Query 019173
Match_columns 345
No_of_seqs 130 out of 1491
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 07:17:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019173.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019173hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 3.2E-68 6.9E-73 495.7 32.8 306 9-318 1-310 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 2.1E-66 4.6E-71 474.6 31.6 315 8-327 11-335 (336)
3 TIGR01293 Kv_beta voltage-depe 100.0 2.5E-61 5.3E-66 452.3 31.6 300 11-316 1-317 (317)
4 PRK10625 tas putative aldo-ket 100.0 1.1E-60 2.4E-65 453.0 33.4 305 9-317 1-339 (346)
5 PRK09912 L-glyceraldehyde 3-ph 100.0 9.4E-61 2E-65 453.0 32.8 307 7-318 11-334 (346)
6 COG0656 ARA1 Aldo/keto reducta 100.0 7.2E-60 1.6E-64 424.1 26.2 257 9-319 3-266 (280)
7 PLN02587 L-galactose dehydroge 100.0 8.2E-59 1.8E-63 434.8 32.1 287 11-318 1-301 (314)
8 cd06660 Aldo_ket_red Aldo-keto 100.0 3.3E-57 7.1E-62 418.5 30.9 281 11-315 1-285 (285)
9 PRK10376 putative oxidoreducta 100.0 1.4E-56 3.1E-61 414.9 29.9 274 11-318 9-289 (290)
10 PF00248 Aldo_ket_red: Aldo/ke 100.0 3.2E-56 6.9E-61 411.5 25.8 276 23-316 1-282 (283)
11 KOG1577 Aldo/keto reductase fa 100.0 4.4E-55 9.4E-60 393.1 25.6 259 11-320 6-288 (300)
12 PRK11172 dkgB 2,5-diketo-D-glu 100.0 2.4E-54 5.2E-59 395.5 28.0 245 20-318 2-253 (267)
13 PRK14863 bifunctional regulato 100.0 4.5E-54 9.8E-59 397.7 24.7 270 18-316 2-281 (292)
14 COG4989 Predicted oxidoreducta 100.0 9.3E-54 2E-58 368.9 22.9 286 9-319 1-295 (298)
15 PRK11565 dkgA 2,5-diketo-D-glu 100.0 6.6E-53 1.4E-57 387.3 26.6 259 1-319 1-264 (275)
16 COG1453 Predicted oxidoreducta 100.0 4.7E-50 1E-54 364.1 25.0 271 9-316 1-284 (391)
17 KOG1576 Predicted oxidoreducta 100.0 4.8E-50 1E-54 348.3 22.5 291 8-315 21-319 (342)
18 KOG3023 Glutamate-cysteine lig 97.8 4.4E-05 9.5E-10 66.8 5.8 70 142-212 156-227 (285)
19 cd03319 L-Ala-DL-Glu_epimerase 91.4 7.5 0.00016 36.3 14.4 155 40-217 134-291 (316)
20 PRK07945 hypothetical protein; 86.2 8.7 0.00019 36.4 10.8 154 41-209 110-288 (335)
21 PRK08392 hypothetical protein; 85.2 17 0.00036 32.0 11.5 148 42-209 14-178 (215)
22 PRK08609 hypothetical protein; 85.2 17 0.00037 37.1 12.9 151 44-209 351-522 (570)
23 PRK10550 tRNA-dihydrouridine s 83.6 36 0.00077 31.9 13.5 132 40-184 73-223 (312)
24 cd04740 DHOD_1B_like Dihydroor 76.1 60 0.0013 29.8 12.4 152 40-206 100-286 (296)
25 cd03315 MLE_like Muconate lact 75.8 61 0.0013 29.2 14.7 158 40-218 85-244 (265)
26 PRK13958 N-(5'-phosphoribosyl) 75.0 8.8 0.00019 33.6 6.1 67 118-186 16-83 (207)
27 cd03316 MR_like Mandelate race 74.8 77 0.0017 29.9 14.1 154 40-213 139-299 (357)
28 cd03174 DRE_TIM_metallolyase D 74.1 20 0.00044 32.2 8.6 106 105-212 15-135 (265)
29 PRK07535 methyltetrahydrofolat 73.5 56 0.0012 29.7 11.2 133 107-269 23-157 (261)
30 cd00739 DHPS DHPS subgroup of 73.1 70 0.0015 29.0 11.7 101 106-212 21-127 (257)
31 PRK10558 alpha-dehydro-beta-de 72.6 31 0.00067 31.3 9.2 68 147-215 9-79 (256)
32 COG1748 LYS9 Saccharopine dehy 71.4 21 0.00046 34.5 8.2 82 40-138 77-159 (389)
33 cd00308 enolase_like Enolase-s 71.0 26 0.00057 30.9 8.4 87 127-217 120-208 (229)
34 PRK01222 N-(5'-phosphoribosyl) 68.3 13 0.00029 32.5 5.8 67 118-186 18-85 (210)
35 TIGR02370 pyl_corrinoid methyl 68.2 52 0.0011 28.5 9.4 145 40-206 10-164 (197)
36 PRK06361 hypothetical protein; 67.7 82 0.0018 27.3 16.5 187 42-274 10-201 (212)
37 PRK13796 GTPase YqeH; Provisio 66.1 1.1E+02 0.0024 29.3 12.0 120 39-170 54-176 (365)
38 PRK00164 moaA molybdenum cofac 65.7 1.2E+02 0.0026 28.4 13.2 149 39-210 49-228 (331)
39 PRK10128 2-keto-3-deoxy-L-rham 64.6 71 0.0015 29.2 9.9 67 148-215 9-78 (267)
40 COG1140 NarY Nitrate reductase 64.4 2.6 5.6E-05 39.9 0.5 54 154-207 263-317 (513)
41 PF00682 HMGL-like: HMGL-like 62.9 47 0.001 29.3 8.4 162 39-216 11-194 (237)
42 TIGR00735 hisF imidazoleglycer 62.8 1.2E+02 0.0025 27.3 11.1 92 114-208 159-253 (254)
43 cd00423 Pterin_binding Pterin 62.8 1.2E+02 0.0026 27.4 12.1 102 106-213 21-128 (258)
44 PF07021 MetW: Methionine bios 62.6 31 0.00067 29.9 6.6 103 114-218 63-172 (193)
45 PRK04452 acetyl-CoA decarbonyl 61.9 1.3E+02 0.0027 28.4 11.1 94 117-215 83-185 (319)
46 PRK00730 rnpA ribonuclease P; 61.8 43 0.00093 27.4 7.0 63 82-154 46-110 (138)
47 TIGR03239 GarL 2-dehydro-3-deo 61.6 70 0.0015 28.9 9.2 66 149-215 4-72 (249)
48 PF03102 NeuB: NeuB family; I 60.3 49 0.0011 29.8 7.9 109 39-168 53-183 (241)
49 PTZ00413 lipoate synthase; Pro 59.3 1.8E+02 0.0038 28.2 12.0 159 39-216 177-373 (398)
50 smart00642 Aamy Alpha-amylase 58.1 11 0.00024 31.7 3.3 22 194-215 72-93 (166)
51 COG4130 Predicted sugar epimer 57.8 54 0.0012 29.0 7.3 82 165-265 49-137 (272)
52 cd04731 HisF The cyclase subun 57.7 1.2E+02 0.0025 27.0 10.0 152 40-204 82-243 (243)
53 TIGR02311 HpaI 2,4-dihydroxyhe 57.5 94 0.002 28.0 9.3 65 148-213 3-70 (249)
54 COG2355 Zn-dependent dipeptida 57.1 73 0.0016 29.8 8.6 107 42-164 149-260 (313)
55 COG1801 Uncharacterized conser 55.0 1.7E+02 0.0036 26.7 10.5 108 23-138 4-115 (263)
56 PRK07259 dihydroorotate dehydr 52.1 1.9E+02 0.0042 26.6 10.8 152 40-206 102-289 (301)
57 COG3172 NadR Predicted ATPase/ 52.1 71 0.0015 27.0 6.8 97 54-155 79-185 (187)
58 PLN02389 biotin synthase 50.6 2.4E+02 0.0052 27.2 12.0 101 39-156 116-227 (379)
59 PF14871 GHL6: Hypothetical gl 50.0 21 0.00045 28.9 3.4 25 191-215 43-67 (132)
60 cd00405 PRAI Phosphoribosylant 49.4 1.1E+02 0.0024 26.3 8.2 46 118-170 68-113 (203)
61 cd00740 MeTr MeTr subgroup of 49.3 2E+02 0.0044 25.9 12.0 106 105-214 22-128 (252)
62 COG1151 6Fe-6S prismane cluste 49.0 91 0.002 31.5 8.2 99 109-209 360-464 (576)
63 TIGR01502 B_methylAsp_ase meth 48.7 2.1E+02 0.0045 28.0 10.6 86 128-214 265-357 (408)
64 PHA02128 hypothetical protein 48.0 53 0.0011 25.4 5.1 70 142-211 60-150 (151)
65 PLN02363 phosphoribosylanthran 47.2 58 0.0013 29.6 6.3 67 119-186 63-130 (256)
66 COG2874 FlaH Predicted ATPases 46.7 70 0.0015 28.4 6.3 147 12-173 19-178 (235)
67 COG2089 SpsE Sialic acid synth 46.6 2.6E+02 0.0056 26.4 11.0 119 39-176 87-225 (347)
68 COG0218 Predicted GTPase [Gene 46.4 2E+02 0.0044 25.1 10.2 116 21-154 75-198 (200)
69 PRK00208 thiG thiazole synthas 46.3 2.3E+02 0.0049 25.7 17.1 77 104-182 71-148 (250)
70 cd01301 rDP_like renal dipepti 46.3 1.3E+02 0.0029 28.1 8.7 107 42-164 154-263 (309)
71 cd07937 DRE_TIM_PC_TC_5S Pyruv 46.2 2.3E+02 0.0051 25.8 15.2 166 39-215 18-204 (275)
72 cd03318 MLE Muconate Lactonizi 46.2 78 0.0017 30.1 7.4 73 145-217 228-302 (365)
73 cd03322 rpsA The starvation se 45.9 1.1E+02 0.0023 29.2 8.2 70 145-214 203-274 (361)
74 COG1121 ZnuC ABC-type Mn/Zn tr 45.7 1.1E+02 0.0023 27.8 7.6 65 106-173 112-205 (254)
75 COG0635 HemN Coproporphyrinoge 45.6 1.5E+02 0.0032 29.0 9.2 108 22-167 149-276 (416)
76 PF13378 MR_MLE_C: Enolase C-t 45.3 26 0.00057 26.9 3.3 54 163-217 3-57 (111)
77 COG4464 CapC Capsular polysacc 45.2 1.3E+02 0.0027 26.8 7.5 33 35-68 14-46 (254)
78 PRK05692 hydroxymethylglutaryl 44.5 37 0.00081 31.3 4.7 103 105-210 22-138 (287)
79 cd03323 D-glucarate_dehydratas 44.3 3E+02 0.0066 26.6 14.5 154 40-217 168-324 (395)
80 COG0135 TrpF Phosphoribosylant 43.4 68 0.0015 28.2 5.8 82 119-209 18-102 (208)
81 TIGR02534 mucon_cyclo muconate 42.6 91 0.002 29.7 7.2 73 145-217 227-301 (368)
82 cd04728 ThiG Thiazole synthase 42.3 2.6E+02 0.0057 25.2 14.5 105 104-210 71-180 (248)
83 PRK13803 bifunctional phosphor 41.9 68 0.0015 33.1 6.5 69 119-187 19-88 (610)
84 PRK09427 bifunctional indole-3 41.7 64 0.0014 32.0 6.0 66 118-187 272-338 (454)
85 PLN02746 hydroxymethylglutaryl 41.5 81 0.0018 30.0 6.5 97 109-210 67-180 (347)
86 PF07302 AroM: AroM protein; 41.3 2.6E+02 0.0056 24.8 12.3 163 40-215 11-188 (221)
87 KOG0259 Tyrosine aminotransfer 41.2 3.5E+02 0.0075 26.3 13.2 161 20-214 62-241 (447)
88 cd03327 MR_like_2 Mandelate ra 41.1 1.2E+02 0.0026 28.6 7.7 81 128-212 198-280 (341)
89 cd03314 MAL Methylaspartate am 41.1 3.1E+02 0.0068 26.3 10.5 85 129-213 229-320 (369)
90 PRK15072 bifunctional D-altron 40.7 1.7E+02 0.0038 28.3 8.9 83 128-214 233-317 (404)
91 PRK07379 coproporphyrinogen II 40.6 1.5E+02 0.0033 28.7 8.4 59 106-166 179-254 (400)
92 COG0502 BioB Biotin synthase a 40.5 2.3E+02 0.005 26.9 9.2 134 39-192 84-234 (335)
93 PRK06424 transcription factor; 40.3 88 0.0019 25.7 5.7 80 194-274 22-108 (144)
94 TIGR01928 menC_lowGC/arch o-su 40.2 77 0.0017 29.7 6.2 87 128-218 199-287 (324)
95 PRK06740 histidinol-phosphatas 40.0 3.3E+02 0.0071 25.7 11.5 49 113-162 156-221 (331)
96 PRK05414 urocanate hydratase; 39.8 82 0.0018 31.5 6.3 140 16-176 93-254 (556)
97 TIGR01228 hutU urocanate hydra 39.5 81 0.0018 31.4 6.1 140 16-176 84-245 (545)
98 PRK10415 tRNA-dihydrouridine s 39.2 3.3E+02 0.0071 25.5 11.7 134 40-186 75-225 (321)
99 PRK05588 histidinol-phosphatas 39.2 2.8E+02 0.0061 24.7 9.8 147 41-210 15-184 (255)
100 PRK09856 fructoselysine 3-epim 39.1 74 0.0016 28.7 5.8 52 195-265 93-144 (275)
101 TIGR02026 BchE magnesium-proto 39.1 2.8E+02 0.0061 27.7 10.3 67 138-206 319-392 (497)
102 cd07943 DRE_TIM_HOA 4-hydroxy- 39.1 2.9E+02 0.0063 24.9 14.8 157 39-216 19-198 (263)
103 cd08556 GDPD Glycerophosphodie 38.9 1.9E+02 0.0041 24.0 8.0 23 40-62 11-33 (189)
104 PRK02083 imidazole glycerol ph 38.8 2.9E+02 0.0062 24.7 11.8 88 118-208 161-251 (253)
105 PF11242 DUF2774: Protein of u 37.8 45 0.00097 23.1 2.9 22 254-275 15-36 (63)
106 PRK06294 coproporphyrinogen II 37.7 1.9E+02 0.0041 27.7 8.5 60 105-166 166-242 (370)
107 cd07943 DRE_TIM_HOA 4-hydroxy- 37.7 2.1E+02 0.0044 25.9 8.4 105 105-211 18-131 (263)
108 PF00682 HMGL-like: HMGL-like 37.4 1.1E+02 0.0023 27.1 6.4 97 106-208 11-124 (237)
109 cd02070 corrinoid_protein_B12- 36.9 2.7E+02 0.0059 23.9 11.0 149 40-210 9-170 (201)
110 cd07944 DRE_TIM_HOA_like 4-hyd 36.5 2.5E+02 0.0054 25.5 8.8 105 104-211 15-128 (266)
111 PRK14461 ribosomal RNA large s 36.5 3.2E+02 0.007 26.3 9.6 87 129-216 231-352 (371)
112 PRK14017 galactonate dehydrata 36.4 2E+02 0.0043 27.6 8.5 70 145-214 217-288 (382)
113 PRK13361 molybdenum cofactor b 36.0 3.7E+02 0.008 25.1 13.4 95 39-156 45-154 (329)
114 COG2102 Predicted ATPases of P 35.9 84 0.0018 27.8 5.2 100 140-267 74-177 (223)
115 COG1387 HIS2 Histidinol phosph 35.8 3E+02 0.0064 24.5 9.0 155 43-209 17-190 (237)
116 PRK00507 deoxyribose-phosphate 35.5 2E+02 0.0044 25.4 7.7 75 39-125 133-208 (221)
117 PRK08195 4-hyroxy-2-oxovalerat 35.3 3.9E+02 0.0085 25.2 15.9 24 39-62 22-45 (337)
118 PF01207 Dus: Dihydrouridine s 35.2 1E+02 0.0023 28.7 6.2 133 40-184 64-212 (309)
119 cd03325 D-galactonate_dehydrat 35.1 2.3E+02 0.0049 26.8 8.6 81 128-212 203-285 (352)
120 PRK09613 thiH thiamine biosynt 35.0 4.7E+02 0.01 26.1 11.1 104 104-209 113-236 (469)
121 TIGR00126 deoC deoxyribose-pho 34.9 3.1E+02 0.0068 24.0 9.0 73 40-127 130-206 (211)
122 PF07994 NAD_binding_5: Myo-in 34.1 3.7E+02 0.008 25.0 9.4 148 108-293 131-283 (295)
123 PF00809 Pterin_bind: Pterin b 33.9 1.2E+02 0.0025 26.6 5.9 93 116-214 25-125 (210)
124 smart00052 EAL Putative diguan 33.5 2.1E+02 0.0046 24.6 7.7 99 109-211 99-209 (241)
125 TIGR00290 MJ0570_dom MJ0570-re 33.2 3.5E+02 0.0075 24.0 9.6 66 253-323 101-177 (223)
126 TIGR00048 radical SAM enzyme, 33.0 1.2E+02 0.0026 28.9 6.3 88 129-216 218-333 (355)
127 PRK09061 D-glutamate deacylase 33.0 3.9E+02 0.0084 26.8 10.2 113 43-163 170-283 (509)
128 PF01244 Peptidase_M19: Membra 32.8 60 0.0013 30.5 4.1 107 42-164 160-271 (320)
129 TIGR00190 thiC thiamine biosyn 32.7 2.9E+02 0.0063 26.9 8.5 143 40-209 75-220 (423)
130 TIGR00035 asp_race aspartate r 32.7 1.8E+02 0.004 25.6 7.1 69 106-175 14-95 (229)
131 PRK05660 HemN family oxidoredu 32.0 3.2E+02 0.0068 26.2 9.1 61 105-167 170-243 (378)
132 cd03174 DRE_TIM_metallolyase D 31.8 3.7E+02 0.0079 23.8 13.3 23 40-62 17-39 (265)
133 PF02679 ComA: (2R)-phospho-3- 31.6 1E+02 0.0023 27.7 5.2 98 112-210 24-131 (244)
134 PLN00191 enolase 31.3 3.5E+02 0.0075 26.9 9.3 96 106-210 295-393 (457)
135 TIGR02026 BchE magnesium-proto 31.1 5.5E+02 0.012 25.6 11.3 105 106-214 222-345 (497)
136 PRK05283 deoxyribose-phosphate 31.0 4.1E+02 0.0089 24.2 9.4 78 40-128 144-227 (257)
137 PRK00077 eno enolase; Provisio 30.8 4.1E+02 0.0088 26.0 9.7 96 106-210 261-361 (425)
138 COG2040 MHT1 Homocysteine/sele 30.7 4.4E+02 0.0096 24.4 10.9 168 40-213 41-241 (300)
139 TIGR01927 menC_gamma/gm+ o-suc 30.5 3E+02 0.0066 25.5 8.5 73 146-218 196-270 (307)
140 PRK09058 coproporphyrinogen II 30.5 2.1E+02 0.0045 28.3 7.7 29 105-134 226-254 (449)
141 PRK08446 coproporphyrinogen II 30.4 4.7E+02 0.01 24.7 10.0 60 105-166 161-230 (350)
142 PF10668 Phage_terminase: Phag 30.2 1E+02 0.0022 21.2 3.9 17 254-270 24-40 (60)
143 cd08583 PI-PLCc_GDPD_SF_unchar 30.1 3.8E+02 0.0083 23.5 8.9 22 40-61 13-34 (237)
144 cd01973 Nitrogenase_VFe_beta_l 30.0 5.5E+02 0.012 25.3 13.0 110 62-184 65-194 (454)
145 KOG0173 20S proteasome, regula 29.9 49 0.0011 29.7 2.8 23 34-56 178-200 (271)
146 TIGR03822 AblA_like_2 lysine-2 29.7 4.7E+02 0.01 24.4 12.9 109 107-218 120-240 (321)
147 TIGR00289 conserved hypothetic 29.7 4E+02 0.0086 23.6 9.1 91 195-323 75-176 (222)
148 PRK08195 4-hyroxy-2-oxovalerat 29.6 4E+02 0.0087 25.2 9.1 104 104-211 20-134 (337)
149 PF01175 Urocanase: Urocanase; 29.6 1.2E+02 0.0026 30.4 5.6 125 48-187 108-258 (546)
150 CHL00076 chlB photochlorophyll 29.3 6E+02 0.013 25.6 11.1 133 70-215 69-248 (513)
151 PRK09454 ugpQ cytoplasmic glyc 29.0 4.1E+02 0.009 23.6 13.6 22 40-61 20-41 (249)
152 TIGR01496 DHPS dihydropteroate 29.0 4.4E+02 0.0094 23.8 13.9 99 106-212 20-125 (257)
153 TIGR03217 4OH_2_O_val_ald 4-hy 29.0 5E+02 0.011 24.5 16.1 24 39-62 21-44 (333)
154 PF00356 LacI: Bacterial regul 29.0 82 0.0018 20.3 3.1 42 255-302 2-43 (46)
155 cd02930 DCR_FMN 2,4-dienoyl-Co 28.9 5E+02 0.011 24.5 13.4 97 83-184 202-305 (353)
156 COG3623 SgaU Putative L-xylulo 28.7 1E+02 0.0022 27.7 4.4 76 16-92 65-155 (287)
157 COG1751 Uncharacterized conser 28.5 2.5E+02 0.0054 23.5 6.4 87 130-217 2-95 (186)
158 cd08620 PI-PLCXDc_like_1 Catal 28.5 1.8E+02 0.004 26.8 6.4 15 48-62 36-50 (281)
159 PRK01313 rnpA ribonuclease P; 28.5 2.9E+02 0.0064 22.2 6.9 62 82-153 47-113 (129)
160 PF11020 DUF2610: Domain of un 28.4 1.3E+02 0.0029 22.0 4.2 28 246-273 48-75 (82)
161 COG1751 Uncharacterized conser 28.3 1.8E+02 0.004 24.2 5.6 72 40-124 12-84 (186)
162 PRK05628 coproporphyrinogen II 28.1 3.7E+02 0.0079 25.6 8.8 28 105-133 171-198 (375)
163 cd02810 DHOD_DHPD_FMN Dihydroo 27.9 4.6E+02 0.01 23.8 11.9 130 40-184 109-271 (289)
164 TIGR00737 nifR3_yhdG putative 27.9 4.9E+02 0.011 24.1 12.9 136 40-188 73-225 (319)
165 PF04476 DUF556: Protein of un 27.5 4.5E+02 0.0098 23.5 9.0 153 40-208 9-183 (235)
166 PRK15108 biotin synthase; Prov 27.4 5.4E+02 0.012 24.4 11.4 105 39-159 76-188 (345)
167 COG4943 Predicted signal trans 27.1 6E+02 0.013 25.5 9.8 125 70-210 340-476 (524)
168 PF10171 DUF2366: Uncharacteri 27.0 1.2E+02 0.0025 25.9 4.5 51 113-166 67-117 (173)
169 cd01948 EAL EAL domain. This d 26.8 4.1E+02 0.0088 22.8 8.4 101 108-211 97-208 (240)
170 TIGR00381 cdhD CO dehydrogenas 26.7 5.9E+02 0.013 24.7 12.1 105 109-218 128-253 (389)
171 PRK13352 thiamine biosynthesis 26.7 4.3E+02 0.0094 25.8 8.6 143 40-209 75-223 (431)
172 PRK03459 rnpA ribonuclease P; 26.6 3.3E+02 0.0071 21.6 6.8 63 82-154 48-114 (122)
173 TIGR03247 glucar-dehydr glucar 26.4 3E+02 0.0065 27.1 7.9 87 129-215 252-339 (441)
174 cd01974 Nitrogenase_MoFe_beta 26.2 6.2E+02 0.013 24.7 12.8 108 63-183 65-192 (435)
175 PRK12581 oxaloacetate decarbox 26.1 6.7E+02 0.014 25.0 13.4 113 40-167 103-216 (468)
176 PF07287 DUF1446: Protein of u 26.1 1.7E+02 0.0036 28.1 5.8 65 144-211 11-77 (362)
177 PRK13347 coproporphyrinogen II 26.1 2.7E+02 0.0059 27.4 7.6 61 105-167 215-291 (453)
178 PF14502 HTH_41: Helix-turn-he 26.0 62 0.0013 21.2 2.0 28 253-280 7-36 (48)
179 KOG0059 Lipid exporter ABCA1 a 25.6 3.4E+02 0.0075 29.4 8.8 71 106-178 670-769 (885)
180 PF01402 RHH_1: Ribbon-helix-h 25.6 1.1E+02 0.0023 18.4 3.1 21 250-270 9-29 (39)
181 PF00697 PRAI: N-(5'phosphorib 25.6 1.6E+02 0.0036 25.3 5.4 68 117-188 13-81 (197)
182 TIGR03822 AblA_like_2 lysine-2 25.5 5.6E+02 0.012 23.9 12.0 102 40-156 120-228 (321)
183 PRK13210 putative L-xylulose 5 25.3 2.8E+02 0.006 24.9 7.2 51 195-264 97-147 (284)
184 TIGR01278 DPOR_BchB light-inde 25.1 6.6E+02 0.014 25.2 10.3 101 70-184 69-194 (511)
185 cd02932 OYE_YqiM_FMN Old yello 25.0 5.8E+02 0.012 23.9 13.2 94 83-184 219-319 (336)
186 PRK12570 N-acetylmuramic acid- 24.9 5.6E+02 0.012 23.7 9.8 121 42-173 45-171 (296)
187 PRK07328 histidinol-phosphatas 24.8 5.1E+02 0.011 23.3 15.7 111 43-163 19-161 (269)
188 TIGR03849 arch_ComA phosphosul 24.6 1.5E+02 0.0033 26.6 4.9 97 112-210 11-118 (237)
189 PF13167 GTP-bdg_N: GTP-bindin 24.4 55 0.0012 24.9 1.9 67 249-317 7-80 (95)
190 TIGR03597 GTPase_YqeH ribosome 24.4 6.1E+02 0.013 24.1 9.5 119 39-169 48-169 (360)
191 COG2200 Rtn c-di-GMP phosphodi 24.3 4.9E+02 0.011 23.3 8.5 146 44-211 51-212 (256)
192 TIGR02090 LEU1_arch isopropylm 24.1 6.3E+02 0.014 24.1 9.8 25 39-63 19-43 (363)
193 PF09989 DUF2229: CoA enzyme a 24.0 2.3E+02 0.005 25.0 6.1 27 185-211 192-218 (221)
194 PF11590 DNAPolymera_Pol: DNA 24.0 70 0.0015 20.1 1.9 33 20-53 6-38 (41)
195 cd02801 DUS_like_FMN Dihydrour 23.8 4.8E+02 0.01 22.5 11.0 132 40-185 65-213 (231)
196 PRK00414 gmhA phosphoheptose i 23.7 4.6E+02 0.01 22.4 7.9 119 41-173 30-155 (192)
197 cd07939 DRE_TIM_NifV Streptomy 23.6 5.4E+02 0.012 23.0 9.0 98 112-216 22-134 (259)
198 TIGR01060 eno phosphopyruvate 23.5 6.7E+02 0.015 24.5 9.7 96 106-210 262-362 (425)
199 COG2949 SanA Uncharacterized m 23.4 5.2E+02 0.011 22.8 8.5 98 110-213 77-181 (235)
200 cd00945 Aldolase_Class_I Class 23.3 4.3E+02 0.0094 21.8 9.3 95 40-154 11-109 (201)
201 PRK12928 lipoyl synthase; Prov 23.1 5.5E+02 0.012 23.6 8.6 161 39-214 87-280 (290)
202 PRK14456 ribosomal RNA large s 22.9 3.5E+02 0.0075 26.0 7.4 88 129-216 237-353 (368)
203 KOG3085 Predicted hydrolase (H 22.8 3.9E+02 0.0085 24.0 7.2 61 141-204 115-180 (237)
204 PF01904 DUF72: Protein of unk 22.8 5.3E+02 0.012 22.7 10.1 135 48-210 12-147 (230)
205 COG0042 tRNA-dihydrouridine sy 22.7 6.4E+02 0.014 23.6 10.7 132 40-184 77-227 (323)
206 PRK14459 ribosomal RNA large s 22.5 5.7E+02 0.012 24.6 8.8 90 128-217 240-360 (373)
207 PF08013 Tagatose_6_P_K: Tagat 22.5 73 0.0016 31.0 2.7 46 17-63 78-130 (424)
208 cd03770 SR_TndX_transposase Se 22.5 1.5E+02 0.0032 23.8 4.3 51 112-162 54-105 (140)
209 cd01965 Nitrogenase_MoFe_beta_ 22.3 7.3E+02 0.016 24.1 12.8 108 64-184 62-188 (428)
210 COG2256 MGS1 ATPase related to 22.2 4.3E+02 0.0093 25.9 7.7 103 46-167 37-143 (436)
211 PTZ00081 enolase; Provisional 22.0 6.7E+02 0.014 24.7 9.4 96 106-210 281-381 (439)
212 cd05007 SIS_Etherase N-acetylm 21.9 5.9E+02 0.013 22.9 9.6 55 116-173 108-162 (257)
213 TIGR00126 deoC deoxyribose-pho 21.9 5.4E+02 0.012 22.5 10.0 100 39-154 15-114 (211)
214 PF01118 Semialdhyde_dh: Semia 21.8 1.2E+02 0.0026 23.6 3.5 27 40-66 75-101 (121)
215 COG5310 Homospermidine synthas 21.8 3.7E+02 0.0079 25.6 6.9 120 20-159 15-151 (481)
216 PRK12558 glutamyl-tRNA synthet 21.7 1.9E+02 0.0041 28.6 5.5 59 105-171 47-105 (445)
217 PRK12702 mannosyl-3-phosphogly 21.5 6.7E+02 0.015 23.4 9.3 149 41-210 20-174 (302)
218 PRK08208 coproporphyrinogen II 21.5 6.2E+02 0.013 24.7 9.1 61 105-167 204-275 (430)
219 PRK13602 putative ribosomal pr 21.2 2.9E+02 0.0062 20.1 5.1 56 148-212 3-60 (82)
220 PRK09389 (R)-citramalate synth 21.1 6.5E+02 0.014 25.2 9.2 25 39-63 21-45 (488)
221 PF05913 DUF871: Bacterial pro 21.1 3.3E+02 0.0071 26.1 6.8 210 40-299 12-235 (357)
222 cd03320 OSBS o-Succinylbenzoat 21.1 3.4E+02 0.0075 24.3 6.8 85 128-217 154-239 (263)
223 PRK01903 rnpA ribonuclease P; 20.9 4.5E+02 0.0097 21.2 6.7 47 107-153 66-128 (133)
224 cd07948 DRE_TIM_HCS Saccharomy 20.6 6.4E+02 0.014 22.8 12.5 115 40-173 20-146 (262)
225 cd03317 NAAAR N-acylamino acid 20.6 2.9E+02 0.0063 26.0 6.5 86 128-217 204-291 (354)
226 COG4555 NatA ABC-type Na+ tran 20.5 4.8E+02 0.01 23.2 7.0 71 104-176 103-202 (245)
227 PF13518 HTH_28: Helix-turn-he 20.5 1.2E+02 0.0025 19.3 2.7 22 254-276 14-35 (52)
228 TIGR01182 eda Entner-Doudoroff 20.3 5.2E+02 0.011 22.6 7.4 83 113-210 23-106 (204)
229 PRK14466 ribosomal RNA large s 20.3 7.5E+02 0.016 23.5 9.2 89 129-217 210-326 (345)
230 PRK09856 fructoselysine 3-epim 20.2 4.4E+02 0.0096 23.5 7.4 51 166-216 14-71 (275)
231 cd07944 DRE_TIM_HOA_like 4-hyd 20.2 6.5E+02 0.014 22.7 15.0 24 39-62 17-40 (266)
232 cd03329 MR_like_4 Mandelate ra 20.1 7.5E+02 0.016 23.4 14.4 151 40-212 143-299 (368)
233 PRK15052 D-tagatose-1,6-bispho 20.1 1.5E+02 0.0033 28.8 4.3 50 18-68 76-133 (421)
234 PRK02901 O-succinylbenzoate sy 20.0 7.3E+02 0.016 23.3 10.4 72 145-218 173-245 (327)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=3.2e-68 Score=495.73 Aligned_cols=306 Identities=42% Similarity=0.684 Sum_probs=273.7
Q ss_pred CceeecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhcCC-CCCeE
Q 019173 9 VPRVKLGTQGLEVSKLGFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLP-RENIQ 87 (345)
Q Consensus 9 m~~~~lg~tg~~vs~lg~G~~~~g~~~~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~-R~~~~ 87 (345)
|++++||++|++||+||||||.+|+.+.. .+.+++.++|++|+++||||||||+.||.|.||++||+||+... |++++
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~~~~-~~~~~a~~il~~A~d~Gin~~DTA~~Yg~g~sE~ilG~~l~~~~~Rd~vv 79 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGDTDD-EEEAEAIEILDAALDAGINFFDTADVYGDGRSEEILGEALKERGRRDKVV 79 (316)
T ss_pred CCceecCCCCceecceeeeccccCCCCCc-hhhhHHHHHHHHHHHcCCCEEECccccCCCchHHHHHHHHhccCCCCeEE
Confidence 68999999999999999999999874322 25667888999999999999999999999999999999999833 89999
Q ss_pred EEeccccccCC-ccccccCCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCc
Q 019173 88 VATKFGFAELG-LDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 166 (345)
Q Consensus 88 i~tK~~~~~~~-~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~ 166 (345)
|+||++....+ +.....+.++++|+++++.||+||||||||+||+||||..++.++++.+|.+|+++|+||+||+||++
T Consensus 80 IaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~~ 159 (316)
T COG0667 80 IATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNYS 159 (316)
T ss_pred EEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCC
Confidence 99999876532 21112568999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC-CCeeEEeccccccccccccchhhHHHhhCCeEEeecCCCccccCCCCCCCCCCCCCcccc-CCCCCccc
Q 019173 167 PDTIRRAHAV-HPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLGRGFFGGKAVVESVPPDSFLNF-LPRFTGEN 244 (345)
Q Consensus 167 ~~~l~~~~~~-~~~~~~q~~~nl~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~-~~~~~~~~ 244 (345)
.+++.++++. .+++++|.+||+++|+.+.+++++|+++||++++|+||++|+|+++.... + .+.+.. .+.+....
T Consensus 160 ~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~~~~gi~~~~~spla~G~Ltgk~~~~--~-~~~r~~~~~~~~~~~ 236 (316)
T COG0667 160 AEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLCREEGIGLLAYSPLASGLLTGKYLPG--P-EGSRASELPRFQREL 236 (316)
T ss_pred HHHHHHHHHhcCCceeecccCccccccchhHHHHHHHHcCCeEEEecCccccccCCCcCCC--c-chhhccccccchhhh
Confidence 9999999999 59999999999999877777999999999999999999999999995433 2 222222 25666777
Q ss_pred hhhhHHHHHHHHHHHHHcCCChHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcCCCCCHHHHHHHHhhCCC
Q 019173 245 LDRNRSIYFRIENLAKKYKCTSAQLALAWVLEQGDDVVPIPGTTKIKNLEDNIVSLTVKLTNKDLKEISDAVPT 318 (345)
Q Consensus 245 ~~~~~~~~~~l~~ia~~~g~s~~~~al~~~l~~~~v~~vivg~~~~~~l~~nl~a~~~~L~~~~~~~i~~~~~~ 318 (345)
.+...+++..+.++|+++|+|++|+||+|++++|.|++||+|+++++||++|+++++..|++++++.|++....
T Consensus 237 ~~~~~~~~~~l~~~a~~~g~t~aq~ALawvl~~~~v~~~I~Ga~~~~qL~en~~A~~~~L~~~~~~~l~~~~~~ 310 (316)
T COG0667 237 TERGLAILRALEELAKELGATPAQVALAWVLAQPGVTSPIVGASKAEQLEENLAALDIKLSEEELAALDEISAE 310 (316)
T ss_pred hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCceEeecCCCHHHHHHHHHHhcCCCCHHHHHHHHHHhhh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999988753
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=2.1e-66 Score=474.63 Aligned_cols=315 Identities=43% Similarity=0.690 Sum_probs=281.6
Q ss_pred CCceeecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhc--CCCCC
Q 019173 8 QVPRVKLGTQGLEVSKLGFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKM--LPREN 85 (345)
Q Consensus 8 ~m~~~~lg~tg~~vs~lg~G~~~~g~~~~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~--~~R~~ 85 (345)
.|+++++|++|++||++|||||.+.. |+...++++|.+++++|+++|+||||||++||+|.||.++|+++++ .+|++
T Consensus 11 ~~~~~~lg~~gl~Vs~lglG~m~~~~-~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~~~~E~llg~~i~~~~~~R~~ 89 (336)
T KOG1575|consen 11 GMLRRKLGNSGLKVSPLGLGCMGWTT-FGGQIDKEEAFELLDHAYEAGINFFDTAEVYGNGQSEELLGEFIKSRGWRRDK 89 (336)
T ss_pred cceeeeccCCCceecceeecceeeec-cccCCCHHHHHHHHHHHHHcCCCEEehhhhcCCcccHHHHHHHHHhcCCcCCc
Confidence 37899999999999999999985443 5555689999999999999999999999999999999999999998 67999
Q ss_pred eEEEeccccccCCccccccCCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCC
Q 019173 86 IQVATKFGFAELGLDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA 165 (345)
Q Consensus 86 ~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~~ 165 (345)
++|+||++... +.......++..+...++.|++|||++|||+||+||+|+..+.++++++|.+++++|+||+||+|++
T Consensus 90 vviaTK~~~~~--~~~~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiGlSe~ 167 (336)
T KOG1575|consen 90 VVIATKFGFDY--GGETPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWGLSEW 167 (336)
T ss_pred EEEEEEEeccC--CCcCCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEEeccC
Confidence 99999998765 1122456788999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHhcCCC--eeEEeccccccccccc-cchhhHHHhhCCeEEeecCCCccccCCC-CCCCCCCCCCccccCC---
Q 019173 166 SPDTIRRAHAVHP--ITAVQLEWSLWTRDIE-NEIVPLCRELGIGIVPYSPLGRGFFGGK-AVVESVPPDSFLNFLP--- 238 (345)
Q Consensus 166 ~~~~l~~~~~~~~--~~~~q~~~nl~~~~~~-~~~l~~~~~~gi~v~a~~pl~~G~L~~~-~~~~~~~~~~~~~~~~--- 238 (345)
+++++.++....+ +.++|++||++.|+.+ .++++.|++.||++++|+||++|+|+++ ...++.+.++.+...+
T Consensus 168 sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Ltgk~~~~e~~~~~~~~~~~~~~~ 247 (336)
T KOG1575|consen 168 SAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLTGKYKLGEDSRNGDKRFQFLGLS 247 (336)
T ss_pred CHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceeccCcccccccccccccccccccc
Confidence 9999999999876 9999999999999854 6799999999999999999999999998 4445555554332222
Q ss_pred -CCCccchhhhHHHHHHHHHHHHHcCCChHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcCCCCCHHHHHHHHhhCC
Q 019173 239 -RFTGENLDRNRSIYFRIENLAKKYKCTSAQLALAWVLEQGDDVVPIPGTTKIKNLEDNIVSLTVKLTNKDLKEISDAVP 317 (345)
Q Consensus 239 -~~~~~~~~~~~~~~~~l~~ia~~~g~s~~~~al~~~l~~~~v~~vivg~~~~~~l~~nl~a~~~~L~~~~~~~i~~~~~ 317 (345)
++... +..+..++++.++|+++|+|++|+||+|+++++.|++||||+++.+||++|++|+++.|+++++.+|+++.+
T Consensus 248 ~~~~~~--~~~~~~~~~~~~iA~k~g~T~~qlALawv~~~~~v~~pIpG~s~ve~l~eni~Al~~~Lt~e~~~~l~~~~~ 325 (336)
T KOG1575|consen 248 PQTEEG--DKQKPILEALSKIAEKHGCTVPQLALAWVLSNGKVSSPIPGASKIEQLKENIGALSVKLTPEEIKELEEIID 325 (336)
T ss_pred cccchh--hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCEEecCCCCcHHHHHHHHhhhhccCCHHHHHHHHHhhc
Confidence 22211 567889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCC
Q 019173 318 TEEVAGGRYP 327 (345)
Q Consensus 318 ~~~~~~~~~~ 327 (345)
.....+.+|+
T Consensus 326 ~~~~~~~~~~ 335 (336)
T KOG1575|consen 326 KILGFGPRSI 335 (336)
T ss_pred cccCcCCCCC
Confidence 9988888876
No 3
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=2.5e-61 Score=452.28 Aligned_cols=300 Identities=29% Similarity=0.461 Sum_probs=251.8
Q ss_pred eeecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhc--CCCCCeEE
Q 019173 11 RVKLGTQGLEVSKLGFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKM--LPRENIQV 88 (345)
Q Consensus 11 ~~~lg~tg~~vs~lg~G~~~~g~~~~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~--~~R~~~~i 88 (345)
+|+||++|++||+||||||.++ +...+.+++.+++++|+++|||+||||+.||.|.||++||++|+. .+|++++|
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~---g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~~~R~~~~i 77 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTF---GGQISDEMAEQLLTLAYENGINLFDTAEVYAAGKAEVVLGNILKKKGWRRSSYVI 77 (317)
T ss_pred CcccCCCCCeecceeecCCccC---CCCCCHHHHHHHHHHHHHcCCCeEECccccCCCccHHHHHHHHHhcCCCcccEEE
Confidence 4789999999999999999742 223478899999999999999999999999999999999999985 36999999
Q ss_pred EeccccccCCccccccCCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHH
Q 019173 89 ATKFGFAELGLDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPD 168 (345)
Q Consensus 89 ~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~ 168 (345)
+||++..... ....+.+++.+++++++||+||||||||+|++|||++..++++++++|++|+++|+||+||+|||+.+
T Consensus 78 aTK~~~~~~~--~~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~~ 155 (317)
T TIGR01293 78 TTKIFWGGKA--ETERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSSM 155 (317)
T ss_pred EeeeccCCCC--CCCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCHH
Confidence 9998642110 01134689999999999999999999999999999988889999999999999999999999999998
Q ss_pred HHHHHhcC------CCeeEEecccccccccc-ccchhhHHHhhCCeEEeecCCCccccCCCCCCCCCCCCCcccc--CCC
Q 019173 169 TIRRAHAV------HPITAVQLEWSLWTRDI-ENEIVPLCRELGIGIVPYSPLGRGFFGGKAVVESVPPDSFLNF--LPR 239 (345)
Q Consensus 169 ~l~~~~~~------~~~~~~q~~~nl~~~~~-~~~~l~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~--~~~ 239 (345)
++.++... .+++++|++||+++++. +.+++++|+++||++++|+||++|+|+++.... .+.+..+.. .++
T Consensus 156 ~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Ltg~~~~~-~~~~~~~~~~~~~~ 234 (317)
T TIGR01293 156 EIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVSGKYDSG-IPPYSRATLKGYQW 234 (317)
T ss_pred HHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccCCCCCCC-CCCcccccccccch
Confidence 88775432 46789999999999874 568999999999999999999999999985332 222221110 011
Q ss_pred CC----ccchhhhHHHHHHHHHHHHHcCCChHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcCC--CCCHHHHHHHH
Q 019173 240 FT----GENLDRNRSIYFRIENLAKKYKCTSAQLALAWVLEQGDDVVPIPGTTKIKNLEDNIVSLTV--KLTNKDLKEIS 313 (345)
Q Consensus 240 ~~----~~~~~~~~~~~~~l~~ia~~~g~s~~~~al~~~l~~~~v~~vivg~~~~~~l~~nl~a~~~--~L~~~~~~~i~ 313 (345)
+. ..+.......++.+.++|+++|+|++|+||+|++++|.|+++|+|+++++||++|++++++ +||+++++.|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~aqlal~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~~Ls~e~~~~l~ 314 (317)
T TIGR01293 235 LKDKILSEEGRRQQARLKDLQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASSAEQLMENLGSLQVLPKLSSSIIHEID 314 (317)
T ss_pred hhhhhcchhhHHHHHHHHHHHHHHHHHCcCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHHHhhccCCCCHHHHHHHH
Confidence 11 1122345677789999999999999999999999999999999999999999999999987 99999999999
Q ss_pred hhC
Q 019173 314 DAV 316 (345)
Q Consensus 314 ~~~ 316 (345)
+++
T Consensus 315 ~~~ 317 (317)
T TIGR01293 315 SIL 317 (317)
T ss_pred hhC
Confidence 763
No 4
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=1.1e-60 Score=453.01 Aligned_cols=305 Identities=27% Similarity=0.367 Sum_probs=254.3
Q ss_pred CceeecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeecCCCCC-------CCcHHHHHHHHHhc-
Q 019173 9 VPRVKLGTQGLEVSKLGFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTADKYG-------PYTNEILLGKALKM- 80 (345)
Q Consensus 9 m~~~~lg~tg~~vs~lg~G~~~~g~~~~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg-------~g~sE~~lG~~l~~- 80 (345)
|++++||+||+.||+||||||.+|+ ..+.+++.++++.|++.||||||||+.|| .|.||..||++|+.
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~----~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~ 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGE----QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCC----CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc
Confidence 6789999999999999999999874 23688999999999999999999999998 48899999999985
Q ss_pred CCCCCeEEEeccccccCC-ccc--cccCCCHHHHHHHHHHHHhhcCCCcccEEEeccCCC-----------------CCC
Q 019173 81 LPRENIQVATKFGFAELG-LDA--VIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDT-----------------SVP 140 (345)
Q Consensus 81 ~~R~~~~i~tK~~~~~~~-~~~--~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~-----------------~~~ 140 (345)
..|++++|+||++..... +.. .....+++.+++++++||+||||||||+|++|||+. ..+
T Consensus 77 ~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T PRK10625 77 GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVS 156 (346)
T ss_pred CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCC
Confidence 469999999999642210 000 012468999999999999999999999999999965 245
Q ss_pred HHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcC------CCeeEEeccccccccccccchhhHHHhhCCeEEeecCC
Q 019173 141 IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV------HPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPL 214 (345)
Q Consensus 141 ~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~------~~~~~~q~~~nl~~~~~~~~~l~~~~~~gi~v~a~~pl 214 (345)
++++|++|++|+++|+||+||+|||+.+++++++.. ..+.++|++||++++..+.+++++|+++||++++|+||
T Consensus 157 ~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~~~~gi~via~spL 236 (346)
T PRK10625 157 LLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCL 236 (346)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHHHHcCCeEEEeccc
Confidence 789999999999999999999999999888765431 35789999999999876678999999999999999999
Q ss_pred CccccCCCCCCCCCCCCCccccCCCCCccchhhhHHHHHHHHHHHHHcCCChHHHHHHHHHhCCCCeEeecCCCCHHHHH
Q 019173 215 GRGFFGGKAVVESVPPDSFLNFLPRFTGENLDRNRSIYFRIENLAKKYKCTSAQLALAWVLEQGDDVVPIPGTTKIKNLE 294 (345)
Q Consensus 215 ~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~~~al~~~l~~~~v~~vivg~~~~~~l~ 294 (345)
++|+|+++......+.+......++|.....+.....++++.++|+++|+|++|+||+|++++|.|+++|+|+++++||+
T Consensus 237 ~~G~Ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~aqval~w~l~~~~v~~~I~G~~~~~~l~ 316 (346)
T PRK10625 237 AFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDPAQMALAFVRRQPFVASTLLGATTMEQLK 316 (346)
T ss_pred cCeeccCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEeCCCCHHHHH
Confidence 99999987433222222110111112111224456778899999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCHHHHHHHHhhCC
Q 019173 295 DNIVSLTVKLTNKDLKEISDAVP 317 (345)
Q Consensus 295 ~nl~a~~~~L~~~~~~~i~~~~~ 317 (345)
+|+++++++|++++++.|+++.+
T Consensus 317 en~~a~~~~L~~~~~~~l~~~~~ 339 (346)
T PRK10625 317 TNIESLHLTLSEEVLAEIEAVHQ 339 (346)
T ss_pred HHHhhccCCCCHHHHHHHHHHHh
Confidence 99999999999999999999975
No 5
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=9.4e-61 Score=453.03 Aligned_cols=307 Identities=27% Similarity=0.496 Sum_probs=255.6
Q ss_pred CCCceeecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeecCCCCCC--CcHHHHHHHHHhc---C
Q 019173 7 LQVPRVKLGTQGLEVSKLGFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTADKYGP--YTNEILLGKALKM---L 81 (345)
Q Consensus 7 ~~m~~~~lg~tg~~vs~lg~G~~~~g~~~~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~--g~sE~~lG~~l~~---~ 81 (345)
..|++++||+||++||+||||||+. ||...+.+++.++|++|++.|||+||||+.||+ |.||+.||++|++ .
T Consensus 11 ~~m~~r~lg~tg~~vs~lglG~~~~---~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~~ 87 (346)
T PRK09912 11 GQMQYRYCGKSGLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAA 87 (346)
T ss_pred CCcceeecCCCCcccccccccCccc---cCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcccC
Confidence 4589999999999999999999972 333336778999999999999999999999995 8999999999986 2
Q ss_pred CCCCeEEEeccccccCCccccccCCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEe
Q 019173 82 PRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIG 161 (345)
Q Consensus 82 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iG 161 (345)
.|+++||+||+|....++ ......+++.+++++++||+||||||||+|++|+|+...++++++++|++|+++|+||+||
T Consensus 88 ~Rd~~~I~TK~g~~~~~~-~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~iG 166 (346)
T PRK09912 88 YRDELIISTKAGYDMWPG-PYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVG 166 (346)
T ss_pred CCCeEEEEEEecccCCCC-cCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEE
Confidence 599999999997531111 1112468999999999999999999999999999998888999999999999999999999
Q ss_pred cCCCcHHHHHHHhcC-----CCeeEEeccccccccccc-cchhhHHHhhCCeEEeecCCCccccCCCCCCCCCCCCCccc
Q 019173 162 LSEASPDTIRRAHAV-----HPITAVQLEWSLWTRDIE-NEIVPLCRELGIGIVPYSPLGRGFFGGKAVVESVPPDSFLN 235 (345)
Q Consensus 162 vS~~~~~~l~~~~~~-----~~~~~~q~~~nl~~~~~~-~~~l~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~ 235 (345)
||||++++++++.+. .+++++|++||++++..+ .+++++|+++||++++|+||++|+|+++.... .+.+....
T Consensus 167 vSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt~~~~~~-~~~~~~~~ 245 (346)
T PRK09912 167 ISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLTGKYLNG-IPQDSRMH 245 (346)
T ss_pred ecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCccccCCCCCC-CCCCcccc
Confidence 999999988765442 367899999999998654 47999999999999999999999999874322 12111100
Q ss_pred ----cCCCCCccch-hhhHHHHHHHHHHHHHcCCChHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcC-CCCCHHHH
Q 019173 236 ----FLPRFTGENL-DRNRSIYFRIENLAKKYKCTSAQLALAWVLEQGDDVVPIPGTTKIKNLEDNIVSLT-VKLTNKDL 309 (345)
Q Consensus 236 ----~~~~~~~~~~-~~~~~~~~~l~~ia~~~g~s~~~~al~~~l~~~~v~~vivg~~~~~~l~~nl~a~~-~~L~~~~~ 309 (345)
..+.|....+ +..+..++.+.++|+++|+|++|+||+|++++|.|++||+|+++++||++|+++++ ++|+++++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~AL~w~l~~~~v~~~i~G~~~~~ql~en~~a~~~~~L~~e~~ 325 (346)
T PRK09912 246 REGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSMAQMALSWLLKDERVTSVLIGASRAEQLEENVQALNNLTFSTEEL 325 (346)
T ss_pred ccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHhhhcCCCCCHHHH
Confidence 0011222211 34567778999999999999999999999999999999999999999999999984 79999999
Q ss_pred HHHHhhCCC
Q 019173 310 KEISDAVPT 318 (345)
Q Consensus 310 ~~i~~~~~~ 318 (345)
+.|+++++.
T Consensus 326 ~~l~~~~~~ 334 (346)
T PRK09912 326 AQIDQHIAD 334 (346)
T ss_pred HHHHHhhCc
Confidence 999999854
No 6
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=7.2e-60 Score=424.15 Aligned_cols=257 Identities=31% Similarity=0.517 Sum_probs=230.9
Q ss_pred CceeecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhc--CCCCCe
Q 019173 9 VPRVKLGTQGLEVSKLGFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKM--LPRENI 86 (345)
Q Consensus 9 m~~~~lg~tg~~vs~lg~G~~~~g~~~~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~--~~R~~~ 86 (345)
+.+.++ ++|..||.||||||++++ .+.+.+.+.+|++.|+|+||||..|| +|+.+|+++++ .+|+++
T Consensus 3 ~~~~~l-~~g~~iP~iGlGt~~~~~-------~~~~~~av~~Al~~Gyr~IDTA~~Yg---nE~~VG~aI~~s~v~Reel 71 (280)
T COG0656 3 KTKVTL-NNGVEIPAIGLGTWQIGD-------DEWAVRAVRAALELGYRLIDTAEIYG---NEEEVGEAIKESGVPREEL 71 (280)
T ss_pred Cceeec-CCCCcccCcceEeeecCC-------chhHHHHHHHHHHhCcceEecHhHhc---CHHHHHHHHHhcCCCHHHe
Confidence 345667 567779999999999764 23399999999999999999999999 89999999998 789999
Q ss_pred EEEeccccccCCccccccCCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCC--CCHHHHHHHHHHHHHcCCcceEecCC
Q 019173 87 QVATKFGFAELGLDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTS--VPIEETIGEMKKLVEEGKIKYIGLSE 164 (345)
Q Consensus 87 ~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~--~~~~~~~~~L~~L~~~G~ir~iGvS~ 164 (345)
||+||+|.. +.+.+.+.+++++||+|||+||+|+|+||||.+. ..++|+|++|++++++|+||+|||||
T Consensus 72 FittKvw~~---------~~~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVSN 142 (280)
T COG0656 72 FITTKVWPS---------DLGYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVSN 142 (280)
T ss_pred EEEeecCCc---------cCCcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEeeC
Confidence 999999964 3568899999999999999999999999999762 33789999999999999999999999
Q ss_pred CcHHHHHHHhcC--CCeeEEeccccccccccccchhhHHHhhCCeEEeecCCCccc-cCCCCCCCCCCCCCccccCCCCC
Q 019173 165 ASPDTIRRAHAV--HPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLGRGF-FGGKAVVESVPPDSFLNFLPRFT 241 (345)
Q Consensus 165 ~~~~~l~~~~~~--~~~~~~q~~~nl~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~-L~~~~~~~~~~~~~~~~~~~~~~ 241 (345)
|+.++|+++++. ..|+++|++||++.++. +++++|+++||.++|||||+.|. |.. .
T Consensus 143 F~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~--el~~~~~~~gI~v~AysPL~~g~~l~~---------------~---- 201 (280)
T COG0656 143 FGVEHLEELLSLAKVKPAVNQIEYHPYLRQP--ELLPFCQRHGIAVEAYSPLAKGGKLLD---------------N---- 201 (280)
T ss_pred CCHHHHHHHHHhcCCCCceEEEEeccCCCcH--HHHHHHHHcCCEEEEECCccccccccc---------------C----
Confidence 999999999877 45899999999999985 59999999999999999999653 221 1
Q ss_pred ccchhhhHHHHHHHHHHHHHcCCChHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcCCCCCHHHHHHHHhhCCCC
Q 019173 242 GENLDRNRSIYFRIENLAKKYKCTSAQLALAWVLEQGDDVVPIPGTTKIKNLEDNIVSLTVKLTNKDLKEISDAVPTE 319 (345)
Q Consensus 242 ~~~~~~~~~~~~~l~~ia~~~g~s~~~~al~~~l~~~~v~~vivg~~~~~~l~~nl~a~~~~L~~~~~~~i~~~~~~~ 319 (345)
+.+.+||++||.|++|++|+|++++|. +|||.+++++|+++|++++++.||++||+.|+++....
T Consensus 202 -----------~~l~~Ia~k~g~t~AQv~L~W~i~~gv--~~Ipks~~~~ri~eN~~~~~f~Ls~ed~~~i~~l~~~~ 266 (280)
T COG0656 202 -----------PVLAEIAKKYGKTPAQVALRWHIQRGV--IVIPKSTTPERIRENLAAFDFELSEEDMAAIDALDRGY 266 (280)
T ss_pred -----------hHHHHHHHHhCCCHHHHHHHHHHhCCc--EEecCCCCHHHHHHHHhhhcCCCCHHHHHHHHhhcccc
Confidence 289999999999999999999999995 89999999999999999999999999999999999764
No 7
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=8.2e-59 Score=434.78 Aligned_cols=287 Identities=29% Similarity=0.455 Sum_probs=246.4
Q ss_pred eeecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhc--CCCCCeEE
Q 019173 11 RVKLGTQGLEVSKLGFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKM--LPRENIQV 88 (345)
Q Consensus 11 ~~~lg~tg~~vs~lg~G~~~~g~~~~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~--~~R~~~~i 88 (345)
||+||+||++||.||||||++|+.|+. ++.+++.+++++|++.|||+||||+.||+|.||+.+|++|+. .+|+++||
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~~-~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~g~sE~~lG~al~~~~~~R~~v~I 79 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFGP-VSEEDAIASVREAFRLGINFFDTSPYYGGTLSEKVLGKALKALGIPREKYVV 79 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCCC-CCHHHHHHHHHHHHHcCCCEEECcCccCCCchHHHHHHHHHhCCCCcceEEE
Confidence 578999999999999999999876764 478999999999999999999999999999999999999987 47999999
Q ss_pred EeccccccCCccccccCCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCC---CCHHHHHHHHHHHHHcCCcceEecCCC
Q 019173 89 ATKFGFAELGLDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTS---VPIEETIGEMKKLVEEGKIKYIGLSEA 165 (345)
Q Consensus 89 ~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~---~~~~~~~~~L~~L~~~G~ir~iGvS~~ 165 (345)
+||++.... + .+++++.+++++++||+||||||||+|++|+|+.. ..++++|++|++|+++||||+||+|||
T Consensus 80 ~TK~~~~~~-~----~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~ 154 (314)
T PLN02587 80 STKCGRYGE-G----FDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITGL 154 (314)
T ss_pred EeccccCCC-C----CCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 999984321 1 35689999999999999999999999999999742 346789999999999999999999999
Q ss_pred cHHHHHHHhcC---C--CeeEEeccccccccccccchhhHHHhhCCeEEeecCCCccccCCCCCCCCCCCCCccccCCCC
Q 019173 166 SPDTIRRAHAV---H--PITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLGRGFFGGKAVVESVPPDSFLNFLPRF 240 (345)
Q Consensus 166 ~~~~l~~~~~~---~--~~~~~q~~~nl~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~ 240 (345)
+.+++..+... . .+..+|+.||+.++.. .+++++|+++||++++|+||++|+|+++..+. +
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ll~~~~~~gi~v~a~spl~~G~L~~~~~~~-------------~ 220 (314)
T PLN02587 155 PLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSL-EDLLPYLKSKGVGVISASPLAMGLLTENGPPE-------------W 220 (314)
T ss_pred CHHHHHHHHHhhhcCCCCeEEeccccCcchhhH-HHHHHHHHHcCceEEEechhhccccCCCCCCC-------------C
Confidence 99888766543 2 3444678999887643 58999999999999999999999999863111 1
Q ss_pred CccchhhhHHHHHHHHHHHHHcCCChHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcC----CCCCHHHHHHHHhhC
Q 019173 241 TGENLDRNRSIYFRIENLAKKYKCTSAQLALAWVLEQGDDVVPIPGTTKIKNLEDNIVSLT----VKLTNKDLKEISDAV 316 (345)
Q Consensus 241 ~~~~~~~~~~~~~~l~~ia~~~g~s~~~~al~~~l~~~~v~~vivg~~~~~~l~~nl~a~~----~~L~~~~~~~i~~~~ 316 (345)
. +..+.....++.+.++|+++++|++|+||+|++++|.|++||+|+++++||++|+++++ .+|+++++++|+++.
T Consensus 221 ~-~~~~~~~~~~~~l~~~a~~~~~s~aq~al~~~l~~~~v~~~i~G~~~~~~l~~nl~a~~~~~~~~l~~~~~~~l~~~~ 299 (314)
T PLN02587 221 H-PAPPELKSACAAAATHCKEKGKNISKLALQYSLSNKDISTTLVGMNSVQQVEENVAAATELETSGIDEELLSEVEAIL 299 (314)
T ss_pred C-CCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEEecCCCHHHHHHHHHHHhhcccCCCCHHHHHHHHHhh
Confidence 0 11234566778899999999999999999999999999999999999999999999976 379999999999998
Q ss_pred CC
Q 019173 317 PT 318 (345)
Q Consensus 317 ~~ 318 (345)
..
T Consensus 300 ~~ 301 (314)
T PLN02587 300 AP 301 (314)
T ss_pred cc
Confidence 53
No 8
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=3.3e-57 Score=418.53 Aligned_cols=281 Identities=41% Similarity=0.669 Sum_probs=250.5
Q ss_pred eeecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhcCC-CCCeEEE
Q 019173 11 RVKLGTQGLEVSKLGFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLP-RENIQVA 89 (345)
Q Consensus 11 ~~~lg~tg~~vs~lg~G~~~~g~~~~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~-R~~~~i~ 89 (345)
+++||+||++||+||||||.++..| .+.+++.+++++|++.|||+||||+.||+|.||+.+|++|+... |++++|+
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~---~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~g~sE~~lG~al~~~~~R~~~~i~ 77 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGY---VDEEEAAAAVRAALDAGINFIDTADVYGDGESEELLGEALKERGPREEVFIA 77 (285)
T ss_pred CcccCCCCceecCcceeccccCCCC---CCHHHHHHHHHHHHHcCCCeEECccccCCCCCHHHHHHHHhccCCcCcEEEE
Confidence 4789999999999999999988655 37899999999999999999999999999999999999999844 9999999
Q ss_pred eccccccCCccccccCCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCCC-HHHHHHHHHHHHHcCCcceEecCCCcHH
Q 019173 90 TKFGFAELGLDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVP-IEETIGEMKKLVEEGKIKYIGLSEASPD 168 (345)
Q Consensus 90 tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~-~~~~~~~L~~L~~~G~ir~iGvS~~~~~ 168 (345)
||++..... ..+.+++.+++++++||++||++|||+|+||+|+.... ..++|++|++++++|+||+||||+++.+
T Consensus 78 tK~~~~~~~----~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~~ 153 (285)
T cd06660 78 TKVGPRPGD----GRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSAE 153 (285)
T ss_pred eeecCCCCC----CCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCHH
Confidence 999865321 14578999999999999999999999999999988765 8899999999999999999999999999
Q ss_pred HHHHHhcC--CCeeEEeccccccccccccchhhHHHhhCCeEEeecCCCccccCCCCCCCCCCCCCccccCCCCCccchh
Q 019173 169 TIRRAHAV--HPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLGRGFFGGKAVVESVPPDSFLNFLPRFTGENLD 246 (345)
Q Consensus 169 ~l~~~~~~--~~~~~~q~~~nl~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (345)
.+.+++.. .+|+++|++||++++....+++++|+++||++++|+||++|.|+++........
T Consensus 154 ~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~~~~gi~v~~~~~l~~g~l~~~~~~~~~~~---------------- 217 (285)
T cd06660 154 QLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYCREHGIGVIAYSPLAGGLLTGKYLPGAPPP---------------- 217 (285)
T ss_pred HHHHHHHhhCCCceEEecccCcccCchHHHHHHHHHHcCcEEEEeccccCceecCCCCCCCCCC----------------
Confidence 99999888 799999999999999865579999999999999999999999986632111000
Q ss_pred hhHHHHHHHHHHHHHcCCChHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcCCCCCHHHHHHHHhh
Q 019173 247 RNRSIYFRIENLAKKYKCTSAQLALAWVLEQGDDVVPIPGTTKIKNLEDNIVSLTVKLTNKDLKEISDA 315 (345)
Q Consensus 247 ~~~~~~~~l~~ia~~~g~s~~~~al~~~l~~~~v~~vivg~~~~~~l~~nl~a~~~~L~~~~~~~i~~~ 315 (345)
.......+..++++++++++|+|++|++++|.+++||+|+++++||++|+++...+||+++++.|+++
T Consensus 218 -~~~~~~~~~~~~~~~~~s~~q~al~~~l~~p~~~~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~l~~~ 285 (285)
T cd06660 218 -EGDLLEALKEIAEKHGVTPAQVALRWLLQQPGVTSVIPGASSPERLEENLAALDFELSDEDLAALDAL 285 (285)
T ss_pred -hhhHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCeEEEeCCCCHHHHHHHHhhccCCCCHHHHHHHhhC
Confidence 01145689999999999999999999999999999999999999999999999999999999999863
No 9
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.4e-56 Score=414.91 Aligned_cols=274 Identities=26% Similarity=0.460 Sum_probs=237.5
Q ss_pred eeecCCCCccccccccccccCCC--CCCCCCCHHHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEE
Q 019173 11 RVKLGTQGLEVSKLGFGCMSLSG--GYNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLPRENIQV 88 (345)
Q Consensus 11 ~~~lg~tg~~vs~lg~G~~~~g~--~~~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~R~~~~i 88 (345)
+..++ |++||+||||||++|+ .||...+++++.+++++|++.|||+||||+.||+|.+|++||++++. .|++++|
T Consensus 9 ~~~l~--g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~~~sE~~lg~~l~~-~R~~~~i 85 (290)
T PRK10376 9 TFTLG--GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGPHVTNQLIREALHP-YPDDLTI 85 (290)
T ss_pred ceecC--CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCCCcHHHHHHHHHhc-CCCeEEE
Confidence 44563 9999999999999985 36655578899999999999999999999999999999999999976 6999999
Q ss_pred EeccccccCCccccccCCCHHHHHHHHHHHHhhcCCCcccEEEeccCCC-----CCCHHHHHHHHHHHHHcCCcceEecC
Q 019173 89 ATKFGFAELGLDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDT-----SVPIEETIGEMKKLVEEGKIKYIGLS 163 (345)
Q Consensus 89 ~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~-----~~~~~~~~~~L~~L~~~G~ir~iGvS 163 (345)
+||++....++.......+++.+++++++||+||||||||+|++|+++. ..+++++|++|++|+++||||+||+|
T Consensus 86 ~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gkir~iGvS 165 (290)
T PRK10376 86 VTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLVRHIGLS 165 (290)
T ss_pred EeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCceeEEEec
Confidence 9999754321111224578999999999999999999999999888521 23478999999999999999999999
Q ss_pred CCcHHHHHHHhcCCCeeEEeccccccccccccchhhHHHhhCCeEEeecCCCccccCCCCCCCCCCCCCccccCCCCCcc
Q 019173 164 EASPDTIRRAHAVHPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLGRGFFGGKAVVESVPPDSFLNFLPRFTGE 243 (345)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~q~~~nl~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~ 243 (345)
||+.++++++....+++++|++||++++.. .+++++|+++||++++|+||+++.. +
T Consensus 166 n~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~~~~~~~~~gi~v~a~~pL~g~~~--------------------~--- 221 (290)
T PRK10376 166 NVTPTQVAEARKIAEIVCVQNHYNLAHRAD-DALIDALARDGIAYVPFFPLGGFTP--------------------L--- 221 (290)
T ss_pred CCCHHHHHHHHhhCCeEEEecccCCCcCCh-HHHHHHHHHcCCEEEEeecCCCCCh--------------------h---
Confidence 999999999988889999999999999763 5799999999999999999974210 0
Q ss_pred chhhhHHHHHHHHHHHHHcCCChHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcCCCCCHHHHHHHHhhCCC
Q 019173 244 NLDRNRSIYFRIENLAKKYKCTSAQLALAWVLEQGDDVVPIPGTTKIKNLEDNIVSLTVKLTNKDLKEISDAVPT 318 (345)
Q Consensus 244 ~~~~~~~~~~~l~~ia~~~g~s~~~~al~~~l~~~~v~~vivg~~~~~~l~~nl~a~~~~L~~~~~~~i~~~~~~ 318 (345)
..+.+.++|+++++|++|+||+|++++|.+++||+|+++++||++|+++++++|++++++.|+++.++
T Consensus 222 -------~~~~l~~ia~~~~~t~aq~al~w~l~~~~~~~~i~G~~~~~~l~en~~a~~~~L~~e~~~~l~~~~~~ 289 (290)
T PRK10376 222 -------QSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENLAAAELVLSEEVLAELDGIARE 289 (290)
T ss_pred -------hhHHHHHHHHHhCCCHHHHHHHHHHhCCCCeeEeeCCCCHHHHHHHHhhccCCCCHHHHHHHHHHHhc
Confidence 02478999999999999999999999977778999999999999999999999999999999998653
No 10
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=3.2e-56 Score=411.54 Aligned_cols=276 Identities=36% Similarity=0.580 Sum_probs=234.2
Q ss_pred ccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhc--CCCCCeEEEeccccccCCcc
Q 019173 23 KLGFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKM--LPRENIQVATKFGFAELGLD 100 (345)
Q Consensus 23 ~lg~G~~~~g~~~~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~--~~R~~~~i~tK~~~~~~~~~ 100 (345)
+||||||++|+. ..+.+++.++++.|++.|||+||||+.||+|.||+.||++|+. .+|++++|+||+....
T Consensus 1 ~l~lG~~~~~~~---~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~~---- 73 (283)
T PF00248_consen 1 PLGLGTWRLGGE---RVSEEEAEAILRRALEAGINFFDTADSYGNGRSERILGRALRKSRVPRDDIFISTKVYGDG---- 73 (283)
T ss_dssp SBEEECTTBTTT---TSTHHHHHHHHHHHHHTT--EEEECGGGGGGTHHHHHHHHHHHTSSTGGGSEEEEEEESSS----
T ss_pred CEEEEccccCCC---CCCHHHHHHHHHHHHHcCCCeeccccccccccccccccccccccccccccccccccccccc----
Confidence 589999998753 4589999999999999999999999999999999999999998 7999999999992221
Q ss_pred ccccCCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCCC-HHHHHHHHHHHHHcCCcceEecCCCcHHHHHHH--hcCC
Q 019173 101 AVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVP-IEETIGEMKKLVEEGKIKYIGLSEASPDTIRRA--HAVH 177 (345)
Q Consensus 101 ~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~-~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~--~~~~ 177 (345)
......+++.+++++++||++||+||||+|++|+|+.... .+++|++|++|+++|+||+||||||+.+.++++ ....
T Consensus 74 ~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~~ 153 (283)
T PF00248_consen 74 KPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGSI 153 (283)
T ss_dssp STGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTSS
T ss_pred cccccccccccccccccccccccccchhccccccccccccccchhhhhhhhccccccccccccccccccccccccccccc
Confidence 2235788999999999999999999999999999999988 899999999999999999999999999999999 5557
Q ss_pred CeeEEeccccccccccccchhhHHHhhCCeEEeecCCCccccCCCCCCC-CCCCCCccccCCCCCccchhhhHHHHHHHH
Q 019173 178 PITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLGRGFFGGKAVVE-SVPPDSFLNFLPRFTGENLDRNRSIYFRIE 256 (345)
Q Consensus 178 ~~~~~q~~~nl~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 256 (345)
+|+++|++||++++....+++++|+++||++++|+||++|+|+++.... ..+..... .......+.+.
T Consensus 154 ~~~~~q~~~n~~~~~~~~~l~~~~~~~gi~v~a~~~l~~G~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~ 222 (283)
T PF00248_consen 154 PPDVVQINYNLLNRREEEGLLEFCREHGIGVIAYSPLAGGLLTGKYKSPPPPPSRASL-----------RDAQELADALR 222 (283)
T ss_dssp -ESEEEEE-BTTBHBGGHHHHHHHHHTT-EEEEESTTGGGCGGTTTTTTTTSTTTSGS-----------STHGGGHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccCccccccccCCCccccccc-----------chhhhhhhhhh
Confidence 8999999999997776789999999999999999999999999873322 11111100 01345667999
Q ss_pred HHHHHcCCChHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcCCCCCHHHHHHHHhhC
Q 019173 257 NLAKKYKCTSAQLALAWVLEQGDDVVPIPGTTKIKNLEDNIVSLTVKLTNKDLKEISDAV 316 (345)
Q Consensus 257 ~ia~~~g~s~~~~al~~~l~~~~v~~vivg~~~~~~l~~nl~a~~~~L~~~~~~~i~~~~ 316 (345)
++++++|+|++|+||+|++++|.+++||+|+++++||++|+++++.+||++++++|++++
T Consensus 223 ~~a~~~g~s~~q~al~~~l~~~~~~~~i~g~~~~~~l~en~~a~~~~L~~~~~~~i~~~~ 282 (283)
T PF00248_consen 223 ELAEEHGVSPAQLALRWVLSHPGVASVIVGASSPEHLEENLAALDFPLTEEELAEIDQIL 282 (283)
T ss_dssp HHHHHHTSSHHHHHHHHHHTSHTTEEEEEB-SSHHHHHHHHGGSSSG--HHHHHHHHTTH
T ss_pred hhhhhcccccchhhhhhhhhccccccccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999875
No 11
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=4.4e-55 Score=393.14 Aligned_cols=259 Identities=31% Similarity=0.484 Sum_probs=232.0
Q ss_pred eeecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhc------CCCC
Q 019173 11 RVKLGTQGLEVSKLGFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKM------LPRE 84 (345)
Q Consensus 11 ~~~lg~tg~~vs~lg~G~~~~g~~~~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~------~~R~ 84 (345)
..+| ++|..||.||||||+. ++.++.+.++.|++.|+||||||..|+ +|+-+|.+|++ .+|+
T Consensus 6 ~~~L-n~G~~mP~iGlGTw~~--------~~~~~~~aV~~Al~~GYRHIDtA~~Y~---NE~evG~aik~~i~~~~v~Re 73 (300)
T KOG1577|consen 6 TVKL-NNGFKMPIIGLGTWQS--------PPGQVAEAVKAAIKAGYRHIDTAHVYG---NEKEVGEAIKELLAEGGVKRE 73 (300)
T ss_pred eEec-cCCCccceeeeEeccc--------ChhhHHHHHHHHHHhCcceeechhhhC---ChHHHHHHHHHHhhhCCcchh
Confidence 5678 8999999999999982 678999999999999999999999999 79999999996 5999
Q ss_pred CeEEEeccccccCCccccccCCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCC----------------CCHHHHHHHH
Q 019173 85 NIQVATKFGFAELGLDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTS----------------VPIEETIGEM 148 (345)
Q Consensus 85 ~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~----------------~~~~~~~~~L 148 (345)
++||+||+|.. .+.++.++.++++||++||+||+|+|++|||-.. .+..++|++|
T Consensus 74 diFiTSKlw~~---------~~~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~am 144 (300)
T KOG1577|consen 74 DIFITSKLWPT---------DHAPELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKAM 144 (300)
T ss_pred hheeeeccCcc---------ccChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHHH
Confidence 99999999963 3678999999999999999999999999999553 3467899999
Q ss_pred HHHHHcCCcceEecCCCcHHHHHHHhcC--CCeeEEeccccccccccccchhhHHHhhCCeEEeecCCCccccCCCCCCC
Q 019173 149 KKLVEEGKIKYIGLSEASPDTIRRAHAV--HPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLGRGFFGGKAVVE 226 (345)
Q Consensus 149 ~~L~~~G~ir~iGvS~~~~~~l~~~~~~--~~~~~~q~~~nl~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~L~~~~~~~ 226 (345)
+++++.|+||+||||||+..+|+++++. .+|.++|++||++.++ .+++++|+++||.|.|||||+++-= + .
T Consensus 145 E~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q--~~L~~fCk~~~I~v~AYSpLg~~~~-~----~ 217 (300)
T KOG1577|consen 145 EKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQ--KKLVEFCKSKGIVVTAYSPLGSPGR-G----S 217 (300)
T ss_pred HHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcCh--HHHHHHHhhCCcEEEEecCCCCCCC-c----c
Confidence 9999999999999999999999999887 6789999999999987 5799999999999999999997521 0 0
Q ss_pred CCCCCCccccCCCCCccchhhhHHHHHHHHHHHHHcCCChHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcCCCCCH
Q 019173 227 SVPPDSFLNFLPRFTGENLDRNRSIYFRIENLAKKYKCTSAQLALAWVLEQGDDVVPIPGTTKIKNLEDNIVSLTVKLTN 306 (345)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~~~al~~~l~~~~v~~vivg~~~~~~l~~nl~a~~~~L~~ 306 (345)
++ +. -+.+.+||++|+.|++|++|||+++++. +|||.++|++++.+|++.+++.||+
T Consensus 218 ~l-----------l~----------~~~l~~iA~K~~kt~aQIlLrw~~q~g~--~vipKS~~~~Ri~eN~~vfdf~Lt~ 274 (300)
T KOG1577|consen 218 DL-----------LE----------DPVLKEIAKKYNKTPAQILLRWALQRGV--SVIPKSSNPERIKENFKVFDFELTE 274 (300)
T ss_pred cc-----------cc----------CHHHHHHHHHhCCCHHHHHHHHHHhCCc--EEEeccCCHHHHHHHHhhccccCCH
Confidence 00 00 1489999999999999999999999998 8999999999999999999999999
Q ss_pred HHHHHHHhhCCCCc
Q 019173 307 KDLKEISDAVPTEE 320 (345)
Q Consensus 307 ~~~~~i~~~~~~~~ 320 (345)
+|++.|+....+..
T Consensus 275 ed~~~i~~~~~~~r 288 (300)
T KOG1577|consen 275 EDMKKLDSLNSNER 288 (300)
T ss_pred HHHHHHhhccccce
Confidence 99999998876543
No 12
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=2.4e-54 Score=395.49 Aligned_cols=245 Identities=27% Similarity=0.428 Sum_probs=220.6
Q ss_pred cccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhc--CCCCCeEEEeccccccC
Q 019173 20 EVSKLGFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKM--LPRENIQVATKFGFAEL 97 (345)
Q Consensus 20 ~vs~lg~G~~~~g~~~~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~--~~R~~~~i~tK~~~~~~ 97 (345)
+||.||||||+++ .+++.+++++|++.|||+||||+.|| +|..+|++|++ .+|+++||+||++..
T Consensus 2 ~vs~lglGt~~~~--------~~~~~~~i~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~~~~~R~~v~i~TK~~~~-- 68 (267)
T PRK11172 2 SIPAFGLGTFRLK--------DQVVIDSVKTALELGYRAIDTAQIYD---NEAAVGQAIAESGVPRDELFITTKIWID-- 68 (267)
T ss_pred CCCCEeeEccccC--------hHHHHHHHHHHHHcCCCEEEccchhC---CHHHHHHHHHHcCCChhHeEEEEEeCCC--
Confidence 6899999999853 46799999999999999999999999 79999999985 469999999998632
Q ss_pred CccccccCCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCC--CCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhc
Q 019173 98 GLDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTS--VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHA 175 (345)
Q Consensus 98 ~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~--~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~ 175 (345)
..+++.+++++++||+|||+||||+|++|+|++. .+.+++|++|++|+++||||+||||||+.++++++++
T Consensus 69 -------~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~~ 141 (267)
T PRK11172 69 -------NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAIA 141 (267)
T ss_pred -------CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHHH
Confidence 3578999999999999999999999999999763 4678999999999999999999999999999988876
Q ss_pred C---CCeeEEeccccccccccccchhhHHHhhCCeEEeecCCCccccCCCCCCCCCCCCCccccCCCCCccchhhhHHHH
Q 019173 176 V---HPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLGRGFFGGKAVVESVPPDSFLNFLPRFTGENLDRNRSIY 252 (345)
Q Consensus 176 ~---~~~~~~q~~~nl~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (345)
. .+++++|++||+++++ .+++++|+++||+|++|+||++|.+...
T Consensus 142 ~~~~~~~~~~Q~~~~~~~~~--~~ll~~~~~~gi~v~a~spl~~G~~~~~------------------------------ 189 (267)
T PRK11172 142 AVGAENIATNQIELSPYLQN--RKVVAFAKEHGIHVTSYMTLAYGKVLKD------------------------------ 189 (267)
T ss_pred hcCCCCCeEEeeecCCCCCc--HHHHHHHHHCCCEEEEECCCCCCcccCC------------------------------
Confidence 4 3689999999999875 6899999999999999999998854310
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcCCCCCHHHHHHHHhhCCC
Q 019173 253 FRIENLAKKYKCTSAQLALAWVLEQGDDVVPIPGTTKIKNLEDNIVSLTVKLTNKDLKEISDAVPT 318 (345)
Q Consensus 253 ~~l~~ia~~~g~s~~~~al~~~l~~~~v~~vivg~~~~~~l~~nl~a~~~~L~~~~~~~i~~~~~~ 318 (345)
+.+.++|+++|+|++|+||+|++++|. +||+|+++++||++|+++++++||+++++.|+++.++
T Consensus 190 ~~l~~~a~~~~~s~aqval~w~l~~~~--~~i~g~~~~~~l~~n~~~~~~~L~~~~~~~i~~~~~~ 253 (267)
T PRK11172 190 PVIARIAAKHNATPAQVILAWAMQLGY--SVIPSSTKRENLASNLLAQDLQLDAEDMAAIAALDRN 253 (267)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCC--EeecCCCCHHHHHHHHhhcCCCcCHHHHHHHhhhccC
Confidence 268999999999999999999999985 6999999999999999999999999999999999864
No 13
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=4.5e-54 Score=397.71 Aligned_cols=270 Identities=18% Similarity=0.232 Sum_probs=229.1
Q ss_pred CccccccccccccCCCC-------CCCCCCHHHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEe
Q 019173 18 GLEVSKLGFGCMSLSGG-------YNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLPRENIQVAT 90 (345)
Q Consensus 18 g~~vs~lg~G~~~~g~~-------~~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~R~~~~i~t 90 (345)
+++||+||||||++|+. |+. ++.+++.++|++|+++||||||||+.||. ||..+|++|+...+++++|+|
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~-~~~~ea~~~l~~A~~~Gin~~DTA~~YG~--SE~~lG~al~~~~~~~~~i~t 78 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGR-TPEAEARDILNIAARAGLSVLDASGLFGR--AETVLGQLIPRPVPFRVTLST 78 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCC-CCHHHHHHHHHHHHHcCCCEEecchhhhh--HHHHHhhhhccCCceEeeccc
Confidence 57899999999999863 444 48999999999999999999999999974 999999999762346788888
Q ss_pred ccccccCCccccccCCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCC-CCH-HHHHHHHHHHHHcCCcceEecCCCcHH
Q 019173 91 KFGFAELGLDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTS-VPI-EETIGEMKKLVEEGKIKYIGLSEASPD 168 (345)
Q Consensus 91 K~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~-~~~-~~~~~~L~~L~~~G~ir~iGvS~~~~~ 168 (345)
|.. ..+++.+++++++||+||||||||+|++|+|+.. .+. +++|++|++|+++||||+||||||+++
T Consensus 79 k~~-----------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~ 147 (292)
T PRK14863 79 VRA-----------DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASD 147 (292)
T ss_pred ccc-----------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHH
Confidence 842 2358899999999999999999999999999763 333 678999999999999999999999999
Q ss_pred HHHHHhcCCCeeEEeccccccccccc-cchhhHHHhhCCeEEeecCCCccccCCCCCCCCCCCCCccccCCCCCccchhh
Q 019173 169 TIRRAHAVHPITAVQLEWSLWTRDIE-NEIVPLCRELGIGIVPYSPLGRGFFGGKAVVESVPPDSFLNFLPRFTGENLDR 247 (345)
Q Consensus 169 ~l~~~~~~~~~~~~q~~~nl~~~~~~-~~~l~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (345)
++..+....+|+++|++||+++++.+ .+++++|+++||++++|+||++|+|++... ..+. .+..
T Consensus 148 ~~~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~~~~~--~~~~-------------~~~~ 212 (292)
T PRK14863 148 DPVGVARRFKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLFLPPD--RVPA-------------QLKG 212 (292)
T ss_pred HHHHHHhcCCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCccccCCcc--cCcc-------------chhh
Confidence 88888777889999999999998754 479999999999999999999999975311 1110 0112
Q ss_pred hHHHHHHHHHHHHHcCCChHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcCCCCCHHHHHHHHhhC
Q 019173 248 NRSIYFRIENLAKKYKCTSAQLALAWVLEQGDDVVPIPGTTKIKNLEDNIVSLTVKLTNKDLKEISDAV 316 (345)
Q Consensus 248 ~~~~~~~l~~ia~~~g~s~~~~al~~~l~~~~v~~vivg~~~~~~l~~nl~a~~~~L~~~~~~~i~~~~ 316 (345)
....+..+.++++++++|++|+||+|++++|.|+++|+|+++++||++|+++...+++++.+++|..-.
T Consensus 213 ~~~~~~~~~~~~~~~~~s~aqlalaw~l~~p~v~~~I~G~~~~~ql~~n~~a~~~~~~~~~~~~l~~~~ 281 (292)
T PRK14863 213 ASGRLSRVRRMIAEGRSDPLQAALGFALSRPEGSAVLVGVNSAAELSAVVAAASSPPPDLDWDDMAIDD 281 (292)
T ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHHHhcCCCccchhhccCCh
Confidence 234556788888889999999999999999999999999999999999999999899998887765443
No 14
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=9.3e-54 Score=368.87 Aligned_cols=286 Identities=29% Similarity=0.443 Sum_probs=255.7
Q ss_pred CceeecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhc--CCCCCe
Q 019173 9 VPRVKLGTQGLEVSKLGFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKM--LPRENI 86 (345)
Q Consensus 9 m~~~~lg~tg~~vs~lg~G~~~~g~~~~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~--~~R~~~ 86 (345)
|++.++|+.|+.+|+|.+|+|++.. |+ ++..++...++.|++.||++||.|+.||+++.|.++|.+|+. ..|+++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d-~~--~~~~e~~~~Ie~~le~Gitt~DhADIYGgy~cE~~fg~aL~l~p~lReki 77 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND-WN--MSARELLSFIETALELGITTFDHADIYGGYQCEALFGEALKLAPGLREKI 77 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh-cc--CCHHHHHHHHHHHHHcCcccchhhhhcCCccHHHHHHHHHhcChhhhhhe
Confidence 6788999999999999999999975 44 367899999999999999999999999999999999999987 689999
Q ss_pred EEEeccccccCCc---cccccCCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecC
Q 019173 87 QVATKFGFAELGL---DAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS 163 (345)
Q Consensus 87 ~i~tK~~~~~~~~---~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS 163 (345)
.|+||||...... ....+++|+++|..||++||+||+|||+|+++||+||+..+.+|+.+++..|+++||||++|||
T Consensus 78 eivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGVS 157 (298)
T COG4989 78 EIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGVS 157 (298)
T ss_pred EeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeecC
Confidence 9999999764322 1224689999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHhcC--CCeeEEecccccccccc-ccchhhHHHhhCCeEEeecCCCccccCCCCCCCCCCCCCccccCCCC
Q 019173 164 EASPDTIRRAHAV--HPITAVQLEWSLWTRDI-ENEIVPLCRELGIGIVPYSPLGRGFFGGKAVVESVPPDSFLNFLPRF 240 (345)
Q Consensus 164 ~~~~~~l~~~~~~--~~~~~~q~~~nl~~~~~-~~~~l~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~ 240 (345)
||++.+++-+... .+++.+|++.|+++... ..+.+++|+++.|.+++||||++|.++...
T Consensus 158 Nf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F~g~----------------- 220 (298)
T COG4989 158 NFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLFLGD----------------- 220 (298)
T ss_pred CCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccccCC-----------------
Confidence 9999999887776 45789999999999763 378999999999999999999998555211
Q ss_pred CccchhhhHHHHHHHHHHHHHcC-CChHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcCCCCCHHHHHHHHhhCCCC
Q 019173 241 TGENLDRNRSIYFRIENLAKKYK-CTSAQLALAWVLEQGDDVVPIPGTTKIKNLEDNIVSLTVKLTNKDLKEISDAVPTE 319 (345)
Q Consensus 241 ~~~~~~~~~~~~~~l~~ia~~~g-~s~~~~al~~~l~~~~v~~vivg~~~~~~l~~nl~a~~~~L~~~~~~~i~~~~~~~ 319 (345)
+..+...++|..+|+++| .|..++|++|++.+|.-..||+|+.+++++++.++|++..||.++|-+|..+..+.
T Consensus 221 -----~~~q~l~~~l~~ia~e~ga~s~~~VaiAWllR~Pa~~~PiiGt~~~eRi~~a~~Al~~~LtRqqWf~Iy~Aa~G~ 295 (298)
T COG4989 221 -----DKFQRLRKVLDRIAEEYGAVSITAVAIAWLLRHPAKPQPIIGTGNLERIRAAIKALSLTLTRQQWFEIYTAAIGN 295 (298)
T ss_pred -----cchHHHHHHHHHHHHHhCcccHHHHHHHHHHhCcCcccceecCCCHHHHHHHHHHhhccccHHHHHHHHHHhccC
Confidence 223455679999999999 79999999999999998899999999999999999999999999999999987543
No 15
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=6.6e-53 Score=387.27 Aligned_cols=259 Identities=30% Similarity=0.405 Sum_probs=227.2
Q ss_pred CCCCCCCCCceeecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhc
Q 019173 1 MAEGMKLQVPRVKLGTQGLEVSKLGFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKM 80 (345)
Q Consensus 1 ~~~~~~~~m~~~~lg~tg~~vs~lg~G~~~~g~~~~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~ 80 (345)
||+.+. ..+ ++|+.||.||||||++ +.+++.+++++|++.|+|+||||+.|| +|+.+|++|+.
T Consensus 1 ~~~~~~-----~~l-~~g~~v~~lglG~~~~--------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg---~E~~lG~al~~ 63 (275)
T PRK11565 1 MANPTV-----IKL-QDGNVMPQLGLGVWQA--------SNEEVITAIHKALEVGYRSIDTAAIYK---NEEGVGKALKE 63 (275)
T ss_pred CCCCce-----EEc-CCCCccCCcceECccC--------CHHHHHHHHHHHHHhCCCEEEchhhhC---CHHHHHHHHHH
Confidence 666555 336 7899999999999974 468899999999999999999999998 79999999986
Q ss_pred --CCCCCeEEEeccccccCCccccccCCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCC-CHHHHHHHHHHHHHcCCc
Q 019173 81 --LPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSV-PIEETIGEMKKLVEEGKI 157 (345)
Q Consensus 81 --~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~-~~~~~~~~L~~L~~~G~i 157 (345)
.+|++++|+||++. .+++.+++++++||+|||+||||+|++|+|++.. ++.++|++|++|+++|+|
T Consensus 64 ~~~~R~~~~i~tK~~~-----------~~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~i 132 (275)
T PRK11565 64 ASVAREELFITTKLWN-----------DDHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLI 132 (275)
T ss_pred cCCCHHHEEEEEEecC-----------cchHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCCe
Confidence 36999999999863 1467899999999999999999999999998753 478999999999999999
Q ss_pred ceEecCCCcHHHHHHHhcCC--CeeEEeccccccccccccchhhHHHhhCCeEEeecCCCccccCCCCCCCCCCCCCccc
Q 019173 158 KYIGLSEASPDTIRRAHAVH--PITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLGRGFFGGKAVVESVPPDSFLN 235 (345)
Q Consensus 158 r~iGvS~~~~~~l~~~~~~~--~~~~~q~~~nl~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~ 235 (345)
|+||+|||+.+++.+++... .+.++|++||++.++ .+++++|+++||++++|+||++|. ..
T Consensus 133 r~iGvSn~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~--~~~~~~~~~~~i~~~a~spl~~G~---~~------------ 195 (275)
T PRK11565 133 KSIGVCNFQIHHLQRLIDETGVTPVINQIELHPLMQQ--RQLHAWNATHKIQTESWSPLAQGG---KG------------ 195 (275)
T ss_pred eEEeeccCCHHHHHHHHHhCCCCceeeeeecCCccch--HHHHHHHHHCCCEEEEEccCCCCC---cc------------
Confidence 99999999999998887543 468999999999875 579999999999999999999762 00
Q ss_pred cCCCCCccchhhhHHHHHHHHHHHHHcCCChHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcCCCCCHHHHHHHHhh
Q 019173 236 FLPRFTGENLDRNRSIYFRIENLAKKYKCTSAQLALAWVLEQGDDVVPIPGTTKIKNLEDNIVSLTVKLTNKDLKEISDA 315 (345)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~~~al~~~l~~~~v~~vivg~~~~~~l~~nl~a~~~~L~~~~~~~i~~~ 315 (345)
.+. .+.|.++|+++|+|++|+||||++++|. +||+|+++++|+++|+++++++|+++++++|+++
T Consensus 196 ---~~~----------~~~l~~ia~~~g~s~aq~aL~w~l~~~~--~~I~g~~~~~~i~~n~~a~~~~Ls~~~~~~i~~~ 260 (275)
T PRK11565 196 ---VFD----------QKVIRDLADKYGKTPAQIVIRWHLDSGL--VVIPKSVTPSRIAENFDVFDFRLDKDELGEIAKL 260 (275)
T ss_pred ---ccc----------CHHHHHHHHHhCCCHHHHHHHHHHcCCC--EeeCCCCCHHHHHHHHhccCCCcCHHHHHHHHhh
Confidence 000 1378999999999999999999999986 6999999999999999999999999999999999
Q ss_pred CCCC
Q 019173 316 VPTE 319 (345)
Q Consensus 316 ~~~~ 319 (345)
...+
T Consensus 261 ~~~~ 264 (275)
T PRK11565 261 DQGK 264 (275)
T ss_pred cccC
Confidence 8643
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=4.7e-50 Score=364.11 Aligned_cols=271 Identities=28% Similarity=0.381 Sum_probs=243.3
Q ss_pred CceeecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEE
Q 019173 9 VPRVKLGTQGLEVSKLGFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLPRENIQV 88 (345)
Q Consensus 9 m~~~~lg~tg~~vs~lg~G~~~~g~~~~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~R~~~~i 88 (345)
|.||++|++|.++|.||||||++...|...+|.+.+.+++++|++.|||+||||..|..|.||..+|++|.+..|+++.+
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~L 80 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKL 80 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccCCCchHHHHHHhhhcccceEEE
Confidence 78999999999999999999999876766679999999999999999999999999988889999999999988999999
Q ss_pred EeccccccCCccccccCCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCCCHH-----HHHHHHHHHHHcCCcceEecC
Q 019173 89 ATKFGFAELGLDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIE-----ETIGEMKKLVEEGKIKYIGLS 163 (345)
Q Consensus 89 ~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~-----~~~~~L~~L~~~G~ir~iGvS 163 (345)
+||+.... .-+++.+++-++++|++||+||+|+|+||..+. ..++ +.++.+++++++|+||++|+|
T Consensus 81 aTKlp~~~--------~~~~edm~r~fneqLekl~~Dy~D~yliH~l~~-e~~~k~~~~g~~df~~kak~eGkIr~~GFS 151 (391)
T COG1453 81 ATKLPSWP--------VKDREDMERIFNEQLEKLGTDYIDYYLIHGLNT-ETWEKIERLGVFDFLEKAKAEGKIRNAGFS 151 (391)
T ss_pred EeecCCcc--------ccCHHHHHHHHHHHHHHhCCchhhhhhhccccH-HHHHHHHccChHHHHHHHHhcCcEEEeeec
Confidence 99997532 346899999999999999999999999999987 4453 369999999999999999999
Q ss_pred CC-cHHHHHHHhcCCCeeEEeccccccccccc--cchhhHHHhhCCeEEeecCCCccccCCCCCCCCCCCCCccccCCCC
Q 019173 164 EA-SPDTIRRAHAVHPITAVQLEWSLWTRDIE--NEIVPLCRELGIGIVPYSPLGRGFFGGKAVVESVPPDSFLNFLPRF 240 (345)
Q Consensus 164 ~~-~~~~l~~~~~~~~~~~~q~~~nl~~~~~~--~~~l~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~ 240 (345)
.| +++.+.+++...+++++|++||.++.... .+.+++|.++|++|+.++|+.+|-|..+. |
T Consensus 152 fHgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~~~~~~l~~A~~~~~gI~IMeP~~gG~l~~~v--------------P-- 215 (391)
T COG1453 152 FHGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQAGTEGLKYAASKGLGIFIMEPLDGGGLLYNV--------------P-- 215 (391)
T ss_pred CCCCHHHHHHHHhcCCcceEEeeeeeeccchhcccHHHHHHHhCCCcEEEEeeCCCCCcccCC--------------C--
Confidence 99 56788999999999999999999998643 38999999999999999999999776431 1
Q ss_pred CccchhhhHHHHHHHHHHHHHcC--CChHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcCC--C-CCHHHHHHHHhh
Q 019173 241 TGENLDRNRSIYFRIENLAKKYK--CTSAQLALAWVLEQGDDVVPIPGTTKIKNLEDNIVSLTV--K-LTNKDLKEISDA 315 (345)
Q Consensus 241 ~~~~~~~~~~~~~~l~~ia~~~g--~s~~~~al~~~l~~~~v~~vivg~~~~~~l~~nl~a~~~--~-L~~~~~~~i~~~ 315 (345)
+++.+++.+++ .||+..|+||++++|.|++|++|+++++|+++|++..+. | ||++|++.|.++
T Consensus 216 ------------~~~~~l~~~~~~~~sP~~wa~R~~~shp~V~~vlsGm~~~~~l~enLk~~~~~~p~lte~e~~il~~v 283 (391)
T COG1453 216 ------------EKLEELCRPASPKRSPAEWALRYLLSHPEVTTVLSGMNTPEQLEENLKIASELEPSLTEEELQILEKV 283 (391)
T ss_pred ------------HHHHHHHHhcCCCCCcHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHHHHhhcCCccCHHHHHHHHHH
Confidence 37888998876 689999999999999999999999999999999998874 4 999998888776
Q ss_pred C
Q 019173 316 V 316 (345)
Q Consensus 316 ~ 316 (345)
-
T Consensus 284 ~ 284 (391)
T COG1453 284 E 284 (391)
T ss_pred H
Confidence 5
No 17
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=4.8e-50 Score=348.26 Aligned_cols=291 Identities=26% Similarity=0.388 Sum_probs=249.2
Q ss_pred CCceeecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeE
Q 019173 8 QVPRVKLGTQGLEVSKLGFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLPRENIQ 87 (345)
Q Consensus 8 ~m~~~~lg~tg~~vs~lg~G~~~~g~~~~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~R~~~~ 87 (345)
+|++|.+|.||++||+|+||+..+++.|+.. ++++....+..|+++|||+|||++.||.++||..+|.++++.||+.+|
T Consensus 21 rmeyR~lg~tgl~VSk~~fGga~L~~~fgd~-~~e~~i~tv~eA~k~GINyiDTsp~Ygqs~se~~lg~al~~vPR~aYy 99 (342)
T KOG1576|consen 21 RMEYRQLGSTGLRVSKLGFGGAALGQLFGDE-DEEEGILTVIEAFKSGINYIDTSPYYGQSRSEEGLGLALKDVPREAYY 99 (342)
T ss_pred HHHHhhcCCCcceeeeeeecchhhhhhcCCc-chhhhHHHHHHHHHccccceecCcccCcchhHHHHHHHHhhCChhhee
Confidence 4799999999999999999999999988874 788888888889999999999999999999999999999999999999
Q ss_pred EEeccccccCCccccccCCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCC----CCHHHHHHHHHHHHHcCCcceEecC
Q 019173 88 VATKFGFAELGLDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTS----VPIEETIGEMKKLVEEGKIKYIGLS 163 (345)
Q Consensus 88 i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~----~~~~~~~~~L~~L~~~G~ir~iGvS 163 (345)
|+||++....+. ....+++++.++++|++||+||++||+|++++|..+.. ..+.|++.+|++||++||+|+|||+
T Consensus 100 IaTKvgRy~ld~-~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiGit 178 (342)
T KOG1576|consen 100 IATKVGRYELDY-ANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFIGIT 178 (342)
T ss_pred eeeeeeecccCc-cccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEeeec
Confidence 999999653321 23468999999999999999999999999999998764 2357999999999999999999999
Q ss_pred CCcHHHHHHHhcCC--CeeEEe--ccccccccccccchhhHHHhhCCeEEeecCCCccccCCCCCCCCCCCCCccccCCC
Q 019173 164 EASPDTIRRAHAVH--PITAVQ--LEWSLWTRDIENEIVPLCRELGIGIVPYSPLGRGFFGGKAVVESVPPDSFLNFLPR 239 (345)
Q Consensus 164 ~~~~~~l~~~~~~~--~~~~~q--~~~nl~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~ 239 (345)
.++.+.+.+..+.. .++++. .+|++.+... -..+++.+.+|++|+.-++++.|+|+.+.++
T Consensus 179 gypldvl~~~ae~~~G~~dvvlsY~ry~l~d~tL-l~~~~~~~sk~vgVi~AsalsmgLLt~~gp~-------------- 243 (342)
T KOG1576|consen 179 GYPLDVLTECAERGKGRLDVVLSYCRYTLNDNTL-LRYLKRLKSKGVGVINASALSMGLLTNQGPP-------------- 243 (342)
T ss_pred ccchHHHHHHHhcCCCceeeehhhhhhccccHHH-HHHHHHHHhcCceEEehhhHHHHHhhcCCCC--------------
Confidence 99999999888773 467776 5666655432 4667788899999999999999999965322
Q ss_pred CCccchhhhHHHHHHHHHHHHHcCCChHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcCCCCCHHHHHHHHhh
Q 019173 240 FTGENLDRNRSIYFRIENLAKKYKCTSAQLALAWVLEQGDDVVPIPGTTKIKNLEDNIVSLTVKLTNKDLKEISDA 315 (345)
Q Consensus 240 ~~~~~~~~~~~~~~~l~~ia~~~g~s~~~~al~~~l~~~~v~~vivg~~~~~~l~~nl~a~~~~L~~~~~~~i~~~ 315 (345)
-.++..++..+...+-.++|.+.++++..+|++|.++.|++++|++|+++.++|+.|+++....||..+-++...+
T Consensus 244 ~wHPaS~Elk~~a~~aa~~Cq~rnv~l~kLA~~Yam~~~~~~~~lvGm~s~~~l~~nLdan~~~ls~~~~Qevl~~ 319 (342)
T KOG1576|consen 244 PWHPASDELKEAAKAAAEYCQSRNVELGKLAMYYAMSLPGVSTVLVGMSSRQLLRINLDANFDRLSSKHEQEVLRI 319 (342)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHccCCcceEEecCchHHHHHHHHHhhhccccchhHHHHHHH
Confidence 2234457778888899999999999999999999999999999999999999999999987667877333333333
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=97.78 E-value=4.4e-05 Score=66.77 Aligned_cols=70 Identities=17% Similarity=0.193 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcC--CCeeEEeccccccccccccchhhHHHhhCCeEEeec
Q 019173 142 EETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV--HPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYS 212 (345)
Q Consensus 142 ~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~--~~~~~~q~~~nl~~~~~~~~~l~~~~~~gi~v~a~~ 212 (345)
.++|+.|++++.+|+|..||+|.|+..+|++++.. ..|.++|+...-...-+ .++.+||..++|.+..++
T Consensus 156 kplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~~cCvvP-pdLqafa~~hdiQLltHs 227 (285)
T KOG3023|consen 156 KPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLGQCCVVP-PDLQAFADRHDIQLLTHS 227 (285)
T ss_pred HHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeeccccccCC-HHHHHHhhhcceeeeecC
Confidence 46799999999999999999999999999999887 45788999877666554 589999999999998754
No 19
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=91.43 E-value=7.5 Score=36.29 Aligned_cols=155 Identities=13% Similarity=0.060 Sum_probs=95.2
Q ss_pred CHHHHHHHHHHHHHcCCCeeecCCCCCCC-cHHHHHHHHHhcCCCCCeEEEeccccccCCccccccCCCHHHHHHHHHHH
Q 019173 40 SEEDGISIIKHAFNKGITFFDTADKYGPY-TNEILLGKALKMLPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEAS 118 (345)
Q Consensus 40 ~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g-~sE~~lG~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~s 118 (345)
+.++..+.++.+.+.|++.|+.-- |.. ..+.-.=+++++.-. ++-|.-++. ..++.+.. ..+-+.
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~--g~~~~~d~~~v~~lr~~~g-~~~l~vD~n----------~~~~~~~A-~~~~~~ 199 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKL--GGDLEDDIERIRAIREAAP-DARLRVDAN----------QGWTPEEA-VELLRE 199 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEe--CCChhhHHHHHHHHHHhCC-CCeEEEeCC----------CCcCHHHH-HHHHHH
Confidence 567788888999999999998742 211 122222233443112 555555553 13444433 334445
Q ss_pred HhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcce-EecCCCcHHHHHHHhcCCCeeEEecccccccc-ccccc
Q 019173 119 LKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKY-IGLSEASPDTIRRAHAVHPITAVQLEWSLWTR-DIENE 196 (345)
Q Consensus 119 L~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~-iGvS~~~~~~l~~~~~~~~~~~~q~~~nl~~~-~~~~~ 196 (345)
|+++++ .++-.|-... -++.+.+|++...|.- .|=+-++...+..+++....+++|+.-+..-. ..-.+
T Consensus 200 l~~~~l-----~~iEeP~~~~----d~~~~~~L~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~~~~~ 270 (316)
T cd03319 200 LAELGV-----ELIEQPVPAG----DDDGLAYLRDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLTEALR 270 (316)
T ss_pred HHhcCC-----CEEECCCCCC----CHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHHHHHH
Confidence 555544 4444443322 2556777888777762 24445788889999988889999997665321 11268
Q ss_pred hhhHHHhhCCeEEeecCCCcc
Q 019173 197 IVPLCRELGIGIVPYSPLGRG 217 (345)
Q Consensus 197 ~l~~~~~~gi~v~a~~pl~~G 217 (345)
+..+|+++|+.++..+-+.++
T Consensus 271 ~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 271 IADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHHHHHcCCCEEEECchhhH
Confidence 899999999999987666544
No 20
>PRK07945 hypothetical protein; Provisional
Probab=86.21 E-value=8.7 Score=36.36 Aligned_cols=154 Identities=14% Similarity=0.100 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHcCCCeeecCCCCCC-----CcHHHHHHHHHhcC--CCCCeE-EEeccccccCCccccccCCCHHHHH
Q 019173 41 EEDGISIIKHAFNKGITFFDTADKYGP-----YTNEILLGKALKML--PRENIQ-VATKFGFAELGLDAVIVKGNPEYVR 112 (345)
Q Consensus 41 ~~~a~~~l~~A~~~Gi~~~DTA~~Yg~-----g~sE~~lG~~l~~~--~R~~~~-i~tK~~~~~~~~~~~~~~~~~~~i~ 112 (345)
.....+++++|.+.|+..+=.++|.-. +-+...+-..++.. .|+++- |.-++|..-. ..++.+.+..
T Consensus 110 ~~~~ee~v~~Ai~~Gl~~i~~TDH~p~~~~~~~~~~~~l~~y~~~i~~l~~ky~~I~Il~GiE~d----~~~~g~~~~~- 184 (335)
T PRK07945 110 GSPIEEMARTAAALGHEYCALTDHSPRLTVANGLSAERLRKQLDVVAELNEELAPFRILTGIEVD----ILDDGSLDQE- 184 (335)
T ss_pred CCCHHHHHHHHHHCCCCEEEEeCCCCCccCCCCCCHHHHHHHHHHHHHHHHhcCCceEEEEeEec----ccCCCCcchh-
Confidence 345789999999999998877776421 12233333333221 111110 3334443311 0011122222
Q ss_pred HHHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCC---------------CcHHHHHHHhcCC
Q 019173 113 SCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE---------------ASPDTIRRAHAVH 177 (345)
Q Consensus 113 ~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~---------------~~~~~l~~~~~~~ 177 (345)
++.|+. .||+ +.-+|+... .+..+..+.+.++.+.|.+.-+|=-. +....+.+++...
T Consensus 185 ---~~~l~~--~D~v-IgSvH~~~~-~~~~~~~~~l~~ai~~~~~dvlgH~D~~~~~~~~~~~~~~~~~~~~i~~a~~e~ 257 (335)
T PRK07945 185 ---PELLDR--LDVV-VASVHSKLR-MDAAAMTRRMLAAVANPHTDVLGHCTGRLVTGNRGTRPESKFDAEAVFAACREH 257 (335)
T ss_pred ---HHHHHh--CCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCCeEEecCchhhhccccCCCChhhcCHHHHHHHHHHh
Confidence 333443 4666 777898643 23456678888888888888887321 1112222332222
Q ss_pred --CeeEEeccccccccccccchhhHHHhhCCeEE
Q 019173 178 --PITAVQLEWSLWTRDIENEIVPLCRELGIGIV 209 (345)
Q Consensus 178 --~~~~~q~~~nl~~~~~~~~~l~~~~~~gi~v~ 209 (345)
.+.+| -+.+...+...+++.|++.|+.++
T Consensus 258 g~~lEIN---t~~~r~~P~~~il~~a~e~G~~vt 288 (335)
T PRK07945 258 GTAVEIN---SRPERRDPPTRLLRLALDAGCLFS 288 (335)
T ss_pred CCEEEEe---CCCCCCCChHHHHHHHHHcCCeEE
Confidence 23333 222223344678888888888754
No 21
>PRK08392 hypothetical protein; Provisional
Probab=85.24 E-value=17 Score=31.96 Aligned_cols=148 Identities=14% Similarity=0.134 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhc----CCCCCeEEEeccccccCCccccccCCCHHHHHHHHHH
Q 019173 42 EDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKM----LPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEA 117 (345)
Q Consensus 42 ~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~----~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~ 117 (345)
....++++.|.+.|++.|=.++|.-.. ...-+-..+++ ..+.+ |.-+.|.... ..++. ....++
T Consensus 14 ~~~~e~v~~A~~~Gl~~i~iTdH~~~~-~~~~~~~y~~~i~~l~~~~~--i~il~GiE~~--------~~~~~-~~~~~~ 81 (215)
T PRK08392 14 GSVRDNIAEAERKGLRLVGISDHIHYF-TPSKFNAYINEIRQWGEESE--IVVLAGIEAN--------ITPNG-VDITDD 81 (215)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCCCcc-chhhHHHHHHHHHHHhhccC--ceEEEeEEee--------ecCCc-chhHHH
Confidence 346788999999999999777765211 11112222222 11122 3333343210 00111 123334
Q ss_pred HHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCC-------c-HHHHHHH---hcCC--CeeEEec
Q 019173 118 SLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-------S-PDTIRRA---HAVH--PITAVQL 184 (345)
Q Consensus 118 sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~~-------~-~~~l~~~---~~~~--~~~~~q~ 184 (345)
.+++ .||+ +.-+|.........+-++.+.++.+.|.+.-+|=-.. . ...+.++ +... .+.+|-
T Consensus 82 ~~~~--~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~d~~~~~~~~~~~~~~~~i~~~~~~~g~~lEiNt- 157 (215)
T PRK08392 82 FAKK--LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGHFGNSFPYIGYPSEEELKEILDLAEAYGKAFEISS- 157 (215)
T ss_pred HHhh--CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeCCCccccCCCCchHHHHHHHHHHHHHhCCEEEEeC-
Confidence 4444 3666 6777844333335567788888889998777764221 1 1222222 2222 233332
Q ss_pred cccccccccccchhhHHHhhCCeEE
Q 019173 185 EWSLWTRDIENEIVPLCRELGIGIV 209 (345)
Q Consensus 185 ~~nl~~~~~~~~~l~~~~~~gi~v~ 209 (345)
..+.+...+++.|++.|+.++
T Consensus 158 ----~~~~p~~~~l~~~~~~G~~~~ 178 (215)
T PRK08392 158 ----RYRVPDLEFIRECIKRGIKLT 178 (215)
T ss_pred ----CCCCCCHHHHHHHHHcCCEEE
Confidence 122234578899999997754
No 22
>PRK08609 hypothetical protein; Provisional
Probab=85.16 E-value=17 Score=37.09 Aligned_cols=151 Identities=15% Similarity=0.148 Sum_probs=81.2
Q ss_pred HHHHHHHHHHcCCCeeecCCCCC-----CCcHHHHHHHHHhc---CCC--CCeEEEeccccccCCccccccCCCHHHHHH
Q 019173 44 GISIIKHAFNKGITFFDTADKYG-----PYTNEILLGKALKM---LPR--ENIQVATKFGFAELGLDAVIVKGNPEYVRS 113 (345)
Q Consensus 44 a~~~l~~A~~~Gi~~~DTA~~Yg-----~g~sE~~lG~~l~~---~~R--~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~ 113 (345)
..++++.|.+.|+..|=.++|+. .|.+...+-..++. .++ .++ .-..|... +..++....
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i--~Il~GiEv--------~i~~~g~~d 420 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEI--DILSGIEM--------DILPDGSLD 420 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEEEEE--------eecCCcchh
Confidence 55599999999999999998862 22333333333222 011 122 22333221 111111122
Q ss_pred HHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCC---------Cc--HHHHHHHhcCCCeeEE
Q 019173 114 CCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE---------AS--PDTIRRAHAVHPITAV 182 (345)
Q Consensus 114 ~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~---------~~--~~~l~~~~~~~~~~~~ 182 (345)
-.+..|+. .||+ +.-+|++.. .+.+++++.+.++.+.|.+.-||=-. +. .+.+.+++.... .++
T Consensus 421 ~~~~~L~~--~D~v-I~SvH~~~~-~~~~~~~~~l~~a~~~~~~dILaHpd~rli~~~~~~~~d~~~i~~~a~~~G-~~l 495 (570)
T PRK08609 421 YDDEVLAE--LDYV-IAAIHSSFS-QSEEEIMKRLENACRNPYVRLIAHPTGRLIGRRDGYDVNIDQLIELAKETN-TAL 495 (570)
T ss_pred hcHHHHHh--hCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCceEEECCCccccccCCCchHHHHHHHHHHHHhC-CEE
Confidence 22334554 4676 777897533 34677888899999888887775433 11 122222322222 345
Q ss_pred eccccccccccccchhhHHHhhCCeEE
Q 019173 183 QLEWSLWTRDIENEIVPLCRELGIGIV 209 (345)
Q Consensus 183 q~~~nl~~~~~~~~~l~~~~~~gi~v~ 209 (345)
|+.-+.+.......++..|.+.|+.++
T Consensus 496 EINa~~~r~~~~~~~~~~~~e~Gv~i~ 522 (570)
T PRK08609 496 ELNANPNRLDLSAEHLKKAQEAGVKLA 522 (570)
T ss_pred EEcCCccccCccHHHHHHHHHcCCEEE
Confidence 555544433334678888888888644
No 23
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=83.56 E-value=36 Score=31.88 Aligned_cols=132 Identities=12% Similarity=0.004 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHHcCCCeee---cCC-----CCCCC----cHHHHHHHHHhcC---CCCCeEEEeccccccCCcccccc
Q 019173 40 SEEDGISIIKHAFNKGITFFD---TAD-----KYGPY----TNEILLGKALKML---PRENIQVATKFGFAELGLDAVIV 104 (345)
Q Consensus 40 ~~~~a~~~l~~A~~~Gi~~~D---TA~-----~Yg~g----~sE~~lG~~l~~~---~R~~~~i~tK~~~~~~~~~~~~~ 104 (345)
++++..+....+.+.|+..|| -++ .||.| ..-+.+.+.++.. -..++-|+.|+.....
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~------- 145 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWD------- 145 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCC-------
Confidence 678888888888999999999 233 36654 3345555555541 1224678888754211
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCCCHHH---HHHHHHHHHHcCCcceEecCC-CcHHHHHHHhcCCCee
Q 019173 105 KGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEE---TIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPIT 180 (345)
Q Consensus 105 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~---~~~~L~~L~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~ 180 (345)
+.+. ...+-+.|+..| +|.+-+|.-........ -|+...++++.-.|--||... ++++...++++....+
T Consensus 146 --~~~~-~~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~D 219 (312)
T PRK10550 146 --SGER-KFEIADAVQQAG---ATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCD 219 (312)
T ss_pred --CchH-HHHHHHHHHhcC---CCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCC
Confidence 1122 246666778887 57777886543221111 267777777776788788776 4778888888777778
Q ss_pred EEec
Q 019173 181 AVQL 184 (345)
Q Consensus 181 ~~q~ 184 (345)
.+++
T Consensus 220 gVmi 223 (312)
T PRK10550 220 AVMI 223 (312)
T ss_pred EEEE
Confidence 7777
No 24
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=76.12 E-value=60 Score=29.85 Aligned_cols=152 Identities=12% Similarity=0.067 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHHHHcCCCeeec---CCCCCC-----CcHHHHHHHHHhcCCCC-CeEEEeccccccCCccccccCCCHHH
Q 019173 40 SEEDGISIIKHAFNKGITFFDT---ADKYGP-----YTNEILLGKALKMLPRE-NIQVATKFGFAELGLDAVIVKGNPEY 110 (345)
Q Consensus 40 ~~~~a~~~l~~A~~~Gi~~~DT---A~~Yg~-----g~sE~~lG~~l~~~~R~-~~~i~tK~~~~~~~~~~~~~~~~~~~ 110 (345)
+.++..+..+.+.+.|+..||. ++++.. +.+.+.+-+.++...+. ++-|..|+.+.. +.
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~------------~~ 167 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPNV------------TD 167 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCCc------------hh
Confidence 5778888899999999999985 222211 13566666666662222 577888876421 11
Q ss_pred HHHHHHHHHhhcCCCcccEEE------eccCCCC-------------CCHHHHHHHHHHHHHcCCcceEecCCC-cHHHH
Q 019173 111 VRSCCEASLKRLDVEYIDLYY------QHRVDTS-------------VPIEETIGEMKKLVEEGKIKYIGLSEA-SPDTI 170 (345)
Q Consensus 111 i~~~v~~sL~~Lg~d~iDl~~------lH~~~~~-------------~~~~~~~~~L~~L~~~G~ir~iGvS~~-~~~~l 170 (345)
...+-+.++..|.|.|++.- +|.-... ....-.++.+.++++.=.+--||+... +.+.+
T Consensus 168 -~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~~da 246 (296)
T cd04740 168 -IVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASGEDA 246 (296)
T ss_pred -HHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCHHHH
Confidence 23444567788987776631 1110000 001124566677777656888888874 77888
Q ss_pred HHHhcCCCeeEEecccccccccc------ccchhhHHHhhCC
Q 019173 171 RRAHAVHPITAVQLEWSLWTRDI------ENEIVPLCRELGI 206 (345)
Q Consensus 171 ~~~~~~~~~~~~q~~~nl~~~~~------~~~~l~~~~~~gi 206 (345)
.+++... .+.+|+-=.++. ++ ..++.++.+++|.
T Consensus 247 ~~~l~~G-Ad~V~igra~l~-~p~~~~~i~~~l~~~~~~~g~ 286 (296)
T cd04740 247 LEFLMAG-ASAVQVGTANFV-DPEAFKEIIEGLEAYLDEEGI 286 (296)
T ss_pred HHHHHcC-CCEEEEchhhhc-ChHHHHHHHHHHHHHHHHcCC
Confidence 8888654 688887333322 22 2566666777764
No 25
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=75.78 E-value=61 Score=29.24 Aligned_cols=158 Identities=14% Similarity=0.156 Sum_probs=93.5
Q ss_pred CHHHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeccccccCCccccccCCCHHHHHHHHHHHH
Q 019173 40 SEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEASL 119 (345)
Q Consensus 40 ~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL 119 (345)
+.++..+.++.+.+.|++.|-.--.-.. ..+...=+++++.-.+++.|.-... ..++.+...+-+ +.|
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~~-~~d~~~v~~vr~~~g~~~~l~vDan----------~~~~~~~a~~~~-~~l 152 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRDP-ARDVAVVAALREAVGDDAELRVDAN----------RGWTPKQAIRAL-RAL 152 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCH-HHHHHHHHHHHHhcCCCCEEEEeCC----------CCcCHHHHHHHH-HHH
Confidence 4577778888889999998875321110 1122222344442233444433321 234554443333 344
Q ss_pred hhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhcCCCeeEEecccccccc-ccccch
Q 019173 120 KRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWTR-DIENEI 197 (345)
Q Consensus 120 ~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~nl~~~-~~~~~~ 197 (345)
+.++ +.++..|-+.. -++.+.+|++.-.+. ..|=+.++...+.++++...++++|+..+..-. ..-.++
T Consensus 153 ~~~~-----i~~iEeP~~~~----d~~~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~~~~~~ 223 (265)
T cd03315 153 EDLG-----LDYVEQPLPAD----DLEGRAALARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLTKAQRV 223 (265)
T ss_pred HhcC-----CCEEECCCCcc----cHHHHHHHHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHHHHHHH
Confidence 5554 44456554432 246667777776555 333345688888888888888999997665432 112688
Q ss_pred hhHHHhhCCeEEeecCCCccc
Q 019173 198 VPLCRELGIGIVPYSPLGRGF 218 (345)
Q Consensus 198 l~~~~~~gi~v~a~~pl~~G~ 218 (345)
...|+++|+.++..+.+.+|+
T Consensus 224 ~~~A~~~gi~~~~~~~~~s~i 244 (265)
T cd03315 224 LAVAEALGLPVMVGSMIESGL 244 (265)
T ss_pred HHHHHHcCCcEEecCccchHH
Confidence 999999999999877665543
No 26
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=74.96 E-value=8.8 Score=33.63 Aligned_cols=67 Identities=15% Similarity=0.200 Sum_probs=47.0
Q ss_pred HHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecC-CCcHHHHHHHhcCCCeeEEeccc
Q 019173 118 SLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPITAVQLEW 186 (345)
Q Consensus 118 sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~ 186 (345)
.+..+|.||+=+.+.....+..+.+.+ ..+.+.. .+.++.+||. |.+++.+.++.+..+++++|+.-
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~V~~~~a-~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG 83 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRHQTITQI-KKLASAV-PNHIDKVCVVVNPDLTTIEHILSNTSINTIQLHG 83 (207)
T ss_pred HHHHcCCCEEEEecCCCCcccCCHHHH-HHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECC
Confidence 456799999999755543334444433 3333332 3568889996 67889999999888999999954
No 27
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=74.80 E-value=77 Score=29.94 Aligned_cols=154 Identities=12% Similarity=0.105 Sum_probs=90.1
Q ss_pred CHHHHHHHHHHHHHcCCCeeecC--CCCCCC---cHHHHHHHHHhcCCCCCeEEEeccccccCCccccccCCCHHHHHHH
Q 019173 40 SEEDGISIIKHAFNKGITFFDTA--DKYGPY---TNEILLGKALKMLPRENIQVATKFGFAELGLDAVIVKGNPEYVRSC 114 (345)
Q Consensus 40 ~~~~a~~~l~~A~~~Gi~~~DTA--~~Yg~g---~sE~~lG~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 114 (345)
+.++..+.++.+.+.|++.|-.- ..|..+ +-+.-+=+++++.-.+++.|..... ..++.+...+-
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~vDaN----------~~~~~~~a~~~ 208 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDAN----------GRWDLAEAIRL 208 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEEECC----------CCCCHHHHHHH
Confidence 46777888888889999988742 222100 0112222334432223455544432 13454444332
Q ss_pred HHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhcCCCeeEEecccccccc-c
Q 019173 115 CEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWTR-D 192 (345)
Q Consensus 115 v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~nl~~~-~ 192 (345)
+ +.|+.+ ++.++..|-+.. -++.+.+|++.-.+. ..|=|.++.+.+.++++....+++|+...-.-. .
T Consensus 209 ~-~~l~~~-----~i~~iEqP~~~~----~~~~~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~ 278 (357)
T cd03316 209 A-RALEEY-----DLFWFEEPVPPD----DLEGLARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTKVGGIT 278 (357)
T ss_pred H-HHhCcc-----CCCeEcCCCCcc----CHHHHHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccccCCHH
Confidence 2 223333 455666664432 356677777775555 233345688889999888888999997665421 1
Q ss_pred cccchhhHHHhhCCeEEeecC
Q 019173 193 IENEIVPLCRELGIGIVPYSP 213 (345)
Q Consensus 193 ~~~~~l~~~~~~gi~v~a~~p 213 (345)
.-.++...|+++|+.++..+-
T Consensus 279 ~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 279 EAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred HHHHHHHHHHHcCCeEeccCC
Confidence 126899999999999887653
No 28
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=74.09 E-value=20 Score=32.16 Aligned_cols=106 Identities=14% Similarity=0.108 Sum_probs=67.6
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC-CcceEecCCCcHHHHHHHhcCCCeeEEe
Q 019173 105 KGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSEASPDTIRRAHAVHPITAVQ 183 (345)
Q Consensus 105 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G-~ir~iGvS~~~~~~l~~~~~~~~~~~~q 183 (345)
.++.+...+ +-+.|.++|+++|.+-..-.+...-...+.++.++.+++.+ .++...++......++.+.+.. ++.++
T Consensus 15 ~~s~e~~~~-i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g-~~~i~ 92 (265)
T cd03174 15 TFSTEDKLE-IAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG-VDEVR 92 (265)
T ss_pred CCCHHHHHH-HHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC-cCEEE
Confidence 455555544 45558899999888877655432212245678888888888 5776677765566666666553 56666
Q ss_pred ccccccc--------cc------cccchhhHHHhhCCeEEeec
Q 019173 184 LEWSLWT--------RD------IENEIVPLCRELGIGIVPYS 212 (345)
Q Consensus 184 ~~~nl~~--------~~------~~~~~l~~~~~~gi~v~a~~ 212 (345)
+.+..-+ +. .-.+.++.+++.|+.+...-
T Consensus 93 i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 93 IFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred EEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 6554331 11 11578888999998877544
No 29
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=73.55 E-value=56 Score=29.72 Aligned_cols=133 Identities=12% Similarity=0.183 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcC--CCeeEEec
Q 019173 107 NPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV--HPITAVQL 184 (345)
Q Consensus 107 ~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~--~~~~~~q~ 184 (345)
+.+.+.+...+. ..-|-++||+-.= +......+.+...++.+++.-.+ -|-+-+++++.++++++. ...-++
T Consensus 23 d~~~i~~~A~~~-~~~GAdiIDVg~~--~~~~eE~~r~~~~v~~l~~~~~~-plsIDT~~~~v~eaaL~~~~G~~iIN-- 96 (261)
T PRK07535 23 DAAFIQKLALKQ-AEAGADYLDVNAG--TAVEEEPETMEWLVETVQEVVDV-PLCIDSPNPAAIEAGLKVAKGPPLIN-- 96 (261)
T ss_pred CHHHHHHHHHHH-HHCCCCEEEECCC--CCchhHHHHHHHHHHHHHHhCCC-CEEEeCCCHHHHHHHHHhCCCCCEEE--
Confidence 445555555444 4678899998753 22223344556666666554233 378888999999999887 332233
Q ss_pred cccccccccccchhhHHHhhCCeEEeecCCCccccCCCCCCCCCCCCCccccCCCCCccchhhhHHHHHHHHHHHHHcCC
Q 019173 185 EWSLWTRDIENEIVPLCRELGIGIVPYSPLGRGFFGGKAVVESVPPDSFLNFLPRFTGENLDRNRSIYFRIENLAKKYKC 264 (345)
Q Consensus 185 ~~nl~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~ 264 (345)
.-+..... ...+++.++++|++++...--..|. | ...+.....+.++.+.|.++|+
T Consensus 97 sIs~~~~~-~~~~~~l~~~~g~~vv~m~~~~~g~----------P-------------~t~~~~~~~l~~~v~~a~~~GI 152 (261)
T PRK07535 97 SVSAEGEK-LEVVLPLVKKYNAPVVALTMDDTGI----------P-------------KDAEDRLAVAKELVEKADEYGI 152 (261)
T ss_pred eCCCCCcc-CHHHHHHHHHhCCCEEEEecCCCCC----------C-------------CCHHHHHHHHHHHHHHHHHcCC
Confidence 22332211 2478999999999999754332331 0 0112234555667777788888
Q ss_pred ChHHH
Q 019173 265 TSAQL 269 (345)
Q Consensus 265 s~~~~ 269 (345)
++.++
T Consensus 153 ~~~~I 157 (261)
T PRK07535 153 PPEDI 157 (261)
T ss_pred CHhHE
Confidence 76554
No 30
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=73.12 E-value=70 Score=29.03 Aligned_cols=101 Identities=17% Similarity=0.129 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEE-eccCCCC-CCH----HHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcCCCe
Q 019173 106 GNPEYVRSCCEASLKRLDVEYIDLYY-QHRVDTS-VPI----EETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPI 179 (345)
Q Consensus 106 ~~~~~i~~~v~~sL~~Lg~d~iDl~~-lH~~~~~-~~~----~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 179 (345)
++.+.+.+..++.+ +-|-++||+-. -.+|+.. .+. +.+...++.+++.-.+- |.+-+++++.++++++....
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~~~v~e~al~~G~~ 98 (257)
T cd00739 21 LSLDKAVAHAEKMI-AEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFRAEVARAALEAGAD 98 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCCHHHHHHHHHhCCC
Confidence 45666666655554 56889999863 3345433 122 23444556666653443 78889999999999987532
Q ss_pred eEEeccccccccccccchhhHHHhhCCeEEeec
Q 019173 180 TAVQLEWSLWTRDIENEIVPLCRELGIGIVPYS 212 (345)
Q Consensus 180 ~~~q~~~nl~~~~~~~~~l~~~~~~gi~v~a~~ 212 (345)
-+ +..+....+ .++++.++++|.+++.+.
T Consensus 99 iI--Ndisg~~~~--~~~~~l~~~~~~~vV~m~ 127 (257)
T cd00739 99 II--NDVSGGSDD--PAMLEVAAEYGAPLVLMH 127 (257)
T ss_pred EE--EeCCCCCCC--hHHHHHHHHcCCCEEEEC
Confidence 22 233333222 578999999999999844
No 31
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=72.57 E-value=31 Score=31.30 Aligned_cols=68 Identities=9% Similarity=-0.045 Sum_probs=43.1
Q ss_pred HHHHHHHcCCcceEecC-CCcHHHHHHHhcCCCeeE--EeccccccccccccchhhHHHhhCCeEEeecCCC
Q 019173 147 EMKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPITA--VQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLG 215 (345)
Q Consensus 147 ~L~~L~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~--~q~~~nl~~~~~~~~~l~~~~~~gi~v~a~~pl~ 215 (345)
.|.+-.++|+. .+|+- ..+...+.+++....+|+ +=.++++++...-..++..|+..|+..++.-|-.
T Consensus 9 ~lk~~l~~g~~-~~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~ 79 (256)
T PRK10558 9 KFKAALAAKQV-QIGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTN 79 (256)
T ss_pred HHHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 35555566875 45542 233334455555544554 4558888877655788889999999988876654
No 32
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=71.44 E-value=21 Score=34.47 Aligned_cols=82 Identities=16% Similarity=0.201 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhc-CCCCCeEEEeccccccCCccccccCCCHHHHHHHHHHH
Q 019173 40 SEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKM-LPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEAS 118 (345)
Q Consensus 40 ~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~-~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~s 118 (345)
+......++++|++.|++++|||.+.- .. ..++. ..+..+.+..-+|..+ ..+--.....+++-
T Consensus 77 p~~~~~~i~ka~i~~gv~yvDts~~~~---~~----~~~~~~a~~Agit~v~~~G~dP--------Gi~nv~a~~a~~~~ 141 (389)
T COG1748 77 PPFVDLTILKACIKTGVDYVDTSYYEE---PP----WKLDEEAKKAGITAVLGCGFDP--------GITNVLAAYAAKEL 141 (389)
T ss_pred CchhhHHHHHHHHHhCCCEEEcccCCc---hh----hhhhHHHHHcCeEEEcccCcCc--------chHHHHHHHHHHHh
Confidence 345566899999999999999997654 22 22222 2344556666666543 22222222333332
Q ss_pred HhhcCCCcccEEEeccCCCC
Q 019173 119 LKRLDVEYIDLYYQHRVDTS 138 (345)
Q Consensus 119 L~~Lg~d~iDl~~lH~~~~~ 138 (345)
.+ .+++||+|..+.|++.
T Consensus 142 ~~--~i~si~iy~g~~g~~~ 159 (389)
T COG1748 142 FD--EIESIDIYVGGLGEHG 159 (389)
T ss_pred hc--cccEEEEEEecCCCCC
Confidence 22 5799999999998776
No 33
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=71.04 E-value=26 Score=30.89 Aligned_cols=87 Identities=13% Similarity=0.069 Sum_probs=59.7
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhcCCCeeEEecccccccc-ccccchhhHHHhh
Q 019173 127 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWTR-DIENEIVPLCREL 204 (345)
Q Consensus 127 iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~nl~~~-~~~~~~l~~~~~~ 204 (345)
.++.++-.|-+..+ ++.+.+|++...+. ..+=|.++...+..++....++++|+..+..-. ..-.++...|+++
T Consensus 120 ~~i~~iEeP~~~~d----~~~~~~L~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~~~~~i~~~a~~~ 195 (229)
T cd00308 120 YGLAWIEEPCAPDD----LEGYAALRRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAF 195 (229)
T ss_pred cCCCeEECCCCccC----HHHHHHHHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHc
Confidence 46666666654433 45567777777666 334445677777777777788999987765432 1125889999999
Q ss_pred CCeEEeecCCCcc
Q 019173 205 GIGIVPYSPLGRG 217 (345)
Q Consensus 205 gi~v~a~~pl~~G 217 (345)
|+.++..+.+.+|
T Consensus 196 gi~~~~~~~~~s~ 208 (229)
T cd00308 196 GIRVMVHGTLESS 208 (229)
T ss_pred CCEEeecCCCCCH
Confidence 9999998776654
No 34
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=68.32 E-value=13 Score=32.54 Aligned_cols=67 Identities=19% Similarity=0.270 Sum_probs=45.3
Q ss_pred HHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecC-CCcHHHHHHHhcCCCeeEEeccc
Q 019173 118 SLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPITAVQLEW 186 (345)
Q Consensus 118 sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~ 186 (345)
.+..+|.|++=+.+.....+..+.+.+ ..+.+.. .+.+..+||. +.+++.+.++++...++++|+.-
T Consensus 18 ~~~~~Gad~iGfI~~~~S~R~V~~~~a-~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg 85 (210)
T PRK01222 18 AAAELGADAIGFVFYPKSPRYVSPEQA-AELAAAL-PPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHG 85 (210)
T ss_pred HHHHcCCCEEEEccCCCCCCcCCHHHH-HHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECC
Confidence 355799999998754433333444333 3333222 3568899997 56888999999889999999954
No 35
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=68.21 E-value=52 Score=28.46 Aligned_cols=145 Identities=12% Similarity=0.025 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhc----CCCCCeEEEeccccccCCccccccCCCHHHHHHHH
Q 019173 40 SEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKM----LPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCC 115 (345)
Q Consensus 40 ~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~----~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v 115 (345)
|.+++.+.++.+++.|++..|.- +..+..+++. -.+++++++-- ....+.+++.+
T Consensus 10 d~~~~~~~v~~~l~~g~~~~~i~--------~~~l~p~m~~iG~~w~~gei~va~~-------------~~a~~~~~~~l 68 (197)
T TIGR02370 10 EEDDVVEGAQKALDAGIDPIELI--------EKGLMAGMGVVGKLFEDGELFLPHV-------------MMSADAMLAGI 68 (197)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHHHcCCCccHHHH-------------HHHHHHHHHHH
Confidence 78999999999999998766532 3444445443 13334443111 12244455555
Q ss_pred HHHHhhcCCC----cccEEEeccCCCCCCHHHHHHHHHHHHHcCC-cceEecCCCcHHHHHHHhcCCCeeEEeccccccc
Q 019173 116 EASLKRLDVE----YIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWT 190 (345)
Q Consensus 116 ~~sL~~Lg~d----~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~nl~~ 190 (345)
......+... .---+++-.+..+.+--...-...-|+..|. |.++|.. -+.+.+.+.+....++++.+.++...
T Consensus 69 ~~l~~~~~~~~~~~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~-vp~e~~v~~~~~~~pd~v~lS~~~~~ 147 (197)
T TIGR02370 69 KVLTPEMEKAVETEVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRD-VPIDTVVEKVKKEKPLMLTGSALMTT 147 (197)
T ss_pred HHHHHHhhccccCCCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCC-CCHHHHHHHHHHcCCCEEEEcccccc
Confidence 5555555421 1123344444433333233333334566674 6667754 45566666667777788877766544
Q ss_pred cccc-cchhhHHHhhCC
Q 019173 191 RDIE-NEIVPLCRELGI 206 (345)
Q Consensus 191 ~~~~-~~~l~~~~~~gi 206 (345)
.-.. .++++.+++.|+
T Consensus 148 ~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 148 TMYGQKDINDKLKEEGY 164 (197)
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 4322 688888998864
No 36
>PRK06361 hypothetical protein; Provisional
Probab=67.70 E-value=82 Score=27.29 Aligned_cols=187 Identities=14% Similarity=0.073 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHH---HHHhcC-CCCCeEEEeccccccCCccccccCCCHHHHHHHHHH
Q 019173 42 EDGISIIKHAFNKGITFFDTADKYGPYTNEILLG---KALKML-PRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEA 117 (345)
Q Consensus 42 ~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG---~~l~~~-~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~ 117 (345)
....+++++|.+.|+..|=-++|.....-...+- +..++. ...++ .-..|..-. ...++. ...+.+
T Consensus 10 ~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~~~~~~~~~i--~v~~GiE~~-------~~~~~~-~~~~~~ 79 (212)
T PRK06361 10 LIPSELVRRARVLGYRAIAITDHADASNLEEILEKLVRAAEELELYWDI--EVIPGVELT-------HVPPKL-IPKLAK 79 (212)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCCCccHHHHHHHHHHHHHHHhhcCCC--EEEEEEEEc-------ccCchh-hchHHH
Confidence 4478899999999999998888754211111111 111110 11122 223332210 011222 233445
Q ss_pred HHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCC-cHHHHHHHhcCCCeeEEeccccccccccccc
Q 019173 118 SLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHAVHPITAVQLEWSLWTRDIENE 196 (345)
Q Consensus 118 sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~q~~~nl~~~~~~~~ 196 (345)
.+.+++ .|+..+|......+.. ...-.++.+.|.+.-+|=-.. ....+ +++....+ .+.+......+.....
T Consensus 80 ~~~~~~---~~~~svH~~~~~~~~~--~~~~~~a~~~~~~dvlaHpd~~~~~~~-~~~~~~~~-~lEin~~~~~~~~~~~ 152 (212)
T PRK06361 80 KARDLG---AEIVVVHGETIVEPVE--EGTNLAAIECEDVDILAHPGLITEEEA-ELAAENGV-FLEITARKGHSLTNGH 152 (212)
T ss_pred HHHHCC---CEEEEECCCCcchhhh--hhhHHHHHhCCCCcEecCcchhhHHHH-HHHHHcCe-EEEEECCCCcccchHH
Confidence 666665 5667899543322221 111245778888766654332 22233 33333221 1111111112223357
Q ss_pred hhhHHHhhCCeEEeecCCCccccCCCCCCCCCCCCCccccCCCCCccchhhhHHHHHHHHHHHHHcCCChHHHHHHHH
Q 019173 197 IVPLCRELGIGIVPYSPLGRGFFGGKAVVESVPPDSFLNFLPRFTGENLDRNRSIYFRIENLAKKYKCTSAQLALAWV 274 (345)
Q Consensus 197 ~l~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~~~al~~~ 274 (345)
+++.|++.|+.++.-+.... +......+.+..++++.|.+..++--.+.
T Consensus 153 ~l~~a~~~gi~vv~~SDaH~-----------------------------~~d~~~~~~~~~i~~~~gl~~~~v~~~~~ 201 (212)
T PRK06361 153 VARIAREAGAPLVINTDTHA-----------------------------PSDLITYEFARKVALGAGLTEKELEEALE 201 (212)
T ss_pred HHHHHHHhCCcEEEECCCCC-----------------------------HHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999876544431 11122356888889999998888765544
No 37
>PRK13796 GTPase YqeH; Provisional
Probab=66.13 E-value=1.1e+02 Score=29.28 Aligned_cols=120 Identities=14% Similarity=0.177 Sum_probs=80.5
Q ss_pred CCHHHHHHHHHHHHHcC---CCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeccccccCCccccccCCCHHHHHHHH
Q 019173 39 VSEEDGISIIKHAFNKG---ITFFDTADKYGPYTNEILLGKALKMLPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCC 115 (345)
Q Consensus 39 ~~~~~a~~~l~~A~~~G---i~~~DTA~~Yg~g~sE~~lG~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v 115 (345)
++.++..++++..-+.- +-.+|..+.-++ -...+.+... .+.-++|.+|+-..+ .....+.+.+.+
T Consensus 54 ~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s--~~~~L~~~~~--~kpviLViNK~DLl~-------~~~~~~~i~~~l 122 (365)
T PRK13796 54 LTDDDFLKLLNGIGDSDALVVNVVDIFDFNGS--WIPGLHRFVG--NNPVLLVGNKADLLP-------KSVKKNKVKNWL 122 (365)
T ss_pred CCHHHHHHHHHhhcccCcEEEEEEECccCCCc--hhHHHHHHhC--CCCEEEEEEchhhCC-------CccCHHHHHHHH
Confidence 46677777887776655 456787665443 2334444442 456688999986432 123456677777
Q ss_pred HHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHH
Q 019173 116 EASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTI 170 (345)
Q Consensus 116 ~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l 170 (345)
+...+.+|....+++.+..-. ...++++++.+.++.+.+.+--+|.+|..-..+
T Consensus 123 ~~~~k~~g~~~~~v~~vSAk~-g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTL 176 (365)
T PRK13796 123 RQEAKELGLRPVDVVLISAQK-GHGIDELLEAIEKYREGRDVYVVGVTNVGKSTL 176 (365)
T ss_pred HHHHHhcCCCcCcEEEEECCC-CCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHH
Confidence 777778886666787776543 345788889988887788899999999865443
No 38
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=65.70 E-value=1.2e+02 Score=28.38 Aligned_cols=149 Identities=15% Similarity=0.149 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeeecCCCCCCC------cHHHHHHHHHhcC-CCCCeEEEeccccccCCccccccCCCHHHH
Q 019173 39 VSEEDGISIIKHAFNKGITFFDTADKYGPY------TNEILLGKALKML-PRENIQVATKFGFAELGLDAVIVKGNPEYV 111 (345)
Q Consensus 39 ~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g------~sE~~lG~~l~~~-~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i 111 (345)
.+.++..++++.+.+.|++.|.-. | | .-.+++- .+++. .-.++.|+|-... +
T Consensus 49 ls~eei~~~i~~~~~~gi~~I~~t---G-GEPll~~~l~~li~-~i~~~~~~~~i~itTNG~l----------------l 107 (331)
T PRK00164 49 LSLEEIERLVRAFVALGVRKVRLT---G-GEPLLRKDLEDIIA-ALAALPGIRDLALTTNGYL----------------L 107 (331)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE---C-CCCcCccCHHHHHH-HHHhcCCCceEEEEcCchh----------------H
Confidence 578999999999999999877643 2 2 1122222 22221 1234556555321 1
Q ss_pred HHHHHHHHhhcCCCcccEEEeccCCC--------CCCHHHHHHHHHHHHHcCC----cceEecCCCcHHHHHHHhc---C
Q 019173 112 RSCCEASLKRLDVEYIDLYYQHRVDT--------SVPIEETIGEMKKLVEEGK----IKYIGLSEASPDTIRRAHA---V 176 (345)
Q Consensus 112 ~~~v~~sL~~Lg~d~iDl~~lH~~~~--------~~~~~~~~~~L~~L~~~G~----ir~iGvS~~~~~~l~~~~~---~ 176 (345)
.+ .-+.|...|++.|- +-||..++ ...+++++++++.+++.|. |..+.+...+.+++..+++ .
T Consensus 108 ~~-~~~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~ 185 (331)
T PRK00164 108 AR-RAAALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKD 185 (331)
T ss_pred HH-HHHHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHh
Confidence 22 22345555655442 33454432 1347889999999999985 3344444444445544433 3
Q ss_pred CCeeEEecccccccccc---------ccchhhHHHhhCCeEEe
Q 019173 177 HPITAVQLEWSLWTRDI---------ENEIVPLCRELGIGIVP 210 (345)
Q Consensus 177 ~~~~~~q~~~nl~~~~~---------~~~~l~~~~~~gi~v~a 210 (345)
.++.+.-++|.++.... ..++++..+++|+.+..
T Consensus 186 ~gv~v~~ie~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 228 (331)
T PRK00164 186 RGIQLRFIELMPTGEGNEWFRKHHLSGAEIRARLAERGWTLQP 228 (331)
T ss_pred CCCeEEEEEeeECCCCcchhhhcCCCHHHHHHHHHhccCcccc
Confidence 45555555555443210 14677777777665443
No 39
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=64.65 E-value=71 Score=29.22 Aligned_cols=67 Identities=15% Similarity=0.057 Sum_probs=41.4
Q ss_pred HHHHHHcCCcceEec-CCCcHHHHHHHhcCCCeeEE--eccccccccccccchhhHHHhhCCeEEeecCCC
Q 019173 148 MKKLVEEGKIKYIGL-SEASPDTIRRAHAVHPITAV--QLEWSLWTRDIENEIVPLCRELGIGIVPYSPLG 215 (345)
Q Consensus 148 L~~L~~~G~ir~iGv-S~~~~~~l~~~~~~~~~~~~--q~~~nl~~~~~~~~~l~~~~~~gi~v~a~~pl~ 215 (345)
|.+..++|+.- +|+ .......+.+++....||++ =.+++.++......++..|+..|+..++.-|-.
T Consensus 9 lk~~L~~G~~~-~G~~~~~~sp~~~E~~a~~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~ 78 (267)
T PRK10128 9 FKEGLRKGEVQ-IGLWLSSTTSYMAEIAATSGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEG 78 (267)
T ss_pred HHHHHHcCCce-EEEEecCCCcHHHHHHHHcCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCC
Confidence 55555667753 554 33333344454555445544 558888887655678888888898888766643
No 40
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=64.45 E-value=2.6 Score=39.93 Aligned_cols=54 Identities=17% Similarity=0.324 Sum_probs=38.3
Q ss_pred cCCcceEecCCCcHHHHHHHhcCCC-eeEEeccccccccccccchhhHHHhhCCe
Q 019173 154 EGKIKYIGLSEASPDTIRRAHAVHP-ITAVQLEWSLWTRDIENEIVPLCRELGIG 207 (345)
Q Consensus 154 ~G~ir~iGvS~~~~~~l~~~~~~~~-~~~~q~~~nl~~~~~~~~~l~~~~~~gi~ 207 (345)
-|+|||+||--++.+++.++..... -+..+.+..++....+..+++.+++.||+
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~e~dly~~Q~~ifLDP~DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTENEKDLYERQLDVFLDPHDPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCccHHHHHHHHHhhhcCCCCHHHHHHHHHcCCc
Confidence 4999999999999999988876632 23444444444433346788888888886
No 41
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=62.91 E-value=47 Score=29.32 Aligned_cols=162 Identities=17% Similarity=0.213 Sum_probs=90.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeeecC-CCCCCCcHHHHHHHHHhcCCCCCeEEEeccccccCCccccccCCCHHHHHHHHHH
Q 019173 39 VSEEDGISIIKHAFNKGITFFDTA-DKYGPYTNEILLGKALKMLPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEA 117 (345)
Q Consensus 39 ~~~~~a~~~l~~A~~~Gi~~~DTA-~~Yg~g~sE~~lG~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~ 117 (345)
.+.++..++++...+.||..|++. +..+. ...+.+....+..+. ..+++.+ +...+.++..++.
T Consensus 11 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~-~~~~~v~~~~~~~~~--~~~~~~~------------~~~~~~i~~~~~~ 75 (237)
T PF00682_consen 11 FSTEEKLEIAKALDEAGVDYIEVGFPFASE-DDFEQVRRLREALPN--ARLQALC------------RANEEDIERAVEA 75 (237)
T ss_dssp --HHHHHHHHHHHHHHTTSEEEEEHCTSSH-HHHHHHHHHHHHHHS--SEEEEEE------------ESCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEcccccCH-HHHHHhhhhhhhhcc--cccceee------------eehHHHHHHHHHh
Confidence 378999999999999999999999 33331 123344444433222 2222222 1235667776764
Q ss_pred HHhhcCCCcccEEEeccCCC---------CCCHHHHHHHHHHHHHcCCcceEecCC---CcHHHHHHHhcC---CCeeEE
Q 019173 118 SLKRLDVEYIDLYYQHRVDT---------SVPIEETIGEMKKLVEEGKIKYIGLSE---ASPDTIRRAHAV---HPITAV 182 (345)
Q Consensus 118 sL~~Lg~d~iDl~~lH~~~~---------~~~~~~~~~~L~~L~~~G~ir~iGvS~---~~~~~l~~~~~~---~~~~~~ 182 (345)
. ...|.+.+.++.--+... ...++.+.+.++.+++.|.--.+++.. ++.+.+.++.+. .+++.+
T Consensus 76 ~-~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i 154 (237)
T PF00682_consen 76 A-KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADII 154 (237)
T ss_dssp H-HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEE
T ss_pred h-HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEE
Confidence 4 567877777664322200 011345667778888899888888754 455555444333 345555
Q ss_pred ec--cccccccccccchhhHHHhh----CCeEEeecCCCc
Q 019173 183 QL--EWSLWTRDIENEIVPLCREL----GIGIVPYSPLGR 216 (345)
Q Consensus 183 q~--~~nl~~~~~~~~~l~~~~~~----gi~v~a~~pl~~ 216 (345)
.+ ....+.+..-.+++...+++ .|++..+.-++.
T Consensus 155 ~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gl 194 (237)
T PF00682_consen 155 YLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGL 194 (237)
T ss_dssp EEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-
T ss_pred EeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccc
Confidence 44 33444443225666666653 356666666653
No 42
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=62.78 E-value=1.2e+02 Score=27.33 Aligned_cols=92 Identities=17% Similarity=0.142 Sum_probs=53.9
Q ss_pred HHHHHHhhcCCCcccEEEeccCCCCCCHHH-HHHHHHHHHHcCCcceEecCC-CcHHHHHHHhcCCCeeEEecccccccc
Q 019173 114 CCEASLKRLDVEYIDLYYQHRVDTSVPIEE-TIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQLEWSLWTR 191 (345)
Q Consensus 114 ~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~-~~~~L~~L~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~nl~~~ 191 (345)
.+-+.|+++| +|.+.+|..+....... -++.+.++++.-.+.-|.... .+.+.+.+++.....+.+.+---+...
T Consensus 159 ~~~~~l~~~G---~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~ 235 (254)
T TIGR00735 159 EWAKEVEKLG---AGEILLTSMDKDGTKSGYDLELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYR 235 (254)
T ss_pred HHHHHHHHcC---CCEEEEeCcCcccCCCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCC
Confidence 3444456666 56777777655321111 145556666665666666655 467788888877656665442112222
Q ss_pred cc-ccchhhHHHhhCCeE
Q 019173 192 DI-ENEIVPLCRELGIGI 208 (345)
Q Consensus 192 ~~-~~~~l~~~~~~gi~v 208 (345)
.. ..++.+.|++.||.+
T Consensus 236 ~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 236 EITIGEVKEYLAERGIPV 253 (254)
T ss_pred CCCHHHHHHHHHHCCCcc
Confidence 11 268899999999875
No 43
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=62.77 E-value=1.2e+02 Score=27.40 Aligned_cols=102 Identities=17% Similarity=0.132 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEE-eccCCCC-----CCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcCCCe
Q 019173 106 GNPEYVRSCCEASLKRLDVEYIDLYY-QHRVDTS-----VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPI 179 (345)
Q Consensus 106 ~~~~~i~~~v~~sL~~Lg~d~iDl~~-lH~~~~~-----~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~ 179 (345)
.+.+.+.+..++.+ .-|-++||+-. --+|+.. ..++.+...++.+++.-.+- |.+.+++++.++++++....
T Consensus 21 ~~~~~~~~~a~~~~-~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~p-iSIDT~~~~v~~aaL~~g~~ 98 (258)
T cd00423 21 LSLDKALEHARRMV-EEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVP-ISVDTFNAEVAEAALKAGAD 98 (258)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCe-EEEeCCcHHHHHHHHHhCCC
Confidence 45667777666654 67889999964 3445431 11234566667666553333 88899999999999987632
Q ss_pred eEEeccccccccccccchhhHHHhhCCeEEeecC
Q 019173 180 TAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSP 213 (345)
Q Consensus 180 ~~~q~~~nl~~~~~~~~~l~~~~~~gi~v~a~~p 213 (345)
-++ .-+....+ .++++.++++|.+++.+..
T Consensus 99 iIN--dis~~~~~--~~~~~l~~~~~~~vV~m~~ 128 (258)
T cd00423 99 IIN--DVSGGRGD--PEMAPLAAEYGAPVVLMHM 128 (258)
T ss_pred EEE--eCCCCCCC--hHHHHHHHHcCCCEEEECc
Confidence 222 23333221 4789999999999998654
No 44
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=62.57 E-value=31 Score=29.89 Aligned_cols=103 Identities=15% Similarity=0.152 Sum_probs=68.0
Q ss_pred HHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcC--CCeeEEecccccccc
Q 019173 114 CCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV--HPITAVQLEWSLWTR 191 (345)
Q Consensus 114 ~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~--~~~~~~q~~~nl~~~ 191 (345)
.+++-|..+.-+.+|.+.+..-= .........|+++.+=|+---|++.||..+.....+-. .-|..-.++|+-++.
T Consensus 63 Dld~gL~~f~d~sFD~VIlsqtL--Q~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdT 140 (193)
T PF07021_consen 63 DLDEGLADFPDQSFDYVILSQTL--QAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDT 140 (193)
T ss_pred CHHHhHhhCCCCCccEEehHhHH--HhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCC
Confidence 34555666666666766664421 11223345577888888888899999988766544332 224555677776664
Q ss_pred cc-----ccchhhHHHhhCCeEEeecCCCccc
Q 019173 192 DI-----ENEIVPLCRELGIGIVPYSPLGRGF 218 (345)
Q Consensus 192 ~~-----~~~~l~~~~~~gi~v~a~~pl~~G~ 218 (345)
.. -.+..++|++.||.|.-..++..+.
T Consensus 141 PNih~~Ti~DFe~lc~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 141 PNIHLCTIKDFEDLCRELGIRIEERVFLDGGR 172 (193)
T ss_pred CCcccccHHHHHHHHHHCCCEEEEEEEEcCCC
Confidence 31 1688999999999999998888653
No 45
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=61.93 E-value=1.3e+02 Score=28.39 Aligned_cols=94 Identities=14% Similarity=0.204 Sum_probs=53.2
Q ss_pred HHHhhcCCCcccEEEecc-CCC-CCCHHHHHHHHHHHHHcCCcce-EecCCC---cHHHHHHHhcCCC---eeEEecccc
Q 019173 117 ASLKRLDVEYIDLYYQHR-VDT-SVPIEETIGEMKKLVEEGKIKY-IGLSEA---SPDTIRRAHAVHP---ITAVQLEWS 187 (345)
Q Consensus 117 ~sL~~Lg~d~iDl~~lH~-~~~-~~~~~~~~~~L~~L~~~G~ir~-iGvS~~---~~~~l~~~~~~~~---~~~~q~~~n 187 (345)
+.-+.+|.|+||+-+.-. |+. +...++....++...+.=.+=- |..|.. +++.++++++... +-++-+ +
T Consensus 83 ~q~~~~GAd~Idl~~~s~dp~~~d~~~~e~~~~Vk~V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSa--t 160 (319)
T PRK04452 83 KCVEEYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSA--E 160 (319)
T ss_pred HHHHHhCCCEEEEECCCCCcccccchHHHHHHHHHHHHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEEC--C
Confidence 334588888888876432 322 2234444444444433322222 555532 6788888776632 222222 1
Q ss_pred ccccccccchhhHHHhhCCeEEeecCCC
Q 019173 188 LWTRDIENEIVPLCRELGIGIVPYSPLG 215 (345)
Q Consensus 188 l~~~~~~~~~l~~~~~~gi~v~a~~pl~ 215 (345)
. .-...+.+.|+++|..|++.+|..
T Consensus 161 ~---en~~~i~~lA~~y~~~Vva~s~~D 185 (319)
T PRK04452 161 E---DNYKKIAAAAMAYGHAVIAWSPLD 185 (319)
T ss_pred H---HHHHHHHHHHHHhCCeEEEEcHHH
Confidence 1 113689999999999999987653
No 46
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=61.79 E-value=43 Score=27.36 Aligned_cols=63 Identities=10% Similarity=0.176 Sum_probs=45.1
Q ss_pred CCCCeEEEeccccccCCccccccCCCHHHHHHHHHHHHhhcC--CCcccEEEeccCCCCCCHHHHHHHHHHHHHc
Q 019173 82 PRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEASLKRLD--VEYIDLYYQHRVDTSVPIEETIGEMKKLVEE 154 (345)
Q Consensus 82 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg--~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~ 154 (345)
.|=-+.|+-|+|. ...++.|++.+.++++... ....|++++.......++.++...|..+.++
T Consensus 46 ~RlG~sVSKKvg~----------AV~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 46 CKVGITVSKKFGK----------AHQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred ceEEEEEeccccc----------chhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 3445677777663 2457778888888877663 3468999999988777788887777777665
No 47
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=61.61 E-value=70 Score=28.89 Aligned_cols=66 Identities=9% Similarity=-0.069 Sum_probs=40.1
Q ss_pred HHHHHcCCcceEec-CCCcHHHHHHHhcCCCee--EEeccccccccccccchhhHHHhhCCeEEeecCCC
Q 019173 149 KKLVEEGKIKYIGL-SEASPDTIRRAHAVHPIT--AVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLG 215 (345)
Q Consensus 149 ~~L~~~G~ir~iGv-S~~~~~~l~~~~~~~~~~--~~q~~~nl~~~~~~~~~l~~~~~~gi~v~a~~pl~ 215 (345)
.+-.++|+. .+|+ .+.+...+.+++....+| ++=.++++++...-..++..|+..|+..++.-|-.
T Consensus 4 k~~l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~ 72 (249)
T TIGR03239 4 RQDLLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWN 72 (249)
T ss_pred HHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 334445664 3554 233333444555554455 44558888877644678888888998888866654
No 48
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=60.31 E-value=49 Score=29.78 Aligned_cols=109 Identities=20% Similarity=0.220 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHH--------------------HhcCCCCCeEEEeccccccCC
Q 019173 39 VSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKA--------------------LKMLPRENIQVATKFGFAELG 98 (345)
Q Consensus 39 ~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~--------------------l~~~~R~~~~i~tK~~~~~~~ 98 (345)
.+.++-.++.+++-+.||.||=|.-.-. +-..+-+. +.. ...-++|+|=.
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~---s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~-tgkPvIlSTG~------ 122 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEE---SVDFLEELGVPAYKIASGDLTNLPLLEYIAK-TGKPVILSTGM------ 122 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHH---HHHHHHHHT-SEEEE-GGGTT-HHHHHHHHT-T-S-EEEE-TT------
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHH---HHHHHHHcCCCEEEeccccccCHHHHHHHHH-hCCcEEEECCC------
Confidence 4789999999999999999998764322 22222111 111 12223333322
Q ss_pred ccccccCCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCC-CCHHH-HHHHHHHHHHcCCcceEecCCCcHH
Q 019173 99 LDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTS-VPIEE-TIGEMKKLVEEGKIKYIGLSEASPD 168 (345)
Q Consensus 99 ~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~-~~~~~-~~~~L~~L~~~G~ir~iGvS~~~~~ 168 (345)
.+.+.|+++++-..++-+ -++.++|+...+ .+.++ -+..+..|++.=- --||+|.|+..
T Consensus 123 -------stl~EI~~Av~~~~~~~~---~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~g 183 (241)
T PF03102_consen 123 -------STLEEIERAVEVLREAGN---EDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTDG 183 (241)
T ss_dssp ---------HHHHHHHHHHHHHHCT-----EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SSS
T ss_pred -------CCHHHHHHHHHHHHhcCC---CCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCCC
Confidence 246777777777645544 689999998654 34444 3667777775433 46899998754
No 49
>PTZ00413 lipoate synthase; Provisional
Probab=59.27 E-value=1.8e+02 Score=28.23 Aligned_cols=159 Identities=13% Similarity=0.198 Sum_probs=86.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeeecCCCCCC----CcHHHHHHHHHhcCC--CCCeEEEeccccccCCccccccCCCHHHHH
Q 019173 39 VSEEDGISIIKHAFNKGITFFDTADKYGP----YTNEILLGKALKMLP--RENIQVATKFGFAELGLDAVIVKGNPEYVR 112 (345)
Q Consensus 39 ~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~----g~sE~~lG~~l~~~~--R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~ 112 (345)
.|.++..++-+++.+.|++|+=.+...++ |.. ..+-+.++.+. ..++-|..=++-.. .+.+.++
T Consensus 177 lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga-~~~a~~I~~Ir~~~p~~~IevligDf~---------g~~e~l~ 246 (398)
T PTZ00413 177 LDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGA-SHVARCVELIKESNPELLLEALVGDFH---------GDLKSVE 246 (398)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhH-HHHHHHHHHHHccCCCCeEEEcCCccc---------cCHHHHH
Confidence 58999999999999999987643333332 222 34444555422 23455555444210 1233333
Q ss_pred HHHHHHHhhcCCCcccEEEeccCCC-----------CCCHHHHHHHHHHHHHc--CCcce-----EecCCCcHHHHHHHh
Q 019173 113 SCCEASLKRLDVEYIDLYYQHRVDT-----------SVPIEETIGEMKKLVEE--GKIKY-----IGLSEASPDTIRRAH 174 (345)
Q Consensus 113 ~~v~~sL~~Lg~d~iDl~~lH~~~~-----------~~~~~~~~~~L~~L~~~--G~ir~-----iGvS~~~~~~l~~~~ 174 (345)
+ |..-| +|.|- |+.+. ...+++.++.|+..++. |.|.- +|+.....+.++-+.
T Consensus 247 ~-----L~eAG---~dvyn-HNLETv~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi~tcSGiIVGLGET~eEvie~m~ 317 (398)
T PTZ00413 247 K-----LANSP---LSVYA-HNIECVERITPYVRDRRASYRQSLKVLEHVKEFTNGAMLTKSSIMLGLGETEEEVRQTLR 317 (398)
T ss_pred H-----HHhcC---CCEEe-cccccCHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCceEeeeeEecCCCCHHHHHHHHH
Confidence 2 22233 34332 66432 13578889999988874 33322 566665555443333
Q ss_pred cC--CCeeEEec-ccc-------ccc----cccccchhhHHHhhCCeEEeecCCCc
Q 019173 175 AV--HPITAVQL-EWS-------LWT----RDIENEIVPLCRELGIGIVPYSPLGR 216 (345)
Q Consensus 175 ~~--~~~~~~q~-~~n-------l~~----~~~~~~~l~~~~~~gi~v~a~~pl~~ 216 (345)
.. ..++++.+ +|= .+. ++....+-+.+.+.|...++-+||-.
T Consensus 318 dLrelGVDivtIGQYL~Ps~~h~~V~~yv~P~~F~~~~~~a~~~Gf~~v~sgPlVR 373 (398)
T PTZ00413 318 DLRTAGVSAVTLGQYLQPTKTRLKVSRYAHPKEFEMWEEEAMKMGFLYCASGPLVR 373 (398)
T ss_pred HHHHcCCcEEeeccccCCCcccCCceeccCHHHHHHHHHHHHHcCCceEEecCccc
Confidence 22 33444433 221 111 11126777888899999999999874
No 50
>smart00642 Aamy Alpha-amylase domain.
Probab=58.13 E-value=11 Score=31.69 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=18.0
Q ss_pred ccchhhHHHhhCCeEEeecCCC
Q 019173 194 ENEIVPLCRELGIGIVPYSPLG 215 (345)
Q Consensus 194 ~~~~l~~~~~~gi~v~a~~pl~ 215 (345)
...+++.|+++||.|+.=-++.
T Consensus 72 ~~~lv~~~h~~Gi~vilD~V~N 93 (166)
T smart00642 72 FKELVDAAHARGIKVILDVVIN 93 (166)
T ss_pred HHHHHHHHHHCCCEEEEEECCC
Confidence 3799999999999999755554
No 51
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=57.82 E-value=54 Score=28.96 Aligned_cols=82 Identities=15% Similarity=0.253 Sum_probs=53.8
Q ss_pred CcHHHHHHHhcCCCeeEEec----cccccccccc---cchhhHHHhhCCeEEeecCCCccccCCCCCCCCCCCCCccccC
Q 019173 165 ASPDTIRRAHAVHPITAVQL----EWSLWTRDIE---NEIVPLCRELGIGIVPYSPLGRGFFGGKAVVESVPPDSFLNFL 237 (345)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~q~----~~nl~~~~~~---~~~l~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~ 237 (345)
.+++++..+.+...+.++-+ +||.+..... .++.++++.-|-.-+..-|+..|-..+..
T Consensus 49 ~p~a~vka~Aek~Gl~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s~~~~~-------------- 114 (272)
T COG4130 49 TPAAEVKALAEKAGLTIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGSWPGTA-------------- 114 (272)
T ss_pred CCHHHHHHHHHHcCcEEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCCCCCcc--------------
Confidence 34566666666655544433 5666664321 68999999999999999999876432221
Q ss_pred CCCCccchhhhHHHHHHHHHHHHHcCCC
Q 019173 238 PRFTGENLDRNRSIYFRIENLAKKYKCT 265 (345)
Q Consensus 238 ~~~~~~~~~~~~~~~~~l~~ia~~~g~s 265 (345)
........++++|+.|-.++|++
T Consensus 115 -----vr~~~lv~AlkaLkpil~~~gi~ 137 (272)
T COG4130 115 -----VRREDLVEALKALKPILDEYGIT 137 (272)
T ss_pred -----cchHHHHHHHHHhhHHHHHhCcc
Confidence 01134467778888888888863
No 52
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=57.72 E-value=1.2e+02 Score=26.98 Aligned_cols=152 Identities=13% Similarity=0.000 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEe--ccccc-----cCCccccccCCCHHHHH
Q 019173 40 SEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLPRENIQVAT--KFGFA-----ELGLDAVIVKGNPEYVR 112 (345)
Q Consensus 40 ~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~R~~~~i~t--K~~~~-----~~~~~~~~~~~~~~~i~ 112 (345)
+.+++.+++. .|...+..+...-. +-..+.+..+....+++.++. |.+.. ...+ ....+....
T Consensus 82 s~~d~~~~l~----~G~~~v~ig~~~~~--~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~---~~~~~~~~~- 151 (243)
T cd04731 82 SLEDARRLLR----AGADKVSINSAAVE--NPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHG---GRKPTGLDA- 151 (243)
T ss_pred CHHHHHHHHH----cCCceEEECchhhh--ChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcC---CceecCCCH-
Confidence 5666666554 58887776654332 345556655543334454442 21110 0000 000111111
Q ss_pred HHHHHHHhhcCCCcccEEEeccCCCCCCHH-HHHHHHHHHHHcCCcceEecCC-CcHHHHHHHhcCCCeeEEeccccccc
Q 019173 113 SCCEASLKRLDVEYIDLYYQHRVDTSVPIE-ETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQLEWSLWT 190 (345)
Q Consensus 113 ~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~-~~~~~L~~L~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~nl~~ 190 (345)
..+-+.++.+| +|.+.+|..+...... --++.+.++++.-.+.-|.... .+.+.+.++++....+.+++---+..
T Consensus 152 ~~~~~~l~~~G---~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~ 228 (243)
T cd04731 152 VEWAKEVEELG---AGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHF 228 (243)
T ss_pred HHHHHHHHHCC---CCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHc
Confidence 22334456666 5566666654421111 0245556666655666665554 36677887777666666665333322
Q ss_pred ccc-ccchhhHHHhh
Q 019173 191 RDI-ENEIVPLCREL 204 (345)
Q Consensus 191 ~~~-~~~~l~~~~~~ 204 (345)
... ..++...|+++
T Consensus 229 ~~~~~~~~~~~~~~~ 243 (243)
T cd04731 229 GEYTIAELKEYLAER 243 (243)
T ss_pred CCCCHHHHHHHHhhC
Confidence 221 14556666553
No 53
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=57.46 E-value=94 Score=27.99 Aligned_cols=65 Identities=15% Similarity=0.046 Sum_probs=35.7
Q ss_pred HHHHHHcCCcceEec--CCCcHHHHHHHhcC-CCeeEEeccccccccccccchhhHHHhhCCeEEeecC
Q 019173 148 MKKLVEEGKIKYIGL--SEASPDTIRRAHAV-HPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSP 213 (345)
Q Consensus 148 L~~L~~~G~ir~iGv--S~~~~~~l~~~~~~-~~~~~~q~~~nl~~~~~~~~~l~~~~~~gi~v~a~~p 213 (345)
|.+..++|+. -+|+ ...++..++.+... ..+.++=.++++++...-..++..|+..|+.+++.-|
T Consensus 3 lk~~l~~g~~-~~g~~~~~~~p~~~e~~~~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~ 70 (249)
T TIGR02311 3 FKQALKEGQP-QIGLWLGLADPYAAEICAGAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPA 70 (249)
T ss_pred HHHHHHCCCc-eEEEEEeCCCcHHHHHHHhcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECC
Confidence 4455566775 3444 33344444444333 2344445578876554334567777777877776543
No 54
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=57.15 E-value=73 Score=29.85 Aligned_cols=107 Identities=15% Similarity=0.184 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeccccccCCccccccCCCHHHHHHHHHHHHhh
Q 019173 42 EDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEASLKR 121 (345)
Q Consensus 42 ~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~ 121 (345)
..-+++++.+-++|| .||.|.. |++.+=+++.- .+..+|+|...... ..++.++--.++++...++
T Consensus 149 ~~Gk~lV~~~N~LgI-iiDlSH~-----s~kt~~Dvl~~--s~~PviaSHSN~~a------l~~h~RNl~D~qlkaI~~~ 214 (313)
T COG2355 149 PFGKELVREMNELGI-IIDLSHL-----SDKTFWDVLDL--SKAPVVASHSNARA------LVDHPRNLSDEQLKAIAET 214 (313)
T ss_pred HHHHHHHHHHHhcCC-EEEeccc-----CCccHHHHHhc--cCCceEEecCCchh------ccCCCCCCCHHHHHHHHhc
Confidence 346899999999999 9999964 67777777754 56678888776542 2234444455566666665
Q ss_pred cCCCcccEEEeccCC-----CCCCHHHHHHHHHHHHHcCCcceEecCC
Q 019173 122 LDVEYIDLYYQHRVD-----TSVPIEETIGEMKKLVEEGKIKYIGLSE 164 (345)
Q Consensus 122 Lg~d~iDl~~lH~~~-----~~~~~~~~~~~L~~L~~~G~ir~iGvS~ 164 (345)
=|+ |.+-++-..- ...+++++.+.++.+++.+=+++||+..
T Consensus 215 gGv--Igv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGs 260 (313)
T COG2355 215 GGV--IGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGS 260 (313)
T ss_pred CCE--EEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcCcceeEecc
Confidence 553 4444432221 3457899999999999999999999975
No 55
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=55.04 E-value=1.7e+02 Score=26.75 Aligned_cols=108 Identities=9% Similarity=-0.068 Sum_probs=66.1
Q ss_pred ccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeecC-CCCCCCcHHHHHHHHHhcCCCCCeEEEeccccccCCccc
Q 019173 23 KLGFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTA-DKYGPYTNEILLGKALKMLPRENIQVATKFGFAELGLDA 101 (345)
Q Consensus 23 ~lg~G~~~~g~~~~~~~~~~~a~~~l~~A~~~Gi~~~DTA-~~Yg~g~sE~~lG~~l~~~~R~~~~i~tK~~~~~~~~~~ 101 (345)
.||.+.|+...+-+..-+++...+-..+.+...+|.++-- ..|.. .+++.+-+|.++ ..+++..+.|+.-.-.
T Consensus 4 ~IG~sGW~~~~w~~~~yp~~~~~~~~L~~y~~~f~~VEiN~TFYa~-p~~~t~~~W~~~-~p~~FrFsvK~~~~iT---- 77 (263)
T COG1801 4 YIGTSGWSYPDWEGLFYPEGLKKKEFLAYYASHFNTVEINSTFYAP-PSPETVLRWAEE-TPDDFRFSVKAPRAIT---- 77 (263)
T ss_pred EEeecCCCcccccccccCcccchhhHHHHHhccCCEEEECCcccCC-CCHHHHHHHHHh-CCCCeEEEEEeccccc----
Confidence 4677777765432322223233333444555567777753 35543 478888889886 8999999999863210
Q ss_pred cccCCCH---HHHHHHHHHHHhhcCCCcccEEEeccCCCC
Q 019173 102 VIVKGNP---EYVRSCCEASLKRLDVEYIDLYYQHRVDTS 138 (345)
Q Consensus 102 ~~~~~~~---~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~ 138 (345)
..+.+. ..+.+.+.+-++.|| +.+..+++.-|..-
T Consensus 78 -H~~~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Ppsf 115 (263)
T COG1801 78 -HQRRLKECDFELWEFFLEPLAPLG-ERLGPILFQLPPSF 115 (263)
T ss_pred -chhhhccchHHHHHHHHHHHHhhh-cccceEEEecCCcc
Confidence 011122 455566666677887 68999999888654
No 56
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=52.10 E-value=1.9e+02 Score=26.59 Aligned_cols=152 Identities=13% Similarity=0.098 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHHcC-CCeeec---CCCCC-----CCcHHHHHHHHHhcCCC-CCeEEEeccccccCCccccccCCCHH
Q 019173 40 SEEDGISIIKHAFNKG-ITFFDT---ADKYG-----PYTNEILLGKALKMLPR-ENIQVATKFGFAELGLDAVIVKGNPE 109 (345)
Q Consensus 40 ~~~~a~~~l~~A~~~G-i~~~DT---A~~Yg-----~g~sE~~lG~~l~~~~R-~~~~i~tK~~~~~~~~~~~~~~~~~~ 109 (345)
+.++..+..+.+.+.| +..||- +++.. .+...+.+-+.++...+ -++-|..|+.+. .+
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~------------~~ 169 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPN------------VT 169 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCC------------ch
Confidence 6788888888888998 999985 33221 22455666666665221 156788888642 11
Q ss_pred HHHHHHHHHHhhcCCCcccEEE-eccC--CCCC--C--------------HHHHHHHHHHHHHcCCcceEecCCC-cHHH
Q 019173 110 YVRSCCEASLKRLDVEYIDLYY-QHRV--DTSV--P--------------IEETIGEMKKLVEEGKIKYIGLSEA-SPDT 169 (345)
Q Consensus 110 ~i~~~v~~sL~~Lg~d~iDl~~-lH~~--~~~~--~--------------~~~~~~~L~~L~~~G~ir~iGvS~~-~~~~ 169 (345)
.+ ..+-+.|+..|.|.|++.- ++.. +... + ..-.++.+.++++.=.+--||+... +.+.
T Consensus 170 ~~-~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~d 248 (301)
T PRK07259 170 DI-VEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAED 248 (301)
T ss_pred hH-HHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHH
Confidence 22 3445568888877776531 1111 0000 0 0013556666666546788888884 7788
Q ss_pred HHHHhcCCCeeEEecccccccccc------ccchhhHHHhhCC
Q 019173 170 IRRAHAVHPITAVQLEWSLWTRDI------ENEIVPLCRELGI 206 (345)
Q Consensus 170 l~~~~~~~~~~~~q~~~nl~~~~~------~~~~l~~~~~~gi 206 (345)
..+++... .+.+|+---++. ++ ..++-.++.++|.
T Consensus 249 a~~~l~aG-Ad~V~igr~ll~-~P~~~~~i~~~l~~~~~~~g~ 289 (301)
T PRK07259 249 AIEFIMAG-ASAVQVGTANFY-DPYAFPKIIEGLEAYLDKYGI 289 (301)
T ss_pred HHHHHHcC-CCceeEcHHHhc-CcHHHHHHHHHHHHHHHHcCC
Confidence 88877644 688887333222 22 1466666666664
No 57
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=52.10 E-value=71 Score=27.04 Aligned_cols=97 Identities=12% Similarity=0.067 Sum_probs=63.2
Q ss_pred cCCCeeecCC--------CCCCCcHHHHHHHHHhcCCCCCeEEEeccc-cccCCcc-ccccCCCHHHHHHHHHHHHhhcC
Q 019173 54 KGITFFDTAD--------KYGPYTNEILLGKALKMLPRENIQVATKFG-FAELGLD-AVIVKGNPEYVRSCCEASLKRLD 123 (345)
Q Consensus 54 ~Gi~~~DTA~--------~Yg~g~sE~~lG~~l~~~~R~~~~i~tK~~-~~~~~~~-~~~~~~~~~~i~~~v~~sL~~Lg 123 (345)
.+|-++||-. .| .|+.+..+-..+.+ .|-++.|.++-- ++..+|. ......++..+.+-+++.|++-+
T Consensus 79 ~~v~fiDTD~itT~~~~~~y-~gr~~P~~~~~i~~-~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L~~~~ 156 (187)
T COG3172 79 NKVAFIDTDFLTTQAFCKKY-EGREHPFLQALIAE-YRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQMLEENN 156 (187)
T ss_pred CceEEEeccHHHHHHHHHHH-cccCCchHHHHHhh-cccceEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHHHHhC
Confidence 4899999843 33 24456666677777 788887776653 2233331 11122357888899999999998
Q ss_pred CCcccEEEeccCCCCCCHHHHHHHHHHHHHcC
Q 019173 124 VEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG 155 (345)
Q Consensus 124 ~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G 155 (345)
..|+ .|..++........+++.+++...+
T Consensus 157 ~~~v---~i~~~~y~eR~~~~~~aV~ell~~~ 185 (187)
T COG3172 157 IPFV---VIEGEDYLERYLQAVEAVEELLGEK 185 (187)
T ss_pred CcEE---EEcCCCHHHHHHHHHHHHHHHHhcc
Confidence 6553 4555555555667788888888776
No 58
>PLN02389 biotin synthase
Probab=50.56 E-value=2.4e+02 Score=27.19 Aligned_cols=101 Identities=18% Similarity=0.168 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHHcCCCeeecCCCC-C-CC--cHHHHHHHHHhcCCCCCeEEEeccccccCCccccccCCCHHHHHHH
Q 019173 39 VSEEDGISIIKHAFNKGITFFDTADKY-G-PY--TNEILLGKALKMLPRENIQVATKFGFAELGLDAVIVKGNPEYVRSC 114 (345)
Q Consensus 39 ~~~~~a~~~l~~A~~~Gi~~~DTA~~Y-g-~g--~sE~~lG~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 114 (345)
.+.++..+.++.+.+.|++.|--.... + .+ ..-..+-+.++......+.|....|.. .+.
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~l----------------~~E 179 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGML----------------EKE 179 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCCC----------------CHH
Confidence 588999999999999999987432111 1 11 122455555555333334455444421 233
Q ss_pred HHHHHhhcCCCcccEEEecc-C------CCCCCHHHHHHHHHHHHHcCC
Q 019173 115 CEASLKRLDVEYIDLYYQHR-V------DTSVPIEETIGEMKKLVEEGK 156 (345)
Q Consensus 115 v~~sL~~Lg~d~iDl~~lH~-~------~~~~~~~~~~~~L~~L~~~G~ 156 (345)
.-+.|+..|+|++-+-+ .. + -....+++.++.++.+++.|.
T Consensus 180 ~l~~LkeAGld~~~~~L-eTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 180 QAAQLKEAGLTAYNHNL-DTSREYYPNVITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred HHHHHHHcCCCEEEeee-cCChHHhCCcCCCCCHHHHHHHHHHHHHcCC
Confidence 33345566766543311 10 0 012357888999999999985
No 59
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=49.97 E-value=21 Score=28.91 Aligned_cols=25 Identities=36% Similarity=0.595 Sum_probs=21.2
Q ss_pred cccccchhhHHHhhCCeEEeecCCC
Q 019173 191 RDIENEIVPLCRELGIGIVPYSPLG 215 (345)
Q Consensus 191 ~~~~~~~l~~~~~~gi~v~a~~pl~ 215 (345)
++...++++.|+++||.|++|-.+.
T Consensus 43 ~Dllge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 43 RDLLGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred cCHHHHHHHHHHHCCCEEEEEEeee
Confidence 3444799999999999999988876
No 60
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=49.42 E-value=1.1e+02 Score=26.35 Aligned_cols=46 Identities=15% Similarity=0.131 Sum_probs=28.3
Q ss_pred HHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHH
Q 019173 118 SLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTI 170 (345)
Q Consensus 118 sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l 170 (345)
....++ +|.++||..++ . +..+.+.+......++.+|++......+
T Consensus 68 ia~~~~---~d~Vqlhg~e~---~-~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 68 IAEELG---LDVVQLHGDES---P-EYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred HHHhcC---CCEEEECCCCC---H-HHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 344455 79999998642 2 2334444333356889999998765443
No 61
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=49.34 E-value=2e+02 Score=25.94 Aligned_cols=106 Identities=11% Similarity=0.019 Sum_probs=62.3
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcCCCeeEEec
Q 019173 105 KGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQL 184 (345)
Q Consensus 105 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~ 184 (345)
..+++.+.+..++.++ -|.|+||+-. .|......++.-+.+..+++.-.+ -|.|-+++++.++++++...=..+-+
T Consensus 22 ~~~~d~~~~~A~~~~~-~GAdiIDIG~--~~~~~~~~ee~~r~v~~i~~~~~~-piSIDT~~~~v~e~aL~~~~G~~iIN 97 (252)
T cd00740 22 AEDYDEALDVARQQVE-GGAQILDLNV--DYGGLDGVSAMKWLLNLLATEPTV-PLMLDSTNWEVIEAGLKCCQGKCVVN 97 (252)
T ss_pred cCCHHHHHHHHHHHHH-CCCCEEEECC--CCCCCCHHHHHHHHHHHHHHhcCC-cEEeeCCcHHHHHHHHhhCCCCcEEE
Confidence 3567778887777765 5999999865 233222223333333323322122 37788899999999988621122223
Q ss_pred cccccccc-cccchhhHHHhhCCeEEeecCC
Q 019173 185 EWSLWTRD-IENEIVPLCRELGIGIVPYSPL 214 (345)
Q Consensus 185 ~~nl~~~~-~~~~~l~~~~~~gi~v~a~~pl 214 (345)
..+....+ ...++++.++++|.+++.+..-
T Consensus 98 sIs~~~~~e~~~~~~~~~~~~~~~vV~m~~~ 128 (252)
T cd00740 98 SINLEDGEERFLKVARLAKEHGAAVVVLAFD 128 (252)
T ss_pred eCCCCCCccccHHHHHHHHHhCCCEEEeccC
Confidence 33333211 1257789999999999886543
No 62
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=49.05 E-value=91 Score=31.53 Aligned_cols=99 Identities=14% Similarity=0.069 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEec----CCC--cHHHHHHHhcCCCeeEE
Q 019173 109 EYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGL----SEA--SPDTIRRAHAVHPITAV 182 (345)
Q Consensus 109 ~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGv----S~~--~~~~l~~~~~~~~~~~~ 182 (345)
+.+.+-++..++..+-.+.+--.+---.....+.++++-|.+++++|+||.+.+ ++- ....+....+..|=+++
T Consensus 360 ~~~~~vIe~A~e~~~~r~~~~~~ivvGFs~~~il~a~d~lielI~sGkIKgv~~v~GCd~~~~~~~yvt~~keliprD~l 439 (576)
T COG1151 360 EDFSEVIEMAIENFKNRKSEKHKIVVGFSHESILAAADPLIELIASGKIKGVVVVVGCDGLRSGRHYVTLFKELIPRDIL 439 (576)
T ss_pred hhHHHHHHHHHhccCCcccccceeEEeecHHHHHHHHHHHHHHHhcCCcceEEEEeeCCCCCCCcccHHHHHHhcccceE
Confidence 677888889999888777761110000011224566778899999999999843 331 11233334443333333
Q ss_pred eccccccccccccchhhHHHhhCCeEE
Q 019173 183 QLEWSLWTRDIENEIVPLCRELGIGIV 209 (345)
Q Consensus 183 q~~~nl~~~~~~~~~l~~~~~~gi~v~ 209 (345)
-+... .-...-..+++|...||+-+
T Consensus 440 VLt~G--Cgk~~~~~~~vc~~lGIPpV 464 (576)
T COG1151 440 VLTLG--CGKYRFNKADVGDILGIPRV 464 (576)
T ss_pred EEecc--cchhhhhhhccccccCCCcc
Confidence 22111 11111233478888888744
No 63
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=48.66 E-value=2.1e+02 Score=27.97 Aligned_cols=86 Identities=12% Similarity=-0.004 Sum_probs=59.2
Q ss_pred cEEEeccCCCCCCHHHHHHHHHHHHHc------CCcceEecCCCcHHHHHHHhcCCCeeEEecccccccc-ccccchhhH
Q 019173 128 DLYYQHRVDTSVPIEETIGEMKKLVEE------GKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWTR-DIENEIVPL 200 (345)
Q Consensus 128 Dl~~lH~~~~~~~~~~~~~~L~~L~~~------G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~nl~~~-~~~~~~l~~ 200 (345)
++ ++-.|-+..+.++-++.+.+|++. ..=-..+=|.++.+.+.+++.....+++|+..+-+-. ..-.++..+
T Consensus 265 ~~-~iEqPv~~~d~~~~~e~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt~a~kia~l 343 (408)
T TIGR01502 265 HL-RIEGPMDVGSRQAQIEAMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVNNIARAIMY 343 (408)
T ss_pred Ce-EEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHHHHHHHHHH
Confidence 44 777775544434456777777765 2222334456788899999888888999997774321 112689999
Q ss_pred HHhhCCeEEeecCC
Q 019173 201 CRELGIGIVPYSPL 214 (345)
Q Consensus 201 ~~~~gi~v~a~~pl 214 (345)
|+++||.++..+..
T Consensus 344 A~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 344 CKANGMGAYVGGTC 357 (408)
T ss_pred HHHcCCEEEEeCCC
Confidence 99999999987665
No 64
>PHA02128 hypothetical protein
Probab=47.98 E-value=53 Score=25.40 Aligned_cols=70 Identities=14% Similarity=0.230 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhc-----------------C-CCeeEEec---cccccccccccchhhH
Q 019173 142 EETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHA-----------------V-HPITAVQL---EWSLWTRDIENEIVPL 200 (345)
Q Consensus 142 ~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~-----------------~-~~~~~~q~---~~nl~~~~~~~~~l~~ 200 (345)
..++.-..+++.+|-+|-|-+..-+-.+++.... . ..+.+.++ +|.+-.+....+++++
T Consensus 60 ~gl~~lane~~aqgg~r~itmn~ankrhv~dmv~~~wrgdi~ist~selt~~cp~vkflmideseytltsrh~rqeiydw 139 (151)
T PHA02128 60 TGLLHLANEVSAQGGARIITMNSANKRHVQDMVSYQWRGDIRISTISELTDRCPKVKFLMIDESEYTLTSRHQRQEIYDW 139 (151)
T ss_pred chHHHHHHHHHhcCCeEEEEeccchhhHHHHHhcccccCceEEeeHHHHhccCCeeEEEEEcchhceecchhhHHHHHhh
Confidence 3566777888999999988876655444443322 1 23445555 6777776666899999
Q ss_pred HHhhCCeEEee
Q 019173 201 CRELGIGIVPY 211 (345)
Q Consensus 201 ~~~~gi~v~a~ 211 (345)
+..+|+.++.+
T Consensus 140 agthgvefvim 150 (151)
T PHA02128 140 AGTHGVEFVIM 150 (151)
T ss_pred cccCceEEEEe
Confidence 99999998764
No 65
>PLN02363 phosphoribosylanthranilate isomerase
Probab=47.22 E-value=58 Score=29.55 Aligned_cols=67 Identities=21% Similarity=0.319 Sum_probs=44.7
Q ss_pred HhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecC-CCcHHHHHHHhcCCCeeEEeccc
Q 019173 119 LKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPITAVQLEW 186 (345)
Q Consensus 119 L~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~ 186 (345)
..++|.|||=+++........+.+.+ ..+.+......++.+||- +.+.+.+.++++..+++++|+.-
T Consensus 63 a~~~GaD~iGfIf~~~SpR~Vs~e~a-~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLHG 130 (256)
T PLN02363 63 AVEAGADFIGMILWPKSKRSISLSVA-KEISQVAREGGAKPVGVFVDDDANTILRAADSSDLELVQLHG 130 (256)
T ss_pred HHHcCCCEEEEecCCCCCCcCCHHHH-HHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCEEEECC
Confidence 44689999999754433333444433 333333333246679996 67888899999888999999954
No 66
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=46.67 E-value=70 Score=28.38 Aligned_cols=147 Identities=14% Similarity=0.143 Sum_probs=87.0
Q ss_pred eecCCCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhc-----CCCCCe
Q 019173 12 VKLGTQGLEVSKLGFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKM-----LPRENI 86 (345)
Q Consensus 12 ~~lg~tg~~vs~lg~G~~~~g~~~~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~-----~~R~~~ 86 (345)
+++| .|+.++.|.+ +.++.+.- .---+.+++.-++..|.+.-= |. +|..+..+++. .+=.+.
T Consensus 19 krLG-GGiP~GsL~l----IEGd~~tG-KSvLsqr~~YG~L~~g~~v~y----vs---Te~T~refi~qm~sl~ydv~~~ 85 (235)
T COG2874 19 KRLG-GGIPVGSLIL----IEGDNGTG-KSVLSQRFAYGFLMNGYRVTY----VS---TELTVREFIKQMESLSYDVSDF 85 (235)
T ss_pred hhcc-CCCccCeEEE----EECCCCcc-HHHHHHHHHHHHHhCCceEEE----EE---echhHHHHHHHHHhcCCCchHH
Confidence 3565 4677777765 33322221 233468888889999987552 22 77788888766 233333
Q ss_pred EEEeccccccCCccccccCCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCC------CHHHHHHHHHHHHHcCCcceE
Q 019173 87 QVATKFGFAELGLDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSV------PIEETIGEMKKLVEEGKIKYI 160 (345)
Q Consensus 87 ~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~------~~~~~~~~L~~L~~~G~ir~i 160 (345)
++.-+....+-+ -....+.++.-+.-++..++....-.-|++.+...+.-. ...+.+..+.+|.+.||+--+
T Consensus 86 ~l~G~l~~~~~~--~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIil 163 (235)
T COG2874 86 LLSGRLLFFPVN--LEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIIL 163 (235)
T ss_pred HhcceeEEEEec--ccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEE
Confidence 443333322110 001234556666667777777777778999998875431 234567778888889998766
Q ss_pred ecCC--CcHHHHHHH
Q 019173 161 GLSE--ASPDTIRRA 173 (345)
Q Consensus 161 GvS~--~~~~~l~~~ 173 (345)
=+.- ++.+.+-++
T Consensus 164 Tvhp~~l~e~~~~ri 178 (235)
T COG2874 164 TVHPSALDEDVLTRI 178 (235)
T ss_pred EeChhhcCHHHHHHH
Confidence 6643 344444443
No 67
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=46.62 E-value=2.6e+02 Score=26.42 Aligned_cols=119 Identities=19% Similarity=0.188 Sum_probs=71.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeeecCCCCCC----------------C--cHHHHHHHHHhcCCCCCeEEEeccccccCCcc
Q 019173 39 VSEEDGISIIKHAFNKGITFFDTADKYGP----------------Y--TNEILLGKALKMLPRENIQVATKFGFAELGLD 100 (345)
Q Consensus 39 ~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~----------------g--~sE~~lG~~l~~~~R~~~~i~tK~~~~~~~~~ 100 (345)
++.+.-.++.++|-+.|+-+|=|.-.+.. | ....+|....+ .-..+.++|=.
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~--~~kPiIlSTGm-------- 156 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAK--KGKPIILSTGM-------- 156 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHh--cCCCEEEEccc--------
Confidence 46777889999999999988866544431 0 01112221111 11234444432
Q ss_pred ccccCCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCC-CCHHHH-HHHHHHHHHcCCcceEecCCCcHHHHHHHhcC
Q 019173 101 AVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTS-VPIEET-IGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV 176 (345)
Q Consensus 101 ~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~-~~~~~~-~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~ 176 (345)
.+-+.|+++++...++=. .|+.++|+...+ .+.+++ +..+..|.+.= .--||+|.|+...+..+.+.
T Consensus 157 -----a~~~ei~~av~~~r~~g~---~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l~Av 225 (347)
T COG2089 157 -----ATIEEIEEAVAILRENGN---PDIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPLAAV 225 (347)
T ss_pred -----ccHHHHHHHHHHHHhcCC---CCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHHHHH
Confidence 245667777766555432 399999998665 456554 67777777664 45699999987655444433
No 68
>COG0218 Predicted GTPase [General function prediction only]
Probab=46.37 E-value=2e+02 Score=25.08 Aligned_cols=116 Identities=16% Similarity=0.035 Sum_probs=76.6
Q ss_pred ccccccccccCCCCCCCCCCHHHHHHHHHHHHHc------CCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEecccc
Q 019173 21 VSKLGFGCMSLSGGYNSPVSEEDGISIIKHAFNK------GITFFDTADKYGPYTNEILLGKALKMLPRENIQVATKFGF 94 (345)
Q Consensus 21 vs~lg~G~~~~g~~~~~~~~~~~a~~~l~~A~~~------Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~R~~~~i~tK~~~ 94 (345)
|-.=|||-+... ..-.+...+++...++. .+-.+|.-..-- ..+..+=+++......=+++.||.--
T Consensus 75 VDlPGYGyAkv~-----k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~--~~D~em~~~l~~~~i~~~vv~tK~DK 147 (200)
T COG0218 75 VDLPGYGYAKVP-----KEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPK--DLDREMIEFLLELGIPVIVVLTKADK 147 (200)
T ss_pred EeCCCcccccCC-----HHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCc--HHHHHHHHHHHHcCCCeEEEEEcccc
Confidence 334477766632 11355667777777764 455777654333 35777888888767777899999852
Q ss_pred ccCCccccccCCCHHHHHHHHHHHHhhcCCCcccE--EEeccCCCCCCHHHHHHHHHHHHHc
Q 019173 95 AELGLDAVIVKGNPEYVRSCCEASLKRLDVEYIDL--YYQHRVDTSVPIEETIGEMKKLVEE 154 (345)
Q Consensus 95 ~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl--~~lH~~~~~~~~~~~~~~L~~L~~~ 154 (345)
.......+.+....++|+.+..|- +.+........+++++..+.+....
T Consensus 148 -----------i~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 148 -----------LKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred -----------CChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 345667788888999998777765 4444444445688888887776543
No 69
>PRK00208 thiG thiazole synthase; Reviewed
Probab=46.34 E-value=2.3e+02 Score=25.67 Aligned_cols=77 Identities=19% Similarity=0.128 Sum_probs=57.7
Q ss_pred cCCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCC-CCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcCCCeeEE
Q 019173 104 VKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAV 182 (345)
Q Consensus 104 ~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~-~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~ 182 (345)
...+.+...+-.+-..+-+++++|-+=.+..+... .+..+++++.++|+++|.+- +=+++.++...+++.+. .++++
T Consensus 71 G~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~v-lpyc~~d~~~ak~l~~~-G~~~v 148 (250)
T PRK00208 71 GCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVV-LPYCTDDPVLAKRLEEA-GCAAV 148 (250)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc-CCCEe
Confidence 35677778888888888899999999988776654 46789999999999999865 44666666666665554 33444
No 70
>cd01301 rDP_like renal dipeptidase (rDP), best studied in mammals and also called membrane or microsomal dipeptidase, is a membrane-bound glycoprotein hydrolyzing dipeptides and is involved in hydrolytic metabolism of penem and carbapenem beta-lactam antibiotics. Although the biological function of the enzyme is still unknown, it has been suggested to play a role in the renal glutathione metabolism.
Probab=46.28 E-value=1.3e+02 Score=28.06 Aligned_cols=107 Identities=12% Similarity=0.145 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeccccccCCccccccCCCHHHHHHHHHHHHhh
Q 019173 42 EDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEASLKR 121 (345)
Q Consensus 42 ~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~ 121 (345)
+.-+++|+..-+.|+ .+|+|.. |++.+-++++-. ...+|+|......-.. .++.-.+...+.+. +
T Consensus 154 ~~G~~vv~~mn~lGm-iiDvSH~-----s~~~~~dv~~~s--~~PviaSHsn~ral~~---h~RNltD~~i~~ia----~ 218 (309)
T cd01301 154 PFGKELVREMNRLGI-IIDLSHL-----SERTFWDVLDIS--NAPVIASHSNARALCD---HPRNLTDAQLKAIA----E 218 (309)
T ss_pred HHHHHHHHHHHHcCC-EEEcCCC-----CHHHHHHHHHhc--CCCEEEeccChHHhcC---CCCCCCHHHHHHHH----H
Confidence 467899999999998 9999964 788888888752 3468888876542111 12222333333332 2
Q ss_pred cCCCcccEEEeccC---CCCCCHHHHHHHHHHHHHcCCcceEecCC
Q 019173 122 LDVEYIDLYYQHRV---DTSVPIEETIGEMKKLVEEGKIKYIGLSE 164 (345)
Q Consensus 122 Lg~d~iDl~~lH~~---~~~~~~~~~~~~L~~L~~~G~ir~iGvS~ 164 (345)
-| ..|=+.+.-.. +...+++++++.++.+++-+=+.+||+.+
T Consensus 219 ~G-Gvigi~~~~~fl~~~~~~~~~~~~~hi~~i~~l~G~dhVgiGs 263 (309)
T cd01301 219 TG-GVIGVNFYPAFLSPGADATLDDVVRHIDYIVDLIGIDHVGLGS 263 (309)
T ss_pred cC-CEEEEeeeHHHhCCCCCCCHHHHHHHHHHHHHhcCCCeEEECc
Confidence 23 23333222111 23456889999999999988899999976
No 71
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=46.24 E-value=2.3e+02 Score=25.79 Aligned_cols=166 Identities=13% Similarity=0.057 Sum_probs=84.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeeecCCC--------CCCCcHHHHHHHHHhcCCCCCeEEEeccccccCCccccccCCCHHH
Q 019173 39 VSEEDGISIIKHAFNKGITFFDTADK--------YGPYTNEILLGKALKMLPRENIQVATKFGFAELGLDAVIVKGNPEY 110 (345)
Q Consensus 39 ~~~~~a~~~l~~A~~~Gi~~~DTA~~--------Yg~g~sE~~lG~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~ 110 (345)
.+.++-.++.....+.|+..||.... |-....++.+....+..++.++...+...... ....-|..
T Consensus 18 ~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~------~~~~~p~~ 91 (275)
T cd07937 18 MRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLV------GYRHYPDD 91 (275)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhccccccc------CccCCCcH
Confidence 37788899999999999999998731 11112334444443333444443333321100 01112333
Q ss_pred HHHHHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEec-----CCCcHHHHHHHhcC---CCeeEE
Q 019173 111 VRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGL-----SEASPDTIRRAHAV---HPITAV 182 (345)
Q Consensus 111 i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGv-----S~~~~~~l~~~~~~---~~~~~~ 182 (345)
+.+..-+...+.|++.|-+ ..+..+++.+.+..+..++.|+.-.+++ +.++.+.+.++.+. .+.+.+
T Consensus 92 ~~~~di~~~~~~g~~~iri-----~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i 166 (275)
T cd07937 92 VVELFVEKAAKNGIDIFRI-----FDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSI 166 (275)
T ss_pred HHHHHHHHHHHcCCCEEEE-----eecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEE
Confidence 3333333344456555433 2233447778888999999996443344 34555555444332 344444
Q ss_pred ec--cccccccccccchhhHHHhh-C--CeEEeecCCC
Q 019173 183 QL--EWSLWTRDIENEIVPLCREL-G--IGIVPYSPLG 215 (345)
Q Consensus 183 q~--~~nl~~~~~~~~~l~~~~~~-g--i~v~a~~pl~ 215 (345)
-+ ....+.+..-.+++...+++ + +++..+.-++
T Consensus 167 ~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hnd~G 204 (275)
T cd07937 167 CIKDMAGLLTPYAAYELVKALKKEVGLPIHLHTHDTSG 204 (275)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 33 22333332224666666554 3 4444555554
No 72
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=46.23 E-value=78 Score=30.10 Aligned_cols=73 Identities=10% Similarity=0.107 Sum_probs=48.8
Q ss_pred HHHHHHHHHcCCcc-eEecCCCcHHHHHHHhcCCCeeEEecccccccc-ccccchhhHHHhhCCeEEeecCCCcc
Q 019173 145 IGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWTR-DIENEIVPLCRELGIGIVPYSPLGRG 217 (345)
Q Consensus 145 ~~~L~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~nl~~~-~~~~~~l~~~~~~gi~v~a~~pl~~G 217 (345)
++.+.+|+++..+. +.|=+.++...+..++....++++|+.....-. ..-.++...|+++|+.++..+-+.+|
T Consensus 228 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~s~ 302 (365)
T cd03318 228 LDGLARLRSRNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLESS 302 (365)
T ss_pred HHHHHHHHhhcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcchhH
Confidence 56667777765555 444455677788888877778888886554321 11268899999999998865444443
No 73
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=45.85 E-value=1.1e+02 Score=29.20 Aligned_cols=70 Identities=11% Similarity=-0.038 Sum_probs=52.1
Q ss_pred HHHHHHHHHcCCcc-eEecCCCcHHHHHHHhcCCCeeEEecccccccc-ccccchhhHHHhhCCeEEeecCC
Q 019173 145 IGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWTR-DIENEIVPLCRELGIGIVPYSPL 214 (345)
Q Consensus 145 ~~~L~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~nl~~~-~~~~~~l~~~~~~gi~v~a~~pl 214 (345)
++.+.+|++...+. ..|=|.++...+..++....++++|+.....-. ..-.++.+.|+++|+.+..++..
T Consensus 203 ~~~~~~L~~~~~~pia~gE~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 274 (361)
T cd03322 203 QEAFRLIRQHTATPLAVGEVFNSIWDWQNLIQERLIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHGPT 274 (361)
T ss_pred HHHHHHHHhcCCCCEEeccCCcCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccCCC
Confidence 56677788877665 556666788888888888888999997664321 11268999999999999876543
No 74
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=45.71 E-value=1.1e+02 Score=27.83 Aligned_cols=65 Identities=20% Similarity=0.204 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHhhcC--------------------------CCcccEEEeccCCCCCCH---HHHHHHHHHHHHcCC
Q 019173 106 GNPEYVRSCCEASLKRLD--------------------------VEYIDLYYQHRVDTSVPI---EETIGEMKKLVEEGK 156 (345)
Q Consensus 106 ~~~~~i~~~v~~sL~~Lg--------------------------~d~iDl~~lH~~~~~~~~---~~~~~~L~~L~~~G~ 156 (345)
.+++. ++.++++|+++| ....|+++|.-|..-.+. .++++-|.+|+++|+
T Consensus 112 ~~~~d-~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~ 190 (254)
T COG1121 112 LNKKD-KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK 190 (254)
T ss_pred ccHHH-HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCC
Confidence 44555 788999999998 366788999888666554 468999999999987
Q ss_pred cceEecCCCcHHHHHHH
Q 019173 157 IKYIGLSEASPDTIRRA 173 (345)
Q Consensus 157 ir~iGvS~~~~~~l~~~ 173 (345)
.|=+.+|+...+...
T Consensus 191 --tIl~vtHDL~~v~~~ 205 (254)
T COG1121 191 --TVLMVTHDLGLVMAY 205 (254)
T ss_pred --EEEEEeCCcHHhHhh
Confidence 677888887766544
No 75
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=45.60 E-value=1.5e+02 Score=29.04 Aligned_cols=108 Identities=19% Similarity=0.225 Sum_probs=60.8
Q ss_pred cccccccccCCCC----CCCCCCHHHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeccccccC
Q 019173 22 SKLGFGCMSLSGG----YNSPVSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLPRENIQVATKFGFAEL 97 (345)
Q Consensus 22 s~lg~G~~~~g~~----~~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~R~~~~i~tK~~~~~~ 97 (345)
.+|.+|-.+|... -+...+.+++.+.++.+.+.|+.-|-.-=.||-
T Consensus 149 NRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIygl------------------------------ 198 (416)
T COG0635 149 NRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGL------------------------------ 198 (416)
T ss_pred CEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCC------------------------------
Confidence 4666666665431 122235566666666666666655543334441
Q ss_pred CccccccCCCHHHHHHHHHHHHhhcCCCcccEEEe-ccCCCC----------CC-H---HHHHHH-HHHHHHcCCcceEe
Q 019173 98 GLDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQ-HRVDTS----------VP-I---EETIGE-MKKLVEEGKIKYIG 161 (345)
Q Consensus 98 ~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~l-H~~~~~----------~~-~---~~~~~~-L~~L~~~G~ir~iG 161 (345)
+.-+.+.+.+.++..++ |+.|+|.+|.+ |-|... .+ . .+.++. .+.|.+.|- +++|
T Consensus 199 ------P~QT~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~ye 270 (416)
T COG0635 199 ------PGQTLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQYE 270 (416)
T ss_pred ------CCCCHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cEEe
Confidence 23356666676666654 56788888877 333110 11 1 234444 445566666 8999
Q ss_pred cCCCcH
Q 019173 162 LSEASP 167 (345)
Q Consensus 162 vS~~~~ 167 (345)
+|||.-
T Consensus 271 isnfa~ 276 (416)
T COG0635 271 ISNFAK 276 (416)
T ss_pred echhcC
Confidence 999975
No 76
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=45.34 E-value=26 Score=26.87 Aligned_cols=54 Identities=24% Similarity=0.218 Sum_probs=40.1
Q ss_pred CCCcHHHHHHHhcCCCeeEEecccccccc-ccccchhhHHHhhCCeEEeecCCCcc
Q 019173 163 SEASPDTIRRAHAVHPITAVQLEWSLWTR-DIENEIVPLCRELGIGIVPYSPLGRG 217 (345)
Q Consensus 163 S~~~~~~l~~~~~~~~~~~~q~~~nl~~~-~~~~~~l~~~~~~gi~v~a~~pl~~G 217 (345)
+.++...+.++++...++++|+...-.-- ..-..+.+.|+++|+.+...+. .++
T Consensus 3 ~~~~~~~~~~li~~~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 3 SLFSLHDFRRLIEAGAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp TSSSHHHHHHHHHTTSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCCHHHHHHHHHcCCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 45677888889988888999997554321 1126899999999999999887 554
No 77
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=45.25 E-value=1.3e+02 Score=26.76 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=25.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCCeeecCCCCCCC
Q 019173 35 YNSPVSEEDGISIIKHAFNKGITFFDTADKYGPY 68 (345)
Q Consensus 35 ~~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g 68 (345)
.|+. +.++..++++.|.+.|++-+=..+||-.|
T Consensus 14 DGp~-s~eesl~ml~~A~~qGvt~iVaTsHh~~g 46 (254)
T COG4464 14 DGPK-SLEESLAMLREAVRQGVTKIVATSHHLHG 46 (254)
T ss_pred CCCC-cHHHHHHHHHHHHHcCceEEeecccccCC
Confidence 3444 88999999999999999977655566544
No 78
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=44.51 E-value=37 Score=31.34 Aligned_cols=103 Identities=12% Similarity=0.056 Sum_probs=58.5
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcCCCeeEEec
Q 019173 105 KGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQL 184 (345)
Q Consensus 105 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~ 184 (345)
.++.+. +..+-+.|.++|+++|.+-.++.|...-...+.++.+..+.+...++...+. .+...++.+++.. ++.+.+
T Consensus 22 ~~s~e~-k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~g-~~~v~i 98 (287)
T PRK05692 22 FIPTAD-KIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAAG-ADEVAV 98 (287)
T ss_pred CcCHHH-HHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHcC-CCEEEE
Confidence 344444 4556677999999999998665553221112234445555444446655554 4677787777652 232322
Q ss_pred cccc--cc------ccc------ccchhhHHHhhCCeEEe
Q 019173 185 EWSL--WT------RDI------ENEIVPLCRELGIGIVP 210 (345)
Q Consensus 185 ~~nl--~~------~~~------~~~~l~~~~~~gi~v~a 210 (345)
-.+. .. +.. -.+.+++++++|+.+.+
T Consensus 99 ~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~ 138 (287)
T PRK05692 99 FASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRG 138 (287)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 2221 10 110 14789999999998864
No 79
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=44.25 E-value=3e+02 Score=26.56 Aligned_cols=154 Identities=15% Similarity=0.101 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHHHH-cCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeccccccCCccccccCCCHHHHHHHHHHH
Q 019173 40 SEEDGISIIKHAFN-KGITFFDTADKYGPYTNEILLGKALKMLPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEAS 118 (345)
Q Consensus 40 ~~~~a~~~l~~A~~-~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~s 118 (345)
+.++..+.++.+++ .|++.|=.--.-.+-..+.-.=+++++.- .++.|..-.. ..++++... +.
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKvG~~~~~~di~~v~avRea~-~~~~l~vDaN----------~~w~~~~A~----~~ 232 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKGGVLPGEEEIEAVKALAEAF-PGARLRLDPN----------GAWSLETAI----RL 232 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEecCCCCHHHHHHHHHHHHHhC-CCCcEEEeCC----------CCcCHHHHH----HH
Confidence 56666777777775 59997743210001011111223343311 1233322221 234554433 33
Q ss_pred HhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhcCCCeeEEecccccccc-ccccc
Q 019173 119 LKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWTR-DIENE 196 (345)
Q Consensus 119 L~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~nl~~~-~~~~~ 196 (345)
+++|. + ++.++-.|-. -++.+.+|++...+- +.|=|.++...+..+++...++++|+.....-. ..-.+
T Consensus 233 ~~~l~-~--~l~~iEeP~~------d~~~~~~L~~~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit~~~k 303 (395)
T cd03323 233 AKELE-G--VLAYLEDPCG------GREGMAEFRRATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMRGSVR 303 (395)
T ss_pred HHhcC-c--CCCEEECCCC------CHHHHHHHHHhcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHHHHHH
Confidence 44453 2 6666666543 367778888887665 556566788888888888889999987664321 11268
Q ss_pred hhhHHHhhCCeEEeecCCCcc
Q 019173 197 IVPLCRELGIGIVPYSPLGRG 217 (345)
Q Consensus 197 ~l~~~~~~gi~v~a~~pl~~G 217 (345)
+...|+.+||.+..++....|
T Consensus 304 ia~~A~~~gi~~~~h~~~e~~ 324 (395)
T cd03323 304 VAQVCETWGLGWGMHSNNHLG 324 (395)
T ss_pred HHHHHHHcCCeEEEecCcccH
Confidence 999999999999987765433
No 80
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=43.42 E-value=68 Score=28.16 Aligned_cols=82 Identities=17% Similarity=0.229 Sum_probs=53.3
Q ss_pred HhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCC-cceEecCC-CcHHHHHHHhcCCCeeEEeccccccccccccc
Q 019173 119 LKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSE-ASPDTIRRAHAVHPITAVQLEWSLWTRDIENE 196 (345)
Q Consensus 119 L~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~-ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~nl~~~~~~~~ 196 (345)
...+|.||+=+++.-...+..+.++ ..++.+.-. ++.+||.. .+.+.+.++++..+++.+|+.-.. ..+
T Consensus 18 a~~~gad~iG~If~~~SpR~Vs~~~----a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~e-----~~~ 88 (208)
T COG0135 18 AAKAGADYIGFIFVPKSPRYVSPEQ----AREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGDE-----DPE 88 (208)
T ss_pred HHHcCCCEEEEEEcCCCCCcCCHHH----HHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCCC-----CHH
Confidence 4568889988877753333344433 333444333 88999975 578889999999999999995441 234
Q ss_pred hhhHHHhhC-CeEE
Q 019173 197 IVPLCRELG-IGIV 209 (345)
Q Consensus 197 ~l~~~~~~g-i~v~ 209 (345)
.++..+++. +.|+
T Consensus 89 ~~~~l~~~~~~~v~ 102 (208)
T COG0135 89 YIDQLKEELGVPVI 102 (208)
T ss_pred HHHHHHhhcCCceE
Confidence 555555554 5555
No 81
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=42.58 E-value=91 Score=29.73 Aligned_cols=73 Identities=11% Similarity=0.041 Sum_probs=51.3
Q ss_pred HHHHHHHHHcCCcc-eEecCCCcHHHHHHHhcCCCeeEEecccccccc-ccccchhhHHHhhCCeEEeecCCCcc
Q 019173 145 IGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWTR-DIENEIVPLCRELGIGIVPYSPLGRG 217 (345)
Q Consensus 145 ~~~L~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~nl~~~-~~~~~~l~~~~~~gi~v~a~~pl~~G 217 (345)
++.+.+|++...+. +.|=|-++...+..++.....+++|+...-.-. ..-..+...|+.+|+.++..+.+.++
T Consensus 227 ~~~~~~l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~ 301 (368)
T TIGR02534 227 REALARLTRRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGP 301 (368)
T ss_pred HHHHHHHHHhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhH
Confidence 56666777776555 556667788888888877778888886664321 11268899999999998876555544
No 82
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=42.26 E-value=2.6e+02 Score=25.23 Aligned_cols=105 Identities=16% Similarity=0.050 Sum_probs=70.7
Q ss_pred cCCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCC-CCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcCCCeeEE
Q 019173 104 VKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTS-VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAV 182 (345)
Q Consensus 104 ~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~-~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~ 182 (345)
...+.+.-.+-.+-..+-+++++|-+=.+..+... .+..+++++.++|+++|.+- +=+++.++...+++.+. .++++
T Consensus 71 G~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~v-lpyc~dd~~~ar~l~~~-G~~~v 148 (248)
T cd04728 71 GCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTV-LPYCTDDPVLAKRLEDA-GCAAV 148 (248)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEE-EEEeCCCHHHHHHHHHc-CCCEe
Confidence 35677777788888888899999999988877655 36789999999999999865 44667777666666555 34555
Q ss_pred ecccccccccc---ccchhhHHHh-hCCeEEe
Q 019173 183 QLEWSLWTRDI---ENEIVPLCRE-LGIGIVP 210 (345)
Q Consensus 183 q~~~nl~~~~~---~~~~l~~~~~-~gi~v~a 210 (345)
+.-=.+.-... ..+.+....+ .++.|++
T Consensus 149 mPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~ 180 (248)
T cd04728 149 MPLGSPIGSGQGLLNPYNLRIIIERADVPVIV 180 (248)
T ss_pred CCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEE
Confidence 33122222210 1345555555 4677776
No 83
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=41.94 E-value=68 Score=33.09 Aligned_cols=69 Identities=13% Similarity=0.137 Sum_probs=48.4
Q ss_pred HhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecC-CCcHHHHHHHhcCCCeeEEecccc
Q 019173 119 LKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPITAVQLEWS 187 (345)
Q Consensus 119 L~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~n 187 (345)
...+|.||+=+++.....+..+.+.+...+.+....-.++.+||- |.+++.+.++.+...++++|+.-.
T Consensus 19 a~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLHG~ 88 (610)
T PRK13803 19 AVDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLHGA 88 (610)
T ss_pred HHHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 356899999998666544555565523433333333357789996 678889999988889999999643
No 84
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=41.70 E-value=64 Score=31.97 Aligned_cols=66 Identities=18% Similarity=0.238 Sum_probs=44.4
Q ss_pred HHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecC-CCcHHHHHHHhcCCCeeEEecccc
Q 019173 118 SLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPITAVQLEWS 187 (345)
Q Consensus 118 sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS-~~~~~~l~~~~~~~~~~~~q~~~n 187 (345)
....+|.|++=+.+.....+..+.+.+-+....+ . ++.+||- |-+++.+.++.+..+++++|+.-+
T Consensus 272 ~a~~~GaD~lGfIf~~~SpR~V~~~~a~~i~~~l-~---v~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG~ 338 (454)
T PRK09427 272 AAYDAGAVYGGLIFVEKSPRYVSLEQAQEIIAAA-P---LRYVGVFRNADIEDIVDIAKQLSLAAVQLHGD 338 (454)
T ss_pred HHHhCCCCEEeeEeCCCCCCCCCHHHHHHHHHhC-C---CCEEEEEeCCCHHHHHHHHHHcCCCEEEeCCC
Confidence 3556888998887544333334444333332222 2 8889997 568888989888889999999654
No 85
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=41.54 E-value=81 Score=30.04 Aligned_cols=97 Identities=9% Similarity=0.009 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhhcCCCcccEEEeccCCCC---CCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcCCCeeEEecc
Q 019173 109 EYVRSCCEASLKRLDVEYIDLYYQHRVDTS---VPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLE 185 (345)
Q Consensus 109 ~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~---~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~ 185 (345)
..-+..+-+.|.++|+++|++-..-+|... .+.+++++.+.. ...++..++. .+...++.+++... +.+.+-
T Consensus 67 ~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~---~~~~~~~~l~-~n~~die~A~~~g~-~~v~i~ 141 (347)
T PLN02746 67 TSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRN---LEGARFPVLT-PNLKGFEAAIAAGA-KEVAVF 141 (347)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHh---ccCCceeEEc-CCHHHHHHHHHcCc-CEEEEE
Confidence 344566777799999999999765555321 233455555543 2235555554 47778888877632 222221
Q ss_pred ---------ccccccccc-----cchhhHHHhhCCeEEe
Q 019173 186 ---------WSLWTRDIE-----NEIVPLCRELGIGIVP 210 (345)
Q Consensus 186 ---------~nl~~~~~~-----~~~l~~~~~~gi~v~a 210 (345)
.|+-....+ .+++++|+++|+.|.+
T Consensus 142 ~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~ 180 (347)
T PLN02746 142 ASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRG 180 (347)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 122111111 4789999999998863
No 86
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=41.30 E-value=2.6e+02 Score=24.85 Aligned_cols=163 Identities=14% Similarity=0.153 Sum_probs=105.1
Q ss_pred CHHHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeccccccCCccccccCCCHHHHHHHHHHHH
Q 019173 40 SEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEASL 119 (345)
Q Consensus 40 ~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL 119 (345)
+..+....+...+.-++......---| -+..-| +.+.. ...+..+.|...-. .....+++.+...+.+..
T Consensus 11 PR~Dv~p~l~~~l~~~v~i~e~G~LDg--ls~~eI-~~~aP-~~ge~vLvTrL~DG------~~V~ls~~~v~~~lq~~i 80 (221)
T PF07302_consen 11 PRTDVTPELTEILGEGVEIVEAGALDG--LSREEI-AALAP-EPGEYVLVTRLRDG------TQVVLSKKKVEPRLQACI 80 (221)
T ss_pred CCchhHHHHHHHcCCCceEEEeccCCC--CCHHHH-HHhCC-CCCCceeEEEeCCC------CEEEEEHHHHHHHHHHHH
Confidence 567888889999988888876665444 355555 66665 45567777776421 235688999999999999
Q ss_pred hhcCCCcccEEEeccCCCC------C---CHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcC---CCeeEEecccc
Q 019173 120 KRLDVEYIDLYYQHRVDTS------V---PIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAV---HPITAVQLEWS 187 (345)
Q Consensus 120 ~~Lg~d~iDl~~lH~~~~~------~---~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~---~~~~~~q~~~n 187 (345)
++|..+-.|+.++-+-..- . ..+.++..+-...-.| +.+||-.-.++|+....+. ....+.-.-.|
T Consensus 81 ~~le~~G~d~illlCTG~F~~l~~~~~lleP~ril~~lV~al~~~--~~vGVivP~~eQ~~~~~~kW~~l~~~~~~a~as 158 (221)
T PF07302_consen 81 AQLEAQGYDVILLLCTGEFPGLTARNPLLEPDRILPPLVAALVGG--HQVGVIVPLPEQIAQQAEKWQPLGNPVVVAAAS 158 (221)
T ss_pred HHHHHCCCCEEEEeccCCCCCCCCCcceeehHHhHHHHHHHhcCC--CeEEEEecCHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 9998776888877654321 1 1244566666555566 7899988877777644333 22223333455
Q ss_pred ccccccccchhhHHH---hhCCeEEeecCCC
Q 019173 188 LWTRDIENEIVPLCR---ELGIGIVPYSPLG 215 (345)
Q Consensus 188 l~~~~~~~~~l~~~~---~~gi~v~a~~pl~ 215 (345)
++..+. .++.+.++ ++|..++...-++
T Consensus 159 Py~~~~-~~l~~Aa~~L~~~gadlIvLDCmG 188 (221)
T PF07302_consen 159 PYEGDE-EELAAAARELAEQGADLIVLDCMG 188 (221)
T ss_pred CCCCCH-HHHHHHHHHHHhcCCCEEEEECCC
Confidence 553332 34444444 5689999877776
No 87
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=41.15 E-value=3.5e+02 Score=26.30 Aligned_cols=161 Identities=16% Similarity=0.216 Sum_probs=82.5
Q ss_pred cccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeecCCCCCCC----cHHHHHHHHHhc-----CCCCCeEEEe
Q 019173 20 EVSKLGFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFDTADKYGPY----TNEILLGKALKM-----LPRENIQVAT 90 (345)
Q Consensus 20 ~vs~lg~G~~~~g~~~~~~~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g----~sE~~lG~~l~~-----~~R~~~~i~t 90 (345)
+|=+++.|-=+..+.+ -+..++.+.+..|+++|- ...|++. .+-+.+.+++.. ...+++|+++
T Consensus 62 ~iipl~~GDPsv~~~~---~ts~~a~~Av~~al~Sgk-----~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~lts 133 (447)
T KOG0259|consen 62 PILPLGHGDPSVYPCF---RTSQEAEQAVVDALRSGK-----GNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTS 133 (447)
T ss_pred eeccCCCCCCCccccc---cCCHHHHHHHHHHHhcCC-----CCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEec
Confidence 5556666644433323 245778888888888873 3467654 456667777644 4678888877
Q ss_pred ccccccCCccccccCCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecC---CC--
Q 019173 91 KFGFAELGLDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS---EA-- 165 (345)
Q Consensus 91 K~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS---~~-- 165 (345)
=+.- -.+-+-.+|.+=| -. ++|-+|.. ++-++......| .||++-+= .|
T Consensus 134 GC~q----------------AIe~~i~~LA~p~---aN-ILlPrPGf--p~Y~~~a~~~~l----EVR~ydlLPe~~weI 187 (447)
T KOG0259|consen 134 GCSQ----------------AIELAISSLANPG---AN-ILLPRPGF--PLYDTRAIYSGL----EVRYYDLLPEKDWEI 187 (447)
T ss_pred cchH----------------HHHHHHHHhcCCC---Cc-eecCCCCC--chHHHhhhhcCc----eeEeecccCccccee
Confidence 6531 1222223344333 22 23333332 232222221111 35555442 22
Q ss_pred cHHHHHHHhcCCCeeE-Eeccccc----cccccccchhhHHHhhCCeEEeecCC
Q 019173 166 SPDTIRRAHAVHPITA-VQLEWSL----WTRDIENEIVPLCRELGIGIVPYSPL 214 (345)
Q Consensus 166 ~~~~l~~~~~~~~~~~-~q~~~nl----~~~~~~~~~l~~~~~~gi~v~a~~pl 214 (345)
+...++.+++..-++. +..+.|+ +..+..+++.+.|+++||-|++=..+
T Consensus 188 DL~~veal~DENT~AivviNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY 241 (447)
T KOG0259|consen 188 DLDGVEALADENTVAIVVINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVY 241 (447)
T ss_pred chHHHHHhhccCeeEEEEeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhc
Confidence 2345555555533332 2223332 22223378888888888888864443
No 88
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=41.11 E-value=1.2e+02 Score=28.62 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=56.3
Q ss_pred cEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhcCCCeeEEecccccccc-ccccchhhHHHhhC
Q 019173 128 DLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWTR-DIENEIVPLCRELG 205 (345)
Q Consensus 128 Dl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~nl~~~-~~~~~~l~~~~~~g 205 (345)
++.++-.|-+.. -++.+.+|+++..+. +.|=+.++...+..+++...++++|+..+-.-. ..-.++...|+.+|
T Consensus 198 ~~~~iEeP~~~~----d~~~~~~l~~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit~~~~i~~~A~~~g 273 (341)
T cd03327 198 ELRWIEEPLIPD----DIEGYAELKKATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGGITELKKIAALAEAYG 273 (341)
T ss_pred CCccccCCCCcc----CHHHHHHHHhcCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCCHHHHHHHHHHHHHcC
Confidence 555555554333 356677788877666 445566788899999888889999987664321 11268999999999
Q ss_pred CeEEeec
Q 019173 206 IGIVPYS 212 (345)
Q Consensus 206 i~v~a~~ 212 (345)
+.+..+.
T Consensus 274 ~~~~~h~ 280 (341)
T cd03327 274 VPVVPHA 280 (341)
T ss_pred Ceecccc
Confidence 9988653
No 89
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=41.06 E-value=3.1e+02 Score=26.32 Aligned_cols=85 Identities=19% Similarity=0.085 Sum_probs=56.4
Q ss_pred EEEeccCCCCCCHHHHHHHHHHHHHc------CCcceEecCCCcHHHHHHHhcCCCeeEEecccccccc-ccccchhhHH
Q 019173 129 LYYQHRVDTSVPIEETIGEMKKLVEE------GKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWTR-DIENEIVPLC 201 (345)
Q Consensus 129 l~~lH~~~~~~~~~~~~~~L~~L~~~------G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~nl~~~-~~~~~~l~~~ 201 (345)
++++-.|-+..++++-++.+.+|++. +.=-..|=+.++.+.+.++++....+++|+..+-.-. ..-.++...|
T Consensus 229 ~~~iEqP~~~~d~~~~~~~~a~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt~a~kia~lA 308 (369)
T cd03314 229 PLRIEGPMDAGSREAQIERMAALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGIDNTIDAVLYC 308 (369)
T ss_pred cEEEecCCCCCcchhhHHHHHHHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHHHHHHHHHHH
Confidence 34666655443322345666667665 3333345566788889888888888999987774321 1126899999
Q ss_pred HhhCCeEEeecC
Q 019173 202 RELGIGIVPYSP 213 (345)
Q Consensus 202 ~~~gi~v~a~~p 213 (345)
+.+||.++..+.
T Consensus 309 ~a~Gi~~~~h~~ 320 (369)
T cd03314 309 KEHGVGAYLGGS 320 (369)
T ss_pred HHcCCcEEEeCC
Confidence 999999998654
No 90
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=40.74 E-value=1.7e+02 Score=28.29 Aligned_cols=83 Identities=7% Similarity=-0.010 Sum_probs=57.8
Q ss_pred cEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhcCCCeeEEecccccccc-ccccchhhHHHhhC
Q 019173 128 DLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWTR-DIENEIVPLCRELG 205 (345)
Q Consensus 128 Dl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~nl~~~-~~~~~~l~~~~~~g 205 (345)
++.++-.|-+.. -++.+.+|++.-.+. ..|=|.++...+..+++...++++|+...-.-. ..-.++...|+.+|
T Consensus 233 ~l~~iEeP~~~~----d~~~~~~L~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit~~~kia~lA~~~g 308 (404)
T PRK15072 233 RLFWLEDPTPAE----NQEAFRLIRQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGITHLRRIADFAALYQ 308 (404)
T ss_pred CCcEEECCCCcc----CHHHHHHHHhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHHHHHHHHHHHHHcC
Confidence 455555443322 256777788876665 555666888999999988889999987664321 11268999999999
Q ss_pred CeEEeecCC
Q 019173 206 IGIVPYSPL 214 (345)
Q Consensus 206 i~v~a~~pl 214 (345)
+.++.+...
T Consensus 309 i~~~~h~~~ 317 (404)
T PRK15072 309 VRTGSHGPT 317 (404)
T ss_pred CceeeccCc
Confidence 999986553
No 91
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=40.64 E-value=1.5e+02 Score=28.70 Aligned_cols=59 Identities=17% Similarity=0.060 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEecc-CCCC------------CCHH---HHH-HHHHHHHHcCCcceEecCCCc
Q 019173 106 GNPEYVRSCCEASLKRLDVEYIDLYYQHR-VDTS------------VPIE---ETI-GEMKKLVEEGKIKYIGLSEAS 166 (345)
Q Consensus 106 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~-~~~~------------~~~~---~~~-~~L~~L~~~G~ir~iGvS~~~ 166 (345)
-+.+.+.+.++..+ +|+.++|.++.+.- |... .+.+ +.+ .+.+.|.+.|-. ++++|||.
T Consensus 179 qt~e~~~~tl~~~~-~l~p~~is~y~L~~~pgT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~yeisnfa 254 (400)
T PRK07379 179 QTLEDWQASLEAAI-ALNPTHLSCYDLVLEPGTAFGKQYQPGKAPLPSDETTAAMYRLAQEILTQAGYE-HYEISNYA 254 (400)
T ss_pred CCHHHHHHHHHHHH-cCCCCEEEEecceecCCchhHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCc-eeeeeheE
Confidence 46677777776655 47778888876652 2110 0111 222 356667777864 58888885
No 92
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=40.46 E-value=2.3e+02 Score=26.88 Aligned_cols=134 Identities=19% Similarity=0.247 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHHHHHcC-CCeeecCCCCCCCcHHHHHHHHHhcCC-CCCeEEEeccccccCCccccccCCCHHHHHHHHH
Q 019173 39 VSEEDGISIIKHAFNKG-ITFFDTADKYGPYTNEILLGKALKMLP-RENIQVATKFGFAELGLDAVIVKGNPEYVRSCCE 116 (345)
Q Consensus 39 ~~~~~a~~~l~~A~~~G-i~~~DTA~~Yg~g~sE~~lG~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~ 116 (345)
.+.++..+.-+.|-+.| .+|...|..++.|+.-..+-++++... --.+-+.--+|. .+.+. .
T Consensus 84 ~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c~slG~-----------l~~eq-----~ 147 (335)
T COG0502 84 MEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELGLEVCASLGM-----------LTEEQ-----A 147 (335)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcCcHHhhccCC-----------CCHHH-----H
Confidence 47888999999999999 889898888864445555555555511 111222222331 22333 3
Q ss_pred HHHhhcCCCcccEEEeccCCC----------CCCHHHHHHHHHHHHHcCCcce----EecCCCcHHHHHHHhcCCCee-E
Q 019173 117 ASLKRLDVEYIDLYYQHRVDT----------SVPIEETIGEMKKLVEEGKIKY----IGLSEASPDTIRRAHAVHPIT-A 181 (345)
Q Consensus 117 ~sL~~Lg~d~iDl~~lH~~~~----------~~~~~~~~~~L~~L~~~G~ir~----iGvS~~~~~~l~~~~~~~~~~-~ 181 (345)
+-|+.-|+++ +-|+.+. ...+++-++.++.+++.|.=-. +|+.....+++..+....... .
T Consensus 148 ~~L~~aGvd~----ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~p 223 (335)
T COG0502 148 EKLADAGVDR----YNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTP 223 (335)
T ss_pred HHHHHcChhh----eecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCCC
Confidence 4467777665 4465543 3457899999999999886433 355555555554444332111 3
Q ss_pred Eeccccccccc
Q 019173 182 VQLEWSLWTRD 192 (345)
Q Consensus 182 ~q~~~nl~~~~ 192 (345)
-.++.|.+++.
T Consensus 224 dsVPIn~l~P~ 234 (335)
T COG0502 224 DSVPINFLNPI 234 (335)
T ss_pred CeeeeeeecCC
Confidence 34567777765
No 93
>PRK06424 transcription factor; Provisional
Probab=40.32 E-value=88 Score=25.72 Aligned_cols=80 Identities=13% Similarity=0.104 Sum_probs=40.6
Q ss_pred ccchhhHHHhhCCeEEee---cCCCcc--ccCCCCC--CCCCCCCCccccCCCCCccchhhhHHHHHHHHHHHHHcCCCh
Q 019173 194 ENEIVPLCRELGIGIVPY---SPLGRG--FFGGKAV--VESVPPDSFLNFLPRFTGENLDRNRSIYFRIENLAKKYKCTS 266 (345)
Q Consensus 194 ~~~~l~~~~~~gi~v~a~---~pl~~G--~L~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~ 266 (345)
+..+-+.|.+.|..|..+ +|...- ..+.... .........+ ..........+........|+.+-++.|+|.
T Consensus 22 ~l~vC~~Ca~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~g~~Ir~lRe~~GLSQ 100 (144)
T PRK06424 22 ILNVCDDCAKFGTPVIEHNKFKEVKEDIKVKLPEKKIIVPTYKKAYKK-YKKKASDEDLDIVEDYAELVKNARERLSMSQ 100 (144)
T ss_pred eeehhHHHHHcCCcccccCCCCcccccccccCccccccccccccCCCC-ccCcccHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 467889999999999998 555421 1000000 0000000000 0001111112223444557777888899999
Q ss_pred HHHHHHHH
Q 019173 267 AQLALAWV 274 (345)
Q Consensus 267 ~~~al~~~ 274 (345)
.++|-+--
T Consensus 101 ~eLA~~iG 108 (144)
T PRK06424 101 ADLAAKIF 108 (144)
T ss_pred HHHHHHhC
Confidence 98885443
No 94
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=40.24 E-value=77 Score=29.70 Aligned_cols=87 Identities=15% Similarity=0.160 Sum_probs=60.2
Q ss_pred cEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhcCCCeeEEecccccccc-ccccchhhHHHhhC
Q 019173 128 DLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWTR-DIENEIVPLCRELG 205 (345)
Q Consensus 128 Dl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~nl~~~-~~~~~~l~~~~~~g 205 (345)
++.++-.|-.. +-++.+.+|++...+. +.|=|.++...+..++....++++|+..+-.-. ..-.++...|+++|
T Consensus 199 ~~~~iEeP~~~----~~~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit~~~~~~~~A~~~g 274 (324)
T TIGR01928 199 QLLYIEEPFKI----DDLSMLDELAKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLTEVQKAIETCREHG 274 (324)
T ss_pred CCcEEECCCCh----hHHHHHHHHHhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHHHHHHHHHHHHHcC
Confidence 44555444322 2356677787776555 456677888999999988889999987664331 11268999999999
Q ss_pred CeEEeecCCCccc
Q 019173 206 IGIVPYSPLGRGF 218 (345)
Q Consensus 206 i~v~a~~pl~~G~ 218 (345)
+.++..+.+.+|+
T Consensus 275 i~~~~~~~~es~i 287 (324)
T TIGR01928 275 AKVWIGGMLETGI 287 (324)
T ss_pred CeEEEcceEcccH
Confidence 9999876665543
No 95
>PRK06740 histidinol-phosphatase; Validated
Probab=40.01 E-value=3.3e+02 Score=25.69 Aligned_cols=49 Identities=10% Similarity=0.109 Sum_probs=31.9
Q ss_pred HHHHHHHhhcCCCcccEEEeccCCC-----CC--------CH----HHHHHHHHHHHHcCCcceEec
Q 019173 113 SCCEASLKRLDVEYIDLYYQHRVDT-----SV--------PI----EETIGEMKKLVEEGKIKYIGL 162 (345)
Q Consensus 113 ~~v~~sL~~Lg~d~iDl~~lH~~~~-----~~--------~~----~~~~~~L~~L~~~G~ir~iGv 162 (345)
..+++.|+....||+ +.-+|..+. .. +. ..-++.+.++++.|.+..||=
T Consensus 156 ~~~~~~l~~~~~Dyv-IgSVH~i~g~~~~~~~~~~~~~~~~~~~~~~~Yf~~~~~~i~~~~fdvIgH 221 (331)
T PRK06740 156 QELQSLLALGDFDYV-IGSVHFLNGWGFDNPDTKEYFEEHDLYALYDTFFKTVECAIRSELFDIIAH 221 (331)
T ss_pred HHHHHHHhcCCCCEE-EEeeeEeCCcCCCCccHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCCEeeC
Confidence 455667777777887 778887541 11 11 123567888889998887763
No 96
>PRK05414 urocanate hydratase; Provisional
Probab=39.81 E-value=82 Score=31.45 Aligned_cols=140 Identities=16% Similarity=0.161 Sum_probs=83.9
Q ss_pred CCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeee--cCCCCC--------CCcHHHHHHHHHhc---CC
Q 019173 16 TQGLEVSKLGFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFD--TADKYG--------PYTNEILLGKALKM---LP 82 (345)
Q Consensus 16 ~tg~~vs~lg~G~~~~g~~~~~~~~~~~a~~~l~~A~~~Gi~~~D--TA~~Yg--------~g~sE~~lG~~l~~---~~ 82 (345)
+|...-|++.+--..+-..|. +.++ ++..-+.|+..+- ||-+|. .|.-|.++--+-+. ..
T Consensus 93 ~th~~APRVliaN~~lVp~wa---~~e~----f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~g~L 165 (556)
T PRK05414 93 KTHPDAPRVLIANSNLVPHWA---NWEH----FNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFGGDL 165 (556)
T ss_pred cCCCCCCeEEEEcCccccCCC---CHHH----HHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcCCCC
Confidence 344444555554433333353 2333 4455566766443 444331 13445444433332 25
Q ss_pred CCCeEEEeccccccCCcc---------ccccCCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHH
Q 019173 83 RENIQVATKFGFAELGLD---------AVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVE 153 (345)
Q Consensus 83 R~~~~i~tK~~~~~~~~~---------~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~ 153 (345)
+.++|+++=+|-.....+ ......++..|+ +|+.+.|+|.+ ..+++++++..++.++
T Consensus 166 ~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vEvd~~ri~-------kR~~~gyld~~-------~~~Ldeal~~~~~a~~ 231 (556)
T PRK05414 166 AGRLVLTAGLGGMGGAQPLAATMAGAVCLAVEVDESRID-------KRLRTGYLDEK-------ADDLDEALALAEEAKA 231 (556)
T ss_pred ceeEEEEecCCccccccHHHHHhcCceEEEEEECHHHHH-------HHHhCCcceeE-------cCCHHHHHHHHHHHHH
Confidence 678899888875432110 001123344444 57788888764 3568999999999999
Q ss_pred cCCcceEecCCCcHHHHHHHhcC
Q 019173 154 EGKIKYIGLSEASPDTIRRAHAV 176 (345)
Q Consensus 154 ~G~ir~iGvS~~~~~~l~~~~~~ 176 (345)
+|+...||+-..-.+.+.++++.
T Consensus 232 ~~~~~SIg~~GNaadv~~~l~~~ 254 (556)
T PRK05414 232 AGEPLSIGLLGNAADVLPELVRR 254 (556)
T ss_pred cCCceEEEEeccHHHHHHHHHHc
Confidence 99999999999888888888776
No 97
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=39.48 E-value=81 Score=31.36 Aligned_cols=140 Identities=16% Similarity=0.174 Sum_probs=84.3
Q ss_pred CCCccccccccccccCCCCCCCCCCHHHHHHHHHHHHHcCCCeee--cCCCCC--------CCcHHHHHHHHHhc---CC
Q 019173 16 TQGLEVSKLGFGCMSLSGGYNSPVSEEDGISIIKHAFNKGITFFD--TADKYG--------PYTNEILLGKALKM---LP 82 (345)
Q Consensus 16 ~tg~~vs~lg~G~~~~g~~~~~~~~~~~a~~~l~~A~~~Gi~~~D--TA~~Yg--------~g~sE~~lG~~l~~---~~ 82 (345)
+|...-|++.+--..+-..|. +.++ ++..-+.|+..+- ||-+|. .|.-|.++--+-+. ..
T Consensus 84 ~th~~APRVliaNs~lVp~wa---~~e~----f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~L 156 (545)
T TIGR01228 84 KTHENAPRVLIANSNLVPHWA---DWEH----FHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGSL 156 (545)
T ss_pred cCCCCCCeEEEEcCccccCCC---CHHH----HHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCCC
Confidence 344445666555444433353 2333 4455566766443 443331 13445444433332 35
Q ss_pred CCCeEEEeccccccCCcc---------ccccCCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHH
Q 019173 83 RENIQVATKFGFAELGLD---------AVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVE 153 (345)
Q Consensus 83 R~~~~i~tK~~~~~~~~~---------~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~ 153 (345)
+.++|+++=+|-.....+ ......++..|+ +|+.+.|+|.+ ..+++++++..++.++
T Consensus 157 ~G~~~lTaGLGGMgGAQPlA~~mag~v~i~vEvd~~ri~-------kR~~~gyld~~-------~~~ldeal~~~~~a~~ 222 (545)
T TIGR01228 157 KGKWVLTAGLGGMGGAQPLAVTMNGGVSIAVEVDESRID-------KRLETKYCDEQ-------TDSLDEALARAEEAKA 222 (545)
T ss_pred ceeEEEEeCCCccccccHHHHHHcCceEEEEEECHHHHH-------HHHhcCcceeE-------cCCHHHHHHHHHHHHH
Confidence 677888888775432110 001123344444 57788888764 3568999999999999
Q ss_pred cCCcceEecCCCcHHHHHHHhcC
Q 019173 154 EGKIKYIGLSEASPDTIRRAHAV 176 (345)
Q Consensus 154 ~G~ir~iGvS~~~~~~l~~~~~~ 176 (345)
+|+...||+-..-.+.+.++++.
T Consensus 223 ~~~~~SIg~~GNaadv~~~l~~r 245 (545)
T TIGR01228 223 EGKPISIGLLGNAAEVLPELLKR 245 (545)
T ss_pred cCCceEEEeeccHHHHHHHHHHc
Confidence 99999999999888888888876
No 98
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=39.20 E-value=3.3e+02 Score=25.49 Aligned_cols=134 Identities=11% Similarity=0.063 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHHcCCCeeec---CC-------CCCCC--cHHHHHHHHHhcCCCC--CeEEEeccccccCCccccccC
Q 019173 40 SEEDGISIIKHAFNKGITFFDT---AD-------KYGPY--TNEILLGKALKMLPRE--NIQVATKFGFAELGLDAVIVK 105 (345)
Q Consensus 40 ~~~~a~~~l~~A~~~Gi~~~DT---A~-------~Yg~g--~sE~~lG~~l~~~~R~--~~~i~tK~~~~~~~~~~~~~~ 105 (345)
++++..+..+.+.+.|+..||. ++ .+|.. ..-+.+.+.++. -|+ ++-|+.|+.....
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~a-v~~a~d~pv~vKiR~G~~-------- 145 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTE-VVNAVDVPVTLKIRTGWA-------- 145 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHH-HHHhcCCceEEEEEcccc--------
Confidence 6788888888888899999993 12 22321 224445544444 121 3457777743211
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCCCH--HHHHHHHHHHHHcCCcceEecCC-CcHHHHHHHhcCCCeeEE
Q 019173 106 GNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPI--EETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAV 182 (345)
Q Consensus 106 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~--~~~~~~L~~L~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~ 182 (345)
.+.... ..+-+.++..| +|.+.+|.-...... ..-|+.+.++++.=.|--||... .+.+.+.++++....+.+
T Consensus 146 ~~~~~~-~~~a~~le~~G---~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgV 221 (321)
T PRK10415 146 PEHRNC-VEIAQLAEDCG---IQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADAL 221 (321)
T ss_pred CCcchH-HHHHHHHHHhC---CCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEE
Confidence 111111 23444567778 466677865432111 12367777777766777777776 477888888877777888
Q ss_pred eccc
Q 019173 183 QLEW 186 (345)
Q Consensus 183 q~~~ 186 (345)
|+-=
T Consensus 222 miGR 225 (321)
T PRK10415 222 MIGR 225 (321)
T ss_pred EECh
Confidence 7743
No 99
>PRK05588 histidinol-phosphatase; Provisional
Probab=39.18 E-value=2.8e+02 Score=24.73 Aligned_cols=147 Identities=15% Similarity=0.154 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHcCCCeeecCCCCCCC-----cHHHHHHHHHhc---CCCCCeEEEeccccccCCccccccCCCHHHHH
Q 019173 41 EEDGISIIKHAFNKGITFFDTADKYGPY-----TNEILLGKALKM---LPRENIQVATKFGFAELGLDAVIVKGNPEYVR 112 (345)
Q Consensus 41 ~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g-----~sE~~lG~~l~~---~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~ 112 (345)
.....+++++|.+.|+..+ .++|.... .-..-+-..++. .+..++.+.--++. .++ ..
T Consensus 15 ~~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~~~i~~~~~~~I~~GiE~~~------------~~~-~~ 80 (255)
T PRK05588 15 KMKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYFNKYSKYRNNKLLLGIELGM------------EKD-LI 80 (255)
T ss_pred ccCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHHHHHHHHhcCCcceEEEecc------------cCC-CH
Confidence 3457899999999999998 87773110 000011122222 11223333222221 122 34
Q ss_pred HHHHHHHhhcCCCcccEEEeccCCCCC----------CHHHH----HHHHHHHHH-cCCcceEecCCCcHHHHHHHhcCC
Q 019173 113 SCCEASLKRLDVEYIDLYYQHRVDTSV----------PIEET----IGEMKKLVE-EGKIKYIGLSEASPDTIRRAHAVH 177 (345)
Q Consensus 113 ~~v~~sL~~Lg~d~iDl~~lH~~~~~~----------~~~~~----~~~L~~L~~-~G~ir~iGvS~~~~~~l~~~~~~~ 177 (345)
..+++.|++...||+ +.-+|..+... +.+++ ++.+.++++ .|++.-+|= +..+.+.....
T Consensus 81 ~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlgH----~Dl~~r~~~~~ 155 (255)
T PRK05588 81 EENKELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLGH----IDYISRYAKYE 155 (255)
T ss_pred HHHHHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCccC----HhHHHHcCccc
Confidence 566778887777777 78889854211 22333 356666665 455554442 12222211101
Q ss_pred CeeEEeccccccccccccchhhHHHhhCCeEEe
Q 019173 178 PITAVQLEWSLWTRDIENEIVPLCRELGIGIVP 210 (345)
Q Consensus 178 ~~~~~q~~~nl~~~~~~~~~l~~~~~~gi~v~a 210 (345)
.... .+.-. ...-.++++.|.++|+.+-.
T Consensus 156 ~~~~---~~~~~-~~~~~~il~~~~~~g~~lEI 184 (255)
T PRK05588 156 DKEI---YYDEF-KEIIDEILKVLIEKEKVLEI 184 (255)
T ss_pred cccc---cHHHH-HHHHHHHHHHHHHcCCEEEE
Confidence 0000 00001 11126788999999988754
No 100
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=39.12 E-value=74 Score=28.66 Aligned_cols=52 Identities=12% Similarity=0.103 Sum_probs=36.6
Q ss_pred cchhhHHHhhCCeEEeecCCCccccCCCCCCCCCCCCCccccCCCCCccchhhhHHHHHHHHHHHHHcCCC
Q 019173 195 NEIVPLCRELGIGIVPYSPLGRGFFGGKAVVESVPPDSFLNFLPRFTGENLDRNRSIYFRIENLAKKYKCT 265 (345)
Q Consensus 195 ~~~l~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s 265 (345)
...+++|+..|...+...|...|.. .-..+.++.....++++.++|+++|+.
T Consensus 93 ~~~i~~a~~lGa~~i~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~l~~~a~~~gv~ 144 (275)
T PRK09856 93 KLAMDMAKEMNAGYTLISAAHAGYL-------------------TPPNVIWGRLAENLSELCEYAENIGMD 144 (275)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCCC-------------------CCHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 5788999999999988776543210 001234566777888999999999874
No 101
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=39.10 E-value=2.8e+02 Score=27.68 Aligned_cols=67 Identities=7% Similarity=0.073 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHHHHcCCcce----EecCCCcHHHHHHHhcC---CCeeEEeccccccccccccchhhHHHhhCC
Q 019173 138 SVPIEETIGEMKKLVEEGKIKY----IGLSEASPDTIRRAHAV---HPITAVQLEWSLWTRDIENEIVPLCRELGI 206 (345)
Q Consensus 138 ~~~~~~~~~~L~~L~~~G~ir~----iGvS~~~~~~l~~~~~~---~~~~~~q~~~nl~~~~~~~~~l~~~~~~gi 206 (345)
....++..++++.+++.|..-. +|+-+.+.+.+++.++. .+++.+ .++.+.+.+..++.+.+++++.
T Consensus 319 ~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~~--~~~~~tP~PGT~l~~~~~~~~~ 392 (497)
T TIGR02026 319 GTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPDQA--NWLMYTPWPFTSLFGELSDRVE 392 (497)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCCce--EEEEecCCCCcHHHHHHHhhcc
Confidence 3456788999999999986433 36666666666554433 334433 3456666666788888888764
No 102
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=39.05 E-value=2.9e+02 Score=24.85 Aligned_cols=157 Identities=17% Similarity=0.139 Sum_probs=81.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeeecCCC-----------CCCCcHHHHHHHHHhcCCCCCeEEEeccccccCCccccccCCC
Q 019173 39 VSEEDGISIIKHAFNKGITFFDTADK-----------YGPYTNEILLGKALKMLPRENIQVATKFGFAELGLDAVIVKGN 107 (345)
Q Consensus 39 ~~~~~a~~~l~~A~~~Gi~~~DTA~~-----------Yg~g~sE~~lG~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~ 107 (345)
.+.++..++++...+.||..++.... |..-..++.+.+..+..+..++.+..-.+ ...
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~-----------~~~ 87 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPG-----------IGT 87 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCC-----------ccC
Confidence 47899999999999999999999721 21112455665554443333332221100 112
Q ss_pred HHHHHHHHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecC---CCcHHHHHHHhcC---CCeeE
Q 019173 108 PEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS---EASPDTIRRAHAV---HPITA 181 (345)
Q Consensus 108 ~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS---~~~~~~l~~~~~~---~~~~~ 181 (345)
.+.+ +.+++ .|++.+-++.- ..+...+.+.++.+++.|.--.+.++ .++++.+.++.+. .+.+.
T Consensus 88 ~~~i----~~a~~-~g~~~iri~~~-----~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~ 157 (263)
T cd07943 88 VDDL----KMAAD-LGVDVVRVATH-----CTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADC 157 (263)
T ss_pred HHHH----HHHHH-cCCCEEEEEec-----hhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCE
Confidence 3334 33333 36555544331 12345667788888888875555542 2455555443332 34444
Q ss_pred Eec--cccccccccccchhhHHHhh----CCeEEeecCCCc
Q 019173 182 VQL--EWSLWTRDIENEIVPLCREL----GIGIVPYSPLGR 216 (345)
Q Consensus 182 ~q~--~~nl~~~~~~~~~l~~~~~~----gi~v~a~~pl~~ 216 (345)
+.+ .+..+.+..-.+++..++++ -+++..+..++.
T Consensus 158 i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~Gl 198 (263)
T cd07943 158 VYVTDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGL 198 (263)
T ss_pred EEEcCCCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcch
Confidence 433 23333333225666666654 244455555543
No 103
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=38.85 E-value=1.9e+02 Score=23.95 Aligned_cols=23 Identities=13% Similarity=0.283 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHHcCCCeeecC
Q 019173 40 SEEDGISIIKHAFNKGITFFDTA 62 (345)
Q Consensus 40 ~~~~a~~~l~~A~~~Gi~~~DTA 62 (345)
-++.....++.|++.|.+.|++-
T Consensus 11 ~pent~~a~~~a~~~g~~~iE~D 33 (189)
T cd08556 11 APENTLAAFRKALEAGADGVELD 33 (189)
T ss_pred CCchHHHHHHHHHHcCCCEEEEE
Confidence 35788999999999999988754
No 104
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=38.76 E-value=2.9e+02 Score=24.68 Aligned_cols=88 Identities=10% Similarity=0.054 Sum_probs=49.0
Q ss_pred HHhhcCCCcccEEEeccCCCCCCHH-HHHHHHHHHHHcCCcceEecCC-CcHHHHHHHhcCCCeeEEeccccccccc-cc
Q 019173 118 SLKRLDVEYIDLYYQHRVDTSVPIE-ETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQLEWSLWTRD-IE 194 (345)
Q Consensus 118 sL~~Lg~d~iDl~~lH~~~~~~~~~-~~~~~L~~L~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~nl~~~~-~~ 194 (345)
.+..+| +|-+.+|..+...... --|+.+.++.+.-.+.-|.-.. .+.+.+.++.+....+.+.+---+.... ..
T Consensus 161 ~~~~~g---~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~ 237 (253)
T PRK02083 161 EVEELG---AGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITI 237 (253)
T ss_pred HHHHcC---CCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCH
Confidence 345556 5666777654421110 0256666666655566665554 4667777777655555444421121111 12
Q ss_pred cchhhHHHhhCCeE
Q 019173 195 NEIVPLCRELGIGI 208 (345)
Q Consensus 195 ~~~l~~~~~~gi~v 208 (345)
.++++.|++.||.+
T Consensus 238 ~~~~~~~~~~~~~~ 251 (253)
T PRK02083 238 GELKAYLAEQGIPV 251 (253)
T ss_pred HHHHHHHHHCCCcc
Confidence 67889999988865
No 105
>PF11242 DUF2774: Protein of unknown function (DUF2774); InterPro: IPR021404 This entry is represented by Bacteriophage T4, Gp24.3; it is a family of uncharacterised viral proteins.
Probab=37.75 E-value=45 Score=23.09 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.6
Q ss_pred HHHHHHHHcCCChHHHHHHHHH
Q 019173 254 RIENLAKKYKCTSAQLALAWVL 275 (345)
Q Consensus 254 ~l~~ia~~~g~s~~~~al~~~l 275 (345)
-+.+||+.+|+++.++|..|+.
T Consensus 15 ~FveIAr~~~i~a~e~a~~w~~ 36 (63)
T PF11242_consen 15 SFVEIARKIGITAKEVAKAWAE 36 (63)
T ss_pred cHHHHHHHhCCCHHHHHHHHHH
Confidence 4678999999999999999985
No 106
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=37.69 E-value=1.9e+02 Score=27.66 Aligned_cols=60 Identities=18% Similarity=0.153 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEecc-CCCC-----------CC-HH---HH-HHHHHHHHHcCCcceEecCCCc
Q 019173 105 KGNPEYVRSCCEASLKRLDVEYIDLYYQHR-VDTS-----------VP-IE---ET-IGEMKKLVEEGKIKYIGLSEAS 166 (345)
Q Consensus 105 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~-~~~~-----------~~-~~---~~-~~~L~~L~~~G~ir~iGvS~~~ 166 (345)
.-+.+.+.+.++..++ |+.++|.+|.+.- |... .+ .+ +. ..+.+.|.+.|- .++++|||.
T Consensus 166 gqt~~~~~~~l~~~~~-l~~~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yeis~fa 242 (370)
T PRK06294 166 TQSLSDFIVDLHQAIT-LPITHISLYNLTIDPHTSFYKHRKRLLPSIADEEILAEMSLAAEELLTSQGF-TRYELASYA 242 (370)
T ss_pred CCCHHHHHHHHHHHHc-cCCCeEEEeeeEecCCChHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCC-Ceeeeeeee
Confidence 4578888888888764 8899999988853 2210 01 11 22 234566777776 447888885
No 107
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=37.68 E-value=2.1e+02 Score=25.86 Aligned_cols=105 Identities=15% Similarity=0.161 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEeccCCC-----CCCHHHHHHHHHHHHHc-CCcceEecC---CCcHHHHHHHhc
Q 019173 105 KGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDT-----SVPIEETIGEMKKLVEE-GKIKYIGLS---EASPDTIRRAHA 175 (345)
Q Consensus 105 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~-----~~~~~~~~~~L~~L~~~-G~ir~iGvS---~~~~~~l~~~~~ 175 (345)
.++.+.. .++-+.|.++|+++|.+-+...... ......-++.++.+++. ...+...+. ..+...++.+.+
T Consensus 18 ~~~~~~k-~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~ 96 (263)
T cd07943 18 QFTLEQV-RAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAAD 96 (263)
T ss_pred ecCHHHH-HHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccCHHHHHHHHH
Confidence 3455554 4556669999999999986532110 00011234455555332 346665554 234566666655
Q ss_pred CCCeeEEeccccccccccccchhhHHHhhCCeEEee
Q 019173 176 VHPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPY 211 (345)
Q Consensus 176 ~~~~~~~q~~~nl~~~~~~~~~l~~~~~~gi~v~a~ 211 (345)
. .++.+.+-++.-+.+.-.+.+++++++|+.+...
T Consensus 97 ~-g~~~iri~~~~s~~~~~~~~i~~ak~~G~~v~~~ 131 (263)
T cd07943 97 L-GVDVVRVATHCTEADVSEQHIGAARKLGMDVVGF 131 (263)
T ss_pred c-CCCEEEEEechhhHHHHHHHHHHHHHCCCeEEEE
Confidence 4 4565555333322222267889999999876653
No 108
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=37.35 E-value=1.1e+02 Score=27.06 Aligned_cols=97 Identities=20% Similarity=0.191 Sum_probs=54.5
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhc---CCCeeEE
Q 019173 106 GNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHA---VHPITAV 182 (345)
Q Consensus 106 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~---~~~~~~~ 182 (345)
++.+. +..+-+.|.++|+++|.+- .|.......+.++.+.+.... .+-.+++......++...+ ...++.+
T Consensus 11 ~~~~~-k~~i~~~L~~~Gv~~iEvg---~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~g~~~i 84 (237)
T PF00682_consen 11 FSTEE-KLEIAKALDEAGVDYIEVG---FPFASEDDFEQVRRLREALPN--ARLQALCRANEEDIERAVEAAKEAGIDII 84 (237)
T ss_dssp --HHH-HHHHHHHHHHHTTSEEEEE---HCTSSHHHHHHHHHHHHHHHS--SEEEEEEESCHHHHHHHHHHHHHTTSSEE
T ss_pred cCHHH-HHHHHHHHHHhCCCEEEEc---ccccCHHHHHHhhhhhhhhcc--cccceeeeehHHHHHHHHHhhHhccCCEE
Confidence 44444 4455567999999999888 332222233455666666666 4444555555555555443 2344444
Q ss_pred eccccccc--c------------ccccchhhHHHhhCCeE
Q 019173 183 QLEWSLWT--R------------DIENEIVPLCRELGIGI 208 (345)
Q Consensus 183 q~~~nl~~--~------------~~~~~~l~~~~~~gi~v 208 (345)
.+..+.-+ . +.-.+.+.+++++|+.+
T Consensus 85 ~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v 124 (237)
T PF00682_consen 85 RIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEV 124 (237)
T ss_dssp EEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred EecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCce
Confidence 44332222 1 11157899999999999
No 109
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=36.91 E-value=2.7e+02 Score=23.91 Aligned_cols=149 Identities=16% Similarity=0.140 Sum_probs=82.5
Q ss_pred CHHHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhc----CCCCCeEEEeccccccCCccccccCCCHHHHHHHH
Q 019173 40 SEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKM----LPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCC 115 (345)
Q Consensus 40 ~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~----~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v 115 (345)
|..++.+.+..+++.|+...|.- +..+-.+++. -.+++++++--. ...+.+++.+
T Consensus 9 D~~~~~~~v~~~l~~g~~~~~i~--------~~~l~p~m~~vG~~w~~~~i~va~e~-------------~as~~~~~~l 67 (201)
T cd02070 9 DEEETVELVKKALEAGIDPQDII--------EEGLAPGMDIVGDKYEEGEIFVPELL-------------MAADAMKAGL 67 (201)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHH--------HHHHHHHHHHHHHHHccCCeeHHHHH-------------HHHHHHHHHH
Confidence 78999999999999997654422 3444444443 133344432211 1233445555
Q ss_pred HHHHhhcCCCc---ccEEEeccCCCCCCHHHHHHHHHHHHHcCC-cceEecCCCcHHHHHHHhcCCCeeEEecccccccc
Q 019173 116 EASLKRLDVEY---IDLYYQHRVDTSVPIEETIGEMKKLVEEGK-IKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWTR 191 (345)
Q Consensus 116 ~~sL~~Lg~d~---iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~-ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~nl~~~ 191 (345)
......+.... ---+++-.+..+.+--...-.-.-|+..|. |.++| .+.+.+.+...+....++++-+.++....
T Consensus 68 ~~l~~~~~~~~~~~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG-~~~p~~~l~~~~~~~~~d~v~lS~~~~~~ 146 (201)
T cd02070 68 DLLKPLLGKSKSAKKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLG-RDVPPEEFVEAVKEHKPDILGLSALMTTT 146 (201)
T ss_pred HHHHHHHhhcCCCCCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECC-CCCCHHHHHHHHHHcCCCEEEEecccccc
Confidence 55444444322 123455555444333222222334667775 35667 45567777777777777887776654443
Q ss_pred cc-ccchhhHHHhhC----CeEEe
Q 019173 192 DI-ENEIVPLCRELG----IGIVP 210 (345)
Q Consensus 192 ~~-~~~~l~~~~~~g----i~v~a 210 (345)
-. -.++++.+++.+ +.++.
T Consensus 147 ~~~~~~~i~~lr~~~~~~~~~i~v 170 (201)
T cd02070 147 MGGMKEVIEALKEAGLRDKVKVMV 170 (201)
T ss_pred HHHHHHHHHHHHHCCCCcCCeEEE
Confidence 22 267788888775 45554
No 110
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=36.54 E-value=2.5e+02 Score=25.47 Aligned_cols=105 Identities=12% Similarity=0.173 Sum_probs=60.2
Q ss_pred cCCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCC------CHHHHHHHHHHHHHcCCcceEecCCCc---HHHHHHHh
Q 019173 104 VKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSV------PIEETIGEMKKLVEEGKIKYIGLSEAS---PDTIRRAH 174 (345)
Q Consensus 104 ~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~------~~~~~~~~L~~L~~~G~ir~iGvS~~~---~~~l~~~~ 174 (345)
..++.+.. ..+-+.|.++|+++|++-+........ .-.+.++.+.++.+ +..+..+++... .+.+..+.
T Consensus 15 ~~f~~~~~-~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~a~ 92 (266)
T cd07944 15 WDFGDEFV-KAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSK-GNTKIAVMVDYGNDDIDLLEPAS 92 (266)
T ss_pred ccCCHHHH-HHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhc-cCCEEEEEECCCCCCHHHHHHHh
Confidence 34566655 456666999999999998765533210 11455666555543 245555655433 45555544
Q ss_pred cCCCeeEEeccccccccccccchhhHHHhhCCeEEee
Q 019173 175 AVHPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPY 211 (345)
Q Consensus 175 ~~~~~~~~q~~~nl~~~~~~~~~l~~~~~~gi~v~a~ 211 (345)
+ ..++.+.+.+..-.-+.-.+.+++++++|+.|...
T Consensus 93 ~-~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~ 128 (266)
T cd07944 93 G-SVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFN 128 (266)
T ss_pred c-CCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEE
Confidence 3 33555444333222221267889999999877653
No 111
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=36.49 E-value=3.2e+02 Score=26.29 Aligned_cols=87 Identities=13% Similarity=0.244 Sum_probs=56.6
Q ss_pred EEEeccCCCC-----------CCHHHHHHHHHHHHHcCCcceEec-----C--CCcHHH---HHHHhcCC------CeeE
Q 019173 129 LYYQHRVDTS-----------VPIEETIGEMKKLVEEGKIKYIGL-----S--EASPDT---IRRAHAVH------PITA 181 (345)
Q Consensus 129 l~~lH~~~~~-----------~~~~~~~~~L~~L~~~G~ir~iGv-----S--~~~~~~---l~~~~~~~------~~~~ 181 (345)
.+-||.|+.. .+++++++++.+..++-. |.|-+ . |.+.++ |.+++.-. +..+
T Consensus 231 AiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~-rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~V 309 (371)
T PRK14461 231 AISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTR-RRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHV 309 (371)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhC-CEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEE
Confidence 3678999652 357889999888865433 23322 1 344444 44445444 5689
Q ss_pred Eeccccccccc----cc----cchhhHHHhhCCeEEeecCCCc
Q 019173 182 VQLEWSLWTRD----IE----NEIVPLCRELGIGIVPYSPLGR 216 (345)
Q Consensus 182 ~q~~~nl~~~~----~~----~~~l~~~~~~gi~v~a~~pl~~ 216 (345)
+.++||+.... +. ....+.++++||.+......+.
T Consensus 310 NLIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~ 352 (371)
T PRK14461 310 NLIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGV 352 (371)
T ss_pred EEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCc
Confidence 99999986532 11 4556667789999999888765
No 112
>PRK14017 galactonate dehydratase; Provisional
Probab=36.39 E-value=2e+02 Score=27.60 Aligned_cols=70 Identities=14% Similarity=0.165 Sum_probs=52.4
Q ss_pred HHHHHHHHHcCCcc-eEecCCCcHHHHHHHhcCCCeeEEecccccccc-ccccchhhHHHhhCCeEEeecCC
Q 019173 145 IGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWTR-DIENEIVPLCRELGIGIVPYSPL 214 (345)
Q Consensus 145 ~~~L~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~nl~~~-~~~~~~l~~~~~~gi~v~a~~pl 214 (345)
++.+.+|++...+. ..|=|.++...+..+++...++++|+..+..-- ..-.++.+.|+++||.++.++..
T Consensus 217 ~~~~~~L~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~~ 288 (382)
T PRK14017 217 AEALPEIAAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCPL 288 (382)
T ss_pred HHHHHHHHhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCCC
Confidence 46677888877665 445566888889999888888999987665421 11268999999999999987554
No 113
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=36.01 E-value=3.7e+02 Score=25.13 Aligned_cols=95 Identities=16% Similarity=0.167 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeeecCCCCCCCc------HHHHHHHHHhcCC-CCCeEEEeccccccCCccccccCCCHHHH
Q 019173 39 VSEEDGISIIKHAFNKGITFFDTADKYGPYT------NEILLGKALKMLP-RENIQVATKFGFAELGLDAVIVKGNPEYV 111 (345)
Q Consensus 39 ~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~------sE~~lG~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~~~~~i 111 (345)
.+.++..++++.+.+.|+..|--+ | |. -++++.. +++.. ..++.|+|-... +
T Consensus 45 ls~eei~~li~~~~~~Gv~~I~~t---G-GEPllr~dl~~li~~-i~~~~~l~~i~itTNG~l----------------l 103 (329)
T PRK13361 45 LSLEELAWLAQAFTELGVRKIRLT---G-GEPLVRRGCDQLVAR-LGKLPGLEELSLTTNGSR----------------L 103 (329)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE---C-cCCCccccHHHHHHH-HHhCCCCceEEEEeChhH----------------H
Confidence 578999999999999999877543 3 21 1222222 22211 124555554211 2
Q ss_pred HHHHHHHHhhcCCCcccEEEeccCCCC--------CCHHHHHHHHHHHHHcCC
Q 019173 112 RSCCEASLKRLDVEYIDLYYQHRVDTS--------VPIEETIGEMKKLVEEGK 156 (345)
Q Consensus 112 ~~~v~~sL~~Lg~d~iDl~~lH~~~~~--------~~~~~~~~~L~~L~~~G~ 156 (345)
.+ .-+.|...|++++- +-|+..++. ..++.+++.++.+++.|.
T Consensus 104 ~~-~~~~L~~aGl~~v~-ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi 154 (329)
T PRK13361 104 AR-FAAELADAGLKRLN-ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGF 154 (329)
T ss_pred HH-HHHHHHHcCCCeEE-EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCC
Confidence 22 34556667777654 344554332 236778888888888774
No 114
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=35.86 E-value=84 Score=27.84 Aligned_cols=100 Identities=20% Similarity=0.285 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHHcCCcceEec----CCCcHHHHHHHhcCCCeeEEeccccccccccccchhhHHHhhCCeEEeecCCC
Q 019173 140 PIEETIGEMKKLVEEGKIKYIGL----SEASPDTIRRAHAVHPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLG 215 (345)
Q Consensus 140 ~~~~~~~~L~~L~~~G~ir~iGv----S~~~~~~l~~~~~~~~~~~~q~~~nl~~~~~~~~~l~~~~~~gi~v~a~~pl~ 215 (345)
..+++.++|..|+ +.+|.. |.+....++.+.+...+.++-. ++.++ ..+++...-+.|..++.-+.-+
T Consensus 74 eve~L~~~l~~l~----~d~iv~GaI~s~yqk~rve~lc~~lGl~~~~P---LWg~d-~~ell~e~~~~Gf~~~Iv~Vsa 145 (223)
T COG2102 74 EVEELKEALRRLK----VDGIVAGAIASEYQKERVERLCEELGLKVYAP---LWGRD-PEELLEEMVEAGFEAIIVAVSA 145 (223)
T ss_pred hHHHHHHHHHhCc----ccEEEEchhhhHHHHHHHHHHHHHhCCEEeec---ccCCC-HHHHHHHHHHcCCeEEEEEEec
Confidence 4667777777777 555544 3445566777777766665322 33334 3688888889998888877777
Q ss_pred ccccCCCCCCCCCCCCCccccCCCCCccchhhhHHHHHHHHHHHHHcCCChH
Q 019173 216 RGFFGGKAVVESVPPDSFLNFLPRFTGENLDRNRSIYFRIENLAKKYKCTSA 267 (345)
Q Consensus 216 ~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~ 267 (345)
.|+-.. ++ ..++ ....++.+..+.+++|+.++
T Consensus 146 ~gL~~~----------~l---Gr~i-------~~~~~e~l~~l~~~ygi~~~ 177 (223)
T COG2102 146 EGLDES----------WL---GRRI-------DREFLEELKSLNRRYGIHPA 177 (223)
T ss_pred cCCChH----------Hh---CCcc-------CHHHHHHHHHHHHhcCCCcc
Confidence 775210 00 0001 12445688999999998764
No 115
>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]
Probab=35.79 E-value=3e+02 Score=24.53 Aligned_cols=155 Identities=15% Similarity=0.182 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHcCCCeeecCCCCCC---CcHHHHHHHHHhc--CCCCCeEEEeccccccCCccccccCCCHHHHHHHHHH
Q 019173 43 DGISIIKHAFNKGITFFDTADKYGP---YTNEILLGKALKM--LPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEA 117 (345)
Q Consensus 43 ~a~~~l~~A~~~Gi~~~DTA~~Yg~---g~sE~~lG~~l~~--~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~ 117 (345)
...+++.+|.+.|+..|=+.+|.-. +..++.+-...+. ...+.+-|.--.|.... ..+.....-...
T Consensus 17 ~~~e~~~~A~~~g~~~~~iTdH~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~G~E~~--------~~~~~~~d~~~~ 88 (237)
T COG1387 17 TPEEMVEAAIELGLEYIAITDHAPFLRVGLDAELLKYFIEEIRELKKEYDIKILIGIEVD--------ILPDGSLDFLDE 88 (237)
T ss_pred CHHHHHHHHHHcCCeEEEEeccccccccCCCHHHHHHHHHHHHHHHHhcCceEEEeEEEE--------ecCCCCcccchh
Confidence 3455699999999999988887665 5455555444432 01111112222232210 001111111112
Q ss_pred HHhhcCCCcccEEEeccCCC-CCCHHHHHHHHHHHHHcCCcceEecCCCc-------------HHHHHHHhcCCCeeEEe
Q 019173 118 SLKRLDVEYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLSEAS-------------PDTIRRAHAVHPITAVQ 183 (345)
Q Consensus 118 sL~~Lg~d~iDl~~lH~~~~-~~~~~~~~~~L~~L~~~G~ir~iGvS~~~-------------~~~l~~~~~~~~~~~~q 183 (345)
.+..| |+ =+.-+|.+.. +.......+.+..+...+.|.-||=-+.. ...+.+++.... .++.
T Consensus 89 ~~~~l--D~-vi~svH~~~~~~~~~~~~~~~~~~a~~~~~v~il~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~ale 164 (237)
T COG1387 89 ILKEL--DY-VIASVHELNFEDQDEEDYTERLIAAMSNGAVDILAHPGGRLLGRIDRGAYKEDIEELIELAEKNG-KALE 164 (237)
T ss_pred hHhhc--CE-EEEEeccCCccccCHHHHHHHHHHHHcCCCccEEecCCccccccccccccHHHHHHHHHHHHHhC-cEEe
Confidence 22223 22 3456788632 23456678889999999999988766542 222333333333 2233
Q ss_pred ccccccccccccchhhHHHhhCCeEE
Q 019173 184 LEWSLWTRDIENEIVPLCRELGIGIV 209 (345)
Q Consensus 184 ~~~nl~~~~~~~~~l~~~~~~gi~v~ 209 (345)
+.-+.-..++...++..|++.|+.+.
T Consensus 165 ins~~~~~~~~~~~~~~~~e~G~~~~ 190 (237)
T COG1387 165 INSRPGRLDPNSEILRLARELGVKLA 190 (237)
T ss_pred ecCCcCccCchHHHHHHHHHhCCeEE
Confidence 33332222334688999999988765
No 116
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=35.53 E-value=2e+02 Score=25.42 Aligned_cols=75 Identities=16% Similarity=0.136 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHHcCCCeeecCCCCC-CCcHHHHHHHHHhcCCCCCeEEEeccccccCCccccccCCCHHHHHHHHHH
Q 019173 39 VSEEDGISIIKHAFNKGITFFDTADKYG-PYTNEILLGKALKMLPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEA 117 (345)
Q Consensus 39 ~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg-~g~sE~~lG~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~ 117 (345)
.+.++..++.+.+.+.|..||=|+..|+ .|.+.+.+....+. -+.++-|-.=.|. .+.+...+-++.
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~-~~~~~~IKasGGI-----------rt~~~a~~~i~a 200 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRET-VGPRVGVKASGGI-----------RTLEDALAMIEA 200 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHH-hCCCceEEeeCCc-----------CCHHHHHHHHHc
Confidence 3678899999999999999999999885 45666666555544 2222222111121 245556666655
Q ss_pred HHhhcCCC
Q 019173 118 SLKRLDVE 125 (345)
Q Consensus 118 sL~~Lg~d 125 (345)
--.|+||.
T Consensus 201 GA~riGtS 208 (221)
T PRK00507 201 GATRLGTS 208 (221)
T ss_pred CcceEccC
Confidence 55666654
No 117
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=35.25 E-value=3.9e+02 Score=25.23 Aligned_cols=24 Identities=13% Similarity=0.146 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeeecC
Q 019173 39 VSEEDGISIIKHAFNKGITFFDTA 62 (345)
Q Consensus 39 ~~~~~a~~~l~~A~~~Gi~~~DTA 62 (345)
.+.++..++++..-++||..|+.+
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEee
Confidence 478999999999999999999985
No 118
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=35.18 E-value=1e+02 Score=28.66 Aligned_cols=133 Identities=17% Similarity=0.130 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHHcCCCeee----------cCCCCCCC--cHHHHHHHHHhcCC-CCCeEEEeccccccCCccccccCC
Q 019173 40 SEEDGISIIKHAFNKGITFFD----------TADKYGPY--TNEILLGKALKMLP-RENIQVATKFGFAELGLDAVIVKG 106 (345)
Q Consensus 40 ~~~~a~~~l~~A~~~Gi~~~D----------TA~~Yg~g--~sE~~lG~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~ 106 (345)
+++...+..+.+.+.|+..|| +...||.+ +.-..+.+.++... .-.+-|+.|+-... +.
T Consensus 64 ~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~--------~~ 135 (309)
T PF01207_consen 64 DPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGW--------DD 135 (309)
T ss_dssp -HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESEC--------T-
T ss_pred cHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEeccccc--------cc
Confidence 678888888888888999999 34456644 45566666665511 11256666765432 11
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEeccCCCCCCH--HHHHHHHHHHHHcCCcceEecCC-CcHHHHHHHhcCCCeeEEe
Q 019173 107 NPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPI--EETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQ 183 (345)
Q Consensus 107 ~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~--~~~~~~L~~L~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q 183 (345)
+.+... .+-+.|+..| +|.+-+|.-...... ..-|+.+.++++.=.|--||=.+ ++.+.+.+.++....+-++
T Consensus 136 ~~~~~~-~~~~~l~~~G---~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvM 211 (309)
T PF01207_consen 136 SPEETI-EFARILEDAG---VSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVM 211 (309)
T ss_dssp -CHHHH-HHHHHHHHTT-----EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEE
T ss_pred chhHHH-HHHHHhhhcc---cceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEE
Confidence 233333 3555777787 799999986544322 34577777777776665555444 4667777777665666665
Q ss_pred c
Q 019173 184 L 184 (345)
Q Consensus 184 ~ 184 (345)
+
T Consensus 212 i 212 (309)
T PF01207_consen 212 I 212 (309)
T ss_dssp E
T ss_pred E
Confidence 5
No 119
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=35.14 E-value=2.3e+02 Score=26.83 Aligned_cols=81 Identities=10% Similarity=0.081 Sum_probs=54.8
Q ss_pred cEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhcCCCeeEEecccccccc-ccccchhhHHHhhC
Q 019173 128 DLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWTR-DIENEIVPLCRELG 205 (345)
Q Consensus 128 Dl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~nl~~~-~~~~~~l~~~~~~g 205 (345)
++.++-.|-+.. -++.+.+|+++.-+. +.|=|.++...+..++....++++|+.....-. ..-.++.+.|+++|
T Consensus 203 ~i~~iEeP~~~~----d~~~~~~L~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GGit~~~~~~~lA~~~g 278 (352)
T cd03325 203 RLLFIEEPVLPE----NVEALAEIAARTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGGITELKKIAAMAEAYD 278 (352)
T ss_pred CCcEEECCCCcc----CHHHHHHHHHhCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCCHHHHHHHHHHHHHcC
Confidence 444454443322 257778888876655 344456788888888877778999987654321 11268999999999
Q ss_pred CeEEeec
Q 019173 206 IGIVPYS 212 (345)
Q Consensus 206 i~v~a~~ 212 (345)
|.++.++
T Consensus 279 i~~~~h~ 285 (352)
T cd03325 279 VALAPHC 285 (352)
T ss_pred CcEeccC
Confidence 9998654
No 120
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=35.04 E-value=4.7e+02 Score=26.07 Aligned_cols=104 Identities=16% Similarity=0.191 Sum_probs=65.2
Q ss_pred cCCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHH----cCCcceEecCC--CcHHHHHHHhcCC
Q 019173 104 VKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVE----EGKIKYIGLSE--ASPDTIRRAHAVH 177 (345)
Q Consensus 104 ~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~----~G~ir~iGvS~--~~~~~l~~~~~~~ 177 (345)
...+.+.|.+.++. +.++|...+-|+-=..| +..+++.+.+.++.+++ .|.++.|+|+- .+.++++++.+..
T Consensus 113 ~~Ls~EEI~~ea~~-~~~~G~~~i~LvsGe~p-~~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~LkeaG 190 (469)
T PRK09613 113 KKLTQEEIREEVKA-LEDMGHKRLALVAGEDP-PNCDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKEAG 190 (469)
T ss_pred eECCHHHHHHHHHH-HHHCCCCEEEEEeCCCC-CCCCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHHcC
Confidence 34689999999986 57799777655422222 23456767777777765 57787777754 5677787776653
Q ss_pred --CeeEEeccccc-----ccc-----cc--ccchhhHHHhhCCeEE
Q 019173 178 --PITAVQLEWSL-----WTR-----DI--ENEIVPLCRELGIGIV 209 (345)
Q Consensus 178 --~~~~~q~~~nl-----~~~-----~~--~~~~l~~~~~~gi~v~ 209 (345)
...++|-.||. +++ +. .-+.++.+++.||.-+
T Consensus 191 v~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~V 236 (469)
T PRK09613 191 IGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDV 236 (469)
T ss_pred CCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCee
Confidence 34455555541 111 11 1467888889998733
No 121
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=34.90 E-value=3.1e+02 Score=24.01 Aligned_cols=73 Identities=16% Similarity=0.160 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHHcCCCeeecCCCCC-CCcHH---HHHHHHHhcCCCCCeEEEeccccccCCccccccCCCHHHHHHHH
Q 019173 40 SEEDGISIIKHAFNKGITFFDTADKYG-PYTNE---ILLGKALKMLPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCC 115 (345)
Q Consensus 40 ~~~~a~~~l~~A~~~Gi~~~DTA~~Yg-~g~sE---~~lG~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v 115 (345)
+.++...+.+.+.++|..|+=|+..|+ .|-+. +.+.+.++. . +-.|..- | .+ +.+...+-+
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~~----~--v~IKaaG----G----ir-t~~~a~~~i 194 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVGD----T--IGVKASG----G----VR-TAEDAIAMI 194 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhcc----C--CeEEEeC----C----CC-CHHHHHHHH
Confidence 567888999999999999999999887 33332 334444432 1 2334321 1 12 678888888
Q ss_pred HHHHhhcCCCcc
Q 019173 116 EASLKRLDVEYI 127 (345)
Q Consensus 116 ~~sL~~Lg~d~i 127 (345)
+.--.|+|+++.
T Consensus 195 ~aGa~riGts~~ 206 (211)
T TIGR00126 195 EAGASRIGASAG 206 (211)
T ss_pred HHhhHHhCcchH
Confidence 888899998753
No 122
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=34.14 E-value=3.7e+02 Score=24.99 Aligned_cols=148 Identities=16% Similarity=0.110 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhhcCCCcccEEEeccCCCCC----CHHHHHHHHHHHHHcCCcceEecCCCcHHHHHH-HhcCCCeeEE
Q 019173 108 PEYVRSCCEASLKRLDVEYIDLYYQHRVDTSV----PIEETIGEMKKLVEEGKIKYIGLSEASPDTIRR-AHAVHPITAV 182 (345)
Q Consensus 108 ~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~----~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~-~~~~~~~~~~ 182 (345)
.+.+++.+.+-+++.|+|++=++.+-.-.... ...+++++|++..+++.=. -++.++-. +.-..+..++
T Consensus 131 ~e~~~~DI~~f~~~~~~d~vVvvn~asTE~~~~~~~~~~~t~~~l~~al~~~~~~------~~aS~~YA~AAl~~g~~fv 204 (295)
T PF07994_consen 131 VEQIREDIRDFKKENGLDRVVVVNVASTERYIPVIPGVHDTLEALEKALDENDPE------ISASMLYAYAALEAGVPFV 204 (295)
T ss_dssp HHHHHHHHHHHHHHTT-SCEEEEE-SSCC-S---CCCCCSSHHHHHHHHHTT-TT------HHHHHHHHHHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEECCCCCCCCCCCccccCCHHHHHHHhhcCCCc------CChHHHHHHHHHHCCCCeE
Confidence 57788999999999998866555554433311 2234688888888866532 22333222 1112344433
Q ss_pred eccccccccccccchhhHHHhhCCeEEeecCCCccccCCCCCCCCCCCCCccccCCCCCccchhhhHHHHHHHHHHHHHc
Q 019173 183 QLEWSLWTRDIENEIVPLCRELGIGIVPYSPLGRGFFGGKAVVESVPPDSFLNFLPRFTGENLDRNRSIYFRIENLAKKY 262 (345)
Q Consensus 183 q~~~nl~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~ 262 (345)
-..=+.... ...+.+.++++|+.+..-. +...+.....--+-++.++|.+.
T Consensus 205 N~tP~~~a~--~P~l~ela~~~gvpi~GdD---------------------------~KT~lAAplvlDLirl~~la~r~ 255 (295)
T PF07994_consen 205 NGTPSNIAD--DPALVELAEEKGVPIAGDD---------------------------GKTPLAAPLVLDLIRLAKLALRR 255 (295)
T ss_dssp E-SSSTTTT--SHHHHHHHHHHTEEEEESS---------------------------BS-HHHHHHHHHHHHHHHHHHHT
T ss_pred eccCccccC--CHHHHHHHHHcCCCeecch---------------------------HhhhhhhHHHHHHHHHHHHHHHc
Confidence 222222221 2589999999999987410 11122233444455889999999
Q ss_pred CCChHHHHHHHHHhCCCCeEeecCCCCHHHH
Q 019173 263 KCTSAQLALAWVLEQGDDVVPIPGTTKIKNL 293 (345)
Q Consensus 263 g~s~~~~al~~~l~~~~v~~vivg~~~~~~l 293 (345)
|+.-.+-.++|....|. +=.|......+
T Consensus 256 g~~Gv~~~ls~ffK~P~---~~~g~~~~~~l 283 (295)
T PF07994_consen 256 GMGGVQEWLSFFFKSPM---VPPGPPQEHDL 283 (295)
T ss_dssp TS-EEHHHHHHHBSS-T-----TTSTT--HH
T ss_pred CCCChhHHHHHHhcCCC---ccCCCCCCCcH
Confidence 99889999999999996 33666665555
No 123
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=33.90 E-value=1.2e+02 Score=26.56 Aligned_cols=93 Identities=15% Similarity=0.194 Sum_probs=57.5
Q ss_pred HHHHhhcCCCcccEEEec-cCCCC-CC----HHHHHHHHHHHHH--cCCcceEecCCCcHHHHHHHhcCCCeeEEecccc
Q 019173 116 EASLKRLDVEYIDLYYQH-RVDTS-VP----IEETIGEMKKLVE--EGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWS 187 (345)
Q Consensus 116 ~~sL~~Lg~d~iDl~~lH-~~~~~-~~----~~~~~~~L~~L~~--~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~n 187 (345)
-..+..-|.++||+---- +|... .+ ++.+...++.+++ .+. -|.+-+++++.++.+++. ..+++-.-.+
T Consensus 25 a~~~~~~GAdiIDIg~~st~p~~~~v~~~eE~~rl~~~l~~i~~~~~~~--plSIDT~~~~v~~~aL~~-g~~~ind~~~ 101 (210)
T PF00809_consen 25 AREQVEAGADIIDIGAESTRPGATPVSEEEEMERLVPVLQAIREENPDV--PLSIDTFNPEVAEAALKA-GADIINDISG 101 (210)
T ss_dssp HHHHHHTT-SEEEEESSTSSTTSSSSHHHHHHHHHHHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHH-TSSEEEETTT
T ss_pred HHHHHHhcCCEEEecccccCCCCCcCCHHHHHHHHHHHHHHHhccCCCe--EEEEECCCHHHHHHHHHc-CcceEEeccc
Confidence 334556788999986432 33221 12 2335555666665 233 467778999999999887 4444333222
Q ss_pred ccccccccchhhHHHhhCCeEEeecCC
Q 019173 188 LWTRDIENEIVPLCRELGIGIVPYSPL 214 (345)
Q Consensus 188 l~~~~~~~~~l~~~~~~gi~v~a~~pl 214 (345)
.-. ..++++.++++|..++++..-
T Consensus 102 ~~~---~~~~~~l~a~~~~~vV~m~~~ 125 (210)
T PF00809_consen 102 FED---DPEMLPLAAEYGAPVVLMHSD 125 (210)
T ss_dssp TSS---STTHHHHHHHHTSEEEEESES
T ss_pred ccc---cchhhhhhhcCCCEEEEEecc
Confidence 211 368999999999999986555
No 124
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=33.53 E-value=2.1e+02 Score=24.64 Aligned_cols=99 Identities=16% Similarity=0.199 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhhcCCCc--ccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcH--HHHHHHhcCCCeeEEec
Q 019173 109 EYVRSCCEASLKRLDVEY--IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASP--DTIRRAHAVHPITAVQL 184 (345)
Q Consensus 109 ~~i~~~v~~sL~~Lg~d~--iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~--~~l~~~~~~~~~~~~q~ 184 (345)
..+...+.+.+++.+... +-+-+- ..............+..|++.|- .+.+.++.. ..+..+. ..+++++-+
T Consensus 99 ~~~~~~l~~~l~~~~~~~~~lvlei~-e~~~~~~~~~~~~~i~~l~~~G~--~ialddfg~~~~~~~~l~-~l~~d~iKl 174 (241)
T smart00052 99 PDLVPRVLELLEETGLPPQRLELEIT-ESVLLDDDESAVATLQRLRELGV--RIALDDFGTGYSSLSYLK-RLPVDLLKI 174 (241)
T ss_pred chHHHHHHHHHHHcCCCHHHEEEEEe-ChhhhcChHHHHHHHHHHHHCCC--EEEEeCCCCcHHHHHHHH-hCCCCeEEE
Confidence 345566777777776543 222221 11112234455688999999997 566766643 2333333 345777766
Q ss_pred cccccccc--------cccchhhHHHhhCCeEEee
Q 019173 185 EWSLWTRD--------IENEIVPLCRELGIGIVPY 211 (345)
Q Consensus 185 ~~nl~~~~--------~~~~~l~~~~~~gi~v~a~ 211 (345)
..+++..- .-..+...|+..|+.+++-
T Consensus 175 d~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 209 (241)
T smart00052 175 DKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAE 209 (241)
T ss_pred CHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEe
Confidence 65554321 1157789999999999973
No 125
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=33.17 E-value=3.5e+02 Score=24.00 Aligned_cols=66 Identities=20% Similarity=0.236 Sum_probs=40.8
Q ss_pred HHHHHHHHHcCC---------ChHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcCCCCCHHHHHHHHhhCC--CCcc
Q 019173 253 FRIENLAKKYKC---------TSAQLALAWVLEQGDDVVPIPGTTKIKNLEDNIVSLTVKLTNKDLKEISDAVP--TEEV 321 (345)
Q Consensus 253 ~~l~~ia~~~g~---------s~~~~al~~~l~~~~v~~vivg~~~~~~l~~nl~a~~~~L~~~~~~~i~~~~~--~~~~ 321 (345)
..+..+|++.|+ +..+++-.++ ..++ .++|++++. ..|.. ..++..++++.+++|.++.+ ++.+
T Consensus 101 ~~~e~v~~~lgl~~~~PLW~~~~~~ll~e~i-~~G~-~aiIv~v~a-~gL~~--~~LGr~i~~e~i~~L~~~~~~~gvd~ 175 (223)
T TIGR00290 101 TRIERVCRELGLKSFAPLWHRDPEKLMEEFV-EEKF-EARIIAVAA-EGLDE--SWLGRRIDRKMIDELKKLNEKYGIHP 175 (223)
T ss_pred HHHHHHHHhcCCEEeccccCCCHHHHHHHHH-HcCC-eEEEEEEec-CCCCh--HHcCCcccHHHHHHHHHHHhccCCCc
Confidence 367777887765 4455555554 6665 355555543 34553 45677899999998888654 3344
Q ss_pred CC
Q 019173 322 AG 323 (345)
Q Consensus 322 ~~ 323 (345)
+|
T Consensus 176 ~G 177 (223)
T TIGR00290 176 AG 177 (223)
T ss_pred cC
Confidence 44
No 126
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=32.97 E-value=1.2e+02 Score=28.92 Aligned_cols=88 Identities=10% Similarity=0.211 Sum_probs=53.7
Q ss_pred EEEeccCCCC-----------CCHHHHHHHHHHHHH-cCC---cceEecCC--CcHHH---HHHHhcCCCeeEEeccccc
Q 019173 129 LYYQHRVDTS-----------VPIEETIGEMKKLVE-EGK---IKYIGLSE--ASPDT---IRRAHAVHPITAVQLEWSL 188 (345)
Q Consensus 129 l~~lH~~~~~-----------~~~~~~~~~L~~L~~-~G~---ir~iGvS~--~~~~~---l~~~~~~~~~~~~q~~~nl 188 (345)
.+-||.+++. .+++++++++.++.+ .|+ |+++=+.+ .+.+. +.+++...++.++.++||.
T Consensus 218 aiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~~VtieyvLI~GvNDs~e~a~~La~llk~l~~~VnLIPynp 297 (355)
T TIGR00048 218 AISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGRRVTFEYVLLDGVNDQVEHAEELAELLKGTKCKVNLIPWNP 297 (355)
T ss_pred EEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEECCCCCCHHHHHHHHHHHhcCCCceEEEeccc
Confidence 3668998742 236788888876654 442 33443332 33344 4444544567788889997
Q ss_pred cccc----cc----cchhhHHHhhCCeEEeecCCCc
Q 019173 189 WTRD----IE----NEIVPLCRELGIGIVPYSPLGR 216 (345)
Q Consensus 189 ~~~~----~~----~~~l~~~~~~gi~v~a~~pl~~ 216 (345)
.... +. ....++.+++|+.+......+.
T Consensus 298 ~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~~~G~ 333 (355)
T TIGR00048 298 FPEADYERPSNEQIDRFAKTLMSYGFTVTIRKSRGD 333 (355)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeCCCCc
Confidence 6531 11 2445566778999999887764
No 127
>PRK09061 D-glutamate deacylase; Validated
Probab=32.95 E-value=3.9e+02 Score=26.84 Aligned_cols=113 Identities=11% Similarity=0.104 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeccccccCCccccccCCCHHHHHHHHHHHHhhc
Q 019173 43 DGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEASLKRL 122 (345)
Q Consensus 43 ~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~L 122 (345)
+..++++.|++.|...|=+...|-.+.+...+-+.++...+.+..|...+.... ..++.....++++.++.-
T Consensus 170 ~m~~ll~~al~~Ga~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~--------~~~~~~e~~av~~~i~lA 241 (509)
T PRK09061 170 EILELLEQGLDEGALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLS--------NVDPRSSVDAYQELIAAA 241 (509)
T ss_pred HHHHHHHHHHHCCCCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCcc--------cCCchhHHHHHHHHHHHH
Confidence 367788889999999998766675555666677666654455666666654211 011122233444444332
Q ss_pred CCCcccEEEeccCCC-CCCHHHHHHHHHHHHHcCCcceEecC
Q 019173 123 DVEYIDLYYQHRVDT-SVPIEETIGEMKKLVEEGKIKYIGLS 163 (345)
Q Consensus 123 g~d~iDl~~lH~~~~-~~~~~~~~~~L~~L~~~G~ir~iGvS 163 (345)
...-.-+...|-... .....+.++.+++++++|.-=..-++
T Consensus 242 ~~~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~ 283 (509)
T PRK09061 242 AETGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAY 283 (509)
T ss_pred HHhCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEec
Confidence 221233566665432 23467788999999999854433443
No 128
>PF01244 Peptidase_M19: Membrane dipeptidase (Peptidase family M19); InterPro: IPR008257 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of peptidases belong to the MEROPS peptidase family M19 (membrane dipeptidase family, clan MJ). The protein fold of the peptidase domain for members of this family resembles that of Klebsiella urease, the type example for clan MJ. Renal dipeptidase (rDP) (3.4.13.19 from EC), also known as microsomal dipeptidase, is a zinc-dependent metalloenzyme that hydrolyzes a wide range of dipeptides. It is involved in renal metabolism of glutathione and its conjugates. It is a homodimeric disulphide-linked glycoprotein attached to the renal brush border microvilli membrane by a GPI-anchor. A glutamate residue has recently been shown [,] to be important for the catalytic activity of rDP. rDP seems to be evolutionary related to hypothetical proteins in the PQQ biosynthesis operons of Acinetobacter calcoaceticus and Klebsiella pneumoniae.; GO: 0008235 metalloexopeptidase activity, 0008239 dipeptidyl-peptidase activity, 0016805 dipeptidase activity, 0006508 proteolysis; PDB: 3NEH_B 2RAG_D 3LU2_A 3B40_A 3LY0_A 3FDG_B 2I5G_B 3S2J_A 3S2N_A 3S2L_A ....
Probab=32.83 E-value=60 Score=30.51 Aligned_cols=107 Identities=11% Similarity=0.170 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeccccccCCccccccCCCHHHHHHHHHHHHhh
Q 019173 42 EDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEASLKR 121 (345)
Q Consensus 42 ~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~ 121 (345)
+--+++|+..-+.|+ .+|.|.. ||+.+=++++- .+..+|+|......-.. .++..++...+.+.+
T Consensus 160 ~~G~~vV~~mn~lGm-~vDvSH~-----s~~t~~Dv~~~--s~~PviaSHSn~ral~~---h~RNltDe~iraia~---- 224 (320)
T PF01244_consen 160 PFGREVVREMNRLGM-LVDVSHL-----SEKTFWDVLEI--SKKPVIASHSNARALCP---HPRNLTDEQIRAIAE---- 224 (320)
T ss_dssp HHHHHHHHHHHHHT--EEE-TTB------HHHHHHHHHH---SSEEEECCEEBTTTS-----TTSB-HHHHHHHHH----
T ss_pred hHHHHHHHHHHHcCC-eeeeccC-----CHHHHHHHHhh--cCCCEEEeccChHhhCC---CCCCCCHHHHHHHHH----
Confidence 457899999999998 9999963 89999999975 34688999877543211 123333433333333
Q ss_pred cCCCcccEEEeccC-----CCCCCHHHHHHHHHHHHHcCCcceEecCC
Q 019173 122 LDVEYIDLYYQHRV-----DTSVPIEETIGEMKKLVEEGKIKYIGLSE 164 (345)
Q Consensus 122 Lg~d~iDl~~lH~~-----~~~~~~~~~~~~L~~L~~~G~ir~iGvS~ 164 (345)
-| ..|=+.+.... +....++++++.++.+++-+=+.+||+..
T Consensus 225 ~G-GviGi~~~~~fl~~~~~~~~~~~~~~~Hi~y~~~l~G~dhVgiGs 271 (320)
T PF01244_consen 225 RG-GVIGINFYPAFLGDDWDPRASLDDLVDHIDYIVDLVGIDHVGIGS 271 (320)
T ss_dssp TT--EEEEESSHHHHSTTHSSG-BHHHHHHHHHHHHHHH-GGGEEEE-
T ss_pred CC-cEEEEEcchhhhcccccccccHHHHHHHHHHHHHhcCCCeEEECc
Confidence 23 23444333321 13356889999999999988899999975
No 129
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=32.72 E-value=2.9e+02 Score=26.88 Aligned_cols=143 Identities=13% Similarity=0.133 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHHcCCCee-ecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeccccccC--CccccccCCCHHHHHHHHH
Q 019173 40 SEEDGISIIKHAFNKGITFF-DTADKYGPYTNEILLGKALKMLPRENIQVATKFGFAEL--GLDAVIVKGNPEYVRSCCE 116 (345)
Q Consensus 40 ~~~~a~~~l~~A~~~Gi~~~-DTA~~Yg~g~sE~~lG~~l~~~~R~~~~i~tK~~~~~~--~~~~~~~~~~~~~i~~~v~ 116 (345)
+.++=.+=++.|++.|-..| |-+. .| .-..+-+.+-+ ...+-|-|- ..... .......+.+.+.+.+.++
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLSt-Gg---dl~~iR~~il~--~s~vpvGTV-PiYqa~~~~~~~~~~mt~d~~~~~ie 147 (423)
T TIGR00190 75 DIEEEVEKALIAIKYGADTVMDLST-GG---DLDEIRKAILD--AVPVPVGTV-PIYQAAEKVHGAVEDMDEDDMFRAIE 147 (423)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeccC-CC---CHHHHHHHHHH--cCCCCccCc-cHHHHHHHhcCChhhCCHHHHHHHHH
Confidence 44554555899999998644 4443 34 34445444422 111222211 11000 0001124678888888888
Q ss_pred HHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcCCCeeEEeccccccccccccc
Q 019173 117 ASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWTRDIENE 196 (345)
Q Consensus 117 ~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~nl~~~~~~~~ 196 (345)
+..+ +=+|++-+|.-- +.+.++.++++|+ ..|+-+-....+...+.... +=|++..+. ..
T Consensus 148 ~qa~----dGVDfmTiH~Gi-------~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~~~------~ENPlye~f-D~ 207 (423)
T TIGR00190 148 KQAK----DGVDFMTIHAGV-------LLEYVERLKRSGR--ITGIVSRGGAILAAWMLHHH------KENPLYKNF-DY 207 (423)
T ss_pred HHHH----hCCCEEEEccch-------hHHHHHHHHhCCC--ccCeecCcHHHHHHHHHHcC------CcCchHHHH-HH
Confidence 8776 458888999842 3578888999985 56776666666655544332 345555543 58
Q ss_pred hhhHHHhhCCeEE
Q 019173 197 IVPLCRELGIGIV 209 (345)
Q Consensus 197 ~l~~~~~~gi~v~ 209 (345)
+++.|+++++.+-
T Consensus 208 lLeI~~~yDVtlS 220 (423)
T TIGR00190 208 ILEIAKEYDVTLS 220 (423)
T ss_pred HHHHHHHhCeeee
Confidence 9999999998775
No 130
>TIGR00035 asp_race aspartate racemase.
Probab=32.71 E-value=1.8e+02 Score=25.56 Aligned_cols=69 Identities=16% Similarity=0.107 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCC------------CHHHHHHHHHHHHHcCCcceEecCCCcHHH-HHH
Q 019173 106 GNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSV------------PIEETIGEMKKLVEEGKIKYIGLSEASPDT-IRR 172 (345)
Q Consensus 106 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~------------~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~-l~~ 172 (345)
-+.+.+++=++..-.+.+.++++.+.+++|+... ....+.+.++.|.+.| +..|-+...+... +.+
T Consensus 14 at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~~~~~ 92 (229)
T TIGR00035 14 ATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHKFAED 92 (229)
T ss_pred HHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHHHHHH
Confidence 3456677777777778999999999999985421 1234677777777765 7889887765544 444
Q ss_pred Hhc
Q 019173 173 AHA 175 (345)
Q Consensus 173 ~~~ 175 (345)
+.+
T Consensus 93 l~~ 95 (229)
T TIGR00035 93 IQK 95 (229)
T ss_pred HHH
Confidence 433
No 131
>PRK05660 HemN family oxidoreductase; Provisional
Probab=32.03 E-value=3.2e+02 Score=26.22 Aligned_cols=61 Identities=11% Similarity=0.051 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEec-cCCCC-------C-CHHH---HHH-HHHHHHHcCCcceEecCCCcH
Q 019173 105 KGNPEYVRSCCEASLKRLDVEYIDLYYQH-RVDTS-------V-PIEE---TIG-EMKKLVEEGKIKYIGLSEASP 167 (345)
Q Consensus 105 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH-~~~~~-------~-~~~~---~~~-~L~~L~~~G~ir~iGvS~~~~ 167 (345)
..+.+.+.+.++..++ ++.++|.+|.+- .|... . +.++ .++ +.+.|.+.|- ..+++|||..
T Consensus 170 gqt~~~~~~~l~~~~~-l~p~~is~y~l~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy-~~yei~~fa~ 243 (378)
T PRK05660 170 DQSLEEALDDLRQAIA-LNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALWDIFEQGHQLLTAAGY-QQYETSAYAK 243 (378)
T ss_pred CCCHHHHHHHHHHHHh-cCCCeEEeeccEeccCCcccccCCCCcCHHHHHHHHHHHHHHHHHcCC-cEeecccccC
Confidence 3567778887777655 888888888774 22210 0 1122 222 3455666776 4578888853
No 132
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=31.78 E-value=3.7e+02 Score=23.83 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHcCCCeeecC
Q 019173 40 SEEDGISIIKHAFNKGITFFDTA 62 (345)
Q Consensus 40 ~~~~a~~~l~~A~~~Gi~~~DTA 62 (345)
+.++..++++...+.|+..|+..
T Consensus 17 s~e~~~~i~~~L~~~GV~~IEvg 39 (265)
T cd03174 17 STEDKLEIAEALDEAGVDSIEVG 39 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEec
Confidence 78999999999999999999976
No 133
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=31.57 E-value=1e+02 Score=27.72 Aligned_cols=98 Identities=17% Similarity=0.157 Sum_probs=50.2
Q ss_pred HHHHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHc-CCcceEecC-------CCcHHHHHHHhcCCCeeEEe
Q 019173 112 RSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEE-GKIKYIGLS-------EASPDTIRRAHAVHPITAVQ 183 (345)
Q Consensus 112 ~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~-G~ir~iGvS-------~~~~~~l~~~~~~~~~~~~q 183 (345)
-+.+++.|+-.| +|||++-+-|-.......++++..-++.++ |.--+.|=. ....++..+.+....|+++.
T Consensus 24 ~~~~~dlLe~ag-~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IE 102 (244)
T PF02679_consen 24 LRYLEDLLESAG-DYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIE 102 (244)
T ss_dssp HHHHHHHHHHHG-GG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEE
T ss_pred HHHHHHHHHHhh-hhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEE
Confidence 467888999999 999999999876554334444443333333 222222211 11112233333345677776
Q ss_pred ccccccccccc--cchhhHHHhhCCeEEe
Q 019173 184 LEWSLWTRDIE--NEIVPLCRELGIGIVP 210 (345)
Q Consensus 184 ~~~nl~~~~~~--~~~l~~~~~~gi~v~a 210 (345)
+.=..+....+ ..++..++++|..|++
T Consensus 103 iSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 103 ISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp E--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred ecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 64444333222 5778888888877775
No 134
>PLN00191 enolase
Probab=31.32 E-value=3.5e+02 Score=26.89 Aligned_cols=96 Identities=11% Similarity=0.099 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecC--CCcHHHHHHHhcCCCeeEEe
Q 019173 106 GNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLS--EASPDTIRRAHAVHPITAVQ 183 (345)
Q Consensus 106 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS--~~~~~~l~~~~~~~~~~~~q 183 (345)
.+++...+-+.+.++++ ++.+|-.|-...+ |+.+.+|.+..++.-+|=- ..++..+.++++....++++
T Consensus 295 ~s~~e~i~~~~~L~~~y-----~I~~IEDPl~~~D----~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~ 365 (457)
T PLN00191 295 KSGDELIDLYKEFVSDY-----PIVSIEDPFDQDD----WEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALL 365 (457)
T ss_pred cCHHHHHHHHHHHhhcC-----CcEEEECCCCccc----HHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEE
Confidence 35665555555554433 5677777755433 5667777788777766522 25688898999888888888
Q ss_pred cccccccc-ccccchhhHHHhhCCeEEe
Q 019173 184 LEWSLWTR-DIENEIVPLCRELGIGIVP 210 (345)
Q Consensus 184 ~~~nl~~~-~~~~~~l~~~~~~gi~v~a 210 (345)
+..|-.-. ..-.++...|+.+|+.++.
T Consensus 366 iKl~qiGGITea~~~a~lA~~~G~~~~i 393 (457)
T PLN00191 366 LKVNQIGTVTESIEAVKMSKAAGWGVMT 393 (457)
T ss_pred ecccccCCHHHHHHHHHHHHHCCCEEEe
Confidence 87774332 1126899999999999976
No 135
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=31.15 E-value=5.5e+02 Score=25.65 Aligned_cols=105 Identities=10% Similarity=0.085 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC-CcceEecCC----C--cHHHHHHHhcCCC
Q 019173 106 GNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG-KIKYIGLSE----A--SPDTIRRAHAVHP 178 (345)
Q Consensus 106 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G-~ir~iGvS~----~--~~~~l~~~~~~~~ 178 (345)
.+++.|.+.++...++.|+.+ +.+...+...+...+.+.++++++.| .--.++++. . +.+.++.+ ....
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~---~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l-~~aG 297 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGF---FILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLY-RRAG 297 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCE---EEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHH-HHhC
Confidence 578999999999888888654 34444333344556677778888887 323344432 1 33434333 3333
Q ss_pred eeEEecccc--------ccccc----cccchhhHHHhhCCeEEeecCC
Q 019173 179 ITAVQLEWS--------LWTRD----IENEIVPLCRELGIGIVPYSPL 214 (345)
Q Consensus 179 ~~~~q~~~n--------l~~~~----~~~~~l~~~~~~gi~v~a~~pl 214 (345)
+..+++-.- .+... ...+.+..|+++||.+.+.--+
T Consensus 298 ~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~ 345 (497)
T TIGR02026 298 LVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFIT 345 (497)
T ss_pred CcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEE
Confidence 333322111 11111 1157888999999987653333
No 136
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=31.02 E-value=4.1e+02 Score=24.16 Aligned_cols=78 Identities=15% Similarity=0.115 Sum_probs=51.5
Q ss_pred CHH-HHHHHHHHHHHcCCCeeecCCCCCC-CcHH---HHHHHHHhcC-CCCCeEEEeccccccCCccccccCCCHHHHHH
Q 019173 40 SEE-DGISIIKHAFNKGITFFDTADKYGP-YTNE---ILLGKALKML-PRENIQVATKFGFAELGLDAVIVKGNPEYVRS 113 (345)
Q Consensus 40 ~~~-~a~~~l~~A~~~Gi~~~DTA~~Yg~-g~sE---~~lG~~l~~~-~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~ 113 (345)
+.+ +..++.+.|.++|..|+=|+..|+. |-+. +++-+.+++. ...+ +.-|.. .| -.+.+....
T Consensus 144 ~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~~~~--vgIKAs----GG-----Irt~~~A~~ 212 (257)
T PRK05283 144 KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVAKT--VGFKPA----GG-----VRTAEDAAQ 212 (257)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcccCCC--eeEEcc----CC-----CCCHHHHHH
Confidence 445 5889999999999999999999974 4333 3444444321 0111 333432 11 235788888
Q ss_pred HHHHHHhhcCCCccc
Q 019173 114 CCEASLKRLDVEYID 128 (345)
Q Consensus 114 ~v~~sL~~Lg~d~iD 128 (345)
-++.--+.||.+|++
T Consensus 213 ~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 213 YLALADEILGADWAD 227 (257)
T ss_pred HHHHHHHHhChhhcC
Confidence 888889999988876
No 137
>PRK00077 eno enolase; Provisional
Probab=30.82 E-value=4.1e+02 Score=26.04 Aligned_cols=96 Identities=9% Similarity=0.050 Sum_probs=64.4
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC--CcceEecCC--CcHHHHHHHhcCCCeeE
Q 019173 106 GNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGLSE--ASPDTIRRAHAVHPITA 181 (345)
Q Consensus 106 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G--~ir~iGvS~--~~~~~l~~~~~~~~~~~ 181 (345)
++++...+.+.+.++++ ++.+|-.|-+..+ |+.+.+|.++- ++.-+|=-. .+...+..+++....++
T Consensus 261 ~s~~e~~~~~~~l~e~y-----~i~~iEdPl~~~D----~~g~~~L~~~~~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~ 331 (425)
T PRK00077 261 LTSEEMIDYLAELVDKY-----PIVSIEDGLDEND----WEGWKLLTEKLGDKVQLVGDDLFVTNTKRLKKGIEKGAANS 331 (425)
T ss_pred CCHHHHHHHHHHHHhhC-----CcEEEEcCCCCcc----HHHHHHHHHhcCCCCeEEcCCCccCCHHHHHHHHHhCCCCE
Confidence 56677777667776664 5777777765443 45555566653 455433332 36889999988888899
Q ss_pred Eecccccccc-ccccchhhHHHhhCCeEEe
Q 019173 182 VQLEWSLWTR-DIENEIVPLCRELGIGIVP 210 (345)
Q Consensus 182 ~q~~~nl~~~-~~~~~~l~~~~~~gi~v~a 210 (345)
+|+..+-.-. ..-.++...|+.+|+.++.
T Consensus 332 v~ik~~~~GGitea~~ia~lA~~~gi~~~v 361 (425)
T PRK00077 332 ILIKVNQIGTLTETLDAIELAKRAGYTAVV 361 (425)
T ss_pred EEeCccccCCHHHHHHHHHHHHHcCCeEEE
Confidence 9987775432 1126889999999998664
No 138
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=30.72 E-value=4.4e+02 Score=24.44 Aligned_cols=168 Identities=13% Similarity=0.059 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHHHHcCCCeeecCCCCCC---CcHHH----HHHHHHhc-----------CCCCCeEEEeccccccC--Cc
Q 019173 40 SEEDGISIIKHAFNKGITFFDTADKYGP---YTNEI----LLGKALKM-----------LPRENIQVATKFGFAEL--GL 99 (345)
Q Consensus 40 ~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~---g~sE~----~lG~~l~~-----------~~R~~~~i~tK~~~~~~--~~ 99 (345)
.++..+++-..++++|-+.++|+. |.- |-+|+ .+.+..+. ...+...|+--+|+... .+
T Consensus 41 ~peiv~~vh~df~~aGa~ii~T~T-Yqa~~~~~~e~~~~~~~~~l~~~sv~la~~ard~~g~~~~~iagsiGP~ga~~a~ 119 (300)
T COG2040 41 EPEIVRNVHADFLRAGADIITTAT-YQATPEGFAERVSEDEAKQLIRRSVELARAARDAYGEENQNIAGSLGPYGAALAD 119 (300)
T ss_pred CHHHHHHHHHHHHHhcCcEEeehh-hhcCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccccccceeccchhhhcCh
Confidence 466778888899999999999874 542 22332 22222221 24445556666676532 11
Q ss_pred c-ccccCCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCc---------HHH
Q 019173 100 D-AVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS---------PDT 169 (345)
Q Consensus 100 ~-~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~---------~~~ 169 (345)
+ ...+..+.+.+.+-.+.-++.|.-.-+|++.+--.......+.+++.+++. ++=-.|+++-.+ ...
T Consensus 120 Ey~g~Y~~~~d~~~~fh~~rie~l~~ag~Dlla~ETip~i~Ea~Aiv~l~~~~---s~p~wISfT~~d~~~lr~Gt~l~e 196 (300)
T COG2040 120 EYRGDYGASQDALYKFHRPRIEALNEAGADLLACETLPNITEAEAIVQLVQEF---SKPAWISFTLNDDTRLRDGTPLSE 196 (300)
T ss_pred hhcCccCccHHHHHHHHHHHHHHHHhCCCcEEeecccCChHHHHHHHHHHHHh---CCceEEEEEeCCCCccCCCccHHH
Confidence 1 112455677777777777777777779999987665444445566666666 787788887542 223
Q ss_pred HHHHhcC-CCeeEEeccccccccccccchhhHH--HhhCCeEEeecC
Q 019173 170 IRRAHAV-HPITAVQLEWSLWTRDIENEIVPLC--RELGIGIVPYSP 213 (345)
Q Consensus 170 l~~~~~~-~~~~~~q~~~nl~~~~~~~~~l~~~--~~~gi~v~a~~p 213 (345)
+..++.. .++..+.+.|.-.++- ..+++.. +..|+++++|--
T Consensus 197 aa~~~~~~~~iaa~gvNC~~p~~~--~a~i~~l~~~~~~~piivYPN 241 (300)
T COG2040 197 AAAILAGLPNIAALGVNCCHPDHI--PAAIEELSKLLTGKPIIVYPN 241 (300)
T ss_pred HHHHHhcCcchhheeeccCChhhh--HHHHHHHHhcCCCCceEEcCC
Confidence 3333333 3577777777665553 4677777 345788888755
No 139
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=30.51 E-value=3e+02 Score=25.48 Aligned_cols=73 Identities=12% Similarity=0.016 Sum_probs=47.5
Q ss_pred HHHHHHHHcCCcc-eEecCCCcHHHHHHHhcCCCeeEEecccccccc-ccccchhhHHHhhCCeEEeecCCCccc
Q 019173 146 GEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWTR-DIENEIVPLCRELGIGIVPYSPLGRGF 218 (345)
Q Consensus 146 ~~L~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~nl~~~-~~~~~~l~~~~~~gi~v~a~~pl~~G~ 218 (345)
+.+..|.++-.+. +.|=|.++...+..++.....+++|+.....-. ..-.++...|+.+||.++..+.+.+|+
T Consensus 196 ~~~~~l~~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~es~i 270 (307)
T TIGR01927 196 DEMSAFSEATGTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPAKLRDLAQKAHRLGLQAVFSSVFESSI 270 (307)
T ss_pred HHHHHHHHhCCCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHHHHHHHHHHHHHcCCCEEEECccchHH
Confidence 4444555543222 233345667777777777777888887664321 112689999999999999887776654
No 140
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=30.50 E-value=2.1e+02 Score=28.28 Aligned_cols=29 Identities=21% Similarity=0.222 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEecc
Q 019173 105 KGNPEYVRSCCEASLKRLDVEYIDLYYQHR 134 (345)
Q Consensus 105 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~ 134 (345)
.-+.+.+++.++..++ ++.++|++|.+.-
T Consensus 226 gqT~e~~~~~l~~~~~-l~~~~is~y~L~~ 254 (449)
T PRK09058 226 GQTPEIWQQDLAIVRD-LGLDGVDLYALNL 254 (449)
T ss_pred CCCHHHHHHHHHHHHh-cCCCEEEEecccc
Confidence 4477888888777664 8999999998754
No 141
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=30.40 E-value=4.7e+02 Score=24.68 Aligned_cols=60 Identities=17% Similarity=0.094 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEecc-CCCC--------CCHHHHH-HHHHHHHHcCCcceEecCCCc
Q 019173 105 KGNPEYVRSCCEASLKRLDVEYIDLYYQHR-VDTS--------VPIEETI-GEMKKLVEEGKIKYIGLSEAS 166 (345)
Q Consensus 105 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~-~~~~--------~~~~~~~-~~L~~L~~~G~ir~iGvS~~~ 166 (345)
..+.+.+++.++..+ +++.+++.++.+.- |... .+.++.+ .+.+.|.+.|- ..+++|||.
T Consensus 161 gqt~~~~~~~l~~~~-~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~yeis~fa 230 (350)
T PRK08446 161 LDNKKLLKEELKLAK-ELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGF-KQYEISNFG 230 (350)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCC-cEEEeehhh
Confidence 346777777776644 58888888877643 2111 0112333 34566667785 568998875
No 142
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=30.24 E-value=1e+02 Score=21.24 Aligned_cols=17 Identities=12% Similarity=0.440 Sum_probs=15.0
Q ss_pred HHHHHHHHcCCChHHHH
Q 019173 254 RIENLAKKYKCTSAQLA 270 (345)
Q Consensus 254 ~l~~ia~~~g~s~~~~a 270 (345)
.+.+||+++|++..++-
T Consensus 24 ~lkdIA~~Lgvs~~tIr 40 (60)
T PF10668_consen 24 KLKDIAEKLGVSESTIR 40 (60)
T ss_pred cHHHHHHHHCCCHHHHH
Confidence 68899999999998865
No 143
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=30.10 E-value=3.8e+02 Score=23.51 Aligned_cols=22 Identities=18% Similarity=0.551 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHHcCCCeeec
Q 019173 40 SEEDGISIIKHAFNKGITFFDT 61 (345)
Q Consensus 40 ~~~~a~~~l~~A~~~Gi~~~DT 61 (345)
-+|.....++.|++.|+..|++
T Consensus 13 ~pENTl~Af~~A~~~G~d~iE~ 34 (237)
T cd08583 13 TYTNSLDAFEHNYKKGYRVFEV 34 (237)
T ss_pred CCccHHHHHHHHHHhCCCEEEE
Confidence 3578899999999999998874
No 144
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=29.96 E-value=5.5e+02 Score=25.35 Aligned_cols=110 Identities=13% Similarity=0.138 Sum_probs=60.0
Q ss_pred CCCCCCCcHHHHHHHHHhc----CC-CCCeEEEeccccccCCccccccCCCHHHHHHHHHHHHhhcCCC----cccEEEe
Q 019173 62 ADKYGPYTNEILLGKALKM----LP-RENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEASLKRLDVE----YIDLYYQ 132 (345)
Q Consensus 62 A~~Yg~g~sE~~lG~~l~~----~~-R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d----~iDl~~l 132 (345)
.-.|| .|+-|-+++++ .+ .+=++|.|-+...-- =++|..-+++.-++++-+ .+.++.+
T Consensus 65 d~VfG---G~~~L~~~I~~~~~~~~~p~~I~V~tTC~~eiI----------GDDi~~vv~~~~~~~~~e~~~~~~~vi~v 131 (454)
T cd01973 65 SAVFG---GAKRVEEGVLVLARRYPDLRVIPIITTCSTEII----------GDDIEGVIRKLNEALKEEFPDREVHLIPV 131 (454)
T ss_pred ceEEC---cHHHHHHHHHHHHHhcCCCCEEEEECCchHhhh----------ccCHHHHHHHHHhhhhhccCCCCCeEEEe
Confidence 34677 57777777766 32 344678888754321 122333333332222111 4789999
Q ss_pred ccCCCCCCH----HHHHHHHHH-HHH----cCCcceEecCC--CcHHHHHHHhcCCCeeEEec
Q 019173 133 HRVDTSVPI----EETIGEMKK-LVE----EGKIKYIGLSE--ASPDTIRRAHAVHPITAVQL 184 (345)
Q Consensus 133 H~~~~~~~~----~~~~~~L~~-L~~----~G~ir~iGvS~--~~~~~l~~~~~~~~~~~~q~ 184 (345)
|.|+..... +.+++++-+ +.. +++|--||-.+ .+.+.+.++++...+.++.+
T Consensus 132 ~tpgF~Gs~~~G~~~a~~ali~~~~~~~~~~~~VNii~~~~~~~D~~ei~~lL~~~Gl~v~~~ 194 (454)
T cd01973 132 HTPSFKGSMVTGYDEAVRSVVKTIAKKGAPSGKLNVFTGWVNPGDVVELKHYLSEMDVEANIL 194 (454)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHhcccCCCCCcEEEECCCCChHHHHHHHHHHHHcCCCEEEe
Confidence 998876433 223333322 222 46687776433 24467777877766666644
No 145
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=29.89 E-value=49 Score=29.68 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=21.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCC
Q 019173 34 GYNSPVSEEDGISIIKHAFNKGI 56 (345)
Q Consensus 34 ~~~~~~~~~~a~~~l~~A~~~Gi 56 (345)
.|..+++++++.+++..|+++||
T Consensus 178 r~k~dlt~eea~~Lv~eAi~AGi 200 (271)
T KOG0173|consen 178 RWKPDLTKEEAIKLVCEAIAAGI 200 (271)
T ss_pred hcCcccCHHHHHHHHHHHHHhhh
Confidence 58778899999999999999998
No 146
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=29.70 E-value=4.7e+02 Score=24.43 Aligned_cols=109 Identities=17% Similarity=0.087 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHhhcCCCcccEEEeccCCCCC-CHHHHHHHHHHHHHcCCcceEecCC---------CcHHHHHHHhcC
Q 019173 107 NPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSV-PIEETIGEMKKLVEEGKIKYIGLSE---------ASPDTIRRAHAV 176 (345)
Q Consensus 107 ~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~-~~~~~~~~L~~L~~~G~ir~iGvS~---------~~~~~l~~~~~~ 176 (345)
+.+.+.+.++..-+..+ +.-+.|-.-|+.. +...+.+.++.+++-|.|+.+.+.+ .+.+.++.+.+.
T Consensus 120 ~~~e~~~~i~~i~~~~~---I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~ 196 (321)
T TIGR03822 120 SPAELDAAFAYIADHPE---IWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTS 196 (321)
T ss_pred CHHHHHHHHHHHHhCCC---ccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHc
Confidence 34555555544333333 3334454444443 2356777788888888776555533 233444444443
Q ss_pred CCeeEEeccccccc--cccccchhhHHHhhCCeEEeecCCCccc
Q 019173 177 HPITAVQLEWSLWT--RDIENEIVPLCRELGIGIVPYSPLGRGF 218 (345)
Q Consensus 177 ~~~~~~q~~~nl~~--~~~~~~~l~~~~~~gi~v~a~~pl~~G~ 218 (345)
.....+.+..|-.. .....+.++.+++.||.+....++..|.
T Consensus 197 g~~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv 240 (321)
T TIGR03822 197 GKTVYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV 240 (321)
T ss_pred CCcEEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC
Confidence 32223333443111 1111577888889999999989988764
No 147
>TIGR00289 conserved hypothetical protein TIGR00289. Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.
Probab=29.70 E-value=4e+02 Score=23.60 Aligned_cols=91 Identities=12% Similarity=0.133 Sum_probs=56.2
Q ss_pred cchhhHHHhhCCeEEeecCCCccccCCCCCCCCCCCCCccccCCCCCccchhhhHHHHHHHHHHHHHcCC---------C
Q 019173 195 NEIVPLCRELGIGIVPYSPLGRGFFGGKAVVESVPPDSFLNFLPRFTGENLDRNRSIYFRIENLAKKYKC---------T 265 (345)
Q Consensus 195 ~~~l~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~---------s 265 (345)
.++++..++.|+..++.+.+..- .....+..+|++.|+ +
T Consensus 75 ~~l~~~l~~~gv~~vv~GdI~s~--------------------------------~qr~~~e~vc~~~gl~~~~PLW~~d 122 (222)
T TIGR00289 75 EDLAGQLGELDVEALCIGAIESN--------------------------------YQKSRIDKVCRELGLKSIAPLWHAD 122 (222)
T ss_pred HHHHHHHHHcCCCEEEECccccH--------------------------------HHHHHHHHHHHHcCCEEeccccCCC
Confidence 56777777778777766555421 012367788888775 4
Q ss_pred hHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcCCCCCHHHHHHHHhhCC--CCccCC
Q 019173 266 SAQLALAWVLEQGDDVVPIPGTTKIKNLEDNIVSLTVKLTNKDLKEISDAVP--TEEVAG 323 (345)
Q Consensus 266 ~~~~al~~~l~~~~v~~vivg~~~~~~l~~nl~a~~~~L~~~~~~~i~~~~~--~~~~~~ 323 (345)
..++ +.++ ..++ .++|+++... .|.. ..++..|+++.+++|.++.+ ++.++|
T Consensus 123 ~~~l-~e~i-~~Gf-~aiIv~v~~~-gL~~--~~LGr~id~~~~~~L~~l~~~~gid~~G 176 (222)
T TIGR00289 123 PEKL-MYEV-AEKF-EVIIVSVSAM-GLDE--SWLGRRIDKECIDDLKRLNEKYGIHLAF 176 (222)
T ss_pred HHHH-HHHH-HcCC-eEEEEEEccC-CCCh--HHcCCccCHHHHHHHHHHHhhcCccccC
Confidence 5555 4654 6665 4556655543 4554 35677899999988887543 234444
No 148
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=29.63 E-value=4e+02 Score=25.17 Aligned_cols=104 Identities=21% Similarity=0.218 Sum_probs=57.0
Q ss_pred cCCCHHHHHHHHHHHHhhcCCCcccEEEeccC--------CCCCCHHHHHHHHHHHHHcCCcceEecCC---CcHHHHHH
Q 019173 104 VKGNPEYVRSCCEASLKRLDVEYIDLYYQHRV--------DTSVPIEETIGEMKKLVEEGKIKYIGLSE---ASPDTIRR 172 (345)
Q Consensus 104 ~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~--------~~~~~~~~~~~~L~~L~~~G~ir~iGvS~---~~~~~l~~ 172 (345)
+.++.+.+.+ +-+.|.+.|+++|.+-+.-.. ....+-.+.++.+.+.+ ...+...+.. .+.+.++.
T Consensus 20 ~~f~~~~~~~-i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~--~~~~~~~ll~pg~~~~~dl~~ 96 (337)
T PRK08195 20 HQYTLEQVRA-IARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVV--KQAKIAALLLPGIGTVDDLKM 96 (337)
T ss_pred CccCHHHHHH-HHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhC--CCCEEEEEeccCcccHHHHHH
Confidence 4566666554 556699999999998633111 01122233444443332 2344443322 24566766
Q ss_pred HhcCCCeeEEeccccccccccccchhhHHHhhCCeEEee
Q 019173 173 AHAVHPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPY 211 (345)
Q Consensus 173 ~~~~~~~~~~q~~~nl~~~~~~~~~l~~~~~~gi~v~a~ 211 (345)
+.+. .++.+.+-.+.-..+.-.+.+++++++|+.+...
T Consensus 97 a~~~-gvd~iri~~~~~e~~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 97 AYDA-GVRVVRVATHCTEADVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHc-CCCEEEEEEecchHHHHHHHHHHHHHCCCeEEEE
Confidence 6654 3455554443333222367889999999887764
No 149
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=29.61 E-value=1.2e+02 Score=30.36 Aligned_cols=125 Identities=19% Similarity=0.177 Sum_probs=68.1
Q ss_pred HHHHHHcCCCeee--cCCCCCC--------CcHHHHHHHHHhc----CCCCCeEEEeccccccCC--------cc-cccc
Q 019173 48 IKHAFNKGITFFD--TADKYGP--------YTNEILLGKALKM----LPRENIQVATKFGFAELG--------LD-AVIV 104 (345)
Q Consensus 48 l~~A~~~Gi~~~D--TA~~Yg~--------g~sE~~lG~~l~~----~~R~~~~i~tK~~~~~~~--------~~-~~~~ 104 (345)
++...+.|+..+- ||-.|.- |.-|.++- +-++ ..+.++|+++=+|-.... |. ....
T Consensus 108 f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~-aark~~g~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l~v 186 (546)
T PF01175_consen 108 FERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLN-AARKHFGGDLAGKLFLTAGLGGMGGAQPLAATMAGGVGLIV 186 (546)
T ss_dssp HHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHH-HHHHHSTTS-TT-EEEEE--STTCCHHHHHHHHTT-EEEEE
T ss_pred HHHHHhccchhhccccccceEEEcccceeehhhHHHHH-HHHHhcCCCCcceEEEEecccccccchHHHHHhcCceEEEE
Confidence 5556667777554 5544421 23333333 3232 467889999988754321 00 1112
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcCC---CeeE
Q 019173 105 KGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH---PITA 181 (345)
Q Consensus 105 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~---~~~~ 181 (345)
..+++.|+ +|+.+.|+|.+- .+++++++..++.+++|+...||+-..-.+.++++++.. .+..
T Consensus 187 Evd~~ri~-------kR~~~g~ld~~~-------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~t 252 (546)
T PF01175_consen 187 EVDPSRIE-------KRLEQGYLDEVT-------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDLVT 252 (546)
T ss_dssp ES-HHHHH-------HHHHTTSSSEEE-------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SEE-
T ss_pred EECHHHHH-------HHHhCCCeeEEc-------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCccc
Confidence 33455554 467778888653 468999999999999999999999988888888887762 3334
Q ss_pred Eecccc
Q 019173 182 VQLEWS 187 (345)
Q Consensus 182 ~q~~~n 187 (345)
-|..+|
T Consensus 253 DQTS~H 258 (546)
T PF01175_consen 253 DQTSAH 258 (546)
T ss_dssp --SSTT
T ss_pred CCCccc
Confidence 465443
No 150
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=29.33 E-value=6e+02 Score=25.57 Aligned_cols=133 Identities=12% Similarity=0.157 Sum_probs=68.3
Q ss_pred HHHHHHHHHhc----CCCCCeEEEeccccccCCccccccCCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCCC-HHHH
Q 019173 70 NEILLGKALKM----LPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVP-IEET 144 (345)
Q Consensus 70 sE~~lG~~l~~----~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~-~~~~ 144 (345)
+++.+-+.+++ .+.+=++|.|-|...-- .-+.+.+-+.++ .+++ ++++.+|.+..... +...
T Consensus 69 g~~kL~~~I~~~~~~~~P~~I~V~tTC~~eiI-------GDDi~~v~~~~~---~~~~---~pVi~v~t~~f~g~~~~g~ 135 (513)
T CHL00076 69 SQEKVVDNITRKDKEERPDLIVLTPTCTSSIL-------QEDLQNFVDRAS---IESD---SDVILADVNHYRVNELQAA 135 (513)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEECCCCchhhh-------hcCHHHHHHHhh---cccC---CCEEEeCCCCCcccHHHHH
Confidence 45555555554 34455667777654311 112233333322 2333 68999999966532 2222
Q ss_pred HHHHHHHH------------------HcCCcceEecCC------CcHHHHHHHhcCCCeeEEec----------------
Q 019173 145 IGEMKKLV------------------EEGKIKYIGLSE------ASPDTIRRAHAVHPITAVQL---------------- 184 (345)
Q Consensus 145 ~~~L~~L~------------------~~G~ir~iGvS~------~~~~~l~~~~~~~~~~~~q~---------------- 184 (345)
-.+++.++ ..++|.-||.++ .+...+.++++...+.++.+
T Consensus 136 ~~~l~~lv~~~~~~~~~~~~~~~~~~~~~~VNIIG~~~l~f~~~~Dl~eikrLL~~~Gi~vn~v~~~g~sl~di~~~~~A 215 (513)
T CHL00076 136 DRTLEQIVRFYLEKARKQGTLDQSKTDKPSVNIIGIFTLGFHNQHDCRELKRLLQDLGIEINQIIPEGGSVEDLKNLPKA 215 (513)
T ss_pred HHHHHHHHHHHhhcccccccccccCCCCCcEEEEecCCCCCCCcchHHHHHHHHHHCCCeEEEEECCCCCHHHHHhcccC
Confidence 12222222 246688888764 34567888877766665533
Q ss_pred cccccc-cccccchhhHHH-hhCCeEEeecCCC
Q 019173 185 EWSLWT-RDIENEIVPLCR-ELGIGIVPYSPLG 215 (345)
Q Consensus 185 ~~nl~~-~~~~~~~l~~~~-~~gi~v~a~~pl~ 215 (345)
.+|+.. +.....+.++.+ +.|++++...|++
T Consensus 216 ~~NIvl~~~~g~~~A~~Le~~fgiP~i~~~PiG 248 (513)
T CHL00076 216 WFNIVPYREVGLMTAKYLEKEFGMPYISTTPMG 248 (513)
T ss_pred cEEEEechhhhHHHHHHHHHHhCCCeEeeccCC
Confidence 122222 111123344444 4589888777875
No 151
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=29.00 E-value=4.1e+02 Score=23.57 Aligned_cols=22 Identities=14% Similarity=0.223 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHHcCCCeeec
Q 019173 40 SEEDGISIIKHAFNKGITFFDT 61 (345)
Q Consensus 40 ~~~~a~~~l~~A~~~Gi~~~DT 61 (345)
-+|.....++.|++.|...|++
T Consensus 20 ~pENT~~Af~~A~~~G~d~vE~ 41 (249)
T PRK09454 20 APENTLAAIDVGARYGHRMIEF 41 (249)
T ss_pred CChHHHHHHHHHHHcCCCEEEE
Confidence 4688999999999999999883
No 152
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=28.97 E-value=4.4e+02 Score=23.82 Aligned_cols=99 Identities=17% Similarity=0.144 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEE-eccCCCC-CCHH-H---HHHHHHHHHHc-CCcceEecCCCcHHHHHHHhcCCC
Q 019173 106 GNPEYVRSCCEASLKRLDVEYIDLYY-QHRVDTS-VPIE-E---TIGEMKKLVEE-GKIKYIGLSEASPDTIRRAHAVHP 178 (345)
Q Consensus 106 ~~~~~i~~~v~~sL~~Lg~d~iDl~~-lH~~~~~-~~~~-~---~~~~L~~L~~~-G~ir~iGvS~~~~~~l~~~~~~~~ 178 (345)
.+++.+.+.+++.+ .-|.++||+-- --+|+.. .+.+ | +...++.+++. +. -+.+-+++++.++.+++...
T Consensus 20 ~~~~~~~~~a~~~~-~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~--plsiDT~~~~vi~~al~~G~ 96 (257)
T TIGR01496 20 LSVDKAVAHAERML-EEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDV--PISVDTYRAEVARAALEAGA 96 (257)
T ss_pred CCHHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCC--eEEEeCCCHHHHHHHHHcCC
Confidence 46677777666654 66889999942 2234332 1222 2 55566666665 43 38888999999999998743
Q ss_pred eeEEeccccccccccccchhhHHHhhCCeEEeec
Q 019173 179 ITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYS 212 (345)
Q Consensus 179 ~~~~q~~~nl~~~~~~~~~l~~~~~~gi~v~a~~ 212 (345)
.-++-+ +... ..++++.++++|.+++.+.
T Consensus 97 ~iINsi--s~~~---~~~~~~l~~~~~~~vV~m~ 125 (257)
T TIGR01496 97 DIINDV--SGGQ---DPAMLEVAAEYGVPLVLMH 125 (257)
T ss_pred CEEEEC--CCCC---CchhHHHHHHcCCcEEEEe
Confidence 333333 3322 2578999999999999854
No 153
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=28.96 E-value=5e+02 Score=24.50 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeeecC
Q 019173 39 VSEEDGISIIKHAFNKGITFFDTA 62 (345)
Q Consensus 39 ~~~~~a~~~l~~A~~~Gi~~~DTA 62 (345)
.+.++..+++...-+.|+..|+.+
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg 44 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVT 44 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe
Confidence 478999999999999999999985
No 154
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=28.96 E-value=82 Score=20.33 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=29.8
Q ss_pred HHHHHHHcCCChHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcCC
Q 019173 255 IENLAKKYKCTSAQLALAWVLEQGDDVVPIPGTTKIKNLEDNIVSLTV 302 (345)
Q Consensus 255 l~~ia~~~g~s~~~~al~~~l~~~~v~~vivg~~~~~~l~~nl~a~~~ 302 (345)
|++||+..|+|++.+ ..+|+.+. -++..+.+++.+.++.++.
T Consensus 2 i~dIA~~agvS~~TV--Sr~ln~~~----~vs~~tr~rI~~~a~~lgY 43 (46)
T PF00356_consen 2 IKDIAREAGVSKSTV--SRVLNGPP----RVSEETRERILEAAEELGY 43 (46)
T ss_dssp HHHHHHHHTSSHHHH--HHHHTTCS----SSTHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHHCcCHHHH--HHHHhCCC----CCCHHHHHHHHHHHHHHCC
Confidence 678999999999864 45666652 4566677777777766554
No 155
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=28.94 E-value=5e+02 Score=24.53 Aligned_cols=97 Identities=16% Similarity=0.107 Sum_probs=45.2
Q ss_pred CCCeEEEeccccccCCccccccCCCHHHHHHHHHHHHhhcCCCcccEE-Eecc-CCCC----CCHHHHHHHHHHHHHcCC
Q 019173 83 RENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEASLKRLDVEYIDLY-YQHR-VDTS----VPIEETIGEMKKLVEEGK 156 (345)
Q Consensus 83 R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~-~lH~-~~~~----~~~~~~~~~L~~L~~~G~ 156 (345)
..++.|..|++..... ....+.+.. ..+-+.|+.+|+|||++- ..|. +... .+.........++++.=.
T Consensus 202 G~d~~v~iRi~~~D~~----~~g~~~~e~-~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~ 276 (353)
T cd02930 202 GEDFIIIYRLSMLDLV----EGGSTWEEV-VALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVD 276 (353)
T ss_pred CCCceEEEEecccccC----CCCCCHHHH-HHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCC
Confidence 3456666676543110 011333333 244455677777777661 2231 1110 000111233444555445
Q ss_pred cceEecCC-CcHHHHHHHhcCCCeeEEec
Q 019173 157 IKYIGLSE-ASPDTIRRAHAVHPITAVQL 184 (345)
Q Consensus 157 ir~iGvS~-~~~~~l~~~~~~~~~~~~q~ 184 (345)
+-=++... ++++.++++++....+.+++
T Consensus 277 iPVi~~G~i~~~~~a~~~i~~g~~D~V~~ 305 (353)
T cd02930 277 IPVIASNRINTPEVAERLLADGDADMVSM 305 (353)
T ss_pred CCEEEcCCCCCHHHHHHHHHCCCCChhHh
Confidence 55555544 36666777776666666555
No 156
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=28.74 E-value=1e+02 Score=27.72 Aligned_cols=76 Identities=14% Similarity=0.257 Sum_probs=44.8
Q ss_pred CCCccccccccccccCCCCCCCC--CCHHHHHHHHHHHH----HcCCCeeecCC--CCCCCcHHHHHHHHHhc-------
Q 019173 16 TQGLEVSKLGFGCMSLSGGYNSP--VSEEDGISIIKHAF----NKGITFFDTAD--KYGPYTNEILLGKALKM------- 80 (345)
Q Consensus 16 ~tg~~vs~lg~G~~~~g~~~~~~--~~~~~a~~~l~~A~----~~Gi~~~DTA~--~Yg~g~sE~~lG~~l~~------- 80 (345)
.+|+++|.+||.+=+=-. +|+. ...+++.++++.|+ ++|||.|--|- .|=.-.+|....++...
T Consensus 65 etgv~ipSmClSaHRRfP-fGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAGYDVYYE~~d~eT~~rFi~g~~~a~~l 143 (287)
T COG3623 65 ETGVRIPSMCLSAHRRFP-FGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAGYDVYYEEADEETRQRFIEGLKWAVEL 143 (287)
T ss_pred HhCCCccchhhhhhccCC-CCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeeccceeeeccCCHHHHHHHHHHHHHHHHH
Confidence 578999999998643211 3333 23566766666655 57999998884 23222345555555443
Q ss_pred CCCCCeEEEecc
Q 019173 81 LPRENIQVATKF 92 (345)
Q Consensus 81 ~~R~~~~i~tK~ 92 (345)
..+..+.++.-+
T Consensus 144 A~~aqV~lAvEi 155 (287)
T COG3623 144 AARAQVMLAVEI 155 (287)
T ss_pred HHhhccEEEeee
Confidence 245556665554
No 157
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=28.53 E-value=2.5e+02 Score=23.45 Aligned_cols=87 Identities=17% Similarity=0.148 Sum_probs=54.9
Q ss_pred EEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcCC--CeeEEeccccccccc-----cccchhhHHH
Q 019173 130 YYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVH--PITAVQLEWSLWTRD-----IENEIVPLCR 202 (345)
Q Consensus 130 ~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~--~~~~~q~~~nl~~~~-----~~~~~l~~~~ 202 (345)
+|+..|..+ ..+++++..-+=-+++-|++|-|...+.....++++.. .+.++-+.|+.-... .+.++.+..+
T Consensus 2 ~yf~~pG~e-NT~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~ 80 (186)
T COG1751 2 VYFEKPGKE-NTDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHHAGFEEKGTQEMDEEVRKELK 80 (186)
T ss_pred ccccCCccc-chHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEeecccccCCceecCHHHHHHHH
Confidence 345555443 35677776666666778899988765555444444442 245565666655543 2368889999
Q ss_pred hhCCeEEeecCCCcc
Q 019173 203 ELGIGIVPYSPLGRG 217 (345)
Q Consensus 203 ~~gi~v~a~~pl~~G 217 (345)
++|..|+.-|-.-+|
T Consensus 81 erGa~v~~~sHalSg 95 (186)
T COG1751 81 ERGAKVLTQSHALSG 95 (186)
T ss_pred HcCceeeeehhhhhc
Confidence 999999876554444
No 158
>cd08620 PI-PLCXDc_like_1 Catalytic domain of uncharacterized hypothetical proteins similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins. This subfamily corresponds to the catalytic domain present in a group of uncharacterized hypothetical proteins found in bacteria and fungi, which are similar to eukaryotic phosphatidylinositol-specific phospholipase C, X domain containing proteins (PI-PLCXD). The typical eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) has a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains. The catalytic core domain is assembled from two highly conserved X- and Y-regions split by a divergent linker sequence. In contrast, eukaryotic PI-PLCXDs contain a single TIM-barrel type catalytic domain, X domain, and are more closely related to bacterial PI-PLCs, which participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidyl
Probab=28.48 E-value=1.8e+02 Score=26.75 Aligned_cols=15 Identities=20% Similarity=0.487 Sum_probs=11.6
Q ss_pred HHHHHHcCCCeeecC
Q 019173 48 IKHAFNKGITFFDTA 62 (345)
Q Consensus 48 l~~A~~~Gi~~~DTA 62 (345)
+..=++.|||+||--
T Consensus 36 i~~QL~~GiRyfDlR 50 (281)
T cd08620 36 VSTQLALGARYFDFR 50 (281)
T ss_pred HHHHHhcCcEEEEEE
Confidence 555678899999863
No 159
>PRK01313 rnpA ribonuclease P; Reviewed
Probab=28.47 E-value=2.9e+02 Score=22.15 Aligned_cols=62 Identities=19% Similarity=0.222 Sum_probs=42.8
Q ss_pred CCCCeEEEeccccccCCccccccCCCHHHHHHHHHHHHhhcCC----CcccEEEeccCCCC-CCHHHHHHHHHHHHH
Q 019173 82 PRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEASLKRLDV----EYIDLYYQHRVDTS-VPIEETIGEMKKLVE 153 (345)
Q Consensus 82 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~----d~iDl~~lH~~~~~-~~~~~~~~~L~~L~~ 153 (345)
.|=-+.|+-|+|. ...++.|++.+.+++..+.. ...|++++..+... .++.++.+.|..+.+
T Consensus 47 ~RvG~~VSKKvG~----------AV~RNRiKR~lRE~fR~~~~~~~~~g~DiVivar~~~~~~~~~~l~~~L~~~l~ 113 (129)
T PRK01313 47 PRVGFTVTKKNGN----------AVERNRIRRRLKEAVRLHAGFDMAPGTDYVIVARRDALNAPFSQLTEELSRRIE 113 (129)
T ss_pred cEEEEEEecccCc----------chHHHHHHHHHHHHHHHhchhccCCCceEEEEECcccccCCHHHHHHHHHHHHH
Confidence 3444566666652 34578888888888887653 45799999988654 466777777776655
No 160
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=28.41 E-value=1.3e+02 Score=21.96 Aligned_cols=28 Identities=14% Similarity=0.146 Sum_probs=23.9
Q ss_pred hhhHHHHHHHHHHHHHcCCChHHHHHHH
Q 019173 246 DRNRSIYFRIENLAKKYKCTSAQLALAW 273 (345)
Q Consensus 246 ~~~~~~~~~l~~ia~~~g~s~~~~al~~ 273 (345)
+.....+.+|.++|++.|++.+++|.-.
T Consensus 48 ~~V~~sl~kL~~La~~N~v~feeLc~YA 75 (82)
T PF11020_consen 48 EKVMDSLSKLYKLAKENNVSFEELCVYA 75 (82)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 4667889999999999999999988533
No 161
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=28.29 E-value=1.8e+02 Score=24.22 Aligned_cols=72 Identities=18% Similarity=0.150 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEec-cccccCCccccccCCCHHHHHHHHHHH
Q 019173 40 SEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLPRENIQVATK-FGFAELGLDAVIVKGNPEYVRSCCEAS 118 (345)
Q Consensus 40 ~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~R~~~~i~tK-~~~~~~~~~~~~~~~~~~~i~~~v~~s 118 (345)
+++...-.+++|-+.||.+|=.|..||. +-..+-..+.. . =++++.|. .|.... ....+...+++-
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~--tA~k~lemveg-~-lkvVvVthh~Gf~e~---------g~~e~~~E~~~~ 78 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGY--TALKALEMVEG-D-LKVVVVTHHAGFEEK---------GTQEMDEEVRKE 78 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccH--HHHHHHHhccc-C-ceEEEEEeecccccC---------CceecCHHHHHH
Confidence 4566677788899999999999999984 33333333322 2 23444443 343321 233466788888
Q ss_pred HhhcCC
Q 019173 119 LKRLDV 124 (345)
Q Consensus 119 L~~Lg~ 124 (345)
|+..|.
T Consensus 79 L~erGa 84 (186)
T COG1751 79 LKERGA 84 (186)
T ss_pred HHHcCc
Confidence 998883
No 162
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=28.07 E-value=3.7e+02 Score=25.63 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEec
Q 019173 105 KGNPEYVRSCCEASLKRLDVEYIDLYYQH 133 (345)
Q Consensus 105 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH 133 (345)
..+.+.+++.++..+ +++.+++.+|.+.
T Consensus 171 gqt~~~~~~tl~~~~-~l~~~~i~~y~l~ 198 (375)
T PRK05628 171 GESDDDWRASLDAAL-EAGVDHVSAYALI 198 (375)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEeeeee
Confidence 457788888777555 5889999888776
No 163
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=27.93 E-value=4.6e+02 Score=23.75 Aligned_cols=130 Identities=15% Similarity=0.116 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHHcCCCeeec---CCCCCCC----cHHHHHHHHHhcCCCC-CeEEEeccccccCCccccccCCCHHHH
Q 019173 40 SEEDGISIIKHAFNKGITFFDT---ADKYGPY----TNEILLGKALKMLPRE-NIQVATKFGFAELGLDAVIVKGNPEYV 111 (345)
Q Consensus 40 ~~~~a~~~l~~A~~~Gi~~~DT---A~~Yg~g----~sE~~lG~~l~~~~R~-~~~i~tK~~~~~~~~~~~~~~~~~~~i 111 (345)
+.++..+..+.+.+.|+..||. +++...+ ...+.+.+.++...+. ++-|..|+... .+.+.+
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~----------~~~~~~ 178 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPY----------FDLEDI 178 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCC----------CCHHHH
Confidence 5788889999999999999984 4433221 2345555555552111 56688888742 234444
Q ss_pred HHHHHHHHhhcCCCcccEEEeccCCCC-------------C---C------HHHHHHHHHHHHHcC--CcceEecCCC-c
Q 019173 112 RSCCEASLKRLDVEYIDLYYQHRVDTS-------------V---P------IEETIGEMKKLVEEG--KIKYIGLSEA-S 166 (345)
Q Consensus 112 ~~~v~~sL~~Lg~d~iDl~~lH~~~~~-------------~---~------~~~~~~~L~~L~~~G--~ir~iGvS~~-~ 166 (345)
.+- -+.++..|. |.+.+|+-... . . ..-.++.+.++++.= .+.-||.... +
T Consensus 179 ~~~-a~~l~~~Ga---d~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~ 254 (289)
T cd02810 179 VEL-AKAAERAGA---DGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDS 254 (289)
T ss_pred HHH-HHHHHHcCC---CEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 443 345677785 44455432110 0 0 011355566666643 5677777664 4
Q ss_pred HHHHHHHhcCCCeeEEec
Q 019173 167 PDTIRRAHAVHPITAVQL 184 (345)
Q Consensus 167 ~~~l~~~~~~~~~~~~q~ 184 (345)
.+.+.+++... .+.+|+
T Consensus 255 ~~da~~~l~~G-Ad~V~v 271 (289)
T cd02810 255 GEDVLEMLMAG-ASAVQV 271 (289)
T ss_pred HHHHHHHHHcC-ccHheE
Confidence 56666666533 555655
No 164
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=27.93 E-value=4.9e+02 Score=24.12 Aligned_cols=136 Identities=14% Similarity=0.085 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHHHHcCCCeeecC---------CCCCCC---cHHHHHHHHHhcCCCC--CeEEEeccccccCCccccccC
Q 019173 40 SEEDGISIIKHAFNKGITFFDTA---------DKYGPY---TNEILLGKALKMLPRE--NIQVATKFGFAELGLDAVIVK 105 (345)
Q Consensus 40 ~~~~a~~~l~~A~~~Gi~~~DTA---------~~Yg~g---~sE~~lG~~l~~~~R~--~~~i~tK~~~~~~~~~~~~~~ 105 (345)
++++..+..+.+.+.|+..||.- ..|+.. ...+.+.+.++. -|+ .+-|+.|+.....+
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~-vr~~~~~pv~vKir~g~~~------- 144 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKA-VVDAVDIPVTVKIRIGWDD------- 144 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHH-HHhhcCCCEEEEEEcccCC-------
Confidence 67888888999999999999851 123221 123555555555 222 35677887432110
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCCCH--HHHHHHHHHHHHcCCcceEecCC-CcHHHHHHHhcCCCeeEE
Q 019173 106 GNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPI--EETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAV 182 (345)
Q Consensus 106 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~--~~~~~~L~~L~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~ 182 (345)
....+ ..+-+.|+..|+ |.+.+|........ .-.|+.+.++++.=.+--|+... .+.+.+.++++....+.+
T Consensus 145 -~~~~~-~~~a~~l~~~G~---d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~V 219 (319)
T TIGR00737 145 -AHINA-VEAARIAEDAGA---QAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGV 219 (319)
T ss_pred -CcchH-HHHHHHHHHhCC---CEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEE
Confidence 01111 245556777885 55566754321111 12467777777765677777766 467778888876777877
Q ss_pred eccccc
Q 019173 183 QLEWSL 188 (345)
Q Consensus 183 q~~~nl 188 (345)
++--.+
T Consensus 220 migR~~ 225 (319)
T TIGR00737 220 MIGRGA 225 (319)
T ss_pred EEChhh
Confidence 774433
No 165
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=27.48 E-value=4.5e+02 Score=23.53 Aligned_cols=153 Identities=16% Similarity=0.166 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHHcCCCeeecCC-CCCC-C-cHHHHHHHHHhcCCCCCeEEEeccccccCCccccccCCCHHHHHHHHH
Q 019173 40 SEEDGISIIKHAFNKGITFFDTAD-KYGP-Y-TNEILLGKALKMLPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCE 116 (345)
Q Consensus 40 ~~~~a~~~l~~A~~~Gi~~~DTA~-~Yg~-g-~sE~~lG~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~ 116 (345)
+.+|+. .|++.|...||.=+ .-|. | ....++....+. -..+.-++..+|-.+ +.|..+..+..
T Consensus 9 ~~~EA~----~a~~~gaDiID~K~P~~GaLGA~~~~vi~~i~~~-~~~~~pvSAtiGDlp---------~~p~~~~~aa~ 74 (235)
T PF04476_consen 9 NVEEAE----EALAGGADIIDLKNPAEGALGALFPWVIREIVAA-VPGRKPVSATIGDLP---------MKPGTASLAAL 74 (235)
T ss_pred CHHHHH----HHHhCCCCEEEccCCCCCCCCCCCHHHHHHHHHH-cCCCCceEEEecCCC---------CCchHHHHHHH
Confidence 455554 56788999999743 2221 2 244555444433 333466777777332 33455555555
Q ss_pred HHHhhcCCCcccEEEeccCCCCCCHHHHH----HHHHHHHHcCCcceEecCCCc------HHHHHHHhcCCCeeEEeccc
Q 019173 117 ASLKRLDVEYIDLYYQHRVDTSVPIEETI----GEMKKLVEEGKIKYIGLSEAS------PDTIRRAHAVHPITAVQLEW 186 (345)
Q Consensus 117 ~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~----~~L~~L~~~G~ir~iGvS~~~------~~~l~~~~~~~~~~~~q~~~ 186 (345)
..- .-|+||+-+-+.-..+... ..+.+ +++.+.-.+-++-+++++.+. +..+-.+.....++.+++.-
T Consensus 75 ~~a-~~GvdyvKvGl~g~~~~~~-a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDT 152 (235)
T PF04476_consen 75 GAA-ATGVDYVKVGLFGCKDYDE-AIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDT 152 (235)
T ss_pred HHH-hcCCCEEEEecCCCCCHHH-HHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEec
Confidence 444 3589999887774433221 12222 333333334567788888773 44555555566678887743
Q ss_pred c------cccccc---ccchhhHHHhhCCeE
Q 019173 187 S------LWTRDI---ENEIVPLCRELGIGI 208 (345)
Q Consensus 187 n------l~~~~~---~~~~l~~~~~~gi~v 208 (345)
- +++.-. -.+.++.|+++|+.+
T Consensus 153 a~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 153 ADKDGGSLFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred ccCCCCchhhcCCHHHHHHHHHHHHHccchh
Confidence 2 333221 156778888888754
No 166
>PRK15108 biotin synthase; Provisional
Probab=27.38 E-value=5.4e+02 Score=24.36 Aligned_cols=105 Identities=13% Similarity=0.165 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeeecCCCC-CC-CcHHHHHHHHHhcCCCCCeEEEeccccccCCccccccCCCHHHHHHHHH
Q 019173 39 VSEEDGISIIKHAFNKGITFFDTADKY-GP-YTNEILLGKALKMLPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCE 116 (345)
Q Consensus 39 ~~~~~a~~~l~~A~~~Gi~~~DTA~~Y-g~-g~sE~~lG~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~ 116 (345)
.+.+++.+..+.+.+.|++.|-..... .. ...-+.+-+.++..+...+.++.-.|. .+.+ .-
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G~-----------ls~e-----~l 139 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETCMTLGT-----------LSES-----QA 139 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCCEEEEeCCc-----------CCHH-----HH
Confidence 588999999999999999988432211 11 122355666665522222333222331 2222 33
Q ss_pred HHHhhcCCCcccEEEeccC------CCCCCHHHHHHHHHHHHHcCCcce
Q 019173 117 ASLKRLDVEYIDLYYQHRV------DTSVPIEETIGEMKKLVEEGKIKY 159 (345)
Q Consensus 117 ~sL~~Lg~d~iDl~~lH~~------~~~~~~~~~~~~L~~L~~~G~ir~ 159 (345)
+-|+..|+|++-+-+=-.| -....+++.++.++.+++.|.--.
T Consensus 140 ~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~ 188 (345)
T PRK15108 140 QRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVC 188 (345)
T ss_pred HHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCcee
Confidence 3366667665433110111 112357889999999999996433
No 167
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=27.07 E-value=6e+02 Score=25.48 Aligned_cols=125 Identities=19% Similarity=0.248 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCCCCCeEEEeccccccCCccccccCCCHHHHHHHHHHHHhhcCCCc--ccEEEeccCCCCCCHHHHHHH
Q 019173 70 NEILLGKALKMLPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEASLKRLDVEY--IDLYYQHRVDTSVPIEETIGE 147 (345)
Q Consensus 70 sE~~lG~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~--iDl~~lH~~~~~~~~~~~~~~ 147 (345)
.-+-+|.+|+. +.+++|+..+... ++.-..+..-+.+.+++-++.. |-+=+-.+ .-.+.......
T Consensus 340 ~~~dlG~~L~~--~~~l~VsINl~a~---------Dl~s~rli~~~~~~l~~~~v~pqQI~lElTER--~f~D~~~~~~i 406 (524)
T COG4943 340 VFRDLGDLLRQ--HRDLHVSINLSAS---------DLASPRLIDRLNRKLAQYQVRPQQIALELTER--TFADPKKMTPI 406 (524)
T ss_pred HHHHhHHHHHh--CcceEEEEeeeeh---------hhcCchHHHHHHHHHHhcCcChHHheeehhhh--hhcCchhhhHH
Confidence 34567777775 4557777766532 2334446666667777666422 11111000 00233456778
Q ss_pred HHHHHHcCCcceEecCCCcH--HHHHHHhcCCCeeEEecccc--------ccccccccchhhHHHhhCCeEEe
Q 019173 148 MKKLVEEGKIKYIGLSEASP--DTIRRAHAVHPITAVQLEWS--------LWTRDIENEIVPLCRELGIGIVP 210 (345)
Q Consensus 148 L~~L~~~G~ir~iGvS~~~~--~~l~~~~~~~~~~~~q~~~n--------l~~~~~~~~~l~~~~~~gi~v~a 210 (345)
+.++++.|.=-+| ..|.. +.|..+.+ -++|.+-+.=+ ....-....+++.+++.|+.+++
T Consensus 407 I~r~ReaG~~IyI--DDFGTGYSnL~YLq~-L~VDaLKIDKsFvdtlg~~~a~~~I~~hII~MAk~L~L~iVa 476 (524)
T COG4943 407 ILRLREAGHEIYI--DDFGTGYSNLHYLQS-LPVDALKIDKSFVDTLGTDSASHLIAPHIIEMAKSLGLKIVA 476 (524)
T ss_pred HHHHHhcCCeEEE--ccCcCcchhHHHHhh-CCccceeccHHHHHhhccCcccchhHHHHHHHHHHcCCcEEe
Confidence 9999999985544 32221 11222222 22333333222 22222236899999999999997
No 168
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=27.03 E-value=1.2e+02 Score=25.85 Aligned_cols=51 Identities=18% Similarity=0.276 Sum_probs=34.5
Q ss_pred HHHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCc
Q 019173 113 SCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEAS 166 (345)
Q Consensus 113 ~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~ 166 (345)
.+++++|..- .-++++++.......-++-+..|..|..+|++|++-+.-++
T Consensus 67 ~~f~~~L~e~---sn~l~lv~~~~rNp~S~~hvq~l~~l~nqg~Lr~~nLG~~S 117 (173)
T PF10171_consen 67 QSFEDALLEA---SNDLLLVSPAIRNPTSDKHVQRLMRLRNQGRLRYLNLGLFS 117 (173)
T ss_pred HHHHHHHHHH---hCceeccChhhcCchHHHHHHHHHHHhcCCceEEeeeeeEE
Confidence 3444444443 25667776655544556789999999999999998665444
No 169
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=26.78 E-value=4.1e+02 Score=22.76 Aligned_cols=101 Identities=16% Similarity=0.193 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhhcCCCcccEEEe-ccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcH--HHHHHHhcCCCeeEEec
Q 019173 108 PEYVRSCCEASLKRLDVEYIDLYYQ-HRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASP--DTIRRAHAVHPITAVQL 184 (345)
Q Consensus 108 ~~~i~~~v~~sL~~Lg~d~iDl~~l-H~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~--~~l~~~~~~~~~~~~q~ 184 (345)
.+.....+...++..+...-.+++- ...........+.+.+..|++.|- .+++.++.. ..+..+. ..+++++=+
T Consensus 97 ~~~~~~~~~~~l~~~~~~~~~l~iei~e~~~~~~~~~~~~~~~~l~~~G~--~l~ld~~g~~~~~~~~l~-~~~~d~iKl 173 (240)
T cd01948 97 DPDFLDRLLELLAETGLPPRRLVLEITESALIDDLEEALATLRRLRALGV--RIALDDFGTGYSSLSYLK-RLPVDYLKI 173 (240)
T ss_pred CcHHHHHHHHHHHHcCCCHHHEEEEEecchhhCCHHHHHHHHHHHHHCCC--eEEEeCCCCcHhhHHHHH-hCCCCEEEE
Confidence 3445677888888888664233222 222222345568899999999998 577776532 3333333 335677666
Q ss_pred cccccccc--------cccchhhHHHhhCCeEEee
Q 019173 185 EWSLWTRD--------IENEIVPLCRELGIGIVPY 211 (345)
Q Consensus 185 ~~nl~~~~--------~~~~~l~~~~~~gi~v~a~ 211 (345)
..+++..- .-..++..|+..|+.+++-
T Consensus 174 d~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 208 (240)
T cd01948 174 DRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAE 208 (240)
T ss_pred CHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEE
Confidence 55544321 1157899999999999973
No 170
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=26.73 E-value=5.9e+02 Score=24.65 Aligned_cols=105 Identities=17% Similarity=0.218 Sum_probs=62.6
Q ss_pred HHHHHHHHHHH-----------hhcCCCcccEEEeccCCCC-----CCHHHHHHHHHHHHHcCCcc-eEecC---CCcHH
Q 019173 109 EYVRSCCEASL-----------KRLDVEYIDLYYQHRVDTS-----VPIEETIGEMKKLVEEGKIK-YIGLS---EASPD 168 (345)
Q Consensus 109 ~~i~~~v~~sL-----------~~Lg~d~iDl~~lH~~~~~-----~~~~~~~~~L~~L~~~G~ir-~iGvS---~~~~~ 168 (345)
+.+++.+++.. +.+| +|++.||.-..+ .+.++..+..++..+.=.+= -|+=| ..+++
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~---aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPLIL~gsg~~~kD~e 204 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFG---ADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPIVIGGSGNPEKDPL 204 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhC---CCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCEEEeCCCCCcCCHH
Confidence 55666666655 5666 688888875432 23456666666654433322 22222 45788
Q ss_pred HHHHHhcCCCe-eEEeccccccccccccchhhHHHhhCCeEEeecCCCccc
Q 019173 169 TIRRAHAVHPI-TAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLGRGF 218 (345)
Q Consensus 169 ~l~~~~~~~~~-~~~q~~~nl~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~ 218 (345)
.++++++...- .++...-|+-+ + ...+.+.|+++|..|++++|..-|.
T Consensus 205 VLeaaLe~~~G~kpLL~SAt~e~-N-y~~ia~lAk~yg~~Vvv~s~~Din~ 253 (389)
T TIGR00381 205 VLEKAAEVAEGERCLLASANLDL-D-YEKIANAAKKYGHVVLSWTIMDINM 253 (389)
T ss_pred HHHHHHHHhCCCCcEEEecCchh-h-HHHHHHHHHHhCCeEEEEcCCcHHH
Confidence 88888766321 22222122210 1 2689999999999999999887554
No 171
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=26.69 E-value=4.3e+02 Score=25.83 Aligned_cols=143 Identities=13% Similarity=0.126 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHHHcCCCee-ecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeccccccC---C--ccccccCCCHHHHHH
Q 019173 40 SEEDGISIIKHAFNKGITFF-DTADKYGPYTNEILLGKALKMLPRENIQVATKFGFAEL---G--LDAVIVKGNPEYVRS 113 (345)
Q Consensus 40 ~~~~a~~~l~~A~~~Gi~~~-DTA~~Yg~g~sE~~lG~~l~~~~R~~~~i~tK~~~~~~---~--~~~~~~~~~~~~i~~ 113 (345)
+.++=.+=++.|++.|-..| |-+. .| .-..+-+.+-+ ...+-|-|- ..... . ..+...+.+.+.+..
T Consensus 75 d~~~E~~K~~~A~~~GADtiMDLSt-gg---dl~~iR~~il~--~s~vpvGTV-PiYqa~~~~~~k~~~~~~mt~d~~~~ 147 (431)
T PRK13352 75 DIEEELEKAKVAVKYGADTIMDLST-GG---DLDEIRRAIIE--ASPVPVGTV-PIYQAAVEAARKYGSVVDMTEDDLFD 147 (431)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeccC-CC---CHHHHHHHHHH--cCCCCCcCh-hHHHHHHHHHhcCCChhhCCHHHHHH
Confidence 45555555899999998644 4442 34 34445554422 111222111 11000 0 001224678888888
Q ss_pred HHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcCCCeeEEecccccccccc
Q 019173 114 CCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWTRDI 193 (345)
Q Consensus 114 ~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~nl~~~~~ 193 (345)
.+++..+ +=+|++-+|+-- +.+.++.++++|+ ..|+-+-....+...+.... +=|++..+.
T Consensus 148 ~ie~qa~----~GVDfmTiHcGi-------~~~~~~~~~~~~R--~~giVSRGGs~~~~WM~~n~------~ENPlye~f 208 (431)
T PRK13352 148 VIEKQAK----DGVDFMTIHCGV-------TRETLERLKKSGR--IMGIVSRGGSFLAAWMLHNN------KENPLYEHF 208 (431)
T ss_pred HHHHHHH----hCCCEEEEccch-------hHHHHHHHHhcCC--ccCeecCCHHHHHHHHHHcC------CcCchHHHH
Confidence 8888776 458889999842 3577888999885 56776666666655544332 345555553
Q ss_pred ccchhhHHHhhCCeEE
Q 019173 194 ENEIVPLCRELGIGIV 209 (345)
Q Consensus 194 ~~~~l~~~~~~gi~v~ 209 (345)
..+++.|+++++.+-
T Consensus 209 -D~lLeI~~~yDVtlS 223 (431)
T PRK13352 209 -DYLLEILKEYDVTLS 223 (431)
T ss_pred -HHHHHHHHHhCeeee
Confidence 589999999998875
No 172
>PRK03459 rnpA ribonuclease P; Reviewed
Probab=26.59 E-value=3.3e+02 Score=21.59 Aligned_cols=63 Identities=10% Similarity=-0.002 Sum_probs=42.3
Q ss_pred CCCCeEEEeccccccCCccccccCCCHHHHHHHHHHHHhhcCCC---cccEEEeccCCCC-CCHHHHHHHHHHHHHc
Q 019173 82 PRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEASLKRLDVE---YIDLYYQHRVDTS-VPIEETIGEMKKLVEE 154 (345)
Q Consensus 82 ~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d---~iDl~~lH~~~~~-~~~~~~~~~L~~L~~~ 154 (345)
+|=-+.|+-|+|. ...++.+++.+.++.+.+..+ -.|++++-.+... .++.++.+.|+.+.+.
T Consensus 48 ~R~G~~VsKKvG~----------AV~RNRiKR~lRe~~R~~~~~l~~g~D~Viiar~~~~~~~~~~l~~~l~~ll~k 114 (122)
T PRK03459 48 PRFGLVVSKAVGN----------AVIRHRVSRRLRHICADIVDQVPETHHVVIRALPGAATASSAELERDVRAGLGK 114 (122)
T ss_pred CEEEEEEeeeccc----------hhHHHHHHHHHHHHHHHhhhccCCCcEEEEEECcccccCCHHHHHHHHHHHHHH
Confidence 4444667777663 234677888888877776643 3699999887654 4677777777666554
No 173
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=26.36 E-value=3e+02 Score=27.15 Aligned_cols=87 Identities=10% Similarity=0.079 Sum_probs=55.6
Q ss_pred EEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhcCCCeeEEeccccccccccccchhhHHHhhCCe
Q 019173 129 LYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWTRDIENEIVPLCRELGIG 207 (345)
Q Consensus 129 l~~lH~~~~~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~nl~~~~~~~~~l~~~~~~gi~ 207 (345)
+.++-.|-+..+..+-++.+.+|++...|- ..|=+.++...+..+++...++++|......--....++.+.|+.+|+.
T Consensus 252 ~~~iEePv~~~d~~~~~~~la~Lr~~~~iPIa~dEs~~~~~~~~~li~~~avdi~~~d~~~gGIt~~~kIa~lA~a~Gi~ 331 (441)
T TIGR03247 252 LAYAEDPCGAEQGYSGREVMAEFRRATGLPTATNMIATDWRQMGHALQLQAVDIPLADPHFWTMQGSVRVAQMCHDWGLT 331 (441)
T ss_pred hceEeCCCCcccccchHHHHHHHHHhCCCCEEcCCccCCHHHHHHHHHhCCCCEEeccCCcchHHHHHHHHHHHHHcCCE
Confidence 445555544332112256677787765554 2244557788888888888888888875321111126899999999999
Q ss_pred EEeecCCC
Q 019173 208 IVPYSPLG 215 (345)
Q Consensus 208 v~a~~pl~ 215 (345)
+..++...
T Consensus 332 v~~h~~~~ 339 (441)
T TIGR03247 332 WGSHSNNH 339 (441)
T ss_pred EEEeCCcc
Confidence 88776543
No 174
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=26.19 E-value=6.2e+02 Score=24.70 Aligned_cols=108 Identities=13% Similarity=0.118 Sum_probs=58.0
Q ss_pred CCCCCCcHHHHHHHHHhc----CCCCCeEEEeccccccCCccccccCCCHHHHHHHHHHHHhhcCC-CcccEEEeccCCC
Q 019173 63 DKYGPYTNEILLGKALKM----LPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEASLKRLDV-EYIDLYYQHRVDT 137 (345)
Q Consensus 63 ~~Yg~g~sE~~lG~~l~~----~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~-d~iDl~~lH~~~~ 137 (345)
-.|| .|+-|-+++++ .+.+=++|.|-+-..- --+++..-+++.-++... ..+.++.++.|..
T Consensus 65 ~V~G---g~~~L~~ai~~~~~~~~p~~I~v~ttC~~~i----------iGdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf 131 (435)
T cd01974 65 AVFG---GQNNLIDGLKNAYAVYKPDMIAVSTTCMAEV----------IGDDLNAFIKNAKNKGSIPADFPVPFANTPSF 131 (435)
T ss_pred eEEC---cHHHHHHHHHHHHHhcCCCEEEEeCCchHhh----------hhccHHHHHHHHHHhccCCCCCeEEEecCCCC
Confidence 4677 57777777776 3444467777765331 112344444443333321 1478999998866
Q ss_pred CCCH----HHHHHHHH-HHHH-------cCCcceEe-cCCC-c-HHHHHHHhcCCCeeEEe
Q 019173 138 SVPI----EETIGEMK-KLVE-------EGKIKYIG-LSEA-S-PDTIRRAHAVHPITAVQ 183 (345)
Q Consensus 138 ~~~~----~~~~~~L~-~L~~-------~G~ir~iG-vS~~-~-~~~l~~~~~~~~~~~~q 183 (345)
.... +.++++|- .+.. .+.|.=|| ..+. + .+.+.++++...+.++.
T Consensus 132 ~gs~~~G~~~a~~al~~~l~~~~~~~~~~~~VNli~~~~~~~d~~~el~~lL~~~Gl~~~~ 192 (435)
T cd01974 132 VGSHITGYDNMVKGILTHLTEGSGGAGKNGKLNIIPGFDTYAGNMREIKRLLELMGVDYTI 192 (435)
T ss_pred ccCHHHHHHHHHHHHHHHHhcccCCCCCCCeEEEECCCCCCcchHHHHHHHHHHcCCCEEE
Confidence 5432 33444443 2222 33455555 2222 2 57788888876666553
No 175
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=26.09 E-value=6.7e+02 Score=25.02 Aligned_cols=113 Identities=10% Similarity=0.020 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhcCC-CCCeEEEeccccccCCccccccCCCHHHHHHHHHHH
Q 019173 40 SEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLP-RENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEAS 118 (345)
Q Consensus 40 ~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~-R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~s 118 (345)
+.+-....++.|.+.|+..|=..++-.+ .+.+-.+++... ....+..+.+... .+.++.+.+.+.+++
T Consensus 103 pddvv~~fv~~a~~~Gidi~Rifd~lnd---~~n~~~ai~~ak~~G~~~~~~i~yt~-------sp~~t~~y~~~~a~~- 171 (468)
T PRK12581 103 ADDIVDKFISLSAQNGIDVFRIFDALND---PRNIQQALRAVKKTGKEAQLCIAYTT-------SPVHTLNYYLSLVKE- 171 (468)
T ss_pred cchHHHHHHHHHHHCCCCEEEEcccCCC---HHHHHHHHHHHHHcCCEEEEEEEEEe-------CCcCcHHHHHHHHHH-
Confidence 3466777899999999998877665543 333333333211 1111112222211 134566667666655
Q ss_pred HhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcH
Q 019173 119 LKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASP 167 (345)
Q Consensus 119 L~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~ 167 (345)
+..+|. |.+.|-...-.....++.+.+..+++...+ -||+=.|+.
T Consensus 172 l~~~Ga---d~I~IkDtaG~l~P~~v~~Lv~alk~~~~~-pi~~H~Hnt 216 (468)
T PRK12581 172 LVEMGA---DSICIKDMAGILTPKAAKELVSGIKAMTNL-PLIVHTHAT 216 (468)
T ss_pred HHHcCC---CEEEECCCCCCcCHHHHHHHHHHHHhccCC-eEEEEeCCC
Confidence 456784 566665544444556666666666665443 377765543
No 176
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=26.08 E-value=1.7e+02 Score=28.14 Aligned_cols=65 Identities=14% Similarity=0.102 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCcceEecCCCcHHHHHHHh--cCCCeeEEeccccccccccccchhhHHHhhCCeEEee
Q 019173 144 TIGEMKKLVEEGKIKYIGLSEASPDTIRRAH--AVHPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPY 211 (345)
Q Consensus 144 ~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~--~~~~~~~~q~~~nl~~~~~~~~~l~~~~~~gi~v~a~ 211 (345)
-..++.+|.+.|.+.+|-.---..-.+.... ....+. --|.....+.-..+++.|+++||.|+.-
T Consensus 11 ~~~a~~~l~~~g~~d~l~~d~LaE~tma~~~~~~~~~p~---~gY~~~~~~~L~~~L~~~~~~gIkvI~N 77 (362)
T PF07287_consen 11 RPDAAVRLARGGDVDYLVGDYLAERTMAILARAKRKDPT---KGYAPDFVRDLRPLLPAAAEKGIKVITN 77 (362)
T ss_pred cHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHhhCCC---CCchHHHHHHHHHHHHHHHhCCCCEEEe
Confidence 3566777888888888866433221121111 111111 1133333333368999999999999975
No 177
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=26.05 E-value=2.7e+02 Score=27.44 Aligned_cols=61 Identities=20% Similarity=0.255 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEe-ccCCCC----------C-CHHH----HHHHHHHHHHcCCcceEecCCCcH
Q 019173 105 KGNPEYVRSCCEASLKRLDVEYIDLYYQ-HRVDTS----------V-PIEE----TIGEMKKLVEEGKIKYIGLSEASP 167 (345)
Q Consensus 105 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~l-H~~~~~----------~-~~~~----~~~~L~~L~~~G~ir~iGvS~~~~ 167 (345)
..+.+.+.+.++..+ +|+.++|.+|-+ |.|... . +.++ ...+.+.|.+.|-. .+|+++|..
T Consensus 215 gqt~e~~~~tl~~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~-~~~~~~far 291 (453)
T PRK13347 215 HQTVESFRETLDKVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYV-PIGLDHFAL 291 (453)
T ss_pred CCCHHHHHHHHHHHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCE-EEeccceeC
Confidence 347788888777766 588899988866 333210 0 1122 23456778888875 599999853
No 178
>PF14502 HTH_41: Helix-turn-helix domain
Probab=26.05 E-value=62 Score=21.25 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=23.7
Q ss_pred HHHHHHHHHcCCCh--HHHHHHHHHhCCCC
Q 019173 253 FRIENLAKKYKCTS--AQLALAWVLEQGDD 280 (345)
Q Consensus 253 ~~l~~ia~~~g~s~--~~~al~~~l~~~~v 280 (345)
+.+.++++++++|. .|-||.++-..+.|
T Consensus 7 ~tI~e~~~~~~vs~GtiQ~Alk~Le~~gaI 36 (48)
T PF14502_consen 7 PTISEYSEKFGVSRGTIQNALKFLEENGAI 36 (48)
T ss_pred CCHHHHHHHhCcchhHHHHHHHHHHHCCcE
Confidence 47899999999875 79999999988864
No 179
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=25.62 E-value=3.4e+02 Score=29.41 Aligned_cols=71 Identities=14% Similarity=0.061 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHHHhhcCC--------------------------CcccEEEeccCCCCCCH---HHHHHHHHHHHHcCC
Q 019173 106 GNPEYVRSCCEASLKRLDV--------------------------EYIDLYYQHRVDTSVPI---EETIGEMKKLVEEGK 156 (345)
Q Consensus 106 ~~~~~i~~~v~~sL~~Lg~--------------------------d~iDl~~lH~~~~~~~~---~~~~~~L~~L~~~G~ 156 (345)
..+.++.+.++.+|+.+|. ....+++|..|..-.+. ..+|+.+.++++.|+
T Consensus 670 ~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~ 749 (885)
T KOG0059|consen 670 LPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGK 749 (885)
T ss_pred CChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 4467888889999998883 45567777777655443 468999999999999
Q ss_pred cceEecCCCcHHHHHHHhcCCC
Q 019173 157 IKYIGLSEASPDTIRRAHAVHP 178 (345)
Q Consensus 157 ir~iGvS~~~~~~l~~~~~~~~ 178 (345)
++=+.+|+.++.+.+.....
T Consensus 750 --aiiLTSHsMeE~EaLCtR~a 769 (885)
T KOG0059|consen 750 --AIILTSHSMEEAEALCTRTA 769 (885)
T ss_pred --EEEEEcCCHHHHHHHhhhhh
Confidence 89999999999988887744
No 180
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=25.59 E-value=1.1e+02 Score=18.43 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHcCCChHHHH
Q 019173 250 SIYFRIENLAKKYKCTSAQLA 270 (345)
Q Consensus 250 ~~~~~l~~ia~~~g~s~~~~a 270 (345)
...+.|.++|++.|+|..++.
T Consensus 9 ~~~~~l~~~a~~~g~s~s~~i 29 (39)
T PF01402_consen 9 ELYERLDELAKELGRSRSELI 29 (39)
T ss_dssp HHHHHHHHHHHHHTSSHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHH
Confidence 455789999999999988754
No 181
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=25.57 E-value=1.6e+02 Score=25.27 Aligned_cols=68 Identities=18% Similarity=0.220 Sum_probs=42.1
Q ss_pred HHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCC-CcHHHHHHHhcCCCeeEEeccccc
Q 019173 117 ASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQLEWSL 188 (345)
Q Consensus 117 ~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~nl 188 (345)
..+..+|.||+=+.+. +.....+ ..+.+.++.+.-..+.+||-. .+.+.+.+......++++|+.-+-
T Consensus 13 ~~~~~~g~d~~Gfi~~--~~S~R~v--~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e 81 (197)
T PF00697_consen 13 RLAAELGADYLGFIFY--PKSPRYV--SPDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGDE 81 (197)
T ss_dssp HHHHHHTSSEEEEE----TTCTTB----HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SGG
T ss_pred HHHHHcCCCEEeeecC--CCCCCcc--CHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCCC
Confidence 4567899999888644 4322222 133445555555555788865 577888888888999999985543
No 182
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=25.51 E-value=5.6e+02 Score=23.92 Aligned_cols=102 Identities=16% Similarity=0.074 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHc-CCCeeecCCCCCC--CcHHHHHHHHHhc----CCCCCeEEEeccccccCCccccccCCCHHHHH
Q 019173 40 SEEDGISIIKHAFNK-GITFFDTADKYGP--YTNEILLGKALKM----LPRENIQVATKFGFAELGLDAVIVKGNPEYVR 112 (345)
Q Consensus 40 ~~~~a~~~l~~A~~~-Gi~~~DTA~~Yg~--g~sE~~lG~~l~~----~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~ 112 (345)
+.++..+++++..+. ||+-+=-+- |+ -.+...+-..++. .....+-|.|+.... .+..+.
T Consensus 120 ~~~e~~~~i~~i~~~~~I~~VilSG--GDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~-----------~p~rit 186 (321)
T TIGR03822 120 SPAELDAAFAYIADHPEIWEVILTG--GDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVA-----------DPARVT 186 (321)
T ss_pred CHHHHHHHHHHHHhCCCccEEEEeC--CCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCccc-----------ChhhcC
Confidence 567788888877655 787552110 10 0122333333333 123345566664321 233344
Q ss_pred HHHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCC
Q 019173 113 SCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGK 156 (345)
Q Consensus 113 ~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ 156 (345)
..+-+.|.+.|.. ..+-+|......-.+++.++++.|++.|.
T Consensus 187 ~ell~~L~~~g~~--v~i~l~~~h~~el~~~~~~ai~~L~~~Gi 228 (321)
T TIGR03822 187 PALIAALKTSGKT--VYVALHANHARELTAEARAACARLIDAGI 228 (321)
T ss_pred HHHHHHHHHcCCc--EEEEecCCChhhcCHHHHHHHHHHHHcCC
Confidence 5555667777732 35777876544445788999999999985
No 183
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=25.31 E-value=2.8e+02 Score=24.89 Aligned_cols=51 Identities=14% Similarity=0.040 Sum_probs=32.4
Q ss_pred cchhhHHHhhCCeEEeecCCCccccCCCCCCCCCCCCCccccCCCCCccchhhhHHHHHHHHHHHHHcCC
Q 019173 195 NEIVPLCRELGIGIVPYSPLGRGFFGGKAVVESVPPDSFLNFLPRFTGENLDRNRSIYFRIENLAKKYKC 264 (345)
Q Consensus 195 ~~~l~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~ 264 (345)
...++.|++.|+.++........ .. + .....++...+.+.++.++|+++|+
T Consensus 97 ~~~i~~a~~lG~~~v~~~~~~~~-----~~-------------~-~~~~~~~~~~~~l~~l~~~a~~~gv 147 (284)
T PRK13210 97 KKAIRLAQDLGIRTIQLAGYDVY-----YE-------------E-KSEETRQRFIEGLAWAVEQAAAAQV 147 (284)
T ss_pred HHHHHHHHHhCCCEEEECCcccc-----cc-------------c-ccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 68999999999999875321100 00 0 0112345566777888888998887
No 184
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=25.07 E-value=6.6e+02 Score=25.19 Aligned_cols=101 Identities=9% Similarity=0.066 Sum_probs=56.9
Q ss_pred HHHHHHHHHhc----CCCCCeEEEeccccccCCccccccCCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCCCH----
Q 019173 70 NEILLGKALKM----LPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPI---- 141 (345)
Q Consensus 70 sE~~lG~~l~~----~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~---- 141 (345)
+++.|-+++++ .+.+-++|.|-|.. +-|-..++...++++.+.++++.++.+......
T Consensus 69 ~~~~L~~aI~~~~~~~~P~~I~V~sTC~s--------------elIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~ 134 (511)
T TIGR01278 69 SQTRLVDTVRRVDDRFKPDLIVVTPSCTS--------------SLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAA 134 (511)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEeCCChH--------------HHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHH
Confidence 56777777766 23344566666543 223233333344444445889999998765432
Q ss_pred HHHHHHHHH-H----------HHcCCcceEecCCC------cHHHHHHHhcCCCeeEEec
Q 019173 142 EETIGEMKK-L----------VEEGKIKYIGLSEA------SPDTIRRAHAVHPITAVQL 184 (345)
Q Consensus 142 ~~~~~~L~~-L----------~~~G~ir~iGvS~~------~~~~l~~~~~~~~~~~~q~ 184 (345)
+.++..+-+ + .+.+.|.-||.++. +...+.++++...+.++.+
T Consensus 135 ~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~v 194 (511)
T TIGR01278 135 DRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNVV 194 (511)
T ss_pred HHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEEE
Confidence 223332221 1 12456888888752 4467777877766666543
No 185
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=24.96 E-value=5.8e+02 Score=23.88 Aligned_cols=94 Identities=17% Similarity=0.148 Sum_probs=49.9
Q ss_pred CCCeEEEeccccccCCccccccCCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCC----CCH--HHHHHHHHHHHHcCC
Q 019173 83 RENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTS----VPI--EETIGEMKKLVEEGK 156 (345)
Q Consensus 83 R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~----~~~--~~~~~~L~~L~~~G~ 156 (345)
.+++.|..|+...... ....+.+... .+-+.|+..|+|+|+ +|..... .+. ...++.+.++++.=.
T Consensus 219 G~d~~v~vri~~~~~~----~~g~~~~e~~-~ia~~Le~~gvd~ie---v~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~ 290 (336)
T cd02932 219 PEDKPLFVRISATDWV----EGGWDLEDSV-ELAKALKELGVDLID---VSSGGNSPAQKIPVGPGYQVPFAERIRQEAG 290 (336)
T ss_pred CCCceEEEEEcccccC----CCCCCHHHHH-HHHHHHHHcCCCEEE---ECCCCCCcccccCCCccccHHHHHHHHhhCC
Confidence 4567788887643110 0123344332 344556777766555 3321110 011 112355566666656
Q ss_pred cceEecCCC-cHHHHHHHhcCCCeeEEec
Q 019173 157 IKYIGLSEA-SPDTIRRAHAVHPITAVQL 184 (345)
Q Consensus 157 ir~iGvS~~-~~~~l~~~~~~~~~~~~q~ 184 (345)
|--++..+. +++..+++++....+.+++
T Consensus 291 iPVi~~G~i~t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 291 IPVIAVGLITDPEQAEAILESGRADLVAL 319 (336)
T ss_pred CCEEEeCCCCCHHHHHHHHHcCCCCeehh
Confidence 666776664 6777777777766676665
No 186
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=24.92 E-value=5.6e+02 Score=23.71 Aligned_cols=121 Identities=18% Similarity=0.123 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHcCCCeeecCCCCCCCcHHHH-HHHHHhc-----CCCCCeEEEeccccccCCccccccCCCHHHHHHHH
Q 019173 42 EDGISIIKHAFNKGITFFDTADKYGPYTNEIL-LGKALKM-----LPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCC 115 (345)
Q Consensus 42 ~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~-lG~~l~~-----~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v 115 (345)
+++.+.+..++..|.+.| .+|.|.|-.+ .-.+..- .+++.+....-.+...- .......+.-....
T Consensus 45 ~~a~~~~~~~l~~ggrl~----~~GaG~Sg~la~~dA~e~~~tf~~~~~~~~~~iagg~~a~----~~a~~~~ed~~~~~ 116 (296)
T PRK12570 45 AQAVDKIVAAFKKGGRLI----YMGAGTSGRLGVLDASECPPTFSVSPEMVIGLIAGGPEAM----FTAVEGAEDDPELG 116 (296)
T ss_pred HHHHHHHHHHHHcCCeEE----EECCchhHHHHHHHHHhCcchhcCCcccceeeeecCchHh----hhcccccCCcHHHH
Confidence 344555666777888876 5677766543 2122211 23343322222221100 00000011123334
Q ss_pred HHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHH
Q 019173 116 EASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRA 173 (345)
Q Consensus 116 ~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~ 173 (345)
.+.+...+...=|+++.-...... .+++.+++.+++.| ++-|++++.+...+.+.
T Consensus 117 ~~~l~a~~l~~~DvvI~IS~SG~T--~~vi~al~~Ak~~G-a~~IaIT~~~~s~La~~ 171 (296)
T PRK12570 117 AQDLKAIGLTADDVVVGIAASGRT--PYVIGALEYAKQIG-ATTIALSCNPDSPIAKI 171 (296)
T ss_pred HHHHHHcCCCCCCEEEEEeCCCCC--HHHHHHHHHHHHCC-CeEEEEECCCCChhHHh
Confidence 445555665666999887765443 45899999999998 77799998866666544
No 187
>PRK07328 histidinol-phosphatase; Provisional
Probab=24.84 E-value=5.1e+02 Score=23.29 Aligned_cols=111 Identities=14% Similarity=0.145 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHcCCCeeecCCCCCC------------CcHHHHHHHHHhcC--CCCCe-EEEeccccccCCccccccCCC
Q 019173 43 DGISIIKHAFNKGITFFDTADKYGP------------YTNEILLGKALKML--PRENI-QVATKFGFAELGLDAVIVKGN 107 (345)
Q Consensus 43 ~a~~~l~~A~~~Gi~~~DTA~~Yg~------------g~sE~~lG~~l~~~--~R~~~-~i~tK~~~~~~~~~~~~~~~~ 107 (345)
...+++++|.+.|+..+=.++|.-. +-+..-+-..+++. .++++ -|--++|... +.-
T Consensus 19 ~~ee~v~~A~~~Gl~~i~~TdH~~~~~~~~~~~~~~~~~~~~~~~~y~~~i~~l~~~y~~i~Il~GiE~--------~~~ 90 (269)
T PRK07328 19 TPEEYVQAARRAGLKEIGFTDHLPMYFLPPEWRDPGLAMRLEELPFYVSEVERLRARFPDLYVRLGIEA--------DYH 90 (269)
T ss_pred CHHHHHHHHHHCCCCEEEEecCCCCCCcCcccccccccccHHHHHHHHHHHHHHHHHcCCCeEEEEEEe--------ccc
Confidence 4678899999999998776665321 01112233333321 11111 1333334321 111
Q ss_pred HHHHHHHHHHHHhhcCCCcccEEEeccCCCC-------------CCHHHH----HHHHHHHHHcCCcceEecC
Q 019173 108 PEYVRSCCEASLKRLDVEYIDLYYQHRVDTS-------------VPIEET----IGEMKKLVEEGKIKYIGLS 163 (345)
Q Consensus 108 ~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~-------------~~~~~~----~~~L~~L~~~G~ir~iGvS 163 (345)
+ .....+++.|++...||+ |.-+|..+.. .+.+++ ++.+.++++.|.+.-+|=-
T Consensus 91 ~-~~~~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH~ 161 (269)
T PRK07328 91 P-GTEEFLERLLEAYPFDYV-IGSVHYLGAWGFDNPDFVAEYEERDLDELYRRYFALVEQAARSGLFDIIGHP 161 (269)
T ss_pred C-CcHHHHHHHHHhCCCCeE-EEEEeecCCcCCCChhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCEeeCc
Confidence 1 234556667777766777 7778986421 112233 3357778888888777643
No 188
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=24.58 E-value=1.5e+02 Score=26.57 Aligned_cols=97 Identities=13% Similarity=0.126 Sum_probs=57.0
Q ss_pred HHHHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHH-HHHcCCcceEecCCC-cH----HHHH---HHhcCCCeeEE
Q 019173 112 RSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKK-LVEEGKIKYIGLSEA-SP----DTIR---RAHAVHPITAV 182 (345)
Q Consensus 112 ~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~-L~~~G~ir~iGvS~~-~~----~~l~---~~~~~~~~~~~ 182 (345)
-+.+++.|+-+| +|||++=+-|-......++.++..-+ +++-|.--+.| .++ .. ..++ +.+....|+++
T Consensus 11 ~~~~~d~Le~~g-~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~G-Gtl~E~~~~q~~~~~Yl~~~k~lGf~~I 88 (237)
T TIGR03849 11 PKFVEDYLKVCG-DYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPG-GTLFEIAHSKGKFDEYLNECDELGFEAV 88 (237)
T ss_pred HHHHHHHHHHhh-hheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCC-ccHHHHHHHhhhHHHHHHHHHHcCCCEE
Confidence 367888999999 99999999886655444445544444 44455544445 211 11 1122 12223567777
Q ss_pred eccccccccccc--cchhhHHHhhCCeEEe
Q 019173 183 QLEWSLWTRDIE--NEIVPLCRELGIGIVP 210 (345)
Q Consensus 183 q~~~nl~~~~~~--~~~l~~~~~~gi~v~a 210 (345)
.+.=..+.-..+ ..+++.++++|..+..
T Consensus 89 EiS~G~~~i~~~~~~rlI~~~~~~g~~v~~ 118 (237)
T TIGR03849 89 EISDGSMEISLEERCNLIERAKDNGFMVLS 118 (237)
T ss_pred EEcCCccCCCHHHHHHHHHHHHhCCCeEec
Confidence 665444443222 5778888888877774
No 189
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=24.39 E-value=55 Score=24.87 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHhCCCCeEeecCCCCHHHHHHHHhhcC-------CCCCHHHHHHHHhhCC
Q 019173 249 RSIYFRIENLAKKYKCTSAQLALAWVLEQGDDVVPIPGTTKIKNLEDNIVSLT-------VKLTNKDLKEISDAVP 317 (345)
Q Consensus 249 ~~~~~~l~~ia~~~g~s~~~~al~~~l~~~~v~~vivg~~~~~~l~~nl~a~~-------~~L~~~~~~~i~~~~~ 317 (345)
...++++..+|+..|..+.....+- +.+|. ....+|..+.+.|.+.++..+ -+||+.+...|++.+.
T Consensus 7 ~~~l~El~~L~~t~g~~vv~~~~q~-~~~~~-p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~ 80 (95)
T PF13167_consen 7 EESLEELEELAETAGYEVVGTVVQK-RRKPD-PKTYIGSGKVEEIKELIEELDADLVVFDNELSPSQQRNLEKALG 80 (95)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEec-CCCCC-cceeechhHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHC
Confidence 4556789999998887765422221 23333 467899999999999876654 3799999999999984
No 190
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=24.38 E-value=6.1e+02 Score=24.08 Aligned_cols=119 Identities=13% Similarity=0.188 Sum_probs=74.5
Q ss_pred CCHHHHHHHHHHHHHc---CCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeccccccCCccccccCCCHHHHHHHH
Q 019173 39 VSEEDGISIIKHAFNK---GITFFDTADKYGPYTNEILLGKALKMLPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCC 115 (345)
Q Consensus 39 ~~~~~a~~~l~~A~~~---Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v 115 (345)
++.++..+++....+. =+-.+|..+..+... ..+-+.+. ...-++|.+|+-..+ .....+.+.+.+
T Consensus 48 ~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~--~~l~~~~~--~~piilV~NK~DLl~-------k~~~~~~~~~~l 116 (360)
T TIGR03597 48 LNDDDFLNLLNSLGDSNALIVYVVDIFDFEGSLI--PELKRFVG--GNPVLLVGNKIDLLP-------KSVNLSKIKEWM 116 (360)
T ss_pred CCHHHHHHHHhhcccCCcEEEEEEECcCCCCCcc--HHHHHHhC--CCCEEEEEEchhhCC-------CCCCHHHHHHHH
Confidence 4566677776666542 233567655554321 22223332 455678999986432 123456677777
Q ss_pred HHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHH
Q 019173 116 EASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDT 169 (345)
Q Consensus 116 ~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~ 169 (345)
++.++..|....+++.+-.- ....++++++.+.++.+.+.|-.+|.+|..=+.
T Consensus 117 ~~~~k~~g~~~~~i~~vSAk-~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKSt 169 (360)
T TIGR03597 117 KKRAKELGLKPVDIILVSAK-KGNGIDELLDKIKKARNKKDVYVVGVTNVGKSS 169 (360)
T ss_pred HHHHHHcCCCcCcEEEecCC-CCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHH
Confidence 77777887654566666443 345688899999888777788889999976543
No 191
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=24.28 E-value=4.9e+02 Score=23.30 Aligned_cols=146 Identities=17% Similarity=0.174 Sum_probs=83.0
Q ss_pred HHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhcC--CCC--CeEEEeccccccCCccccccCCCHHHHHHHHHHHH
Q 019173 44 GISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKML--PRE--NIQVATKFGFAELGLDAVIVKGNPEYVRSCCEASL 119 (345)
Q Consensus 44 a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~--~R~--~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL 119 (345)
....+..|-+.|. ++. . ...++.++++.. .+. .+.++..+.+. .+....+...+.+.+
T Consensus 51 p~~Fi~~aE~~gl--i~~---l----~~~v~~~a~~~~~~~~~~~~~~l~iNis~~---------~l~~~~~~~~l~~~l 112 (256)
T COG2200 51 PGEFIPLAEETGL--IVE---L----GRWVLEEACRQLRTWPRAGPLRLAVNLSPV---------QLRSPGLVDLLLRLL 112 (256)
T ss_pred HHHHHHHHHHcCC--HHH---H----HHHHHHHHHHHHHhhhhcCCceEEEEcCHH---------HhCCchHHHHHHHHH
Confidence 3455666666675 111 1 355666666551 122 36666666532 112344556777888
Q ss_pred hhcCCCcc--cEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcH--HHHHHHhcCCCeeEEeccccccccc---
Q 019173 120 KRLDVEYI--DLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASP--DTIRRAHAVHPITAVQLEWSLWTRD--- 192 (345)
Q Consensus 120 ~~Lg~d~i--Dl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~--~~l~~~~~~~~~~~~q~~~nl~~~~--- 192 (345)
++.+++.- .+=..-.. .....+.+...+..|++.| | .|.+..|.. .-+..+. ..+|+++-+.-+....-
T Consensus 113 ~~~~~~~~~l~lEitE~~-~~~~~~~~~~~l~~L~~~G-~-~ialDDFGtG~ssl~~L~-~l~~d~iKID~~fi~~i~~~ 188 (256)
T COG2200 113 ARLGLPPHRLVLEITESA-LIDDLDTALALLRQLRELG-V-RIALDDFGTGYSSLSYLK-RLPPDILKIDRSFVRDLETD 188 (256)
T ss_pred HHhCCCcceEEEEEeCch-hhcCHHHHHHHHHHHHHCC-C-eEEEECCCCCHHHHHHHh-hCCCCeEEECHHHHhhcccC
Confidence 88876542 22221111 1123456788999999999 3 366666543 3343333 35677777765554421
Q ss_pred -----cccchhhHHHhhCCeEEee
Q 019173 193 -----IENEIVPLCRELGIGIVPY 211 (345)
Q Consensus 193 -----~~~~~l~~~~~~gi~v~a~ 211 (345)
.-..++..|++.|+.|++-
T Consensus 189 ~~~~~iv~~iv~la~~l~~~vvaE 212 (256)
T COG2200 189 ARDQAIVRAIVALAHKLGLTVVAE 212 (256)
T ss_pred cchHHHHHHHHHHHHHCCCEEEEe
Confidence 1268899999999999984
No 192
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=24.12 E-value=6.3e+02 Score=24.05 Aligned_cols=25 Identities=12% Similarity=0.239 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeeecCC
Q 019173 39 VSEEDGISIIKHAFNKGITFFDTAD 63 (345)
Q Consensus 39 ~~~~~a~~~l~~A~~~Gi~~~DTA~ 63 (345)
.+.++..++++...+.||..|+...
T Consensus 19 ~s~~~k~~ia~~L~~~Gv~~IEvG~ 43 (363)
T TIGR02090 19 LTVEQKVEIARKLDELGVDVIEAGF 43 (363)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 3788999999999999999999763
No 193
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=24.03 E-value=2.3e+02 Score=25.00 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=24.2
Q ss_pred cccccccccccchhhHHHhhCCeEEee
Q 019173 185 EWSLWTRDIENEIVPLCRELGIGIVPY 211 (345)
Q Consensus 185 ~~nl~~~~~~~~~l~~~~~~gi~v~a~ 211 (345)
+||++++....++.+..++.|+.|+..
T Consensus 192 pY~~~D~~in~~I~~~l~~~G~~vit~ 218 (221)
T PF09989_consen 192 PYNIYDPFINMGIPDKLRSLGVPVITE 218 (221)
T ss_pred CCcCCCcccCCchHHHHHHCCCeeeCc
Confidence 999999888889999999999999864
No 194
>PF11590 DNAPolymera_Pol: DNA polymerase catalytic subunit Pol; InterPro: IPR021639 This family of proteins represents the catalytic subunit, Pol, of the Herpes simplex virus DNA polymerase. Pol binds UL42, making up the DNA polymerase. UL42 is a processivity subunit which binds to the C-terminal of Pol in a similar way that the cell cycle regulator p21 binds to PCNA []. ; GO: 0003887 DNA-directed DNA polymerase activity, 0004523 ribonuclease H activity; PDB: 1DML_H.
Probab=24.01 E-value=70 Score=20.06 Aligned_cols=33 Identities=24% Similarity=0.475 Sum_probs=19.0
Q ss_pred cccccccccccCCCCCCCCCCHHHHHHHHHHHHH
Q 019173 20 EVSKLGFGCMSLSGGYNSPVSEEDGISIIKHAFN 53 (345)
Q Consensus 20 ~vs~lg~G~~~~g~~~~~~~~~~~a~~~l~~A~~ 53 (345)
+++.-||.+...|...... .++|..+-|..|++
T Consensus 6 Rl~~AgF~~i~~g~g~~~~-~eeEt~qkL~~AF~ 38 (41)
T PF11590_consen 6 RLRSAGFATIGSGAGLPSS-EEEETRQKLRRAFD 38 (41)
T ss_dssp HHHHTT-EEECTTS-------HHHHHHHHHHHHH
T ss_pred HHHHHhHHHhccCccccch-hhHHHHHHHHHHHH
Confidence 3455667666665433333 68889999999986
No 195
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=23.80 E-value=4.8e+02 Score=22.54 Aligned_cols=132 Identities=15% Similarity=0.081 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHHcCCCeeec----------CCCCCCC--cHHHHHHHHHhcCCCCC--eEEEeccccccCCccccccC
Q 019173 40 SEEDGISIIKHAFNKGITFFDT----------ADKYGPY--TNEILLGKALKMLPREN--IQVATKFGFAELGLDAVIVK 105 (345)
Q Consensus 40 ~~~~a~~~l~~A~~~Gi~~~DT----------A~~Yg~g--~sE~~lG~~l~~~~R~~--~~i~tK~~~~~~~~~~~~~~ 105 (345)
+.++..+..+.+.+.|+..||- .+.||.. ..-+.+-+.++. -|+. +-|+.|+...+ .
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~-v~~~~~~~v~vk~r~~~--------~ 135 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRA-VREAVPIPVTVKIRLGW--------D 135 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHH-HHHhcCCCEEEEEeecc--------C
Confidence 6788888889999999999984 2346532 123444444444 1211 44666654221 0
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCC--CHHHHHHHHHHHHHcCCcceEecCCC-cHHHHHHHhcCCCeeEE
Q 019173 106 GNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSV--PIEETIGEMKKLVEEGKIKYIGLSEA-SPDTIRRAHAVHPITAV 182 (345)
Q Consensus 106 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~--~~~~~~~~L~~L~~~G~ir~iGvS~~-~~~~l~~~~~~~~~~~~ 182 (345)
.. +.. ..+-+.|+..|+ |.+.+|...... .....|+.+.++++.-.+--++.... +.+.+.++++....+.+
T Consensus 136 ~~-~~~-~~~~~~l~~~Gv---d~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~~~~l~~~gad~V 210 (231)
T cd02801 136 DE-EET-LELAKALEDAGA---SALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIANGDIFSLEDALRCLEQTGVDGV 210 (231)
T ss_pred Cc-hHH-HHHHHHHHHhCC---CEEEECCCCHHHcCCCCCCHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHhcCCCEE
Confidence 00 122 233344666674 555667653211 00113555666666656665655553 56677777666556666
Q ss_pred ecc
Q 019173 183 QLE 185 (345)
Q Consensus 183 q~~ 185 (345)
++-
T Consensus 211 ~ig 213 (231)
T cd02801 211 MIG 213 (231)
T ss_pred EEc
Confidence 653
No 196
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=23.70 E-value=4.6e+02 Score=22.36 Aligned_cols=119 Identities=10% Similarity=0.032 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhc-------CCCCCeEEEeccccccCCccccccCCCHHHHHH
Q 019173 41 EEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKM-------LPRENIQVATKFGFAELGLDAVIVKGNPEYVRS 113 (345)
Q Consensus 41 ~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~-------~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~ 113 (345)
-+++.+.+..++..|-+.+ .||.|.| -.+++.+.. ..|-.+.+..-..... ...-........
T Consensus 30 i~~a~~~i~~al~~~~rI~----i~G~G~S-~~~A~~~a~~l~~~~~~~r~g~~~~~~~d~~~-----~~~~~~d~~~~~ 99 (192)
T PRK00414 30 IQRAAVLIADSFKAGGKVL----SCGNGGS-HCDAMHFAEELTGRYRENRPGYPAIAISDVSH-----LSCVSNDFGYDY 99 (192)
T ss_pred HHHHHHHHHHHHHCCCEEE----EEeCcHH-HHHHHHHHHHhcccccCCCCCceEEecCcHHH-----HhhhhccCCHHH
Confidence 4678888888888886655 6777766 444444431 1122221111100000 000000011222
Q ss_pred HHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHH
Q 019173 114 CCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRA 173 (345)
Q Consensus 114 ~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~ 173 (345)
-+.+.+..+. +.=|++.+-+... ...++.++++.+++.| ++-|++++.....+.+.
T Consensus 100 ~~~~~~~~~~-~~~Dv~I~iS~SG--~t~~~i~~~~~ak~~g-~~iI~iT~~~~s~l~~~ 155 (192)
T PRK00414 100 VFSRYVEAVG-REGDVLLGISTSG--NSGNIIKAIEAARAKG-MKVITLTGKDGGKMAGL 155 (192)
T ss_pred HHHHHHHHhC-CCCCEEEEEeCCC--CCHHHHHHHHHHHHCC-CeEEEEeCCCCChhHHh
Confidence 3334444443 5568888755443 3467899999999997 88999999876666554
No 197
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=23.57 E-value=5.4e+02 Score=23.04 Aligned_cols=98 Identities=16% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHH-cCCcceEecCCCcHHHHHHHhcCCCeeEEeccccccc
Q 019173 112 RSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVE-EGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWT 190 (345)
Q Consensus 112 ~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~-~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~nl~~ 190 (345)
+..+-+.|.++|+++|.+- ....-+.-++.++.+.+ ...++..+.+..+.+.++.+.+. .++.+.+-.+.-+
T Consensus 22 k~~i~~~L~~~Gv~~iE~g------~p~~~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~-g~~~i~i~~~~s~ 94 (259)
T cd07939 22 KLAIARALDEAGVDEIEVG------IPAMGEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRC-GVTAVHISIPVSD 94 (259)
T ss_pred HHHHHHHHHHcCCCEEEEe------cCCCCHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhC-CcCEEEEEEecCH
Q ss_pred c--------------ccccchhhHHHhhCCeEEeecCCCc
Q 019173 191 R--------------DIENEIVPLCRELGIGIVPYSPLGR 216 (345)
Q Consensus 191 ~--------------~~~~~~l~~~~~~gi~v~a~~pl~~ 216 (345)
. +.-.+.+++|+++|+.+...-+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~ 134 (259)
T cd07939 95 IHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDAS 134 (259)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCC
No 198
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=23.48 E-value=6.7e+02 Score=24.51 Aligned_cols=96 Identities=10% Similarity=0.064 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC--CcceEecCC--CcHHHHHHHhcCCCeeE
Q 019173 106 GNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGLSE--ASPDTIRRAHAVHPITA 181 (345)
Q Consensus 106 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G--~ir~iGvS~--~~~~~l~~~~~~~~~~~ 181 (345)
++++...+-+++.++++ ++.++-.|-+..+ ++.+.+|.+.- .+.-+|=-. .+...+.++++....++
T Consensus 262 ~s~~eai~~~~~lle~~-----~i~~iEdPl~~~D----~~~~~~L~~~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~ 332 (425)
T TIGR01060 262 LTSEEMIEYYKELVEKY-----PIVSIEDGLSEED----WEGWAELTKELGDKVQIVGDDLFVTNTEILREGIEMGVANS 332 (425)
T ss_pred cCHHHHHHHHHHHHhcC-----CcEEEEcCCCccc----HHHHHHHHHhcCCCCeEEeCCCcccCHHHHHHHHHhCCCCE
Confidence 35555555555555444 5677777655443 45556666653 454333332 25888999988888889
Q ss_pred Eecccccccc-ccccchhhHHHhhCCeEEe
Q 019173 182 VQLEWSLWTR-DIENEIVPLCRELGIGIVP 210 (345)
Q Consensus 182 ~q~~~nl~~~-~~~~~~l~~~~~~gi~v~a 210 (345)
+|+..+-.-. ..-.++...|+.+|+.++.
T Consensus 333 v~ik~~~iGGItea~~ia~lA~~~Gi~~vv 362 (425)
T TIGR01060 333 ILIKPNQIGTLTETLDAVELAKKAGYTAVI 362 (425)
T ss_pred EEecccccCCHHHHHHHHHHHHHcCCcEEE
Confidence 9887774332 1126889999999998554
No 199
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=23.35 E-value=5.2e+02 Score=22.83 Aligned_cols=98 Identities=14% Similarity=0.263 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCc------ceEecCCCcH-HHHHHHhcCCCeeEE
Q 019173 110 YVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKI------KYIGLSEASP-DTIRRAHAVHPITAV 182 (345)
Q Consensus 110 ~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~i------r~iGvS~~~~-~~l~~~~~~~~~~~~ 182 (345)
.....++..-+-.....|+-+++-..+.....+|-+...++|.+.|.= .+-|+++.+. -+..+......|.++
T Consensus 77 yy~~Ri~aA~~ly~~gKV~~LLlSGDN~~~sYnEp~tM~kdL~~~GVp~~~i~lDyAGFrTLDSvvRA~kVF~~~~ftII 156 (235)
T COG2949 77 YYTYRIDAAIALYKAGKVNYLLLSGDNATVSYNEPRTMRKDLIAAGVPAKNIFLDYAGFRTLDSVVRARKVFGTNDFTII 156 (235)
T ss_pred hHHHHHHHHHHHHhcCCeeEEEEecCCCcccccchHHHHHHHHHcCCCHHHeeecccCccHHHHHHHHHHHcCcCcEEEE
Confidence 455666666677777889999998888888889999999999999963 3446666432 233334444556655
Q ss_pred eccccccccccccchhhHHHhhCCeEEeecC
Q 019173 183 QLEWSLWTRDIENEIVPLCRELGIGIVPYSP 213 (345)
Q Consensus 183 q~~~nl~~~~~~~~~l~~~~~~gi~v~a~~p 213 (345)
--+||. +..+=.|+.+||.-+++..
T Consensus 157 tQ~FHc------eRAlfiA~~~gIdAic~~a 181 (235)
T COG2949 157 TQRFHC------ERALFIARQMGIDAICFAA 181 (235)
T ss_pred eccccc------HHHHHHHHHhCCceEEecC
Confidence 445553 4678899999999887543
No 200
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=23.25 E-value=4.3e+02 Score=21.85 Aligned_cols=95 Identities=17% Similarity=0.068 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhcCCCC-CeEEEeccccccCCccccccCCCHHHHHHHHHHH
Q 019173 40 SEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLPRE-NIQVATKFGFAELGLDAVIVKGNPEYVRSCCEAS 118 (345)
Q Consensus 40 ~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~R~-~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~s 118 (345)
+.+...++++.+++.|++-|-+.. .++-.+.+. ..+ ++-|..+++.... ....+...+.+++.
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g--------~~i~~~~~~-~~~~~~~v~~~v~~~~~-------~~~~~~~~~~a~~a 74 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP--------GYVRLAADA-LAGSDVPVIVVVGFPTG-------LTTTEVKVAEVEEA 74 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH--------HHHHHHHHH-hCCCCCeEEEEecCCCC-------CCcHHHHHHHHHHH
Confidence 688899999999999999876653 334443333 334 5667777764311 01134444555444
Q ss_pred HhhcCCCcccEEEeccCC---CCCCHHHHHHHHHHHHHc
Q 019173 119 LKRLDVEYIDLYYQHRVD---TSVPIEETIGEMKKLVEE 154 (345)
Q Consensus 119 L~~Lg~d~iDl~~lH~~~---~~~~~~~~~~~L~~L~~~ 154 (345)
.++|.|. +.++-|. ...+.+++.+.+.++.+.
T Consensus 75 -~~~Gad~---i~v~~~~~~~~~~~~~~~~~~~~~i~~~ 109 (201)
T cd00945 75 -IDLGADE---IDVVINIGSLKEGDWEEVLEEIAAVVEA 109 (201)
T ss_pred -HHcCCCE---EEEeccHHHHhCCCHHHHHHHHHHHHHH
Confidence 4557544 4444332 111135555555555554
No 201
>PRK12928 lipoyl synthase; Provisional
Probab=23.10 E-value=5.5e+02 Score=23.65 Aligned_cols=161 Identities=13% Similarity=0.188 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeeecCCCCC---CCcHHHHHHHHHhcCCCCCeEEEeccccccCCccccccCCCHHHHHHHH
Q 019173 39 VSEEDGISIIKHAFNKGITFFDTADKYG---PYTNEILLGKALKMLPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCC 115 (345)
Q Consensus 39 ~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg---~g~sE~~lG~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v 115 (345)
.+.++..+.++.+.+.|++.+--..... ....-..+-+.++......-.+-.++. +++.+.+ .
T Consensus 87 ~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~~I~~l-------------tp~~~~~-~ 152 (290)
T PRK12928 87 LDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGTGIEVL-------------TPDFWGG-Q 152 (290)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCCEEEEe-------------ccccccC-C
Q ss_pred HHHHhhcCCCcccEEEe---------ccCCCCCCHHHHHHHHHHHHHcC---CcceE---ecCCCcHHHHHHHhcC---C
Q 019173 116 EASLKRLDVEYIDLYYQ---------HRVDTSVPIEETIGEMKKLVEEG---KIKYI---GLSEASPDTIRRAHAV---H 177 (345)
Q Consensus 116 ~~sL~~Lg~d~iDl~~l---------H~~~~~~~~~~~~~~L~~L~~~G---~ir~i---GvS~~~~~~l~~~~~~---~ 177 (345)
.+.|++|--...+++.. ....+....++.++.++.+++.| .++.- |+ +-+.+.+...+.. .
T Consensus 153 ~e~L~~l~~Ag~~i~~hnlEt~~~vl~~m~r~~t~e~~le~l~~ak~~gp~i~~~s~iIvG~-GET~ed~~etl~~Lrel 231 (290)
T PRK12928 153 RERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSLDLLARAKELAPDIPTKSGLMLGL-GETEDEVIETLRDLRAV 231 (290)
T ss_pred HHHHHHHHHcCchhhcccCcCcHHHHHHhCCCCCHHHHHHHHHHHHHhCCCceecccEEEeC-CCCHHHHHHHHHHHHhc
Q ss_pred CeeEEec-cccc-----------cccccccchhhHHHhhCCeEEeecCC
Q 019173 178 PITAVQL-EWSL-----------WTRDIENEIVPLCRELGIGIVPYSPL 214 (345)
Q Consensus 178 ~~~~~q~-~~nl-----------~~~~~~~~~l~~~~~~gi~v~a~~pl 214 (345)
+++.+.+ +|.. ..+.....+.+.+.+.|...++-+||
T Consensus 232 ~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~~~~~g~~~~~~~p~ 280 (290)
T PRK12928 232 GCDRLTIGQYLRPSLAHLPVQRYWTPEEFEALGQIARELGFSHVRSGPL 280 (290)
T ss_pred CCCEEEEEcCCCCCccCCceeeccCHHHHHHHHHHHHHcCCceeEecCc
No 202
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.85 E-value=3.5e+02 Score=26.01 Aligned_cols=88 Identities=14% Similarity=0.154 Sum_probs=56.2
Q ss_pred EEEeccCCC------------CCCHHHHHHHHHH-HHHcC---CcceEecCC--CcH---HHHHHHhcCCCeeEEecccc
Q 019173 129 LYYQHRVDT------------SVPIEETIGEMKK-LVEEG---KIKYIGLSE--ASP---DTIRRAHAVHPITAVQLEWS 187 (345)
Q Consensus 129 l~~lH~~~~------------~~~~~~~~~~L~~-L~~~G---~ir~iGvS~--~~~---~~l~~~~~~~~~~~~q~~~n 187 (345)
.+-||.+++ ..+++++++++.+ +.+.| +|+++=+.+ .+. ..+.+++...+..++-++||
T Consensus 237 aiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~GvNDs~eda~~L~~~l~~~~~~VnlIpyn 316 (368)
T PRK14456 237 AVSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEGINDSPEDARKLIRFASRFFCKINLIDYN 316 (368)
T ss_pred EEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcCCCCCHHHHHHHHHHHhcCCCeeEEeeec
Confidence 466788743 2356888888875 45556 344554443 343 34444554455678888999
Q ss_pred ccccccc--------cchhhHHHhhCCeEEeecCCCc
Q 019173 188 LWTRDIE--------NEIVPLCRELGIGIVPYSPLGR 216 (345)
Q Consensus 188 l~~~~~~--------~~~l~~~~~~gi~v~a~~pl~~ 216 (345)
.+..... ....+..+++|+.|......+.
T Consensus 317 ~~~~~~~~~ps~e~i~~F~~~L~~~Gi~vtvR~~~G~ 353 (368)
T PRK14456 317 SIVNIKFEPVCSSTRERFRDRLLDAGLQVTVRKSYGT 353 (368)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHCCCcEEeeCCCCc
Confidence 8765311 4566677889999999888764
No 203
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=22.76 E-value=3.9e+02 Score=23.96 Aligned_cols=61 Identities=16% Similarity=0.141 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHcCCcceEe-cCCCcHHHHHHHhcC----CCeeEEeccccccccccccchhhHHHhh
Q 019173 141 IEETIGEMKKLVEEGKIKYIG-LSEASPDTIRRAHAV----HPITAVQLEWSLWTRDIENEIVPLCREL 204 (345)
Q Consensus 141 ~~~~~~~L~~L~~~G~ir~iG-vS~~~~~~l~~~~~~----~~~~~~q~~~nl~~~~~~~~~l~~~~~~ 204 (345)
.++..+.+++|+++| + .+| +|||+.. +..+... .-||.+-..|-.-...|+.+++.+|-++
T Consensus 115 ~~~~~~~lq~lR~~g-~-~l~iisN~d~r-~~~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~al~~ 180 (237)
T KOG3085|consen 115 LDGMQELLQKLRKKG-T-ILGIISNFDDR-LRLLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQLALER 180 (237)
T ss_pred ccHHHHHHHHHHhCC-e-EEEEecCCcHH-HHHHhhccCHHHhhhhhhhhhhhccCCCChHHHHHHHHH
Confidence 455669999999999 3 355 4666543 3332222 3355555555555555666777777654
No 204
>PF01904 DUF72: Protein of unknown function DUF72; InterPro: IPR002763 The function of this family is unknown. Aquifex aeolicus has two copies of this protein. A probable aspartyl-tRNA synthetase from Escherichia coli [] belongs to this group.; PDB: 1VPY_A 1ZTV_A 1VPQ_A.
Probab=22.76 E-value=5.3e+02 Score=22.70 Aligned_cols=135 Identities=13% Similarity=0.085 Sum_probs=72.5
Q ss_pred HHHHHHcCCCeeec-CCCCCCCcHHHHHHHHHhcCCCCCeEEEeccccccCCccccccCCCHHHHHHHHHHHHhhcCCCc
Q 019173 48 IKHAFNKGITFFDT-ADKYGPYTNEILLGKALKMLPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEASLKRLDVEY 126 (345)
Q Consensus 48 l~~A~~~Gi~~~DT-A~~Yg~g~sE~~lG~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~ 126 (345)
+....+. ++.++. +..|+. -+++.+.+|.+. -.+++..+-|+.-.-. +...-....+.+.+.+-+.++-|| +.
T Consensus 12 L~~Ya~~-F~~VEvn~TFY~~-P~~~t~~~W~~~-~p~~F~F~vK~~~~iT--H~~~l~~~~~~~~~~F~~~~~~L~-~k 85 (230)
T PF01904_consen 12 LAYYARH-FNTVEVNSTFYRI-PSPETVARWREQ-TPEGFRFSVKAPQLIT--HERRLRDCAEELWRRFLEALEPLG-EK 85 (230)
T ss_dssp HHHHCCT--SEEEE-HHCCSS-S-HHHHHHHHCT-S-TT-EEEEE--CCCC--CCCHCGSSHHHHHHHHHHHCHHHH-T-
T ss_pred HHHHHHh-CCeEEECcccCCC-CCHHHHHHHHhh-CCCCeEEEEeccHHhe--ecccccccHHHHHHHHHHHHHHHh-hc
Confidence 4444443 566554 446753 378899999887 6689999999863321 000011235666566666999999 99
Q ss_pred ccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcCCCeeEEeccccccccccccchhhHHHhhCC
Q 019173 127 IDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWTRDIENEIVPLCRELGI 206 (345)
Q Consensus 127 iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~nl~~~~~~~~~l~~~~~~gi 206 (345)
+..+++.-|..-..-.+.++.|..+.+.=. ..-.-++.++.--+.. .++++.++++|+
T Consensus 86 lg~iL~Q~Ppsf~~~~~~~~~l~~~l~~~~-------------------~~~~~avE~R~~sW~~---~~~~~~l~~~~~ 143 (230)
T PF01904_consen 86 LGPILFQFPPSFRFTPENLERLDAFLDRLP-------------------RGFRYAVEFRHPSWFT---EEVFELLREHGV 143 (230)
T ss_dssp EEEEEEE--TT--S-HHHHHHHHHHHHHTT--------------------TS-EEEE--BGGGGC---HHHHHHHHHTT-
T ss_pred ceEEEEEcCCCcCCCHHHHHHHHHHHhhcc-------------------cccceEEecCCcchhh---HHHHHHHHHcCC
Confidence 999999988754444556666666655422 1112333443322222 578888999998
Q ss_pred eEEe
Q 019173 207 GIVP 210 (345)
Q Consensus 207 ~v~a 210 (345)
..+.
T Consensus 144 ~~v~ 147 (230)
T PF01904_consen 144 ALVI 147 (230)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8664
No 205
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=22.70 E-value=6.4e+02 Score=23.63 Aligned_cols=132 Identities=17% Similarity=0.077 Sum_probs=86.1
Q ss_pred CHHHHHHHHHHHHHcCCCeeec----------CCCCCCC--cHHHHHHHHHhc---CCCCCeEEEeccccccCCcccccc
Q 019173 40 SEEDGISIIKHAFNKGITFFDT----------ADKYGPY--TNEILLGKALKM---LPRENIQVATKFGFAELGLDAVIV 104 (345)
Q Consensus 40 ~~~~a~~~l~~A~~~Gi~~~DT----------A~~Yg~g--~sE~~lG~~l~~---~~R~~~~i~tK~~~~~~~~~~~~~ 104 (345)
+++...+.-+.+.+.|+..||- ...+|.. +...++.+.++. ... ++-|+.|+-....+.
T Consensus 77 dp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~-~iPVTVKiRlG~d~~----- 150 (323)
T COG0042 77 DPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVG-DIPVTVKIRLGWDDD----- 150 (323)
T ss_pred CHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhC-CCCeEEEEecccCcc-----
Confidence 6788899999999999999993 2233322 456777777765 112 678888986443211
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCCCH--HHHHHHHHHHHHcCC-cceEecCC-CcHHHHHHHhcCCCee
Q 019173 105 KGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPI--EETIGEMKKLVEEGK-IKYIGLSE-ASPDTIRRAHAVHPIT 180 (345)
Q Consensus 105 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~--~~~~~~L~~L~~~G~-ir~iGvS~-~~~~~l~~~~~~~~~~ 180 (345)
+.....+.+.++.-| +|.+-+|.-...... ..-|+.+.++++.=. |--||=.+ ++.+...+.++....+
T Consensus 151 ----~~~~~~ia~~~~~~g---~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~D 223 (323)
T COG0042 151 ----DILALEIARILEDAG---ADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGAD 223 (323)
T ss_pred ----cccHHHHHHHHHhcC---CCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCC
Confidence 124455667777777 788999986543211 134777777777655 55454444 6788888888877777
Q ss_pred EEec
Q 019173 181 AVQL 184 (345)
Q Consensus 181 ~~q~ 184 (345)
-+++
T Consensus 224 gVMi 227 (323)
T COG0042 224 GVMI 227 (323)
T ss_pred EEEE
Confidence 7766
No 206
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=22.53 E-value=5.7e+02 Score=24.65 Aligned_cols=90 Identities=13% Similarity=0.129 Sum_probs=58.7
Q ss_pred cEEEeccCCCC-----------CCHHHHHHHHHHHH-HcCC---cceEecCC--CcHH---HHHHHhcCC---CeeEEec
Q 019173 128 DLYYQHRVDTS-----------VPIEETIGEMKKLV-EEGK---IKYIGLSE--ASPD---TIRRAHAVH---PITAVQL 184 (345)
Q Consensus 128 Dl~~lH~~~~~-----------~~~~~~~~~L~~L~-~~G~---ir~iGvS~--~~~~---~l~~~~~~~---~~~~~q~ 184 (345)
=.+-||.++++ .+++++++++.+.. +.|+ |.|+=+.+ .+.+ .+.+++... +..++-+
T Consensus 240 LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~grrv~ieyvLi~GvNDs~e~a~~L~~llk~~~~~~~~VNLI 319 (373)
T PRK14459 240 LAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGRRVSIEYALIRDINDQPWRADLLGKKLHGRGGGWVHVNLI 319 (373)
T ss_pred EEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCCEEEEEEEEeCCCCCCHHHHHHHHHHHhhccCCCeEEEEE
Confidence 34778998653 34688899987776 4454 44554443 3333 355555544 5688999
Q ss_pred cccccccc----cc----cchhhHHHhhCCeEEeecCCCcc
Q 019173 185 EWSLWTRD----IE----NEIVPLCRELGIGIVPYSPLGRG 217 (345)
Q Consensus 185 ~~nl~~~~----~~----~~~l~~~~~~gi~v~a~~pl~~G 217 (345)
+||..... +. ....+..+++||.+......+.-
T Consensus 320 pyNp~~~~~y~~~~~~~~~~F~~~L~~~gi~~tiR~~~G~d 360 (373)
T PRK14459 320 PLNPTPGSKWTASPPEVEREFVRRLRAAGVPCTVRDTRGQE 360 (373)
T ss_pred ccCCCCCCCCcCCCHHHHHHHHHHHHHCCCeEEeeCCCCcC
Confidence 99986531 11 45667778999999998887653
No 207
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=22.47 E-value=73 Score=30.99 Aligned_cols=46 Identities=17% Similarity=0.288 Sum_probs=29.6
Q ss_pred CCccccccccccccCCCC-CCCCCCHH----HHHHHHHHHHHcCCC--eeecCC
Q 019173 17 QGLEVSKLGFGCMSLSGG-YNSPVSEE----DGISIIKHAFNKGIT--FFDTAD 63 (345)
Q Consensus 17 tg~~vs~lg~G~~~~g~~-~~~~~~~~----~a~~~l~~A~~~Gi~--~~DTA~ 63 (345)
-|+...+|.||.=.+|.+ |... +.+ .+.+++...+++|++ |+||+-
T Consensus 78 ~g~~~~~iiLGGDHLGP~~w~~l-paeeAM~~A~~li~ayv~AGF~KIHLD~Sm 130 (424)
T PF08013_consen 78 VGFPRDRIILGGDHLGPNPWQHL-PAEEAMAKAKELIRAYVEAGFTKIHLDCSM 130 (424)
T ss_dssp CT--GGGEEEEEEEESSCCCTTS-BHHHHHHHHHHHHHHHHCTT--EEEE---C
T ss_pred cCCchhhEEecCCCCCcccccCC-CHHHHHHHHHHHHHHHHHcCCceEeecCCC
Confidence 356677899999999864 6543 444 468899999999999 789874
No 208
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=22.45 E-value=1.5e+02 Score=23.84 Aligned_cols=51 Identities=12% Similarity=0.146 Sum_probs=34.4
Q ss_pred HHHHHHHHhhcCCCcccEEEeccCCCCC-CHHHHHHHHHHHHHcCCcceEec
Q 019173 112 RSCCEASLKRLDVEYIDLYYQHRVDTSV-PIEETIGEMKKLVEEGKIKYIGL 162 (345)
Q Consensus 112 ~~~v~~sL~~Lg~d~iDl~~lH~~~~~~-~~~~~~~~L~~L~~~G~ir~iGv 162 (345)
+..+++.|+.+....+|+++++..+... ...++...++.|.+.-.|+-+-+
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~~gv~l~~~ 105 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPKKGVRFIAI 105 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhhcCcEEEEe
Confidence 4566666667777789999998887763 45667777787877623444433
No 209
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=22.28 E-value=7.3e+02 Score=24.10 Aligned_cols=108 Identities=16% Similarity=0.110 Sum_probs=59.3
Q ss_pred CCCCCcHHHHHHHHHhc----CCCCCeEEEeccccccCCccccccCCCHHHHHHHHHHHHhhcC-CCcccEEEeccCCCC
Q 019173 64 KYGPYTNEILLGKALKM----LPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEASLKRLD-VEYIDLYYQHRVDTS 138 (345)
Q Consensus 64 ~Yg~g~sE~~lG~~l~~----~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg-~d~iDl~~lH~~~~~ 138 (345)
.|| .|+.|-+++++ .+.+-++|.|-+....- -++++.-+++.-++.. ..-+.++.++.|...
T Consensus 62 V~G---g~~~L~~~i~~~~~~~~p~~I~v~~tC~~~li----------GdDi~~v~~~~~~~~~~~~~~~vi~v~tpgf~ 128 (428)
T cd01965 62 VFG---GEDNLIEALKNLLSRYKPDVIGVLTTCLTETI----------GDDVAGFIKEFRAEGPEPADFPVVYASTPSFK 128 (428)
T ss_pred eEC---cHHHHHHHHHHHHHhcCCCEEEEECCcchhhc----------CCCHHHHHHHHHhhccCCCCCeEEEeeCCCCC
Confidence 566 46777777766 23444677777654321 1224444444333221 023678888888765
Q ss_pred CCH----HHHHHHHHH-H------HHcCCcceEecCCC---cHHHHHHHhcCCCeeEEec
Q 019173 139 VPI----EETIGEMKK-L------VEEGKIKYIGLSEA---SPDTIRRAHAVHPITAVQL 184 (345)
Q Consensus 139 ~~~----~~~~~~L~~-L------~~~G~ir~iGvS~~---~~~~l~~~~~~~~~~~~q~ 184 (345)
... +.++++|-+ + ++.++|--||-++. +.+.+.++++...+.++.+
T Consensus 129 g~~~~G~~~a~~al~~~~~~~~~~~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~ 188 (428)
T cd01965 129 GSHETGYDNAVKAIIEQLAKPSEVKKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIIL 188 (428)
T ss_pred CcHHHHHHHHHHHHHHHHhcccCCCCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEe
Confidence 432 334444433 2 23456777876653 3577888888766665544
No 210
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=22.18 E-value=4.3e+02 Score=25.86 Aligned_cols=103 Identities=18% Similarity=0.280 Sum_probs=68.4
Q ss_pred HHHHHHHHcCCCeeecCCCCCC-CcHHHHHHHHHhcCCCCCeEEEeccccccCCccccccCCCHHHHHHHHHHHHhhcCC
Q 019173 46 SIIKHAFNKGITFFDTADKYGP-YTNEILLGKALKMLPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEASLKRLDV 124 (345)
Q Consensus 46 ~~l~~A~~~Gi~~~DTA~~Yg~-g~sE~~lG~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~ 124 (345)
..+.+++++|- +-..=.||+ |.--..|.+.+...-.-.+.-.+= ...+...+++.++++.+.++.
T Consensus 37 ~~lrr~v~~~~--l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sA------------v~~gvkdlr~i~e~a~~~~~~ 102 (436)
T COG2256 37 KPLRRAVEAGH--LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSA------------VTSGVKDLREIIEEARKNRLL 102 (436)
T ss_pred chHHHHHhcCC--CceeEEECCCCCCHHHHHHHHHHhhCCceEEecc------------ccccHHHHHHHHHHHHHHHhc
Confidence 46788888772 333346774 777788888887622222221111 123578899999999888876
Q ss_pred CcccEEEe---ccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcH
Q 019173 125 EYIDLYYQ---HRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASP 167 (345)
Q Consensus 125 d~iDl~~l---H~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~ 167 (345)
..=-+++| |+.+.. --++|--.+++|.|-.||.++-++
T Consensus 103 gr~tiLflDEIHRfnK~-----QQD~lLp~vE~G~iilIGATTENP 143 (436)
T COG2256 103 GRRTILFLDEIHRFNKA-----QQDALLPHVENGTIILIGATTENP 143 (436)
T ss_pred CCceEEEEehhhhcChh-----hhhhhhhhhcCCeEEEEeccCCCC
Confidence 65566665 554432 246788899999999999987554
No 211
>PTZ00081 enolase; Provisional
Probab=22.05 E-value=6.7e+02 Score=24.75 Aligned_cols=96 Identities=16% Similarity=0.091 Sum_probs=65.8
Q ss_pred CCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcC--CcceEec--CCCcHHHHHHHhcCCCeeE
Q 019173 106 GNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEG--KIKYIGL--SEASPDTIRRAHAVHPITA 181 (345)
Q Consensus 106 ~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G--~ir~iGv--S~~~~~~l~~~~~~~~~~~ 181 (345)
.+++.+.+-+.+.++.++ +++|-.|-...+ |+.+.+|.++- .+.-+|= +..++..+.+.++....++
T Consensus 281 ~s~~eli~~~~~~l~~y~-----I~~IEDPl~~~D----~eg~~~Lt~~lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~ 351 (439)
T PTZ00081 281 LTGEELVELYLDLVKKYP-----IVSIEDPFDQDD----WEAYAKLTAAIGQKVQIVGDDLLVTNPTRIKKAIEKKACNA 351 (439)
T ss_pred cCHHHHHHHHHHHHhcCC-----cEEEEcCCCccc----HHHHHHHHHhhCCCceEEcCCcccCCHHHHHHHHHhCCCCE
Confidence 577777777777777764 667776655433 45555555543 4544443 2356889999999888899
Q ss_pred Eecccccccc-ccccchhhHHHhhCCeEEe
Q 019173 182 VQLEWSLWTR-DIENEIVPLCRELGIGIVP 210 (345)
Q Consensus 182 ~q~~~nl~~~-~~~~~~l~~~~~~gi~v~a 210 (345)
+|+..|-.-. ....++...|+++|+.++.
T Consensus 352 i~iKvnqiGGITe~l~~a~lA~~~Gi~~ii 381 (439)
T PTZ00081 352 LLLKVNQIGTVTEAIEAAKLAQKNGWGVMV 381 (439)
T ss_pred EEeccccccCHHHHHHHHHHHHHcCCcEEE
Confidence 9998874332 1126789999999999886
No 212
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=21.92 E-value=5.9e+02 Score=22.91 Aligned_cols=55 Identities=13% Similarity=0.178 Sum_probs=40.8
Q ss_pred HHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHH
Q 019173 116 EASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRA 173 (345)
Q Consensus 116 ~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~ 173 (345)
.+.+...+...=|+++.-..... ..+++.+++.+++.| +.-|++++.....+.+.
T Consensus 108 ~~~l~a~~l~~~DvvI~IS~SG~--T~~vi~al~~Ak~~G-a~~I~It~~~~s~L~~~ 162 (257)
T cd05007 108 AADLQAINLTERDVVIGIAASGR--TPYVLGALRYARARG-ALTIGIACNPGSPLLQL 162 (257)
T ss_pred HHHHHHcCCCCCCEEEEEeCCCC--CHHHHHHHHHHHHCC-CeEEEEECCCCChhHHh
Confidence 34455566677799988776544 355899999999998 78899998876666554
No 213
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=21.88 E-value=5.4e+02 Score=22.50 Aligned_cols=100 Identities=16% Similarity=0.171 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeccccccCCccccccCCCHHHHHHHHHHH
Q 019173 39 VSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEAS 118 (345)
Q Consensus 39 ~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~s 118 (345)
.+.++..++++.|.+.|+.-+=..+.| -....+.|+ ...+-|+|=++++.+ ..+.+.-...+++.
T Consensus 15 ~t~~~i~~lc~~A~~~~~~avcv~p~~-----v~~a~~~l~---~~~v~v~tVigFP~G-------~~~~~~K~~E~~~A 79 (211)
T TIGR00126 15 TTEEDIITLCAQAKTYKFAAVCVNPSY-----VPLAKELLK---GTEVRICTVVGFPLG-------ASTTDVKLYETKEA 79 (211)
T ss_pred CCHHHHHHHHHHHHhhCCcEEEeCHHH-----HHHHHHHcC---CCCCeEEEEeCCCCC-------CCcHHHHHHHHHHH
Confidence 478999999999999998777555544 344445553 346888888886542 12333333444444
Q ss_pred HhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHc
Q 019173 119 LKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEE 154 (345)
Q Consensus 119 L~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~ 154 (345)
+ ++|.|-||+++-...-...+++.+.+.+...++.
T Consensus 80 v-~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~ 114 (211)
T TIGR00126 80 I-KYGADEVDMVINIGALKDGNEEVVYDDIRAVVEA 114 (211)
T ss_pred H-HcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHH
Confidence 4 5799999998876543445566677777766653
No 214
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=21.84 E-value=1.2e+02 Score=23.64 Aligned_cols=27 Identities=11% Similarity=0.278 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHHHHcCCCeeecCCCCC
Q 019173 40 SEEDGISIIKHAFNKGITFFDTADKYG 66 (345)
Q Consensus 40 ~~~~a~~~l~~A~~~Gi~~~DTA~~Yg 66 (345)
+.+.+.+....+++.|+..||.+..|.
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R 101 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFR 101 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHh
Confidence 677889999999999999999999886
No 215
>COG5310 Homospermidine synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.79 E-value=3.7e+02 Score=25.59 Aligned_cols=120 Identities=16% Similarity=0.142 Sum_probs=68.5
Q ss_pred cccccccccccCCC--------CCCCC----CCHHHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeE
Q 019173 20 EVSKLGFGCMSLSG--------GYNSP----VSEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLPRENIQ 87 (345)
Q Consensus 20 ~vs~lg~G~~~~g~--------~~~~~----~~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~R~~~~ 87 (345)
+|-.||||..+=|. .+... +|+++ +..+...+.||+|+-++-.--+ -.++++..|+...-+-+.
T Consensus 15 pIimIGfGSigrgTLPLierhf~~d~~~~~viDp~e--k~~k~~~~~girfV~e~it~~N--yk~vL~pll~~~~gqgf~ 90 (481)
T COG5310 15 PIIMIGFGSIGRGTLPLIERHFKFDRSRMVVIDPRE--KDRKILDERGIRFVQEAITRDN--YKDVLKPLLKGVGGQGFC 90 (481)
T ss_pred cEEEEeecccccccchhHHHhcCCChhheEEechhH--HHHHHHHhhhhHHHHHhcChhh--HHHHHHHHhhcCCCceEE
Confidence 45567888544332 12211 34444 6677778899999986642222 357888888774444444
Q ss_pred EEeccccccCCccccccCCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCCCH-----HHHHHHHHHHHHcCCcce
Q 019173 88 VATKFGFAELGLDAVIVKGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPI-----EETIGEMKKLVEEGKIKY 159 (345)
Q Consensus 88 i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~-----~~~~~~L~~L~~~G~ir~ 159 (345)
|---+ +.+.. .+-+.++++|+=|||-..=-|+....+. .++=-+|.+.+.+-+-|.
T Consensus 91 vnLSv------------d~~s~----Dlmr~crk~~vLYidTvVEpW~gfyfDa~adn~artnyaLRet~lrEk~r~ 151 (481)
T COG5310 91 VNLSV------------DTSSL----DLMRLCRKHGVLYIDTVVEPWLGFYFDAQADNAARTNYALRETVLREKRRN 151 (481)
T ss_pred EEeEe------------ccchh----HHHHHHHHcCeEEEeeeeccccccchhhhhhhhhhhhHHHHHHHHHHhccC
Confidence 43332 22233 3445788999999999888887554332 223334444444444443
No 216
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=21.69 E-value=1.9e+02 Score=28.59 Aligned_cols=59 Identities=17% Similarity=0.277 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHH
Q 019173 105 KGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIR 171 (345)
Q Consensus 105 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~ 171 (345)
..+.+.....+.+.|+.||+++ |-+ .......+..-+.+++|+++|++ |...| +.++++
T Consensus 47 ~Rs~~~~~~~I~e~L~wLGI~~-De~----y~QSer~~~y~~~~e~L~e~G~A-Y~C~C--t~eel~ 105 (445)
T PRK12558 47 ERSKQEYADAIAEDLKWLGINW-DRT----FRQSDRFDRYDEAAEKLKAAGRL-YPCYE--TPEELE 105 (445)
T ss_pred ccchHHHHHHHHHHHHHcCCCC-Ccc----ccHHHHHHHHHHHHHHHHHCCCE-EEecC--chHHHH
Confidence 3456888999999999999875 632 11122344557788999999985 44444 344443
No 217
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=21.51 E-value=6.7e+02 Score=23.40 Aligned_cols=149 Identities=9% Similarity=0.034 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHcCCCee-ecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeccccccCCccccccCCCHHHHHHHHHHHH
Q 019173 41 EEDGISIIKHAFNKGITFF-DTADKYGPYTNEILLGKALKMLPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEASL 119 (345)
Q Consensus 41 ~~~a~~~l~~A~~~Gi~~~-DTA~~Yg~g~sE~~lG~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL 119 (345)
.+.+.+.|++..+.||.++ =|+..|. -+-..+++...+..+|+.-.+....+. .+.+ ...
T Consensus 20 ~~~a~~aL~~Lk~~GI~vVlaTGRt~~------ev~~l~~~Lgl~~p~I~eNGA~I~~p~-----~~~~----~~~---- 80 (302)
T PRK12702 20 YGAARQALAALERRSIPLVLYSLRTRA------QLEHLCRQLRLEHPFICEDGSAIYVPE-----HYFP----AGI---- 80 (302)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCHH------HHHHHHHHhCCCCeEEEeCCcEEEEcc-----cccc----ccc----
Confidence 4568999999999999976 4555553 233344443445577777655332111 0100 000
Q ss_pred hhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcCCCee---EEeccccccc--cccc
Q 019173 120 KRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPIT---AVQLEWSLWT--RDIE 194 (345)
Q Consensus 120 ~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~---~~q~~~nl~~--~~~~ 194 (345)
...+....|-|.++... .+..++...|.+++++-..+..|++.++.+++.++-....-. ..|=+||--. +..+
T Consensus 81 ~~~~~~~~~~~~~~~lg--~~y~~ir~~L~~l~~~~~~~f~gF~d~t~~ei~~~TGL~~~~A~~A~~Re~SEp~~w~~~~ 158 (302)
T PRK12702 81 LDEQWQHRPPYYVCALG--LPYPCLRHILQQVRQDSHLDLIGFGDWTASELAAATGIPLEEAERAQKREYSEIFSYSGDP 158 (302)
T ss_pred cccccccCCCceEEecC--CCHHHHHHHHHHHHHHhCCCceehhhCCHHHHHHHhCcCHHHHHHHHhccCCcceEecCCH
Confidence 00111122333333222 346778899999999999999999999998887765442111 1222333211 1112
Q ss_pred cchhhHHHhhCCeEEe
Q 019173 195 NEIVPLCRELGIGIVP 210 (345)
Q Consensus 195 ~~~l~~~~~~gi~v~a 210 (345)
..+.+.+++.|+.++-
T Consensus 159 ~~~~~~~~~~g~~~~~ 174 (302)
T PRK12702 159 ARLREAFAQQEANLTQ 174 (302)
T ss_pred HHHHHHHHHcCCeEEe
Confidence 3448889999998875
No 218
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=21.48 E-value=6.2e+02 Score=24.71 Aligned_cols=61 Identities=11% Similarity=-0.081 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHHhhcCCCcccEEEeccCCCC------C-CHH---HHH-HHHHHHHHcCCcceEecCCCcH
Q 019173 105 KGNPEYVRSCCEASLKRLDVEYIDLYYQHRVDTS------V-PIE---ETI-GEMKKLVEEGKIKYIGLSEASP 167 (345)
Q Consensus 105 ~~~~~~i~~~v~~sL~~Lg~d~iDl~~lH~~~~~------~-~~~---~~~-~~L~~L~~~G~ir~iGvS~~~~ 167 (345)
..+.+.+.+.++..+ +|+.++|.++.+.-.... . ..+ +.+ .+.+.|.+.|- +.+++++|..
T Consensus 204 ~qt~e~~~~~l~~~~-~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy-~~yei~~far 275 (430)
T PRK08208 204 GQTHASWMESLDQAL-VYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGY-TQTSMRMFRR 275 (430)
T ss_pred CCCHHHHHHHHHHHH-hCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCC-eEEeecceec
Confidence 457888888888776 589999999887532211 0 111 233 34566677775 5699999863
No 219
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=21.16 E-value=2.9e+02 Score=20.14 Aligned_cols=56 Identities=16% Similarity=0.235 Sum_probs=34.8
Q ss_pred HHHHHHcCCcceEecCCCcHHHHHHHhcCCCeeEEec--cccccccccccchhhHHHhhCCeEEeec
Q 019173 148 MKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQL--EWSLWTRDIENEIVPLCRELGIGIVPYS 212 (345)
Q Consensus 148 L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~--~~nl~~~~~~~~~l~~~~~~gi~v~a~~ 212 (345)
+++|++.|++. +|. .+..++++......+-+ ..+.. ....+...|++++|+++-+.
T Consensus 3 ~~~~~ragkl~-~G~-----~~v~kai~~gkaklViiA~D~~~~---~~~~i~~~c~~~~Vp~~~~~ 60 (82)
T PRK13602 3 YEKVSQAKSIV-IGT-----KQTVKALKRGSVKEVVVAEDADPR---LTEKVEALANEKGVPVSKVD 60 (82)
T ss_pred hHHHHhcCCEE-EcH-----HHHHHHHHcCCeeEEEEECCCCHH---HHHHHHHHHHHcCCCEEEEC
Confidence 56777777654 554 55666666554433333 33321 12688899999999998655
No 220
>PRK09389 (R)-citramalate synthase; Provisional
Probab=21.13 E-value=6.5e+02 Score=25.16 Aligned_cols=25 Identities=12% Similarity=0.344 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHHcCCCeeecCC
Q 019173 39 VSEEDGISIIKHAFNKGITFFDTAD 63 (345)
Q Consensus 39 ~~~~~a~~~l~~A~~~Gi~~~DTA~ 63 (345)
.+.++-.++.+...+.|+..|+...
T Consensus 21 ~s~e~K~~ia~~L~~~Gv~~IE~G~ 45 (488)
T PRK09389 21 LTPEEKLEIARKLDELGVDVIEAGS 45 (488)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 3789999999999999999999863
No 221
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=21.12 E-value=3.3e+02 Score=26.07 Aligned_cols=210 Identities=18% Similarity=0.112 Sum_probs=94.7
Q ss_pred CHHHHHHHHHHHHHcCCCeeecCCCCCCCcHH---HHHHHHHhcCCCCCeEEEeccccccCCccccccCCCHHHHHHHHH
Q 019173 40 SEEDGISIIKHAFNKGITFFDTADKYGPYTNE---ILLGKALKMLPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCE 116 (345)
Q Consensus 40 ~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE---~~lG~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~ 116 (345)
+.++..+.|+.|.+.|++.+=|+=+.-.+..+ ..+.+.++......+.|..=+.+..-. .-..+.+.+
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~----~lg~~~~dl----- 82 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLK----KLGISYDDL----- 82 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHH----TTT-BTTBT-----
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHH----HcCCCHHHH-----
Confidence 57899999999999999988888666432222 222222222233445544444322100 001111111
Q ss_pred HHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcCCC-eeEEeccccccccccc-
Q 019173 117 ASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHP-ITAVQLEWSLWTRDIE- 194 (345)
Q Consensus 117 ~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~-~~~~q~~~nl~~~~~~- 194 (345)
..++.||++ .+=| |.-.+.++ ..+|-+.|.-=.+=.|+.+.+.+..+.+... ++-+..-+|.+ ++++
T Consensus 83 ~~~~~lGi~---~lRl---D~Gf~~~~----ia~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfY-Pr~~T 151 (357)
T PF05913_consen 83 SFFKELGID---GLRL---DYGFSGEE----IAKLSKNGIKIELNASTITEEELDELIKYGANFSNIIACHNFY-PRPYT 151 (357)
T ss_dssp HHHHHHT-S---EEEE---SSS-SCHH----HHHHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B--STT-
T ss_pred HHHHHcCCC---EEEE---CCCCCHHH----HHHHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEEeccc-CCCCC
Confidence 134556633 2222 22222222 2333334665566667877777888777642 33232223332 2222
Q ss_pred -------cchhhHHHhhCCeEEeecCCCccccCCCCCCCCCCCCCccccCCCCCccchhhhHHHHHHHHHHHHHcCCChH
Q 019173 195 -------NEIVPLCRELGIGIVPYSPLGRGFFGGKAVVESVPPDSFLNFLPRFTGENLDRNRSIYFRIENLAKKYKCTSA 267 (345)
Q Consensus 195 -------~~~l~~~~~~gi~v~a~~pl~~G~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~~ 267 (345)
.+.-.+.++.||.+.|+-|-.. ...|+ ..+. .| ++ ++|.--+.
T Consensus 152 GLs~~~f~~~n~~~k~~gi~~~AFI~g~~-~~rGP-l~~G---------LP-----Tl--------------E~hR~~~p 201 (357)
T PF05913_consen 152 GLSEEFFIEKNQLLKEYGIKTAAFIPGDE-NKRGP-LYEG---------LP-----TL--------------EKHRNLPP 201 (357)
T ss_dssp SB-HHHHHHHHHHHHHTT-EEEEEE--SS-S-BTT-T-S-----------B-----SB--------------GGGTTS-H
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEEecCCC-cccCC-ccCC---------CC-----cc--------------HHHcCCCH
Confidence 4556677899999999877653 22221 0001 11 11 12222345
Q ss_pred HHHHHHHHhCCCCeEeecCCC--CHHHHHHHHhh
Q 019173 268 QLALAWVLEQGDDVVPIPGTT--KIKNLEDNIVS 299 (345)
Q Consensus 268 ~~al~~~l~~~~v~~vivg~~--~~~~l~~nl~a 299 (345)
.+|.+.+...+.|.-|++|=. +.+.+++....
T Consensus 202 ~~aa~~L~~~~~iD~V~IGD~~~s~~el~~~~~~ 235 (357)
T PF05913_consen 202 YAAALELFALGLIDDVIIGDPFASEEELKQLAQY 235 (357)
T ss_dssp HHHHHHHHHTTT--EEEE-SC---HHHHHHHHHC
T ss_pred HHHHHHHHhcCCCCEEEECCCcCCHHHHHHHHHH
Confidence 567788888888889999876 55566665544
No 222
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=21.08 E-value=3.4e+02 Score=24.32 Aligned_cols=85 Identities=20% Similarity=0.148 Sum_probs=52.3
Q ss_pred cEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCCCcHHHHHHHhcCCCeeEEecccccccc-ccccchhhHHHhhCC
Q 019173 128 DLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSEASPDTIRRAHAVHPITAVQLEWSLWTR-DIENEIVPLCRELGI 206 (345)
Q Consensus 128 Dl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~~~~~~l~~~~~~~~~~~~q~~~nl~~~-~~~~~~l~~~~~~gi 206 (345)
++.++-.|-+. +-++.+.++. .+.=-..|=|-++...+..+++....+++|+.....-. ..-..+...|+.+|+
T Consensus 154 ~i~~iEqP~~~----~d~~~~~~l~-~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit~~~~i~~~a~~~gi 228 (263)
T cd03320 154 RIEYIEQPLPP----DDLAELRRLA-AGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPRALLELAEEARARGI 228 (263)
T ss_pred CCceEECCCCh----HHHHHHHHhh-cCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHHHHHHHHHHHHHcCC
Confidence 45555544332 2345555555 33333445555666677777777778888887664321 112688999999999
Q ss_pred eEEeecCCCcc
Q 019173 207 GIVPYSPLGRG 217 (345)
Q Consensus 207 ~v~a~~pl~~G 217 (345)
.++..+-+.++
T Consensus 229 ~~~~~~~~es~ 239 (263)
T cd03320 229 PAVVSSALESS 239 (263)
T ss_pred CEEEEcchhhH
Confidence 99887555443
No 223
>PRK01903 rnpA ribonuclease P; Reviewed
Probab=20.92 E-value=4.5e+02 Score=21.17 Aligned_cols=47 Identities=15% Similarity=0.175 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHhh----cCCC----------cccEEEeccC--CCCCCHHHHHHHHHHHHH
Q 019173 107 NPEYVRSCCEASLKR----LDVE----------YIDLYYQHRV--DTSVPIEETIGEMKKLVE 153 (345)
Q Consensus 107 ~~~~i~~~v~~sL~~----Lg~d----------~iDl~~lH~~--~~~~~~~~~~~~L~~L~~ 153 (345)
.++.|++.+.++.+. |..+ ++|++++..+ ....+.+++-+.|..|.+
T Consensus 66 ~RNRiKR~lREa~R~~~~~l~~~~~~~~~~~~~~~~iv~i~~~~~~~~~~~~~l~~~l~~ll~ 128 (133)
T PRK01903 66 KRNRIKRLMREAYRLEKHVLLDRLETDAGAKNRQLAIAFLYTGRSDEIPSLAEFRREMRKLLQ 128 (133)
T ss_pred hhhHHHHHHHHHHHHhHhhhcccccccccccCcceEEEEEEeccccccCCHHHHHHHHHHHHH
Confidence 466667666666655 4432 3799999887 333456666666666544
No 224
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=20.58 E-value=6.4e+02 Score=22.80 Aligned_cols=115 Identities=16% Similarity=0.154 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHHcCCCeeecCCCCCCCcHHHHHHHHHhcCCCCCeEEEeccccccCCccccccCCCHHHHHHHHHHHH
Q 019173 40 SEEDGISIIKHAFNKGITFFDTADKYGPYTNEILLGKALKMLPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEASL 119 (345)
Q Consensus 40 ~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE~~lG~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~sL 119 (345)
+.++..++++...+.|+..|+... ...+..+.-.-+.+....+. +++... .....+.++++++
T Consensus 20 s~~~k~~i~~~L~~~Gv~~IEvG~-P~~~~~~~~~~~~l~~~~~~-----~~v~~~--------~r~~~~di~~a~~--- 82 (262)
T cd07948 20 DTEDKIEIAKALDAFGVDYIELTS-PAASPQSRADCEAIAKLGLK-----AKILTH--------IRCHMDDARIAVE--- 82 (262)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEC-CCCCHHHHHHHHHHHhCCCC-----CcEEEE--------ecCCHHHHHHHHH---
Confidence 779999999999999999999863 22211222222333331221 111110 1223455555543
Q ss_pred hhcCCCcccEEEeccC-----CCCCCH----HHHHHHHHHHHHcCCcceEecCC---CcHHHHHHH
Q 019173 120 KRLDVEYIDLYYQHRV-----DTSVPI----EETIGEMKKLVEEGKIKYIGLSE---ASPDTIRRA 173 (345)
Q Consensus 120 ~~Lg~d~iDl~~lH~~-----~~~~~~----~~~~~~L~~L~~~G~ir~iGvS~---~~~~~l~~~ 173 (345)
.|++.|.++.--++ ...... +.+.+.++.+++.|.--.+++.. .+.+.+.++
T Consensus 83 --~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~ 146 (262)
T cd07948 83 --TGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRV 146 (262)
T ss_pred --cCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHH
Confidence 47777776653111 001223 34555667778888655565532 344544443
No 225
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=20.56 E-value=2.9e+02 Score=26.00 Aligned_cols=86 Identities=17% Similarity=0.109 Sum_probs=56.1
Q ss_pred cEEEeccCCCCCCHHHHHHHHHHHHHcCCcc-eEecCCCcHHHHHHHhcCCCeeEEecccccccc-ccccchhhHHHhhC
Q 019173 128 DLYYQHRVDTSVPIEETIGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWTR-DIENEIVPLCRELG 205 (345)
Q Consensus 128 Dl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~nl~~~-~~~~~~l~~~~~~g 205 (345)
++.++-.|-... -++.+.+|++.-.+. +.|=|.++.+.+..+++...++++|+..+..-. ..-.++...|+.+|
T Consensus 204 ~i~~iEeP~~~~----d~~~~~~l~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit~~~~i~~~A~~~g 279 (354)
T cd03317 204 GLLMIEQPLAAD----DLIDHAELQKLLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLTEALKIHDLCQEHG 279 (354)
T ss_pred CccEEECCCChh----HHHHHHHHHhhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHHHHHHHHHHHHHcC
Confidence 555555543322 245666666654322 445566888889999888888999987654332 11268899999999
Q ss_pred CeEEeecCCCcc
Q 019173 206 IGIVPYSPLGRG 217 (345)
Q Consensus 206 i~v~a~~pl~~G 217 (345)
+.++..+.+.+|
T Consensus 280 i~~~~g~~~es~ 291 (354)
T cd03317 280 IPVWCGGMLESG 291 (354)
T ss_pred CcEEecCcccch
Confidence 999875554433
No 226
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=20.55 E-value=4.8e+02 Score=23.19 Aligned_cols=71 Identities=13% Similarity=0.086 Sum_probs=47.9
Q ss_pred cCCCHHHHHHHHHHHHhhcCC--------------------------CcccEEEeccCCCCCCH---HHHHHHHHHHHHc
Q 019173 104 VKGNPEYVRSCCEASLKRLDV--------------------------EYIDLYYQHRVDTSVPI---EETIGEMKKLVEE 154 (345)
Q Consensus 104 ~~~~~~~i~~~v~~sL~~Lg~--------------------------d~iDl~~lH~~~~~~~~---~~~~~~L~~L~~~ 154 (345)
++.+...+++.+++.-++|+. ...+++.+.-|..-.++ ..+.+.+.+++.+
T Consensus 103 ~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~e 182 (245)
T COG4555 103 NGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNE 182 (245)
T ss_pred hhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcC
Confidence 345667778888888888874 22233444333322222 4678888999999
Q ss_pred CCcceEecCCCcHHHHHHHhcC
Q 019173 155 GKIKYIGLSEASPDTIRRAHAV 176 (345)
Q Consensus 155 G~ir~iGvS~~~~~~l~~~~~~ 176 (345)
|+ .+=+|+|..+.++++++.
T Consensus 183 gr--~viFSSH~m~EvealCDr 202 (245)
T COG4555 183 GR--AVIFSSHIMQEVEALCDR 202 (245)
T ss_pred Cc--EEEEecccHHHHHHhhhe
Confidence 98 788999998888887654
No 227
>PF13518 HTH_28: Helix-turn-helix domain
Probab=20.47 E-value=1.2e+02 Score=19.30 Aligned_cols=22 Identities=9% Similarity=0.537 Sum_probs=16.6
Q ss_pred HHHHHHHHcCCChHHHHHHHHHh
Q 019173 254 RIENLAKKYKCTSAQLALAWVLE 276 (345)
Q Consensus 254 ~l~~ia~~~g~s~~~~al~~~l~ 276 (345)
.+.++|+++|+|..++ .+|+-.
T Consensus 14 s~~~~a~~~gis~~tv-~~w~~~ 35 (52)
T PF13518_consen 14 SVREIAREFGISRSTV-YRWIKR 35 (52)
T ss_pred CHHHHHHHHCCCHhHH-HHHHHH
Confidence 4677889999988765 777744
No 228
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=20.33 E-value=5.2e+02 Score=22.56 Aligned_cols=83 Identities=17% Similarity=0.231 Sum_probs=51.6
Q ss_pred HHHHHHHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEecCC-CcHHHHHHHhcCCCeeEEecccccccc
Q 019173 113 SCCEASLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPITAVQLEWSLWTR 191 (345)
Q Consensus 113 ~~v~~sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGvS~-~~~~~l~~~~~~~~~~~~q~~~nl~~~ 191 (345)
..+-+.|-+-|++.+-+=+ - ..+.++.+++++++..=-.||..+ .+.++++.+++... +++ .++
T Consensus 23 ~~~~~al~~~Gi~~iEit~---~-----t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA-~Fi---vsP--- 87 (204)
T TIGR01182 23 LPLAKALIEGGLRVLEVTL---R-----TPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGA-QFI---VSP--- 87 (204)
T ss_pred HHHHHHHHHcCCCEEEEeC---C-----CccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCC-CEE---ECC---
Confidence 3455667777755444433 1 123455566666654324588877 58888888887642 222 122
Q ss_pred ccccchhhHHHhhCCeEEe
Q 019173 192 DIENEIVPLCRELGIGIVP 210 (345)
Q Consensus 192 ~~~~~~l~~~~~~gi~v~a 210 (345)
....+++++|+++||.++.
T Consensus 88 ~~~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 88 GLTPELAKHAQDHGIPIIP 106 (204)
T ss_pred CCCHHHHHHHHHcCCcEEC
Confidence 2236899999999998885
No 229
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.29 E-value=7.5e+02 Score=23.53 Aligned_cols=89 Identities=11% Similarity=0.054 Sum_probs=55.9
Q ss_pred EEEeccCCCC-----------CCHHHHHHHHHHHHHcC--C--cceEecC--CCcHH---HHHHHhcCCCeeEEeccccc
Q 019173 129 LYYQHRVDTS-----------VPIEETIGEMKKLVEEG--K--IKYIGLS--EASPD---TIRRAHAVHPITAVQLEWSL 188 (345)
Q Consensus 129 l~~lH~~~~~-----------~~~~~~~~~L~~L~~~G--~--ir~iGvS--~~~~~---~l~~~~~~~~~~~~q~~~nl 188 (345)
.+-||.|+.+ .+++++++++.+..+.. + +-|+=+. |.+.+ .|.+++...+..++.++||+
T Consensus 210 avSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLIp~Np 289 (345)
T PRK14466 210 AISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLIRFHA 289 (345)
T ss_pred EEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEEecCC
Confidence 5778988542 35688899888865543 2 1223222 44444 44555555667889999997
Q ss_pred ccc----ccc----cchhhHHHhhCCeEEeecCCCcc
Q 019173 189 WTR----DIE----NEIVPLCRELGIGIVPYSPLGRG 217 (345)
Q Consensus 189 ~~~----~~~----~~~l~~~~~~gi~v~a~~pl~~G 217 (345)
... .+. ....+..+++||.+......+.-
T Consensus 290 ~~~~~~~~~s~~~~~~F~~~L~~~gi~~tvR~s~G~d 326 (345)
T PRK14466 290 IPGVDLEGSDMARMEAFRDYLTSHGVFTTIRASRGED 326 (345)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCCCCCc
Confidence 433 111 35556677899999998877653
No 230
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=20.19 E-value=4.4e+02 Score=23.46 Aligned_cols=51 Identities=12% Similarity=0.095 Sum_probs=30.8
Q ss_pred cHHHHHHHhcCCCeeEEeccccc-------cccccccchhhHHHhhCCeEEeecCCCc
Q 019173 166 SPDTIRRAHAVHPITAVQLEWSL-------WTRDIENEIVPLCRELGIGIVPYSPLGR 216 (345)
Q Consensus 166 ~~~~l~~~~~~~~~~~~q~~~nl-------~~~~~~~~~l~~~~~~gi~v~a~~pl~~ 216 (345)
+..+..+.++...++.+++..+. +......++.+.++++||.+.++.|...
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~s~~~~~~ 71 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPIIGYTPETN 71 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEEEecCccc
Confidence 34444444555667777663211 1111125788899999999999887654
No 231
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=20.15 E-value=6.5e+02 Score=22.74 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeeecC
Q 019173 39 VSEEDGISIIKHAFNKGITFFDTA 62 (345)
Q Consensus 39 ~~~~~a~~~l~~A~~~Gi~~~DTA 62 (345)
.+.++..++.+..-+.||..|+..
T Consensus 17 f~~~~~~~ia~~L~~~GVd~IEvG 40 (266)
T cd07944 17 FGDEFVKAIYRALAAAGIDYVEIG 40 (266)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEee
Confidence 378999999999999999999987
No 232
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=20.11 E-value=7.5e+02 Score=23.42 Aligned_cols=151 Identities=11% Similarity=0.024 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHHcCCCeeecCCCCCCCcHH--HHHHHHHhcCCCCCeEEEeccccccCCccccccCCCHHHHHHHHHH
Q 019173 40 SEEDGISIIKHAFNKGITFFDTADKYGPYTNE--ILLGKALKMLPRENIQVATKFGFAELGLDAVIVKGNPEYVRSCCEA 117 (345)
Q Consensus 40 ~~~~a~~~l~~A~~~Gi~~~DTA~~Yg~g~sE--~~lG~~l~~~~R~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~v~~ 117 (345)
+.++..+.+..+.+.|++.|=.- .++...-+ ...=+++++.--+++-|.-=.. ..++.+... .+-+
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik-~~~~~~~~~di~~i~~vR~~~G~~~~l~vDan----------~~~~~~~A~-~~~~ 210 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLH-PWGPGVVRRDLKACLAVREAVGPDMRLMHDGA----------HWYSRADAL-RLGR 210 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEe-cCCchhHHHHHHHHHHHHHHhCCCCeEEEECC----------CCcCHHHHH-HHHH
Confidence 56777888888999999988552 12210011 1122333331112232221111 124444333 2233
Q ss_pred HHhhcCCCcccEEEeccCCCCCCHHHHHHHHHHHHHcCCcceEec--CCCc-HHHHHHHhcCCCeeEEecccccccc-cc
Q 019173 118 SLKRLDVEYIDLYYQHRVDTSVPIEETIGEMKKLVEEGKIKYIGL--SEAS-PDTIRRAHAVHPITAVQLEWSLWTR-DI 193 (345)
Q Consensus 118 sL~~Lg~d~iDl~~lH~~~~~~~~~~~~~~L~~L~~~G~ir~iGv--S~~~-~~~l~~~~~~~~~~~~q~~~nl~~~-~~ 193 (345)
.|+.+ ++.++-.|-... + ++.+.+|+++-.+- |.. +-++ ...+..+++....+++|+..+..-. ..
T Consensus 211 ~l~~~-----~l~~iEeP~~~~---d-~~~~~~l~~~~~ip-Ia~~E~~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit~ 280 (368)
T cd03329 211 ALEEL-----GFFWYEDPLREA---S-ISSYRWLAEKLDIP-ILGTEHSRGALESRADWVLAGATDFLRADVNLVGGITG 280 (368)
T ss_pred Hhhhc-----CCCeEeCCCCch---h-HHHHHHHHhcCCCC-EEccCcccCcHHHHHHHHHhCCCCEEecCccccCCHHH
Confidence 34444 344444443322 2 36667888876555 433 3356 7888888888888999997775421 11
Q ss_pred ccchhhHHHhhCCeEEeec
Q 019173 194 ENEIVPLCRELGIGIVPYS 212 (345)
Q Consensus 194 ~~~~l~~~~~~gi~v~a~~ 212 (345)
-.++...|+++|+.+....
T Consensus 281 ~~~ia~~a~~~gi~~~~h~ 299 (368)
T cd03329 281 AMKTAHLAEAFGLDVELHG 299 (368)
T ss_pred HHHHHHHHHHcCCEEEEEC
Confidence 2689999999999997644
No 233
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=20.08 E-value=1.5e+02 Score=28.84 Aligned_cols=50 Identities=12% Similarity=0.252 Sum_probs=36.4
Q ss_pred CccccccccccccCCCC-CCCCCCHH----HHHHHHHHHHHcCCC--eeecCC-CCCCC
Q 019173 18 GLEVSKLGFGCMSLSGG-YNSPVSEE----DGISIIKHAFNKGIT--FFDTAD-KYGPY 68 (345)
Q Consensus 18 g~~vs~lg~G~~~~g~~-~~~~~~~~----~a~~~l~~A~~~Gi~--~~DTA~-~Yg~g 68 (345)
|+...+|.||.=.+|.+ |-.. +.+ .+.+++...+++|++ |+||+- .++++
T Consensus 76 gf~~~~iiLggDHlGPn~Wq~~-pa~eAM~~A~~li~ayV~AGF~kIHLD~Sm~ca~d~ 133 (421)
T PRK15052 76 GFPRERIILGGDHLGPNCWQQE-PADAAMEKSVELVKAYVRAGFSKIHLDASMSCADDP 133 (421)
T ss_pred CCChhcEEeecCCCCCccccCC-CHHHHHHHHHHHHHHHHHcCCceEEecCCCCccCCC
Confidence 55666899999998864 5443 333 478999999999999 788875 34444
No 234
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=20.03 E-value=7.3e+02 Score=23.29 Aligned_cols=72 Identities=13% Similarity=0.113 Sum_probs=48.2
Q ss_pred HHHHHHHHHcCCcc-eEecCCCcHHHHHHHhcCCCeeEEeccccccccccccchhhHHHhhCCeEEeecCCCccc
Q 019173 145 IGEMKKLVEEGKIK-YIGLSEASPDTIRRAHAVHPITAVQLEWSLWTRDIENEIVPLCRELGIGIVPYSPLGRGF 218 (345)
Q Consensus 145 ~~~L~~L~~~G~ir-~iGvS~~~~~~l~~~~~~~~~~~~q~~~nl~~~~~~~~~l~~~~~~gi~v~a~~pl~~G~ 218 (345)
++.+.+|+++-.+. +.|=|-++...+.+++.....+++|+..+.+-.- .+++..|+++||.++..+.+.+++
T Consensus 173 ~~~la~Lr~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GGi--t~~lkiA~~~gi~v~v~s~~es~i 245 (327)
T PRK02901 173 VEELAELRRRVGVPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGGV--RAALDIAEQIGLPVVVSSALDTSV 245 (327)
T ss_pred HHHHHHHHHhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCCH--HHHHHHHHHcCCcEEEeCCcccHH
Confidence 45555565553333 2233446677777777777888888877754431 467789999999999888776653
Done!