 3.5 26 185-210 25-50 (227)
325 cd03224 ABC_TM1139_LivF_branch 95.5 0.011 2.5E-07 53.4 3.3 26 185-210 25-50 (222)
326 cd03265 ABC_DrrA DrrA is the A 95.5 0.013 2.7E-07 53.4 3.5 26 185-210 25-50 (220)
327 cd03293 ABC_NrtD_SsuB_transpor 95.5 0.012 2.7E-07 53.5 3.5 26 185-210 29-54 (220)
328 TIGR02315 ABC_phnC phosphonate 95.5 0.012 2.7E-07 54.0 3.5 27 184-210 26-52 (243)
329 TIGR02211 LolD_lipo_ex lipopro 95.5 0.013 2.8E-07 53.2 3.5 26 185-210 30-55 (221)
330 TIGR03608 L_ocin_972_ABC putat 95.5 0.013 2.8E-07 52.5 3.5 26 185-210 23-48 (206)
331 cd03258 ABC_MetN_methionine_tr 95.5 0.013 2.8E-07 53.7 3.5 26 185-210 30-55 (233)
332 COG2074 2-phosphoglycerate kin 95.5 0.025 5.5E-07 55.1 5.6 49 170-222 77-126 (299)
333 cd03301 ABC_MalK_N The N-termi 95.5 0.013 2.9E-07 52.8 3.5 26 185-210 25-50 (213)
334 PRK00411 cdc6 cell division co 95.5 0.037 8E-07 54.4 6.9 26 185-210 54-79 (394)
335 cd03263 ABC_subfamily_A The AB 95.4 0.013 2.9E-07 53.0 3.5 26 185-210 27-52 (220)
336 PRK10787 DNA-binding ATP-depen 95.4 0.015 3.3E-07 63.8 4.5 33 185-217 348-380 (784)
337 cd03226 ABC_cobalt_CbiO_domain 95.4 0.013 2.9E-07 52.6 3.4 26 185-210 25-50 (205)
338 PRK12377 putative replication 95.4 0.065 1.4E-06 51.2 8.2 39 186-224 101-144 (248)
339 TIGR01978 sufC FeS assembly AT 95.4 0.013 2.9E-07 53.7 3.4 27 184-210 24-50 (243)
340 cd03230 ABC_DR_subfamily_A Thi 95.4 0.014 3.1E-07 51.4 3.5 26 185-210 25-50 (173)
341 PRK12402 replication factor C 95.4 0.015 3.3E-07 55.5 3.9 24 188-211 38-61 (337)
342 TIGR03410 urea_trans_UrtE urea 95.4 0.014 2.9E-07 53.4 3.4 26 185-210 25-50 (230)
343 PRK10584 putative ABC transpor 95.4 0.014 3.1E-07 53.2 3.5 26 185-210 35-60 (228)
344 PRK11124 artP arginine transpo 95.4 0.014 3.1E-07 53.8 3.5 26 185-210 27-52 (242)
345 cd03229 ABC_Class3 This class 95.4 0.015 3.3E-07 51.5 3.5 26 185-210 25-50 (178)
346 PRK13541 cytochrome c biogenes 95.4 0.015 3.2E-07 52.2 3.5 26 185-210 25-50 (195)
347 COG4619 ABC-type uncharacteriz 95.4 0.014 3E-07 54.3 3.3 28 184-211 27-54 (223)
348 cd03218 ABC_YhbG The ABC trans 95.3 0.015 3.2E-07 53.2 3.4 26 185-210 25-50 (232)
349 PRK06645 DNA polymerase III su 95.3 0.021 4.6E-07 59.8 5.0 29 186-214 43-71 (507)
350 cd03257 ABC_NikE_OppD_transpor 95.3 0.015 3.2E-07 52.8 3.4 27 184-210 29-55 (228)
351 TIGR00368 Mg chelatase-related 95.3 0.0059 1.3E-07 63.8 0.8 38 183-222 208-245 (499)
352 PF08477 Miro: Miro-like prote 95.3 0.018 3.9E-07 46.4 3.5 24 188-211 1-24 (119)
353 CHL00095 clpC Clp protease ATP 95.3 0.052 1.1E-06 59.7 8.0 35 185-219 199-243 (821)
354 CHL00206 ycf2 Ycf2; Provisiona 95.3 0.015 3.2E-07 68.9 4.0 38 185-222 1629-1668(2281)
355 cd03268 ABC_BcrA_bacitracin_re 95.3 0.016 3.5E-07 52.1 3.5 26 185-210 25-50 (208)
356 cd00544 CobU Adenosylcobinamid 95.3 0.014 3E-07 52.5 3.0 29 189-217 2-32 (169)
357 cd03266 ABC_NatA_sodium_export 95.3 0.016 3.5E-07 52.4 3.5 26 185-210 30-55 (218)
358 cd03296 ABC_CysA_sulfate_impor 95.3 0.016 3.4E-07 53.5 3.5 26 185-210 27-52 (239)
359 TIGR03864 PQQ_ABC_ATP ABC tran 95.3 0.016 3.5E-07 53.3 3.5 26 185-210 26-51 (236)
360 PRK15177 Vi polysaccharide exp 95.3 0.016 3.5E-07 53.1 3.4 26 185-210 12-37 (213)
361 PRK11629 lolD lipoprotein tran 95.3 0.016 3.5E-07 53.2 3.5 26 185-210 34-59 (233)
362 KOG1969 DNA replication checkp 95.3 0.015 3.3E-07 63.3 3.6 34 186-219 326-359 (877)
363 PF03668 ATP_bind_2: P-loop AT 95.2 0.015 3.3E-07 56.9 3.3 29 188-217 3-31 (284)
364 cd03264 ABC_drug_resistance_li 95.2 0.015 3.4E-07 52.4 3.2 25 185-210 25-49 (211)
365 PRK10867 signal recognition pa 95.2 0.063 1.4E-06 55.3 7.9 35 186-220 100-140 (433)
366 PRK11264 putative amino-acid A 95.2 0.017 3.7E-07 53.4 3.5 26 185-210 28-53 (250)
367 PRK11248 tauB taurine transpor 95.2 0.017 3.7E-07 54.3 3.5 26 185-210 26-51 (255)
368 PRK14960 DNA polymerase III su 95.2 0.028 6.1E-07 60.9 5.5 28 186-213 37-64 (702)
369 PRK14242 phosphate transporter 95.2 0.018 3.8E-07 53.6 3.5 26 185-210 31-56 (253)
370 KOG0734 AAA+-type ATPase conta 95.2 0.038 8.3E-07 58.7 6.3 64 186-260 337-400 (752)
371 PRK14250 phosphate ABC transpo 95.2 0.018 3.9E-07 53.4 3.5 26 185-210 28-53 (241)
372 PRK14088 dnaA chromosomal repl 95.2 0.09 2E-06 53.9 8.9 38 187-224 131-175 (440)
373 cd03232 ABC_PDR_domain2 The pl 95.2 0.018 3.9E-07 51.7 3.4 25 185-209 32-56 (192)
374 PRK09493 glnQ glutamine ABC tr 95.2 0.018 4E-07 53.0 3.5 26 185-210 26-51 (240)
375 cd03247 ABCC_cytochrome_bd The 95.2 0.02 4.2E-07 50.6 3.5 26 185-210 27-52 (178)
376 TIGR01189 ccmA heme ABC export 95.1 0.019 4.2E-07 51.4 3.5 26 185-210 25-50 (198)
377 COG1341 Predicted GTPase or GT 95.1 0.018 4E-07 58.6 3.7 35 185-219 72-111 (398)
378 cd03222 ABC_RNaseL_inhibitor T 95.1 0.018 3.9E-07 52.1 3.3 26 185-210 24-49 (177)
379 TIGR02782 TrbB_P P-type conjug 95.1 0.023 5E-07 55.4 4.2 38 185-222 131-173 (299)
380 PRK10744 pstB phosphate transp 95.1 0.019 4E-07 53.9 3.5 26 185-210 38-63 (260)
381 PRK10247 putative ABC transpor 95.1 0.02 4.2E-07 52.6 3.5 26 185-210 32-57 (225)
382 PRK10895 lipopolysaccharide AB 95.1 0.019 4.2E-07 52.9 3.5 26 185-210 28-53 (241)
383 PRK14247 phosphate ABC transpo 95.1 0.019 4.2E-07 53.2 3.5 26 185-210 28-53 (250)
384 cd00298 ACD_sHsps_p23-like Thi 95.1 0.047 1E-06 39.9 4.9 73 83-158 1-79 (80)
385 PRK11300 livG leucine/isoleuci 95.1 0.018 3.9E-07 53.5 3.3 26 185-210 30-55 (255)
386 PRK10908 cell division protein 95.1 0.02 4.3E-07 52.2 3.5 26 185-210 27-52 (222)
387 TIGR03771 anch_rpt_ABC anchore 95.1 0.019 4.2E-07 52.6 3.4 26 185-210 5-30 (223)
388 PRK14262 phosphate ABC transpo 95.1 0.02 4.3E-07 53.1 3.5 26 185-210 28-53 (250)
389 cd03254 ABCC_Glucan_exporter_l 95.1 0.02 4.4E-07 52.2 3.5 27 184-210 27-53 (229)
390 TIGR03005 ectoine_ehuA ectoine 95.1 0.019 4.2E-07 53.3 3.4 26 185-210 25-50 (252)
391 cd03233 ABC_PDR_domain1 The pl 95.1 0.018 3.8E-07 52.2 3.0 28 184-211 31-58 (202)
392 PRK13341 recombination factor 95.1 0.021 4.5E-07 62.3 4.1 35 186-220 52-86 (725)
393 PLN03025 replication factor C 95.1 0.023 5E-07 55.1 4.0 25 186-210 34-58 (319)
394 PRK14274 phosphate ABC transpo 95.1 0.022 4.7E-07 53.3 3.7 26 185-210 37-62 (259)
395 cd03215 ABC_Carb_Monos_II This 95.1 0.021 4.5E-07 50.8 3.4 27 185-211 25-51 (182)
396 PRK13540 cytochrome c biogenes 95.1 0.021 4.6E-07 51.3 3.5 26 185-210 26-51 (200)
397 PF13479 AAA_24: AAA domain 95.1 0.031 6.8E-07 51.3 4.7 32 186-220 3-34 (213)
398 PLN02318 phosphoribulokinase/u 95.1 0.017 3.7E-07 62.0 3.3 35 187-221 66-101 (656)
399 PF01078 Mg_chelatase: Magnesi 95.1 0.019 4.2E-07 53.8 3.3 36 185-222 21-56 (206)
400 TIGR02770 nickel_nikD nickel i 95.1 0.02 4.4E-07 52.6 3.4 27 185-211 11-37 (230)
401 PLN02796 D-glycerate 3-kinase 95.0 0.037 8E-07 55.6 5.5 35 187-221 101-140 (347)
402 PRK13768 GTPase; Provisional 95.0 0.024 5.1E-07 53.8 3.9 34 187-220 3-41 (253)
403 COG1419 FlhF Flagellar GTP-bin 95.0 0.14 3E-06 52.5 9.6 117 168-292 182-322 (407)
404 cd03295 ABC_OpuCA_Osmoprotecti 95.0 0.021 4.6E-07 52.8 3.5 26 185-210 26-51 (242)
405 COG1072 CoaA Panthothenate kin 95.0 0.029 6.4E-07 54.8 4.6 106 186-298 82-227 (283)
406 PRK14963 DNA polymerase III su 95.0 0.024 5.3E-07 59.2 4.3 27 186-212 36-62 (504)
407 cd04155 Arl3 Arl3 subfamily. 95.0 0.029 6.3E-07 48.0 4.1 27 183-209 11-37 (173)
408 COG1126 GlnQ ABC-type polar am 95.0 0.02 4.3E-07 54.6 3.3 34 185-218 27-64 (240)
409 cd03223 ABCD_peroxisomal_ALDP 95.0 0.022 4.9E-07 50.1 3.5 27 184-210 25-51 (166)
410 TIGR02323 CP_lyasePhnK phospho 95.0 0.021 4.5E-07 53.1 3.4 26 185-210 28-53 (253)
411 COG3709 Uncharacterized compon 95.0 0.066 1.4E-06 49.3 6.5 29 185-213 4-32 (192)
412 TIGR00972 3a0107s01c2 phosphat 95.0 0.021 4.6E-07 52.9 3.5 26 185-210 26-51 (247)
413 cd03234 ABCG_White The White s 95.0 0.021 4.5E-07 52.3 3.3 28 184-211 31-58 (226)
414 PRK14964 DNA polymerase III su 95.0 0.031 6.6E-07 58.5 5.0 28 186-213 35-62 (491)
415 TIGR01184 ntrCD nitrate transp 95.0 0.022 4.7E-07 52.6 3.5 26 185-210 10-35 (230)
416 COG3839 MalK ABC-type sugar tr 95.0 0.02 4.4E-07 57.3 3.4 26 185-210 28-53 (338)
417 PRK13543 cytochrome c biogenes 95.0 0.022 4.8E-07 51.8 3.5 26 185-210 36-61 (214)
418 cd03251 ABCC_MsbA MsbA is an e 95.0 0.022 4.8E-07 52.0 3.5 26 185-210 27-52 (234)
419 cd03298 ABC_ThiQ_thiamine_tran 95.0 0.023 4.9E-07 51.3 3.5 27 184-210 22-48 (211)
420 cd03246 ABCC_Protease_Secretio 95.0 0.024 5.2E-07 50.0 3.5 26 185-210 27-52 (173)
421 PRK14267 phosphate ABC transpo 95.0 0.022 4.7E-07 52.9 3.5 26 185-210 29-54 (253)
422 COG2274 SunT ABC-type bacterio 95.0 0.063 1.4E-06 58.5 7.4 103 185-291 498-637 (709)
423 cd01394 radB RadB. The archaea 95.0 0.026 5.6E-07 51.2 3.8 38 183-220 16-58 (218)
424 cd03216 ABC_Carb_Monos_I This 95.0 0.024 5.2E-07 49.7 3.5 26 185-210 25-50 (163)
425 cd01131 PilT Pilus retraction 95.0 0.022 4.7E-07 51.8 3.3 24 188-211 3-26 (198)
426 PRK10619 histidine/lysine/argi 94.9 0.023 4.9E-07 53.1 3.5 26 185-210 30-55 (257)
427 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.9 0.023 5E-07 52.2 3.5 26 185-210 28-53 (238)
428 PRK11831 putative ABC transpor 94.9 0.022 4.8E-07 53.8 3.4 26 185-210 32-57 (269)
429 PRK14244 phosphate ABC transpo 94.9 0.024 5.1E-07 52.7 3.5 26 185-210 30-55 (251)
430 cd03245 ABCC_bacteriocin_expor 94.9 0.024 5.2E-07 51.4 3.5 27 184-210 28-54 (220)
431 PRK10575 iron-hydroxamate tran 94.9 0.021 4.6E-07 53.8 3.2 26 185-210 36-61 (265)
432 PRK14256 phosphate ABC transpo 94.9 0.023 5.1E-07 52.8 3.5 26 185-210 29-54 (252)
433 PRK14253 phosphate ABC transpo 94.9 0.024 5.1E-07 52.6 3.5 26 185-210 28-53 (249)
434 PRK10771 thiQ thiamine transpo 94.9 0.023 5E-07 52.2 3.4 26 185-210 24-49 (232)
435 PRK11701 phnK phosphonate C-P 94.9 0.023 5.1E-07 53.1 3.5 26 185-210 31-56 (258)
436 cd03252 ABCC_Hemolysin The ABC 94.9 0.024 5.2E-07 52.1 3.5 27 184-210 26-52 (237)
437 COG4608 AppF ABC-type oligopep 94.9 0.021 4.6E-07 55.5 3.2 35 185-219 38-76 (268)
438 PRK13539 cytochrome c biogenes 94.9 0.025 5.3E-07 51.3 3.5 26 185-210 27-52 (207)
439 cd03248 ABCC_TAP TAP, the Tran 94.9 0.025 5.3E-07 51.6 3.5 27 184-210 38-64 (226)
440 PRK14241 phosphate transporter 94.9 0.024 5.1E-07 53.0 3.5 26 185-210 29-54 (258)
441 cd03250 ABCC_MRP_domain1 Domai 94.9 0.025 5.4E-07 50.9 3.5 27 184-210 29-55 (204)
442 TIGR01277 thiQ thiamine ABC tr 94.9 0.024 5.3E-07 51.3 3.5 27 184-210 22-48 (213)
443 COG1120 FepC ABC-type cobalami 94.9 0.022 4.8E-07 55.0 3.3 37 185-221 27-67 (258)
444 PRK14248 phosphate ABC transpo 94.9 0.024 5.2E-07 53.4 3.5 26 185-210 46-71 (268)
445 PRK14239 phosphate transporter 94.9 0.024 5.2E-07 52.5 3.4 25 185-209 30-54 (252)
446 cd03237 ABC_RNaseL_inhibitor_d 94.9 0.024 5.2E-07 53.4 3.5 26 185-210 24-49 (246)
447 TIGR02324 CP_lyasePhnL phospho 94.9 0.025 5.4E-07 51.5 3.5 27 184-210 32-58 (224)
448 PRK14251 phosphate ABC transpo 94.9 0.025 5.3E-07 52.5 3.5 26 185-210 29-54 (251)
449 PRK11889 flhF flagellar biosyn 94.9 0.024 5.2E-07 58.4 3.7 35 186-220 241-280 (436)
450 cd03214 ABC_Iron-Siderophores_ 94.9 0.026 5.6E-07 50.0 3.5 26 185-210 24-49 (180)
451 cd03228 ABCC_MRP_Like The MRP 94.9 0.027 5.8E-07 49.6 3.5 28 184-211 26-53 (171)
452 PRK14255 phosphate ABC transpo 94.9 0.025 5.3E-07 52.6 3.5 26 185-210 30-55 (252)
453 PRK13538 cytochrome c biogenes 94.9 0.025 5.4E-07 51.0 3.4 26 185-210 26-51 (204)
454 KOG0744 AAA+-type ATPase [Post 94.9 0.02 4.3E-07 57.7 3.0 31 187-217 178-208 (423)
455 cd03244 ABCC_MRP_domain2 Domai 94.9 0.026 5.6E-07 51.2 3.5 27 184-210 28-54 (221)
456 PRK11247 ssuB aliphatic sulfon 94.8 0.025 5.4E-07 53.6 3.5 26 185-210 37-62 (257)
457 PRK14245 phosphate ABC transpo 94.8 0.025 5.5E-07 52.5 3.5 25 185-209 28-52 (250)
458 cd03267 ABC_NatA_like Similar 94.8 0.025 5.4E-07 52.3 3.5 26 185-210 46-71 (236)
459 COG1116 TauB ABC-type nitrate/ 94.8 0.025 5.3E-07 54.5 3.5 27 185-211 28-54 (248)
460 TIGR02868 CydC thiol reductant 94.8 0.021 4.5E-07 58.8 3.2 28 184-211 359-386 (529)
461 PRK14261 phosphate ABC transpo 94.8 0.025 5.5E-07 52.6 3.4 26 185-210 31-56 (253)
462 PRK14955 DNA polymerase III su 94.8 0.039 8.4E-07 55.6 5.0 28 186-213 38-65 (397)
463 PRK14273 phosphate ABC transpo 94.8 0.027 5.7E-07 52.5 3.5 26 185-210 32-57 (254)
464 PRK04296 thymidine kinase; Pro 94.8 0.025 5.5E-07 51.1 3.2 25 186-210 2-26 (190)
465 PRK10751 molybdopterin-guanine 94.8 0.028 6E-07 51.2 3.5 26 186-211 6-31 (173)
466 PRK14958 DNA polymerase III su 94.8 0.039 8.5E-07 57.8 5.1 28 186-213 38-65 (509)
467 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.8 0.026 5.7E-07 51.9 3.4 26 185-210 47-72 (224)
468 KOG0736 Peroxisome assembly fa 94.8 0.07 1.5E-06 58.6 7.0 43 186-228 705-749 (953)
469 PRK08116 hypothetical protein; 94.8 0.16 3.5E-06 48.7 8.9 38 186-223 114-156 (268)
470 PRK13638 cbiO cobalt transport 94.8 0.025 5.4E-07 53.4 3.3 26 185-210 26-51 (271)
471 cd03290 ABCC_SUR1_N The SUR do 94.8 0.028 6.1E-07 51.0 3.5 26 185-210 26-51 (218)
472 KOG0737 AAA+-type ATPase [Post 94.8 0.023 5.1E-07 57.5 3.2 35 185-219 126-160 (386)
473 PRK09580 sufC cysteine desulfu 94.8 0.025 5.4E-07 52.2 3.2 26 185-210 26-51 (248)
474 PRK13645 cbiO cobalt transport 94.8 0.026 5.7E-07 53.9 3.4 26 185-210 36-61 (289)
475 PRK15093 antimicrobial peptide 94.7 0.026 5.7E-07 55.3 3.5 26 185-210 32-57 (330)
476 PRK14269 phosphate ABC transpo 94.7 0.028 6.1E-07 52.2 3.5 26 185-210 27-52 (246)
477 PRK13648 cbiO cobalt transport 94.7 0.027 5.9E-07 53.1 3.5 26 185-210 34-59 (269)
478 cd03253 ABCC_ATM1_transporter 94.7 0.028 6.1E-07 51.4 3.5 26 185-210 26-51 (236)
479 PRK15056 manganese/iron transp 94.7 0.027 5.8E-07 53.3 3.4 26 185-210 32-57 (272)
480 CHL00131 ycf16 sulfate ABC tra 94.7 0.025 5.5E-07 52.4 3.2 25 185-209 32-56 (252)
481 PRK15455 PrkA family serine pr 94.7 0.024 5.1E-07 60.8 3.3 27 185-211 102-128 (644)
482 TIGR00231 small_GTP small GTP- 94.7 0.029 6.2E-07 45.3 3.1 24 187-210 2-25 (161)
483 PRK14259 phosphate ABC transpo 94.7 0.027 5.9E-07 53.3 3.5 26 185-210 38-63 (269)
484 TIGR03411 urea_trans_UrtD urea 94.7 0.028 6.1E-07 51.8 3.4 26 185-210 27-52 (242)
485 PRK12323 DNA polymerase III su 94.7 0.12 2.6E-06 56.2 8.6 27 186-212 38-64 (700)
486 TIGR02928 orc1/cdc6 family rep 94.7 0.042 9.1E-07 53.4 4.8 26 185-210 39-64 (365)
487 PRK13649 cbiO cobalt transport 94.7 0.027 5.9E-07 53.3 3.4 26 185-210 32-57 (280)
488 PRK14237 phosphate transporter 94.7 0.029 6.3E-07 53.0 3.5 26 185-210 45-70 (267)
489 PRK09544 znuC high-affinity zi 94.7 0.029 6.2E-07 52.9 3.5 26 185-210 29-54 (251)
490 TIGR00176 mobB molybdopterin-g 94.7 0.029 6.3E-07 49.6 3.3 22 189-210 2-23 (155)
491 PRK10418 nikD nickel transport 94.7 0.029 6.2E-07 52.4 3.5 26 185-210 28-53 (254)
492 cd03294 ABC_Pro_Gly_Bertaine T 94.7 0.029 6.2E-07 53.1 3.5 26 185-210 49-74 (269)
493 PRK10419 nikE nickel transport 94.7 0.028 6.1E-07 53.2 3.4 26 185-210 37-62 (268)
494 cd03369 ABCC_NFT1 Domain 2 of 94.7 0.031 6.7E-07 50.4 3.5 28 183-210 31-58 (207)
495 cd04163 Era Era subfamily. Er 94.7 0.03 6.4E-07 46.1 3.1 23 186-208 3-25 (168)
496 TIGR00073 hypB hydrogenase acc 94.7 0.036 7.9E-07 50.4 4.0 27 185-211 21-47 (207)
497 COG1224 TIP49 DNA helicase TIP 94.7 0.045 9.8E-07 55.7 4.9 36 182-217 61-98 (450)
498 PRK14270 phosphate ABC transpo 94.7 0.03 6.6E-07 52.0 3.5 26 185-210 29-54 (251)
499 cd03213 ABCG_EPDR ABCG transpo 94.7 0.03 6.4E-07 50.4 3.3 26 185-210 34-59 (194)
500 PRK10865 protein disaggregatio 94.7 0.033 7.1E-07 61.7 4.3 26 185-210 198-223 (857)
No 1
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.97 E-value=6.6e-32 Score=242.81 Aligned_cols=121 Identities=23% Similarity=0.235 Sum_probs=109.3
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCC
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGG 265 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG 265 (345)
.++|+|||||||||||||+.||++|+++|+|+|++||+.+||+|++||+++||++||++|.++++++....+.|||||||
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~ViaTGGG 81 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEVLKELLEEDNAVIATGGG 81 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEECCCc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred CCcccCcHHHHHHHh-cCcEEEEEcChhhhchhhhhhhcccccccccc
Q 019172 266 QQGAAARADKWQHLY-AGFTVWLSQTEAMGKLLRVFVLSLHLRSVTSY 312 (345)
Q Consensus 266 ~~~avlr~~~r~~L~-~G~VV~Ld~s~a~~~~~Rv~v~~~h~R~~~~~ 312 (345)
++++++||.+|+ +|.||||+++.++. ..| ......||+...
T Consensus 82 ---~v~~~enr~~l~~~g~vv~L~~~~e~l-~~R--l~~~~~RPll~~ 123 (172)
T COG0703 82 ---AVLSEENRNLLKKRGIVVYLDAPFETL-YER--LQRDRKRPLLQT 123 (172)
T ss_pred ---cccCHHHHHHHHhCCeEEEEeCCHHHH-HHH--hccccCCCcccC
Confidence 599999999998 79999999999976 555 333344655443
No 2
>PLN02199 shikimate kinase
Probab=99.94 E-value=2.1e-26 Score=222.68 Aligned_cols=129 Identities=26% Similarity=0.377 Sum_probs=113.2
Q ss_pred HhhhhhcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH-HcCchhhhhhccChHHHHHHHHHHHHHHhcCC
Q 019172 178 AGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF-AKQTIDSWMLAEGSDSVVNGECDVLESLSSHV 256 (345)
Q Consensus 178 a~~~~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~-~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~ 256 (345)
..+...+.+++|+|||+|||||||||+.||+.||++|||+|.++++. .|+++.+||+.+||+.||++|.++|+++....
T Consensus 94 ~~i~~~l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~~ 173 (303)
T PLN02199 94 EEVKPYLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRY 173 (303)
T ss_pred HHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcC
Confidence 34557888999999999999999999999999999999999999997 59999999999999999999999999998777
Q ss_pred CEEEEcCCCCCcccCcHHHHHHHhcCcEEEEEcChhhhchhhhhhhcccccccc
Q 019172 257 RAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMGKLLRVFVLSLHLRSVT 310 (345)
Q Consensus 257 ~~VIAtGGG~~~avlr~~~r~~L~~G~VV~Ld~s~a~~~~~Rv~v~~~h~R~~~ 310 (345)
++||||||| ++++++||++|+.|++|||+++.+.. ..|+.......||+.
T Consensus 174 ~~VIStGGG---~V~~~~n~~~L~~G~vV~Ldas~E~l-~~RL~~~~~~~RPLL 223 (303)
T PLN02199 174 QVVVSTGGG---AVIRPINWKYMHKGISIWLDVPLEAL-AHRIAAVGTDSRPLL 223 (303)
T ss_pred CEEEECCCc---ccCCHHHHHHHhCCeEEEEECCHHHH-HHHHhhcCCCCCCcC
Confidence 899999999 59999999999999999999999876 555332112345554
No 3
>PRK13948 shikimate kinase; Provisional
Probab=99.93 E-value=7.3e-26 Score=204.44 Aligned_cols=110 Identities=20% Similarity=0.173 Sum_probs=103.3
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCC
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLG 264 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGG 264 (345)
.+.+|+|+|+|||||||+|+.||+.||++|+|+|.++++.+|++++++|+.+||++||++|.+++++++...+.||||||
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g~si~~if~~~Ge~~fR~~E~~~l~~l~~~~~~VIa~Gg 88 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTGKSIPEIFRHLGEAYFRRCEAEVVRRLTRLDYAVISLGG 88 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHhCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCeEEECCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999877889999999
Q ss_pred CCCcccCcHHHHHHHh-cCcEEEEEcChhhhchhh
Q 019172 265 GQQGAAARADKWQHLY-AGFTVWLSQTEAMGKLLR 298 (345)
Q Consensus 265 G~~~avlr~~~r~~L~-~G~VV~Ld~s~a~~~~~R 298 (345)
| ++++++|++.|+ .|.+|||+++.++. ..|
T Consensus 89 G---~v~~~~n~~~l~~~g~vV~L~~~~e~l-~~R 119 (182)
T PRK13948 89 G---TFMHEENRRKLLSRGPVVVLWASPETI-YER 119 (182)
T ss_pred c---EEcCHHHHHHHHcCCeEEEEECCHHHH-HHH
Confidence 9 599999999997 79999999999876 445
No 4
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.92 E-value=6.9e-25 Score=191.29 Aligned_cols=101 Identities=20% Similarity=0.233 Sum_probs=92.7
Q ss_pred CCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCCCCcccCcHH
Q 019172 195 STEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARAD 274 (345)
Q Consensus 195 ~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG~~~avlr~~ 274 (345)
|||||||||++||+.||++|+|+|++|++.+|+++++++.++||+.||+.|.++|+++....++||||||| ++++++
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g~si~~i~~~~G~~~fr~~E~~~l~~l~~~~~~VIa~GGG---~~~~~~ 77 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTGMSISEIFAEEGEEAFRELESEALRELLKENNCVIACGGG---IVLKEE 77 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEE-TT---GGGSHH
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHhCCcHHHHHHcCChHHHHHHHHHHHHHHhccCcEEEeCCCC---CcCcHH
Confidence 79999999999999999999999999999999999999999999999999999999999887999999999 599999
Q ss_pred HHHHHh-cCcEEEEEcChhhhchhhh
Q 019172 275 KWQHLY-AGFTVWLSQTEAMGKLLRV 299 (345)
Q Consensus 275 ~r~~L~-~G~VV~Ld~s~a~~~~~Rv 299 (345)
++++|+ .|.+|||+.+++.. ..|.
T Consensus 78 ~~~~L~~~g~vI~L~~~~~~l-~~Rl 102 (158)
T PF01202_consen 78 NRELLKENGLVIYLDADPEEL-AERL 102 (158)
T ss_dssp HHHHHHHHSEEEEEE--HHHH-HHHH
T ss_pred HHHHHHhCCEEEEEeCCHHHH-HHHH
Confidence 999998 89999999999866 5553
No 5
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.91 E-value=1.2e-24 Score=224.64 Aligned_cols=110 Identities=17% Similarity=0.197 Sum_probs=101.4
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCC
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLG 264 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGG 264 (345)
+...|+|||||||||||+|+.||++||++|+|+|++||+.+|+++++||+++||++||++|.++|+++....+.||||||
T Consensus 5 ~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~g~si~eif~~~Ge~~FR~~E~~~l~~~~~~~~~VIs~GG 84 (542)
T PRK14021 5 RRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREIGMSIPSYFEEYGEPAFREVEADVVADMLEDFDGIFSLGG 84 (542)
T ss_pred CCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEECCC
Confidence 45689999999999999999999999999999999999999999999999999999999999999998866789999999
Q ss_pred CCCcccCcHHHHHHH----h-cCcEEEEEcChhhhchhh
Q 019172 265 GQQGAAARADKWQHL----Y-AGFTVWLSQTEAMGKLLR 298 (345)
Q Consensus 265 G~~~avlr~~~r~~L----~-~G~VV~Ld~s~a~~~~~R 298 (345)
| ++++++||++| + +|.+|||+++.++. ..|
T Consensus 85 G---~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l-~~R 119 (542)
T PRK14021 85 G---APMTPSTQHALASYIAHGGRVVYLDADPKEA-MER 119 (542)
T ss_pred c---hhCCHHHHHHHHHHHhcCCEEEEEECCHHHH-HHH
Confidence 9 59999999976 4 58999999999876 444
No 6
>PRK00625 shikimate kinase; Provisional
Probab=99.91 E-value=2.5e-24 Score=192.74 Aligned_cols=107 Identities=25% Similarity=0.235 Sum_probs=98.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcC----chhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEc
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ----TIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVAT 262 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~----sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAt 262 (345)
++|+|+|+|||||||+|+.||+.||++|+|+|+++++.+|+ ++.++++.+||++||+.|.++++++.. .+.||+|
T Consensus 1 ~~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~-~~~VIs~ 79 (173)
T PRK00625 1 MQIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALYSSPKEIYQAYGEEGFCREEFLALTSLPV-IPSIVAL 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHhcc-CCeEEEC
Confidence 57999999999999999999999999999999999999998 999999999999999999999999875 6789999
Q ss_pred CCCCCcccCcHHHHHHHh-cCcEEEEEcChhhhchhh
Q 019172 263 LGGQQGAAARADKWQHLY-AGFTVWLSQTEAMGKLLR 298 (345)
Q Consensus 263 GGG~~~avlr~~~r~~L~-~G~VV~Ld~s~a~~~~~R 298 (345)
||| +++.+++++.|+ .|.+|||+++.++. ..|
T Consensus 80 GGg---~~~~~e~~~~l~~~~~Vv~L~~~~e~l-~~R 112 (173)
T PRK00625 80 GGG---TLMIEPSYAHIRNRGLLVLLSLPIATI-YQR 112 (173)
T ss_pred CCC---ccCCHHHHHHHhcCCEEEEEECCHHHH-HHH
Confidence 999 599999999997 68999999998865 444
No 7
>PRK13949 shikimate kinase; Provisional
Probab=99.90 E-value=1.4e-23 Score=186.30 Aligned_cols=108 Identities=23% Similarity=0.301 Sum_probs=100.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCCC
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ 266 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG~ 266 (345)
++|+|+|+|||||||+|+.||+.+|++|+|+|.++++..|+++.++++..|++.||++|.++++++....++|||||||
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~~~~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vis~Ggg- 80 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHKTVGDIFAERGEAVFRELERNMLHEVAEFEDVVISTGGG- 80 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCccHHHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCCc-
Confidence 4799999999999999999999999999999999999999999999999999999999999999987777899999999
Q ss_pred CcccCcHHHHHHHh-cCcEEEEEcChhhhchhh
Q 019172 267 QGAAARADKWQHLY-AGFTVWLSQTEAMGKLLR 298 (345)
Q Consensus 267 ~~avlr~~~r~~L~-~G~VV~Ld~s~a~~~~~R 298 (345)
++..++++++|+ .|.+|||+++.+.. ..|
T Consensus 81 --~~~~~~~~~~l~~~~~vi~L~~~~~~~-~~R 110 (169)
T PRK13949 81 --APCFFDNMELMNASGTTVYLKVSPEVL-FVR 110 (169)
T ss_pred --ccCCHHHHHHHHhCCeEEEEECCHHHH-HHH
Confidence 489999999997 79999999999875 445
No 8
>PRK13946 shikimate kinase; Provisional
Probab=99.89 E-value=9.2e-23 Score=181.98 Aligned_cols=113 Identities=27% Similarity=0.258 Sum_probs=104.3
Q ss_pred hhcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEE
Q 019172 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVA 261 (345)
Q Consensus 182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIA 261 (345)
..+..++|+|+|++||||||+|+.||++||++|+|+|.++++..|+++.+++...|+++|++.|.++++++....++||+
T Consensus 6 ~~~~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~g~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~~~Vi~ 85 (184)
T PRK13946 6 AALGKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAARMTIAEIFAAYGEPEFRDLERRVIARLLKGGPLVLA 85 (184)
T ss_pred hccCCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999877789999
Q ss_pred cCCCCCcccCcHHHHHHHh-cCcEEEEEcChhhhchhh
Q 019172 262 TLGGQQGAAARADKWQHLY-AGFTVWLSQTEAMGKLLR 298 (345)
Q Consensus 262 tGGG~~~avlr~~~r~~L~-~G~VV~Ld~s~a~~~~~R 298 (345)
|||| .++.+++|+.|+ +|.+|||++|.+.. ..|
T Consensus 86 ~ggg---~~~~~~~r~~l~~~~~~v~L~a~~e~~-~~R 119 (184)
T PRK13946 86 TGGG---AFMNEETRAAIAEKGISVWLKADLDVL-WER 119 (184)
T ss_pred CCCC---CcCCHHHHHHHHcCCEEEEEECCHHHH-HHH
Confidence 9998 489999999997 79999999999865 455
No 9
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.88 E-value=2.2e-22 Score=178.63 Aligned_cols=120 Identities=23% Similarity=0.269 Sum_probs=106.0
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCC
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLG 264 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGG 264 (345)
+.++|+|+|++||||||+|+.||+.+|++|+|+|..+++..|+++.++++..|++.||+.|.++++++....++||++||
T Consensus 3 ~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vi~~gg 82 (172)
T PRK05057 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADIGWVFDVEGEEGFRDREEKVINELTEKQGIVLATGG 82 (172)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhCcCHhHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 35789999999999999999999999999999999999999999999999999999999999999998877789999999
Q ss_pred CCCcccCcHHHHHHHh-cCcEEEEEcChhhhchhhhhhhcccccccc
Q 019172 265 GQQGAAARADKWQHLY-AGFTVWLSQTEAMGKLLRVFVLSLHLRSVT 310 (345)
Q Consensus 265 G~~~avlr~~~r~~L~-~G~VV~Ld~s~a~~~~~Rv~v~~~h~R~~~ 310 (345)
| +++++++|++|+ .|.+|||+++.+.. ..| +.....||+.
T Consensus 83 g---~v~~~~~~~~l~~~~~vv~L~~~~e~~-~~R--i~~~~~rP~~ 123 (172)
T PRK05057 83 G---SVKSRETRNRLSARGVVVYLETTIEKQ-LAR--TQRDKKRPLL 123 (172)
T ss_pred c---hhCCHHHHHHHHhCCEEEEEeCCHHHH-HHH--HhCCCCCCCC
Confidence 8 589999999997 79999999999865 445 2333445544
No 10
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.88 E-value=5.2e-22 Score=173.07 Aligned_cols=141 Identities=19% Similarity=0.265 Sum_probs=112.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCCC
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ 266 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG~ 266 (345)
++|+|+|++||||||+|+.||++||++|+|.|.+++...|+++.+++++.||++|++.|.++++.+. ..+.||+||||
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g~~~~~~~~~~g~~~~~~~e~~~~~~~~-~~~~vi~~ggg- 80 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSNMTVAEIVEREGWAGFRARESAALEAVT-APSTVIATGGG- 80 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHhc-CCCeEEECCCC-
Confidence 5799999999999999999999999999999999999999999999999999999999999997664 46789999999
Q ss_pred CcccCcHHHHHHHh-cCcEEEEEcChhhhchhhhhhh-------------------ccccccccccceeeeeeccCCCCh
Q 019172 267 QGAAARADKWQHLY-AGFTVWLSQTEAMGKLLRVFVL-------------------SLHLRSVTSYFVRLEFVSSFSRTN 326 (345)
Q Consensus 267 ~~avlr~~~r~~L~-~G~VV~Ld~s~a~~~~~Rv~v~-------------------~~h~R~~~~~~~~le~i~~~~r~~ 326 (345)
++++++++++|+ .|.+|||+++++.. ..|...+ ..+.+....|.....++.|-.++.
T Consensus 81 --~vl~~~~~~~l~~~~~~v~l~~~~~~~-~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~~y~~~a~~~Id~~~~~ 157 (171)
T PRK03731 81 --IILTEENRHFMRNNGIVIYLCAPVSVL-ANRLEANPEEDQRPTLTGKPISEEVAEVLAEREALYREVAHHIIDATQPP 157 (171)
T ss_pred --ccCCHHHHHHHHhCCEEEEEECCHHHH-HHHHccccccccCCcCCCCChHHHHHHHHHHHHHHHHHhCCEEEcCCCCH
Confidence 489999999997 79999999998865 3332211 111112222322234667777788
Q ss_pred HHHhhh
Q 019172 327 EHIMAR 332 (345)
Q Consensus 327 ~~~~~~ 332 (345)
|+|..+
T Consensus 158 e~v~~~ 163 (171)
T PRK03731 158 SQVVSE 163 (171)
T ss_pred HHHHHH
Confidence 888665
No 11
>PRK13947 shikimate kinase; Provisional
Probab=99.87 E-value=7.2e-22 Score=171.58 Aligned_cols=108 Identities=20% Similarity=0.240 Sum_probs=99.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCCC
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ 266 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG~ 266 (345)
++|+|+|+|||||||+|+.||++||++|+|.|.++++..|+++.+++...|+++|++.|.++++++....++||+||||
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~g~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~vi~~g~g- 80 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMTGMTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLVIATGGG- 80 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhcCCcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeEEECCCC-
Confidence 3799999999999999999999999999999999999999999999999999999999999999998777899999998
Q ss_pred CcccCcHHHHHHHh-cCcEEEEEcChhhhchhh
Q 019172 267 QGAAARADKWQHLY-AGFTVWLSQTEAMGKLLR 298 (345)
Q Consensus 267 ~~avlr~~~r~~L~-~G~VV~Ld~s~a~~~~~R 298 (345)
.++++++++.|+ .|.+|||+++.+.. ..|
T Consensus 81 --~vl~~~~~~~l~~~~~vv~L~~~~~~l-~~R 110 (171)
T PRK13947 81 --VVLNPENVVQLRKNGVVICLKARPEVI-LRR 110 (171)
T ss_pred --CcCCHHHHHHHHhCCEEEEEECCHHHH-HHH
Confidence 489999999997 68999999998865 444
No 12
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.83 E-value=2.6e-20 Score=190.59 Aligned_cols=108 Identities=20% Similarity=0.221 Sum_probs=100.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCCC
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ 266 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG~ 266 (345)
|+|+|+|+|||||||+|+.||+.||++|+|+|+++++..|+++.++++++|+++||++|.++++++....+.||+||||
T Consensus 1 m~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vis~Ggg- 79 (488)
T PRK13951 1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREGRSVRRIFEEDGEEYFRLKEKELLRELVERDNVVVATGGG- 79 (488)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHcCCCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEEECCCc-
Confidence 5799999999999999999999999999999999999999999999999999999999999999998777899999999
Q ss_pred CcccCcHHHHHHHhcCcEEEEEcChhhhchhh
Q 019172 267 QGAAARADKWQHLYAGFTVWLSQTEAMGKLLR 298 (345)
Q Consensus 267 ~~avlr~~~r~~L~~G~VV~Ld~s~a~~~~~R 298 (345)
+++++++|+.|+.+.+|||+++.++. ..|
T Consensus 80 --vv~~~~~r~~l~~~~vI~L~as~e~l-~~R 108 (488)
T PRK13951 80 --VVIDPENRELLKKEKTLFLYAPPEVL-MER 108 (488)
T ss_pred --cccChHHHHHHhcCeEEEEECCHHHH-HHH
Confidence 58999999999877799999998865 444
No 13
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.82 E-value=9e-20 Score=156.76 Aligned_cols=107 Identities=29% Similarity=0.334 Sum_probs=98.9
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCC
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLG 264 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGG 264 (345)
.++.|+|+|++||||||+|+.||+.||++|+|.|+++++..|.++.+++..+|++.|++.|.++++++....+.||++||
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~g~ 82 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGKSIPEIFEEEGEAAFRELEEEVLAELLARHNLVISTGG 82 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCCEEEeCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999998876678999998
Q ss_pred CCCcccCcHHHHHHHh-cCcEEEEEcChhhh
Q 019172 265 GQQGAAARADKWQHLY-AGFTVWLSQTEAMG 294 (345)
Q Consensus 265 G~~~avlr~~~r~~L~-~G~VV~Ld~s~a~~ 294 (345)
| +++.+.+|+.|+ .+.+|||++|.+..
T Consensus 83 ~---~~~~~~~r~~l~~~~~~v~l~~~~~~~ 110 (175)
T PRK00131 83 G---AVLREENRALLRERGTVVYLDASFEEL 110 (175)
T ss_pred C---EeecHHHHHHHHhCCEEEEEECCHHHH
Confidence 8 588999999995 78999999998864
No 14
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.81 E-value=2.1e-19 Score=152.40 Aligned_cols=104 Identities=31% Similarity=0.363 Sum_probs=95.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Q 019172 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQ 267 (345)
Q Consensus 188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG~~ 267 (345)
+|+|+|++||||||+|+.||+.||++++|.|+++++..|+++.++++..|++.|++.|.+++..+....+.||++|+|
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~vi~~g~~-- 78 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGMSIPEIFAEEGEEGFRELEREVLLLLLTKENAVIATGGG-- 78 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHhccCCcEEECCCC--
Confidence 589999999999999999999999999999999999999999999999999999999999999988888899999888
Q ss_pred cccCcHHHHHHHh-cCcEEEEEcChhhh
Q 019172 268 GAAARADKWQHLY-AGFTVWLSQTEAMG 294 (345)
Q Consensus 268 ~avlr~~~r~~L~-~G~VV~Ld~s~a~~ 294 (345)
+++...+++.+. .+.+|||++|.+..
T Consensus 79 -~i~~~~~~~~~~~~~~~i~l~~~~e~~ 105 (154)
T cd00464 79 -AVLREENRRLLLENGIVVWLDASPEEL 105 (154)
T ss_pred -ccCcHHHHHHHHcCCeEEEEeCCHHHH
Confidence 488888877765 79999999998755
No 15
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.78 E-value=1.9e-18 Score=166.83 Aligned_cols=107 Identities=23% Similarity=0.277 Sum_probs=97.6
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhc-CCCEEEEcC
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSS-HVRAVVATL 263 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~-~~~~VIAtG 263 (345)
.+++|+|+|++||||||+|+.||+.||++|+|+|..+++..|+++.+++...|++.|+++|++++.++.. ...+||++|
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G~~i~ei~~~~G~~~fr~~e~~~l~~ll~~~~~~VI~~G 211 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAGLSVSEIFALYGQEGYRRLERRALERLIAEHEEMVLATG 211 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhhCCCEEEECC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999765 345899999
Q ss_pred CCCCcccCcHHHHHHHh-cCcEEEEEcChhhh
Q 019172 264 GGQQGAAARADKWQHLY-AGFTVWLSQTEAMG 294 (345)
Q Consensus 264 GG~~~avlr~~~r~~L~-~G~VV~Ld~s~a~~ 294 (345)
|| ++..+.++..+. .+.+|||+++.++.
T Consensus 212 gg---~v~~~~~~~~l~~~~~~V~L~a~~e~~ 240 (309)
T PRK08154 212 GG---IVSEPATFDLLLSHCYTVWLKASPEEH 240 (309)
T ss_pred Cc---hhCCHHHHHHHHhCCEEEEEECCHHHH
Confidence 98 488888898775 78999999998854
No 16
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.74 E-value=6e-18 Score=149.84 Aligned_cols=137 Identities=18% Similarity=0.112 Sum_probs=110.4
Q ss_pred EcCCCCChHHHHHHHHHhhCCceeeCcHHHH-----HHH-cCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCC
Q 019172 192 VGDSTEVNEKVALELAVGLGYTPLSTKELLE-----TFA-KQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGG 265 (345)
Q Consensus 192 IG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE-----~~~-g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG 265 (345)
||++||||||||+.||++||++|||+|+++- ++. |.++. +++.|.|...+-.++..........||+|++
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~---DdDR~pWL~~l~~~~~~~~~~~~~~vi~CSA- 76 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLN---DDDRWPWLEALGDAAASLAQKNKHVVIACSA- 76 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCC---cchhhHHHHHHHHHHHHhhcCCCceEEecHH-
Confidence 6999999999999999999999999999964 332 43433 4567777777766665555554558889986
Q ss_pred CCcccCcHHHHHHHhc---C-cEEEEEcChhhhchhhhhhhccccc---cccccceeeeee--------ccCCCChHHHh
Q 019172 266 QQGAAARADKWQHLYA---G-FTVWLSQTEAMGKLLRVFVLSLHLR---SVTSYFVRLEFV--------SSFSRTNEHIM 330 (345)
Q Consensus 266 ~~~avlr~~~r~~L~~---G-~VV~Ld~s~a~~~~~Rv~v~~~h~R---~~~~~~~~le~i--------~~~~r~~~~~~ 330 (345)
+++.||+.|+. + .+|||+.+.++. ..|...+..|.| .+.+||..||.+ .|...+.|+|.
T Consensus 77 -----LKr~YRD~LR~~~~~~~Fv~L~g~~~~i-~~Rm~~R~gHFM~~~ll~SQfa~LE~P~~de~vi~idi~~~~e~vv 150 (161)
T COG3265 77 -----LKRSYRDLLREANPGLRFVYLDGDFDLI-LERMKARKGHFMPASLLDSQFATLEEPGADEDVLTIDIDQPPEEVV 150 (161)
T ss_pred -----HHHHHHHHHhccCCCeEEEEecCCHHHH-HHHHHhcccCCCCHHHHHHHHHHhcCCCCCCCEEEeeCCCCHHHHH
Confidence 99999999983 2 489999999988 888888889988 789999999988 67899999998
Q ss_pred hhcchhhh
Q 019172 331 ARKPAVMK 338 (345)
Q Consensus 331 ~~~~~~~~ 338 (345)
++--+..+
T Consensus 151 ~~~~~~l~ 158 (161)
T COG3265 151 AQALAWLK 158 (161)
T ss_pred HHHHHHHh
Confidence 87555444
No 17
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.70 E-value=4.1e-17 Score=145.98 Aligned_cols=124 Identities=19% Similarity=0.141 Sum_probs=105.3
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHH-----HHHH-cCchhhhhhccChHHHHHHHHHHHHHHhcCCCEE
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL-----ETFA-KQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAV 259 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lI-----E~~~-g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~V 259 (345)
+..|+++|++||||||+|++|++.||++|+|+|+++ |++. |.++. +.+.|.|...+.....+++.+.+.+|
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~GipLn---D~DR~pWL~~i~~~~~~~l~~~q~vV 88 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIPLN---DDDRWPWLKKIAVELRKALASGQGVV 88 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCCCCC---cccccHHHHHHHHHHHHHhhcCCeEE
Confidence 457999999999999999999999999999999996 3332 44444 56789999999888888988888899
Q ss_pred EEcCCCCCcccCcHHHHHHHhc----C----------cEEEEEcChhhhchhhhhhhccccc---cccccceeeeee
Q 019172 260 VATLGGQQGAAARADKWQHLYA----G----------FTVWLSQTEAMGKLLRVFVLSLHLR---SVTSYFVRLEFV 319 (345)
Q Consensus 260 IAtGGG~~~avlr~~~r~~L~~----G----------~VV~Ld~s~a~~~~~Rv~v~~~h~R---~~~~~~~~le~i 319 (345)
+||++ ++..||+.|+. | .+|||.++.+++ ..|..-+..|.| .+.+||..||.+
T Consensus 89 lACSa------LKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi-~~Rl~~R~gHFMp~~lleSQf~~LE~p 158 (191)
T KOG3354|consen 89 LACSA------LKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVI-LKRLKKRKGHFMPADLLESQFATLEAP 158 (191)
T ss_pred EEhHH------HHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHH-HHHHhhcccccCCHHHHHHHHHhccCC
Confidence 99996 99999999973 1 589999998877 788777778888 678999999887
No 18
>PRK09169 hypothetical protein; Validated
Probab=99.66 E-value=2.6e-16 Score=179.22 Aligned_cols=122 Identities=12% Similarity=-0.002 Sum_probs=108.4
Q ss_pred hhcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEE
Q 019172 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVA 261 (345)
Q Consensus 182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIA 261 (345)
+.|.+.+|+|||+||+||||||+.||..|+++|+|+|..|++..|++|.+||..+| +||+.|.+.++++.. ..+||+
T Consensus 2106 ~rL~~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks~GrkI~rIFa~eG--~FRe~Eaa~V~Dllr-~~vVLS 2182 (2316)
T PRK09169 2106 ERLGAQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKKIGKKIARIQALRG--LSPEQAAARVRDALR-WEVVLP 2182 (2316)
T ss_pred HHHhhcccceeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHHhCCCHHHHHHhcC--chHHHHHHHHHHHhc-CCeEEe
Confidence 46778999999999999999999999999999999999999999999999999999 999999999999886 679999
Q ss_pred cCCCCCcccCcHHHHHHHh-cCcEEEEEcChhhhchhhhhhhcccccccccc
Q 019172 262 TLGGQQGAAARADKWQHLY-AGFTVWLSQTEAMGKLLRVFVLSLHLRSVTSY 312 (345)
Q Consensus 262 tGGG~~~avlr~~~r~~L~-~G~VV~Ld~s~a~~~~~Rv~v~~~h~R~~~~~ 312 (345)
+||| ++..+++|+.|+ +|.+|||..+.++. ..|+ .....|++...
T Consensus 2183 TGGG---av~~~enr~~L~~~GlvV~L~an~~tl-~~Rt--y~g~NRPLL~~ 2228 (2316)
T PRK09169 2183 AEGF---GAAVEQARQALGAKGLRVMRINNGFAA-PDTT--YAGLNVNLRTA 2228 (2316)
T ss_pred CCCC---cccCHHHHHHHHHCCEEEEEECCHHHH-HHHh--ccCCCCccccC
Confidence 9999 599999999997 89999999999865 4553 22345666543
No 19
>PRK03839 putative kinase; Provisional
Probab=99.51 E-value=4.1e-14 Score=124.83 Aligned_cols=96 Identities=18% Similarity=0.015 Sum_probs=74.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCCC
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ 266 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG~ 266 (345)
|.|+|+|+|||||||+|+.||+++|++|+|+|+++++. .+.+.+..+|+..|+.+|..+++.+. ..+ ||.+|.-
T Consensus 1 m~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~-vIidG~~- 74 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK---GIGEEKDDEMEIDFDKLAYFIEEEFK-EKN-VVLDGHL- 74 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc---CCcccCChhhhcCHHHHHHHHHHhcc-CCC-EEEEecc-
Confidence 46999999999999999999999999999999998753 46667777888899999998876543 334 5555531
Q ss_pred CcccCcHHHHHHHhcCcEEEEEcChhhhchhh
Q 019172 267 QGAAARADKWQHLYAGFTVWLSQTEAMGKLLR 298 (345)
Q Consensus 267 ~~avlr~~~r~~L~~G~VV~Ld~s~a~~~~~R 298 (345)
...+..+.+|||++++++. ..|
T Consensus 75 ---------~~l~~~~~vi~L~~~~~~~-~~R 96 (180)
T PRK03839 75 ---------SHLLPVDYVIVLRAHPKII-KER 96 (180)
T ss_pred ---------ccccCCCEEEEEECCHHHH-HHH
Confidence 1122468899999999876 444
No 20
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.42 E-value=1e-12 Score=113.84 Aligned_cols=101 Identities=16% Similarity=0.127 Sum_probs=75.8
Q ss_pred EEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHH-----H-HcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEc
Q 019172 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET-----F-AKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVAT 262 (345)
Q Consensus 189 IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~-----~-~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAt 262 (345)
|+|+|++||||||+|+.|++.+|+.++|.|++... . .|.... ...++++++.++..+...+..+..+||++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~Vi~~ 77 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLN---DDDRWPWLQNLNDASTAAAAKNKVGIITC 77 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCC---hhhHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 67999999999999999999999999999997432 1 133222 34567888888877776666665568877
Q ss_pred CCCCCcccCcHHHHHHHh-cC---cEEEEEcChhhhchhhh
Q 019172 263 LGGQQGAAARADKWQHLY-AG---FTVWLSQTEAMGKLLRV 299 (345)
Q Consensus 263 GGG~~~avlr~~~r~~L~-~G---~VV~Ld~s~a~~~~~Rv 299 (345)
+. +++.+|+.++ .+ .+|||+++.++. ..|.
T Consensus 78 t~------~~~~~r~~~~~~~~~~~~i~l~~~~e~~-~~R~ 111 (163)
T TIGR01313 78 SA------LKRHYRDILREAEPNLHFIYLSGDKDVI-LERM 111 (163)
T ss_pred cc------cHHHHHHHHHhcCCCEEEEEEeCCHHHH-HHHH
Confidence 53 6778888886 33 579999998865 5553
No 21
>PRK14530 adenylate kinase; Provisional
Probab=99.39 E-value=4.4e-12 Score=115.60 Aligned_cols=108 Identities=14% Similarity=0.083 Sum_probs=77.8
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChH---------HHHHHHHHHHHHHh-c
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSD---------SVVNGECDVLESLS-S 254 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee---------~FRelE~~vL~~L~-~ 254 (345)
.+.+|+|+|+|||||||+|+.||+.+|+++|++|+++++..++++.++....|.. ...+.+..++++.. .
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~~ 81 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALSD 81 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 3568999999999999999999999999999999999988876665544333322 22235556665543 3
Q ss_pred CCCEEEEcCCCCCcccCcHHHHHHHh----cCcEEEEEcChhhhchhhh
Q 019172 255 HVRAVVATLGGQQGAAARADKWQHLY----AGFTVWLSQTEAMGKLLRV 299 (345)
Q Consensus 255 ~~~~VIAtGGG~~~avlr~~~r~~L~----~G~VV~Ld~s~a~~~~~Rv 299 (345)
..++||. | + +.+.+.++.|. .+.+|||+++.++. ..|.
T Consensus 82 ~~~~Ild-G--~---pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l-~~Rl 123 (215)
T PRK14530 82 ADGFVLD-G--Y---PRNLEQAEYLESITDLDVVLYLDVSEEEL-VDRL 123 (215)
T ss_pred CCCEEEc-C--C---CCCHHHHHHHHHhcCCCEEEEEeCCHHHH-HHHH
Confidence 4556775 3 2 56666666663 47899999999866 4453
No 22
>PRK06217 hypothetical protein; Validated
Probab=99.39 E-value=1.4e-12 Score=116.17 Aligned_cols=98 Identities=18% Similarity=0.130 Sum_probs=67.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCCC
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ 266 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG~ 266 (345)
++|+|+|++||||||+|+.||+.||++++|+|+++++..+.+.. ..+... +.+..+++.+....++||+ |+
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~vi~-G~-- 72 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTDPPFT----TKRPPE--ERLRLLLEDLRPREGWVLS-GS-- 72 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCCCCcc----ccCCHH--HHHHHHHHHHhcCCCEEEE-cc--
Confidence 57999999999999999999999999999999999865443311 123332 2244555556555677887 33
Q ss_pred CcccCcHHHHHHH-h-cCcEEEEEcChhhhchhhh
Q 019172 267 QGAAARADKWQHL-Y-AGFTVWLSQTEAMGKLLRV 299 (345)
Q Consensus 267 ~~avlr~~~r~~L-~-~G~VV~Ld~s~a~~~~~Rv 299 (345)
... ..+.+ . .+.+|||++|.++. ..|.
T Consensus 73 ---~~~--~~~~~~~~~d~~i~Ld~~~~~~-~~Rl 101 (183)
T PRK06217 73 ---ALG--WGDPLEPLFDLVVFLTIPPELR-LERL 101 (183)
T ss_pred ---HHH--HHHHHHhhCCEEEEEECCHHHH-HHHH
Confidence 222 22223 2 68899999999866 4443
No 23
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.30 E-value=2.2e-12 Score=115.14 Aligned_cols=109 Identities=13% Similarity=0.060 Sum_probs=81.2
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHH---------------
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLE--------------- 250 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~--------------- 250 (345)
+..|+|+|++|||||||+++||..++.++++.|..+.....+...+++...+++.|+..|...+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~~ 81 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGIE 81 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcHH
Confidence 46799999999999999999999999999999998887666566677777788888887655442
Q ss_pred --HHhcCCCEEEEcCCCCCcccCcHHHHHHHh-cCcEEEEEcChhhhchhhh
Q 019172 251 --SLSSHVRAVVATLGGQQGAAARADKWQHLY-AGFTVWLSQTEAMGKLLRV 299 (345)
Q Consensus 251 --~L~~~~~~VIAtGGG~~~avlr~~~r~~L~-~G~VV~Ld~s~a~~~~~Rv 299 (345)
+..+....||+.|++ ......++.+. .+.+|||++|.++. ..|.
T Consensus 82 ~~~~l~~g~~VI~~G~~----~~~~~~~~~~~~~~~vi~l~~s~e~l-~~RL 128 (186)
T PRK10078 82 IDLWLHAGFDVLVNGSR----AHLPQARARYQSALLPVCLQVSPEIL-RQRL 128 (186)
T ss_pred HHHHHhCCCEEEEeChH----HHHHHHHHHcCCCEEEEEEeCCHHHH-HHHH
Confidence 122334567777765 34455566554 57799999998865 5554
No 24
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=99.29 E-value=2.4e-12 Score=127.14 Aligned_cols=92 Identities=21% Similarity=0.207 Sum_probs=73.9
Q ss_pred EEEEcCCCCChHHHHHHHHHhhCCc------eeeCcHHH-----HHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCC
Q 019172 189 IFLVGDSTEVNEKVALELAVGLGYT------PLSTKELL-----ETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVR 257 (345)
Q Consensus 189 IvLIG~~GSGKSTVAk~LA~~Lg~~------fID~D~lI-----E~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~ 257 (345)
++|+|++||||||+|+.|++.|+.. ++|.|++| +...|+++++++ ..||+.-.+.|+ +
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~-----k~~R~~i~~~le------~ 70 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQW-----KQFRQELLKYLE------H 70 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHH-----HHHHHHHHHHHH------H
Confidence 5799999999999999999998754 99999999 888899999886 568843333333 4
Q ss_pred EEEEcCCCCCcccC----------cHHHHHHHh-cCcEEEEEcChhhh
Q 019172 258 AVVATLGGQQGAAA----------RADKWQHLY-AGFTVWLSQTEAMG 294 (345)
Q Consensus 258 ~VIAtGGG~~~avl----------r~~~r~~L~-~G~VV~Ld~s~a~~ 294 (345)
.|+|+||| +.+ ++++++.|+ .|.+|||+++.+..
T Consensus 71 ~v~a~~~g---~~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~ 115 (340)
T TIGR03575 71 FLVAVING---SELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQG 115 (340)
T ss_pred HHHHhcCc---ccccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHH
Confidence 58899998 465 555668887 79999999998754
No 25
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.29 E-value=2.3e-11 Score=103.79 Aligned_cols=103 Identities=17% Similarity=0.035 Sum_probs=73.4
Q ss_pred EEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH------cCchhhhhhccChHHHHHHHHHHHHHHh-cCCCEEEE
Q 019172 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLESLS-SHVRAVVA 261 (345)
Q Consensus 189 IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~------g~sI~ei~~~~Gee~FRelE~~vL~~L~-~~~~~VIA 261 (345)
|+|+|++||||||+|+.|++.++..++|.|+++.... |... -..+++.++++....+...+. .+..+||.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~vVid 78 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPL---NDEDRWPWLQALTDALLAKLASAGEGVVVA 78 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCC---CccchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence 7899999999999999999999999999999886421 2221 223467778887766665554 44556766
Q ss_pred cCCCCCcccCcHHHHHHHhc------CcEEEEEcChhhhchhhhhh
Q 019172 262 TLGGQQGAAARADKWQHLYA------GFTVWLSQTEAMGKLLRVFV 301 (345)
Q Consensus 262 tGGG~~~avlr~~~r~~L~~------G~VV~Ld~s~a~~~~~Rv~v 301 (345)
+++ ....+|+.++. -.+|||+++.++. ..|...
T Consensus 79 ~~~------~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~-~~R~~~ 117 (150)
T cd02021 79 CSA------LKRIYRDILRGGAANPRVRFVHLDGPREVL-AERLAA 117 (150)
T ss_pred ecc------ccHHHHHHHHhcCCCCCEEEEEEECCHHHH-HHHHHh
Confidence 554 45667777762 2599999998865 555433
No 26
>PRK14532 adenylate kinase; Provisional
Probab=99.28 E-value=2.4e-11 Score=107.70 Aligned_cols=102 Identities=16% Similarity=0.098 Sum_probs=71.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH------HcCchhhhhhccChHHHHHHHHHHHHHHhcC---CC
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLSSH---VR 257 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~------~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~---~~ 257 (345)
|+|+|+|+|||||||+|+.||+.+|+++|++|+++.+. .|..+.+++. .|+..+.+.-..++.+.... .+
T Consensus 1 ~~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~ 79 (188)
T PRK14532 1 MNLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMD-RGELVSDEIVIALIEERLPEAEAAG 79 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHH-CCCccCHHHHHHHHHHHHhCcCccC
Confidence 47999999999999999999999999999999999875 3445667766 58777777666666553322 12
Q ss_pred EEEEcCCCCCcccCcHHHHH----HHh-cC----cEEEEEcChhhh
Q 019172 258 AVVATLGGQQGAAARADKWQ----HLY-AG----FTVWLSQTEAMG 294 (345)
Q Consensus 258 ~VIAtGGG~~~avlr~~~r~----~L~-~G----~VV~Ld~s~a~~ 294 (345)
.+|-.|- +-+.+.++ .+. .| .+|||++|.++.
T Consensus 80 g~vldg~-----pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~ 120 (188)
T PRK14532 80 GAIFDGF-----PRTVAQAEALDKMLASRGQKIDVVIRLKVDDEAL 120 (188)
T ss_pred cEEEeCC-----CCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH
Confidence 2232221 33333333 333 33 699999998865
No 27
>PRK04182 cytidylate kinase; Provisional
Probab=99.23 E-value=3.4e-11 Score=104.41 Aligned_cols=97 Identities=18% Similarity=0.219 Sum_probs=65.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHH---HHcCchhhhhhccChHHH---HHHHHHHHHHHh-cCCCEE
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET---FAKQTIDSWMLAEGSDSV---VNGECDVLESLS-SHVRAV 259 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~---~~g~sI~ei~~~~Gee~F---RelE~~vL~~L~-~~~~~V 259 (345)
|.|+|+|++||||||+|+.||+.||++++|+|+++.+ ..|+++.++.+ .++..+ +.++..+ ..+. ...++|
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~V 78 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFNK-YAEEDPEIDKEIDRRQ-LEIAEKEDNVV 78 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHHH-HhhcCchHHHHHHHHH-HHHHhcCCCEE
Confidence 4699999999999999999999999999999887655 34677776653 344333 3344333 3444 445566
Q ss_pred EEcC-CCCCcccCcHHHHHHHhcCcEEEEEcChhhh
Q 019172 260 VATL-GGQQGAAARADKWQHLYAGFTVWLSQTEAMG 294 (345)
Q Consensus 260 IAtG-GG~~~avlr~~~r~~L~~G~VV~Ld~s~a~~ 294 (345)
|... ++ ....+ ..+.+|||++|.+..
T Consensus 79 i~g~~~~---~~~~~------~~~~~V~l~a~~e~~ 105 (180)
T PRK04182 79 LEGRLAG---WMAKD------YADLKIWLKAPLEVR 105 (180)
T ss_pred EEEeecc---eEecC------CCCEEEEEECCHHHH
Confidence 6421 22 12211 157899999998754
No 28
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.19 E-value=8.9e-11 Score=103.23 Aligned_cols=101 Identities=24% Similarity=0.151 Sum_probs=68.0
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHH----HHHH-Hhc
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECD----VLES-LSS 254 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~----vL~~-L~~ 254 (345)
++..|+|+|++||||||+|+.|++.|+ ..++|.|.+.+. +...|.+.+.+.|.. .+.+ +..
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~---------~~~~~~~~~~~~~~~~~~~~l~~~l~~ 76 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREI---------LGHYGYDKQSRIEMALKRAKLAKFLAD 76 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhh---------cCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 567899999999999999999999996 789998886442 222333334333322 2222 434
Q ss_pred CCCEEEEcCCCCCccc--CcHHHHHHHhcCcEEEEEcChhhhchhh
Q 019172 255 HVRAVVATLGGQQGAA--ARADKWQHLYAGFTVWLSQTEAMGKLLR 298 (345)
Q Consensus 255 ~~~~VIAtGGG~~~av--lr~~~r~~L~~G~VV~Ld~s~a~~~~~R 298 (345)
.+..||++|++. . ++..++..+....+|||++++++. ..|
T Consensus 77 ~g~~VI~~~~~~---~~~~~~~~~~~~~~~~~v~l~~~~e~~-~~R 118 (176)
T PRK05541 77 QGMIVIVTTISM---FDEIYAYNRKHLPNYFEVYLKCDMEEL-IRR 118 (176)
T ss_pred CCCEEEEEeCCc---HHHHHHHHHhhcCCeEEEEEeCCHHHH-HHh
Confidence 456788887762 3 444555555556799999998865 444
No 29
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.15 E-value=7.3e-11 Score=123.44 Aligned_cols=103 Identities=16% Similarity=0.166 Sum_probs=67.5
Q ss_pred hhcCCceEEEEcCCCCChHHHHHHHHHhhCC------ceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHH------
Q 019172 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGY------TPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVL------ 249 (345)
Q Consensus 182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~------~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL------ 249 (345)
+..++..|+|+|+|||||||||+.||++|+. .++|+|.+...+. |+..|++.|++..
T Consensus 388 r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~-----------ge~~f~~~er~~~~~~l~~ 456 (568)
T PRK05537 388 RHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLS-----------SELGFSKEDRDLNILRIGF 456 (568)
T ss_pred ccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhcc-----------CCCCCCHHHHHHHHHHHHH
Confidence 3456779999999999999999999999997 9999998743332 3344555554322
Q ss_pred --HHHhcCCCEEEEc-CCCCCcccCcHHHHHHHh-cC--cEEEEEcChhhhchhh
Q 019172 250 --ESLSSHVRAVVAT-LGGQQGAAARADKWQHLY-AG--FTVWLSQTEAMGKLLR 298 (345)
Q Consensus 250 --~~L~~~~~~VIAt-GGG~~~avlr~~~r~~L~-~G--~VV~Ld~s~a~~~~~R 298 (345)
..+.+.+..||.. -... ...++++|+.++ .| .+|||+++.++. ..|
T Consensus 457 ~a~~v~~~Gg~vI~~~~~p~--~~~R~~nr~llk~~g~fivV~L~~p~e~l-~~R 508 (568)
T PRK05537 457 VASEITKNGGIAICAPIAPY--RATRREVREMIEAYGGFIEVHVATPLEVC-EQR 508 (568)
T ss_pred HHHHHHhCCCEEEEEeCCch--HHHHHHHHHHHhhcCCEEEEEEcCCHHHH-HHh
Confidence 1222223333322 1110 124578888887 35 589999998865 444
No 30
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.14 E-value=2.2e-10 Score=108.32 Aligned_cols=108 Identities=11% Similarity=0.018 Sum_probs=69.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhh-CCceeeCcHHHHHHHcCch-hh-hhhccChHHHHHHHHHHHHHHhc-CCCEEEEc
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGL-GYTPLSTKELLETFAKQTI-DS-WMLAEGSDSVVNGECDVLESLSS-HVRAVVAT 262 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~L-g~~fID~D~lIE~~~g~sI-~e-i~~~~Gee~FRelE~~vL~~L~~-~~~~VIAt 262 (345)
+.|+|+|+|||||||+|+.|++.+ ++.++|.|++.+...+... .. .+..++++.+++.....++++.. +..+||++
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~vIid~ 82 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKSVIISD 82 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCeEEEeC
Confidence 468889999999999999999999 9999999998776654221 11 12223445555566566555543 34456654
Q ss_pred CCCCCcccCcHHHHHHH----h-cCc---EEEEEcChhhhchhhhhh
Q 019172 263 LGGQQGAAARADKWQHL----Y-AGF---TVWLSQTEAMGKLLRVFV 301 (345)
Q Consensus 263 GGG~~~avlr~~~r~~L----~-~G~---VV~Ld~s~a~~~~~Rv~v 301 (345)
.. .+++.++.+ + .+. +|||+++.+.. ..|...
T Consensus 83 ~~------~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~-~~R~~~ 122 (300)
T PHA02530 83 TN------LNPERRRKWKELAKELGAEFEEKVFDVPVEEL-VKRNRK 122 (300)
T ss_pred CC------CCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHH-HHHHHc
Confidence 44 334444332 2 232 78999987755 555433
No 31
>PRK08118 topology modulation protein; Reviewed
Probab=99.13 E-value=2e-10 Score=102.03 Aligned_cols=95 Identities=17% Similarity=0.141 Sum_probs=62.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHH-HHHHHHHHHhcCCCEEEEcCCC
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVN-GECDVLESLSSHVRAVVATLGG 265 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRe-lE~~vL~~L~~~~~~VIAtGGG 265 (345)
++|+|+|++||||||+|+.|++.+|+++++.|+++++. ||....+ ...++++++..+.++||. |..
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~------------~w~~~~~~~~~~~~~~~~~~~~wVid-G~~ 68 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP------------NWEGVPKEEQITVQNELVKEDEWIID-GNY 68 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc------------CCcCCCHHHHHHHHHHHhcCCCEEEe-CCc
Confidence 57999999999999999999999999999999998641 2211111 223345555655667764 321
Q ss_pred CCcccCcHHHHHHH-hcCcEEEEEcChhhhchhhhhh
Q 019172 266 QQGAAARADKWQHL-YAGFTVWLSQTEAMGKLLRVFV 301 (345)
Q Consensus 266 ~~~avlr~~~r~~L-~~G~VV~Ld~s~a~~~~~Rv~v 301 (345)
.-.- ...+ ..+.+|||++|..+. ..|+..
T Consensus 69 ----~~~~--~~~l~~~d~vi~Ld~p~~~~-~~R~~~ 98 (167)
T PRK08118 69 ----GGTM--DIRLNAADTIIFLDIPRTIC-LYRAFK 98 (167)
T ss_pred ----chHH--HHHHHhCCEEEEEeCCHHHH-HHHHHH
Confidence 0001 1123 378999999998755 344333
No 32
>PRK06547 hypothetical protein; Provisional
Probab=99.11 E-value=5.5e-11 Score=106.61 Aligned_cols=118 Identities=18% Similarity=0.170 Sum_probs=76.6
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCc-----hhhhhhccChHHHHHH--HHHHHHH--HhcC
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQT-----IDSWMLAEGSDSVVNG--ECDVLES--LSSH 255 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~s-----I~ei~~~~Gee~FRel--E~~vL~~--L~~~ 255 (345)
..+.|.|.|++||||||+|+.||+.++++++++|+++....+.+ +.+.+.+.|+..++.. ....... ....
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~~~~l~~ 93 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHGLAAASEHVAEAVLDEGRPGRWRWDWANNRPGDWVSVEP 93 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecccccCChHHHHHHHHHHhCCCCceecCCCCCCCCCCcEEeCC
Confidence 34567778999999999999999999999999999886433322 2233333454433220 0000001 1122
Q ss_pred CCEEEEcCCCCCcccCcHHHHHHHh-cC--cEEEEEcChhhhchhhhhhhccccc
Q 019172 256 VRAVVATLGGQQGAAARADKWQHLY-AG--FTVWLSQTEAMGKLLRVFVLSLHLR 307 (345)
Q Consensus 256 ~~~VIAtGGG~~~avlr~~~r~~L~-~G--~VV~Ld~s~a~~~~~Rv~v~~~h~R 307 (345)
.+.||..|+| .+.+++++.+. .| ..|||++|.++. ..|...++.|.+
T Consensus 94 ~~vVIvEG~~----al~~~~r~~~d~~g~v~~I~ld~~~~vr-~~R~~~Rd~~~~ 143 (172)
T PRK06547 94 GRRLIIEGVG----SLTAANVALASLLGEVLTVWLDGPEALR-KERALARDPDYA 143 (172)
T ss_pred CCeEEEEehh----hccHHHHHHhccCCCEEEEEEECCHHHH-HHHHHhcCchhh
Confidence 4578888887 46788888885 45 689999999866 555555444433
No 33
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.09 E-value=5.7e-10 Score=100.75 Aligned_cols=97 Identities=23% Similarity=0.331 Sum_probs=70.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH---cCchhhh--hhccChHHHHHHHHHHHHHHhcCCCEEE-
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTIDSW--MLAEGSDSVVNGECDVLESLSSHVRAVV- 260 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~---g~sI~ei--~~~~Gee~FRelE~~vL~~L~~~~~~VI- 260 (345)
+.|.|.|+|||||||+++.||+.||++++.+..++.+++ ||++.++ ++++..+.-.+..+...+ +..+.++||
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~rq~e-~a~~~nvVle 79 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDRRQKE-LAKEGNVVLE 79 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHHHHHH-HHHcCCeEEh
Confidence 468999999999999999999999999999999987765 8998887 344455555555554443 334677777
Q ss_pred EcCCCCCcccCcHHHHHHH-hcCcEEEEEcChhhh
Q 019172 261 ATLGGQQGAAARADKWQHL-YAGFTVWLSQTEAMG 294 (345)
Q Consensus 261 AtGGG~~~avlr~~~r~~L-~~G~VV~Ld~s~a~~ 294 (345)
+-.+| |-.- .+...|||.+|..+-
T Consensus 80 grLA~----------Wi~k~~adlkI~L~Apl~vR 104 (179)
T COG1102 80 GRLAG----------WIVREYADLKIWLKAPLEVR 104 (179)
T ss_pred hhhHH----------HHhccccceEEEEeCcHHHH
Confidence 23333 2221 268899999998743
No 34
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.06 E-value=1.9e-09 Score=101.07 Aligned_cols=124 Identities=10% Similarity=0.056 Sum_probs=80.2
Q ss_pred cCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcC------chhhhhhccCh----HHHHHHHHHHHHHH-
Q 019172 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ------TIDSWMLAEGS----DSVVNGECDVLESL- 252 (345)
Q Consensus 184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~------sI~ei~~~~Ge----e~FRelE~~vL~~L- 252 (345)
..+++|+|+|+|||||||+|+.||+.+|+++|++|+++++..+. .+.+++.. |. +.+.++-.+.+.++
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~-G~lvpd~iv~~lv~~~l~~~~ 82 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTS-GNLVPDNLVIAIVKDEIAKVT 82 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHc-CCcCCHHHHHHHHHHHHHhhc
Confidence 35678999999999999999999999999999999999875432 24444433 32 44444444444443
Q ss_pred hcCCCEEEEcCCCCCcccCcHHHHHHHh----cCcEEEEEcChhhhchhhhhhhccccccccccce
Q 019172 253 SSHVRAVVATLGGQQGAAARADKWQHLY----AGFTVWLSQTEAMGKLLRVFVLSLHLRSVTSYFV 314 (345)
Q Consensus 253 ~~~~~~VIAtGGG~~~avlr~~~r~~L~----~G~VV~Ld~s~a~~~~~Rv~v~~~h~R~~~~~~~ 314 (345)
......+|-.|- +-+......|. -..+|+|+.+.++. ..|..-++.+......|+.
T Consensus 83 ~~~~~g~iLDGf-----PRt~~Qa~~l~~~~~~~~vi~l~~~~~~~-~~Rl~~Rr~~~~~g~~y~~ 142 (229)
T PTZ00088 83 DDCFKGFILDGF-----PRNLKQCKELGKITNIDLFVNIYLPRNIL-IKKLLGRRICNTCNRNFNI 142 (229)
T ss_pred cccCceEEEecC-----CCCHHHHHHHHhcCCCCEEEEEeCCHHHH-HHHHHcCcCCCccCCccee
Confidence 222334444443 44444445443 25689999998865 5665555555555555554
No 35
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.05 E-value=2.8e-09 Score=97.15 Aligned_cols=125 Identities=13% Similarity=0.058 Sum_probs=78.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH------cCchhhhhhccChHHHHHHHHHHHHH-Hhc---CC
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLES-LSS---HV 256 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~------g~sI~ei~~~~Gee~FRelE~~vL~~-L~~---~~ 256 (345)
+.|+|+|+|||||||+|+.||+.+|++++++++++.+.. |..+.+++. .|.....+....++.+ +.. ..
T Consensus 1 ~~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~-~g~~~p~~~~~~~i~~~l~~~~~~~ 79 (215)
T PRK00279 1 MRLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMD-AGELVPDEIVIGLVKERLAQPDCKN 79 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHH-cCCcCCHHHHHHHHHHHHhccCccC
Confidence 469999999999999999999999999999999987653 223444443 3443334444444433 332 23
Q ss_pred CEEEEcCCCCCcccCcHHHHHHH----h-c----CcEEEEEcChhhhchhhhhhhccccccccccceeeeee
Q 019172 257 RAVVATLGGQQGAAARADKWQHL----Y-A----GFTVWLSQTEAMGKLLRVFVLSLHLRSVTSYFVRLEFV 319 (345)
Q Consensus 257 ~~VIAtGGG~~~avlr~~~r~~L----~-~----G~VV~Ld~s~a~~~~~Rv~v~~~h~R~~~~~~~~le~i 319 (345)
++||. |- +-+.+..+.| . . ..+|||+++.++. ..|..-+..+......|+.....+
T Consensus 80 g~VlD-Gf-----Pr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~-~~Rl~~R~~~~~~g~~~~~~~~~p 144 (215)
T PRK00279 80 GFLLD-GF-----PRTIPQAEALDEMLKELGIKLDAVIEIDVPDEEL-VERLSGRRICPACGRTYHVKFNPP 144 (215)
T ss_pred CEEEe-cC-----CCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHH-HHHHhCCcccCccCCcccccCCCC
Confidence 45554 32 4555444444 2 1 3699999998865 555444444444445555544444
No 36
>PLN02674 adenylate kinase
Probab=99.04 E-value=3.4e-09 Score=100.55 Aligned_cols=128 Identities=11% Similarity=0.025 Sum_probs=88.4
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH------HcCchhhhhhccChHHHHHHHHHHHHHHhcCC--
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLSSHV-- 256 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~------~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~-- 256 (345)
..++|+|+|+|||||+|+|+.||+.+|+++|++++++.+. .|..+.+++. .|+....++...++.+.....
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~-~G~lvpd~iv~~lv~~~l~~~~~ 108 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMD-KGELVSDDLVVGIIDEAMKKPSC 108 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHH-cCCccCHHHHHHHHHHHHhCcCc
Confidence 3578999999999999999999999999999999999876 4556777775 799999999888877754331
Q ss_pred -CEEEEcCCCCCcccCcHHHHHHH----h-c----CcEEEEEcChhhhchhhhhhhccccccccccceeeeee
Q 019172 257 -RAVVATLGGQQGAAARADKWQHL----Y-A----GFTVWLSQTEAMGKLLRVFVLSLHLRSVTSYFVRLEFV 319 (345)
Q Consensus 257 -~~VIAtGGG~~~avlr~~~r~~L----~-~----G~VV~Ld~s~a~~~~~Rv~v~~~h~R~~~~~~~~le~i 319 (345)
+.+|-.|- +-+...-+.| . . ..||+|+++.++. ..|..-++.+......|+.....+
T Consensus 109 ~~g~ilDGf-----PRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l-~~Rl~gR~~~~~~g~~yn~~~~pp 175 (244)
T PLN02674 109 QKGFILDGF-----PRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAIL-EERITGRWIHPSSGRTYHTKFAPP 175 (244)
T ss_pred CCcEEEeCC-----CCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-HHHHhccccccccCCccccccCCC
Confidence 22332332 4443333322 2 1 4699999999876 455444444444455555544443
No 37
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.03 E-value=2.4e-09 Score=95.91 Aligned_cols=112 Identities=12% Similarity=0.072 Sum_probs=71.9
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH------HcCchhhhhhccChHHHHHHHHHHHHHHhcCCCE
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRA 258 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~------~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~ 258 (345)
.+..|+|+|++||||||+++.|+..++..++|+|++.... .|....+ .....+...+...+...+....+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g 78 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQGIPLTD---EDRLPWLERLNDASYSLYKKNETG 78 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHhcCCCCCc---ccchHHHHHHHHHHHHHHhcCCCE
Confidence 4678999999999999999999999999999999964321 1222221 122233344433332222222345
Q ss_pred EEEcCCCCCcccCcHHHHHHHh-cC---cEEEEEcChhhhchhhhhhhcccc
Q 019172 259 VVATLGGQQGAAARADKWQHLY-AG---FTVWLSQTEAMGKLLRVFVLSLHL 306 (345)
Q Consensus 259 VIAtGGG~~~avlr~~~r~~L~-~G---~VV~Ld~s~a~~~~~Rv~v~~~h~ 306 (345)
+|+|+. +++.+|+.++ .+ .+|||+++.++. ..|+..+..|.
T Consensus 79 ~iv~s~------~~~~~R~~~r~~~~~~~~v~l~a~~~~l-~~Rl~~R~~~~ 123 (176)
T PRK09825 79 FIVCSS------LKKQYRDILRKSSPNVHFLWLDGDYETI-LARMQRRAGHF 123 (176)
T ss_pred EEEEEe------cCHHHHHHHHhhCCCEEEEEEeCCHHHH-HHHHhcccCCC
Confidence 565553 7888888887 33 589999999876 55654444343
No 38
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.03 E-value=1.6e-09 Score=95.07 Aligned_cols=100 Identities=15% Similarity=0.218 Sum_probs=67.1
Q ss_pred EEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHc------CchhhhhhccChHHHHHHHHHHHHHHhcC--CCEEE
Q 019172 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK------QTIDSWMLAEGSDSVVNGECDVLESLSSH--VRAVV 260 (345)
Q Consensus 189 IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g------~sI~ei~~~~Gee~FRelE~~vL~~L~~~--~~~VI 260 (345)
|+|+|+|||||||+|+.||+.+|+.++++|+++.+... ..+.+++ ..|...-.++...++++.... .+.+|
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~ll~~~~~~~~~~~~v 80 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMI-KNGKIVPSEVTVKLLKNAIQADGSKKFL 80 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHH-HCCCcCCHHHHHHHHHHHHhccCCCcEE
Confidence 78999999999999999999999999999998876542 1234443 356666666656666554332 23344
Q ss_pred EcCCCCCcccCcHHHHHHH----h----cCcEEEEEcChhhh
Q 019172 261 ATLGGQQGAAARADKWQHL----Y----AGFTVWLSQTEAMG 294 (345)
Q Consensus 261 AtGGG~~~avlr~~~r~~L----~----~G~VV~Ld~s~a~~ 294 (345)
-.|- +-+.+.++.+ . -..+|||++|.++.
T Consensus 81 lDg~-----p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~ 117 (183)
T TIGR01359 81 IDGF-----PRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVM 117 (183)
T ss_pred EeCC-----CCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHH
Confidence 3442 3444444322 1 14699999999864
No 39
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.01 E-value=2.5e-09 Score=94.16 Aligned_cols=104 Identities=17% Similarity=0.140 Sum_probs=65.6
Q ss_pred eEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHc------CchhhhhhccChHHHHHHHHHHHHH-Hhc---CCC
Q 019172 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK------QTIDSWMLAEGSDSVVNGECDVLES-LSS---HVR 257 (345)
Q Consensus 188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g------~sI~ei~~~~Gee~FRelE~~vL~~-L~~---~~~ 257 (345)
+|+|+|++||||||+|+.||+.+|++++++|+++.+... ..+.+.+.. |...-.++...++.. +.. ..+
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~l~~~~l~~~~~~~~ 79 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDS-GKLVPDEIVIKLLKERLKKPDCKKG 79 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHc-CCccCHHHHHHHHHHHHhcccccCC
Confidence 489999999999999999999999999999999877542 223333332 322223333333333 322 234
Q ss_pred EEEEcCCCCCcccCcHHHHHHHh--------cCcEEEEEcChhhhchhhh
Q 019172 258 AVVATLGGQQGAAARADKWQHLY--------AGFTVWLSQTEAMGKLLRV 299 (345)
Q Consensus 258 ~VIAtGGG~~~avlr~~~r~~L~--------~G~VV~Ld~s~a~~~~~Rv 299 (345)
+||. |- +-+....+.+. -..+|||+++.++. ..|.
T Consensus 80 ~vld-g~-----Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~-~~Rl 122 (194)
T cd01428 80 FILD-GF-----PRTVDQAEALDELLDEGIKPDKVIELDVPDEVL-IERI 122 (194)
T ss_pred EEEe-CC-----CCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-HHHH
Confidence 5554 32 33444444442 14699999999865 4553
No 40
>PRK13975 thymidylate kinase; Provisional
Probab=99.01 E-value=2e-10 Score=101.92 Aligned_cols=106 Identities=20% Similarity=0.121 Sum_probs=67.7
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhC--CceeeCcHHHHHH----H------cCchhhhhhccChHHHHHHHHHHHHHHh
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLG--YTPLSTKELLETF----A------KQTIDSWMLAEGSDSVVNGECDVLESLS 253 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg--~~fID~D~lIE~~----~------g~sI~ei~~~~Gee~FRelE~~vL~~L~ 253 (345)
++-|+|.|++||||||+++.||+.|+ +.+.+.|..+.+. . +.++..+|..++++.|+++|..+.+
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~~~~g~~ir~~~~~~~~~~~~~~~~f~~~r~~~~~~i~~~~~~--- 78 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKLIREILSGSKCDKETLALLFAADRVEHVKEIEEDLKK--- 78 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeeECCCCChHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHcC---
Confidence 36799999999999999999999999 6667777655432 1 2234557777888888776654322
Q ss_pred cCCCEEEE-----------cCCCCCcccCcHHHHHHHhcCcEEEEEcChhhhchhh
Q 019172 254 SHVRAVVA-----------TLGGQQGAAARADKWQHLYAGFTVWLSQTEAMGKLLR 298 (345)
Q Consensus 254 ~~~~~VIA-----------tGGG~~~avlr~~~r~~L~~G~VV~Ld~s~a~~~~~R 298 (345)
+.||+ +++|.-.-.+...++..++.+.+|||+++++.. ..|
T Consensus 79 ---~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e~~-~~R 130 (196)
T PRK13975 79 ---RDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIEEA-LKR 130 (196)
T ss_pred ---CEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHHHH-HHH
Confidence 33444 244420000111222223457899999999865 444
No 41
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.01 E-value=1.3e-09 Score=96.25 Aligned_cols=105 Identities=12% Similarity=-0.027 Sum_probs=67.8
Q ss_pred EcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH--HcCchhhhhh-ccChHHHHHHHHHHHHHHhcCCCEEEEcCCCCCc
Q 019172 192 VGDSTEVNEKVALELAVGLGYTPLSTKELLETF--AKQTIDSWML-AEGSDSVVNGECDVLESLSSHVRAVVATLGGQQG 268 (345)
Q Consensus 192 IG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~--~g~sI~ei~~-~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG~~~ 268 (345)
+|++||||||+++.||..+|..++|+|.+.... .++....-+. ...+.+...++..+...+......||.++.
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv~s~---- 76 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSA---- 76 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHHHHHcCCceEEEEec----
Confidence 699999999999999999999999999864221 1111111111 222455555555554444444445565543
Q ss_pred ccCcHHHHHHHh-cC---cEEEEEcChhhhchhhhhhhc
Q 019172 269 AAARADKWQHLY-AG---FTVWLSQTEAMGKLLRVFVLS 303 (345)
Q Consensus 269 avlr~~~r~~L~-~G---~VV~Ld~s~a~~~~~Rv~v~~ 303 (345)
++..+|+.++ .+ .+|||+++.++. ..|+..+.
T Consensus 77 --~~~~~r~~~~~~~~~~~~v~l~a~~~~l-~~Rl~~R~ 112 (163)
T PRK11545 77 --LKKHYRDLLREGNPNLSFIYLKGDFDVI-ESRLKARK 112 (163)
T ss_pred --chHHHHHHHHccCCCEEEEEEECCHHHH-HHHHHhcc
Confidence 6777888887 33 489999999876 55644443
No 42
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.01 E-value=9e-10 Score=92.31 Aligned_cols=103 Identities=21% Similarity=0.180 Sum_probs=63.6
Q ss_pred EEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhh-hccChHHHHHHHHHHHHH-HhcCCCEEEEcCCCC
Q 019172 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWM-LAEGSDSVVNGECDVLES-LSSHVRAVVATLGGQ 266 (345)
Q Consensus 189 IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~-~~~Gee~FRelE~~vL~~-L~~~~~~VIAtGGG~ 266 (345)
|+++|++||||||+++.|++.+++.+|+.|++..+..+...+... ..+-.+.+.+.-.+.++. +..+..+||..+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vvd~~~-- 79 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVVDNTN-- 79 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEEESS---
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCceeccCc--
Confidence 789999999999999999999999999999998877763322211 011112222233334444 3444456665333
Q ss_pred CcccCcHHHHHHH----h-cC---cEEEEEcChhhhchhh
Q 019172 267 QGAAARADKWQHL----Y-AG---FTVWLSQTEAMGKLLR 298 (345)
Q Consensus 267 ~~avlr~~~r~~L----~-~G---~VV~Ld~s~a~~~~~R 298 (345)
.....|+.+ + .| .+|||+++.++. ..|
T Consensus 80 ----~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~-~~R 114 (143)
T PF13671_consen 80 ----LSREERARLRELARKHGYPVRVVYLDAPEETL-RER 114 (143)
T ss_dssp -----SHHHHHHHHHHHHHCTEEEEEEEECHHHHHH-HHH
T ss_pred ----CCHHHHHHHHHHHHHcCCeEEEEEEECCHHHH-HHH
Confidence 333444433 3 35 588999888765 444
No 43
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=98.97 E-value=1.4e-09 Score=89.30 Aligned_cols=89 Identities=17% Similarity=0.355 Sum_probs=74.9
Q ss_pred CCCCCcceEEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeecccc-
Q 019172 74 IPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQ- 152 (345)
Q Consensus 74 ~~~~~~~y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd~~- 152 (345)
+|..++.|.|+|+..||++++++|. ...++|+.|++..++|.+.+.+. .+|+ ++||.+|.|.|+.|.++|..
T Consensus 1 ~~~~~~~y~W~QT~~eV~v~i~lp~--~~~~kdv~V~i~~~~l~V~~~g~----~~l~-G~L~~~I~~destWtled~k~ 73 (93)
T cd06494 1 VPCKTPWGCWYQTMDEVFIEVNVPP--GTRAKDVKCKLGSRDISLAVKGQ----EVLK-GKLFDSVVADECTWTLEDRKL 73 (93)
T ss_pred CCccCCCcEEEeEcCEEEEEEECCC--CCceeeEEEEEEcCEEEEEECCE----EEEc-CcccCccCcccCEEEEECCcE
Confidence 3678999999999999999999997 45799999999999999998653 2566 99999999999999999987
Q ss_pred eeehccccCC--CCCcchh
Q 019172 153 LVINLKKQDP--ELKWPDI 169 (345)
Q Consensus 153 ~~~~~k~~~~--~~~~~~~ 169 (345)
+.|.+.|... +..|+.+
T Consensus 74 l~I~L~K~~~~~~~~W~sl 92 (93)
T cd06494 74 IRIVLTKSNRDAGNCWKSL 92 (93)
T ss_pred EEEEEEeCCCCCCcccccc
Confidence 6899988643 2356543
No 44
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.96 E-value=1.1e-08 Score=92.45 Aligned_cols=110 Identities=17% Similarity=0.150 Sum_probs=66.7
Q ss_pred cCCceEEEEcCCCCChHHHHHHHHHhh-----CCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCE
Q 019172 184 LKGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRA 258 (345)
Q Consensus 184 l~~~~IvLIG~~GSGKSTVAk~LA~~L-----g~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~ 258 (345)
-++..|+|+|++||||||+++.|+..| +..++|.|.+.....+. +. +...+..+.++.+.. +...+...+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~-~~-~~~~~~~~~~~~l~~-~a~~~~~~G~~ 98 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSD-LG-FSDADRKENIRRVGE-VAKLMVDAGLV 98 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhc-CC-cCcccHHHHHHHHHH-HHHHHhhCCCE
Confidence 367889999999999999999999987 46889999987554431 11 112222344444322 23334444556
Q ss_pred EEEcCCCCCcccCcHHHHHHHh-cCc-EEEEEcChhhhchhh
Q 019172 259 VVATLGGQQGAAARADKWQHLY-AGF-TVWLSQTEAMGKLLR 298 (345)
Q Consensus 259 VIAtGGG~~~avlr~~~r~~L~-~G~-VV~Ld~s~a~~~~~R 298 (345)
||+...+. ....+...+++++ .|+ +|||++|.++. ..|
T Consensus 99 VI~~~~~~-~~~~R~~~r~~l~~~~~i~V~L~~~~e~~-~~R 138 (198)
T PRK03846 99 VLTAFISP-HRAERQMVRERLGEGEFIEVFVDTPLAIC-EAR 138 (198)
T ss_pred EEEEeCCC-CHHHHHHHHHHcccCCEEEEEEcCCHHHH-Hhc
Confidence 66544320 0012333444444 366 79999999865 444
No 45
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.95 E-value=6.4e-10 Score=91.06 Aligned_cols=99 Identities=19% Similarity=0.153 Sum_probs=57.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhc--CCCEEEEcCCC
Q 019172 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSS--HVRAVVATLGG 265 (345)
Q Consensus 188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~--~~~~VIAtGGG 265 (345)
.|+|+|++||||||+|+.||+.+|++++++|+++.+..-.....-.. +-.....+.-.+.++.+.. ....+|-.|..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ii~g~~ 79 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDLIREPGWIERDDDER-EYIDADIDLLDDILEQLQNKPDNDNWIIDGSY 79 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHHHCCGTHCHGCTTCC-HHHHHHHHHHHHHHHHHHETTT--EEEEECCS
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecceEEeccccccCcchh-hHHHHHHHHHHHHHHhhhccCCCCeEEEeCCC
Confidence 48999999999999999999999999999999542111101100000 0022334444555666632 22334445542
Q ss_pred CCcccCcHHHHHHHh-cCcEEEEEcChhh
Q 019172 266 QQGAAARADKWQHLY-AGFTVWLSQTEAM 293 (345)
Q Consensus 266 ~~~avlr~~~r~~L~-~G~VV~Ld~s~a~ 293 (345)
. ...-..+. ...+|||+.+.+.
T Consensus 80 -----~-~~~~~~~~~~~~~i~l~~~~~~ 102 (121)
T PF13207_consen 80 -----E-SEMEIRLPEFDHVIYLDAPDEE 102 (121)
T ss_dssp -----C-HCCHSCCHHGGCEEEEEEEEHH
T ss_pred -----c-cchhhhhhcCCEEEEEECCCHH
Confidence 1 11111222 3579999998873
No 46
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.95 E-value=4.7e-09 Score=92.22 Aligned_cols=102 Identities=13% Similarity=0.150 Sum_probs=64.1
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEE
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAV 259 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~V 259 (345)
.+..|+|+|++|+||||+|+.||..|. +.++|+|.+.+.... .+. +..++...+++.+.. +.+.+.. .+.+
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~-~~~-~~~~~r~~~~~~~~~-~a~~~~~-~g~~ 78 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSK-GLG-FSKEDRDTNIRRIGF-VANLLTR-HGVI 78 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhc-CCC-CChhhHHHHHHHHHH-HHHHHHh-CCCE
Confidence 467899999999999999999999983 788999987654431 111 112233444555432 2222333 3334
Q ss_pred EEcCCCCCcccCcHHHHHHHh----cCcEEEEEcChhhh
Q 019172 260 VATLGGQQGAAARADKWQHLY----AGFTVWLSQTEAMG 294 (345)
Q Consensus 260 IAtGGG~~~avlr~~~r~~L~----~G~VV~Ld~s~a~~ 294 (345)
|.+++. ......|+.++ ...+|||+++.+..
T Consensus 79 vi~~~~----~~~~~~~~~l~~~~~~~~~v~l~~~~e~~ 113 (175)
T PRK00889 79 VLVSAI----SPYRETREEVRANIGNFLEVFVDAPLEVC 113 (175)
T ss_pred EEEecC----CCCHHHHHHHHhhcCCeEEEEEcCCHHHH
Confidence 444443 23456666665 25699999998864
No 47
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.95 E-value=8e-10 Score=117.18 Aligned_cols=109 Identities=16% Similarity=0.118 Sum_probs=79.2
Q ss_pred cceeeeeeecCcccc-cccceeEecCC-ce--EEEEeeccCC--ccceeeeccccccccCCCceeeecccceeehccccC
Q 019172 88 AEIELRLQLGSLEIQ-SSKDIFVDADG-TC--LTVRVNRSGS--FITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQD 161 (345)
Q Consensus 88 ~Ele~rl~l~~~~~~-~sr~i~I~~~d-~~--L~~~vls~~~--~~tlIe~k~l~~~i~p~Etiw~~Dd~~~~~~~k~~~ 161 (345)
.|.+++|.|.|.... ..+...|++|+ || |++.+.+-.. ....|+...|+.|.+|. ||++...-
T Consensus 366 ~~~~d~l~I~g~~~~~~~~g~~v~s~~DHRiaMa~~va~l~~~~~~v~I~~~~~v~ksyP~----F~~~l~~L------- 434 (661)
T PRK11860 366 EEGADYIRVTPPAQAADWKAAAIHTYDDHRMAMCFSLAAFNPAGLPVRINDPKCVAKTFPD----YFEALFSV------- 434 (661)
T ss_pred EEeCCeEEEECCCcccCCCCccccCCccHHHHHHHHHHHHcCCCCCEEEeccCeeecCCCC----hHHHHHHh-------
Confidence 345677888773221 23455688888 88 8888887762 44568889999999997 66654411
Q ss_pred CCCCcchhHhhHHHHHHhhhhhcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH
Q 019172 162 PELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF 224 (345)
Q Consensus 162 ~~~~~~~~~~~~~~l~a~~~~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~ 224 (345)
.. . +.-..+.|.|.|++||||||+|+.||++||++|+|+|+++...
T Consensus 435 ---------------g~-~-~~~~~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~ 480 (661)
T PRK11860 435 ---------------AQ-A-DADRVPVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLT 480 (661)
T ss_pred ---------------cC-C-cccCcceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence 11 0 0001357999999999999999999999999999999997765
No 48
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=98.95 E-value=2.8e-09 Score=88.99 Aligned_cols=91 Identities=21% Similarity=0.463 Sum_probs=73.8
Q ss_pred CCCcceEEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeecc-ccee
Q 019172 76 ANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDE-DQLV 154 (345)
Q Consensus 76 ~~~~~y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd-~~~~ 154 (345)
+.+++|.|+|+..|+++++++|.. +.++|++.|++.-++++++++..+...++|+ +.||.+|.+.|++|.++| ..+.
T Consensus 2 ~~~e~Y~WtQTl~eV~V~i~lp~~-~~~~kdv~v~i~~~~l~v~~~~~~~~~~~i~-G~L~~~V~~des~Wtled~~~l~ 79 (102)
T cd06495 2 AVRENYTWSQDYTDVEVRVPVPKD-VVKGRQVSVDLQSSSIRVSVRDGGGEKVLME-GEFTHKINTENSLWSLEPGKCVL 79 (102)
T ss_pred CcCCceEEEeECCeEEEEEECCCC-CccceEEEEEEEcCEEEEEEecCCCCceEEe-CcccCcccCccceEEEeCCCEEE
Confidence 357899999999999999999984 3468899999999999999985333335677 999999999999999998 4578
Q ss_pred ehccccCCCCCcchh
Q 019172 155 INLKKQDPELKWPDI 169 (345)
Q Consensus 155 ~~~k~~~~~~~~~~~ 169 (345)
+.+.|.. +.-||.+
T Consensus 80 I~L~K~~-~~wW~~v 93 (102)
T cd06495 80 LSLSKCS-EVWWNAV 93 (102)
T ss_pred EEEEECC-Ccccchh
Confidence 8998864 2235554
No 49
>PRK13808 adenylate kinase; Provisional
Probab=98.94 E-value=6.9e-09 Score=102.53 Aligned_cols=102 Identities=19% Similarity=0.107 Sum_probs=63.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH------cCchhhhhhccChHH---HHHHHHHHHHHHhcCCC
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDS---VVNGECDVLESLSSHVR 257 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~------g~sI~ei~~~~Gee~---FRelE~~vL~~L~~~~~ 257 (345)
|+|+|+|+|||||||+++.||+.+|+++|++|+++.+.. |..+.+++..-++.. +..+-.+-|.+.....+
T Consensus 1 mrIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G 80 (333)
T PRK13808 1 MRLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANG 80 (333)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCC
Confidence 579999999999999999999999999999999997642 333445554322221 12222222222222234
Q ss_pred EEEEcCCCCCcccCcHHHHHH----Hh-----cCcEEEEEcChhhh
Q 019172 258 AVVATLGGQQGAAARADKWQH----LY-----AGFTVWLSQTEAMG 294 (345)
Q Consensus 258 ~VIAtGGG~~~avlr~~~r~~----L~-----~G~VV~Ld~s~a~~ 294 (345)
+||. | + +-+.+..+. |. -..+|||++|+++.
T Consensus 81 ~ILD-G--F---PRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evl 120 (333)
T PRK13808 81 FILD-G--F---PRTVPQAEALDALLKDKQLKLDAVVELRVNEGAL 120 (333)
T ss_pred EEEe-C--C---CCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHH
Confidence 5554 2 2 444333322 22 25799999998754
No 50
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.94 E-value=7.8e-09 Score=90.42 Aligned_cols=102 Identities=15% Similarity=0.190 Sum_probs=62.3
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH-c-----CchhhhhhccC-----hHHHHHHHHHHHHHHhc
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA-K-----QTIDSWMLAEG-----SDSVVNGECDVLESLSS 254 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~-g-----~sI~ei~~~~G-----ee~FRelE~~vL~~L~~ 254 (345)
...|+|+|++||||||+++.||+.+|+.++++|+++.+.. + ..+..++.. | ...+..++..+...+..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~ 81 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMES-GDLVPLDTVLDLLKDAMVAALGT 81 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcccCc
Confidence 3568899999999999999999999999999999876642 1 223333322 2 12223333333333333
Q ss_pred CCCEEEEcCCCCCcccCcHHHHHHHh-----cCcEEEEEcChhhh
Q 019172 255 HVRAVVATLGGQQGAAARADKWQHLY-----AGFTVWLSQTEAMG 294 (345)
Q Consensus 255 ~~~~VIAtGGG~~~avlr~~~r~~L~-----~G~VV~Ld~s~a~~ 294 (345)
...||..|- +.+......+. ...+|||+++.++.
T Consensus 82 -~~~~i~dg~-----~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~ 120 (188)
T TIGR01360 82 -SKGFLIDGY-----PREVKQGEEFERRIGPPTLVLYFDCSEDTM 120 (188)
T ss_pred -CCeEEEeCC-----CCCHHHHHHHHHcCCCCCEEEEEECCHHHH
Confidence 334444442 23332233332 25799999998764
No 51
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.93 E-value=1.5e-08 Score=92.14 Aligned_cols=121 Identities=15% Similarity=0.101 Sum_probs=71.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHc------CchhhhhhccCh----HHHHHHHHHHHHHHhcCCC
Q 019172 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK------QTIDSWMLAEGS----DSVVNGECDVLESLSSHVR 257 (345)
Q Consensus 188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g------~sI~ei~~~~Ge----e~FRelE~~vL~~L~~~~~ 257 (345)
+|+|+|+|||||||+|+.||+.+|+++|++++++.+... ..+.+++. .|. +.+.++-.+.+.+......
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~-~g~~vp~~~~~~l~~~~i~~~~~~~~ 79 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYME-KGELVPDEIVNQLVKERLTQNQDNEN 79 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCcccCC
Confidence 489999999999999999999999999999999876532 22333332 232 2222222222222111123
Q ss_pred EEEEcCCCCCcccCcHHHHHHHh------cCcEEEEEcChhhhchhhhhhhcccccccccccee
Q 019172 258 AVVATLGGQQGAAARADKWQHLY------AGFTVWLSQTEAMGKLLRVFVLSLHLRSVTSYFVR 315 (345)
Q Consensus 258 ~VIAtGGG~~~avlr~~~r~~L~------~G~VV~Ld~s~a~~~~~Rv~v~~~h~R~~~~~~~~ 315 (345)
.+|-.|- +-+....+.|. -..+|||++|.++. ..|..-+..+......|+..
T Consensus 80 ~~ilDGf-----Prt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~-~~Rl~~R~~~~~~g~~y~~~ 137 (210)
T TIGR01351 80 GFILDGF-----PRTLSQAEALDALLKEKIDAVIELDVPDEEL-VERLSGRRICPSCGRVYHLK 137 (210)
T ss_pred cEEEeCC-----CCCHHHHHHHHHHhccCCCEEEEEECCHHHH-HHHHHCCCccCCcCCccccc
Confidence 3444443 34444444442 25799999999876 55644444444444444443
No 52
>PRK14531 adenylate kinase; Provisional
Probab=98.93 E-value=8.2e-09 Score=92.07 Aligned_cols=38 Identities=24% Similarity=0.311 Sum_probs=35.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF 224 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~ 224 (345)
++|+|+|+|||||||+++.||+.+|+++|++++++.+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~ 40 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSE 40 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHH
Confidence 57999999999999999999999999999999988764
No 53
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.92 E-value=5.1e-09 Score=90.28 Aligned_cols=99 Identities=16% Similarity=0.191 Sum_probs=60.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH---cCchhhhhh--ccChHHHHHHHHHHHHHHh-cCCCEEE
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTIDSWML--AEGSDSVVNGECDVLESLS-SHVRAVV 260 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~---g~sI~ei~~--~~Gee~FRelE~~vL~~L~-~~~~~VI 260 (345)
+.|+|.|++||||||+|+.||+.||++++|.|+++++.. |.++..+.. .+.....+.+.. .+.++. ...++||
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~Vi 79 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKIDR-RIHEIALKEKNVVL 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHHH-HHHHHHhcCCCEEE
Confidence 468999999999999999999999999999998876654 444443221 111112222222 233333 4456666
Q ss_pred EcCCCCCcccCcHHHHHHHhcCcEEEEEcChhhh
Q 019172 261 ATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMG 294 (345)
Q Consensus 261 AtGGG~~~avlr~~~r~~L~~G~VV~Ld~s~a~~ 294 (345)
...++. ..+. -..+.+|||++|.++.
T Consensus 80 ~g~~~~--~~~~------~~~d~~v~v~a~~~~r 105 (171)
T TIGR02173 80 ESRLAG--WIVR------EYADVKIWLKAPLEVR 105 (171)
T ss_pred Eecccc--eeec------CCcCEEEEEECCHHHH
Confidence 322210 1110 0135799999998854
No 54
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.90 E-value=3.1e-09 Score=89.03 Aligned_cols=93 Identities=17% Similarity=0.110 Sum_probs=60.9
Q ss_pred EEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEE-cCCCCC
Q 019172 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVA-TLGGQQ 267 (345)
Q Consensus 189 IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIA-tGGG~~ 267 (345)
|+|+|++||||||+|+.||+.+|++++|.|.+.++..+.-..... ....+++...+.+.++....++||. .+++.
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~~~~~~~~---~~~~i~~~l~~~~~~~~~~~~~Vidg~~~~~- 77 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGKLASEVA---AIPEVRKALDERQRELAKKPGIVLEGRDIGT- 77 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHHHHHHHhc---ccHhHHHHHHHHHHHHhhCCCEEEEeeeeee-
Confidence 789999999999999999999999999999654332221111111 1233555555556666665666763 33331
Q ss_pred cccCcHHHHHHHh-cCcEEEEEcChhhh
Q 019172 268 GAAARADKWQHLY-AGFTVWLSQTEAMG 294 (345)
Q Consensus 268 ~avlr~~~r~~L~-~G~VV~Ld~s~a~~ 294 (345)
. .+. ...+|||+++++..
T Consensus 78 --~-------~~~~~~~~i~l~~~~~~r 96 (147)
T cd02020 78 --V-------VFPDADLKIFLTASPEVR 96 (147)
T ss_pred --E-------EcCCCCEEEEEECCHHHH
Confidence 1 122 57899999999854
No 55
>PRK01184 hypothetical protein; Provisional
Probab=98.88 E-value=1.7e-08 Score=89.18 Aligned_cols=101 Identities=10% Similarity=0.026 Sum_probs=60.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH-cCchhhhhhccChHHHHHHHH---HH-----HHHHhc-CC
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA-KQTIDSWMLAEGSDSVVNGEC---DV-----LESLSS-HV 256 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~-g~sI~ei~~~~Gee~FRelE~---~v-----L~~L~~-~~ 256 (345)
+.|+|+|+|||||||+++ +++.+|++++++|+++.+.. +..+..+.+..|+..++..+. .+ ...+.. ..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIREKGD 80 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHHhcCC
Confidence 468899999999999998 78999999999988876654 223333333334433322221 11 122222 23
Q ss_pred CEEEEcCCCCCcccCcHHHHHHHh-----cCcEEEEEcChhhh
Q 019172 257 RAVVATLGGQQGAAARADKWQHLY-----AGFTVWLSQTEAMG 294 (345)
Q Consensus 257 ~~VIAtGGG~~~avlr~~~r~~L~-----~G~VV~Ld~s~a~~ 294 (345)
..||..|- -.....+.++ ...+|||+++.+..
T Consensus 81 ~~vvidg~------r~~~e~~~~~~~~~~~~~~i~v~~~~~~~ 117 (184)
T PRK01184 81 EVVVIDGV------RGDAEVEYFRKEFPEDFILIAIHAPPEVR 117 (184)
T ss_pred CcEEEeCC------CCHHHHHHHHHhCCcccEEEEEECCHHHH
Confidence 45555542 1222233332 34799999998864
No 56
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.85 E-value=1.4e-08 Score=94.53 Aligned_cols=96 Identities=15% Similarity=0.076 Sum_probs=66.2
Q ss_pred EEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcC
Q 019172 189 IFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATL 263 (345)
Q Consensus 189 IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtG 263 (345)
|+|+|+|||||||+|+.||+.|+ +.+++.|.+.+... . ....+++.+++.+..+++++...+..||..+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~-----~-~~~~~e~~~~~~~~~~i~~~l~~~~~VI~D~ 75 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFP-----V-WKEKYEEFIRDSTLYLIKTALKNKYSVIVDD 75 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhH-----H-hhHHhHHHHHHHHHHHHHHHHhCCCeEEEec
Confidence 78999999999999999999883 44666776655331 1 1234677788888888888776666788777
Q ss_pred CCCCcccCc---HHHHHHHh-cC---cEEEEEcChhhh
Q 019172 264 GGQQGAAAR---ADKWQHLY-AG---FTVWLSQTEAMG 294 (345)
Q Consensus 264 GG~~~avlr---~~~r~~L~-~G---~VV~Ld~s~a~~ 294 (345)
+. ... .+.+...+ .| .+|||++|.+..
T Consensus 76 ~~----~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~ 109 (249)
T TIGR03574 76 TN----YYNSMRRDLINIAKEYNKNYIIIYLKAPLDTL 109 (249)
T ss_pred cc----hHHHHHHHHHHHHHhCCCCEEEEEecCCHHHH
Confidence 64 222 22233333 23 589999998755
No 57
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.84 E-value=6.2e-09 Score=91.44 Aligned_cols=105 Identities=13% Similarity=0.008 Sum_probs=57.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCc----eeeC------------------cHHHHHHHcCchhhhhhccChHHHHHH
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYT----PLST------------------KELLETFAKQTIDSWMLAEGSDSVVNG 244 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~----fID~------------------D~lIE~~~g~sI~ei~~~~Gee~FRel 244 (345)
..|+|+|++||||||+++.|+..++.. |+.. +++........+..+.+..|. +..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g- 78 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGL--SYG- 78 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCc--ccc-
Confidence 468999999999999999999988642 2211 011111111111111111110 000
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCCcccCcHHHHHHHhcCcEEEEEcChhhhchhhh
Q 019172 245 ECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMGKLLRV 299 (345)
Q Consensus 245 E~~vL~~L~~~~~~VIAtGGG~~~avlr~~~r~~L~~G~VV~Ld~s~a~~~~~Rv 299 (345)
....+.........||++|++ ...+..++.+..+.+|||+++.++. ..|.
T Consensus 79 ~~~~i~~~~~~g~~vv~~g~~----~~~~~~~~~~~~~~~i~l~~~~~~~-~~Rl 128 (179)
T TIGR02322 79 IPAEIDQWLEAGDVVVVNGSR----AVLPEARQRYPNLLVVNITASPDVL-AQRL 128 (179)
T ss_pred ChHHHHHHHhcCCEEEEECCH----HHHHHHHHHCCCcEEEEEECCHHHH-HHHH
Confidence 011122333345578888886 3445556655567899999988765 4443
No 58
>PLN02165 adenylate isopentenyltransferase
Probab=98.84 E-value=9e-09 Score=101.77 Aligned_cols=83 Identities=8% Similarity=0.170 Sum_probs=68.0
Q ss_pred hcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHH--------------HHHHHcCc---hhhhhhccCh---HHHH
Q 019172 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL--------------LETFAKQT---IDSWMLAEGS---DSVV 242 (345)
Q Consensus 183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~l--------------IE~~~g~s---I~ei~~~~Ge---e~FR 242 (345)
..++..|+|+|++||||||+|..||+.++..+|++|.+ .++..|.. ++.+...+|+ ..|+
T Consensus 40 ~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~~F~ 119 (334)
T PLN02165 40 NCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTASEFR 119 (334)
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHHHHH
Confidence 34577899999999999999999999999999999998 56666765 5544444444 7888
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCC
Q 019172 243 NGECDVLESLSSHVRAVVATLGG 265 (345)
Q Consensus 243 elE~~vL~~L~~~~~~VIAtGGG 265 (345)
+.+..+++++.+..+.+|.+||+
T Consensus 120 ~~a~~~I~~i~~~~~~PI~vGGT 142 (334)
T PLN02165 120 SLASLSISEITSRQKLPIVAGGS 142 (334)
T ss_pred HHHHHHHHHHHHCCCcEEEECCh
Confidence 88888999988878888888885
No 59
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.83 E-value=4.6e-10 Score=119.04 Aligned_cols=102 Identities=12% Similarity=0.135 Sum_probs=78.2
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchh-hhhhccChHHHHHHHHHHHHHHhc-CCCEEEEc
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTID-SWMLAEGSDSVVNGECDVLESLSS-HVRAVVAT 262 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~-ei~~~~Gee~FRelE~~vL~~L~~-~~~~VIAt 262 (345)
....|+++|+||+||||||+.|++.|++.++|+|.++....++.+. +.+...|+..|++.|.+++..+.. ..+.|+++
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~v~~~ 293 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERRGGAVSSPTGAAEVEFRIAKAIAHDMTTFICKT 293 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567889999999999999999999999999999999888887776 566777888999999888777664 24456666
Q ss_pred CCCCCcccCcHHHHHHH---------h-cC-----cEEEEEc
Q 019172 263 LGGQQGAAARADKWQHL---------Y-AG-----FTVWLSQ 289 (345)
Q Consensus 263 GGG~~~avlr~~~r~~L---------~-~G-----~VV~Ld~ 289 (345)
||| +++...|+..+ + .| .||||+.
T Consensus 294 Ggv---aI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~ 332 (664)
T PTZ00322 294 DGV---AVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEV 332 (664)
T ss_pred CCE---EEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEE
Confidence 664 45555333322 2 23 5999998
No 60
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=98.82 E-value=7.6e-09 Score=83.58 Aligned_cols=84 Identities=24% Similarity=0.486 Sum_probs=71.3
Q ss_pred eEEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeecc-cceeehccc
Q 019172 81 YEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDE-DQLVINLKK 159 (345)
Q Consensus 81 y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd-~~~~~~~k~ 159 (345)
|.|+|+..|++++++||......+|++.|+....++++++++.. .+|+ ++||.+|.+.|+.|.++| ..+.+.+.|
T Consensus 1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~~---~~i~-G~L~~~V~~des~Wtled~~~l~i~L~K 76 (87)
T cd06492 1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQP---PIID-GELYNEVKVEESSWLIEDGKVVTVNLEK 76 (87)
T ss_pred CccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEECCCc---eEEe-CcccCcccccccEEEEeCCCEEEEEEEE
Confidence 89999999999999998754467899999988899999998752 3566 999999999999999988 468999999
Q ss_pred cCCCCCcch
Q 019172 160 QDPELKWPD 168 (345)
Q Consensus 160 ~~~~~~~~~ 168 (345)
...+.=||.
T Consensus 77 ~~~~~wW~~ 85 (87)
T cd06492 77 INKMEWWSR 85 (87)
T ss_pred CCCCccccc
Confidence 766555554
No 61
>PRK14527 adenylate kinase; Provisional
Probab=98.81 E-value=2.7e-08 Score=89.05 Aligned_cols=41 Identities=27% Similarity=0.349 Sum_probs=37.4
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~ 225 (345)
+++.|+++|++||||||+++.||+.+|+..++.|+++.+..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~ 45 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHV 45 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 56789999999999999999999999999999999987643
No 62
>PRK07261 topology modulation protein; Provisional
Probab=98.80 E-value=1.3e-08 Score=90.49 Aligned_cols=91 Identities=12% Similarity=0.087 Sum_probs=58.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCCC
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQ 266 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG~ 266 (345)
+.|+|+|++||||||+|+.|++.+|+++++.|.+.... .+... ..+.|.+. +.++..+..+|| -|..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~------~~~~~-~~~~~~~~----~~~~~~~~~wIi-dg~~- 67 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP------NWQER-DDDDMIAD----ISNFLLKHDWII-DGNY- 67 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc------ccccC-CHHHHHHH----HHHHHhCCCEEE-cCcc-
Confidence 47999999999999999999999999999999976421 12111 12222222 233334455555 3332
Q ss_pred CcccCcHHHHHHHh-cCcEEEEEcChhhh
Q 019172 267 QGAAARADKWQHLY-AGFTVWLSQTEAMG 294 (345)
Q Consensus 267 ~~avlr~~~r~~L~-~G~VV~Ld~s~a~~ 294 (345)
........+. ...+|||+.|...-
T Consensus 68 ----~~~~~~~~l~~ad~vI~Ld~p~~~~ 92 (171)
T PRK07261 68 ----SWCLYEERMQEADQIIFLNFSRFNC 92 (171)
T ss_pred ----hhhhHHHHHHHCCEEEEEcCCHHHH
Confidence 1111123333 78999999998754
No 63
>PRK06762 hypothetical protein; Provisional
Probab=98.80 E-value=2.7e-08 Score=86.36 Aligned_cols=101 Identities=18% Similarity=0.099 Sum_probs=60.2
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhh--CCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcC
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGL--GYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATL 263 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~L--g~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtG 263 (345)
++-|+|+|++||||||+|+.|++.+ ++.+++.|.+.....+.. ...+......++ ...+.....+..||..+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~-----~~~~~~~~~~~~-~~~~~~~~~g~~vild~ 75 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVK-----DGPGNLSIDLIE-QLVRYGLGHCEFVILEG 75 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhcccc-----CCCCCcCHHHHH-HHHHHHHhCCCEEEEch
Confidence 3568999999999999999999999 677899999776543211 111111122222 23333333455566554
Q ss_pred CCCCcccCcHHHH---HHHh--cC---cEEEEEcChhhhchhh
Q 019172 264 GGQQGAAARADKW---QHLY--AG---FTVWLSQTEAMGKLLR 298 (345)
Q Consensus 264 GG~~~avlr~~~r---~~L~--~G---~VV~Ld~s~a~~~~~R 298 (345)
. .....++ ..|. .+ .+|||++|.++. ..|
T Consensus 76 ~-----~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~-~~R 112 (166)
T PRK06762 76 I-----LNSDRYGPMLKELIHLFRGNAYTYYFDLSFEET-LRR 112 (166)
T ss_pred h-----hccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHH-HHH
Confidence 3 1222233 3332 23 689999998754 444
No 64
>PRK02496 adk adenylate kinase; Provisional
Probab=98.78 E-value=4.1e-08 Score=86.95 Aligned_cols=102 Identities=16% Similarity=0.120 Sum_probs=64.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH--cC----chhhhhhccChHHHHHHHHHHHHH-HhcC--CC
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA--KQ----TIDSWMLAEGSDSVVNGECDVLES-LSSH--VR 257 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~--g~----sI~ei~~~~Gee~FRelE~~vL~~-L~~~--~~ 257 (345)
++|+|+|+|||||||+++.||+.+|+++++.|+++.+.. +. .+..++ ..|.....++...++.+ +.+. .+
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~-~~g~~~~~~~~~~~l~~~l~~~~~~~ 80 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYM-DKGELVPDQLVLDLVQERLQQPDAAN 80 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHH-HCCCccCHHHHHHHHHHHHhCcCccC
Confidence 579999999999999999999999999999999987654 11 122232 23544444555555444 3221 23
Q ss_pred EEEEcCCCCCcccCcHHHHHH----Hh-----cCcEEEEEcChhhh
Q 019172 258 AVVATLGGQQGAAARADKWQH----LY-----AGFTVWLSQTEAMG 294 (345)
Q Consensus 258 ~VIAtGGG~~~avlr~~~r~~----L~-----~G~VV~Ld~s~a~~ 294 (345)
.+|-.|-. -+....+. +. ...+|||+.+.++.
T Consensus 81 g~vldGfP-----r~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~ 121 (184)
T PRK02496 81 GWILDGFP-----RKVTQAAFLDELLQEIGQSGERVVNLDVPDDVV 121 (184)
T ss_pred CEEEeCCC-----CCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHH
Confidence 34445542 22222222 21 25789999998865
No 65
>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism]
Probab=98.78 E-value=7.4e-10 Score=113.25 Aligned_cols=120 Identities=14% Similarity=0.034 Sum_probs=93.4
Q ss_pred eEEeecccceeeeeeecCccccccc---ceeEecCC-ce--EEEEeeccCC-ccceeeeccccccccCCCceeeecccce
Q 019172 81 YEFSDGSAEIELRLQLGSLEIQSSK---DIFVDADG-TC--LTVRVNRSGS-FITLIETNQLFDKIKPTETIWYIDEDQL 153 (345)
Q Consensus 81 y~~~~~~~Ele~rl~l~~~~~~~sr---~i~I~~~d-~~--L~~~vls~~~-~~tlIe~k~l~~~i~p~Etiw~~Dd~~~ 153 (345)
=-|-.+..|.++++.|.+.++.+=+ .+.+-.|| || |+|+||+.-. .++.|++..|..|+||+ |||-...
T Consensus 469 ~klg~~~~E~~dg~~v~~~~~k~lk~ae~~g~~TydDhr~am~fsvLA~~~~~~~~i~d~~ct~kt~p~----y~~Vl~~ 544 (595)
T KOG0692|consen 469 RKLGATVEEGSDGYCVITPPEKKLKLAEIDGSLTYDDHRMAMAFSVLAACADVPITINDPGCTRKTFPD----YFQVLER 544 (595)
T ss_pred HHhcccccccCceEEEeCCchHhccchhhccccccccccchhhhhHHHhccCCCccccCCCccccccch----HHHHHHH
Confidence 3467789999999999999955533 22444676 88 9999776544 77889999999999998 8888777
Q ss_pred eehccccCCCCCcchhHhhHHHHHHhhhhhcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172 154 VINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (345)
Q Consensus 154 ~~~~k~~~~~~~~~~~~~~~~~l~a~~~~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D 218 (345)
+.+-|..+.| ..|+ ...+..++|++||.++||+|+|+..|+.|+|.++|.|
T Consensus 545 ~~~~kltgae-----ple~---------~a~knssm~vigmr~agkttigk~~akeL~~kimdld 595 (595)
T KOG0692|consen 545 ITKHKLTGAE-----PLES---------GAIKNSSMFVIGMREAGKTTIGKPAAKELYWKIMDLD 595 (595)
T ss_pred HhhccccccC-----hhhc---------cccccceeeeehhhhcCceecCccchHHhCeeeeccC
Confidence 7666554432 1122 2234478999999999999999999999999999987
No 66
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=98.73 E-value=7.7e-08 Score=89.03 Aligned_cols=150 Identities=11% Similarity=0.079 Sum_probs=90.9
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcC--chhhhhhccChHHH---------------------
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ--TIDSWMLAEGSDSV--------------------- 241 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~--sI~ei~~~~Gee~F--------------------- 241 (345)
.+..|.|+|.+||||||++++|++.+|++++|+|.+..+.++. .+.++++..|++.+
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~~ 84 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEAK 84 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHHH
Confidence 3467999999999999999999999999999999998888653 24567777777664
Q ss_pred HHHHH--------HHHHHHhcC-CCEEEEcCCCCCcccCcHHHHHHH-hcCcEEEEEcChhhhchhhhhhhc--------
Q 019172 242 VNGEC--------DVLESLSSH-VRAVVATLGGQQGAAARADKWQHL-YAGFTVWLSQTEAMGKLLRVFVLS-------- 303 (345)
Q Consensus 242 RelE~--------~vL~~L~~~-~~~VIAtGGG~~~avlr~~~r~~L-~~G~VV~Ld~s~a~~~~~Rv~v~~-------- 303 (345)
+.+|. ++.+.+... ...||.-.. .+-+..+..- .-+.+|++.+|.++. ..|+..++
T Consensus 85 ~~Le~i~HP~V~~~~~~~~~~~~~~~vv~eip-----LL~E~~~~~~~~~D~vi~V~a~~e~r-i~Rl~~Rd~~s~~~a~ 158 (204)
T PRK14733 85 KWLEDYLHPVINKEIKKQVKESDTVMTIVDIP-----LLGPYNFRHYDYLKKVIVIKADLETR-IRRLMERDGKNRQQAV 158 (204)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCCeEEEEec-----hhhhccCchhhhCCEEEEEECCHHHH-HHHHHHcCCCCHHHHH
Confidence 22221 111222222 234443222 1222222111 246799999998855 44432222
Q ss_pred ---cccccccccceeeeeeccCCC-ChHHHhhhcchhhhhh
Q 019172 304 ---LHLRSVTSYFVRLEFVSSFSR-TNEHIMARKPAVMKTL 340 (345)
Q Consensus 304 ---~h~R~~~~~~~~le~i~~~~r-~~~~~~~~~~~~~~~~ 340 (345)
..+++....-+...+|.+=+. +.++++.+--.++.++
T Consensus 159 ~ri~~Q~~~eek~~~aD~VI~N~g~~~~~l~~~~~~~~~~~ 199 (204)
T PRK14733 159 AFINLQISDKEREKIADFVIDNTELTDQELESKLITTINEI 199 (204)
T ss_pred HHHHhCCCHHHHHHhCCEEEECcCCCHHHHHHHHHHHHHHH
Confidence 122344444555667766666 7777776655555443
No 67
>PRK14526 adenylate kinase; Provisional
Probab=98.71 E-value=2.6e-07 Score=85.52 Aligned_cols=120 Identities=12% Similarity=0.071 Sum_probs=71.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH------cCchhhhhhccChHHHHHHHHHHHHH-Hh---cCC
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLES-LS---SHV 256 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~------g~sI~ei~~~~Gee~FRelE~~vL~~-L~---~~~ 256 (345)
|+|+|+|++||||||+++.||+.+|++++++++++.+.. |..+.+++. .|.-.--+.-..++.+ |. ...
T Consensus 1 m~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~-~g~lvpd~~~~~lv~~~l~~~~~~~ 79 (211)
T PRK14526 1 MKLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVE-NGQLVPDSITIKIVEDKINTIKNND 79 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHH-cCccCChHHHHHHHHHHHhcccccC
Confidence 469999999999999999999999999999999987643 233555553 2332212222222222 22 223
Q ss_pred CEEEEcCCCCCcccCcHHHHHHHh---c-CcEEEEEcChhhhchhhhhhhccccccccccce
Q 019172 257 RAVVATLGGQQGAAARADKWQHLY---A-GFTVWLSQTEAMGKLLRVFVLSLHLRSVTSYFV 314 (345)
Q Consensus 257 ~~VIAtGGG~~~avlr~~~r~~L~---~-G~VV~Ld~s~a~~~~~Rv~v~~~h~R~~~~~~~ 314 (345)
++||. |- +-+.+..+.|. . -.+|+|+++.++. ..|..-++.+......|+.
T Consensus 80 g~ilD-Gf-----PR~~~Qa~~l~~~~~~~~vi~l~~~~~~~-~~Rl~~R~~~~~~g~~y~~ 134 (211)
T PRK14526 80 NFILD-GF-----PRNINQAKALDKFLPNIKIINFLIDEELL-IKRLSGRRICKSCNNIFNI 134 (211)
T ss_pred cEEEE-CC-----CCCHHHHHHHHHhcCCCEEEEEECCHHHH-HHHHHCCCcccccCCcccc
Confidence 45663 32 44444444553 1 3577899988765 5554444444444444443
No 68
>PLN02200 adenylate kinase family protein
Probab=98.71 E-value=6.6e-08 Score=90.61 Aligned_cols=103 Identities=12% Similarity=0.099 Sum_probs=63.1
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHc------CchhhhhhccChHHHHHHHHHHHH-HHhcC-CC
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK------QTIDSWMLAEGSDSVVNGECDVLE-SLSSH-VR 257 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g------~sI~ei~~~~Gee~FRelE~~vL~-~L~~~-~~ 257 (345)
+..|+|+|+|||||||+|+.||+.+|+++|++++++.+... ..+.+.+. .|...=.+.-..++. .+... .+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~-~G~~vp~e~~~~~l~~~l~~~~~~ 121 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIK-EGKIVPSEVTVKLIQKEMESSDNN 121 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHH-cCCCCcHHHHHHHHHHHHhcCCCC
Confidence 46789999999999999999999999999999999876432 11222221 232211222222222 22211 23
Q ss_pred EEEEcCCCCCcccCcHHHHHHHh------cCcEEEEEcChhhh
Q 019172 258 AVVATLGGQQGAAARADKWQHLY------AGFTVWLSQTEAMG 294 (345)
Q Consensus 258 ~VIAtGGG~~~avlr~~~r~~L~------~G~VV~Ld~s~a~~ 294 (345)
.+|-.|- +-+.+.+..+. -..+|||++++++.
T Consensus 122 ~~ILDG~-----Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~ 159 (234)
T PLN02200 122 KFLIDGF-----PRTEENRIAFERIIGAEPNVVLFFDCPEEEM 159 (234)
T ss_pred eEEecCC-----cccHHHHHHHHHHhccCCCEEEEEECCHHHH
Confidence 3443342 45555555442 25799999998864
No 69
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.69 E-value=1.3e-07 Score=83.53 Aligned_cols=38 Identities=26% Similarity=0.295 Sum_probs=33.6
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCcee--eCcHHHHH
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPL--STKELLET 223 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fI--D~D~lIE~ 223 (345)
++.|+|+|++||||||+|+.|++.++.+++ +.|.++..
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~ 41 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA 41 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh
Confidence 567999999999999999999999988766 88988764
No 70
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.68 E-value=4.1e-08 Score=87.66 Aligned_cols=102 Identities=15% Similarity=0.135 Sum_probs=60.2
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh-----CCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEE
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAV 259 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L-----g~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~V 259 (345)
++..|+|+|.+||||||||+.|.++| ...++|+|.+..... ..+. +-.++.++..|.+ .++.+.|......|
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~-~dl~-fs~~dR~e~~rr~-~~~A~ll~~~G~iv 77 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLN-ADLG-FSKEDREENIRRI-AEVAKLLADQGIIV 77 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTT-TT---SSHHHHHHHHHHH-HHHHHHHHHTTSEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccC-CCCC-CCHHHHHHHHHHH-HHHHHHHHhCCCeE
Confidence 36789999999999999999999998 367899998764322 1121 1122233333332 23334455555555
Q ss_pred EEcCCCCCcccCcHHHHHHHh----c--CcEEEEEcChhhh
Q 019172 260 VATLGGQQGAAARADKWQHLY----A--GFTVWLSQTEAMG 294 (345)
Q Consensus 260 IAtGGG~~~avlr~~~r~~L~----~--G~VV~Ld~s~a~~ 294 (345)
|++.- ...++.|+..+ . -..|||++|.++-
T Consensus 78 Iva~i-----sp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~ 113 (156)
T PF01583_consen 78 IVAFI-----SPYREDREWARELIPNERFIEVYVDCPLEVC 113 (156)
T ss_dssp EEE---------SHHHHHHHHHHHHTTEEEEEEEES-HHHH
T ss_pred EEeec-----cCchHHHHHHHHhCCcCceEEEEeCCCHHHH
Confidence 54433 24455566554 2 3689999998865
No 71
>PRK14528 adenylate kinase; Provisional
Probab=98.66 E-value=2.4e-07 Score=83.31 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=36.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~ 225 (345)
++|+|+|+|||||||+++.||+.+|++++++|+++.+..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~ 40 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAV 40 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHh
Confidence 579999999999999999999999999999999987643
No 72
>PRK08233 hypothetical protein; Provisional
Probab=98.63 E-value=1.2e-07 Score=82.43 Aligned_cols=105 Identities=12% Similarity=0.068 Sum_probs=56.9
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhC-CceeeCcHHHHHHHcCchhhhhhc-cChH-HHHHHHHHHHHHHhcCC--CEE
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLG-YTPLSTKELLETFAKQTIDSWMLA-EGSD-SVVNGECDVLESLSSHV--RAV 259 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg-~~fID~D~lIE~~~g~sI~ei~~~-~Gee-~FRelE~~vL~~L~~~~--~~V 259 (345)
+++-|.|.|++||||||+|+.||+.|+ ...+..|.+........+.+|... ..++ ...+.-.+.++++.+.. ++|
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v 81 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAKSNVDYI 81 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcCCCceEE
Confidence 356788999999999999999999996 445555544322111122333221 1111 11111122344444333 456
Q ss_pred EEcCCCCCcccCcHHHHHHHhcCcEEEEEcChhhh
Q 019172 260 VATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMG 294 (345)
Q Consensus 260 IAtGGG~~~avlr~~~r~~L~~G~VV~Ld~s~a~~ 294 (345)
|..|.- ....++.+.. ...+|||++|.++.
T Consensus 82 ivd~~~---~~~~~~~~~~--~d~~i~l~~~~~~~ 111 (182)
T PRK08233 82 IVDYPF---AYLNSEMRQF--IDVTIFIDTPLDIA 111 (182)
T ss_pred EEeeeh---hhccHHHHHH--cCEEEEEcCCHHHH
Confidence 654431 1223322221 47899999999865
No 73
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.63 E-value=6.2e-08 Score=87.65 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=35.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~ 225 (345)
++|+|+|+|||||||+|+.||+.++++.+|+|++++...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~ 39 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAI 39 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhh
Confidence 579999999999999999999999999999999887543
No 74
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.62 E-value=1.8e-07 Score=84.75 Aligned_cols=54 Identities=19% Similarity=0.180 Sum_probs=41.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHc---CchhhhhhccChHHH
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK---QTIDSWMLAEGSDSV 241 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g---~sI~ei~~~~Gee~F 241 (345)
..|.|+|.+||||||+++.|++ +|++++|+|++..+.+. ....++++..|++.|
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~ 59 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEIL 59 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhc
Confidence 3689999999999999999999 99999999999887652 223444444555433
No 75
>PLN02459 probable adenylate kinase
Probab=98.62 E-value=4.2e-07 Score=87.34 Aligned_cols=121 Identities=12% Similarity=0.025 Sum_probs=72.8
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH------cCchhhhhhccChHHHHHHHHHHH-HHHhc----
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVL-ESLSS---- 254 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~------g~sI~ei~~~~Gee~FRelE~~vL-~~L~~---- 254 (345)
+++|+|+|+|||||+|+|+.||+.+|+.+|++++++.+.. |..+.+++.+ |.-.=-++=..++ ++|.+
T Consensus 29 ~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~-G~lVPdeiv~~ll~~~l~~~~~~ 107 (261)
T PLN02459 29 NVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQ-GKLVPDEIIFSLLSKRLEAGEEE 107 (261)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHc-CCccCHHHHHHHHHHHHhccccc
Confidence 4789999999999999999999999999999999987653 2223344332 3211111111222 22322
Q ss_pred CCCEEEEcCCCCCcccCcHHHHHHHh----cCcEEEEEcChhhhchhhhhhhccccccccccc
Q 019172 255 HVRAVVATLGGQQGAAARADKWQHLY----AGFTVWLSQTEAMGKLLRVFVLSLHLRSVTSYF 313 (345)
Q Consensus 255 ~~~~VIAtGGG~~~avlr~~~r~~L~----~G~VV~Ld~s~a~~~~~Rv~v~~~h~R~~~~~~ 313 (345)
..+.+|-.|- +-+.+..+.|. -..||+|+++.++. ..|..-++.+......|+
T Consensus 108 ~~~g~iLDGF-----PRt~~Qa~~Le~~~~id~Vi~L~v~d~~l-~~Rl~gR~~~~~~g~~Yn 164 (261)
T PLN02459 108 GESGFILDGF-----PRTVRQAEILEGVTDIDLVVNLKLREEVL-VEKCLGRRICSECGKNFN 164 (261)
T ss_pred CCceEEEeCC-----CCCHHHHHHHHhcCCCCEEEEEECCHHHH-HHHhhccccccccCcccc
Confidence 2234444443 55554444553 26799999999876 445444444444344444
No 76
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=98.59 E-value=7.1e-08 Score=87.52 Aligned_cols=81 Identities=17% Similarity=0.396 Sum_probs=70.2
Q ss_pred cCCCCCcceEEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeecccc
Q 019172 73 SIPANTSQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQ 152 (345)
Q Consensus 73 ~~~~~~~~y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd~~ 152 (345)
-..+..++|+|+|++.||+..|++|... .+++++.|.+...++.++++++. .|++ +.|+..|++.|+.|.++|..
T Consensus 13 ~ng~~~~~y~W~QtL~EV~i~i~vp~~~-~ksk~v~~~Iq~~hI~V~~kg~~---~ild-G~L~~~vk~des~WtiEd~k 87 (179)
T KOG2265|consen 13 GNGADEEKYTWDQTLEEVEIQIPVPPGT-AKSKDVHCSIQSKHIKVGLKGQP---PILD-GELSHSVKVDESTWTIEDGK 87 (179)
T ss_pred cCCccccceeeeeehhheEEEeecCCCC-cccceEEEEeeeeEEEEecCCCC---ceec-CccccccccccceEEecCCE
Confidence 3456678999999999999999999966 78999999999999999999987 3455 99999999999999999988
Q ss_pred eeehcc
Q 019172 153 LVINLK 158 (345)
Q Consensus 153 ~~~~~k 158 (345)
+++.+.
T Consensus 88 ~i~i~l 93 (179)
T KOG2265|consen 88 MIVILL 93 (179)
T ss_pred EEEEEe
Confidence 776553
No 77
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.59 E-value=3.5e-07 Score=81.65 Aligned_cols=37 Identities=19% Similarity=0.154 Sum_probs=34.4
Q ss_pred EEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH
Q 019172 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (345)
Q Consensus 189 IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~ 225 (345)
|.|+|.+||||||+++.|++..|++++|+|++..+.+
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~ 38 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVV 38 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHH
Confidence 7899999999999999999998899999999987765
No 78
>PRK04040 adenylate kinase; Provisional
Probab=98.51 E-value=1.3e-06 Score=79.24 Aligned_cols=107 Identities=10% Similarity=0.040 Sum_probs=62.2
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhh--CCceeeCcHHHHHHH---cC--chhhhhhcc--ChHHHHHHHHHHHHHHhcCC
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGL--GYTPLSTKELLETFA---KQ--TIDSWMLAE--GSDSVVNGECDVLESLSSHV 256 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~L--g~~fID~D~lIE~~~---g~--sI~ei~~~~--Gee~FRelE~~vL~~L~~~~ 256 (345)
.+.|+|+|++|+||||+++.|++.| ++.+++.|+++.+.+ |. +-+++-... -...++.+..+.++++....
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l~~~~~~~~~~~a~~~i~~~~~~~ 81 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKLPPEEQKELQREAAERIAEMAGEG 81 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhCChhhhHHHHHHHHHHHHHhhcCC
Confidence 4679999999999999999999999 899999999875543 21 112111110 01112222223334443333
Q ss_pred CEEEEcCC------CCCccc-CcHHHHHHHhcCcEEEEEcChhhh
Q 019172 257 RAVVATLG------GQQGAA-ARADKWQHLYAGFTVWLSQTEAMG 294 (345)
Q Consensus 257 ~~VIAtGG------G~~~av-lr~~~r~~L~~G~VV~Ld~s~a~~ 294 (345)
.+||.+-. |. .+ +..+....+.-..+|||.+++...
T Consensus 82 ~~~~~~h~~i~~~~g~--~~~~~~~~~~~l~pd~ii~l~a~p~~i 124 (188)
T PRK04040 82 PVIVDTHATIKTPAGY--LPGLPEWVLEELNPDVIVLIEADPDEI 124 (188)
T ss_pred CEEEeeeeeeccCCCC--cCCCCHHHHhhcCCCEEEEEeCCHHHH
Confidence 35554311 21 01 222333333346799999999855
No 79
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=98.50 E-value=1e-06 Score=80.22 Aligned_cols=39 Identities=21% Similarity=0.069 Sum_probs=35.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~ 225 (345)
+.|.|+|++||||||+++.|++.+|++++|+|++..+..
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~ 40 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREAL 40 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHH
Confidence 358999999999999999999999999999999987655
No 80
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.50 E-value=8.5e-07 Score=78.67 Aligned_cols=102 Identities=14% Similarity=0.133 Sum_probs=64.2
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh-----CCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEE
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAV 259 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L-----g~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~V 259 (345)
.++.|+|+|.+|+||||+++.|+..+ +..++|.|.+.....+ .+. +..++.+..++.+- .+...+...+..|
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~-~~~-~~~~~~~~~~~~~~-~~~~~~~~~G~~V 93 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNK-DLG-FSEEDRKENIRRIG-EVAKLFVRNGIIV 93 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhcc-ccC-CCHHHHHHHHHHHH-HHHHHHHcCCCEE
Confidence 56889999999999999999999998 2568899986654332 111 11222333444432 2334444555555
Q ss_pred EEcCCCCCcccCcHHHHHHHhc------CcEEEEEcChhhh
Q 019172 260 VATLGGQQGAAARADKWQHLYA------GFTVWLSQTEAMG 294 (345)
Q Consensus 260 IAtGGG~~~avlr~~~r~~L~~------G~VV~Ld~s~a~~ 294 (345)
|.... ....+.|+.++. -.+|||+++.+..
T Consensus 94 I~d~~-----~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~ 129 (184)
T TIGR00455 94 ITSFI-----SPYRADRQMVRELIEKGEFIEVFVDCPLEVC 129 (184)
T ss_pred EEecC-----CCCHHHHHHHHHhCcCCCeEEEEEeCCHHHH
Confidence 54432 355666666641 2579999998855
No 81
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=98.49 E-value=8.5e-07 Score=76.30 Aligned_cols=98 Identities=16% Similarity=0.160 Sum_probs=58.9
Q ss_pred EEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHc------CchhhhhhccChHHHHHHHHHHHH-HHhcC--CCEEEE
Q 019172 191 LVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK------QTIDSWMLAEGSDSVVNGECDVLE-SLSSH--VRAVVA 261 (345)
Q Consensus 191 LIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g------~sI~ei~~~~Gee~FRelE~~vL~-~L~~~--~~~VIA 261 (345)
|+|+|||||+|+|+.||+.+|+.+|+.++++++... .-+.+.+.. |..-=-++-.++++ ++... .+.+|-
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~-g~~vp~~~v~~ll~~~l~~~~~~~g~il 79 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDN-GELVPDELVIELLKERLEQPPCNRGFIL 79 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHT-TSS--HHHHHHHHHHHHHSGGTTTEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHh-hccchHHHHHHHHHHHHhhhcccceeee
Confidence 689999999999999999999999999999987642 123333332 33221222222322 23322 345554
Q ss_pred cCCCCCcccCcHHHHHHHh-----c----CcEEEEEcChhhh
Q 019172 262 TLGGQQGAAARADKWQHLY-----A----GFTVWLSQTEAMG 294 (345)
Q Consensus 262 tGGG~~~avlr~~~r~~L~-----~----G~VV~Ld~s~a~~ 294 (345)
.|- +-+.+..+.|. . ..+|+|+++.++.
T Consensus 80 dGf-----Prt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~ 116 (151)
T PF00406_consen 80 DGF-----PRTLEQAEALEEILEEEGIPPDLVIFLDCPDETL 116 (151)
T ss_dssp ESB------SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHH
T ss_pred eec-----cccHHHHHHHHHHHhhcccchheeeccccchhhh
Confidence 453 55555444442 1 4699999998755
No 82
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.47 E-value=6.9e-07 Score=82.01 Aligned_cols=40 Identities=15% Similarity=0.105 Sum_probs=32.6
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF 224 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~ 224 (345)
.++.|+|.|.+|+||||+++.||+.+|+.++-..|++.+.
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~ 41 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREF 41 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHH
Confidence 4578999999999999999999999999875555544443
No 83
>PRK14529 adenylate kinase; Provisional
Probab=98.47 E-value=1e-06 Score=82.71 Aligned_cols=110 Identities=5% Similarity=0.034 Sum_probs=69.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH------cCchhhhhhccChHHHHHHHHHHHHH-HhcC-CCE
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA------KQTIDSWMLAEGSDSVVNGECDVLES-LSSH-VRA 258 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~------g~sI~ei~~~~Gee~FRelE~~vL~~-L~~~-~~~ 258 (345)
++|+|+|+|||||||+++.||+.++++++++.+++.+.. |+.+.+++ ..|.-.--++-..++.+ |... .+.
T Consensus 1 m~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i-~~G~lvpdei~~~lv~~~l~~~~~~g 79 (223)
T PRK14529 1 MNILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYI-DRGDLVPDDITIPMILETLKQDGKNG 79 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHH-hccCcchHHHHHHHHHHHHhccCCCc
Confidence 479999999999999999999999999999999887643 23345554 34555444444444443 3222 233
Q ss_pred EEEcCCCCCcccCcHHHHHHH----h-c----CcEEEEEcChhhhchhhhhhhc
Q 019172 259 VVATLGGQQGAAARADKWQHL----Y-A----GFTVWLSQTEAMGKLLRVFVLS 303 (345)
Q Consensus 259 VIAtGGG~~~avlr~~~r~~L----~-~----G~VV~Ld~s~a~~~~~Rv~v~~ 303 (345)
+|--|= +-+.+.-+.| . . ..||+|+++.++. ..|..-++
T Consensus 80 ~iLDGf-----PRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l-~~Rl~~R~ 127 (223)
T PRK14529 80 WLLDGF-----PRNKVQAEKLWEALQKEGMKLDYVIEILLPREVA-KNRIMGRR 127 (223)
T ss_pred EEEeCC-----CCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHH-HHHhhCCc
Confidence 333332 4444433332 1 1 4699999999876 45533333
No 84
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=98.47 E-value=3.7e-07 Score=72.68 Aligned_cols=83 Identities=20% Similarity=0.484 Sum_probs=68.2
Q ss_pred eEEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeeccc-ceeehccc
Q 019172 81 YEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDED-QLVINLKK 159 (345)
Q Consensus 81 y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd~-~~~~~~k~ 159 (345)
|.|+|+..|+.+.|++|. ...++++.|.+...++.+.+.+. ..++ +++||..|.|.++.|.+++. .+.+.++|
T Consensus 1 Y~W~Qt~~~V~v~i~~p~--~~~~~dv~v~~~~~~l~v~~~~~---~~~~-~g~L~~~I~~d~Stw~i~~~~~l~i~L~K 74 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPE--DTTKEDIRIKFLPDHISIALKDQ---APLL-EGKLYSSIDHESSTWIIKENKSLEVSLIK 74 (85)
T ss_pred CccEEeCCEEEEEEECCC--CCChhhEEEEEecCEEEEEeCCC---CeEE-eCcccCcccccCcEEEEeCCCEEEEEEEE
Confidence 899999999999999985 45788999999889999987522 2345 48999999999999999766 48999998
Q ss_pred cCCCCCcchh
Q 019172 160 QDPELKWPDI 169 (345)
Q Consensus 160 ~~~~~~~~~~ 169 (345)
.....-||..
T Consensus 75 ~~~~~~W~~L 84 (85)
T cd06493 75 KDEGPTWPEL 84 (85)
T ss_pred CCCCcccccc
Confidence 7766667754
No 85
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.46 E-value=7.5e-07 Score=67.61 Aligned_cols=79 Identities=27% Similarity=0.548 Sum_probs=64.8
Q ss_pred cceEEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeecccceeehcc
Q 019172 79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLK 158 (345)
Q Consensus 79 ~~y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd~~~~~~~k 158 (345)
++|.|.|+..++.+.|++++.+ .++.++.|++.++++.|.+........+++ ..||..|.|.++.|.+++..+.+.++
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~-~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~-~~L~~~I~~~~s~~~~~~~~i~i~L~ 78 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVD-ISKEDVKVDFTDTSLSVSIKSGDGKEYLLE-GELFGEIDPDESTWKVKDNKIEITLK 78 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTT-SSGGGEEEEEETTEEEEEEEETTSCEEEEE-EEBSS-BECCCEEEEEETTEEEEEEE
T ss_pred CCeEEEECCCEEEEEEEEcCCC-CChHHeEEEEEeeEEEEEEEccCCceEEEE-EEEeeeEcchhcEEEEECCEEEEEEE
Confidence 5899999999999999996644 557799999999999999885554555566 77999999999999999998888776
Q ss_pred c
Q 019172 159 K 159 (345)
Q Consensus 159 ~ 159 (345)
|
T Consensus 79 K 79 (79)
T PF04969_consen 79 K 79 (79)
T ss_dssp B
T ss_pred C
Confidence 4
No 86
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.45 E-value=9e-07 Score=76.97 Aligned_cols=101 Identities=16% Similarity=0.148 Sum_probs=59.7
Q ss_pred EEEEcCCCCChHHHHHHHHHhh---C--CceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcC
Q 019172 189 IFLVGDSTEVNEKVALELAVGL---G--YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATL 263 (345)
Q Consensus 189 IvLIG~~GSGKSTVAk~LA~~L---g--~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtG 263 (345)
|+|+|.+||||||+++.|++.+ | ..++|.|.+.....+. .. +..+...+.++.+.. ..+.+..++..||...
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~-~~-~~~~~~~~~~~~~~~-~a~~l~~~G~~VIid~ 78 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKD-LG-FSREDREENIRRIAE-VAKLLADAGLIVIAAF 78 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhc-cC-CCcchHHHHHHHHHH-HHHHHHhCCCEEEEcc
Confidence 7899999999999999999999 5 4567888876544321 11 112222344444332 2334444444455433
Q ss_pred CCCCcccCcHHHHHHHh---c---CcEEEEEcChhhhchhh
Q 019172 264 GGQQGAAARADKWQHLY---A---GFTVWLSQTEAMGKLLR 298 (345)
Q Consensus 264 GG~~~avlr~~~r~~L~---~---G~VV~Ld~s~a~~~~~R 298 (345)
+ ...++.|+.++ . -.+|||++|.+.. ..|
T Consensus 79 ~-----~~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~-~~R 113 (149)
T cd02027 79 I-----SPYREDREAARKIIGGGDFLEVFVDTPLEVC-EQR 113 (149)
T ss_pred C-----CCCHHHHHHHHHhcCCCCEEEEEEeCCHHHH-HHh
Confidence 3 24455555443 1 2479999998854 444
No 87
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=98.44 E-value=1.3e-07 Score=95.14 Aligned_cols=51 Identities=25% Similarity=0.254 Sum_probs=43.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcC---chhhhhhccChH
Q 019172 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ---TIDSWMLAEGSD 239 (345)
Q Consensus 188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~---sI~ei~~~~Gee 239 (345)
.|.|+|.+||||||+++.|++ +|++++|+|++..+.+.. .+.++++..|++
T Consensus 3 ~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~ 56 (395)
T PRK03333 3 RIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDD 56 (395)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChH
Confidence 589999999999999999998 899999999998886632 356677777776
No 88
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=98.43 E-value=9.1e-07 Score=70.68 Aligned_cols=90 Identities=19% Similarity=0.395 Sum_probs=74.7
Q ss_pred cceEEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeecccceeehcc
Q 019172 79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLK 158 (345)
Q Consensus 79 ~~y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd~~~~~~~k 158 (345)
++|.|+|+..+|.+.|.+++......+++.|.+..+++.|.+.+.....-.+..++||..|.|.++.|.+.+..+.+.++
T Consensus 2 ~~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L~ 81 (92)
T cd06468 2 TKYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITLA 81 (92)
T ss_pred ceeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccccEEEEeCCEEEEEEE
Confidence 48999999999999999998554457899999999999999876433343455578999999999999999999999999
Q ss_pred ccCCCCCcchh
Q 019172 159 KQDPELKWPDI 169 (345)
Q Consensus 159 ~~~~~~~~~~~ 169 (345)
|... ..||.+
T Consensus 82 K~~~-~~W~~L 91 (92)
T cd06468 82 KKKE-KKWESL 91 (92)
T ss_pred eCCC-CccCcc
Confidence 9876 567653
No 89
>PLN02422 dephospho-CoA kinase
Probab=98.40 E-value=2.6e-06 Score=80.43 Aligned_cols=53 Identities=15% Similarity=0.130 Sum_probs=41.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHc--C-chhhhhhccChHHH
Q 019172 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAK--Q-TIDSWMLAEGSDSV 241 (345)
Q Consensus 188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g--~-sI~ei~~~~Gee~F 241 (345)
.|.|+|.+||||||+++.|+ .+|++++|+|++..+.+. . ...++.+..|++.+
T Consensus 3 ~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il 58 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDIL 58 (232)
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhc
Confidence 58999999999999999999 589999999999776652 1 24455555565544
No 90
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=98.40 E-value=8.1e-07 Score=69.61 Aligned_cols=83 Identities=27% Similarity=0.513 Sum_probs=70.2
Q ss_pred eEEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeecc-cceeehccc
Q 019172 81 YEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDE-DQLVINLKK 159 (345)
Q Consensus 81 y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd-~~~~~~~k~ 159 (345)
|.|+|+..++.+.|.+|. ..+.+++.|++...++.|++.+. ..+++ ++||.+|.|.++.|.+++ ..+.+.++|
T Consensus 1 y~W~Qt~~~V~i~i~~~~--~~~~~dv~v~~~~~~l~v~~~~~---~~~l~-~~L~~~I~~~~s~w~~~~~~~v~i~L~K 74 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPE--GTKSKDVKVEITPKHLKVGVKGG---EPLLD-GELYAKVKVDESTWTLEDGKLLEITLEK 74 (85)
T ss_pred CEEEeeCCEEEEEEECCC--CCcceeEEEEEEcCEEEEEECCC---CceEc-CcccCceeEcCCEEEEeCCCEEEEEEEE
Confidence 899999999999999987 34578999999999999998752 23455 899999999999999999 999999999
Q ss_pred cCCCCCcchh
Q 019172 160 QDPELKWPDI 169 (345)
Q Consensus 160 ~~~~~~~~~~ 169 (345)
.+....||..
T Consensus 75 ~~~~~~W~~L 84 (85)
T cd06467 75 RNEGEWWPSL 84 (85)
T ss_pred CCCCcccccc
Confidence 8765567653
No 91
>PRK08356 hypothetical protein; Provisional
Probab=98.36 E-value=2.6e-06 Score=76.77 Aligned_cols=35 Identities=20% Similarity=0.184 Sum_probs=30.6
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHH
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL 221 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lI 221 (345)
.+.|+|+|+|||||||+++.|++ +|++.|.+.+.+
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~~-~g~~~is~~~~~ 39 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFEE-KGFCRVSCSDPL 39 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH-CCCcEEeCCCcc
Confidence 36789999999999999999965 899999998743
No 92
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.36 E-value=1.3e-06 Score=81.19 Aligned_cols=37 Identities=27% Similarity=0.303 Sum_probs=33.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHH
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET 223 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~ 223 (345)
+.|.|.|++||||||+++.||+.||++++|.|++...
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~ 39 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRA 39 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHH
Confidence 5689999999999999999999999999999987643
No 93
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.34 E-value=2.2e-06 Score=79.78 Aligned_cols=39 Identities=28% Similarity=0.285 Sum_probs=35.3
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLET 223 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~ 223 (345)
..+.|.|.|++||||||+|+.||+.||++++|.|.++..
T Consensus 3 ~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~ 41 (225)
T PRK00023 3 KAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA 41 (225)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence 357899999999999999999999999999999997543
No 94
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=98.32 E-value=4.2e-06 Score=76.54 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=32.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH
Q 019172 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (345)
Q Consensus 188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~ 225 (345)
.|.|+|.+||||||+++.|+. +|++++|+|++..+..
T Consensus 3 ~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~ 39 (200)
T PRK14734 3 RIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIV 39 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHH
Confidence 588999999999999999997 8999999998765543
No 95
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.30 E-value=2.8e-06 Score=76.08 Aligned_cols=35 Identities=23% Similarity=0.183 Sum_probs=31.0
Q ss_pred EEEEcCCCCChHHHHHHHHHhh---CCceeeCcHHHHH
Q 019172 189 IFLVGDSTEVNEKVALELAVGL---GYTPLSTKELLET 223 (345)
Q Consensus 189 IvLIG~~GSGKSTVAk~LA~~L---g~~fID~D~lIE~ 223 (345)
|.|+|++||||||+++.|+..+ +..++.+|+++..
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~ 39 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKD 39 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccc
Confidence 6799999999999999999998 4789999998743
No 96
>PLN02842 nucleotide kinase
Probab=98.30 E-value=5.1e-06 Score=86.36 Aligned_cols=119 Identities=13% Similarity=0.070 Sum_probs=70.5
Q ss_pred EEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH------HcCchhhhhhccChHHHHHHHHHHHH-HHhc----CCCE
Q 019172 190 FLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF------AKQTIDSWMLAEGSDSVVNGECDVLE-SLSS----HVRA 258 (345)
Q Consensus 190 vLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~------~g~sI~ei~~~~Gee~FRelE~~vL~-~L~~----~~~~ 258 (345)
+|+|++||||||+++.||+.+|+.++++++++.+. .|..+.+++. .|...-.+.-..++. ++.. ..++
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~-~G~lvPdeiv~~ll~drl~~~~~~~~G~ 79 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMN-SGRLVPDEIVIAMVTGRLSREDAKEKGW 79 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHh-CCCCCcHHHHHHHHHHHHhCccccCCcE
Confidence 47999999999999999999999999999998654 2333555553 232111111122222 2211 2345
Q ss_pred EEEcCCCCCcccCcHHHHHHHh-----cCcEEEEEcChhhhchhhhhhhccccccccccceee
Q 019172 259 VVATLGGQQGAAARADKWQHLY-----AGFTVWLSQTEAMGKLLRVFVLSLHLRSVTSYFVRL 316 (345)
Q Consensus 259 VIAtGGG~~~avlr~~~r~~L~-----~G~VV~Ld~s~a~~~~~Rv~v~~~h~R~~~~~~~~l 316 (345)
|| .|- +-+....+.|. -..+|||+++.++. ..|..-+..+.-....|+...
T Consensus 80 IL-DGf-----PRt~~Qa~~Le~~~~~PDlVI~LDvpdevl-leRl~gR~~dp~tG~iYh~~~ 135 (505)
T PLN02842 80 LL-DGY-----PRSFAQAQSLEKLKIRPDIFILLDVPDEIL-IDRCVGRRLDPVTGKIYHIKN 135 (505)
T ss_pred EE-eCC-----CCcHHHHHHHHhcCCCCCEEEEEeCCHHHH-HHHHhccccccccCCcccccc
Confidence 66 442 44444444453 25799999999876 555433334443444444443
No 97
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.29 E-value=7.1e-07 Score=79.48 Aligned_cols=36 Identities=22% Similarity=0.195 Sum_probs=33.9
Q ss_pred EEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH
Q 019172 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (345)
Q Consensus 189 IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~ 225 (345)
|.|+|.+||||||+++.|++ +|++++|+|++..+.+
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~ 37 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVY 37 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhh
Confidence 78999999999999999999 9999999999988765
No 98
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.28 E-value=1.7e-06 Score=91.37 Aligned_cols=101 Identities=10% Similarity=0.117 Sum_probs=63.3
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh-----CCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCC-E
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVR-A 258 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L-----g~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~-~ 258 (345)
++.-|+++|++||||||+|+.|++.| ++.++|.|++.....+. . .+-.+..+.+++.+- ++...+..... +
T Consensus 459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~-~-~~~~~~r~~~~~~l~-~~a~~~~~~G~~V 535 (632)
T PRK05506 459 KPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRD-L-GFSDADRVENIRRVA-EVARLMADAGLIV 535 (632)
T ss_pred CcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCC-C-CCCHHHHHHHHHHHH-HHHHHHHhCCCEE
Confidence 47789999999999999999999997 46899999987543321 1 111222344455542 22223333333 3
Q ss_pred EEEcCCCCCcccCcHHHHHHHh----c-C-cEEEEEcChhhh
Q 019172 259 VVATLGGQQGAAARADKWQHLY----A-G-FTVWLSQTEAMG 294 (345)
Q Consensus 259 VIAtGGG~~~avlr~~~r~~L~----~-G-~VV~Ld~s~a~~ 294 (345)
|+++. ..+++.|+.++ . + .+|||+++.+..
T Consensus 536 ivda~------~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~ 571 (632)
T PRK05506 536 LVSFI------SPFREERELARALHGEGEFVEVFVDTPLEVC 571 (632)
T ss_pred EEECC------CCCHHHHHHHHHhcccCCeEEEEECCCHHHH
Confidence 33432 35556666554 1 3 689999998865
No 99
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.27 E-value=8e-07 Score=90.74 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=52.5
Q ss_pred cCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH--HHH-HHHcCchhhhhhccChHHHHHHHH
Q 019172 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE--LLE-TFAKQTIDSWMLAEGSDSVVNGEC 246 (345)
Q Consensus 184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~--lIE-~~~g~sI~ei~~~~Gee~FRelE~ 246 (345)
..+++|+|+|++|+|||++|+.||+.++.+|++.|. +.+ ...|+.+.++++..++.+|+..+.
T Consensus 45 ~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~ 110 (441)
T TIGR00390 45 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKE 110 (441)
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999999999999999994 444 356888888888888888765443
No 100
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.27 E-value=1.7e-06 Score=90.13 Aligned_cols=40 Identities=20% Similarity=0.206 Sum_probs=36.9
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF 224 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~ 224 (345)
.++.|.|.|++||||||+++.||+.||+.++|+|.+....
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~ 322 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAV 322 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehHH
Confidence 5688999999999999999999999999999999987654
No 101
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.22 E-value=8.2e-06 Score=72.35 Aligned_cols=28 Identities=21% Similarity=0.044 Sum_probs=25.3
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCC
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGY 212 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~ 212 (345)
+++.|+|.|.+||||||+++.||+.|+.
T Consensus 2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 2 RGMFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999999953
No 102
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.22 E-value=5.7e-06 Score=74.82 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=33.6
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh---CCceeeCcHHHHH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL---GYTPLSTKELLET 223 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L---g~~fID~D~lIE~ 223 (345)
++..|.|+|.+||||||+++.|++.+ .+.+++.|+++..
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~ 46 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKD 46 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccC
Confidence 45679999999999999999999999 3567899998653
No 103
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=98.21 E-value=1.2e-05 Score=76.57 Aligned_cols=38 Identities=13% Similarity=0.026 Sum_probs=35.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH
Q 019172 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (345)
Q Consensus 188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~ 225 (345)
.|.|+|..||||||++++|++.+|++.||+|.+..+..
T Consensus 3 iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~ 40 (244)
T PTZ00451 3 LIGLTGGIACGKSTVSRILREEHHIEVIDADLVVRELQ 40 (244)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHH
Confidence 48899999999999999999999999999999976655
No 104
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=98.14 E-value=7.3e-06 Score=73.80 Aligned_cols=100 Identities=18% Similarity=0.184 Sum_probs=63.0
Q ss_pred cCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHH--HHHHHHHH---HHHhcCCCE
Q 019172 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSV--VNGECDVL---ESLSSHVRA 258 (345)
Q Consensus 184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~F--RelE~~vL---~~L~~~~~~ 258 (345)
....||+|+|-||+||||+|..||+.+|+++|++-+++++.. ++....+++= --=|..++ +-+..+++.
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~------l~~gyDE~y~c~i~DEdkv~D~Le~~m~~Gg~ 78 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENN------LYEGYDEEYKCHILDEDKVLDELEPLMIEGGN 78 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhc------chhcccccccCccccHHHHHHHHHHHHhcCCc
Confidence 356899999999999999999999999999999999987642 1111111110 00122222 222233566
Q ss_pred EEEcCCCCCcccCcHHHHHHHhcCcEEEEEcChhhhchhh
Q 019172 259 VVATLGGQQGAAARADKWQHLYAGFTVWLSQTEAMGKLLR 298 (345)
Q Consensus 259 VIAtGGG~~~avlr~~~r~~L~~G~VV~Ld~s~a~~~~~R 298 (345)
||..-|. -+-++-| -+.||-|..|-... +.|
T Consensus 79 IVDyHgC----d~Fperw----fdlVvVLr~~~s~L-Y~R 109 (176)
T KOG3347|consen 79 IVDYHGC----DFFPERW----FDLVVVLRTPNSVL-YDR 109 (176)
T ss_pred EEeeccc----Cccchhh----eeEEEEEecCchHH-HHH
Confidence 7764432 2333322 35688888888866 666
No 105
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.13 E-value=1.5e-05 Score=69.63 Aligned_cols=30 Identities=27% Similarity=0.210 Sum_probs=26.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHhh---CCceeeC
Q 019172 188 SIFLVGDSTEVNEKVALELAVGL---GYTPLST 217 (345)
Q Consensus 188 ~IvLIG~~GSGKSTVAk~LA~~L---g~~fID~ 217 (345)
-|+|.|++||||||+++.|++.| |+.++..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~ 34 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLT 34 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 48999999999999999999999 7666654
No 106
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=98.10 E-value=1.5e-05 Score=72.85 Aligned_cols=36 Identities=19% Similarity=0.151 Sum_probs=32.2
Q ss_pred EEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH
Q 019172 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (345)
Q Consensus 189 IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~ 225 (345)
|.|+|.+||||||+++.|++ +|+.++|.|++..+..
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~ 37 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYT 37 (196)
T ss_pred EEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHH
Confidence 78999999999999999976 6999999999876654
No 107
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.07 E-value=1.2e-05 Score=73.92 Aligned_cols=106 Identities=15% Similarity=0.145 Sum_probs=59.6
Q ss_pred hcCCceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCC
Q 019172 183 LLKGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVR 257 (345)
Q Consensus 183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~ 257 (345)
..++..|+++|.+||||||||.+|+++|- ..++|+|.+..-.. ..+. +-.++..+-.|+. .++.+-+.. .+
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~-~dLg-Fs~edR~eniRRv-aevAkll~d-aG 95 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLN-RDLG-FSREDRIENIRRV-AEVAKLLAD-AG 95 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhccc-CCCC-CChHHHHHHHHHH-HHHHHHHHH-CC
Confidence 33567999999999999999999999874 66899999765433 1111 1112222223222 123333333 34
Q ss_pred EEEEcC--CCCCcccCcHHHHHHHhcC--cEEEEEcChhhh
Q 019172 258 AVVATL--GGQQGAAARADKWQHLYAG--FTVWLSQTEAMG 294 (345)
Q Consensus 258 ~VIAtG--GG~~~avlr~~~r~~L~~G--~VV~Ld~s~a~~ 294 (345)
.|+-|. +=. ...|...|+.+..| +-||+++|.+.-
T Consensus 96 ~iviva~ISP~--r~~R~~aR~~~~~~~FiEVyV~~pl~vc 134 (197)
T COG0529 96 LIVIVAFISPY--REDRQMARELLGEGEFIEVYVDTPLEVC 134 (197)
T ss_pred eEEEEEeeCcc--HHHHHHHHHHhCcCceEEEEeCCCHHHH
Confidence 333222 210 11233344444443 578999998754
No 108
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=98.07 E-value=5.3e-06 Score=76.75 Aligned_cols=38 Identities=24% Similarity=0.258 Sum_probs=34.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~ 225 (345)
+-|-|+|++||||||+++.+++ +|++.+|+|+.+.+..
T Consensus 3 ~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~ 40 (201)
T COG0237 3 LIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVV 40 (201)
T ss_pred eEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHH
Confidence 4688999999999999999999 9999999999987544
No 109
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.07 E-value=2.5e-05 Score=81.66 Aligned_cols=85 Identities=14% Similarity=0.108 Sum_probs=58.6
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCC
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGG 265 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG 265 (345)
..-|+++|.|||||||+|+.+++.+|+..|+.|.+-. +..+...+.+.|..+..+||....
T Consensus 369 p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~------------------~~~~~~~a~~~L~~G~sVVIDaTn- 429 (526)
T TIGR01663 369 CEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGS------------------TQNCLTACERALDQGKRCAIDNTN- 429 (526)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHH------------------HHHHHHHHHHHHhCCCcEEEECCC-
Confidence 4568899999999999999999999999999998610 222333344455666667776544
Q ss_pred CCcccCcHHHHHHH----h-cC---cEEEEEcChhhh
Q 019172 266 QQGAAARADKWQHL----Y-AG---FTVWLSQTEAMG 294 (345)
Q Consensus 266 ~~~avlr~~~r~~L----~-~G---~VV~Ld~s~a~~ 294 (345)
.+++.|+.+ + .| .+||+++|.++.
T Consensus 430 -----~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~ 461 (526)
T TIGR01663 430 -----PDAASRAKFLQCARAAGIPCRCFLFNAPLAQA 461 (526)
T ss_pred -----CCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHH
Confidence 333333322 2 34 478899988754
No 110
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.04 E-value=5.1e-05 Score=69.53 Aligned_cols=37 Identities=14% Similarity=0.123 Sum_probs=32.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF 224 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~ 224 (345)
..|.|+|.+||||||+++.|+. +|++.+|+|.+..+.
T Consensus 6 ~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~ 42 (208)
T PRK14731 6 FLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRVAKEL 42 (208)
T ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHH
Confidence 5688999999999999999997 899999999775544
No 111
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.95 E-value=4.6e-05 Score=68.87 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=29.7
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh---CCceeeCcHHH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL---GYTPLSTKELL 221 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L---g~~fID~D~lI 221 (345)
.+.-|+|.|.+||||||++..+...+ ++..||.|++.
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r 53 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFR 53 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHH
Confidence 46678889999999999999999987 79999999973
No 112
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=97.93 E-value=1.7e-05 Score=71.10 Aligned_cols=93 Identities=16% Similarity=0.227 Sum_probs=52.9
Q ss_pred EEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH---cCchhhh---h----------------------hccChHH
Q 019172 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA---KQTIDSW---M----------------------LAEGSDS 240 (345)
Q Consensus 189 IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~---g~sI~ei---~----------------------~~~Gee~ 240 (345)
|.|.|..|||+++||+.||+.||++|+|- +++++.+ |.+...+ - ...-.+.
T Consensus 2 ITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~-~ii~~~a~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (179)
T PF13189_consen 2 ITISRQYGSGGREIAERLAEKLGYPYYDR-EIIEEAAKESGISEEEFEEFDEKKPFNSFLYDFFRGMFPGSFEDHPDDDK 80 (179)
T ss_dssp EEEEE-TTSSHHHHHHHHHHHCT--EE-H-HHHHHCT------------SS-HHH--HH---HHS--------------H
T ss_pred EEECCCCCCChHHHHHHHHHHcCCccCCH-HHHHHHHHHccCCHHHHHHHhccccCcchhhhhhccccccccccccHHHH
Confidence 78899999999999999999999999999 6666544 2222111 0 1111334
Q ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCcccCcHHHHHHHh---cCcEEEEEcChh
Q 019172 241 VVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLY---AGFTVWLSQTEA 292 (345)
Q Consensus 241 FRelE~~vL~~L~~~~~~VIAtGGG~~~avlr~~~r~~L~---~G~VV~Ld~s~a 292 (345)
+...+.+++.++.+.+++||.-=|| ++ .|+ +..-|||.+|.+
T Consensus 81 ~~~~~~~~i~~la~~~~~Vi~GR~a---------~~-il~~~~~~l~V~i~A~~~ 125 (179)
T PF13189_consen 81 IFRAQSEIIRELAAKGNCVIVGRCA---------NY-ILRDIPNVLHVFIYAPLE 125 (179)
T ss_dssp HHHHHHHHHHHHHH---EEEESTTH---------HH-HTTT-TTEEEEEEEE-HH
T ss_pred HHHHHHHHHHHHhccCCEEEEecCH---------hh-hhCCCCCeEEEEEECCHH
Confidence 4455667788887777777753333 12 444 246899998877
No 113
>PLN02840 tRNA dimethylallyltransferase
Probab=97.92 E-value=2.6e-05 Score=79.58 Aligned_cols=83 Identities=17% Similarity=0.121 Sum_probs=57.8
Q ss_pred hhcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHH--------------HHHHHcC-----chhhhhhccChHHHH
Q 019172 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL--------------LETFAKQ-----TIDSWMLAEGSDSVV 242 (345)
Q Consensus 182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~l--------------IE~~~g~-----sI~ei~~~~Gee~FR 242 (345)
+..+++.|+|+|++||||||++..||+.++.++|.+|.+ .++..+. .+-+.-+...-..|.
T Consensus 17 ~~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~F~ 96 (421)
T PLN02840 17 KTKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGAFF 96 (421)
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHHHH
Confidence 344566799999999999999999999999999999984 1222221 122222334455677
Q ss_pred HHHHHHHHHHhcCCCEEEEcCC
Q 019172 243 NGECDVLESLSSHVRAVVATLG 264 (345)
Q Consensus 243 elE~~vL~~L~~~~~~VIAtGG 264 (345)
+.-.++++++.+.+...|.+||
T Consensus 97 ~~A~~~I~~i~~rgkiPIvVGG 118 (421)
T PLN02840 97 DDARRATQDILNRGRVPIVAGG 118 (421)
T ss_pred HHHHHHHHHHHhcCCCEEEEcC
Confidence 7667778888777665555555
No 114
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.92 E-value=3.6e-05 Score=75.44 Aligned_cols=79 Identities=16% Similarity=0.113 Sum_probs=52.3
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHH--------------HHHHcC-----chhhhhhccChHHHHHHHH
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL--------------ETFAKQ-----TIDSWMLAEGSDSVVNGEC 246 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lI--------------E~~~g~-----sI~ei~~~~Gee~FRelE~ 246 (345)
++-|+|+|++|||||++|..||+.++..+|+.|..- ++..|. ++-+.-+......|.+.-.
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~a~ 83 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRDAL 83 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHHHH
Confidence 457999999999999999999999999999999951 222221 1112222233445666556
Q ss_pred HHHHHHhcCCCEEEEcCC
Q 019172 247 DVLESLSSHVRAVVATLG 264 (345)
Q Consensus 247 ~vL~~L~~~~~~VIAtGG 264 (345)
..++++.+.+..+|-+||
T Consensus 84 ~~i~~i~~~gk~pIlvGG 101 (307)
T PRK00091 84 AAIADILARGKLPILVGG 101 (307)
T ss_pred HHHHHHHhCCCCEEEECc
Confidence 667776655554444455
No 115
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.91 E-value=1.5e-05 Score=81.58 Aligned_cols=57 Identities=12% Similarity=0.136 Sum_probs=47.0
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHH-HHH--HHcCchhhhhhccChHHH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL-LET--FAKQTIDSWMLAEGSDSV 241 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~l-IE~--~~g~sI~ei~~~~Gee~F 241 (345)
.+.+|+|+|++|+|||++|+.||+.++.+|+..|.- +.+ ..|.+..++++.-.+++|
T Consensus 49 ~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~ 108 (443)
T PRK05201 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAV 108 (443)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999963 333 557777777777667765
No 116
>COG0645 Predicted kinase [General function prediction only]
Probab=97.91 E-value=6.5e-05 Score=68.28 Aligned_cols=102 Identities=17% Similarity=0.009 Sum_probs=64.7
Q ss_pred eEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHH--------HHHHHHHHHHHHhcCCCEE
Q 019172 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDS--------VVNGECDVLESLSSHVRAV 259 (345)
Q Consensus 188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~--------FRelE~~vL~~L~~~~~~V 259 (345)
-+++.|.||+||||+|+.|++.||...|..|+......| ++++-+..-..+ |-++......-|.. ...|
T Consensus 3 l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g--~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~~-G~~V 79 (170)
T COG0645 3 LVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFG--VPEETRGPAGLYSPAATAAVYDELLGRAELLLSS-GHSV 79 (170)
T ss_pred EEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcC--CcccccCCCCCCcHHHHHHHHHHHHHHHHHHHhC-CCcE
Confidence 467899999999999999999999999999997766667 332222221122 22222222222333 4445
Q ss_pred EEcCCCCCcccCcHHHHHHHh-----cC---cEEEEEcChhhhchhh
Q 019172 260 VATLGGQQGAAARADKWQHLY-----AG---FTVWLSQTEAMGKLLR 298 (345)
Q Consensus 260 IAtGGG~~~avlr~~~r~~L~-----~G---~VV~Ld~s~a~~~~~R 298 (345)
|.-++ ..++..|+... .| ..|++.+++++. .+|
T Consensus 80 VlDa~-----~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~-~~r 120 (170)
T COG0645 80 VLDAT-----FDRPQERALARALARDVGVAFVLIRLEAPEEVL-RGR 120 (170)
T ss_pred EEecc-----cCCHHHHHHHHHHHhccCCceEEEEcCCcHHHH-HHH
Confidence 55554 46676666554 12 358888888866 444
No 117
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.91 E-value=6.1e-05 Score=68.35 Aligned_cols=38 Identities=26% Similarity=0.253 Sum_probs=32.6
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhC---CceeeCcHHHH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLG---YTPLSTKELLE 222 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg---~~fID~D~lIE 222 (345)
++..|.|+|++||||||+++.|+..++ ..++..|+++.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~ 45 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYK 45 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccccc
Confidence 456788999999999999999999886 67888888753
No 118
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.91 E-value=3.7e-05 Score=71.06 Aligned_cols=103 Identities=14% Similarity=0.081 Sum_probs=60.7
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCc-----e-eeCcHHHHH-----HHcCchh-hhhhccChHHHHHHHHHHHHHH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYT-----P-LSTKELLET-----FAKQTID-SWMLAEGSDSVVNGECDVLESL 252 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~-----f-ID~D~lIE~-----~~g~sI~-ei~~~~Gee~FRelE~~vL~~L 252 (345)
+..-|.|+|++||||||+++.|+..+... . +..|++... ..|.-.. ........+.+.+ ++..+
T Consensus 32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~----~l~~l 107 (229)
T PRK09270 32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGLAA----LLRRL 107 (229)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHHHHHH----HHHHH
Confidence 45678889999999999999999988632 2 677765421 1111000 0001111222222 22221
Q ss_pred h--------------------------cCCCEEEEcCCCCCcccCcHHHHHHHh--cCcEEEEEcChhhh
Q 019172 253 S--------------------------SHVRAVVATLGGQQGAAARADKWQHLY--AGFTVWLSQTEAMG 294 (345)
Q Consensus 253 ~--------------------------~~~~~VIAtGGG~~~avlr~~~r~~L~--~G~VV~Ld~s~a~~ 294 (345)
. ...++||..|++. ......|..++ .+.+|||+++.+..
T Consensus 108 ~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~---l~~~~~~~~l~~~~D~vi~v~~~~~~~ 174 (229)
T PRK09270 108 RAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYL---LLDEEPWRRLAGLFDFTIFLDAPAEVL 174 (229)
T ss_pred HcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcce---eeccccHHHHHhhCCEEEEEECCHHHH
Confidence 1 0234788888873 44455777665 47899999999854
No 119
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.89 E-value=1.1e-05 Score=65.74 Aligned_cols=31 Identities=26% Similarity=0.298 Sum_probs=27.7
Q ss_pred EEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKE 219 (345)
Q Consensus 189 IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~ 219 (345)
|+|.|++|+||||+++.+|+.++++++..|-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~ 31 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDG 31 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEET
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccc
Confidence 6899999999999999999999998865554
No 120
>PLN02748 tRNA dimethylallyltransferase
Probab=97.87 E-value=3.8e-05 Score=79.33 Aligned_cols=80 Identities=15% Similarity=0.150 Sum_probs=58.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHH--------------HHHHHcCc-----hhhhhhccChHHHHHHH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL--------------LETFAKQT-----IDSWMLAEGSDSVVNGE 245 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~l--------------IE~~~g~s-----I~ei~~~~Gee~FRelE 245 (345)
++..|+|+|+.|+|||++|..||+.++..+|++|.. .++..|.+ +-++-+...-..|++.-
T Consensus 21 ~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F~~~A 100 (468)
T PLN02748 21 KAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDFRDHA 100 (468)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHHHHHH
Confidence 456799999999999999999999999999999974 23333321 22233444556788877
Q ss_pred HHHHHHHhcCCCEEEEcCC
Q 019172 246 CDVLESLSSHVRAVVATLG 264 (345)
Q Consensus 246 ~~vL~~L~~~~~~VIAtGG 264 (345)
..+++++.+.+...|-+||
T Consensus 101 ~~~I~~I~~rgk~PIlVGG 119 (468)
T PLN02748 101 VPLIEEILSRNGLPVIVGG 119 (468)
T ss_pred HHHHHHHHhcCCCeEEEcC
Confidence 8888888777766665666
No 121
>PRK13973 thymidylate kinase; Provisional
Probab=97.86 E-value=0.00015 Score=66.57 Aligned_cols=33 Identities=30% Similarity=0.306 Sum_probs=30.0
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh---CCceeeC
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL---GYTPLST 217 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L---g~~fID~ 217 (345)
+|+=|+|-|..||||||+++.|++.| |++++-+
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~ 37 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT 37 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 46779999999999999999999999 8888866
No 122
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.86 E-value=4.2e-05 Score=58.51 Aligned_cols=29 Identities=31% Similarity=0.284 Sum_probs=24.0
Q ss_pred EEEEcCCCCChHHHHHHHHHhh---CCceeeC
Q 019172 189 IFLVGDSTEVNEKVALELAVGL---GYTPLST 217 (345)
Q Consensus 189 IvLIG~~GSGKSTVAk~LA~~L---g~~fID~ 217 (345)
|+|+|.+||||||+++.|++.| ++.+++.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~ 33 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE 33 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE
Confidence 7899999999999999999995 4444443
No 123
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=97.86 E-value=9.9e-06 Score=73.48 Aligned_cols=38 Identities=24% Similarity=0.266 Sum_probs=33.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~ 225 (345)
+-|.|+|..||||||++++|++ +|++.+|+|++..+.+
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~ 38 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELY 38 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCT
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHh
Confidence 3588999999999999999999 9999999999866554
No 124
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=97.85 E-value=4.6e-05 Score=57.97 Aligned_cols=83 Identities=30% Similarity=0.577 Sum_probs=69.7
Q ss_pred EeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeecccceeehccccCC
Q 019172 83 FSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDP 162 (345)
Q Consensus 83 ~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd~~~~~~~k~~~~ 162 (345)
|+|+..++.+.+++|+.. .+++.|++.+.++.|.+.+.......++ ..|+..|.|.++.|.+++..+.+.+.|...
T Consensus 1 W~Q~~~~v~i~v~~~~~~---~~~~~v~~~~~~l~i~~~~~~~~~~~~~-~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~ 76 (84)
T cd06463 1 WYQTLDEVTITIPLKDVT---KKDVKVEFTPKSLTVSVKGGGGKEYLLE-GELFGPIDPEESKWTVEDRKIEITLKKKEP 76 (84)
T ss_pred CcccccEEEEEEEcCCCC---ccceEEEEecCEEEEEeeCCCCCceEEe-eEccCccchhhcEEEEeCCEEEEEEEECCC
Confidence 789999999999999844 7799999989999999887533444566 569999999999999999999999999887
Q ss_pred CCCcchh
Q 019172 163 ELKWPDI 169 (345)
Q Consensus 163 ~~~~~~~ 169 (345)
...|+..
T Consensus 77 ~~~W~~l 83 (84)
T cd06463 77 GEWWPRL 83 (84)
T ss_pred CCCCccc
Confidence 6677753
No 125
>PRK06696 uridine kinase; Validated
Probab=97.85 E-value=4.7e-05 Score=70.11 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=31.0
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhh---CCceee--CcHHH
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGL---GYTPLS--TKELL 221 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~L---g~~fID--~D~lI 221 (345)
..-|.|.|.+||||||+|+.||+.| |.+.+- +|+++
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 4578889999999999999999999 666655 89886
No 126
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.84 E-value=5.5e-05 Score=67.91 Aligned_cols=34 Identities=21% Similarity=0.195 Sum_probs=30.7
Q ss_pred EEEEcCCCCChHHHHHHHHHhh-----CCceeeCcHHHH
Q 019172 189 IFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELLE 222 (345)
Q Consensus 189 IvLIG~~GSGKSTVAk~LA~~L-----g~~fID~D~lIE 222 (345)
|.|.|.+||||||+++.|++.| +...|.+|+++.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence 6789999999999999999997 467899999985
No 127
>PRK12338 hypothetical protein; Provisional
Probab=97.84 E-value=0.00015 Score=71.63 Aligned_cols=42 Identities=26% Similarity=0.156 Sum_probs=33.9
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCcee-eCcHHHHHHHc
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPL-STKELLETFAK 226 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fI-D~D~lIE~~~g 226 (345)
++..|+|.|.+|+||||+|+.||+++|+.++ ++|.+.+.+.|
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~ 45 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRG 45 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcC
Confidence 3567889999999999999999999999988 55555444444
No 128
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.82 E-value=7.7e-05 Score=68.25 Aligned_cols=35 Identities=11% Similarity=0.120 Sum_probs=32.1
Q ss_pred EEEEcCCCCChHHHHHHHHHhh-CCceeeCcHHHHH
Q 019172 189 IFLVGDSTEVNEKVALELAVGL-GYTPLSTKELLET 223 (345)
Q Consensus 189 IvLIG~~GSGKSTVAk~LA~~L-g~~fID~D~lIE~ 223 (345)
|.|.|.+||||||+|+.|++.+ +..+|.+|+++..
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~ 37 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKP 37 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCC
Confidence 7789999999999999999999 7999999998653
No 129
>PRK00698 tmk thymidylate kinase; Validated
Probab=97.81 E-value=0.00016 Score=64.18 Aligned_cols=26 Identities=19% Similarity=0.028 Sum_probs=24.2
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
+++-|+|.|+.||||||+++.|++.|
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999987
No 130
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.81 E-value=6.2e-05 Score=73.31 Aligned_cols=76 Identities=13% Similarity=0.136 Sum_probs=53.6
Q ss_pred EEEEcCCCCChHHHHHHHHHhhCCceeeCcHHH--------------HHHHcC-----chhhhhhccChHHHHHHHHHHH
Q 019172 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELL--------------ETFAKQ-----TIDSWMLAEGSDSVVNGECDVL 249 (345)
Q Consensus 189 IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lI--------------E~~~g~-----sI~ei~~~~Gee~FRelE~~vL 249 (345)
|+|+|++|+|||+++..||+.++..+|.+|.+- ++..|. ++-++-+...-..|.+.-.+.+
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~v~~f~~~a~~~i 81 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYSAADFQTLALNAI 81 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheEcHHHHHHHHHHHH
Confidence 789999999999999999999999999999951 122221 1222333444456666667777
Q ss_pred HHHhcCCCEEEEcCC
Q 019172 250 ESLSSHVRAVVATLG 264 (345)
Q Consensus 250 ~~L~~~~~~VIAtGG 264 (345)
+++.+.+...|.+||
T Consensus 82 ~~~~~~g~~pi~vGG 96 (287)
T TIGR00174 82 ADITARGKIPLLVGG 96 (287)
T ss_pred HHHHhCCCCEEEEcC
Confidence 887776665665666
No 131
>PRK07667 uridine kinase; Provisional
Probab=97.80 E-value=0.00011 Score=66.30 Aligned_cols=38 Identities=8% Similarity=0.035 Sum_probs=32.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHHHHHH
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETF 224 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~lIE~~ 224 (345)
.-|.|.|.+||||||+++.|++.|+ ...++.|+++...
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~ 60 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVER 60 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchh
Confidence 4677899999999999999999874 5599999976543
No 132
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=97.79 E-value=8.9e-05 Score=61.35 Aligned_cols=85 Identities=19% Similarity=0.364 Sum_probs=70.3
Q ss_pred ceEEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCC-ccceeeeccccccccCCCceeeecccceeehcc
Q 019172 80 QYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGS-FITLIETNQLFDKIKPTETIWYIDEDQLVINLK 158 (345)
Q Consensus 80 ~y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~-~~tlIe~k~l~~~i~p~Etiw~~Dd~~~~~~~k 158 (345)
.|.|+|+..+|.+.|++++ .+++.|.+...++.|++..... ..-.++ ..||..|.|.++.|-+.+..+.|.|+
T Consensus 2 ~~~W~Qt~~~V~i~i~~~~-----~~~~~V~~~~~~l~v~~~~~~~~~~y~~~-~~L~~~I~pe~s~~~v~~~kveI~L~ 75 (108)
T cd06465 2 PVLWAQRSDVVYLTIELPD-----AKDPKIKLEPTSLSFKAKGGGGGKKYEFD-LEFYKEIDPEESKYKVTGRQIEFVLR 75 (108)
T ss_pred ceeeeECCCEEEEEEEeCC-----CCCcEEEEECCEEEEEEEcCCCCeeEEEE-eEhhhhccccccEEEecCCeEEEEEE
Confidence 6999999999999999998 2889999999999999976432 223344 69999999999999999999999999
Q ss_pred ccCCCCCcchhH
Q 019172 159 KQDPELKWPDIV 170 (345)
Q Consensus 159 ~~~~~~~~~~~~ 170 (345)
|...+..|+.+.
T Consensus 76 K~~~~~~W~~L~ 87 (108)
T cd06465 76 KKEAGEYWPRLT 87 (108)
T ss_pred ECCCCCCCcccc
Confidence 977444677664
No 133
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.76 E-value=4.4e-05 Score=71.88 Aligned_cols=38 Identities=26% Similarity=0.261 Sum_probs=34.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF 224 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~ 224 (345)
..|.|=||+||||||+|+.||+.|||.|+|+..+....
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~ 42 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAV 42 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHHH
Confidence 67889999999999999999999999999999986543
No 134
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.72 E-value=9.2e-05 Score=66.28 Aligned_cols=27 Identities=22% Similarity=0.149 Sum_probs=24.9
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLG 211 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg 211 (345)
.++.|+|+|++||||||+++.|+..++
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 577899999999999999999999885
No 135
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.72 E-value=0.00019 Score=69.08 Aligned_cols=97 Identities=14% Similarity=0.015 Sum_probs=52.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEc
Q 019172 188 SIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVAT 262 (345)
Q Consensus 188 ~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAt 262 (345)
-|+|+|.|||||||+++.|++.+. ..+++-|++. +.-..+.....|...|..-....++.++...+||..
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~-----~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~D 77 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG-----IDRNDYADSKKEKEARGSLKSAVERALSKDTIVILD 77 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH------TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc-----cchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEe
Confidence 388999999999999999999743 4456644444 111123344455566665444455555556788877
Q ss_pred CCCCCcccCcHHHHHHH----h-cC---cEEEEEcChhhh
Q 019172 263 LGGQQGAAARADKWQHL----Y-AG---FTVWLSQTEAMG 294 (345)
Q Consensus 263 GGG~~~avlr~~~r~~L----~-~G---~VV~Ld~s~a~~ 294 (345)
+.- .-...|-.| + .+ -+||++++.+.-
T Consensus 78 d~n-----YiKg~RYelyclAr~~~~~~c~i~~~~~~e~~ 112 (270)
T PF08433_consen 78 DNN-----YIKGMRYELYCLARAYGTTFCVIYCDCPLETC 112 (270)
T ss_dssp S--------SHHHHHHHHHHHHHTT-EEEEEEEE--HHHH
T ss_pred CCc-----hHHHHHHHHHHHHHHcCCCEEEEEECCCHHHH
Confidence 663 333333333 3 22 389999998753
No 136
>PRK06761 hypothetical protein; Provisional
Probab=97.70 E-value=0.00018 Score=69.95 Aligned_cols=35 Identities=14% Similarity=-0.033 Sum_probs=29.3
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHH
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL 220 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~l 220 (345)
++-|+|+|++||||||+++.|++.|+...++.+.+
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~ 37 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELY 37 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEE
Confidence 45699999999999999999999999765555543
No 137
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.69 E-value=0.00011 Score=71.50 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=27.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE 219 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~ 219 (345)
.-|+|+|++||||||+++.|+ .+|+.++|.-.
T Consensus 7 ~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~~~ 38 (288)
T PRK05416 7 RLVIVTGLSGAGKSVALRALE-DLGYYCVDNLP 38 (288)
T ss_pred eEEEEECCCCCcHHHHHHHHH-HcCCeEECCcC
Confidence 469999999999999999996 56998886643
No 138
>COG4639 Predicted kinase [General function prediction only]
Probab=97.69 E-value=0.00024 Score=64.32 Aligned_cols=99 Identities=13% Similarity=0.021 Sum_probs=68.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Q 019172 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQ 267 (345)
Q Consensus 188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG~~ 267 (345)
-++|+|.+||||||.++. ..+....+++|++-.......-.+......++.++.++..+-+.|..+.-.||..-
T Consensus 4 LvvL~G~~~sGKsT~ak~--n~~~~~~lsld~~r~~lg~~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~tiidAt---- 77 (168)
T COG4639 4 LVVLRGASGSGKSTFAKE--NFLQNYVLSLDDLRLLLGVSASKENSQKNDELVWDILYKQLEQRLRRGKFTIIDAT---- 77 (168)
T ss_pred EEEEecCCCCchhHHHHH--hCCCcceecHHHHHHHhhhchhhhhccccHHHHHHHHHHHHHHHHHcCCeEEEEcc----
Confidence 478999999999999995 36788999999976644222223333444566788888777777777777788432
Q ss_pred cccCcHHHHHHHh-----cC---cEEEEEcChhhh
Q 019172 268 GAAARADKWQHLY-----AG---FTVWLSQTEAMG 294 (345)
Q Consensus 268 ~avlr~~~r~~L~-----~G---~VV~Ld~s~a~~ 294 (345)
-++++.|+.+. .| .+||++.|...-
T Consensus 78 --n~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c 110 (168)
T COG4639 78 --NLRREDRRKLIDLAKAYGYKIYAIVFDTPLELC 110 (168)
T ss_pred --cCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHH
Confidence 25666666553 13 478888888754
No 139
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.68 E-value=9.3e-05 Score=66.51 Aligned_cols=33 Identities=27% Similarity=0.203 Sum_probs=28.0
Q ss_pred EEEEcCCCCChHHHHHHHHHhhC---C------ceeeCcHHH
Q 019172 189 IFLVGDSTEVNEKVALELAVGLG---Y------TPLSTKELL 221 (345)
Q Consensus 189 IvLIG~~GSGKSTVAk~LA~~Lg---~------~fID~D~lI 221 (345)
|.|.|++||||||+|+.|+..|+ . .++..|.+.
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~ 43 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFY 43 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGB
T ss_pred EEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccc
Confidence 77899999999999999999998 2 366677764
No 140
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.62 E-value=0.0001 Score=64.57 Aligned_cols=27 Identities=19% Similarity=0.063 Sum_probs=23.8
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCC
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGY 212 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~ 212 (345)
++-|+|+|++||||||+++.|++.+..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCcc
Confidence 467999999999999999999997653
No 141
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.62 E-value=0.00013 Score=62.79 Aligned_cols=24 Identities=21% Similarity=0.113 Sum_probs=21.7
Q ss_pred EEEEcCCCCChHHHHHHHHHhhCC
Q 019172 189 IFLVGDSTEVNEKVALELAVGLGY 212 (345)
Q Consensus 189 IvLIG~~GSGKSTVAk~LA~~Lg~ 212 (345)
|+|+|++||||||+++.|++.+.-
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~ 25 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDP 25 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCc
Confidence 789999999999999999998653
No 142
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.60 E-value=5e-05 Score=61.68 Aligned_cols=22 Identities=32% Similarity=0.228 Sum_probs=21.5
Q ss_pred EEEEcCCCCChHHHHHHHHHhh
Q 019172 189 IFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 189 IvLIG~~GSGKSTVAk~LA~~L 210 (345)
|+|.|.+|+||||||+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999999
No 143
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=97.60 E-value=0.00054 Score=62.86 Aligned_cols=109 Identities=12% Similarity=0.023 Sum_probs=73.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhh-CCceeeCcHHHHHHH---cC--chhhhhhccChHHHHHHHHHHHHHHhcCC----
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGL-GYTPLSTKELLETFA---KQ--TIDSWMLAEGSDSVVNGECDVLESLSSHV---- 256 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~L-g~~fID~D~lIE~~~---g~--sI~ei~~~~Gee~FRelE~~vL~~L~~~~---- 256 (345)
+.++++|.||+|||||-+.+.+.+ ++.++.-.++.-+.+ |. .-+++ ..--.+.-+++..++.+++.+..
T Consensus 5 kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~glve~rD~~-Rklp~e~Q~~lq~~Aa~rI~~~~~~ii 83 (189)
T COG2019 5 KVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKKGLVEHRDEM-RKLPLENQRELQAEAAKRIAEMALEII 83 (189)
T ss_pred eEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHhCCcccHHHH-hcCCHHHHHHHHHHHHHHHHHhhhceE
Confidence 778999999999999999999999 888899888754443 21 22233 23344555666666666655543
Q ss_pred ---CEEEEcCCCCCcccCcHH-HHHHHhcCcEEEEEcChhhhchhh
Q 019172 257 ---RAVVATLGGQQGAAARAD-KWQHLYAGFTVWLSQTEAMGKLLR 298 (345)
Q Consensus 257 ---~~VIAtGGG~~~avlr~~-~r~~L~~G~VV~Ld~s~a~~~~~R 298 (345)
++.|-|.+|. .+.-|. -.+.|.-..+|.|.++++.+...|
T Consensus 84 vDtH~~IkTP~Gy--lpgLP~~Vl~~l~pd~ivllEaDp~~Il~RR 127 (189)
T COG2019 84 VDTHATIKTPAGY--LPGLPSWVLEELNPDVIVLLEADPEEILERR 127 (189)
T ss_pred EeccceecCCCcc--CCCCcHHHHHhcCCCEEEEEeCCHHHHHHHH
Confidence 3445566664 233443 455666788999999998774444
No 144
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.59 E-value=6.2e-05 Score=68.86 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=34.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF 224 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~ 224 (345)
|.|.|+|-||+||||+++.|+ .||+.++++.+++.+.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~ 37 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKEN 37 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhc
Confidence 579999999999999999999 9999999999887653
No 145
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.57 E-value=5.9e-05 Score=81.06 Aligned_cols=37 Identities=24% Similarity=0.260 Sum_probs=34.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH
Q 019172 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF 224 (345)
Q Consensus 188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~ 224 (345)
.|.|.|++|+||||+|+.||+.|||.|+|++.+....
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~ 39 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRAC 39 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence 6899999999999999999999999999999987653
No 146
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=97.57 E-value=0.00051 Score=71.22 Aligned_cols=43 Identities=26% Similarity=0.230 Sum_probs=36.9
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCc-eeeCcHHHHHHHcC
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYT-PLSTKELLETFAKQ 227 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~-fID~D~lIE~~~g~ 227 (345)
++..|+++|++|+||||++..||.++|+. ++.+|.+-+.+.++
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~ 297 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAM 297 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhh
Confidence 46788899999999999999999999998 77999976655543
No 147
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=97.55 E-value=0.00057 Score=60.73 Aligned_cols=30 Identities=30% Similarity=0.385 Sum_probs=26.3
Q ss_pred EEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (345)
Q Consensus 189 IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D 218 (345)
|++.|..||||||+++.|++.+|+.++.-+
T Consensus 2 I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep 31 (193)
T cd01673 2 IVVEGNIGAGKSTLAKELAEHLGYEVVPEP 31 (193)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcccccc
Confidence 789999999999999999999988766433
No 148
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.54 E-value=0.00052 Score=64.68 Aligned_cols=112 Identities=16% Similarity=0.141 Sum_probs=64.9
Q ss_pred eEEEEcCCCCChHHHHHHHHHhhCCc---eeeCcHHHHHHHcCchh-------hhhhccChHHHHHHHHHHHHH--Hh--
Q 019172 188 SIFLVGDSTEVNEKVALELAVGLGYT---PLSTKELLETFAKQTID-------SWMLAEGSDSVVNGECDVLES--LS-- 253 (345)
Q Consensus 188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~---fID~D~lIE~~~g~sI~-------ei~~~~Gee~FRelE~~vL~~--L~-- 253 (345)
-|-|.|.+||||||+++.|++.|+-. .|..|++.......+.. +--.+..++.|.+--..+++. +.
T Consensus 10 iIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~v~~P 89 (218)
T COG0572 10 IIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKPVDLP 89 (218)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCccccc
Confidence 45669999999999999999999966 88889987543332222 111233444444432222210 00
Q ss_pred ----------------cCCCEEEEcCCCCCcccCcHHHHHHHh--cCcEEEEEcChhhhchhhhhhhccccc
Q 019172 254 ----------------SHVRAVVATLGGQQGAAARADKWQHLY--AGFTVWLSQTEAMGKLLRVFVLSLHLR 307 (345)
Q Consensus 254 ----------------~~~~~VIAtGGG~~~avlr~~~r~~L~--~G~VV~Ld~s~a~~~~~Rv~v~~~h~R 307 (345)
...++||..|=- ++..+ .|+ ....|||+++.+.- ..|...++..+|
T Consensus 90 ~yd~~~~~r~~~~i~~~p~~VVIvEGi~----~l~d~---~lr~~~d~kIfvdtd~D~R-liRri~RD~~~r 153 (218)
T COG0572 90 VYDYKTHTREPETIKVEPNDVVIVEGIL----LLYDE---RLRDLMDLKIFVDTDADVR-LIRRIKRDVQER 153 (218)
T ss_pred ccchhcccccCCccccCCCcEEEEeccc----ccccH---HHHhhcCEEEEEeCCccHH-HHHHHHHHHHHh
Confidence 013467766653 34442 333 57899999997644 444444444433
No 149
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.52 E-value=0.00016 Score=66.09 Aligned_cols=29 Identities=14% Similarity=0.048 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCce
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTP 214 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~f 214 (345)
.++-|+|+|++|||||||++.|++. +..|
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~-~~~~ 40 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER-KLPF 40 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc-CCcc
Confidence 5678999999999999999999754 4444
No 150
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=97.51 E-value=0.00011 Score=81.05 Aligned_cols=43 Identities=26% Similarity=0.226 Sum_probs=38.3
Q ss_pred hcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH
Q 019172 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (345)
Q Consensus 183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~ 225 (345)
.|.++.|.|-|++||||||+|+.||++||+.|+|++.++...+
T Consensus 31 ~m~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~a 73 (863)
T PRK12269 31 PMGTVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFT 73 (863)
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHH
Confidence 4455789999999999999999999999999999999987643
No 151
>PLN02772 guanylate kinase
Probab=97.48 E-value=0.00084 Score=68.29 Aligned_cols=113 Identities=14% Similarity=0.183 Sum_probs=62.3
Q ss_pred ccceeeeeeecCcccccc-cceeEecCCce----EEEEeeccCCc------cceeeecccc---ccccCCCceeeecccc
Q 019172 87 SAEIELRLQLGSLEIQSS-KDIFVDADGTC----LTVRVNRSGSF------ITLIETNQLF---DKIKPTETIWYIDEDQ 152 (345)
Q Consensus 87 ~~Ele~rl~l~~~~~~~s-r~i~I~~~d~~----L~~~vls~~~~------~tlIe~k~l~---~~i~p~Etiw~~Dd~~ 152 (345)
+.++.++++|.|...... .-..+.|+|+. ..-.|++.++. -.+++..+++ .+.-|.+++|+..-++
T Consensus 30 av~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~~~~w~l~~~t 109 (398)
T PLN02772 30 SVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPDDSIWFLEVDT 109 (398)
T ss_pred eEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCccceEEEEcCC
Confidence 344556666666433332 45677777732 44466666541 1234334433 2344788999955544
Q ss_pred eeehcc--ccCCC-CCcchhHhhHHHHHHhhhhhcCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 153 LVINLK--KQDPE-LKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 153 ~~~~~k--~~~~~-~~~~~~~~~~~~l~a~~~~~l~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
--+.-| ..+.| ..|+.- . ..-..+.|+|+|++|+||+||.+.|.+.+
T Consensus 110 ~~~~~~~~~~~~eV~~~~~~----------~-~~~~~k~iVlsGPSGvGKsTL~~~L~~~~ 159 (398)
T PLN02772 110 PFVREQKKLLGTEVVAWSKG----------V-RGNAEKPIVISGPSGVGKGTLISMLMKEF 159 (398)
T ss_pred HHHHhhcccccceeeecccC----------C-CCCCCcEEEEECCCCCCHHHHHHHHhhhc
Confidence 333222 22222 122210 0 11135679999999999999999998765
No 152
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.47 E-value=0.00014 Score=57.49 Aligned_cols=28 Identities=32% Similarity=0.404 Sum_probs=25.9
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYT 213 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~ 213 (345)
+.+++|+|++|+||||+++.+|..++..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 5679999999999999999999999876
No 153
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.00063 Score=67.70 Aligned_cols=103 Identities=14% Similarity=0.171 Sum_probs=71.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHH--------------HHHHHcCc-----hhhhhhccChHHHHHHH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL--------------LETFAKQT-----IDSWMLAEGSDSVVNGE 245 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~l--------------IE~~~g~s-----I~ei~~~~Gee~FRelE 245 (345)
+.+.|+|+|..|+|||-|+-.||.+++-..|..|.+ .++.-|++ .-..-.+.-...|+..-
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~~a 85 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFEDDA 85 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHHHH
Confidence 567899999999999999999999999999999885 12222322 11111244456788888
Q ss_pred HHHHHHHhcCCCEEEEcCCCCCcccCcHHHHHHHh-c-----------------------CcEEEEEcChhhh
Q 019172 246 CDVLESLSSHVRAVVATLGGQQGAAARADKWQHLY-A-----------------------GFTVWLSQTEAMG 294 (345)
Q Consensus 246 ~~vL~~L~~~~~~VIAtGGG~~~avlr~~~r~~L~-~-----------------------G~VV~Ld~s~a~~ 294 (345)
..+++++.++++.=|..||+. .+.+.|- . -.++||+++.+.+
T Consensus 86 ~~aie~I~~rgk~PIv~GGs~-------~yi~al~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL 151 (348)
T KOG1384|consen 86 SRAIEEIHSRGKLPIVVGGSN-------SYLQALLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVL 151 (348)
T ss_pred HHHHHHHHhCCCCCEEeCCch-------hhHHHHhhcCCCcccCcccccCCCCCcccccceEEEEEecchHHH
Confidence 888999988776544445541 2344332 3 3589999998754
No 154
>PTZ00301 uridine kinase; Provisional
Probab=97.42 E-value=0.00056 Score=63.54 Aligned_cols=36 Identities=14% Similarity=0.075 Sum_probs=29.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhC-------CceeeCcHHHH
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLG-------YTPLSTKELLE 222 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg-------~~fID~D~lIE 222 (345)
.-|-|.|.+||||||+|+.|++.|. ...+..|.+..
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~ 46 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYR 46 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCcc
Confidence 4578899999999999999998872 34677788764
No 155
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.42 E-value=0.00015 Score=61.01 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=26.6
Q ss_pred eEEEEcCCCCChHHHHHHHHHhhCCceee
Q 019172 188 SIFLVGDSTEVNEKVALELAVGLGYTPLS 216 (345)
Q Consensus 188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID 216 (345)
+|+|+|++|+|||++++.+|+.++.+++.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~ 29 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIR 29 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEE
Confidence 58999999999999999999999988854
No 156
>PRK09087 hypothetical protein; Validated
Probab=97.41 E-value=0.00017 Score=67.34 Aligned_cols=139 Identities=11% Similarity=-0.001 Sum_probs=71.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcC------chhhhhhcc-ChHHHHHHHHHHHHHHhcCCC-E
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ------TIDSWMLAE-GSDSVVNGECDVLESLSSHVR-A 258 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~------sI~ei~~~~-Gee~FRelE~~vL~~L~~~~~-~ 258 (345)
..++|.|++|+|||++++.+++..+..|++.+++..+.... -++++-... .++.| ..++..+...+. .
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~iDDi~~~~~~~~~l----f~l~n~~~~~g~~i 120 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANAAAEGPVLIEDIDAGGFDETGL----FHLINSVRQAGTSL 120 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHhhhcCeEEEECCCCCCCCHHHH----HHHHHHHHhCCCeE
Confidence 45999999999999999999999999999997654433210 122221100 11111 223334433333 4
Q ss_pred EEEcCCCCCcc-cCcHHHHHHHhcCcEEEEEcChhhhchhhhhhhccccccccccceeeeeec-cCCCChHHHh
Q 019172 259 VVATLGGQQGA-AARADKWQHLYAGFTVWLSQTEAMGKLLRVFVLSLHLRSVTSYFVRLEFVS-SFSRTNEHIM 330 (345)
Q Consensus 259 VIAtGGG~~~a-vlr~~~r~~L~~G~VV~Ld~s~a~~~~~Rv~v~~~h~R~~~~~~~~le~i~-~~~r~~~~~~ 330 (345)
||++....... ...++-+..+..|.++-|..+...+ ......+....|.+.=--.-++|+. ...|+.++++
T Consensus 121 lits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~-~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~ 193 (226)
T PRK09087 121 LMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDAL-LSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQ 193 (226)
T ss_pred EEECCCChHHhccccccHHHHHhCCceeecCCCCHHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHH
Confidence 44433211000 1234455556678888888776533 1121222222232222223344443 3556666665
No 157
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.00067 Score=72.33 Aligned_cols=104 Identities=19% Similarity=0.190 Sum_probs=70.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc-----------------HHHHHHHcCc-----hhhh--hhccChHH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK-----------------ELLETFAKQT-----IDSW--MLAEGSDS 240 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D-----------------~lIE~~~g~s-----I~ei--~~~~Gee~ 240 (345)
.++.++|-|+||||||.+|+++|..||+||+..- ++++++.+.+ |++| +.-..+.+
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~a 301 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEA 301 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhH
Confidence 4678999999999999999999999999999753 2344444322 3333 33445668
Q ss_pred HHHHHHHHHHHHhcC----------CCEEEEcCCCCCcccCcHHHHH-HHh-c---CcEEEEEcChhh
Q 019172 241 VVNGECDVLESLSSH----------VRAVVATLGGQQGAAARADKWQ-HLY-A---GFTVWLSQTEAM 293 (345)
Q Consensus 241 FRelE~~vL~~L~~~----------~~~VIAtGGG~~~avlr~~~r~-~L~-~---G~VV~Ld~s~a~ 293 (345)
=|++|+++..+|+.. +.-||.-|+ --||+..+ .|+ . .+-|-|.+|.++
T Consensus 302 qreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgA-----TnRPDslDpaLRRaGRFdrEI~l~vP~e~ 364 (802)
T KOG0733|consen 302 QREMERRIVAQLLTSMDELSNEKTKGDPVLVIGA-----TNRPDSLDPALRRAGRFDREICLGVPSET 364 (802)
T ss_pred HHHHHHHHHHHHHHhhhcccccccCCCCeEEEec-----CCCCcccCHHHhccccccceeeecCCchH
Confidence 899999998887631 122443444 34555554 554 3 457888888663
No 158
>PRK06893 DNA replication initiation factor; Validated
Probab=97.35 E-value=0.0011 Score=61.49 Aligned_cols=107 Identities=11% Similarity=0.087 Sum_probs=57.3
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhh-----CCceeeCcHH-------HHHHHcCc---hhhhhhccChHHHHHHHHHHHH
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKEL-------LETFAKQT---IDSWMLAEGSDSVVNGECDVLE 250 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~L-----g~~fID~D~l-------IE~~~g~s---I~ei~~~~Gee~FRelE~~vL~ 250 (345)
...++|.|++|+|||++++.+|..+ +..|+++++. ++...+.. ++++....|.+.+.+.-..++.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n 118 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVLENLEQQDLVCLDDLQAVIGNEEWELAIFDLFN 118 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhhHHHHhhcccCCEEEEeChhhhcCChHHHHHHHHHHH
Confidence 4568999999999999999999875 6778888532 11111111 4444433344433332233444
Q ss_pred HHhcCCCEEEEcCCCCCcccC---cHHHHHHHhcCcEEEEEcChh
Q 019172 251 SLSSHVRAVVATLGGQQGAAA---RADKWQHLYAGFTVWLSQTEA 292 (345)
Q Consensus 251 ~L~~~~~~VIAtGGG~~~avl---r~~~r~~L~~G~VV~Ld~s~a 292 (345)
.+......+|.+++...-..+ -+.-+..+..|.++.|..+..
T Consensus 119 ~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~ 163 (229)
T PRK06893 119 RIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTD 163 (229)
T ss_pred HHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCH
Confidence 544434434333221000001 133333444688888887765
No 159
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=97.35 E-value=0.00074 Score=66.28 Aligned_cols=77 Identities=8% Similarity=0.097 Sum_probs=54.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHH--------------HHHHcC-----chhhhhhccChHHHHHHHHH
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL--------------ETFAKQ-----TIDSWMLAEGSDSVVNGECD 247 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lI--------------E~~~g~-----sI~ei~~~~Gee~FRelE~~ 247 (345)
+-|+|+|+.|||||.+|-.||+.. -..|.+|..- ++..+. .+-+..+...-..|.+.-.+
T Consensus 5 ~ii~I~GpTasGKS~LAl~LA~~~-~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~~a~~ 83 (300)
T PRK14729 5 KIVFIFGPTAVGKSNILFHFPKGK-AEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYKEALK 83 (300)
T ss_pred cEEEEECCCccCHHHHHHHHHHhC-CcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHHHHHH
Confidence 468999999999999999999995 5999999962 222221 12223344455567777778
Q ss_pred HHHHHhcCCCEEEEcCC
Q 019172 248 VLESLSSHVRAVVATLG 264 (345)
Q Consensus 248 vL~~L~~~~~~VIAtGG 264 (345)
+++++...+...|-+||
T Consensus 84 ~i~~i~~~gk~PilvGG 100 (300)
T PRK14729 84 IIKELRQQKKIPIFVGG 100 (300)
T ss_pred HHHHHHHCCCCEEEEeC
Confidence 88888777666555666
No 160
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=97.35 E-value=0.00052 Score=53.30 Aligned_cols=83 Identities=20% Similarity=0.393 Sum_probs=68.0
Q ss_pred EEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeecccceeehccccC
Q 019172 82 EFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQD 161 (345)
Q Consensus 82 ~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd~~~~~~~k~~~ 161 (345)
+|.|+.+++.+.+++++. ...++.|++...++.|.+.......-.++ -+||..|.|.++.|.+.+..+.+.++|..
T Consensus 1 dW~Qt~~~v~i~v~~~~~---~~~~v~v~~~~~~l~i~~~~~~~~~~~~~-~~L~~~I~~~~s~~~~~~~~vei~L~K~~ 76 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNV---DKEDVKVEFNEQSLSVSIILPGGSEYQLE-LDLFGPIDPEQSKVSVLPTKVEITLKKAE 76 (84)
T ss_pred CccccCCEEEEEEEECCC---CHHHCEEEEecCEEEEEEECCCCCeEEEe-cccccccCchhcEEEEeCeEEEEEEEcCC
Confidence 599999999999999972 36789999989899998876523334455 67999999999999999999999999977
Q ss_pred CCCCcchh
Q 019172 162 PELKWPDI 169 (345)
Q Consensus 162 ~~~~~~~~ 169 (345)
. ..||..
T Consensus 77 ~-~~W~~L 83 (84)
T cd06466 77 P-GSWPSL 83 (84)
T ss_pred C-CCCccC
Confidence 6 467753
No 161
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.34 E-value=0.00069 Score=61.49 Aligned_cols=26 Identities=4% Similarity=-0.078 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
+++-|+|+|++|+|||||++.|.+.+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 46779999999999999999998876
No 162
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=97.33 E-value=0.0019 Score=58.72 Aligned_cols=38 Identities=26% Similarity=0.271 Sum_probs=29.8
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCcee--eCcHHHHH
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPL--STKELLET 223 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fI--D~D~lIE~ 223 (345)
++-|+|-|.|-|||||||+.|.+.+.-+|+ ..|.+++.
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~ 40 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDM 40 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhh
Confidence 356999999999999999999999997755 55887774
No 163
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.32 E-value=0.00071 Score=64.21 Aligned_cols=24 Identities=33% Similarity=0.260 Sum_probs=22.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHhhC
Q 019172 188 SIFLVGDSTEVNEKVALELAVGLG 211 (345)
Q Consensus 188 ~IvLIG~~GSGKSTVAk~LA~~Lg 211 (345)
-|+|+|+|||||||.|+.||+.|.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 488999999999999999999986
No 164
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=97.31 E-value=0.002 Score=59.34 Aligned_cols=29 Identities=31% Similarity=0.314 Sum_probs=25.8
Q ss_pred EEEEcCCCCChHHHHHHHHHhhCCceeeC
Q 019172 189 IFLVGDSTEVNEKVALELAVGLGYTPLST 217 (345)
Q Consensus 189 IvLIG~~GSGKSTVAk~LA~~Lg~~fID~ 217 (345)
|+|-|..||||||+++.||+.|++.++.-
T Consensus 2 I~iEG~~GsGKSTl~~~L~~~l~~~~~~e 30 (219)
T cd02030 2 ITVDGNIASGKGKLAKELAEKLGMKYFPE 30 (219)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeeec
Confidence 78999999999999999999999866633
No 165
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.31 E-value=0.00044 Score=60.41 Aligned_cols=39 Identities=26% Similarity=0.308 Sum_probs=31.3
Q ss_pred HHHHhhhhhc-CCceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172 175 SLTAGSMQLL-KGTSIFLVGDSTEVNEKVALELAVGLGYT 213 (345)
Q Consensus 175 ~l~a~~~~~l-~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~ 213 (345)
.++..+.+.+ .+..|+|.|.+|+||||++|.+++.||+.
T Consensus 10 ~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 10 KFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred HHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 3444444555 46789999999999999999999999975
No 166
>PLN02348 phosphoribulokinase
Probab=97.31 E-value=0.00049 Score=69.93 Aligned_cols=35 Identities=20% Similarity=0.089 Sum_probs=30.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCC--------------------ceeeCcHHH
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGY--------------------TPLSTKELL 221 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~--------------------~fID~D~lI 221 (345)
--|-|.|.+||||||+++.|++.||- ..|.+|+++
T Consensus 50 ~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh 104 (395)
T PLN02348 50 VVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYH 104 (395)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEccccc
Confidence 45668999999999999999999973 479999986
No 167
>PRK13974 thymidylate kinase; Provisional
Probab=97.30 E-value=0.0011 Score=60.71 Aligned_cols=27 Identities=26% Similarity=0.075 Sum_probs=24.8
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLG 211 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg 211 (345)
.+.-|+|.|..||||||.++.|++.|.
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~ 28 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLP 28 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999985
No 168
>PHA00729 NTP-binding motif containing protein
Probab=97.24 E-value=0.00028 Score=66.73 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=24.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCC
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGY 212 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~ 212 (345)
.+|+|+|.+|+||||+|..||++++.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~ 43 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFW 43 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 58999999999999999999999863
No 169
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.23 E-value=0.0004 Score=68.95 Aligned_cols=33 Identities=9% Similarity=0.116 Sum_probs=30.4
Q ss_pred hcCCceEEEEcCCCCChHHHHHHHHHhhCCcee
Q 019172 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPL 215 (345)
Q Consensus 183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fI 215 (345)
...+++|+|.|++|+||||+++.||+.||++++
T Consensus 61 l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 61 FAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred HhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 345789999999999999999999999999997
No 170
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=97.23 E-value=0.0006 Score=67.03 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=35.0
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCc-eeeCcHHHHHH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYT-PLSTKELLETF 224 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~-fID~D~lIE~~ 224 (345)
.+..|+|.|++|+||||+|+.||++||++ ++.+|.+.+.+
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~ 131 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVM 131 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHH
Confidence 45789999999999999999999999998 78888876443
No 171
>PRK06620 hypothetical protein; Validated
Probab=97.22 E-value=0.0011 Score=61.39 Aligned_cols=100 Identities=6% Similarity=0.056 Sum_probs=56.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCc----hhhhhhccChHHHHHHH-HHHHHHHhcCCC-EEE
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQT----IDSWMLAEGSDSVVNGE-CDVLESLSSHVR-AVV 260 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~s----I~ei~~~~Gee~FRelE-~~vL~~L~~~~~-~VI 260 (345)
..++|.|++|+|||+++++++...+..++......++..+.. ++++ +.+.+.+ -.++..+...+. .||
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~~~~~~~~~~~~~d~lliDdi------~~~~~~~lf~l~N~~~e~g~~ili 118 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIKDIFFNEEILEKYNAFIIEDI------ENWQEPALLHIFNIINEKQKYLLL 118 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcchhhhchhHHhcCCEEEEecc------ccchHHHHHHHHHHHHhcCCEEEE
Confidence 569999999999999999999999887766444333322211 2222 1121111 123333333334 444
Q ss_pred EcCCCCCcccCcHHHHHHHhcCcEEEEEcChhh
Q 019172 261 ATLGGQQGAAARADKWQHLYAGFTVWLSQTEAM 293 (345)
Q Consensus 261 AtGGG~~~avlr~~~r~~L~~G~VV~Ld~s~a~ 293 (345)
++-.-.....+ ++-+..+..|.++-|..+...
T Consensus 119 ts~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~ 150 (214)
T PRK06620 119 TSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDE 150 (214)
T ss_pred EcCCCccccch-HHHHHHHhCCceEeeCCCCHH
Confidence 43322111123 555555567989999987653
No 172
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.21 E-value=0.0021 Score=60.05 Aligned_cols=108 Identities=12% Similarity=-0.004 Sum_probs=59.2
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHHHH---HHH-c---C---chhhhhhccChHHHHHHHHHHH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLE---TFA-K---Q---TIDSWMLAEGSDSVVNGECDVL 249 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~lIE---~~~-g---~---sI~ei~~~~Gee~FRelE~~vL 249 (345)
...+++|.|++|+|||++++.++..+. ..|+..|+... +.. + . -++++-.-.|.+.+.+.=..++
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~dlliiDdi~~~~~~~~~~~~lf~l~ 123 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVLEGMEQLSLVCIDNIECIAGDELWEMAIFDLY 123 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHHHHhhhCCEEEEeChhhhcCCHHHHHHHHHHH
Confidence 346899999999999999999998765 57888877421 111 1 0 1333322223222222223344
Q ss_pred HHHhcCCC-EEEEcCCC-CCcc-cCcHHHHHHHhcCcEEEEEcChh
Q 019172 250 ESLSSHVR-AVVATLGG-QQGA-AARADKWQHLYAGFTVWLSQTEA 292 (345)
Q Consensus 250 ~~L~~~~~-~VIAtGGG-~~~a-vlr~~~r~~L~~G~VV~Ld~s~a 292 (345)
..+...++ .+|.+|-- .... ...++-+..+..|.++-|..+..
T Consensus 124 n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~ 169 (235)
T PRK08084 124 NRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSD 169 (235)
T ss_pred HHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCH
Confidence 44433332 34444432 1000 02344555555789999987654
No 173
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.21 E-value=0.00054 Score=64.95 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=29.8
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceee
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLS 216 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID 216 (345)
.+.+|+|.|++|+|||++|+.||+.+|.+++-
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~ 51 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVML 51 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 57899999999999999999999999999883
No 174
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.20 E-value=0.00075 Score=60.30 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhh
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
++.|+|+|++|+||+|+++.|.+..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 4679999999999999999999886
No 175
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.18 E-value=0.00051 Score=55.19 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=29.4
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh---CCceeeCcH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL---GYTPLSTKE 219 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L---g~~fID~D~ 219 (345)
.+..++|+|++|+|||++++.++..+ +.+++..|.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~ 55 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNA 55 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEeh
Confidence 36789999999999999999999998 666665543
No 176
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.18 E-value=0.0006 Score=59.25 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=24.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHH
Q 019172 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETF 224 (345)
Q Consensus 188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~ 224 (345)
+|+|+|.+|+||||+++.||+. |++++ ++.....
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~~ 34 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVV--PEYAREI 34 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHHH
Confidence 4899999999999999999999 99998 5554443
No 177
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.17 E-value=0.0004 Score=70.72 Aligned_cols=36 Identities=22% Similarity=0.201 Sum_probs=32.4
Q ss_pred cCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE 219 (345)
Q Consensus 184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~ 219 (345)
+...+|+|+|++|+|||++|+.||+.++.+|+..|.
T Consensus 106 ~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~ 141 (412)
T PRK05342 106 LQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADA 141 (412)
T ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecch
Confidence 346789999999999999999999999999997664
No 178
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.0015 Score=64.46 Aligned_cols=79 Identities=16% Similarity=0.178 Sum_probs=54.7
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHH--------------HHHHHcCc-----hhhhhhccChHHHHHHHH
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL--------------LETFAKQT-----IDSWMLAEGSDSVVNGEC 246 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~l--------------IE~~~g~s-----I~ei~~~~Gee~FRelE~ 246 (345)
..-|+|+|+.++|||.+|-.||+++|.+.|.+|.. .+++.|.+ +-+..+...-..|.+.-.
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa~~f~~~a~ 82 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSAAEFQRDAL 82 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccccccHHHHHHHHH
Confidence 34589999999999999999999999999999996 23333321 233444455556666666
Q ss_pred HHHHHHhcCCCEEEEcCC
Q 019172 247 DVLESLSSHVRAVVATLG 264 (345)
Q Consensus 247 ~vL~~L~~~~~~VIAtGG 264 (345)
..+.++..++..-|-.||
T Consensus 83 ~~i~~i~~rgk~pIlVGG 100 (308)
T COG0324 83 AAIDDILARGKLPILVGG 100 (308)
T ss_pred HHHHHHHhCCCCcEEEcc
Confidence 667777766553333344
No 179
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.15 E-value=0.0018 Score=63.67 Aligned_cols=46 Identities=11% Similarity=0.228 Sum_probs=37.8
Q ss_pred hhHHHHHHhhhhhcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeC
Q 019172 171 ESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (345)
Q Consensus 171 ~~~~~l~a~~~~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~ 217 (345)
.+|+.+...+.+.+ .+.|+|+|.+|+||||+++.|++.+|.+++.-
T Consensus 148 ~~w~~i~~~~~~~~-~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E 193 (325)
T TIGR01526 148 QHWKHIPREVRPFF-VKTVAILGGESTGKSTLVNKLAAVFNTTSAWE 193 (325)
T ss_pred HHHHhCCHHHHhhc-CcEEEEECCCCCCHHHHHHHHHHhhCCCEEee
Confidence 56777766555544 56899999999999999999999999998654
No 180
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=97.15 E-value=0.0048 Score=57.24 Aligned_cols=103 Identities=18% Similarity=0.203 Sum_probs=66.0
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcC-------chhhhhhccChHHHHHHHHHHHHH-HhcC-
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQ-------TIDSWMLAEGSDSVVNGECDVLES-LSSH- 255 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~-------sI~ei~~~~Gee~FRelE~~vL~~-L~~~- 255 (345)
...-||++|.|||||-|....+++.+||.++.+++++.+.... -|.++++. |.-.=-+.=..+|++ +.+.
T Consensus 7 ~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~-G~iVP~ei~~~LL~~am~~~~ 85 (195)
T KOG3079|consen 7 KPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKN-GDLVPVEITLSLLEEAMRSSG 85 (195)
T ss_pred CCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHc-CCcCcHHHHHHHHHHHHHhcC
Confidence 3567899999999999999999999999999999998776543 13333322 321111111222222 2111
Q ss_pred --CCEEEEcCCCCCcccCcHHHHHHHh---c---CcEEEEEcChhhh
Q 019172 256 --VRAVVATLGGQQGAAARADKWQHLY---A---GFTVWLSQTEAMG 294 (345)
Q Consensus 256 --~~~VIAtGGG~~~avlr~~~r~~L~---~---G~VV~Ld~s~a~~ 294 (345)
...+| -|= +-..+++..+. . .+++|++.++++-
T Consensus 86 ~~~~fLI-DGy-----PR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~ 126 (195)
T KOG3079|consen 86 DSNGFLI-DGY-----PRNVDQLVEFERKIQGDPDFVLFFDCPEETM 126 (195)
T ss_pred CCCeEEe-cCC-----CCChHHHHHHHHHhcCCCCEEEEEeCCHHHH
Confidence 22444 232 67777777663 2 5799999998854
No 181
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.14 E-value=0.00058 Score=69.16 Aligned_cols=47 Identities=13% Similarity=0.136 Sum_probs=39.8
Q ss_pred hHhhHHHHHHhhhhhcCCceEEEEcCCCCChHHHHHHHHHhhCCceee
Q 019172 169 IVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLS 216 (345)
Q Consensus 169 ~~~~~~~l~a~~~~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID 216 (345)
....|+-|...+.+. ..++|+|+|.+|||||||++.||+.+|..++.
T Consensus 203 p~~~w~~i~~~vr~~-~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 203 PFRYWEYIPTEVRPF-FVRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred HHHHHHhcCHHHhhC-CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 557899988855554 57889999999999999999999999988654
No 182
>PF13173 AAA_14: AAA domain
Probab=97.13 E-value=0.00055 Score=57.59 Aligned_cols=37 Identities=16% Similarity=0.082 Sum_probs=32.6
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhC----CceeeCcHHHH
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLG----YTPLSTKELLE 222 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg----~~fID~D~lIE 222 (345)
++.++|.|++|+||||+++.+++.+. +-+++.|+.-.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~ 42 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRD 42 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHH
Confidence 46789999999999999999999876 88999988654
No 183
>PRK15453 phosphoribulokinase; Provisional
Probab=97.06 E-value=0.00048 Score=67.37 Aligned_cols=38 Identities=13% Similarity=0.049 Sum_probs=33.2
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHHHH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLE 222 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~lIE 222 (345)
+...|.|+|.+||||||+++.|++.|+ ..+++.|.++.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 356799999999999999999999885 67899999874
No 184
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=97.00 E-value=0.0044 Score=58.39 Aligned_cols=36 Identities=14% Similarity=0.187 Sum_probs=32.2
Q ss_pred EEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH
Q 019172 189 IFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA 225 (345)
Q Consensus 189 IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~ 225 (345)
+-|+|-.|+|||||++.+- ++|++.||+|.+-.+..
T Consensus 4 VGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv 39 (225)
T KOG3220|consen 4 VGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVV 39 (225)
T ss_pred EEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHh
Confidence 5689999999999999996 99999999999977665
No 185
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.00 E-value=0.0014 Score=60.76 Aligned_cols=27 Identities=26% Similarity=0.152 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLG 211 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg 211 (345)
+|+-|+|+||+|+|||||.++|=+..+
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~ 29 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDK 29 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcC
Confidence 577899999999999999999977664
No 186
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.97 E-value=0.0019 Score=66.47 Aligned_cols=35 Identities=20% Similarity=0.149 Sum_probs=31.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE 219 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~ 219 (345)
.+++++|.|+||+|||++++.+|..++++|+..+.
T Consensus 87 ~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~ 121 (495)
T TIGR01241 87 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 121 (495)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccH
Confidence 35689999999999999999999999999988763
No 187
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=96.95 E-value=0.0021 Score=54.30 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=26.6
Q ss_pred eEEEEcCCCCChHHHHHHHHHhh---CCc--eeeCcH
Q 019172 188 SIFLVGDSTEVNEKVALELAVGL---GYT--PLSTKE 219 (345)
Q Consensus 188 ~IvLIG~~GSGKSTVAk~LA~~L---g~~--fID~D~ 219 (345)
+|++.|.+|+||||++..||+.+ |.+ .+|+|.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 38899999999999999998877 544 488875
No 188
>PHA02244 ATPase-like protein
Probab=96.94 E-value=0.0013 Score=66.66 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=33.6
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELL 221 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lI 221 (345)
.+.+|+|+|++|+|||++++.+|..+|++|+..+.+.
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~ 154 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIM 154 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecCh
Confidence 4778999999999999999999999999999887654
No 189
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.00084 Score=67.11 Aligned_cols=36 Identities=22% Similarity=0.194 Sum_probs=33.0
Q ss_pred cCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE 219 (345)
Q Consensus 184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~ 219 (345)
|.+.||.|+||.|||||-+|+-||+.|+.||-=+|.
T Consensus 95 L~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADA 130 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADA 130 (408)
T ss_pred eeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccc
Confidence 467899999999999999999999999999987775
No 190
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=96.90 E-value=0.0082 Score=56.62 Aligned_cols=99 Identities=12% Similarity=0.160 Sum_probs=61.3
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCC-----ceeeCcHHHHHHHcC-chhhhhhccChHHHHHHHH---HHH----HHH
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGY-----TPLSTKELLETFAKQ-TIDSWMLAEGSDSVVNGEC---DVL----ESL 252 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~-----~fID~D~lIE~~~g~-sI~ei~~~~Gee~FRelE~---~vL----~~L 252 (345)
+-.|++||.|+.|||++|+.|++.|.| ..+...++..+..+. .-.++|....+++.+..|. .+| .-|
T Consensus 12 kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a~~~l~dl~~~l 91 (222)
T PF01591_consen 12 KLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIAKEALEDLIEWL 91 (222)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 456888999999999999999999875 566777888887765 3345666666666555443 233 334
Q ss_pred hcC-CCEEEEcCCCCCcccCcHHHHHHHh-----cC-cEEEEEc
Q 019172 253 SSH-VRAVVATLGGQQGAAARADKWQHLY-----AG-FTVWLSQ 289 (345)
Q Consensus 253 ~~~-~~~VIAtGGG~~~avlr~~~r~~L~-----~G-~VV~Ld~ 289 (345)
... .++-|-.+-. .+.+-|+.|. .| .++||..
T Consensus 92 ~~~~G~VAI~DATN-----~T~~RR~~l~~~~~~~~~~vlFIEs 130 (222)
T PF01591_consen 92 QEEGGQVAIFDATN-----STRERRKMLVERFKEHGIKVLFIES 130 (222)
T ss_dssp HTS--SEEEEES--------SHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred hcCCCeEEEEeCCC-----CCHHHHHHHHHHHHHcCCcEEEEEE
Confidence 422 3344433332 4555666553 24 6888876
No 191
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.89 E-value=0.0056 Score=55.93 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=33.8
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh-----CCceeeCcHHHHH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELLET 223 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L-----g~~fID~D~lIE~ 223 (345)
....++|.|.+|+|||++++.++..+ .+.|+++++..+.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~ 84 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA 84 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH
Confidence 35689999999999999999999987 7889998887554
No 192
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.89 E-value=0.001 Score=68.00 Aligned_cols=34 Identities=21% Similarity=0.163 Sum_probs=30.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D 218 (345)
.+.+|+|+|++|+|||++|+.||+.++.+|+-.|
T Consensus 115 ~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~d 148 (413)
T TIGR00382 115 SKSNILLIGPTGSGKTLLAQTLARILNVPFAIAD 148 (413)
T ss_pred CCceEEEECCCCcCHHHHHHHHHHhcCCCeEEec
Confidence 3568999999999999999999999999997555
No 193
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=96.88 E-value=0.0033 Score=57.28 Aligned_cols=103 Identities=16% Similarity=0.177 Sum_probs=59.8
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEE
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAV 259 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~V 259 (345)
+|+.|+++|.+||||||+|-.|.+.|- .-.+|+|.+..-. +..+. +-+++..+-.|+.- ++ .+|-. +.+|
T Consensus 30 kGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGL-N~DL~-F~a~dR~ENIRRig-eV-aKLFA-Dag~ 104 (207)
T KOG0635|consen 30 KGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGL-NKDLG-FKAEDRNENIRRIG-EV-AKLFA-DAGV 104 (207)
T ss_pred CCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccccccc-ccccC-cchhhhhhhHHHHH-HH-HHHHh-ccce
Confidence 689999999999999999999999885 3457888864311 11111 11233334444432 12 22322 2244
Q ss_pred EEcCCCCCccc---CcHHHHHHHhcC--cEEEEEcChhhh
Q 019172 260 VATLGGQQGAA---ARADKWQHLYAG--FTVWLSQTEAMG 294 (345)
Q Consensus 260 IAtGGG~~~av---lr~~~r~~L~~G--~VV~Ld~s~a~~ 294 (345)
|+--.=+ .+ .|...|+++..| +-||.++|...-
T Consensus 105 iciaSlI--SPYR~dRdacRel~~~~~FiEvfmdvpl~vc 142 (207)
T KOG0635|consen 105 ICIASLI--SPYRKDRDACRELLPEGDFIEVFMDVPLEVC 142 (207)
T ss_pred eeeehhc--CchhccHHHHHHhccCCCeEEEEecCcHHHh
Confidence 4322211 12 345566676654 367899998754
No 194
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.88 E-value=0.0032 Score=56.83 Aligned_cols=37 Identities=16% Similarity=0.131 Sum_probs=30.7
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHHH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELL 221 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~lI 221 (345)
.+.+|+|+|++|+|||++++.++..+. +.|++++++.
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 467899999999999999999998763 5577777664
No 195
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.88 E-value=0.0054 Score=53.67 Aligned_cols=33 Identities=27% Similarity=0.265 Sum_probs=27.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHhh---C--CceeeCcHH
Q 019172 188 SIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKEL 220 (345)
Q Consensus 188 ~IvLIG~~GSGKSTVAk~LA~~L---g--~~fID~D~l 220 (345)
.|+++|++|+||||+++.+|..+ | .-++|+|.+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 47889999999999999998875 4 457899954
No 196
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.87 E-value=0.0013 Score=61.06 Aligned_cols=33 Identities=21% Similarity=0.159 Sum_probs=28.4
Q ss_pred EEEEcCCCCChHHHHHHHHHhhC-------CceeeCcHHH
Q 019172 189 IFLVGDSTEVNEKVALELAVGLG-------YTPLSTKELL 221 (345)
Q Consensus 189 IvLIG~~GSGKSTVAk~LA~~Lg-------~~fID~D~lI 221 (345)
|-|.|.+||||||+++.|+..|. ..+|.+|.+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 56899999999999999999984 4578889875
No 197
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.86 E-value=0.001 Score=63.27 Aligned_cols=31 Identities=19% Similarity=0.125 Sum_probs=25.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeC
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~ 217 (345)
.+++|.||||.||||+|..+|+.+|..|.-+
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~ 81 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGVNFKIT 81 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT--EEEE
T ss_pred ceEEEECCCccchhHHHHHHHhccCCCeEec
Confidence 5799999999999999999999999888544
No 198
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.85 E-value=0.00091 Score=60.03 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=28.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhC--CceeeCcH
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLG--YTPLSTKE 219 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg--~~fID~D~ 219 (345)
+.|+|+|.+||||||+|..|+..++ +.|+.+..
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 5799999999999999999999988 45666643
No 199
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.82 E-value=0.0011 Score=62.38 Aligned_cols=40 Identities=25% Similarity=0.323 Sum_probs=33.3
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhC----CceeeCcHHHHHHH
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLG----YTPLSTKELLETFA 225 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg----~~fID~D~lIE~~~ 225 (345)
.+.|+|-||-|+||||+|++||+.|| +..++-|.+++...
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~E~vednp~L~~FY 47 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVFYELVEDNPFLDLFY 47 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCceeeecccCChHHHHHH
Confidence 46799999999999999999999999 44566677766655
No 200
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.82 E-value=0.0017 Score=56.15 Aligned_cols=29 Identities=31% Similarity=0.365 Sum_probs=24.3
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYT 213 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~ 213 (345)
.+..|+|.|..||||||+.|.+++.||..
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 45678899999999999999999999865
No 201
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.80 E-value=0.0012 Score=68.75 Aligned_cols=35 Identities=17% Similarity=0.087 Sum_probs=32.0
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE 219 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~ 219 (345)
.++.|+|.|++|+|||.+|+.+|..+|++++..|-
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~ 292 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDV 292 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEh
Confidence 46789999999999999999999999999988763
No 202
>PLN02924 thymidylate kinase
Probab=96.76 E-value=0.0049 Score=57.58 Aligned_cols=30 Identities=20% Similarity=0.083 Sum_probs=26.5
Q ss_pred cCCceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYT 213 (345)
Q Consensus 184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~ 213 (345)
..++-|+|-|..||||||+++.|++.|...
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~ 43 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGL 43 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 356789999999999999999999999644
No 203
>CHL00181 cbbX CbbX; Provisional
Probab=96.71 E-value=0.0015 Score=63.21 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=31.1
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhC---------CceeeCcHHHHHHHc
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLG---------YTPLSTKELLETFAK 226 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg---------~~fID~D~lIE~~~g 226 (345)
.+.+|+|.|+||+||||+|+.+|+.+. +-.++.++++.+..|
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g 108 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIG 108 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhc
Confidence 356799999999999999999999762 234455566554443
No 204
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.69 E-value=0.0016 Score=65.34 Aligned_cols=34 Identities=15% Similarity=0.068 Sum_probs=30.6
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D 218 (345)
.++.|+|.|++|+|||++|+.+|..++.+|+..+
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~ 197 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV 197 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCCCEEEee
Confidence 3578999999999999999999999999987664
No 205
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.69 E-value=0.0016 Score=62.76 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=30.2
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhC---------CceeeCcHHHHHHHc
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLG---------YTPLSTKELLETFAK 226 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg---------~~fID~D~lIE~~~g 226 (345)
+.+++|.|++|+||||+|+.+|+.+. +.+++.++++.+..|
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g 107 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIG 107 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcc
Confidence 45899999999999999999888773 334555666544333
No 206
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.68 E-value=0.0017 Score=68.54 Aligned_cols=74 Identities=24% Similarity=0.261 Sum_probs=53.0
Q ss_pred eeccccccccCCCceeeecccceeehccccCCCCCcchhHhhHHHHHHhhhhhcCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 131 ETNQLFDKIKPTETIWYIDEDQLVINLKKQDPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 131 e~k~l~~~i~p~Etiw~~Dd~~~~~~~k~~~~~~~~~~~~~~~~~l~a~~~~~l~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
+....|+|-+|.. -||.+++ .||-+ -++.|-.--+.....++..-.+|+|++||||||.-+.||+.|
T Consensus 68 ~~elW~eKy~P~t----~eeLAVH--kkKI~-------eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 68 EFELWVEKYKPRT----LEELAVH--KKKIS-------EVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred ccchhHHhcCccc----HHHHhhh--HHhHH-------HHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 3456779999984 7777755 33311 124453322445567777888899999999999999999999
Q ss_pred CCceeeC
Q 019172 211 GYTPLST 217 (345)
Q Consensus 211 g~~fID~ 217 (345)
|+.+++=
T Consensus 135 g~~~~Ew 141 (634)
T KOG1970|consen 135 GYQLIEW 141 (634)
T ss_pred Cceeeee
Confidence 9988763
No 207
>CHL00176 ftsH cell division protein; Validated
Probab=96.67 E-value=0.0093 Score=64.04 Aligned_cols=33 Identities=18% Similarity=0.122 Sum_probs=30.5
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D 218 (345)
+++|+|.|++|+|||++|+.+|..++.+|+..+
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is 248 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSIS 248 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeeecc
Confidence 568999999999999999999999999999764
No 208
>PRK10646 ADP-binding protein; Provisional
Probab=96.64 E-value=0.0037 Score=55.97 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=31.1
Q ss_pred HHHHHhhhhhcC-CceEEEEcCCCCChHHHHHHHHHhhCC
Q 019172 174 ESLTAGSMQLLK-GTSIFLVGDSTEVNEKVALELAVGLGY 212 (345)
Q Consensus 174 ~~l~a~~~~~l~-~~~IvLIG~~GSGKSTVAk~LA~~Lg~ 212 (345)
+.++..+.+.++ +..|+|.|..||||||+.|.+++.||.
T Consensus 15 ~~l~~~la~~l~~g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 15 LDLGARVAKACDGATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred HHHHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 344444555665 457889999999999999999999997
No 209
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.64 E-value=0.0013 Score=64.05 Aligned_cols=34 Identities=12% Similarity=0.056 Sum_probs=30.3
Q ss_pred EEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHHHH
Q 019172 189 IFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLE 222 (345)
Q Consensus 189 IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~lIE 222 (345)
|.|.|.+||||||+++.|++.|+ ..+|+.|++..
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 78899999999999999998775 57899999865
No 210
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.64 E-value=0.0019 Score=58.06 Aligned_cols=26 Identities=27% Similarity=0.170 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCC
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGY 212 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~ 212 (345)
.+++|+|++|+|||.+++.||+.|..
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFV 29 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47899999999999999999999995
No 211
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.64 E-value=0.0097 Score=58.65 Aligned_cols=36 Identities=17% Similarity=0.034 Sum_probs=29.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKEL 220 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~l 220 (345)
++..|.|+|++|+||||++..||..+. .-++++|.+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence 356789999999999999999998873 456788864
No 212
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0032 Score=67.48 Aligned_cols=44 Identities=23% Similarity=0.259 Sum_probs=37.1
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeC--cHHHHHHHcCc
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAKQT 228 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~--D~lIE~~~g~s 228 (345)
.++.|++-|+||||||++||.+|..-++.|+.. -+++-++.|.+
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeS 512 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGES 512 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCch
Confidence 367899999999999999999999999999877 56666666644
No 213
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=96.62 E-value=0.0056 Score=47.01 Aligned_cols=76 Identities=20% Similarity=0.309 Sum_probs=60.3
Q ss_pred EeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeecccceeehccccCC
Q 019172 83 FSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQDP 162 (345)
Q Consensus 83 ~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd~~~~~~~k~~~~ 162 (345)
|.|+..++.+++.+|| + +..++.|+..+..+.|.. .. -.++ .+|+..|.|.++.|.+++..+.+.+.|...
T Consensus 1 W~Qt~~~v~i~i~~p~--v-~~~~v~v~~~~~~l~i~~---~~--~~~~-~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~ 71 (78)
T cd06469 1 WSQTDEDVKISVPLKG--V-KTSKVDIFCSDLYLKVNF---PP--YLFE-LDLAAPIDDEKSSAKIGNGVLVFTLVKKEP 71 (78)
T ss_pred CcccCCEEEEEEEeCC--C-ccccceEEEecCEEEEcC---CC--EEEE-EeCcccccccccEEEEeCCEEEEEEEeCCC
Confidence 7899999999999998 3 356788888887777755 11 2233 699999999999999999999999998765
Q ss_pred CCCcch
Q 019172 163 ELKWPD 168 (345)
Q Consensus 163 ~~~~~~ 168 (345)
..||.
T Consensus 72 -~~W~~ 76 (78)
T cd06469 72 -GIWEA 76 (78)
T ss_pred -Ccccc
Confidence 35654
No 214
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=96.59 E-value=0.006 Score=48.05 Aligned_cols=83 Identities=16% Similarity=0.362 Sum_probs=65.9
Q ss_pred EEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeecccceeehccccC
Q 019172 82 EFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKKQD 161 (345)
Q Consensus 82 ~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd~~~~~~~k~~~ 161 (345)
+|.|+..+|.+.|.+++.+ ..++.|++.+.++.|+++......-.++ -+||..|.|.++.|-+=+..+.+.++|.+
T Consensus 1 dW~Q~~~~V~iti~~k~~~---~~~~~v~~~~~~l~~~~~~~~~~~y~~~-~~L~~~I~p~~s~~~v~~~kiei~L~K~~ 76 (84)
T cd06489 1 DWYQTESQVVITILIKNVK---PEDVSVEFEKRELSATVKLPSGNDYSLK-LHLLHPIVPEQSSYKILSTKIEIKLKKTE 76 (84)
T ss_pred CccccCCEEEEEEEECCCC---HHHCEEEEeCCEEEEEEECCCCCcEEEe-eecCceecchhcEEEEeCcEEEEEEEcCC
Confidence 5899999999999988722 5789999999999999876543334455 58999999999999887888999999876
Q ss_pred CCCCcchh
Q 019172 162 PELKWPDI 169 (345)
Q Consensus 162 ~~~~~~~~ 169 (345)
. ..||..
T Consensus 77 ~-~~W~~L 83 (84)
T cd06489 77 A-IRWSKL 83 (84)
T ss_pred C-CCCccC
Confidence 4 467653
No 215
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.58 E-value=0.014 Score=54.27 Aligned_cols=143 Identities=17% Similarity=0.181 Sum_probs=73.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhC-------CceeeCcHHHHHHHc----Cc---------------hhhhhhccChHH
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLG-------YTPLSTKELLETFAK----QT---------------IDSWMLAEGSDS 240 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg-------~~fID~D~lIE~~~g----~s---------------I~ei~~~~Gee~ 240 (345)
..++|.|++|+|||.+.+.++..+. ..|++++++...... .. ++++-.-.|.+.
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~~ 114 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGKQR 114 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCchH
Confidence 3699999999999999999976542 458888887544321 11 333323334443
Q ss_pred HHHHHHHHHHHHhcCCC-EEEEcCCCCCcc-cCcHHHHHHHhcCcEEEEEcChhhhchhhhhhhccccccccccceeeee
Q 019172 241 VVNGECDVLESLSSHVR-AVVATLGGQQGA-AARADKWQHLYAGFTVWLSQTEAMGKLLRVFVLSLHLRSVTSYFVRLEF 318 (345)
Q Consensus 241 FRelE~~vL~~L~~~~~-~VIAtGGG~~~a-vlr~~~r~~L~~G~VV~Ld~s~a~~~~~Rv~v~~~h~R~~~~~~~~le~ 318 (345)
..+.--.++..+...+. +||++..-.... .+.++-+..|..|.++-|..|...+ .-+...+..++|.+.=--..++|
T Consensus 115 ~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~-r~~il~~~a~~~~~~l~~~v~~~ 193 (219)
T PF00308_consen 115 TQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDED-RRRILQKKAKERGIELPEEVIEY 193 (219)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHH-HHHHHHHHHHHTT--S-HHHHHH
T ss_pred HHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHH-HHHHHHHHHHHhCCCCcHHHHHH
Confidence 44433455666655554 555544422111 1455666677789999998775522 22222223344433322233344
Q ss_pred e-ccCCCChHHHh
Q 019172 319 V-SSFSRTNEHIM 330 (345)
Q Consensus 319 i-~~~~r~~~~~~ 330 (345)
+ ..+.|+..+++
T Consensus 194 l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 194 LARRFRRDVRELE 206 (219)
T ss_dssp HHHHTTSSHHHHH
T ss_pred HHHhhcCCHHHHH
Confidence 4 23455655554
No 216
>PRK04195 replication factor C large subunit; Provisional
Probab=96.58 E-value=0.0038 Score=64.24 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=30.8
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D 218 (345)
...++|.|++|+||||+++.||+.+|+.+++.+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ieln 71 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELN 71 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEc
Confidence 578999999999999999999999999999875
No 217
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.58 E-value=0.0025 Score=62.95 Aligned_cols=34 Identities=15% Similarity=0.068 Sum_probs=30.8
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D 218 (345)
.++.++|.|++|+|||++++.+|..++.+|+...
T Consensus 155 ~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~ 188 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV 188 (364)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhCCCCEEecc
Confidence 3577999999999999999999999999988765
No 218
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.0064 Score=61.39 Aligned_cols=47 Identities=15% Similarity=0.243 Sum_probs=38.0
Q ss_pred hhHHHHH--HhhhhhcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeC
Q 019172 171 ESWESLT--AGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (345)
Q Consensus 171 ~~~~~l~--a~~~~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~ 217 (345)
+.|.+.+ ........++||+.||+.|.|||.+||.||+..|.||+-.
T Consensus 33 NR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKV 81 (444)
T COG1220 33 NRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKV 81 (444)
T ss_pred HHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 5676544 2244455689999999999999999999999999999843
No 219
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.57 E-value=0.0018 Score=60.95 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
...+++|.|++|+||||+|+.+|+.+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999875
No 220
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.56 E-value=0.0066 Score=56.26 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=23.3
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhC
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLG 211 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg 211 (345)
...++|+|++|+||||+++.++..+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 34688999999999999999999886
No 221
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.51 E-value=0.0059 Score=62.43 Aligned_cols=34 Identities=15% Similarity=0.022 Sum_probs=31.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHH
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL 220 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~l 220 (345)
.+.+|-||||+||||||+.+|..+++.|......
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv 82 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV 82 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc
Confidence 5788999999999999999999999999988765
No 222
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.50 E-value=0.01 Score=56.47 Aligned_cols=31 Identities=16% Similarity=0.082 Sum_probs=27.1
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCceee
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLS 216 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID 216 (345)
..+++|.|++|+|||++++.+|..++..+.-
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~ 60 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGVNLKI 60 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 4579999999999999999999999977543
No 223
>PRK07429 phosphoribulokinase; Provisional
Probab=96.50 E-value=0.0021 Score=63.60 Aligned_cols=36 Identities=25% Similarity=0.137 Sum_probs=31.6
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhC---CceeeCcHHH
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLG---YTPLSTKELL 221 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg---~~fID~D~lI 221 (345)
...|.|+|.+||||||+++.|+..|+ ...+.+|+++
T Consensus 8 ~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~ 46 (327)
T PRK07429 8 PVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH 46 (327)
T ss_pred CEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence 34678899999999999999999998 5678999975
No 224
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.48 E-value=0.0039 Score=65.44 Aligned_cols=31 Identities=23% Similarity=0.213 Sum_probs=27.8
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCceee
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLS 216 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID 216 (345)
.+-++|.||+||||||..+.||+.||+.+++
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 4567789999999999999999999988776
No 225
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.48 E-value=0.0053 Score=66.33 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=30.8
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D 218 (345)
.++.|+|.|++|+|||++|+.+|..++.+|+..+
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~ 519 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATESGANFIAVR 519 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe
Confidence 3567999999999999999999999999998765
No 226
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.48 E-value=0.0033 Score=55.88 Aligned_cols=27 Identities=30% Similarity=0.282 Sum_probs=24.3
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLG 211 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg 211 (345)
+++.|+|+|++|+||+||++.|.+.+.
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 357899999999999999999998875
No 227
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=96.46 E-value=0.0024 Score=61.51 Aligned_cols=33 Identities=18% Similarity=0.046 Sum_probs=29.2
Q ss_pred EEEEcCCCCChHHHHHHHHHhh---CCceeeCcHHH
Q 019172 189 IFLVGDSTEVNEKVALELAVGL---GYTPLSTKELL 221 (345)
Q Consensus 189 IvLIG~~GSGKSTVAk~LA~~L---g~~fID~D~lI 221 (345)
|.|+|.+||||||+++.|+..+ +...+.+|++.
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~ 37 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH 37 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence 6789999999999999999888 46689999875
No 228
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.45 E-value=0.0084 Score=60.45 Aligned_cols=35 Identities=14% Similarity=0.014 Sum_probs=30.9
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE 219 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~ 219 (345)
...+++|.|++|+||||+|+.+|+.++..|+..+.
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a 69 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSA 69 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 34589999999999999999999999999987654
No 229
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.45 E-value=0.0084 Score=57.73 Aligned_cols=35 Identities=26% Similarity=0.314 Sum_probs=29.5
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhh----C---CceeeCcHH
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGL----G---YTPLSTKEL 220 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~L----g---~~fID~D~l 220 (345)
+..|.|+|+.|+||||++..||..+ | ..+|++|.+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 5678999999999999999998866 3 458999985
No 230
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.42 E-value=0.0024 Score=55.99 Aligned_cols=41 Identities=20% Similarity=0.114 Sum_probs=27.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHhhCCceeeC----cHHHHHHHcCc
Q 019172 188 SIFLVGDSTEVNEKVALELAVGLGYTPLST----KELLETFAKQT 228 (345)
Q Consensus 188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~----D~lIE~~~g~s 228 (345)
+++|.|.+|.||||+++.||+.+|..|.+. |-+.....|..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~ 45 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFP 45 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEE
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeee
Confidence 478999999999999999999999999865 44455556643
No 231
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=96.41 E-value=0.023 Score=56.00 Aligned_cols=103 Identities=16% Similarity=0.092 Sum_probs=67.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhh--hccChHHHHHHHHHHHHHHhcCCCEEEEcCCC
Q 019172 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWM--LAEGSDSVVNGECDVLESLSSHVRAVVATLGG 265 (345)
Q Consensus 188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~--~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG 265 (345)
-+++.|+.|+|||.|.+.|++. |+..||+...-+ ..|-....+- ...-...|+..-...|.++.....+||-+-+.
T Consensus 129 ~~vl~g~tg~gKt~Ll~~L~~~-~~~VvDlr~~a~-hrGs~fG~~~~~~qpsq~~fe~~L~~~l~~~~~~~~i~~e~es~ 206 (311)
T TIGR03167 129 LIVLGGMTGSGKTELLHALANA-GAQVLDLEGLAN-HRGSSFGALGLGPQPSQKRFENALAEALRRLDPGRPIFVEDESR 206 (311)
T ss_pred eeccCCCCCcCHHHHHHHHhcC-CCeEEECCchHH-hcCcccCCCCCCCCCchHHHHHHHHHHHHhCCCCceEEEEeCch
Confidence 3568899999999999999888 899999999544 3342222221 12234667554444444443333456644443
Q ss_pred CCccc-CcHHHHHHHhcCcEEEEEcChh
Q 019172 266 QQGAA-ARADKWQHLYAGFTVWLSQTEA 292 (345)
Q Consensus 266 ~~~av-lr~~~r~~L~~G~VV~Ld~s~a 292 (345)
..|.+ +-+.-|+.|+.+.+|+|+.|.+
T Consensus 207 ~ig~~~~p~~l~~~m~~~~~i~i~~~~e 234 (311)
T TIGR03167 207 RIGRVALPDALFEAMRAAPLVELEASLE 234 (311)
T ss_pred hhccccCCHHHHHHHhhCCEEEEECCHH
Confidence 22333 5555888999999999999987
No 232
>PRK05439 pantothenate kinase; Provisional
Probab=96.41 E-value=0.0052 Score=60.67 Aligned_cols=35 Identities=20% Similarity=0.094 Sum_probs=30.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhC-------CceeeCcHHH
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLG-------YTPLSTKELL 221 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg-------~~fID~D~lI 221 (345)
..|.|.|.+||||||+++.|++.|+ ...|.+|+++
T Consensus 87 ~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 87 FIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 3577899999999999999999875 4578999986
No 233
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.40 E-value=0.021 Score=43.28 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=26.1
Q ss_pred EEEEcCCCCChHHHHHHHHHhh---CCceeeCc
Q 019172 189 IFLVGDSTEVNEKVALELAVGL---GYTPLSTK 218 (345)
Q Consensus 189 IvLIG~~GSGKSTVAk~LA~~L---g~~fID~D 218 (345)
|++.|..|+||||++..||..| |+..+=.|
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 6788999999999999999998 67776666
No 234
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.40 E-value=0.0034 Score=63.69 Aligned_cols=34 Identities=15% Similarity=0.051 Sum_probs=31.1
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D 218 (345)
.++.|+|.|++|+|||++++.+|..++.+|+...
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~ 211 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVV 211 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe
Confidence 4688999999999999999999999999998764
No 235
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.38 E-value=0.0048 Score=60.12 Aligned_cols=36 Identities=28% Similarity=0.310 Sum_probs=32.6
Q ss_pred hhcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeC
Q 019172 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (345)
Q Consensus 182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~ 217 (345)
..+.+.+++|.|++|.|||++++.+|+.+|++|+..
T Consensus 39 a~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i 74 (329)
T COG0714 39 ALLAGGHVLLEGPPGVGKTLLARALARALGLPFVRI 74 (329)
T ss_pred HHHcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEE
Confidence 466789999999999999999999999999888764
No 236
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.37 E-value=0.013 Score=62.88 Aligned_cols=105 Identities=12% Similarity=0.133 Sum_probs=59.8
Q ss_pred eEEEEcCCCCChHHHHHHHHHhh-------CCceeeCcHHHHHHHc----Cc---------------hhhhhhccChHHH
Q 019172 188 SIFLVGDSTEVNEKVALELAVGL-------GYTPLSTKELLETFAK----QT---------------IDSWMLAEGSDSV 241 (345)
Q Consensus 188 ~IvLIG~~GSGKSTVAk~LA~~L-------g~~fID~D~lIE~~~g----~s---------------I~ei~~~~Gee~F 241 (345)
.++|.|.+|+|||.|+..++..+ ...|+.+++++.+... .. |+++....|.+..
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~t 395 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKEST 395 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHHH
Confidence 39999999999999999999875 3478888887655421 01 2333222333333
Q ss_pred HHHHHHHHHHHhcC-CCEEEEcCCCCCcc-cCcHHHHHHHhcCcEEEEEcChh
Q 019172 242 VNGECDVLESLSSH-VRAVVATLGGQQGA-AARADKWQHLYAGFTVWLSQTEA 292 (345)
Q Consensus 242 RelE~~vL~~L~~~-~~~VIAtGGG~~~a-vlr~~~r~~L~~G~VV~Ld~s~a 292 (345)
.+.-..++..+... ..+||++-...... .+.+.-+..|..|.++.|..+..
T Consensus 396 qeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~ 448 (617)
T PRK14086 396 QEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPEL 448 (617)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCH
Confidence 22223455555443 34555433321000 12333444444699999998765
No 237
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=96.35 E-value=0.036 Score=55.38 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=70.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhh-hccChHHHHHHHHHHHHHHhcCCCEEEEcCCC
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWM-LAEGSDSVVNGECDVLESLSSHVRAVVATLGG 265 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~-~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG 265 (345)
.-+++.|+.|||||+|...|++. |...+|+-.+.+- .|-....+- ...-...|...-...|.++.....++|=+-+-
T Consensus 142 ~~ivl~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aeh-rGS~fG~~~~~qpsQ~~Fe~~l~~~l~~~~~~~~i~vE~Es~ 219 (345)
T PRK11784 142 PLVVLGGNTGSGKTELLQALANA-GAQVLDLEGLANH-RGSSFGRLGGPQPSQKDFENLLAEALLKLDPARPIVVEDESR 219 (345)
T ss_pred ceEecCCCCcccHHHHHHHHHhc-CCeEEECCchhhh-ccccccCCCCCCcchHHHHHHHHHHHHcCCCCCeEEEEeccc
Confidence 34778999999999999999876 8889999996653 332322222 23445567766666666665533455522221
Q ss_pred CCc-ccCcHHHHHHHhcCcEEEEEcChh
Q 019172 266 QQG-AAARADKWQHLYAGFTVWLSQTEA 292 (345)
Q Consensus 266 ~~~-avlr~~~r~~L~~G~VV~Ld~s~a 292 (345)
.-| +.+-+.-++.|+.+.+|+|++|.+
T Consensus 220 ~IG~~~lP~~l~~~m~~~~~v~i~~~~e 247 (345)
T PRK11784 220 RIGRVHLPEALYEAMQQAPIVVVEAPLE 247 (345)
T ss_pred cccCccCCHHHHHHHhhCCEEEEECCHH
Confidence 111 457777889999999999999987
No 238
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.0035 Score=67.87 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=32.6
Q ss_pred hhcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeC
Q 019172 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (345)
Q Consensus 182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~ 217 (345)
..++|.-++|+||||.|||++|+-+|++||..|+-+
T Consensus 346 ~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~ 381 (782)
T COG0466 346 KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRI 381 (782)
T ss_pred ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEE
Confidence 456778899999999999999999999999999875
No 239
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.31 E-value=0.0041 Score=52.59 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=28.3
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLE 222 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE 222 (345)
.+..+.|+|++||||||+.+.+. -|--.++.|++.+
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~--~G~i~~~g~di~~ 49 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI--KRKHRLVGDDNVE 49 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh--CCeEEEeeEeHHH
Confidence 35779999999999999999987 4445667777543
No 240
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.30 E-value=0.0052 Score=63.66 Aligned_cols=129 Identities=16% Similarity=0.099 Sum_probs=68.5
Q ss_pred CcceEEeecccceeeeeeecCcccc------------------c-ccceeEecCCceEEE--EeeccCCccceeeecccc
Q 019172 78 TSQYEFSDGSAEIELRLQLGSLEIQ------------------S-SKDIFVDADGTCLTV--RVNRSGSFITLIETNQLF 136 (345)
Q Consensus 78 ~~~y~~~~~~~Ele~rl~l~~~~~~------------------~-sr~i~I~~~d~~L~~--~vls~~~~~tlIe~k~l~ 136 (345)
-+.|=|.-+.+.|.+.+.+...... + .+++..+-||.+.-+ .=+.++-..+-|+ +.|.
T Consensus 64 y~vyl~~~d~~~~~l~~~~~~t~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ 142 (459)
T PRK11331 64 YPVILYYKDFDELVLAYGISDTNEPHAQWQFSSDIPKTIAEYFQATSGVYPKKYGQSYYACSQKVSQGLDYTRFA-SMLD 142 (459)
T ss_pred eEEEEEeccCCEEEEEEecCCCccHHHHHHHHhhHHHHHHHHHhcccCCCccccCceeEeeccccccCCCHHHHH-HHHh
Confidence 3478888888888888888775551 1 235666666655322 1123333334444 5555
Q ss_pred ccccCCCceeeecccceeehcccc-------CCCCCcchhHhhHHHHHHhhhhhcCCceEEEEcCCCCChHHHHHHHHHh
Q 019172 137 DKIKPTETIWYIDEDQLVINLKKQ-------DPELKWPDIVESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVG 209 (345)
Q Consensus 137 ~~i~p~Etiw~~Dd~~~~~~~k~~-------~~~~~~~~~~~~~~~l~a~~~~~l~~~~IvLIG~~GSGKSTVAk~LA~~ 209 (345)
+.+.-+..+-..+.+.+.-..+.+ -.+.-.+. ...+.+ ......+++|+|.|++|+|||++|+.||..
T Consensus 143 ~~i~~~~~~~~s~~~~~~p~~~~~~y~~~~~l~d~~i~e--~~le~l---~~~L~~~~~iil~GppGtGKT~lA~~la~~ 217 (459)
T PRK11331 143 NIINDYKLIFNSGKSVIPPMSKTESYCLEDALNDLFIPE--TTIETI---LKRLTIKKNIILQGPPGVGKTFVARRLAYL 217 (459)
T ss_pred hHHHHHHHhhccccccCCchhcccchhHHHHhhcccCCH--HHHHHH---HHHHhcCCCEEEECCCCCCHHHHHHHHHHH
Confidence 544433222222222111111110 00011111 011111 223446889999999999999999999999
Q ss_pred hCC
Q 019172 210 LGY 212 (345)
Q Consensus 210 Lg~ 212 (345)
++.
T Consensus 218 l~~ 220 (459)
T PRK11331 218 LTG 220 (459)
T ss_pred hcC
Confidence 863
No 241
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.30 E-value=0.0037 Score=65.57 Aligned_cols=29 Identities=17% Similarity=0.142 Sum_probs=26.4
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYT 213 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~ 213 (345)
.++.|+|.|+||+|||++++.+|..|+.+
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 35789999999999999999999999866
No 242
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.23 E-value=0.0082 Score=55.08 Aligned_cols=34 Identities=24% Similarity=0.207 Sum_probs=28.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHH
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKEL 220 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~l 220 (345)
+.|+|+|+.|+||||....||.++. ..++.+|.+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~ 40 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTY 40 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTS
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCC
Confidence 5689999999999999888888775 567888876
No 243
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.23 E-value=0.037 Score=53.27 Aligned_cols=35 Identities=20% Similarity=0.171 Sum_probs=28.9
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhh---C--CceeeCcHH
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKEL 220 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~L---g--~~fID~D~l 220 (345)
++.|.++|++|+||||++..||..+ | ..++|+|.+
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 4678899999999999999998877 4 446899953
No 244
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.23 E-value=0.015 Score=59.87 Aligned_cols=36 Identities=22% Similarity=0.174 Sum_probs=30.3
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKEL 220 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~l 220 (345)
.+..|+++|++|+||||++..||..|. .-++++|.+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 356799999999999999999998773 556888876
No 245
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.21 E-value=0.0049 Score=63.44 Aligned_cols=34 Identities=18% Similarity=0.068 Sum_probs=30.4
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D 218 (345)
.++.++|.|++|+|||++++.+|..++.+|+..+
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~ 249 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVV 249 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEe
Confidence 4578999999999999999999999999988653
No 246
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.20 E-value=0.0045 Score=62.35 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=24.5
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCC
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGY 212 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~ 212 (345)
.+-++|+|++|+||||+++.||+.|+.
T Consensus 78 r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 78 KQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 466789999999999999999999975
No 247
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.014 Score=59.83 Aligned_cols=35 Identities=17% Similarity=0.106 Sum_probs=32.0
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHH
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL 220 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~l 220 (345)
.+.|+|.|+||+|||.+|+.+|..++.+|+..+.-
T Consensus 276 ~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~ 310 (494)
T COG0464 276 PKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS 310 (494)
T ss_pred CCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH
Confidence 45799999999999999999999999999988875
No 248
>PRK13695 putative NTPase; Provisional
Probab=96.16 E-value=0.0063 Score=53.60 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=24.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhh---CCce
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGL---GYTP 214 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~L---g~~f 214 (345)
|+|+|+|.+|+||||+.+.++..+ |+..
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l~~~G~~~ 31 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELLKEEGYKV 31 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 679999999999999999988776 5653
No 249
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.15 E-value=0.0069 Score=52.28 Aligned_cols=30 Identities=17% Similarity=0.120 Sum_probs=19.8
Q ss_pred cCCceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYT 213 (345)
Q Consensus 184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~ 213 (345)
..+.+++|+|.+|+|||++.+.+.+.+.-.
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 356789999999999999999887776543
No 250
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.14 E-value=0.014 Score=63.15 Aligned_cols=34 Identities=24% Similarity=0.227 Sum_probs=30.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh----------CCceeeCc
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL----------GYTPLSTK 218 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L----------g~~fID~D 218 (345)
...|++|+|+||+|||++++.||+++ ++.++..|
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~ 245 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLD 245 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEec
Confidence 46689999999999999999999998 77788777
No 251
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.12 E-value=0.021 Score=58.80 Aligned_cols=35 Identities=17% Similarity=0.156 Sum_probs=29.8
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhh---C--CceeeCcHH
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKEL 220 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~L---g--~~fID~D~l 220 (345)
+..|.|+|+.|+||||++..||..| | .-++++|.+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~ 139 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTF 139 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence 4578899999999999999999877 4 467899986
No 252
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.11 E-value=0.005 Score=56.33 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.5
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhC
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLG 211 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg 211 (345)
.++|+|+|+||+||||+.+.+|+.|.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 57899999999999999999997664
No 253
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.08 E-value=0.0055 Score=54.95 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=21.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHhh
Q 019172 188 SIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 188 ~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
+|+|+|.+|+||||+.+.+.+.|
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 68999999999999999999999
No 254
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.08 E-value=0.0088 Score=53.94 Aligned_cols=41 Identities=17% Similarity=0.329 Sum_probs=32.6
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHh-----hCCceeeCcHHHHHHH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVG-----LGYTPLSTKELLETFA 225 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~-----Lg~~fID~D~lIE~~~ 225 (345)
.+.+++|.|++|+|||.+|..++.. ....|++.++++++..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~ 91 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELK 91 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccc
Confidence 4789999999999999999999863 4477899999988765
No 255
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.08 E-value=0.0087 Score=58.23 Aligned_cols=31 Identities=16% Similarity=0.069 Sum_probs=27.7
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCceee
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLS 216 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID 216 (345)
..+++|.|++|+||||+++.+|..++..+.-
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~~~ 81 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMGVNIRI 81 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhCCCeEE
Confidence 4589999999999999999999999987643
No 256
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=96.07 E-value=0.0095 Score=53.29 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=30.2
Q ss_pred HHhhhhhc-CCceEEEEcCCCCChHHHHHHHHHhhCC
Q 019172 177 TAGSMQLL-KGTSIFLVGDSTEVNEKVALELAVGLGY 212 (345)
Q Consensus 177 ~a~~~~~l-~~~~IvLIG~~GSGKSTVAk~LA~~Lg~ 212 (345)
.....+.+ .+..|+|.|.-||||||+.|.+++.||.
T Consensus 15 g~~l~~~l~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 15 GERLAEALKAGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred HHHHHhhCCCCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 33344555 6788999999999999999999999994
No 257
>PRK08727 hypothetical protein; Validated
Probab=96.06 E-value=0.025 Score=52.71 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=27.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhh---CC--ceeeCcHHH
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGL---GY--TPLSTKELL 221 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~L---g~--~fID~D~lI 221 (345)
..|+|.|.+|+|||.+++.++..+ |. .|+.++++.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~ 81 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA 81 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh
Confidence 459999999999999999985543 43 577777654
No 258
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.03 E-value=0.023 Score=58.19 Aligned_cols=35 Identities=17% Similarity=0.177 Sum_probs=29.2
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhh-------CCceeeCcHH
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGL-------GYTPLSTKEL 220 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~L-------g~~fID~D~l 220 (345)
+..|+|+|+.|+||||++..||..+ ...+|++|.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 5689999999999999888887654 2678999985
No 259
>PRK09183 transposase/IS protein; Provisional
Probab=96.02 E-value=0.0076 Score=57.43 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=30.0
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh---C--CceeeCcHHHHH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKELLET 223 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L---g--~~fID~D~lIE~ 223 (345)
.+.+++|+|++|+|||+++..++..+ | ..|+++.+++..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~ 144 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQ 144 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHH
Confidence 46889999999999999999997553 3 346666666543
No 260
>PRK08181 transposase; Validated
Probab=96.02 E-value=0.018 Score=55.59 Aligned_cols=40 Identities=23% Similarity=0.412 Sum_probs=33.0
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh---C--CceeeCcHHHHHH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKELLETF 224 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L---g--~~fID~D~lIE~~ 224 (345)
.+.+++|+|++|+|||.++..++..+ | .-|+.+++++++.
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l 149 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL 149 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence 56889999999999999999998643 4 6678888887754
No 261
>PF05729 NACHT: NACHT domain
Probab=96.01 E-value=0.0065 Score=51.12 Aligned_cols=27 Identities=15% Similarity=0.230 Sum_probs=23.2
Q ss_pred eEEEEcCCCCChHHHHHHHHHhhCCce
Q 019172 188 SIFLVGDSTEVNEKVALELAVGLGYTP 214 (345)
Q Consensus 188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~f 214 (345)
-++|.|.+|+||||+++.++..+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 478999999999999999998876443
No 262
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.99 E-value=0.0052 Score=50.56 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=21.3
Q ss_pred EEEEcCCCCChHHHHHHHHHhhC
Q 019172 189 IFLVGDSTEVNEKVALELAVGLG 211 (345)
Q Consensus 189 IvLIG~~GSGKSTVAk~LA~~Lg 211 (345)
|+|.|++|+|||++++.||+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998876
No 263
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.99 E-value=0.0061 Score=66.62 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=28.0
Q ss_pred eEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (345)
Q Consensus 188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D 218 (345)
+++|+|++|+|||++|+.||+.++.+++..|
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id 520 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFD 520 (758)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcEEee
Confidence 6889999999999999999999998886544
No 264
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.98 E-value=0.012 Score=60.53 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=29.5
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhh----C--CceeeCcHH
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGL----G--YTPLSTKEL 220 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~L----g--~~fID~D~l 220 (345)
+..|+|+|++|+||||++..||..+ | ..++++|.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~ 263 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNY 263 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccch
Confidence 4568899999999999999999755 2 567999985
No 265
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.98 E-value=0.0064 Score=49.91 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=20.2
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhh
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
+..++|+|.+|+|||++++.+++.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999987
No 266
>PRK06526 transposase; Provisional
Probab=95.98 E-value=0.026 Score=53.93 Aligned_cols=40 Identities=10% Similarity=0.217 Sum_probs=30.1
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh---C--CceeeCcHHHHHH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKELLETF 224 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L---g--~~fID~D~lIE~~ 224 (345)
.+.+++|+|++|+|||+++..|+..+ | .-|+...+++++.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l 141 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARL 141 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHH
Confidence 46799999999999999999997764 3 3355555555544
No 267
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=95.98 E-value=0.022 Score=50.09 Aligned_cols=21 Identities=10% Similarity=-0.018 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHHHHHHh
Q 019172 189 IFLVGDSTEVNEKVALELAVG 209 (345)
Q Consensus 189 IvLIG~~GSGKSTVAk~LA~~ 209 (345)
++|+|+.||||||+.+.+.+.
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 679999999999999987765
No 268
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.0058 Score=66.38 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=31.7
Q ss_pred hcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeC
Q 019172 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (345)
Q Consensus 183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~ 217 (345)
..+|+-|.++||||.|||+||+.+|++||..|+-.
T Consensus 435 s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRf 469 (906)
T KOG2004|consen 435 SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRF 469 (906)
T ss_pred cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEE
Confidence 44688999999999999999999999999999864
No 269
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.95 E-value=0.035 Score=58.05 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=25.4
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYT 213 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~ 213 (345)
+..++|.|++|+||||+|+.+|+.|++.
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 4458999999999999999999999985
No 270
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.95 E-value=0.015 Score=62.29 Aligned_cols=34 Identities=12% Similarity=0.090 Sum_probs=30.6
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE 219 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~ 219 (345)
++.|+|+|++|+|||++++.+|..++.+|+..+.
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~ 218 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISG 218 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEeh
Confidence 4579999999999999999999999999987653
No 271
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.94 E-value=0.0071 Score=65.94 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=29.9
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeC
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~ 217 (345)
++..++|+|++|+|||++|+.+|..++.+|+..
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i 378 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFVRF 378 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCeEEE
Confidence 456799999999999999999999999999854
No 272
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=95.93 E-value=0.0095 Score=53.09 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=29.6
Q ss_pred cCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172 184 LKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE 219 (345)
Q Consensus 184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~ 219 (345)
..++.|+|+|++|+||||++..|.++ |..++.=|.
T Consensus 12 ~~g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD~ 46 (149)
T cd01918 12 VGGIGVLITGPSGIGKSELALELIKR-GHRLVADDR 46 (149)
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECCE
Confidence 35789999999999999999998876 888885553
No 273
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=95.92 E-value=0.038 Score=48.37 Aligned_cols=30 Identities=17% Similarity=0.100 Sum_probs=24.9
Q ss_pred EEEEcCCCCChHHHHHHHHHhh-----CCceeeCc
Q 019172 189 IFLVGDSTEVNEKVALELAVGL-----GYTPLSTK 218 (345)
Q Consensus 189 IvLIG~~GSGKSTVAk~LA~~L-----g~~fID~D 218 (345)
|.++|..|+||||+.+.++..+ ....++.|
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D 36 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAID 36 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 6789999999999999999986 24456666
No 274
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.0074 Score=62.54 Aligned_cols=37 Identities=19% Similarity=0.122 Sum_probs=33.2
Q ss_pred hcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE 219 (345)
Q Consensus 183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~ 219 (345)
.|.+.||+|+|+.|+|||-+|+-||+-|+.||.=+|-
T Consensus 223 ~LeKSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDc 259 (564)
T KOG0745|consen 223 ELEKSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDC 259 (564)
T ss_pred eeecccEEEECCCCCchhHHHHHHHHHhCCCeEEecc
Confidence 4567899999999999999999999999999986664
No 275
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.89 E-value=0.012 Score=57.98 Aligned_cols=26 Identities=8% Similarity=0.198 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+.+|+|+|.+||||||+.+.|+..+
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 57899999999999999999998764
No 276
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.88 E-value=0.034 Score=57.13 Aligned_cols=35 Identities=23% Similarity=0.155 Sum_probs=28.5
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhh----C--CceeeCcHH
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGL----G--YTPLSTKEL 220 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~L----g--~~fID~D~l 220 (345)
+..|+++|++|+||||++..||..| | ..++|+|.+
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~ 139 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY 139 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 4578899999999999988888774 2 557999954
No 277
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.87 E-value=0.035 Score=56.61 Aligned_cols=37 Identities=5% Similarity=0.144 Sum_probs=29.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhh-----C--CceeeCcHHHHH
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGL-----G--YTPLSTKELLET 223 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~L-----g--~~fID~D~lIE~ 223 (345)
..++|.|++|+|||++++.++..+ + ..|+.++++..+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~ 192 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTND 192 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH
Confidence 459999999999999999999887 3 347777776543
No 278
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.87 E-value=0.0088 Score=60.80 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=29.3
Q ss_pred hhcCCceEEEEcCCCCChHHHHHHHHHhhC--CceeeCcH
Q 019172 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG--YTPLSTKE 219 (345)
Q Consensus 182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg--~~fID~D~ 219 (345)
..+.|+.|+|.|+||+|||.+|-.+|+.|| .||+.+..
T Consensus 46 ~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isg 85 (398)
T PF06068_consen 46 GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISG 85 (398)
T ss_dssp T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEG
T ss_pred ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEccc
Confidence 456789999999999999999999999999 88876643
No 279
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.86 E-value=0.0075 Score=65.16 Aligned_cols=34 Identities=18% Similarity=0.127 Sum_probs=30.6
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCc
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTK 218 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D 218 (345)
.++.|+|.|++|+|||++++.+|..++.+|+..+
T Consensus 211 ~~~giLL~GppGtGKT~laraia~~~~~~~i~i~ 244 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKAVANEAGAYFISIN 244 (733)
T ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCeEEEEe
Confidence 3578999999999999999999999999988654
No 280
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=95.86 E-value=0.012 Score=55.82 Aligned_cols=37 Identities=11% Similarity=0.007 Sum_probs=29.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCce-eeCcHHHHHH
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTP-LSTKELLETF 224 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~f-ID~D~lIE~~ 224 (345)
+-|.|+|++||||||+++.+.+ .|.++ +.+-+-+.+.
T Consensus 1 miI~i~G~~gsGKstva~~~~~-~g~~~~~~~~d~ik~~ 38 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIE-NYNAVKYQLADPIKEI 38 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHh-cCCcEEEehhHHHHHH
Confidence 4588999999999999999855 46666 7776666543
No 281
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.86 E-value=0.021 Score=58.35 Aligned_cols=34 Identities=9% Similarity=0.027 Sum_probs=29.8
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE 219 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~ 219 (345)
+..+.|-|++|+|||.+++++|..+|.+||-++.
T Consensus 148 PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa 181 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSA 181 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEH
Confidence 4567779999999999999999999999887664
No 282
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.84 E-value=0.0075 Score=50.23 Aligned_cols=27 Identities=22% Similarity=0.180 Sum_probs=24.1
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLG 211 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg 211 (345)
.+..+.|+|.+||||||+.+.|+..+.
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCCEEEEEccCCCccccceeeeccccc
Confidence 578899999999999999999987763
No 283
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.84 E-value=0.0072 Score=59.03 Aligned_cols=36 Identities=19% Similarity=0.111 Sum_probs=29.0
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhC-------CceeeCcHHH
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLG-------YTPLSTKELL 221 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg-------~~fID~D~lI 221 (345)
+.-|-|.|++||||||+++.|+..+. ...+.+|.+.
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 34577899999999999999988775 4467888765
No 284
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=95.83 E-value=0.046 Score=45.90 Aligned_cols=87 Identities=17% Similarity=0.348 Sum_probs=67.2
Q ss_pred cceEEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeecccceeehcc
Q 019172 79 SQYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLK 158 (345)
Q Consensus 79 ~~y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd~~~~~~~k 158 (345)
+.+.|.|....|.++|.++. .+++.|++...+|.|+..+. .-...-.+-++|..|.|.++.+..=.-.+.+.++
T Consensus 2 p~v~WaQr~~~V~ltI~v~d-----~~d~~v~l~~~~l~f~~~~~-~g~~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~L~ 75 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED-----SKDVKVDFEKSKLTFSCLNG-DNVKIYNEIELYDRVDPNDSKHKRTDRSILCCLR 75 (106)
T ss_pred CcceeeECCCEEEEEEEeCC-----CCCcEEEEecCEEEEEEECC-CCcEEEEEEEeecccCcccCeEEeCCceEEEEEE
Confidence 46789999999999999998 68999999999999988663 1111233468999999999888887777888888
Q ss_pred ccCCCCCcchhHh
Q 019172 159 KQDPELKWPDIVE 171 (345)
Q Consensus 159 ~~~~~~~~~~~~~ 171 (345)
|.+....||....
T Consensus 76 K~~~~~~WprL~k 88 (106)
T cd00237 76 KGKEGVAWPRLTK 88 (106)
T ss_pred eCCCCCCCchhhc
Confidence 8664434666543
No 285
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.81 E-value=0.04 Score=56.39 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=30.6
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh-----CCceeeCcHH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKEL 220 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L-----g~~fID~D~l 220 (345)
.+..|.|+|+.|+||||++..||..+ ...++++|.+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 35678899999999999999999766 2568999987
No 286
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=95.79 E-value=0.021 Score=54.60 Aligned_cols=121 Identities=17% Similarity=0.082 Sum_probs=73.0
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHH--cCchh----hhhhc----cChHHHHHHHHHHHHHHhc
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFA--KQTID----SWMLA----EGSDSVVNGECDVLESLSS 254 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~--g~sI~----ei~~~----~Gee~FRelE~~vL~~L~~ 254 (345)
++...+|+|.+|+||.|.+..+++.+++..+.+-+++.+.. +.... +++.. ..+-.++ +....|....
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~-~l~~~l~~~~- 91 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVR-LLEKRLENPR- 91 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHH-HHHhhccccc-
Confidence 46789999999999999999999999999999999877643 22211 11111 0111222 2222222221
Q ss_pred CCCEEEEcCCCCCcccCcHH-HHHHHh----cCcEEEEEcChhhhchhhhhhhccccccccccc
Q 019172 255 HVRAVVATLGGQQGAAARAD-KWQHLY----AGFTVWLSQTEAMGKLLRVFVLSLHLRSVTSYF 313 (345)
Q Consensus 255 ~~~~VIAtGGG~~~avlr~~-~r~~L~----~G~VV~Ld~s~a~~~~~Rv~v~~~h~R~~~~~~ 313 (345)
..+..+-.|- +-+-. ...++. -..||-|++|.+.. ..|+.-+..|.=+...|+
T Consensus 92 ~~~~~ildg~-----Prt~~qa~~l~~~~~~~d~Vi~l~vp~~~L-~~ri~~r~ihp~sG~~Yh 149 (235)
T KOG3078|consen 92 CQKGFILDGF-----PRTVQQAEELLDRIAQIDLVINLKVPEEVL-VDRITGRRIHPASGRVYH 149 (235)
T ss_pred cccccccCCC-----CcchHHHHHHHHccCCcceEEEecCCHHHH-HHHHhcccccCcccceec
Confidence 1122332221 22221 222232 26799999999987 788888888887666665
No 287
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=95.78 E-value=0.0071 Score=51.99 Aligned_cols=62 Identities=6% Similarity=0.118 Sum_probs=37.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchh--------hhhhccChHHHHHHHHHHHH
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTID--------SWMLAEGSDSVVNGECDVLE 250 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~--------ei~~~~Gee~FRelE~~vL~ 250 (345)
.+|+|+|.+|+||||+...++..--..-.+ .-+.......+. ++++..|.+.|+.+....++
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 71 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYD--PTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIK 71 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccC--CcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHh
Confidence 469999999999999999987443222111 111111111111 45677888888776655544
No 288
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.77 E-value=0.013 Score=60.69 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=24.5
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCC
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGY 212 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~ 212 (345)
+..++|.|++|+||||+|+.+|+.+++
T Consensus 36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 445899999999999999999999986
No 289
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.75 E-value=0.038 Score=56.15 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=30.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhC---------CceeeCcHH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLG---------YTPLSTKEL 220 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg---------~~fID~D~l 220 (345)
.+..|+++|+.|+||||.+..||..+. ..++++|.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~ 217 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNY 217 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCc
Confidence 356799999999999999999998763 558999986
No 290
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.73 E-value=0.0091 Score=54.06 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999999765
No 291
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.71 E-value=0.022 Score=57.67 Aligned_cols=36 Identities=22% Similarity=0.284 Sum_probs=30.0
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh----C---CceeeCcHH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL----G---YTPLSTKEL 220 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L----g---~~fID~D~l 220 (345)
++..|.|+|++|+||||+...||..+ | ..++.+|.+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~ 178 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY 178 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 46789999999999999999999753 3 357888886
No 292
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.71 E-value=0.0088 Score=57.54 Aligned_cols=37 Identities=30% Similarity=0.246 Sum_probs=28.5
Q ss_pred cCCceEEEEcCCCCChHHHHHHHHHhh----CCceeeCcHH
Q 019172 184 LKGTSIFLVGDSTEVNEKVALELAVGL----GYTPLSTKEL 220 (345)
Q Consensus 184 l~~~~IvLIG~~GSGKSTVAk~LA~~L----g~~fID~D~l 220 (345)
-.|..+-|+|.+||||||+++.||-.. |--.+|+..+
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~ 71 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPL 71 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCccc
Confidence 368899999999999999999998544 3445565433
No 293
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.71 E-value=0.016 Score=55.43 Aligned_cols=30 Identities=17% Similarity=0.078 Sum_probs=25.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHhhCCceeeC
Q 019172 188 SIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (345)
Q Consensus 188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~ 217 (345)
.++|.|++|+||||+++.+++.++.+++..
T Consensus 45 ~lll~G~~G~GKT~la~~l~~~~~~~~~~i 74 (316)
T PHA02544 45 MLLHSPSPGTGKTTVAKALCNEVGAEVLFV 74 (316)
T ss_pred EEEeeCcCCCCHHHHHHHHHHHhCccceEe
Confidence 344489999999999999999998776654
No 294
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.70 E-value=0.0096 Score=52.95 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 17 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 17 RGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999998765
No 295
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.70 E-value=0.0099 Score=49.39 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=27.3
Q ss_pred EEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHHHH
Q 019172 189 IFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELLE 222 (345)
Q Consensus 189 IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~lIE 222 (345)
++|+|++|+||||++..++..+. ..|++.+....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence 67899999999999999988874 55677765543
No 296
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.69 E-value=0.02 Score=59.73 Aligned_cols=36 Identities=22% Similarity=0.284 Sum_probs=29.6
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh----C---CceeeCcHH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL----G---YTPLSTKEL 220 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L----g---~~fID~D~l 220 (345)
++..|.|+|+.|+||||....||..+ | .-+++.|.+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~ 297 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSY 297 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCcc
Confidence 35678899999999999999999766 2 457888885
No 297
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=95.69 E-value=0.047 Score=43.66 Aligned_cols=85 Identities=15% Similarity=0.291 Sum_probs=64.5
Q ss_pred ceEEeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCCccceeeeccccccccCCCceeeecccceeehccc
Q 019172 80 QYEFSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGSFITLIETNQLFDKIKPTETIWYIDEDQLVINLKK 159 (345)
Q Consensus 80 ~y~~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~~~tlIe~k~l~~~i~p~Etiw~~Dd~~~~~~~k~ 159 (345)
+|+|.|+.+.|-+.|..++.+ ..++.|.+...++.|.+.-.....-.++ -.||..|.|.++.|.+....+.+.++|
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~---~~~~~v~~~~~~l~v~~~~~~~~~y~~~-l~L~~~I~~~~s~~~v~~~kvei~L~K 77 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSN---PELSVVEANSTVLTIHIVFEGNKEFQLD-IELWGVIDVEKSSVNMLPTKVEIKLRK 77 (87)
T ss_pred CccEeeCCCEEEEEEEECcCC---ccceEEEecCCEEEEEEECCCCceEEEE-eeccceEChhHcEEEecCcEEEEEEEe
Confidence 699999999999999887633 4577888777787776543332222333 479999999999999999999999999
Q ss_pred cCCCCCcchh
Q 019172 160 QDPELKWPDI 169 (345)
Q Consensus 160 ~~~~~~~~~~ 169 (345)
.... .||..
T Consensus 78 ~~~~-~W~~L 86 (87)
T cd06488 78 AEPG-SWAKL 86 (87)
T ss_pred CCCC-cCccC
Confidence 7754 67653
No 298
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.069 Score=53.57 Aligned_cols=104 Identities=15% Similarity=0.131 Sum_probs=64.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeC--cHHHHHHHcCc--------------------hhhhh-----hcc-Ch
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAKQT--------------------IDSWM-----LAE-GS 238 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~--D~lIE~~~g~s--------------------I~ei~-----~~~-Ge 238 (345)
+.|+|.|+||.|||-+|+++|..-+-+|+.. -+++.+-+|.+ |+++- ..+ -.
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEs 246 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENES 246 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCch
Confidence 3599999999999999999999999999865 44544333322 23331 112 23
Q ss_pred HHHHHHHHHHHHHHhc---CCCEEEEcCCCCCcccCcHHHHHHHhcCcEEEEEcChh
Q 019172 239 DSVVNGECDVLESLSS---HVRAVVATLGGQQGAAARADKWQHLYAGFTVWLSQTEA 292 (345)
Q Consensus 239 e~FRelE~~vL~~L~~---~~~~VIAtGGG~~~avlr~~~r~~L~~G~VV~Ld~s~a 292 (345)
++-|++-++.|-++.- ....|+..|+-.--.++....|.. ...-||+-.|++
T Consensus 247 easRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRR--FekRIYIPLPe~ 301 (439)
T KOG0739|consen 247 EASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRR--FEKRIYIPLPEA 301 (439)
T ss_pred HHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHH--hhcceeccCCcH
Confidence 5678888888877753 234677777642111233322222 245678877766
No 299
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=95.69 E-value=0.0087 Score=54.53 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=29.3
Q ss_pred EEEEcCCCCChHHHHHHHHHhhC-CceeeCcHH
Q 019172 189 IFLVGDSTEVNEKVALELAVGLG-YTPLSTKEL 220 (345)
Q Consensus 189 IvLIG~~GSGKSTVAk~LA~~Lg-~~fID~D~l 220 (345)
|+=|+..||||||+|..|+..+| |..+-.|++
T Consensus 2 lvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI 34 (168)
T PF08303_consen 2 LVPIATIGCGKTTVALALSNLFGEWGHVQNDNI 34 (168)
T ss_pred EeeecCCCcCHHHHHHHHHHHcCCCCccccCCC
Confidence 44489999999999999999999 999999995
No 300
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.013 Score=64.14 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=34.1
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCceeeC--cHHHHHHHc
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAK 226 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~--D~lIE~~~g 226 (345)
++.++|+|+||+|||-+||++|-.-|.||+.+ -+++|-..|
T Consensus 344 PkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g 386 (774)
T KOG0731|consen 344 PKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVG 386 (774)
T ss_pred cCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcc
Confidence 57899999999999999999999999999876 344444333
No 301
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.67 E-value=0.0099 Score=53.78 Aligned_cols=26 Identities=23% Similarity=0.087 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 57889999999999999999998765
No 302
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.66 E-value=0.011 Score=63.94 Aligned_cols=35 Identities=26% Similarity=0.317 Sum_probs=29.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHhhCCcee--eCcHHHH
Q 019172 188 SIFLVGDSTEVNEKVALELAVGLGYTPL--STKELLE 222 (345)
Q Consensus 188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fI--D~D~lIE 222 (345)
+++++|++|+|||++|+.||+.++.+++ |+.++.+
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~ 522 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYME 522 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhh
Confidence 5789999999999999999999997765 4545544
No 303
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.66 E-value=0.01 Score=53.48 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 57889999999999999999998765
No 304
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.66 E-value=0.009 Score=53.01 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHH
Q 019172 187 TSIFLVGDSTEVNEKVALELAV 208 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~ 208 (345)
++|+|||..|||||||.+.|-.
T Consensus 2 krimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcC
Confidence 5799999999999999998854
No 305
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=95.65 E-value=0.0095 Score=56.65 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=27.1
Q ss_pred eEEEEcCCCCChHHHHHHHHHhhCCceeeCcHH
Q 019172 188 SIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL 220 (345)
Q Consensus 188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~l 220 (345)
-++|+|+.|+|||.+|-.||+++|.+.|..|.+
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Dri 35 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRI 35 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecce
Confidence 467899999999999999999999999999986
No 306
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.65 E-value=0.01 Score=53.47 Aligned_cols=26 Identities=15% Similarity=0.058 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57789999999999999999999654
No 307
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.65 E-value=0.01 Score=54.57 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.|+-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999999765
No 308
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.65 E-value=0.015 Score=57.68 Aligned_cols=28 Identities=21% Similarity=0.157 Sum_probs=24.6
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYT 213 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~ 213 (345)
+..++|.|++|+||||+|+.+|+.+.+.
T Consensus 38 ~h~~L~~Gp~G~GKTtla~~la~~l~c~ 65 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIARLLAKSLNCQ 65 (363)
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHhcCC
Confidence 3457899999999999999999999853
No 309
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.65 E-value=0.01 Score=53.39 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.||-.+
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 57889999999999999999999765
No 310
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.64 E-value=0.012 Score=52.78 Aligned_cols=27 Identities=11% Similarity=0.110 Sum_probs=24.3
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLG 211 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg 211 (345)
.+.+|+|+|++||||||+.+.|+..+.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 478999999999999999999988764
No 311
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=95.62 E-value=0.011 Score=53.44 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999998764
No 312
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.62 E-value=0.011 Score=53.47 Aligned_cols=26 Identities=19% Similarity=0.018 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.|+-.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999998754
No 313
>PRK05642 DNA replication initiation factor; Validated
Probab=95.61 E-value=0.034 Score=51.96 Aligned_cols=106 Identities=13% Similarity=0.097 Sum_probs=57.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHHh-----hCCceeeCcHHHHHHH-------cCc---hhhhhhccChHHHHHHHHHHHHH
Q 019172 187 TSIFLVGDSTEVNEKVALELAVG-----LGYTPLSTKELLETFA-------KQT---IDSWMLAEGSDSVVNGECDVLES 251 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~-----Lg~~fID~D~lIE~~~-------g~s---I~ei~~~~Gee~FRelE~~vL~~ 251 (345)
..++|.|.+|+|||.+++.++.. ....|++++++..... +.. ++++-...|.+.+.+.=..++..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~ 125 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDLDVIAGKADWEEALFHLFNR 125 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEechhhhcCChHHHHHHHHHHHH
Confidence 57899999999999999998753 4567899888764311 111 33332223333333322334444
Q ss_pred HhcCCC-EEEEcCCCCCccc-CcHHHHHHHhcCcEEEEEcChh
Q 019172 252 LSSHVR-AVVATLGGQQGAA-ARADKWQHLYAGFTVWLSQTEA 292 (345)
Q Consensus 252 L~~~~~-~VIAtGGG~~~av-lr~~~r~~L~~G~VV~Ld~s~a 292 (345)
+...+. .|+++........ ..++-+..+..|.++=|+.+..
T Consensus 126 ~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~ 168 (234)
T PRK05642 126 LRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSD 168 (234)
T ss_pred HHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCH
Confidence 443333 4444332211111 1344444444677777777554
No 314
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=95.61 E-value=0.019 Score=54.10 Aligned_cols=33 Identities=12% Similarity=-0.058 Sum_probs=26.0
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHH
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL 220 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~l 220 (345)
+..++|.|.+|+||||+|+.|+. ..-+++.|.-
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~~ 44 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDMS 44 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC--CCEEEecccc
Confidence 46799999999999999999972 3556666663
No 315
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.017 Score=58.60 Aligned_cols=43 Identities=16% Similarity=0.187 Sum_probs=37.0
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeC--cHHHHHHHcC
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAKQ 227 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~--D~lIE~~~g~ 227 (345)
.++.++|-|+||.|||-+||++|...+..||-. -+++.++.|.
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGE 228 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGE 228 (406)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhcc
Confidence 478899999999999999999999999999875 5666666663
No 316
>PRK14974 cell division protein FtsY; Provisional
Probab=95.59 E-value=0.077 Score=52.93 Aligned_cols=35 Identities=20% Similarity=0.158 Sum_probs=27.2
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhh---C--CceeeCcHH
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGL---G--YTPLSTKEL 220 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~L---g--~~fID~D~l 220 (345)
+..|+++|++|+||||+...||..| | ..++++|.+
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 4678999999999999777777654 3 446888854
No 317
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.57 E-value=0.059 Score=53.99 Aligned_cols=37 Identities=8% Similarity=0.179 Sum_probs=29.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhh-----C--CceeeCcHHHHH
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGL-----G--YTPLSTKELLET 223 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~L-----g--~~fID~D~lIE~ 223 (345)
..++|.|++|+|||++++.++..+ + .-|+.++++..+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~ 180 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTND 180 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHH
Confidence 468999999999999999999876 3 447777776543
No 318
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.56 E-value=0.042 Score=54.57 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=33.4
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhh-----CCceeeCcHHHHHHH
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELLETFA 225 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~L-----g~~fID~D~lIE~~~ 225 (345)
..+++|.|++|+|||.++..+|..+ ...|+++++++....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~ 227 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILR 227 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHH
Confidence 4889999999999999999999876 356788888876543
No 319
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.03 Score=60.24 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=35.9
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCceeeC--cHHHHHHHcC
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAKQ 227 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~--D~lIE~~~g~ 227 (345)
+..|+|.|+||||||-+||++|..-|.-||.. -+++.++.|.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGE 588 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGE 588 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhh
Confidence 56899999999999999999999999999876 5666666553
No 320
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=95.55 E-value=0.012 Score=52.98 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.||-.+
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999999654
No 321
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.54 E-value=0.012 Score=54.02 Aligned_cols=27 Identities=19% Similarity=0.076 Sum_probs=23.8
Q ss_pred cCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 184 l~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
-.|..+.|+|++||||||+.+.|+-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 357889999999999999999998655
No 322
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=95.52 E-value=0.011 Score=54.17 Aligned_cols=26 Identities=15% Similarity=0.004 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.|+-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 57889999999999999999998654
No 323
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=95.51 E-value=0.011 Score=53.38 Aligned_cols=26 Identities=15% Similarity=0.127 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 57889999999999999999998765
No 324
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=95.51 E-value=0.012 Score=53.59 Aligned_cols=26 Identities=23% Similarity=0.051 Sum_probs=24.0
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.|+-.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 57889999999999999999999877
No 325
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=95.51 E-value=0.011 Score=53.43 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999998664
No 326
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.50 E-value=0.013 Score=53.41 Aligned_cols=26 Identities=19% Similarity=0.150 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999999764
No 327
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.50 E-value=0.012 Score=53.45 Aligned_cols=26 Identities=23% Similarity=0.070 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999998664
No 328
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=95.49 E-value=0.012 Score=54.02 Aligned_cols=27 Identities=11% Similarity=0.063 Sum_probs=23.9
Q ss_pred cCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 184 l~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
-.+..+.|+|++||||||+.+.|+-.+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 357889999999999999999998665
No 329
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.48 E-value=0.013 Score=53.17 Aligned_cols=26 Identities=23% Similarity=0.128 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999998764
No 330
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=95.48 E-value=0.013 Score=52.46 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.|+-.+
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 57889999999999999999999765
No 331
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.48 E-value=0.013 Score=53.72 Aligned_cols=26 Identities=15% Similarity=0.036 Sum_probs=24.0
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.||..+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999999776
No 332
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=95.47 E-value=0.025 Score=55.10 Aligned_cols=49 Identities=27% Similarity=0.326 Sum_probs=35.0
Q ss_pred HhhHHHHHHhhhhhcCCceEEEEcCCCCChHHHHHHHHHhhCCcee-eCcHHHH
Q 019172 170 VESWESLTAGSMQLLKGTSIFLVGDSTEVNEKVALELAVGLGYTPL-STKELLE 222 (345)
Q Consensus 170 ~~~~~~l~a~~~~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fI-D~D~lIE 222 (345)
...|..+.. ...+.-|+|=|.+|.||||+|..||.+||.+.+ .+|.+-|
T Consensus 77 Y~lwR~ir~----~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IRE 126 (299)
T COG2074 77 YLLWRRIRK----MKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIRE 126 (299)
T ss_pred HHHHHHHhc----cCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHH
Confidence 345655442 334556666789999999999999999998765 5555433
No 333
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=95.46 E-value=0.013 Score=52.76 Aligned_cols=26 Identities=19% Similarity=0.054 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999999765
No 334
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.46 E-value=0.037 Score=54.45 Aligned_cols=26 Identities=8% Similarity=0.132 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+.+++|.|++|+|||++.+.+++.+
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999876
No 335
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=95.45 E-value=0.013 Score=53.03 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.|+-.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 27 KGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57789999999999999999999765
No 336
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.44 E-value=0.015 Score=63.80 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=29.7
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeC
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~ 217 (345)
++..|+|+|++|+||||+++.+|+.++.+|+..
T Consensus 348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i 380 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLGQSIAKATGRKYVRM 380 (784)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 567899999999999999999999999998644
No 337
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.43 E-value=0.013 Score=52.63 Aligned_cols=26 Identities=27% Similarity=0.198 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 57889999999999999999998765
No 338
>PRK12377 putative replication protein; Provisional
Probab=95.43 E-value=0.065 Score=51.20 Aligned_cols=39 Identities=10% Similarity=0.167 Sum_probs=31.8
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhC---C--ceeeCcHHHHHH
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLG---Y--TPLSTKELLETF 224 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg---~--~fID~D~lIE~~ 224 (345)
..+++|.|++|+|||.++..+|..+. + .|+...+++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l 144 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL 144 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH
Confidence 46899999999999999999998873 3 477777777643
No 339
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=95.42 E-value=0.013 Score=53.73 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=23.9
Q ss_pred cCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 184 l~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
..|..+.|+|++||||||+.+.|+-.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGHP 50 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357889999999999999999998763
No 340
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.41 E-value=0.014 Score=51.37 Aligned_cols=26 Identities=19% Similarity=0.068 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.||-.+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999998764
No 341
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.41 E-value=0.015 Score=55.54 Aligned_cols=24 Identities=17% Similarity=0.126 Sum_probs=22.6
Q ss_pred eEEEEcCCCCChHHHHHHHHHhhC
Q 019172 188 SIFLVGDSTEVNEKVALELAVGLG 211 (345)
Q Consensus 188 ~IvLIG~~GSGKSTVAk~LA~~Lg 211 (345)
+++|.|++|+||||+++.+|+.+.
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 799999999999999999999884
No 342
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.40 E-value=0.014 Score=53.45 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999999665
No 343
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=95.40 E-value=0.014 Score=53.20 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.|+-.+
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 57889999999999999999999765
No 344
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=95.39 E-value=0.014 Score=53.82 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.||-.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999998654
No 345
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.38 E-value=0.015 Score=51.47 Aligned_cols=26 Identities=19% Similarity=0.079 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999998554
No 346
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.37 E-value=0.015 Score=52.15 Aligned_cols=26 Identities=8% Similarity=0.024 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|.+||||||+.+.|+-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 47789999999999999999998875
No 347
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.37 E-value=0.014 Score=54.31 Aligned_cols=28 Identities=18% Similarity=0.064 Sum_probs=24.5
Q ss_pred cCCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172 184 LKGTSIFLVGDSTEVNEKVALELAVGLG 211 (345)
Q Consensus 184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg 211 (345)
..|..|.|+|++||||||+-|++|....
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhccC
Confidence 3578899999999999999999997653
No 348
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=95.35 E-value=0.015 Score=53.17 Aligned_cols=26 Identities=12% Similarity=0.077 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999998654
No 349
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.34 E-value=0.021 Score=59.83 Aligned_cols=29 Identities=14% Similarity=0.074 Sum_probs=26.1
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCce
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYTP 214 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~f 214 (345)
...++|.|++|+||||+|+.+|+.|++..
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~ 71 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVNCSA 71 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 45799999999999999999999998853
No 350
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=95.33 E-value=0.015 Score=52.78 Aligned_cols=27 Identities=30% Similarity=0.278 Sum_probs=24.1
Q ss_pred cCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 184 l~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
..|..+.|+|++||||||+.+.|+-.+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357889999999999999999999665
No 351
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=95.32 E-value=0.0059 Score=63.76 Aligned_cols=38 Identities=26% Similarity=0.354 Sum_probs=29.6
Q ss_pred hcCCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHH
Q 019172 183 LLKGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLE 222 (345)
Q Consensus 183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE 222 (345)
...+.+++|+|++|+||||+++.++..+ +..+.++.++
T Consensus 208 a~~g~~vlliG~pGsGKTtlar~l~~ll--p~~~~~~~le 245 (499)
T TIGR00368 208 AAGGHNLLLFGPPGSGKTMLASRLQGIL--PPLTNEEAIE 245 (499)
T ss_pred ccCCCEEEEEecCCCCHHHHHHHHhccc--CCCCCcEEEe
Confidence 3467899999999999999999998875 4445555544
No 352
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.31 E-value=0.018 Score=46.43 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=20.5
Q ss_pred eEEEEcCCCCChHHHHHHHHHhhC
Q 019172 188 SIFLVGDSTEVNEKVALELAVGLG 211 (345)
Q Consensus 188 ~IvLIG~~GSGKSTVAk~LA~~Lg 211 (345)
+|+++|.+|+||||+-+.|+..-.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999998876643
No 353
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.30 E-value=0.052 Score=59.70 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=29.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh----------CCceeeCcH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL----------GYTPLSTKE 219 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L----------g~~fID~D~ 219 (345)
...+++|+|++|+|||++++.||+.+ +++++.+|-
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~ 243 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDI 243 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeH
Confidence 45689999999999999999999987 366766663
No 354
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.30 E-value=0.015 Score=68.89 Aligned_cols=38 Identities=13% Similarity=0.161 Sum_probs=33.0
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeC--cHHHH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLE 222 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~--D~lIE 222 (345)
.++.|.|+|++|+|||.+||+||...++||+.+ .++++
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~ 1668 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLD 1668 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhh
Confidence 467899999999999999999999999998765 45554
No 355
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=95.29 E-value=0.016 Score=52.14 Aligned_cols=26 Identities=12% Similarity=0.005 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 57889999999999999999998654
No 356
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.29 E-value=0.014 Score=52.49 Aligned_cols=29 Identities=31% Similarity=0.428 Sum_probs=24.0
Q ss_pred EEEEcCCCCChHHHHHHHHHhhC--CceeeC
Q 019172 189 IFLVGDSTEVNEKVALELAVGLG--YTPLST 217 (345)
Q Consensus 189 IvLIG~~GSGKSTVAk~LA~~Lg--~~fID~ 217 (345)
|+|+|.+|||||++|..+|...+ .-|+++
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at 32 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIAT 32 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEc
Confidence 68899999999999999998866 345544
No 357
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=95.29 E-value=0.016 Score=52.41 Aligned_cols=26 Identities=23% Similarity=0.072 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 57889999999999999999999765
No 358
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.29 E-value=0.016 Score=53.49 Aligned_cols=26 Identities=19% Similarity=0.081 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 27 SGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999998765
No 359
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=95.28 E-value=0.016 Score=53.34 Aligned_cols=26 Identities=15% Similarity=0.079 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.|+-.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 57889999999999999999998654
No 360
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=95.28 E-value=0.016 Score=53.10 Aligned_cols=26 Identities=8% Similarity=-0.164 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 12 ~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 12 YHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 57889999999999999999998654
No 361
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=95.27 E-value=0.016 Score=53.21 Aligned_cols=26 Identities=19% Similarity=0.100 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 47789999999999999999999765
No 362
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.26 E-value=0.015 Score=63.32 Aligned_cols=34 Identities=18% Similarity=0.236 Sum_probs=30.4
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE 219 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~ 219 (345)
.+-.+|+|++|.||||||..+|+.-||..+|+..
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqaGYsVvEINA 359 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINA 359 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhcCceEEEecc
Confidence 4556779999999999999999999999999854
No 363
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=95.25 E-value=0.015 Score=56.94 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=25.4
Q ss_pred eEEEEcCCCCChHHHHHHHHHhhCCceeeC
Q 019172 188 SIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (345)
Q Consensus 188 ~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~ 217 (345)
-|+|+|++||||||..+.| +-+||-+||-
T Consensus 3 ~vIiTGlSGaGKs~Al~~l-ED~Gy~cvDN 31 (284)
T PF03668_consen 3 LVIITGLSGAGKSTALRAL-EDLGYYCVDN 31 (284)
T ss_pred EEEEeCCCcCCHHHHHHHH-HhcCeeEEcC
Confidence 4788999999999999988 7788888874
No 364
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.24 E-value=0.015 Score=52.37 Aligned_cols=25 Identities=20% Similarity=0.064 Sum_probs=22.1
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+ .+.|+|++||||||+.+.|+-.+
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 36 78999999999999999999654
No 365
>PRK10867 signal recognition particle protein; Provisional
Probab=95.23 E-value=0.063 Score=55.34 Aligned_cols=35 Identities=23% Similarity=0.108 Sum_probs=28.0
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhh----C--CceeeCcHH
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGL----G--YTPLSTKEL 220 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~L----g--~~fID~D~l 220 (345)
+..|+++|++|+||||++..||..| | .-++|+|.+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~ 140 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY 140 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 4678899999999999887777755 3 457999954
No 366
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.22 E-value=0.017 Score=53.43 Aligned_cols=26 Identities=12% Similarity=0.115 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.|+-.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 57789999999999999999998664
No 367
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=95.21 E-value=0.017 Score=54.34 Aligned_cols=26 Identities=15% Similarity=0.077 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.|+-.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 26 SGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999999664
No 368
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.21 E-value=0.028 Score=60.90 Aligned_cols=28 Identities=18% Similarity=0.129 Sum_probs=25.3
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYT 213 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~ 213 (345)
...++|.|++|+||||+|+.||+.|++.
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4567899999999999999999999874
No 369
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=95.20 E-value=0.018 Score=53.55 Aligned_cols=26 Identities=15% Similarity=-0.051 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.|+-.+
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 57889999999999999999999654
No 370
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.038 Score=58.74 Aligned_cols=64 Identities=14% Similarity=0.167 Sum_probs=45.6
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHHHHHcCchhhhhhccChHHHHHHHHHHHHHHhcCCCEEE
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLETFAKQTIDSWMLAEGSDSVVNGECDVLESLSSHVRAVV 260 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE~~~g~sI~ei~~~~Gee~FRelE~~vL~~L~~~~~~VI 260 (345)
++.|+|+|+||.|||-+||++|-.-|.||+-+- |-..+|.+-.-|....|++-.++ .+...|||
T Consensus 337 PKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~s-------GSEFdEm~VGvGArRVRdLF~aA----k~~APcII 400 (752)
T KOG0734|consen 337 PKGVLLVGPPGTGKTLLARAVAGEAGVPFFYAS-------GSEFDEMFVGVGARRVRDLFAAA----KARAPCII 400 (752)
T ss_pred CCceEEeCCCCCchhHHHHHhhcccCCCeEecc-------ccchhhhhhcccHHHHHHHHHHH----HhcCCeEE
Confidence 468999999999999999999999999998752 22334444555666666654443 33445665
No 371
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.18 E-value=0.018 Score=53.41 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 28 GGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57789999999999999999999765
No 372
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.18 E-value=0.09 Score=53.91 Aligned_cols=38 Identities=8% Similarity=0.191 Sum_probs=30.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhh-------CCceeeCcHHHHHH
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGL-------GYTPLSTKELLETF 224 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~L-------g~~fID~D~lIE~~ 224 (345)
..++|.|++|+|||++++.+|..+ ..-|++.++++.+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~ 175 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDL 175 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence 469999999999999999999875 35677887765543
No 373
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.17 E-value=0.018 Score=51.67 Aligned_cols=25 Identities=28% Similarity=0.186 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~ 209 (345)
.+..+.|+|++||||||+.+.|+-.
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 5778999999999999999999853
No 374
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=95.16 E-value=0.018 Score=53.01 Aligned_cols=26 Identities=12% Similarity=0.132 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 26 QGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999999765
No 375
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.15 E-value=0.02 Score=50.65 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 57889999999999999999998764
No 376
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=95.14 E-value=0.019 Score=51.43 Aligned_cols=26 Identities=19% Similarity=0.106 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57789999999999999999998765
No 377
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=95.13 E-value=0.018 Score=58.65 Aligned_cols=35 Identities=17% Similarity=0.108 Sum_probs=31.1
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKE 219 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~ 219 (345)
....|+|+|+-.|||||++.+||.++. +.+||+|-
T Consensus 72 ~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDv 111 (398)
T COG1341 72 KVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADV 111 (398)
T ss_pred CCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCC
Confidence 456899999999999999999999886 68899985
No 378
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.13 E-value=0.018 Score=52.05 Aligned_cols=26 Identities=27% Similarity=0.211 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 57889999999999999999998654
No 379
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.13 E-value=0.023 Score=55.39 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=30.1
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh-----CCceeeCcHHHH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKELLE 222 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L-----g~~fID~D~lIE 222 (345)
.+.+|+|+|.+||||||+.+.|...+ +...+-.++-.|
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~E 173 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRE 173 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchh
Confidence 46799999999999999999999887 344555555555
No 380
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=95.12 E-value=0.019 Score=53.87 Aligned_cols=26 Identities=12% Similarity=0.017 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.|+-.+
T Consensus 38 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 38 KNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 57889999999999999999999765
No 381
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=95.12 E-value=0.02 Score=52.61 Aligned_cols=26 Identities=15% Similarity=0.069 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 32 AGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 57889999999999999999998654
No 382
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=95.11 E-value=0.019 Score=52.90 Aligned_cols=26 Identities=12% Similarity=0.045 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.||-.+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999999765
No 383
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.11 E-value=0.019 Score=53.20 Aligned_cols=26 Identities=15% Similarity=0.052 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.||-.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 57889999999999999999999765
No 384
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=95.11 E-value=0.047 Score=39.93 Aligned_cols=73 Identities=18% Similarity=0.316 Sum_probs=56.1
Q ss_pred EeecccceeeeeeecCcccccccceeEecCCceEEEEeeccCC------ccceeeeccccccccCCCceeeecccceeeh
Q 019172 83 FSDGSAEIELRLQLGSLEIQSSKDIFVDADGTCLTVRVNRSGS------FITLIETNQLFDKIKPTETIWYIDEDQLVIN 156 (345)
Q Consensus 83 ~~~~~~Ele~rl~l~~~~~~~sr~i~I~~~d~~L~~~vls~~~------~~tlIe~k~l~~~i~p~Etiw~~Dd~~~~~~ 156 (345)
|.|+.+++.+++.+|+.. ..++.|++.+.++.|+...... .....-.-.|+..+.|.++.|.+++..+.+.
T Consensus 1 ~~q~~~~v~i~i~~~~~~---~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~ 77 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVK---KEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEIT 77 (80)
T ss_pred CEEcCCEEEEEEECCCCC---HHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEE
Confidence 678889999999999933 6789999889999998876521 1222333558999999999999998887776
Q ss_pred cc
Q 019172 157 LK 158 (345)
Q Consensus 157 ~k 158 (345)
++
T Consensus 78 l~ 79 (80)
T cd00298 78 LP 79 (80)
T ss_pred Ec
Confidence 54
No 385
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.10 E-value=0.018 Score=53.45 Aligned_cols=26 Identities=15% Similarity=0.004 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.|+-.+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 30 EQEIVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 57889999999999999999999764
No 386
>PRK10908 cell division protein FtsE; Provisional
Probab=95.10 E-value=0.02 Score=52.16 Aligned_cols=26 Identities=19% Similarity=0.118 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999998665
No 387
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.09 E-value=0.019 Score=52.64 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.|+..+
T Consensus 5 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 5 KGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999999764
No 388
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.09 E-value=0.02 Score=53.13 Aligned_cols=26 Identities=12% Similarity=-0.011 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.|+-.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 28 KNQITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 57889999999999999999999644
No 389
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.09 E-value=0.02 Score=52.17 Aligned_cols=27 Identities=15% Similarity=0.094 Sum_probs=24.0
Q ss_pred cCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 184 l~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
..|..+.|+|++||||||+.+.||-.+
T Consensus 27 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 357789999999999999999999765
No 390
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=95.08 E-value=0.019 Score=53.32 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 25 AGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999998765
No 391
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.08 E-value=0.018 Score=52.23 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=24.6
Q ss_pred cCCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172 184 LKGTSIFLVGDSTEVNEKVALELAVGLG 211 (345)
Q Consensus 184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg 211 (345)
..+..+.|+|++||||||+.+.|+-.+.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 3578899999999999999999998754
No 392
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.07 E-value=0.021 Score=62.27 Aligned_cols=35 Identities=17% Similarity=-0.007 Sum_probs=31.4
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHH
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL 220 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~l 220 (345)
..+++|.|++|+||||+|+.+|..++..|+..+..
T Consensus 52 ~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~ 86 (725)
T PRK13341 52 VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAV 86 (725)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCcceeehhh
Confidence 45899999999999999999999999998887764
No 393
>PLN03025 replication factor C subunit; Provisional
Probab=95.07 E-value=0.023 Score=55.14 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=23.0
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhh
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
..+++|.|++|+||||+++.+|+.+
T Consensus 34 ~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 34 MPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999998
No 394
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.06 E-value=0.022 Score=53.31 Aligned_cols=26 Identities=12% Similarity=0.095 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.|+-.+
T Consensus 37 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 37 ENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 57889999999999999999999765
No 395
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.06 E-value=0.021 Score=50.77 Aligned_cols=27 Identities=15% Similarity=-0.039 Sum_probs=24.0
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLG 211 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg 211 (345)
.+..+.|+|++||||||+.+.|+-.+.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 577899999999999999999997753
No 396
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.06 E-value=0.021 Score=51.33 Aligned_cols=26 Identities=19% Similarity=0.125 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 57889999999999999999998765
No 397
>PF13479 AAA_24: AAA domain
Probab=95.05 E-value=0.031 Score=51.32 Aligned_cols=32 Identities=16% Similarity=0.081 Sum_probs=26.2
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHH
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKEL 220 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~l 220 (345)
+.+++|.|++|+||||+|..+ =+.-|||+|.=
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~---~k~l~id~E~g 34 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL---PKPLFIDTENG 34 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC---CCeEEEEeCCC
Confidence 568999999999999999988 33447888775
No 398
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.05 E-value=0.017 Score=62.00 Aligned_cols=35 Identities=9% Similarity=-0.034 Sum_probs=30.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhh-CCceeeCcHHH
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGL-GYTPLSTKELL 221 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~L-g~~fID~D~lI 221 (345)
.-|.|.|++||||||+++.|+..+ +...|.+|++.
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~ 101 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYN 101 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEccee
Confidence 457789999999999999999998 45688888874
No 399
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.05 E-value=0.019 Score=53.78 Aligned_cols=36 Identities=28% Similarity=0.405 Sum_probs=25.3
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcHHHH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKELLE 222 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~lIE 222 (345)
.+.+|+|+|++|+|||++|+.++.. +|-++.++.+|
T Consensus 21 G~h~lLl~GppGtGKTmlA~~l~~l--LP~l~~~e~le 56 (206)
T PF01078_consen 21 GGHHLLLIGPPGTGKTMLARRLPSL--LPPLTEEEALE 56 (206)
T ss_dssp CC--EEEES-CCCTHHHHHHHHHHC--S--CCEECCES
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHh--CCCCchHHHhh
Confidence 5789999999999999999999977 55555555443
No 400
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=95.05 E-value=0.02 Score=52.60 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=24.0
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLG 211 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg 211 (345)
.+..+.|+|++||||||+.+.|+-.+.
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 578899999999999999999997653
No 401
>PLN02796 D-glycerate 3-kinase
Probab=95.05 E-value=0.037 Score=55.63 Aligned_cols=35 Identities=11% Similarity=0.061 Sum_probs=28.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHHH
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKELL 221 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~lI 221 (345)
.-|.|+|.+||||||+++.|+..+. ...|..|++.
T Consensus 101 liIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 101 LVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 3488899999999999999999985 3456777764
No 402
>PRK13768 GTPase; Provisional
Probab=95.04 E-value=0.024 Score=53.77 Aligned_cols=34 Identities=12% Similarity=0.132 Sum_probs=27.4
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHH
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKEL 220 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~l 220 (345)
+.|+++|+.|+||||++..++..+. .-.+|.|.-
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 5689999999999999988887773 337788754
No 403
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.04 E-value=0.14 Score=52.54 Aligned_cols=117 Identities=16% Similarity=0.115 Sum_probs=64.6
Q ss_pred hhHhhHHHHHHhhhhh---cCCceEEEEcCCCCChHHHHHHHHHhhC-------CceeeCcHH----HHHHH--c--Cch
Q 019172 168 DIVESWESLTAGSMQL---LKGTSIFLVGDSTEVNEKVALELAVGLG-------YTPLSTKEL----LETFA--K--QTI 229 (345)
Q Consensus 168 ~~~~~~~~l~a~~~~~---l~~~~IvLIG~~GSGKSTVAk~LA~~Lg-------~~fID~D~l----IE~~~--g--~sI 229 (345)
...+.|..+.....+. .+++.|.|+||.|.||||--..||.++. ..+|-+|.+ +||.- + |.+
T Consensus 182 ~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~v 261 (407)
T COG1419 182 YFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGV 261 (407)
T ss_pred hHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCC
Confidence 3345565555544444 3578899999999999876555555555 789999998 34432 1 222
Q ss_pred hhhhhccChHHHHHHHHHHHHHHhcCCCEEEEcCCCCCcccCcHHHHHHHh------cCcEEEEEcChh
Q 019172 230 DSWMLAEGSDSVVNGECDVLESLSSHVRAVVATLGGQQGAAARADKWQHLY------AGFTVWLSQTEA 292 (345)
Q Consensus 230 ~ei~~~~Gee~FRelE~~vL~~L~~~~~~VIAtGGG~~~avlr~~~r~~L~------~G~VV~Ld~s~a 292 (345)
+-.+.. . ..+++. ++..+...+-+.|.|-|-. ...+.+...|+ ...-+||..+..
T Consensus 262 p~~vv~-~---~~el~~-ai~~l~~~d~ILVDTaGrs---~~D~~~i~el~~~~~~~~~i~~~Lvlsat 322 (407)
T COG1419 262 PLEVVY-S---PKELAE-AIEALRDCDVILVDTAGRS---QYDKEKIEELKELIDVSHSIEVYLVLSAT 322 (407)
T ss_pred ceEEec-C---HHHHHH-HHHHhhcCCEEEEeCCCCC---ccCHHHHHHHHHHHhccccceEEEEEecC
Confidence 211111 1 233332 2334444333444565532 45555555554 135677777654
No 404
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.03 E-value=0.021 Score=52.75 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 26 KGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 57889999999999999999998764
No 405
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=95.03 E-value=0.029 Score=54.84 Aligned_cols=106 Identities=11% Similarity=0.110 Sum_probs=61.1
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCC-------ceeeCcHHH------HHHH---cCchhhhhhccChHHHHHHHHHHH
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGY-------TPLSTKELL------ETFA---KQTIDSWMLAEGSDSVVNGECDVL 249 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~-------~fID~D~lI------E~~~---g~sI~ei~~~~Gee~FRelE~~vL 249 (345)
+.-|.|.|.+|+||||+++.|+..+.. ..|-+|-++ ++.. .+..++ .++-..|.+.-+++-
T Consensus 82 pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPe---SyD~~~ll~fl~~vK 158 (283)
T COG1072 82 PFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPE---SYDVAALLRFLSDVK 158 (283)
T ss_pred CEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCc---cccHHHHHHHHHHHh
Confidence 346888999999999999999998873 334455543 2211 011111 122223333222221
Q ss_pred HH----------------------HhcCCCEEEEcCCCCCcccCcHHHHHHHh--cCcEEEEEcChhhhchhh
Q 019172 250 ES----------------------LSSHVRAVVATLGGQQGAAARADKWQHLY--AGFTVWLSQTEAMGKLLR 298 (345)
Q Consensus 250 ~~----------------------L~~~~~~VIAtGGG~~~avlr~~~r~~L~--~G~VV~Ld~s~a~~~~~R 298 (345)
+. +....+.||.=|--+ ..+++.|..+. .++.||+|++.+.+ ..|
T Consensus 159 ~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nv---Lq~~~p~~~~sdffDfSIyvDa~~~~l-e~w 227 (283)
T COG1072 159 AGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNV---LQDGEPWLFLSDFFDFSIYVDADEELL-EER 227 (283)
T ss_pred cCCCccccccccccccccCCCceeecCCCCEEEEechhh---hcCCCccccccccceEEEEecCCHHHH-HHH
Confidence 10 111234677777652 45555666665 47899999999866 444
No 406
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.03 E-value=0.024 Score=59.22 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=24.1
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCC
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGY 212 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~ 212 (345)
+..++|.|++|+||||+++.+|+.+.+
T Consensus 36 ~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 36 GHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 345689999999999999999999975
No 407
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=95.03 E-value=0.029 Score=47.97 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=23.0
Q ss_pred hcCCceEEEEcCCCCChHHHHHHHHHh
Q 019172 183 LLKGTSIFLVGDSTEVNEKVALELAVG 209 (345)
Q Consensus 183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~ 209 (345)
..+...|.|+|++|+||||+.+.+...
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcC
Confidence 344678999999999999999999764
No 408
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.02 E-value=0.02 Score=54.62 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=26.3
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHh----hCCceeeCc
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVG----LGYTPLSTK 218 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~----Lg~~fID~D 218 (345)
+|..++|||++||||||+-|.|... -|--.+|++
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~ 64 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGE 64 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCE
Confidence 5788999999999999999988642 234456663
No 409
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.02 E-value=0.022 Score=50.06 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=23.9
Q ss_pred cCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 184 l~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
..+..+.|+|++||||||+.+.|+-.+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 357889999999999999999998765
No 410
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=95.02 E-value=0.021 Score=53.06 Aligned_cols=26 Identities=27% Similarity=0.212 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 28 PGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999999876
No 411
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=95.01 E-value=0.066 Score=49.33 Aligned_cols=29 Identities=21% Similarity=0.132 Sum_probs=25.2
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYT 213 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~ 213 (345)
.++-|++|||+|+||-||-.++...|.-.
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~ 32 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGR 32 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccC
Confidence 36779999999999999999998888644
No 412
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=95.01 E-value=0.021 Score=52.90 Aligned_cols=26 Identities=19% Similarity=0.033 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.|+-.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 26 KNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 57889999999999999999999665
No 413
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=95.01 E-value=0.021 Score=52.28 Aligned_cols=28 Identities=11% Similarity=0.131 Sum_probs=24.5
Q ss_pred cCCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172 184 LKGTSIFLVGDSTEVNEKVALELAVGLG 211 (345)
Q Consensus 184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg 211 (345)
..+..+.|+|++||||||+.+.|+-.+.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 3578899999999999999999997654
No 414
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.01 E-value=0.031 Score=58.49 Aligned_cols=28 Identities=29% Similarity=0.283 Sum_probs=25.4
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYT 213 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~ 213 (345)
...++|.|++|.||||+|+.+|+.|++.
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 4679999999999999999999999764
No 415
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=95.00 E-value=0.022 Score=52.55 Aligned_cols=26 Identities=19% Similarity=0.082 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 10 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 10 QGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999998665
No 416
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=94.99 E-value=0.02 Score=57.27 Aligned_cols=26 Identities=19% Similarity=0.081 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|.-++|+|++||||||+-+++|-..
T Consensus 28 ~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 28 DGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35679999999999999999999543
No 417
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.99 E-value=0.022 Score=51.85 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.|+-.+
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999998754
No 418
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.99 E-value=0.022 Score=52.05 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.||-.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 57789999999999999999998765
No 419
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.98 E-value=0.023 Score=51.31 Aligned_cols=27 Identities=19% Similarity=0.027 Sum_probs=24.0
Q ss_pred cCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 184 l~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
..+..+.|+|++||||||+.+.|+..+
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357889999999999999999998765
No 420
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.98 E-value=0.024 Score=49.95 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++|+||||+.+.|+-.+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 57889999999999999999999765
No 421
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.98 E-value=0.022 Score=52.93 Aligned_cols=26 Identities=15% Similarity=0.047 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.|+-.+
T Consensus 29 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 29 QNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 57889999999999999999999764
No 422
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.97 E-value=0.063 Score=58.47 Aligned_cols=103 Identities=14% Similarity=0.113 Sum_probs=60.8
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhC------------CceeeCcHHHHHH---------HcCchhhhhhcc-----Ch
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLG------------YTPLSTKELLETF---------AKQTIDSWMLAE-----GS 238 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg------------~~fID~D~lIE~~---------~g~sI~ei~~~~-----Ge 238 (345)
.|..|.|+|.+||||||++|.|...+. +.-+|.+.+.++. ..-++.|=+... .|
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e 577 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDE 577 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHH
Confidence 578999999999999999999987654 1222223322221 112444433221 12
Q ss_pred HHHHHHHH----HHHHHHhcCCCEEEEcCCCCCcccCcHHHHHHHh-------cCcEEEEEcCh
Q 019172 239 DSVVNGEC----DVLESLSSHVRAVVATLGGQQGAAARADKWQHLY-------AGFTVWLSQTE 291 (345)
Q Consensus 239 e~FRelE~----~vL~~L~~~~~~VIAtGGG~~~avlr~~~r~~L~-------~G~VV~Ld~s~ 291 (345)
+..+.+.. +.++++..+-+..|.-+|+ -+...-|+.|. +-.++.||-+.
T Consensus 578 ~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~----~LSGGQrQrlalARaLl~~P~ILlLDEaT 637 (709)
T COG2274 578 EIIEAAQLAGAHEFIENLPMGYDTPVGEGGA----NLSGGQRQRLALARALLSKPKILLLDEAT 637 (709)
T ss_pred HHHHHHHHhCcHHHHHhcccccccccccCCC----CCCHHHHHHHHHHHHhccCCCEEEEeCcc
Confidence 33333322 3345555556788877764 57777777553 35688888764
No 423
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=94.97 E-value=0.026 Score=51.19 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=30.6
Q ss_pred hcCCceEEEEcCCCCChHHHHHHHHHhh-----CCceeeCcHH
Q 019172 183 LLKGTSIFLVGDSTEVNEKVALELAVGL-----GYTPLSTKEL 220 (345)
Q Consensus 183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~L-----g~~fID~D~l 220 (345)
...+..+.|.|.+|+||||++..+|... ..-|+|+|..
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~ 58 (218)
T cd01394 16 VERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGL 58 (218)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 4457788999999999999999998765 2448988753
No 424
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.96 E-value=0.024 Score=49.74 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++|+||||+.+.|+-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999998654
No 425
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.95 E-value=0.022 Score=51.83 Aligned_cols=24 Identities=4% Similarity=0.072 Sum_probs=21.3
Q ss_pred eEEEEcCCCCChHHHHHHHHHhhC
Q 019172 188 SIFLVGDSTEVNEKVALELAVGLG 211 (345)
Q Consensus 188 ~IvLIG~~GSGKSTVAk~LA~~Lg 211 (345)
.|+|+|++||||||+.+.|+..+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 378999999999999999888775
No 426
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=94.95 E-value=0.023 Score=53.13 Aligned_cols=26 Identities=15% Similarity=0.100 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++|+||||+.+.|+-.+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 30 AGDVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999999875
No 427
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.94 E-value=0.023 Score=52.17 Aligned_cols=26 Identities=27% Similarity=0.184 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.|+-.+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 28 PGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 57889999999999999999999765
No 428
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=94.94 E-value=0.022 Score=53.82 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.|+-.+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 32 RGKITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 47789999999999999999999765
No 429
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.93 E-value=0.024 Score=52.73 Aligned_cols=26 Identities=12% Similarity=-0.100 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.||-.+
T Consensus 30 ~Ge~~~I~G~nGsGKSTLl~~i~G~~ 55 (251)
T PRK14244 30 KREVTAFIGPSGCGKSTFLRCFNRMN 55 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 57789999999999999999999664
No 430
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.93 E-value=0.024 Score=51.36 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=23.9
Q ss_pred cCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 184 l~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
..+..+.|+|++||||||+.+.|+-.+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 357889999999999999999998664
No 431
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=94.92 E-value=0.021 Score=53.76 Aligned_cols=26 Identities=15% Similarity=0.097 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.|+-.+
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 57889999999999999999999664
No 432
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.92 E-value=0.023 Score=52.78 Aligned_cols=26 Identities=12% Similarity=0.031 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 29 ENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 57889999999999999999999875
No 433
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.92 E-value=0.024 Score=52.57 Aligned_cols=26 Identities=15% Similarity=-0.072 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.|+-.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (249)
T PRK14253 28 ARQVTALIGPSGCGKSTLLRCLNRMN 53 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 57889999999999999999998654
No 434
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=94.92 E-value=0.023 Score=52.20 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.|+-.+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 24 RGERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999998764
No 435
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=94.91 E-value=0.023 Score=53.07 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=23.8
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.|+-.+
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 31 PGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999999765
No 436
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.91 E-value=0.024 Score=52.07 Aligned_cols=27 Identities=15% Similarity=0.067 Sum_probs=24.1
Q ss_pred cCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 184 l~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
..+..+.|+|++||||||+.+.|+-.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 357889999999999999999999665
No 437
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.91 E-value=0.021 Score=55.49 Aligned_cols=35 Identities=17% Similarity=0.082 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhC----CceeeCcH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLG----YTPLSTKE 219 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg----~~fID~D~ 219 (345)
++..+-|+|-+||||||+||.+...+. --++++++
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~ 76 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKD 76 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcc
Confidence 578899999999999999999988765 44566554
No 438
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.91 E-value=0.025 Score=51.30 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
++..+.|+|++||||||+.+.|+..+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999999865
No 439
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=94.90 E-value=0.025 Score=51.59 Aligned_cols=27 Identities=26% Similarity=0.108 Sum_probs=24.1
Q ss_pred cCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 184 l~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
..+..+.|+|++||||||+.+.|+-.+
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 357889999999999999999999765
No 440
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=94.90 E-value=0.024 Score=53.04 Aligned_cols=26 Identities=15% Similarity=-0.009 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.||-.+
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 29 PRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 57889999999999999999999754
No 441
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.89 E-value=0.025 Score=50.86 Aligned_cols=27 Identities=22% Similarity=0.191 Sum_probs=24.1
Q ss_pred cCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 184 l~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
-.+..+.|+|++||||||+.+.++-.+
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 357889999999999999999998765
No 442
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=94.89 E-value=0.024 Score=51.35 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=24.2
Q ss_pred cCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 184 l~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
-.+..+.|+|++||||||+.+.|+-.+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 22 ADGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 368899999999999999999998765
No 443
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.89 E-value=0.022 Score=55.01 Aligned_cols=37 Identities=22% Similarity=0.123 Sum_probs=30.7
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhC----CceeeCcHHH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLG----YTPLSTKELL 221 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg----~~fID~D~lI 221 (345)
++.-+.|+|+.||||||+-|.|+..|. --++|+.++.
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~ 67 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIA 67 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchh
Confidence 578899999999999999999999765 4677776653
No 444
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.89 E-value=0.024 Score=53.37 Aligned_cols=26 Identities=15% Similarity=-0.019 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.||-.+
T Consensus 46 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 46 KHAVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 57889999999999999999998753
No 445
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=94.88 E-value=0.024 Score=52.54 Aligned_cols=25 Identities=12% Similarity=0.038 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~ 209 (345)
.|..+.|+|++||||||+.+.|+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 30 PNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 5788999999999999999999864
No 446
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.88 E-value=0.024 Score=53.37 Aligned_cols=26 Identities=19% Similarity=0.046 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999998765
No 447
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=94.88 E-value=0.025 Score=51.51 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=24.2
Q ss_pred cCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 184 l~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
..+..+.|+|++||||||+.+.|+..+
T Consensus 32 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 32 NAGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357889999999999999999999775
No 448
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.88 E-value=0.025 Score=52.51 Aligned_cols=26 Identities=15% Similarity=-0.089 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|.+||||||+.+.|+-.+
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 29 EKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 57789999999999999999999665
No 449
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.88 E-value=0.024 Score=58.38 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=30.1
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhC-----CceeeCcHH
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLG-----YTPLSTKEL 220 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg-----~~fID~D~l 220 (345)
+..|.|+|+.|+||||++..||..|. ..++++|.+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~ 280 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS 280 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCc
Confidence 46899999999999999999997763 558899976
No 450
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.87 E-value=0.026 Score=50.04 Aligned_cols=26 Identities=19% Similarity=0.148 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
++..+.|+|++|+||||+.+.|+-.+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999998754
No 451
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.87 E-value=0.027 Score=49.57 Aligned_cols=28 Identities=18% Similarity=0.099 Sum_probs=24.6
Q ss_pred cCCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172 184 LKGTSIFLVGDSTEVNEKVALELAVGLG 211 (345)
Q Consensus 184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg 211 (345)
..+..+.|+|++|+||||+.+.|+-.+.
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3578899999999999999999987753
No 452
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.87 E-value=0.025 Score=52.56 Aligned_cols=26 Identities=15% Similarity=-0.041 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.|+-.+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (252)
T PRK14255 30 QNEITALIGPSGCGKSTYLRTLNRMN 55 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 57889999999999999999998754
No 453
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.87 E-value=0.025 Score=51.03 Aligned_cols=26 Identities=15% Similarity=0.026 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+..+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 26 AGELVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999999764
No 454
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.02 Score=57.68 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=26.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhhCCceeeC
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGLGYTPLST 217 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~ 217 (345)
+-|.|-||||.|||++.|+||+.|.....|.
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~ 208 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDR 208 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCc
Confidence 4588899999999999999999999775543
No 455
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.85 E-value=0.026 Score=51.17 Aligned_cols=27 Identities=19% Similarity=0.180 Sum_probs=23.6
Q ss_pred cCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 184 LKGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 184 l~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
..+..+.|+|++||||||+.+.||-.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 357889999999999999999998654
No 456
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=94.85 E-value=0.025 Score=53.60 Aligned_cols=26 Identities=23% Similarity=0.042 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.|+-.+
T Consensus 37 ~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 37 AGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 57889999999999999999999765
No 457
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.85 E-value=0.025 Score=52.52 Aligned_cols=25 Identities=8% Similarity=-0.019 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~ 209 (345)
.|..+.|+|++||||||+.+.||-.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 28 EKSVVAFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhh
Confidence 5788999999999999999999864
No 458
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=94.84 E-value=0.025 Score=52.35 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 46 ~Ge~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 46 KGEIVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 57889999999999999999999765
No 459
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.84 E-value=0.025 Score=54.49 Aligned_cols=27 Identities=19% Similarity=0.043 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLG 211 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg 211 (345)
.|.-+.|+|++||||||+-+.+|-...
T Consensus 28 ~GEfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 28 KGEFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 467799999999999999999986543
No 460
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.83 E-value=0.021 Score=58.75 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=24.9
Q ss_pred cCCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172 184 LKGTSIFLVGDSTEVNEKVALELAVGLG 211 (345)
Q Consensus 184 l~~~~IvLIG~~GSGKSTVAk~LA~~Lg 211 (345)
-+|..+.|+|++||||||+.+.|+..+.
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3689999999999999999999987663
No 461
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.82 E-value=0.025 Score=52.59 Aligned_cols=26 Identities=15% Similarity=-0.036 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.|+-.+
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14261 31 KNRVTALIGPSGCGKSTLLRCFNRMN 56 (253)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccc
Confidence 57889999999999999999999543
No 462
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.81 E-value=0.039 Score=55.57 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=25.1
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYT 213 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~ 213 (345)
+..+++.|++|+||||+|+.+|+.+.+.
T Consensus 38 ~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 38 GHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3458899999999999999999999884
No 463
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.80 E-value=0.027 Score=52.49 Aligned_cols=26 Identities=19% Similarity=0.017 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.|+-.+
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 32 KNSITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 57889999999999999999999765
No 464
>PRK04296 thymidine kinase; Provisional
Probab=94.78 E-value=0.025 Score=51.14 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhh
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
++-++++|+||+||||++..++.++
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHH
Confidence 3567889999999999999998877
No 465
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.78 E-value=0.028 Score=51.17 Aligned_cols=26 Identities=12% Similarity=-0.070 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhC
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLG 211 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg 211 (345)
..-|.|+|++||||||+.+.|...|.
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHh
Confidence 34578899999999999999998875
No 466
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.78 E-value=0.039 Score=57.76 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=25.3
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCc
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYT 213 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~ 213 (345)
+..+++.|++|+||||+|+.||+.|++.
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 38 HHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4568899999999999999999999875
No 467
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.78 E-value=0.026 Score=51.89 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 47 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 47 RGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999999654
No 468
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.07 Score=58.64 Aligned_cols=43 Identities=26% Similarity=0.289 Sum_probs=35.9
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCCceeeC--cHHHHHHHcCc
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGYTPLST--KELLETFAKQT 228 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~--D~lIE~~~g~s 228 (345)
...|+|-|+||+|||-+||++|..+.+.|+.. -+++.-+.|.+
T Consensus 705 RSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqS 749 (953)
T KOG0736|consen 705 RSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQS 749 (953)
T ss_pred cceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcch
Confidence 45699999999999999999999999999986 46666555543
No 469
>PRK08116 hypothetical protein; Validated
Probab=94.77 E-value=0.16 Score=48.68 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=30.3
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhh---CC--ceeeCcHHHHH
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGL---GY--TPLSTKELLET 223 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~L---g~--~fID~D~lIE~ 223 (345)
+..++|.|.+|+|||.++..+|..+ |. -|++.++++.+
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 3459999999999999999999986 43 46677776654
No 470
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.76 E-value=0.025 Score=53.43 Aligned_cols=26 Identities=19% Similarity=0.060 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.|+-.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 26 LSPVTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 57889999999999999999998765
No 471
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=94.76 E-value=0.028 Score=51.04 Aligned_cols=26 Identities=15% Similarity=0.219 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 26 TGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 57889999999999999999999664
No 472
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.75 E-value=0.023 Score=57.51 Aligned_cols=35 Identities=17% Similarity=0.144 Sum_probs=31.6
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhCCceeeCcH
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLGYTPLSTKE 219 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg~~fID~D~ 219 (345)
..+.|.|.||+|+|||-+|+++|++.|..||..+-
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~ 160 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSV 160 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcCCCcceeec
Confidence 35789999999999999999999999999998753
No 473
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=94.75 E-value=0.025 Score=52.20 Aligned_cols=26 Identities=15% Similarity=0.123 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+..+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (248)
T PRK09580 26 PGEVHAIMGPNGSGKSTLSATLAGRE 51 (248)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 57889999999999999999999874
No 474
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.75 E-value=0.026 Score=53.85 Aligned_cols=26 Identities=8% Similarity=0.017 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.|+-.+
T Consensus 36 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 36 KNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 57889999999999999999998765
No 475
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=94.74 E-value=0.026 Score=55.30 Aligned_cols=26 Identities=23% Similarity=0.139 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
+|..+.|+|.+||||||+++.|+..+
T Consensus 32 ~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 32 EGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccC
Confidence 57889999999999999999999876
No 476
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.74 E-value=0.028 Score=52.19 Aligned_cols=26 Identities=12% Similarity=-0.081 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.||-.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 27 QNKITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 57889999999999999999999754
No 477
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.74 E-value=0.027 Score=53.10 Aligned_cols=26 Identities=19% Similarity=0.080 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 34 ~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 34 KGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 57889999999999999999998764
No 478
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.73 E-value=0.028 Score=51.43 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.|+-.+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 26 AGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 57889999999999999999998665
No 479
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=94.73 E-value=0.027 Score=53.32 Aligned_cols=26 Identities=19% Similarity=0.066 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.|+-.+
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 32 GGSIAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999998765
No 480
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=94.73 E-value=0.025 Score=52.36 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVG 209 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~ 209 (345)
.|..+.|+|++||||||+.+.|+-.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 32 KGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCC
Confidence 5788999999999999999999874
No 481
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=94.73 E-value=0.024 Score=60.76 Aligned_cols=27 Identities=19% Similarity=0.209 Sum_probs=24.4
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLG 211 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg 211 (345)
+++.++|+||+|+||||+|+.||+.|.
T Consensus 102 ~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 102 KKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred CCceEEEecCCCCCchHHHHHHHHHHH
Confidence 456788999999999999999999885
No 482
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=94.73 E-value=0.029 Score=45.31 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCChHHHHHHHHHhh
Q 019172 187 TSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 187 ~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+|+|+|.+|+||||+...+...-
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 479999999999999999886543
No 483
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.73 E-value=0.027 Score=53.28 Aligned_cols=26 Identities=23% Similarity=0.128 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 38 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 63 (269)
T PRK14259 38 RGKVTALIGPSGCGKSTVLRSLNRMN 63 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 57889999999999999999999764
No 484
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.72 E-value=0.028 Score=51.77 Aligned_cols=26 Identities=8% Similarity=0.045 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++|+||||+.+.|+-.+
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 27 PGELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57789999999999999999999765
No 485
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.72 E-value=0.12 Score=56.18 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=24.5
Q ss_pred CceEEEEcCCCCChHHHHHHHHHhhCC
Q 019172 186 GTSIFLVGDSTEVNEKVALELAVGLGY 212 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~~Lg~ 212 (345)
...++|.|++|.||||+++.||+.|++
T Consensus 38 pHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 38 HHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 345788999999999999999999998
No 486
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.71 E-value=0.042 Score=53.38 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=23.0
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+.+++|.|++|+|||++++.+++.+
T Consensus 39 ~~~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 39 RPSNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999865
No 487
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.70 E-value=0.027 Score=53.35 Aligned_cols=26 Identities=12% Similarity=0.084 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 32 DGSYTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57789999999999999999998765
No 488
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=94.70 E-value=0.029 Score=52.98 Aligned_cols=26 Identities=19% Similarity=0.028 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.|+-.+
T Consensus 45 ~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 45 KNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 57889999999999999999999765
No 489
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.69 E-value=0.029 Score=52.86 Aligned_cols=26 Identities=12% Similarity=0.088 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.+|-.+
T Consensus 29 ~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 29 PGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999999654
No 490
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.68 E-value=0.029 Score=49.56 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=20.0
Q ss_pred EEEEcCCCCChHHHHHHHHHhh
Q 019172 189 IFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 189 IvLIG~~GSGKSTVAk~LA~~L 210 (345)
|.|+|++|+||||+...|...|
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999998875
No 491
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=94.68 E-value=0.029 Score=52.43 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|.+||||||+.+.|+-.+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 53 (254)
T PRK10418 28 RGRVLALVGGSGSGKSLTCAAALGIL 53 (254)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999998765
No 492
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.68 E-value=0.029 Score=53.13 Aligned_cols=26 Identities=12% Similarity=0.097 Sum_probs=23.7
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.|+-.+
T Consensus 49 ~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 49 EGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 57889999999999999999998766
No 493
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=94.68 E-value=0.028 Score=53.16 Aligned_cols=26 Identities=23% Similarity=0.127 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|++||||||+.+.|+-.+
T Consensus 37 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 62 (268)
T PRK10419 37 SGETVALLGRSGCGKSTLARLLVGLE 62 (268)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999998654
No 494
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.67 E-value=0.031 Score=50.37 Aligned_cols=28 Identities=25% Similarity=0.227 Sum_probs=24.4
Q ss_pred hcCCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 183 LLKGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 183 ~l~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
..++..+.|+|++|+||||+.+.|+-.+
T Consensus 31 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 31 VKAGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3468889999999999999999998654
No 495
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=94.67 E-value=0.03 Score=46.13 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=20.1
Q ss_pred CceEEEEcCCCCChHHHHHHHHH
Q 019172 186 GTSIFLVGDSTEVNEKVALELAV 208 (345)
Q Consensus 186 ~~~IvLIG~~GSGKSTVAk~LA~ 208 (345)
...|.++|.+|+||||+...|..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~ 25 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVG 25 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhC
Confidence 45799999999999999998864
No 496
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.66 E-value=0.036 Score=50.38 Aligned_cols=27 Identities=7% Similarity=-0.026 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhhC
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGLG 211 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~Lg 211 (345)
...+|.|+|+.||||||+-+.+++.++
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999999998865
No 497
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.66 E-value=0.045 Score=55.73 Aligned_cols=36 Identities=22% Similarity=0.345 Sum_probs=31.4
Q ss_pred hhcCCceEEEEcCCCCChHHHHHHHHHhhC--CceeeC
Q 019172 182 QLLKGTSIFLVGDSTEVNEKVALELAVGLG--YTPLST 217 (345)
Q Consensus 182 ~~l~~~~IvLIG~~GSGKSTVAk~LA~~Lg--~~fID~ 217 (345)
..+.|+.|++.|++|+|||.+|-.+|+.|| .||+.+
T Consensus 61 gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~i 98 (450)
T COG1224 61 GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAI 98 (450)
T ss_pred CcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceee
Confidence 456789999999999999999999999998 666544
No 498
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.66 E-value=0.03 Score=52.00 Aligned_cols=26 Identities=15% Similarity=-0.064 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.|..+.|+|.+||||||+.+.||-.+
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (251)
T PRK14270 29 ENKITALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 57889999999999999999999653
No 499
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.65 E-value=0.03 Score=50.44 Aligned_cols=26 Identities=19% Similarity=0.100 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
.+..+.|+|++||||||+.+.||-.+
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 57889999999999999999999776
No 500
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.65 E-value=0.033 Score=61.71 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=24.1
Q ss_pred CCceEEEEcCCCCChHHHHHHHHHhh
Q 019172 185 KGTSIFLVGDSTEVNEKVALELAVGL 210 (345)
Q Consensus 185 ~~~~IvLIG~~GSGKSTVAk~LA~~L 210 (345)
...+++|+|++|+|||++++.||+.+
T Consensus 198 ~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 198 TKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCceEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999998
Done!