Query 019179
Match_columns 345
No_of_seqs 240 out of 1735
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 07:20:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019179.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019179hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 1.5E-59 3.2E-64 453.4 35.9 327 14-345 10-431 (431)
2 PTZ00165 aspartyl protease; Pr 100.0 1.6E-44 3.5E-49 350.8 29.9 242 79-344 109-450 (482)
3 cd05478 pepsin_A Pepsin A, asp 100.0 2.6E-42 5.6E-47 322.3 25.0 226 83-339 3-317 (317)
4 KOG1339 Aspartyl protease [Pos 100.0 4.3E-42 9.4E-47 329.7 26.8 259 82-343 38-397 (398)
5 cd05490 Cathepsin_D2 Cathepsin 100.0 3.9E-42 8.4E-47 322.2 25.6 225 86-339 2-325 (325)
6 cd06096 Plasmepsin_5 Plasmepsi 100.0 3.2E-42 6.8E-47 322.8 24.0 250 89-343 2-326 (326)
7 cd05486 Cathespin_E Cathepsin 100.0 1.7E-41 3.6E-46 316.7 23.1 220 91-339 1-316 (316)
8 cd06098 phytepsin Phytepsin, a 100.0 3.7E-41 7.9E-46 314.4 24.4 228 83-339 3-317 (317)
9 PTZ00147 plasmepsin-1; Provisi 100.0 9.4E-41 2E-45 322.2 26.0 231 80-341 129-450 (453)
10 cd05477 gastricsin Gastricsins 100.0 2.1E-40 4.6E-45 309.6 25.2 222 88-340 1-318 (318)
11 PTZ00013 plasmepsin 4 (PM4); P 100.0 4.4E-40 9.6E-45 317.0 27.1 232 79-341 127-449 (450)
12 cd05485 Cathepsin_D_like Cathe 100.0 2.7E-40 5.9E-45 310.0 24.8 229 82-339 3-329 (329)
13 cd05488 Proteinase_A_fungi Fun 100.0 5.1E-40 1.1E-44 307.2 23.9 225 84-339 4-320 (320)
14 cd05487 renin_like Renin stimu 100.0 8.2E-40 1.8E-44 306.6 24.8 226 85-340 3-326 (326)
15 cd05472 cnd41_like Chloroplast 100.0 9.9E-39 2.1E-43 295.8 24.1 205 90-342 1-299 (299)
16 cd05475 nucellin_like Nucellin 100.0 1.7E-38 3.7E-43 290.4 24.4 209 89-342 1-273 (273)
17 cd05473 beta_secretase_like Be 100.0 2.6E-37 5.6E-42 293.8 22.2 229 89-345 2-350 (364)
18 cd05489 xylanase_inhibitor_I_l 100.0 6.7E-37 1.5E-41 289.6 22.9 228 97-340 2-361 (362)
19 cd05476 pepsin_A_like_plant Ch 100.0 2.2E-36 4.8E-41 275.4 23.5 197 90-342 1-265 (265)
20 cd06097 Aspergillopepsin_like 100.0 2.5E-35 5.4E-40 270.3 20.8 116 91-230 1-118 (278)
21 PF00026 Asp: Eukaryotic aspar 100.0 6.5E-36 1.4E-40 278.7 16.1 222 90-340 1-317 (317)
22 cd05474 SAP_like SAPs, pepsin- 100.0 5.4E-33 1.2E-37 256.8 21.4 189 90-340 2-295 (295)
23 cd05471 pepsin_like Pepsin-lik 100.0 7.7E-31 1.7E-35 240.4 20.9 121 91-237 1-130 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 1.1E-27 2.4E-32 202.1 13.0 136 91-238 1-140 (164)
25 cd05470 pepsin_retropepsin_lik 99.9 5.6E-25 1.2E-29 173.1 12.6 106 93-224 1-109 (109)
26 PF14541 TAXi_C: Xylanase inhi 99.6 2E-15 4.2E-20 127.2 9.2 80 260-339 72-161 (161)
27 cd05483 retropepsin_like_bacte 98.2 6.2E-06 1.3E-10 62.4 7.3 94 89-226 1-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 97.0 0.0034 7.4E-08 50.0 7.7 96 87-226 8-103 (121)
29 PF13650 Asp_protease_2: Aspar 96.8 0.011 2.4E-07 43.7 8.5 89 93-225 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 95.2 0.16 3.5E-06 40.5 8.7 93 87-226 13-107 (124)
31 cd05484 retropepsin_like_LTR_2 93.1 0.12 2.6E-06 38.7 3.5 29 91-121 1-29 (91)
32 PF13975 gag-asp_proteas: gag- 90.2 0.56 1.2E-05 33.4 4.2 34 87-122 5-38 (72)
33 COG3577 Predicted aspartyl pro 88.0 1.8 4E-05 37.2 6.4 83 85-206 100-182 (215)
34 PF00077 RVP: Retroviral aspar 84.9 1.4 3.1E-05 33.2 4.0 28 92-121 7-34 (100)
35 cd05482 HIV_retropepsin_like R 79.1 2.8 6E-05 31.1 3.5 25 94-120 2-26 (87)
36 PF11925 DUF3443: Protein of u 77.1 3.7 8E-05 38.7 4.4 56 170-228 82-150 (370)
37 cd06095 RP_RTVL_H_like Retrope 76.8 3.3 7.1E-05 30.5 3.4 26 94-121 2-27 (86)
38 PF08284 RVP_2: Retroviral asp 75.6 8.2 0.00018 31.2 5.6 30 311-340 103-132 (135)
39 PF12384 Peptidase_A2B: Ty3 tr 61.3 12 0.00026 31.2 3.7 29 92-120 34-62 (177)
40 cd01206 Homer Homer type EVH1 49.9 47 0.001 25.7 5.0 39 198-236 61-100 (111)
41 PF09668 Asp_protease: Asparty 44.7 41 0.0009 26.7 4.3 31 88-120 22-52 (124)
42 cd05479 RP_DDI RP_DDI; retrope 42.9 26 0.00057 27.6 3.0 27 311-337 98-124 (124)
43 cd05481 retropepsin_like_LTR_1 37.1 27 0.00059 26.0 2.1 18 102-119 9-26 (93)
44 TIGR03698 clan_AA_DTGF clan AA 36.5 47 0.001 25.5 3.4 24 93-116 2-29 (107)
45 cd06094 RP_Saci_like RP_Saci_l 33.3 1.9E+02 0.0042 21.5 6.0 22 102-123 8-29 (89)
46 PF08194 DIM: DIM protein; In 29.7 51 0.0011 20.0 2.0 16 1-17 1-16 (36)
47 cd05471 pepsin_like Pepsin-lik 26.5 69 0.0015 28.5 3.3 27 313-339 257-283 (283)
48 cd05475 nucellin_like Nucellin 25.9 79 0.0017 28.5 3.6 32 89-120 157-194 (273)
49 cd06098 phytepsin Phytepsin, a 23.3 87 0.0019 28.9 3.4 32 89-120 188-227 (317)
50 PF08284 RVP_2: Retroviral asp 21.6 1.4E+02 0.003 24.0 3.8 30 89-120 20-49 (135)
51 cd00303 retropepsin_like Retro 21.0 94 0.002 20.9 2.5 22 94-117 2-23 (92)
52 cd06096 Plasmepsin_5 Plasmepsi 20.1 76 0.0016 29.4 2.3 32 89-120 208-248 (326)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=1.5e-59 Score=453.39 Aligned_cols=327 Identities=60% Similarity=1.034 Sum_probs=268.0
Q ss_pred HHHhhcccccccCCceEEEEeccCCCCCCCCCCCCChhHHHHHHHhhhHhhhhhhcccccCCCCCCcccccccCCccEEE
Q 019179 14 LCFYVVSPIEAQTGGFSVELIHRDSPKSPFYNSSETPYQRLRDALTRSLNRLNHFNQNSSISSSKASQADIIPNNANYLI 93 (345)
Q Consensus 14 ~~~~~~~~~~~~~~~~~l~l~~r~~~~~p~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ 93 (345)
+.+.++++..++.++++++|+||++|++|++.+.....++++++++|+.+|++++.++... ...+..+....+++|++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~--~~~~~~~~~~~~~~Y~v 87 (431)
T PLN03146 10 FSFSELSAAEAPKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDAS--PNDPQSDLISNGGEYLM 87 (431)
T ss_pred HHHhhhhhccccCCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhcccc--CCccccCcccCCccEEE
Confidence 4444455556677899999999999999998777778899999999999999998654222 12334455667889999
Q ss_pred EEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCcceecCCCCccccCCCCC-CCCCC-CceeEEE
Q 019179 94 RISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQK-SCSGV-NCQYSVS 171 (345)
Q Consensus 94 ~i~vGtP~q~~~l~~DTGS~~~wv~~~~C~~~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~-~c~~~-~~~~~~~ 171 (345)
+|.||||||++.|++||||+++||+|.+|. .|..+.++.|||++|+||+.++|+++.|...+.. .|..+ .|.|.+.
T Consensus 88 ~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~--~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~~~c~y~i~ 165 (431)
T PLN03146 88 NISIGTPPVPILAIADTGSDLIWTQCKPCD--DCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDENTCTYSYS 165 (431)
T ss_pred EEEcCCCCceEEEEECCCCCcceEcCCCCc--ccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCCCCCeeEEE
Confidence 999999999999999999999999999998 8988888999999999999999999999876643 47654 6999999
Q ss_pred eCCCCeEeeeEEEEEEEecCCCCCccccCCeEEEeEEecCCCCCCCCceeeecCCCCChhHHHhhhh-------------
Q 019179 172 YGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGGGDISLISQMRTT------------- 238 (345)
Q Consensus 172 Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~------------- 238 (345)
|+||+.+.|.+++|+|+|++..++.+.++++.|||++...+.|....+||||||++.+|+++||...
T Consensus 166 Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~FSycL~~~~ 245 (431)
T PLN03146 166 YGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKFSYCLVPLS 245 (431)
T ss_pred eCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCcEEEECCCCC
Confidence 9999988899999999999865444578999999999887766346899999999999999997532
Q ss_pred ----------cCCe---------------------------------ee-c-------CCCCCcEEEcC-----------
Q 019179 239 ----------IAGN---------------------------------QR-L-------GVSTPDIVIDS----------- 256 (345)
Q Consensus 239 ----------~g~~---------------------------------k~-~-------~~~~~~~iiDs----------- 256 (345)
||+. ++ . ..+.+++||||
T Consensus 246 ~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~~~ 325 (431)
T PLN03146 246 SDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPSDF 325 (431)
T ss_pred CCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCHHH
Confidence 1110 00 0 01125799999
Q ss_pred ------------C------CccccccccccccCCCcCeEEEEEcCcEEEeCCcceEEEeCCCeEEEEEEecCCCcceech
Q 019179 257 ------------D------PTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSVFKGITNSVPIYGN 318 (345)
Q Consensus 257 ------------~------~~~~~~~C~~~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~~~~~~C~~~~~~~~~~~ilG~ 318 (345)
. ....+..||.......+|+|+|+|+|+++.|+|++|+++..++..|+++.+. .+.||||+
T Consensus 326 y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~F~Ga~~~l~~~~~~~~~~~~~~Cl~~~~~-~~~~IlG~ 404 (431)
T PLN03146 326 YSELESAVEEAIGGERVSDPQGLLSLCYSSTSDIKLPIITAHFTGADVKLQPLNTFVKVSEDLVCFAMIPT-SSIAIFGN 404 (431)
T ss_pred HHHHHHHHHHHhccccCCCCCCCCCccccCCCCCCCCeEEEEECCCeeecCcceeEEEcCCCcEEEEEecC-CCceEECe
Confidence 0 1123568997543357999999999999999999999988777789998765 45799999
Q ss_pred hhhceeEEEEECCCCEEEEeeCCCCCC
Q 019179 319 IMQTNFLVGYDIEQQTVSFKPTDCTKQ 345 (345)
Q Consensus 319 ~fl~~~y~vfD~~~~riGfA~~~C~~~ 345 (345)
.|||++|++||++++|||||+++|+++
T Consensus 405 ~~q~~~~vvyDl~~~~igFa~~~C~~~ 431 (431)
T PLN03146 405 LAQMNFLVGYDLESKTVSFKPTDCTKM 431 (431)
T ss_pred eeEeeEEEEEECCCCEEeeecCCcCcC
Confidence 999999999999999999999999975
No 2
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1.6e-44 Score=350.80 Aligned_cols=242 Identities=21% Similarity=0.401 Sum_probs=189.6
Q ss_pred CcccccccCCccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCcceecCCCCccccCCCC
Q 019179 79 ASQADIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQ 158 (345)
Q Consensus 79 ~~~~~~~~~~~~Y~~~i~vGtP~q~~~l~~DTGS~~~wv~~~~C~~~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~ 158 (345)
..+.+.++.+.+|+++|.||||||+|+|+|||||+++||+|..|....| +.++.|||++|+||+.+.+...
T Consensus 109 ~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C--~~~~~yd~s~SSTy~~~~~~~~------- 179 (482)
T PTZ00165 109 LQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGC--APHRKFDPKKSSTYTKLKLGDE------- 179 (482)
T ss_pred cceecccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccc--cccCCCCccccCCcEecCCCCc-------
Confidence 4566778999999999999999999999999999999999999985567 6789999999999998432110
Q ss_pred CCCCCCCceeEEEeCCCCeEeeeEEEEEEEecCCCCCccccCCeEEEeEEecCC-CC-CCCCceeeecCCCCCh------
Q 019179 159 KSCSGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGG-LF-NSKTTGIVGLGGGDIS------ 230 (345)
Q Consensus 159 ~~c~~~~~~~~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s------ 230 (345)
...+.+.|++|+.. |.+++|+|+|++. .++++.||+++..++ .| ...+|||||||++.++
T Consensus 180 ------~~~~~i~YGsGs~~-G~l~~DtV~ig~l-----~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~ 247 (482)
T PTZ00165 180 ------SAETYIQYGTGECV-LALGKDTVKIGGL-----KVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKK 247 (482)
T ss_pred ------cceEEEEeCCCcEE-EEEEEEEEEECCE-----EEccEEEEEEEeccccccccccccceeecCCCcccccccCC
Confidence 02578999999887 9999999999986 999999999998765 35 5679999999998652
Q ss_pred ---hHHHhhhh-----------------------cCCe-----------------------------eecC------CCC
Q 019179 231 ---LISQMRTT-----------------------IAGN-----------------------------QRLG------VST 249 (345)
Q Consensus 231 ---~~~ql~~~-----------------------~g~~-----------------------------k~~~------~~~ 249 (345)
++.+|.++ +|+. +... ...
T Consensus 248 ~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~~yW~i~l~~i~vgg~~~~~~~~~ 327 (482)
T PTZ00165 248 ALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVISTDYWEIEVVDILIDGKSLGFCDRK 327 (482)
T ss_pred CCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEccccceEEEEeCeEEECCEEeeecCCc
Confidence 33333221 2221 0011 234
Q ss_pred CcEEEcCCC----------------ccccccccccccCCCcCeEEEEEcCc-----EEEeCCcceEEEe----CCCeEEE
Q 019179 250 PDIVIDSDP----------------TGSLELCYSFNSLSQVPEVTIHFRGA-----DVKLSRSNFFVKV----SEDIVCS 304 (345)
Q Consensus 250 ~~~iiDs~~----------------~~~~~~C~~~~~~~~~P~i~f~f~g~-----~~~l~~~~y~~~~----~~~~~C~ 304 (345)
..+|+||+. .....+|+... .+|+|+|+|+|. +|.|+|++|+++. .++..|+
T Consensus 328 ~~aIiDTGTSli~lP~~~~~~i~~~i~~~~~C~~~~---~lP~itf~f~g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~ 404 (482)
T PTZ00165 328 CKAAIDTGSSLITGPSSVINPLLEKIPLEEDCSNKD---SLPRISFVLEDVNGRKIKFDMDPEDYVIEEGDSEEQEHQCV 404 (482)
T ss_pred eEEEEcCCCccEeCCHHHHHHHHHHcCCcccccccc---cCCceEEEECCCCCceEEEEEchHHeeeecccCCCCCCeEE
Confidence 679999911 11234787654 799999999864 8999999999974 2345897
Q ss_pred E-EEecC-----CCcceechhhhceeEEEEECCCCEEEEeeCCCCC
Q 019179 305 V-FKGIT-----NSVPIYGNIMQTNFLVGYDIEQQTVSFKPTDCTK 344 (345)
Q Consensus 305 ~-~~~~~-----~~~~ilG~~fl~~~y~vfD~~~~riGfA~~~C~~ 344 (345)
. |.+.+ ++.||||++|||+||+|||++++|||||+++|..
T Consensus 405 ~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~ 450 (482)
T PTZ00165 405 IGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQ 450 (482)
T ss_pred EEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccCC
Confidence 5 77643 3579999999999999999999999999999863
No 3
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=2.6e-42 Score=322.28 Aligned_cols=226 Identities=26% Similarity=0.460 Sum_probs=181.7
Q ss_pred ccccCCccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCcceecCCCCccccCCCCCCCC
Q 019179 83 DIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCS 162 (345)
Q Consensus 83 ~~~~~~~~Y~~~i~vGtP~q~~~l~~DTGS~~~wv~~~~C~~~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~ 162 (345)
+.++.+..|+++|.||||+|++.|+|||||+++||+|..|....| +.++.|||++|+|++...
T Consensus 3 l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c--~~~~~f~~~~Sst~~~~~--------------- 65 (317)
T cd05478 3 LTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQAC--SNHNRFNPRQSSTYQSTG--------------- 65 (317)
T ss_pred cccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccc--cccCcCCCCCCcceeeCC---------------
Confidence 345678999999999999999999999999999999999984456 678999999999999887
Q ss_pred CCCceeEEEeCCCCeEeeeEEEEEEEecCCCCCccccCCeEEEeEEecCCCC--CCCCceeeecCCCCCh------hHHH
Q 019179 163 GVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLF--NSKTTGIVGLGGGDIS------LISQ 234 (345)
Q Consensus 163 ~~~~~~~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGLg~~~~s------~~~q 234 (345)
+.|.+.|++|+. .|.+++|+|+|++. .++++.|||++...+.+ ....+||||||++..+ ++.+
T Consensus 66 ---~~~~~~yg~gs~-~G~~~~D~v~ig~~-----~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~ 136 (317)
T cd05478 66 ---QPLSIQYGTGSM-TGILGYDTVQVGGI-----SDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDN 136 (317)
T ss_pred ---cEEEEEECCceE-EEEEeeeEEEECCE-----EECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHH
Confidence 899999999985 59999999999986 89999999998876654 3468999999987543 4555
Q ss_pred hhhh-----------------------cCCe---------------------------ee-----cCCCCCcEEEcC---
Q 019179 235 MRTT-----------------------IAGN---------------------------QR-----LGVSTPDIVIDS--- 256 (345)
Q Consensus 235 l~~~-----------------------~g~~---------------------------k~-----~~~~~~~~iiDs--- 256 (345)
|.++ +|+. +. .......+||||
T Consensus 137 L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~~~~~~~~iiDTGts 216 (317)
T cd05478 137 MMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVACSGGCQAIVDTGTS 216 (317)
T ss_pred HHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCCCcEEEEEeeEEEECCEEEccCCCCEEEECCCch
Confidence 5321 1221 00 112345799999
Q ss_pred ----------------CC-----ccccccccccccCCCcCeEEEEEcCcEEEeCCcceEEEeCCCeEEEE-EEecC-CCc
Q 019179 257 ----------------DP-----TGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSV-FKGIT-NSV 313 (345)
Q Consensus 257 ----------------~~-----~~~~~~C~~~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~~~~~~C~~-~~~~~-~~~ 313 (345)
.. ..+..+|+... .+|.|+|+|+|++|+|||++|+++. +..|++ |...+ .+.
T Consensus 217 ~~~lp~~~~~~l~~~~~~~~~~~~~~~~~C~~~~---~~P~~~f~f~g~~~~i~~~~y~~~~--~~~C~~~~~~~~~~~~ 291 (317)
T cd05478 217 LLVGPSSDIANIQSDIGASQNQNGEMVVNCSSIS---SMPDVVFTINGVQYPLPPSAYILQD--QGSCTSGFQSMGLGEL 291 (317)
T ss_pred hhhCCHHHHHHHHHHhCCccccCCcEEeCCcCcc---cCCcEEEEECCEEEEECHHHheecC--CCEEeEEEEeCCCCCe
Confidence 11 11223565433 7899999999999999999999875 458987 77654 468
Q ss_pred ceechhhhceeEEEEECCCCEEEEee
Q 019179 314 PIYGNIMQTNFLVGYDIEQQTVSFKP 339 (345)
Q Consensus 314 ~ilG~~fl~~~y~vfD~~~~riGfA~ 339 (345)
||||++|||++|+|||++++|||||+
T Consensus 292 ~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 292 WILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred EEechHHhcceEEEEeCCCCEEeecC
Confidence 99999999999999999999999996
No 4
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-42 Score=329.75 Aligned_cols=259 Identities=42% Similarity=0.766 Sum_probs=208.0
Q ss_pred cccccCCccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCcceecCCCCccccCCCCCCC
Q 019179 82 ADIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSC 161 (345)
Q Consensus 82 ~~~~~~~~~Y~~~i~vGtP~q~~~l~~DTGS~~~wv~~~~C~~~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c 161 (345)
......+++|+++|.||||||+|+|++||||+++||+|..|.. .|..+.++.|||++|+||+.++|.++.|.......|
T Consensus 38 ~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~-~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~~~ 116 (398)
T KOG1339|consen 38 SLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSS-ACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQSCS 116 (398)
T ss_pred ccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccc-cccccCCCccCccccccccccCCCCccccccccCcc
Confidence 3445677899999999999999999999999999999999974 686555556999999999999999999999887744
Q ss_pred CCCCceeEEEeCCCCeEeeeEEEEEEEecCCCCCccccCCeEEEeEEecCCCC-C-CCCceeeecCCCCChhHHHhhhhc
Q 019179 162 SGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLF-N-SKTTGIVGLGGGDISLISQMRTTI 239 (345)
Q Consensus 162 ~~~~~~~~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~-~-~~~~GilGLg~~~~s~~~ql~~~~ 239 (345)
.+..|.|.+.|+||+.++|++++|+|+|++.+ .+.++++.|||+..+.+.+ . .+.+||||||++.+++++|+....
T Consensus 117 ~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~--~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~q~~~~~ 194 (398)
T KOG1339|consen 117 PNSSCPYSIQYGDGSSTSGYLATDTVTFGGTT--SLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPSQLPSFY 194 (398)
T ss_pred cCCcCceEEEeCCCCceeEEEEEEEEEEcccc--ccccccEEEEeeecCccccccccccceEeecCCCCccceeeccccc
Confidence 55599999999998777799999999999842 2377889999999987643 3 578999999999999888864321
Q ss_pred -------------------CCe-----------------------e------------ecC----------CCCCcEEEc
Q 019179 240 -------------------AGN-----------------------Q------------RLG----------VSTPDIVID 255 (345)
Q Consensus 240 -------------------g~~-----------------------k------------~~~----------~~~~~~iiD 255 (345)
+|. . ... ...+++|+|
T Consensus 195 ~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~~~~~~~~~iiD 274 (398)
T KOG1339|consen 195 NAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSLFCTDGGGAIID 274 (398)
T ss_pred CCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCcceEecCCCCEEEE
Confidence 122 0 000 014789999
Q ss_pred C--------------------CC---cc----ccccccccccC-CCcCeEEEEEc-CcEEEeCCcceEEEeCCCeE-EEE
Q 019179 256 S--------------------DP---TG----SLELCYSFNSL-SQVPEVTIHFR-GADVKLSRSNFFVKVSEDIV-CSV 305 (345)
Q Consensus 256 s--------------------~~---~~----~~~~C~~~~~~-~~~P~i~f~f~-g~~~~l~~~~y~~~~~~~~~-C~~ 305 (345)
| .. .. +.+.|+..... ..+|.|+|+|+ |+.|.+++++|+++...+.. |++
T Consensus 275 SGTs~t~lp~~~y~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~P~i~~~f~~g~~~~l~~~~y~~~~~~~~~~Cl~ 354 (398)
T KOG1339|consen 275 SGTSLTYLPTSAYNALREAIGAEVSVVGTDGEYFVPCFSISTSGVKLPDITFHFGGGAVFSLPPKNYLVEVSDGGGVCLA 354 (398)
T ss_pred CCcceeeccHHHHHHHHHHHHhheeccccCCceeeecccCCCCcccCCcEEEEECCCcEEEeCccceEEEECCCCCceee
Confidence 9 11 22 23489877411 13999999999 79999999999998876434 999
Q ss_pred EEecC-C-CcceechhhhceeEEEEECC-CCEEEEee--CCCC
Q 019179 306 FKGIT-N-SVPIYGNIMQTNFLVGYDIE-QQTVSFKP--TDCT 343 (345)
Q Consensus 306 ~~~~~-~-~~~ilG~~fl~~~y~vfD~~-~~riGfA~--~~C~ 343 (345)
+.... . ..||||+.|||+++++||.. ++|||||+ ..|.
T Consensus 355 ~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 355 FFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred EEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 55543 3 48999999999999999999 99999999 7786
No 5
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=3.9e-42 Score=322.22 Aligned_cols=225 Identities=25% Similarity=0.480 Sum_probs=178.1
Q ss_pred cCCccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCC--CCCCCCCCCCCCCCCCCcceecCCCCccccCCCCCCCCC
Q 019179 86 PNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPP--SQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSG 163 (345)
Q Consensus 86 ~~~~~Y~~~i~vGtP~q~~~l~~DTGS~~~wv~~~~C~~--~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~ 163 (345)
+.+.+|+++|.||||+|+++|+|||||+++||+|..|.. ..| ..++.|||++|+|++...
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C--~~~~~y~~~~SsT~~~~~---------------- 63 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIAC--WLHHKYNSSKSSTYVKNG---------------- 63 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccc--cCcCcCCcccCcceeeCC----------------
Confidence 568899999999999999999999999999999999972 356 567899999999999865
Q ss_pred CCceeEEEeCCCCeEeeeEEEEEEEecCCCCCccccCCeEEEeEEecCC-CC-CCCCceeeecCCCCCh------hHHHh
Q 019179 164 VNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGG-LF-NSKTTGIVGLGGGDIS------LISQM 235 (345)
Q Consensus 164 ~~~~~~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s------~~~ql 235 (345)
+.|.+.|++|+. .|.+++|+|+|++. .++++.|||++...+ .| ....+||||||++..+ ++.+|
T Consensus 64 --~~~~i~Yg~G~~-~G~~~~D~v~~g~~-----~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l 135 (325)
T cd05490 64 --TEFAIQYGSGSL-SGYLSQDTVSIGGL-----QVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNI 135 (325)
T ss_pred --cEEEEEECCcEE-EEEEeeeEEEECCE-----EEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHH
Confidence 899999999986 59999999999986 899999999988765 34 4568999999997665 23343
Q ss_pred hhh-------------------------cCCe---------------------------eec-----CCCCCcEEEcCC-
Q 019179 236 RTT-------------------------IAGN---------------------------QRL-----GVSTPDIVIDSD- 257 (345)
Q Consensus 236 ~~~-------------------------~g~~---------------------------k~~-----~~~~~~~iiDs~- 257 (345)
.++ +|+. +.. ......+||||+
T Consensus 136 ~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~~~~~~~aiiDSGT 215 (325)
T cd05490 136 MAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLTLCKGGCEAIVDTGT 215 (325)
T ss_pred HhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCcceEEEEEeeEEEECCeeeecCCCCEEEECCCC
Confidence 221 1211 000 123457999991
Q ss_pred -----------------------CccccccccccccCCCcCeEEEEEcCcEEEeCCcceEEEeCC--CeEEEE-EEecC-
Q 019179 258 -----------------------PTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSE--DIVCSV-FKGIT- 310 (345)
Q Consensus 258 -----------------------~~~~~~~C~~~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~~~--~~~C~~-~~~~~- 310 (345)
...+..+|.... .+|+|+|+|+|++|+|+|++|+++... ...|++ |+..+
T Consensus 216 t~~~~p~~~~~~l~~~~~~~~~~~~~~~~~C~~~~---~~P~i~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~ 292 (325)
T cd05490 216 SLITGPVEEVRALQKAIGAVPLIQGEYMIDCEKIP---TLPVISFSLGGKVYPLTGEDYILKVSQRGTTICLSGFMGLDI 292 (325)
T ss_pred ccccCCHHHHHHHHHHhCCccccCCCEEecccccc---cCCCEEEEECCEEEEEChHHeEEeccCCCCCEEeeEEEECCC
Confidence 012234566443 789999999999999999999987642 357986 76532
Q ss_pred ----CCcceechhhhceeEEEEECCCCEEEEee
Q 019179 311 ----NSVPIYGNIMQTNFLVGYDIEQQTVSFKP 339 (345)
Q Consensus 311 ----~~~~ilG~~fl~~~y~vfD~~~~riGfA~ 339 (345)
...||||++|||++|+|||++++|||||+
T Consensus 293 ~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 293 PPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred CCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 45799999999999999999999999996
No 6
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=3.2e-42 Score=322.82 Aligned_cols=250 Identities=26% Similarity=0.415 Sum_probs=188.9
Q ss_pred ccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCcceecCCCCccccCCCCCCCCCCCcee
Q 019179 89 ANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQY 168 (345)
Q Consensus 89 ~~Y~~~i~vGtP~q~~~l~~DTGS~~~wv~~~~C~~~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~ 168 (345)
+.|+++|.||||+|++.|+|||||+++||+|.+|. .|..+.++.|||++|+|++.++|+++.|.. ...|.++.|.|
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~--~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~--~~~~~~~~~~~ 77 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCK--NCGIHMEPPYNLNNSITSSILYCDCNKCCY--CLSCLNNKCEY 77 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCC--CcCCCCCCCcCcccccccccccCCCccccc--cCcCCCCcCcE
Confidence 57999999999999999999999999999999998 887777889999999999999999999953 34576668999
Q ss_pred EEEeCCCCeEeeeEEEEEEEecCCCCC--ccccCCeEEEeEEecCCCC-CCCCceeeecCCCCChh--------HHHhh-
Q 019179 169 SVSYGDGSFSNGNLATETVTLGSTTGQ--AVALPGITFGCGTNNGGLF-NSKTTGIVGLGGGDISL--------ISQMR- 236 (345)
Q Consensus 169 ~~~Y~~gs~~~G~~~~D~v~~~~~~~~--~~~~~~~~fg~~~~~~~~~-~~~~~GilGLg~~~~s~--------~~ql~- 236 (345)
.+.|++|+.+.|.+++|+|+|++.... .....++.|||+....+.| ....+||||||+...+. ..+..
T Consensus 78 ~i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l~~~~~~ 157 (326)
T cd06096 78 SISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLFTKRPK 157 (326)
T ss_pred EEEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHHHHhccc
Confidence 999999987779999999999976211 0011257899999887665 56789999999976431 11100
Q ss_pred ----hh-------------cCCe-----e--------------------------------ec-------CCCCCcEEEc
Q 019179 237 ----TT-------------IAGN-----Q--------------------------------RL-------GVSTPDIVID 255 (345)
Q Consensus 237 ----~~-------------~g~~-----k--------------------------------~~-------~~~~~~~iiD 255 (345)
.. +|+. + .. ......+|||
T Consensus 158 ~~~~~~FS~~l~~~~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~aivD 237 (326)
T cd06096 158 LKKDKIFSICLSEDGGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNSGNTKGLGMLVD 237 (326)
T ss_pred ccCCceEEEEEcCCCeEEEECccChhhhcccccccccccCCceEEeccCCceEEEEEEEEEEcccccceecccCCCEEEe
Confidence 00 1221 0 00 1234457888
Q ss_pred CCCcccccccccccc-CCCcCeEEEEEc-CcEEEeCCcceEEEeCCCeEEEEEEecCCCcceechhhhceeEEEEECCCC
Q 019179 256 SDPTGSLELCYSFNS-LSQVPEVTIHFR-GADVKLSRSNFFVKVSEDIVCSVFKGITNSVPIYGNIMQTNFLVGYDIEQQ 333 (345)
Q Consensus 256 s~~~~~~~~C~~~~~-~~~~P~i~f~f~-g~~~~l~~~~y~~~~~~~~~C~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~ 333 (345)
|+......+-..... ...+|+|+|+|+ |++|+|+|++|+++..+...|+++... .+.||||++|||++|+|||++++
T Consensus 238 SGTs~~~lp~~~~~~l~~~~P~i~~~f~~g~~~~i~p~~y~~~~~~~~c~~~~~~~-~~~~ILG~~flr~~y~vFD~~~~ 316 (326)
T cd06096 238 SGSTLSHFPEDLYNKINNFFPTITIIFENNLKIDWKPSSYLYKKESFWCKGGEKSV-SNKPILGASFFKNKQIIFDLDNN 316 (326)
T ss_pred CCCCcccCCHHHHHHHHhhcCcEEEEEcCCcEEEECHHHhccccCCceEEEEEecC-CCceEEChHHhcCcEEEEECcCC
Confidence 843322221111100 014599999998 799999999999987655445556554 57899999999999999999999
Q ss_pred EEEEeeCCCC
Q 019179 334 TVSFKPTDCT 343 (345)
Q Consensus 334 riGfA~~~C~ 343 (345)
|||||+++|.
T Consensus 317 riGfa~~~C~ 326 (326)
T cd06096 317 RIGFVESNCP 326 (326)
T ss_pred EEeeEcCCCC
Confidence 9999999995
No 7
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=1.7e-41 Score=316.74 Aligned_cols=220 Identities=27% Similarity=0.468 Sum_probs=174.5
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCcceecCCCCccccCCCCCCCCCCCceeEE
Q 019179 91 YLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYSV 170 (345)
Q Consensus 91 Y~~~i~vGtP~q~~~l~~DTGS~~~wv~~~~C~~~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~~~ 170 (345)
|+++|.||||+|+++|+|||||+++||+|..|....| ..++.|||++|+|++..+ +.|.+
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C--~~~~~y~~~~SsT~~~~~------------------~~~~i 60 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQAC--TKHNRFQPSESSTYVSNG------------------EAFSI 60 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCccc--CccceECCCCCcccccCC------------------cEEEE
Confidence 8999999999999999999999999999999985567 567899999999999887 99999
Q ss_pred EeCCCCeEeeeEEEEEEEecCCCCCccccCCeEEEeEEecCC-CC-CCCCceeeecCCCCChh------HHHhhhh----
Q 019179 171 SYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGG-LF-NSKTTGIVGLGGGDISL------ISQMRTT---- 238 (345)
Q Consensus 171 ~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s~------~~ql~~~---- 238 (345)
.|++|+. .|.+++|+|+|++. .++++.|||+....+ .| ....+||||||++..+. +.+|.++
T Consensus 61 ~Yg~g~~-~G~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~ 134 (316)
T cd05486 61 QYGTGSL-TGIIGIDQVTVEGI-----TVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVE 134 (316)
T ss_pred EeCCcEE-EEEeeecEEEECCE-----EEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCC
Confidence 9999986 59999999999986 899999999887665 34 46789999999976552 3333211
Q ss_pred ---------------------cCCe---------------------------eec-----CCCCCcEEEcCCC-------
Q 019179 239 ---------------------IAGN---------------------------QRL-----GVSTPDIVIDSDP------- 258 (345)
Q Consensus 239 ---------------------~g~~---------------------------k~~-----~~~~~~~iiDs~~------- 258 (345)
+|+. +.. ......+||||+.
T Consensus 135 ~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~~~~~~~aiiDTGTs~~~lP~ 214 (316)
T cd05486 135 LPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIFCSDGCQAIVDTGTSLITGPS 214 (316)
T ss_pred CCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCCceEEEEEeeEEEEecceEecCCCCEEEECCCcchhhcCH
Confidence 1211 001 1233579999910
Q ss_pred ----------------ccccccccccccCCCcCeEEEEEcCcEEEeCCcceEEEe--CCCeEEEE-EEecC-----CCcc
Q 019179 259 ----------------TGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKV--SEDIVCSV-FKGIT-----NSVP 314 (345)
Q Consensus 259 ----------------~~~~~~C~~~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~--~~~~~C~~-~~~~~-----~~~~ 314 (345)
..+..+|.... .+|+|+|+|+|++++|+|++|++.. .++..|++ |+..+ .+.|
T Consensus 215 ~~~~~l~~~~~~~~~~~~~~~~C~~~~---~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ 291 (316)
T cd05486 215 GDIKQLQNYIGATATDGEYGVDCSTLS---LMPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPLW 291 (316)
T ss_pred HHHHHHHHHhCCcccCCcEEEeccccc---cCCCEEEEECCEEEEeCHHHeEEecccCCCCEEeeEEEECCCCCCCCCeE
Confidence 11233565432 7999999999999999999999875 23458986 76532 3579
Q ss_pred eechhhhceeEEEEECCCCEEEEee
Q 019179 315 IYGNIMQTNFLVGYDIEQQTVSFKP 339 (345)
Q Consensus 315 ilG~~fl~~~y~vfD~~~~riGfA~ 339 (345)
|||+.|||++|+|||++++|||||+
T Consensus 292 ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 292 ILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred EEchHHhcceEEEEeCCCCEeeccC
Confidence 9999999999999999999999996
No 8
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=3.7e-41 Score=314.44 Aligned_cols=228 Identities=28% Similarity=0.424 Sum_probs=180.5
Q ss_pred ccccCCccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC-CCCCCCCCCCCCCCCCCCcceecCCCCccccCCCCCCC
Q 019179 83 DIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCP-PSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSC 161 (345)
Q Consensus 83 ~~~~~~~~Y~~~i~vGtP~q~~~l~~DTGS~~~wv~~~~C~-~~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c 161 (345)
+.++.+.+|+++|.||||+|+++|+|||||+++||+|..|. ...| ..++.|||++|+|++..+
T Consensus 3 l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C--~~~~~y~~~~SsT~~~~~-------------- 66 (317)
T cd06098 3 LKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIAC--YFHSKYKSSKSSTYKKNG-------------- 66 (317)
T ss_pred ccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccc--cccCcCCcccCCCcccCC--------------
Confidence 34677899999999999999999999999999999999996 2468 467899999999999876
Q ss_pred CCCCceeEEEeCCCCeEeeeEEEEEEEecCCCCCccccCCeEEEeEEecCC-CC-CCCCceeeecCCCCChh------HH
Q 019179 162 SGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGG-LF-NSKTTGIVGLGGGDISL------IS 233 (345)
Q Consensus 162 ~~~~~~~~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s~------~~ 233 (345)
..+.+.|++|+.. |.+++|+|+|++. .++++.||+++...+ .| ....+||||||++..+. +.
T Consensus 67 ----~~~~i~Yg~G~~~-G~~~~D~v~ig~~-----~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~ 136 (317)
T cd06098 67 ----TSASIQYGTGSIS-GFFSQDSVTVGDL-----VVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWY 136 (317)
T ss_pred ----CEEEEEcCCceEE-EEEEeeEEEECCE-----EECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHH
Confidence 8899999999865 9999999999986 899999999987655 34 56789999999976542 22
Q ss_pred Hhhhh-------------------------cCCe---------------------------eec------CCCCCcEEEc
Q 019179 234 QMRTT-------------------------IAGN---------------------------QRL------GVSTPDIVID 255 (345)
Q Consensus 234 ql~~~-------------------------~g~~---------------------------k~~------~~~~~~~iiD 255 (345)
+|.++ +|+. +.. ......+|||
T Consensus 137 ~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aivD 216 (317)
T cd06098 137 NMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAIAD 216 (317)
T ss_pred HHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCcCcEEEEEeCeEEECCEEeeecCCCcEEEEe
Confidence 22111 1211 000 1123568999
Q ss_pred CCC------------ccccccccccccCCCcCeEEEEEcCcEEEeCCcceEEEeCC--CeEEEE-EEecC-----CCcce
Q 019179 256 SDP------------TGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSE--DIVCSV-FKGIT-----NSVPI 315 (345)
Q Consensus 256 s~~------------~~~~~~C~~~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~~~--~~~C~~-~~~~~-----~~~~i 315 (345)
|+. ..+..+|+... .+|+|+|+|+|++|+|+|++|+++..+ ...|++ |+..+ ...||
T Consensus 217 TGTs~~~lP~~~~~~i~~~~~C~~~~---~~P~i~f~f~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~I 293 (317)
T cd06098 217 SGTSLLAGPTTIVTQINSAVDCNSLS---SMPNVSFTIGGKTFELTPEQYILKVGEGAAAQCISGFTALDVPPPRGPLWI 293 (317)
T ss_pred cCCcceeCCHHHHHhhhccCCccccc---cCCcEEEEECCEEEEEChHHeEEeecCCCCCEEeceEEECCCCCCCCCeEE
Confidence 921 12345787653 799999999999999999999987643 358986 66432 35799
Q ss_pred echhhhceeEEEEECCCCEEEEee
Q 019179 316 YGNIMQTNFLVGYDIEQQTVSFKP 339 (345)
Q Consensus 316 lG~~fl~~~y~vfD~~~~riGfA~ 339 (345)
||+.|||++|+|||++++|||||+
T Consensus 294 lGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 294 LGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred echHHhcccEEEEeCCCCEEeecC
Confidence 999999999999999999999996
No 9
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=9.4e-41 Score=322.20 Aligned_cols=231 Identities=21% Similarity=0.378 Sum_probs=181.5
Q ss_pred cccccccCCccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCcceecCCCCccccCCCCC
Q 019179 80 SQADIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQK 159 (345)
Q Consensus 80 ~~~~~~~~~~~Y~~~i~vGtP~q~~~l~~DTGS~~~wv~~~~C~~~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~ 159 (345)
..++.+..+.+|+++|.||||+|++.|+|||||+++||+|..|....| +.++.|||++|+|++..+
T Consensus 129 ~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C--~~~~~yd~s~SsT~~~~~------------ 194 (453)
T PTZ00147 129 NVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGC--ETKNLYDSSKSKTYEKDG------------ 194 (453)
T ss_pred eeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccc--cCCCccCCccCcceEECC------------
Confidence 345557788999999999999999999999999999999999985556 677899999999999887
Q ss_pred CCCCCCceeEEEeCCCCeEeeeEEEEEEEecCCCCCccccCCeEEEeEEecCCC---C-CCCCceeeecCCCCCh-----
Q 019179 160 SCSGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGL---F-NSKTTGIVGLGGGDIS----- 230 (345)
Q Consensus 160 ~c~~~~~~~~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~---~-~~~~~GilGLg~~~~s----- 230 (345)
+.|.+.|++|+.. |.+++|+|+|++. +++ ..|+++....+. + ....|||||||++..+
T Consensus 195 ------~~f~i~Yg~Gsvs-G~~~~DtVtiG~~-----~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~ 261 (453)
T PTZ00147 195 ------TKVEMNYVSGTVS-GFFSKDLVTIGNL-----SVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVD 261 (453)
T ss_pred ------CEEEEEeCCCCEE-EEEEEEEEEECCE-----EEE-EEEEEEEeccCcccccccccccceecccCCccccccCC
Confidence 9999999999865 9999999999986 777 579988876541 2 3578999999998764
Q ss_pred -hHHHhhhh-----------------------cCCe------------e----------ec------CCCCCcEEEcCCC
Q 019179 231 -LISQMRTT-----------------------IAGN------------Q----------RL------GVSTPDIVIDSDP 258 (345)
Q Consensus 231 -~~~ql~~~-----------------------~g~~------------k----------~~------~~~~~~~iiDs~~ 258 (345)
++.+|..+ +|+. . .. ......+||||+.
T Consensus 262 p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~~~~W~V~l~~~vg~~~~~~~~aIiDSGT 341 (453)
T PTZ00147 262 PYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNHDLYWQVDLDVHFGNVSSEKANVIVDSGT 341 (453)
T ss_pred CHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCCCceEEEEEEEEECCEecCceeEEECCCC
Confidence 23344321 2222 0 00 1123568999910
Q ss_pred -------------------------ccccccccccccCCCcCeEEEEEcCcEEEeCCcceEEEeC--CCeEEEE-EEecC
Q 019179 259 -------------------------TGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVS--EDIVCSV-FKGIT 310 (345)
Q Consensus 259 -------------------------~~~~~~C~~~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~~--~~~~C~~-~~~~~ 310 (345)
..+..+|+. ..+|+|+|+|+|.+++|+|++|+.+.. ....|++ |++.+
T Consensus 342 sli~lP~~~~~ai~~~l~~~~~~~~~~y~~~C~~----~~lP~~~f~f~g~~~~L~p~~yi~~~~~~~~~~C~~~i~~~~ 417 (453)
T PTZ00147 342 SVITVPTEFLNKFVESLDVFKVPFLPLYVTTCNN----TKLPTLEFRSPNKVYTLEPEYYLQPIEDIGSALCMLNIIPID 417 (453)
T ss_pred chhcCCHHHHHHHHHHhCCeecCCCCeEEEeCCC----CCCCeEEEEECCEEEEECHHHheeccccCCCcEEEEEEEECC
Confidence 012235664 278999999999999999999997643 2357986 87754
Q ss_pred --CCcceechhhhceeEEEEECCCCEEEEeeCC
Q 019179 311 --NSVPIYGNIMQTNFLVGYDIEQQTVSFKPTD 341 (345)
Q Consensus 311 --~~~~ilG~~fl~~~y~vfD~~~~riGfA~~~ 341 (345)
.+.||||++|||++|+|||++++|||||+++
T Consensus 418 ~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 418 LEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred CCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 4589999999999999999999999999987
No 10
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=2.1e-40 Score=309.56 Aligned_cols=222 Identities=26% Similarity=0.485 Sum_probs=176.7
Q ss_pred CccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCcceecCCCCccccCCCCCCCCCCCce
Q 019179 88 NANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQ 167 (345)
Q Consensus 88 ~~~Y~~~i~vGtP~q~~~l~~DTGS~~~wv~~~~C~~~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~ 167 (345)
|..|+++|.||||||++.|+|||||+++||+|..|....| ..++.|||++|+|++... |.
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C--~~~~~f~~~~SsT~~~~~------------------~~ 60 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQAC--TNHTKFNPSQSSTYSTNG------------------ET 60 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccc--cccCCCCcccCCCceECC------------------cE
Confidence 4679999999999999999999999999999999985567 567899999999999876 99
Q ss_pred eEEEeCCCCeEeeeEEEEEEEecCCCCCccccCCeEEEeEEecCCC-C-CCCCceeeecCCCCC------hhHHHhhhh-
Q 019179 168 YSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGL-F-NSKTTGIVGLGGGDI------SLISQMRTT- 238 (345)
Q Consensus 168 ~~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GilGLg~~~~------s~~~ql~~~- 238 (345)
|.+.|++|+.. |.+++|+|+|++. +++++.|||++...+. + ....+||||||++.. +++.||.++
T Consensus 61 ~~~~Yg~Gs~~-G~~~~D~i~~g~~-----~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g 134 (318)
T cd05477 61 FSLQYGSGSLT-GIFGYDTVTVQGI-----IITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQN 134 (318)
T ss_pred EEEEECCcEEE-EEEEeeEEEECCE-----EEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcC
Confidence 99999999865 9999999999986 8999999999987653 3 456899999998643 356665432
Q ss_pred -----------------------cCCe---------------------------eec------CCCCCcEEEcCC-----
Q 019179 239 -----------------------IAGN---------------------------QRL------GVSTPDIVIDSD----- 257 (345)
Q Consensus 239 -----------------------~g~~---------------------------k~~------~~~~~~~iiDs~----- 257 (345)
+|+. +.. ......+||||+
T Consensus 135 ~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~ 214 (318)
T cd05477 135 LLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLT 214 (318)
T ss_pred CcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCCceEEEEEeeEEEECCEEecccCCCceeeECCCCccEE
Confidence 1111 000 112356899990
Q ss_pred -------------------CccccccccccccCCCcCeEEEEEcCcEEEeCCcceEEEeCCCeEEEE-EEecC------C
Q 019179 258 -------------------PTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSV-FKGIT------N 311 (345)
Q Consensus 258 -------------------~~~~~~~C~~~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~~~~~~C~~-~~~~~------~ 311 (345)
...+..+|.... .+|+|+|+|+|+++.||+++|++.. ...|+. |.+.. .
T Consensus 215 lP~~~~~~l~~~~~~~~~~~~~~~~~C~~~~---~~p~l~~~f~g~~~~v~~~~y~~~~--~~~C~~~i~~~~~~~~~~~ 289 (318)
T cd05477 215 APQQVMSTLMQSIGAQQDQYGQYVVNCNNIQ---NLPTLTFTINGVSFPLPPSAYILQN--NGYCTVGIEPTYLPSQNGQ 289 (318)
T ss_pred CCHHHHHHHHHHhCCccccCCCEEEeCCccc---cCCcEEEEECCEEEEECHHHeEecC--CCeEEEEEEecccCCCCCC
Confidence 111233455432 6899999999999999999999875 347974 76431 2
Q ss_pred CcceechhhhceeEEEEECCCCEEEEeeC
Q 019179 312 SVPIYGNIMQTNFLVGYDIEQQTVSFKPT 340 (345)
Q Consensus 312 ~~~ilG~~fl~~~y~vfD~~~~riGfA~~ 340 (345)
..||||+.|||++|++||++++|||||++
T Consensus 290 ~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 290 PLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred ceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 47999999999999999999999999985
No 11
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=4.4e-40 Score=316.96 Aligned_cols=232 Identities=20% Similarity=0.406 Sum_probs=180.4
Q ss_pred CcccccccCCccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCcceecCCCCccccCCCC
Q 019179 79 ASQADIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQ 158 (345)
Q Consensus 79 ~~~~~~~~~~~~Y~~~i~vGtP~q~~~l~~DTGS~~~wv~~~~C~~~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~ 158 (345)
....+.++.+.+|+++|.||||+|+++|+|||||+++||+|..|....| +.++.|||++|+|++..+
T Consensus 127 ~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C--~~~~~yd~s~SsT~~~~~----------- 193 (450)
T PTZ00013 127 DVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGC--SIKNLYDSSKSKSYEKDG----------- 193 (450)
T ss_pred CceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCcccc--ccCCCccCccCcccccCC-----------
Confidence 3345557788899999999999999999999999999999999985567 577899999999999887
Q ss_pred CCCCCCCceeEEEeCCCCeEeeeEEEEEEEecCCCCCccccCCeEEEeEEecCC---CC-CCCCceeeecCCCCCh----
Q 019179 159 KSCSGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGG---LF-NSKTTGIVGLGGGDIS---- 230 (345)
Q Consensus 159 ~~c~~~~~~~~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~---~~-~~~~~GilGLg~~~~s---- 230 (345)
+.|.+.|++|++ .|.+++|+|+|++. +++ ..|+++..... .+ ...+|||||||++..+
T Consensus 194 -------~~~~i~YG~Gsv-~G~~~~Dtv~iG~~-----~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~ 259 (450)
T PTZ00013 194 -------TKVDITYGSGTV-KGFFSKDLVTLGHL-----SMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSI 259 (450)
T ss_pred -------cEEEEEECCceE-EEEEEEEEEEECCE-----EEc-cEEEEEEeccccccceecccccceecccCCccccccC
Confidence 999999999985 59999999999986 676 57888876542 13 3568999999998664
Q ss_pred --hHHHhhhh-----------------------cCCe------------ee----------c------CCCCCcEEEcCC
Q 019179 231 --LISQMRTT-----------------------IAGN------------QR----------L------GVSTPDIVIDSD 257 (345)
Q Consensus 231 --~~~ql~~~-----------------------~g~~------------k~----------~------~~~~~~~iiDs~ 257 (345)
++.+|..+ +|+. .. . ......+||||+
T Consensus 260 ~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~~~yW~I~l~v~~G~~~~~~~~aIlDSG 339 (450)
T PTZ00013 260 DPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLDVHFGKQTMQKANVIVDSG 339 (450)
T ss_pred CCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCcCceEEEEEEEEECceeccccceEECCC
Confidence 34444321 2222 00 0 012346899991
Q ss_pred C-------------------------ccccccccccccCCCcCeEEEEEcCcEEEeCCcceEEEe--CCCeEEEE-EEec
Q 019179 258 P-------------------------TGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKV--SEDIVCSV-FKGI 309 (345)
Q Consensus 258 ~-------------------------~~~~~~C~~~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~--~~~~~C~~-~~~~ 309 (345)
. ..+..+|+. ..+|+|+|+|+|.+++|+|++|+.+. .++..|+. +.+.
T Consensus 340 TSli~lP~~~~~~i~~~l~~~~~~~~~~y~~~C~~----~~lP~i~F~~~g~~~~L~p~~Yi~~~~~~~~~~C~~~i~~~ 415 (450)
T PTZ00013 340 TTTITAPSEFLNKFFANLNVIKVPFLPFYVTTCDN----KEMPTLEFKSANNTYTLEPEYYMNPLLDVDDTLCMITMLPV 415 (450)
T ss_pred CccccCCHHHHHHHHHHhCCeecCCCCeEEeecCC----CCCCeEEEEECCEEEEECHHHheehhccCCCCeeEEEEEEC
Confidence 0 012235654 27899999999999999999998753 23458976 7665
Q ss_pred C--CCcceechhhhceeEEEEECCCCEEEEeeCC
Q 019179 310 T--NSVPIYGNIMQTNFLVGYDIEQQTVSFKPTD 341 (345)
Q Consensus 310 ~--~~~~ilG~~fl~~~y~vfD~~~~riGfA~~~ 341 (345)
+ .+.||||++|||++|+|||++++|||||+++
T Consensus 416 ~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 416 DIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred CCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 4 4589999999999999999999999999985
No 12
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=2.7e-40 Score=310.04 Aligned_cols=229 Identities=28% Similarity=0.517 Sum_probs=179.7
Q ss_pred cccccCCccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCC--CCCCCCCCCCCCCCCCCcceecCCCCccccCCCCC
Q 019179 82 ADIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPP--SQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQK 159 (345)
Q Consensus 82 ~~~~~~~~~Y~~~i~vGtP~q~~~l~~DTGS~~~wv~~~~C~~--~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~ 159 (345)
.+.++.+..|+++|.||||+|++.|++||||+++||+|..|.. ..| ..++.|||++|+|++..+
T Consensus 3 ~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c--~~~~~y~~~~Sst~~~~~------------ 68 (329)
T cd05485 3 PLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIAC--LLHNKYDSTKSSTYKKNG------------ 68 (329)
T ss_pred cceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccc--cCCCeECCcCCCCeEECC------------
Confidence 3456788999999999999999999999999999999999962 246 457889999999999887
Q ss_pred CCCCCCceeEEEeCCCCeEeeeEEEEEEEecCCCCCccccCCeEEEeEEecCC-CC-CCCCceeeecCCCCChh------
Q 019179 160 SCSGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGG-LF-NSKTTGIVGLGGGDISL------ 231 (345)
Q Consensus 160 ~c~~~~~~~~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s~------ 231 (345)
|.|.+.|++|+. .|.+++|+++|++. .++++.||++....+ .| ....+||||||++..+.
T Consensus 69 ------~~~~i~Y~~g~~-~G~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~ 136 (329)
T cd05485 69 ------TEFAIQYGSGSL-SGFLSTDTVSVGGV-----SVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPV 136 (329)
T ss_pred ------eEEEEEECCceE-EEEEecCcEEECCE-----EECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCH
Confidence 999999999985 59999999999986 889999999987765 34 46789999999987652
Q ss_pred HHHhhhh-------------------------cCCe----------------------e-----e----cCCCCCcEEEc
Q 019179 232 ISQMRTT-------------------------IAGN----------------------Q-----R----LGVSTPDIVID 255 (345)
Q Consensus 232 ~~ql~~~-------------------------~g~~----------------------k-----~----~~~~~~~~iiD 255 (345)
+.||.++ +|+. + . .......+|||
T Consensus 137 ~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~~~~~~~~iiD 216 (329)
T cd05485 137 FYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEFCSGGCQAIAD 216 (329)
T ss_pred HHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCCceEEEEEeeEEEECCeeecCCCcEEEEc
Confidence 3333221 1111 0 0 01233469999
Q ss_pred C-------------------CC-----ccccccccccccCCCcCeEEEEEcCcEEEeCCcceEEEeCC--CeEEEE-EEe
Q 019179 256 S-------------------DP-----TGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSE--DIVCSV-FKG 308 (345)
Q Consensus 256 s-------------------~~-----~~~~~~C~~~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~~~--~~~C~~-~~~ 308 (345)
| .. ..+..+|.... .+|+|+|+|+|+++.|+|++|+++... ...|++ |+.
T Consensus 217 SGtt~~~lP~~~~~~l~~~~~~~~~~~~~~~~~C~~~~---~~p~i~f~fgg~~~~i~~~~yi~~~~~~~~~~C~~~~~~ 293 (329)
T cd05485 217 TGTSLIAGPVDEIEKLNNAIGAKPIIGGEYMVNCSAIP---SLPDITFVLGGKSFSLTGKDYVLKVTQMGQTICLSGFMG 293 (329)
T ss_pred cCCcceeCCHHHHHHHHHHhCCccccCCcEEEeccccc---cCCcEEEEECCEEeEEChHHeEEEecCCCCCEEeeeEEE
Confidence 9 11 11233454332 689999999999999999999998653 458986 764
Q ss_pred cC-----CCcceechhhhceeEEEEECCCCEEEEee
Q 019179 309 IT-----NSVPIYGNIMQTNFLVGYDIEQQTVSFKP 339 (345)
Q Consensus 309 ~~-----~~~~ilG~~fl~~~y~vfD~~~~riGfA~ 339 (345)
.+ .+.||||+.|||++|+|||++++|||||+
T Consensus 294 ~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 294 IDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred CcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 32 35799999999999999999999999985
No 13
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=5.1e-40 Score=307.16 Aligned_cols=225 Identities=27% Similarity=0.495 Sum_probs=176.9
Q ss_pred cccCCccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCcceecCCCCccccCCCCCCCCC
Q 019179 84 IIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSG 163 (345)
Q Consensus 84 ~~~~~~~Y~~~i~vGtP~q~~~l~~DTGS~~~wv~~~~C~~~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~ 163 (345)
.++.+..|+++|.||||+|++.|+|||||+++||+|..|....| ..++.|++++|+|++...
T Consensus 4 ~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C--~~~~~y~~~~Sst~~~~~---------------- 65 (320)
T cd05488 4 TNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIAC--FLHSKYDSSASSTYKANG---------------- 65 (320)
T ss_pred cccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCccc--CCcceECCCCCcceeeCC----------------
Confidence 35578899999999999999999999999999999999986667 466899999999999876
Q ss_pred CCceeEEEeCCCCeEeeeEEEEEEEecCCCCCccccCCeEEEeEEecCCC-C-CCCCceeeecCCCCChhHH------Hh
Q 019179 164 VNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGL-F-NSKTTGIVGLGGGDISLIS------QM 235 (345)
Q Consensus 164 ~~~~~~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GilGLg~~~~s~~~------ql 235 (345)
|.|.+.|++|+. .|.+++|+|+|++. .++++.|||++...+. + ....+||||||++..+... +|
T Consensus 66 --~~~~~~y~~g~~-~G~~~~D~v~ig~~-----~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l 137 (320)
T cd05488 66 --TEFKIQYGSGSL-EGFVSQDTLSIGDL-----TIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNM 137 (320)
T ss_pred --CEEEEEECCceE-EEEEEEeEEEECCE-----EECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHH
Confidence 899999999986 59999999999986 8899999999877653 3 3568999999998765321 22
Q ss_pred hhh-----------------------cCCe---------------------------ee----cCCCCCcEEEcC-----
Q 019179 236 RTT-----------------------IAGN---------------------------QR----LGVSTPDIVIDS----- 256 (345)
Q Consensus 236 ~~~-----------------------~g~~---------------------------k~----~~~~~~~~iiDs----- 256 (345)
.++ +|+. +. .......++|||
T Consensus 138 ~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~~~~~~ivDSGtt~~ 217 (320)
T cd05488 138 INQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELELENTGAAIDTGTSLI 217 (320)
T ss_pred HhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCcCcEEEEEeCeEEECCEEeccCCCeEEEcCCcccc
Confidence 110 2221 00 112345789999
Q ss_pred --------------CCc-----cccccccccccCCCcCeEEEEEcCcEEEeCCcceEEEeCCCeEEEE-EEecC-----C
Q 019179 257 --------------DPT-----GSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSV-FKGIT-----N 311 (345)
Q Consensus 257 --------------~~~-----~~~~~C~~~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~~~~~~C~~-~~~~~-----~ 311 (345)
... .+..+|.... .+|.|+|+|+|++++|||++|+++.. ..|++ +...+ .
T Consensus 218 ~lp~~~~~~l~~~~~~~~~~~~~~~~~C~~~~---~~P~i~f~f~g~~~~i~~~~y~~~~~--g~C~~~~~~~~~~~~~~ 292 (320)
T cd05488 218 ALPSDLAEMLNAEIGAKKSWNGQYTVDCSKVD---SLPDLTFNFDGYNFTLGPFDYTLEVS--GSCISAFTGMDFPEPVG 292 (320)
T ss_pred cCCHHHHHHHHHHhCCccccCCcEEeeccccc---cCCCEEEEECCEEEEECHHHheecCC--CeEEEEEEECcCCCCCC
Confidence 111 1123455432 68999999999999999999998643 37987 65432 3
Q ss_pred CcceechhhhceeEEEEECCCCEEEEee
Q 019179 312 SVPIYGNIMQTNFLVGYDIEQQTVSFKP 339 (345)
Q Consensus 312 ~~~ilG~~fl~~~y~vfD~~~~riGfA~ 339 (345)
..||||+.|||++|+|||++++|||||+
T Consensus 293 ~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 293 PLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred CeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 4799999999999999999999999996
No 14
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=8.2e-40 Score=306.56 Aligned_cols=226 Identities=26% Similarity=0.497 Sum_probs=176.0
Q ss_pred ccCCccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCC--CCCCCCCCCCCCCCCCCcceecCCCCccccCCCCCCCC
Q 019179 85 IPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPP--SQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCS 162 (345)
Q Consensus 85 ~~~~~~Y~~~i~vGtP~q~~~l~~DTGS~~~wv~~~~C~~--~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~ 162 (345)
++.+..|+++|.||||+|+++|+|||||+++||+|..|.. ..| ..++.|||++|+|++..+
T Consensus 3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c--~~~~~y~~~~SsT~~~~~--------------- 65 (326)
T cd05487 3 NYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTAC--VTHNLYDASDSSTYKENG--------------- 65 (326)
T ss_pred ccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhh--cccCcCCCCCCeeeeECC---------------
Confidence 4668899999999999999999999999999999998873 245 577899999999999877
Q ss_pred CCCceeEEEeCCCCeEeeeEEEEEEEecCCCCCccccCCeEEEeEEecCC-CC-CCCCceeeecCCCCCh------hHHH
Q 019179 163 GVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGG-LF-NSKTTGIVGLGGGDIS------LISQ 234 (345)
Q Consensus 163 ~~~~~~~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s------~~~q 234 (345)
|.|.+.|++|++ .|.+++|+|+|++. .+ .+.||++..... .| ....+||||||++..+ ++.+
T Consensus 66 ---~~~~~~Yg~g~~-~G~~~~D~v~~g~~-----~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~ 135 (326)
T cd05487 66 ---TEFTIHYASGTV-KGFLSQDIVTVGGI-----PV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDN 135 (326)
T ss_pred ---EEEEEEeCCceE-EEEEeeeEEEECCE-----Ee-eEEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHH
Confidence 999999999985 59999999999985 55 478999987643 33 4568999999997654 2222
Q ss_pred hhhh-------------------------cCCe---------------------------ee-----cCCCCCcEEEcCC
Q 019179 235 MRTT-------------------------IAGN---------------------------QR-----LGVSTPDIVIDSD 257 (345)
Q Consensus 235 l~~~-------------------------~g~~---------------------------k~-----~~~~~~~~iiDs~ 257 (345)
|..+ +|+. +. .......+||||+
T Consensus 136 L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~~~~~~~aiiDSG 215 (326)
T cd05487 136 IMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLLCEDGCTAVVDTG 215 (326)
T ss_pred HHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCcCceEEEEecEEEECCEEEecCCCCEEEECCC
Confidence 2211 1211 00 1123357999991
Q ss_pred -----------------------CccccccccccccCCCcCeEEEEEcCcEEEeCCcceEEEeCC--CeEEEE-EEecC-
Q 019179 258 -----------------------PTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSE--DIVCSV-FKGIT- 310 (345)
Q Consensus 258 -----------------------~~~~~~~C~~~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~~~--~~~C~~-~~~~~- 310 (345)
...+..+|.... .+|+|+|+|+|.+++|++++|+++..+ +..|+. |+..+
T Consensus 216 ts~~~lP~~~~~~l~~~~~~~~~~~~y~~~C~~~~---~~P~i~f~fgg~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~ 292 (326)
T cd05487 216 ASFISGPTSSISKLMEALGAKERLGDYVVKCNEVP---TLPDISFHLGGKEYTLSSSDYVLQDSDFSDKLCTVAFHAMDI 292 (326)
T ss_pred ccchhCcHHHHHHHHHHhCCcccCCCEEEeccccC---CCCCEEEEECCEEEEeCHHHhEEeccCCCCCEEEEEEEeCCC
Confidence 112234565543 689999999999999999999998643 568976 76532
Q ss_pred ----CCcceechhhhceeEEEEECCCCEEEEeeC
Q 019179 311 ----NSVPIYGNIMQTNFLVGYDIEQQTVSFKPT 340 (345)
Q Consensus 311 ----~~~~ilG~~fl~~~y~vfD~~~~riGfA~~ 340 (345)
.+.||||+.|||++|+|||++++|||||++
T Consensus 293 ~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 293 PPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred CCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 357999999999999999999999999985
No 15
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=9.9e-39 Score=295.82 Aligned_cols=205 Identities=42% Similarity=0.874 Sum_probs=164.1
Q ss_pred cEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCcceecCCCCccccCCCCCCCCCCCceeE
Q 019179 90 NYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYS 169 (345)
Q Consensus 90 ~Y~~~i~vGtP~q~~~l~~DTGS~~~wv~~~~C~~~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~~ 169 (345)
+|+++|.||||||++.|+|||||+++||+|.+ | |.|.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~-----c--------------------------------------~~~~ 37 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQP-----C--------------------------------------CLYQ 37 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCC-----C--------------------------------------Ceee
Confidence 59999999999999999999999999997753 3 6789
Q ss_pred EEeCCCCeEeeeEEEEEEEecCCCCCccccCCeEEEeEEecCCCCCCCCceeeecCCCCChhHHHhhhh-----------
Q 019179 170 VSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGGGDISLISQMRTT----------- 238 (345)
Q Consensus 170 ~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~----------- 238 (345)
+.|++|+.++|.+++|+|+|++. ..++++.|||+...++.+ ...+||||||++..+++.|+...
T Consensus 38 i~Yg~Gs~~~G~~~~D~v~ig~~----~~~~~~~Fg~~~~~~~~~-~~~~GilGLg~~~~s~~~ql~~~~~~~FS~~L~~ 112 (299)
T cd05472 38 VSYGDGSYTTGDLATDTLTLGSS----DVVPGFAFGCGHDNEGLF-GGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPD 112 (299)
T ss_pred eEeCCCceEEEEEEEEEEEeCCC----CccCCEEEECCccCCCcc-CCCCEEEECCCCcchHHHHhhHhhcCceEEEccC
Confidence 99999998779999999999974 167899999999877655 47899999999999998886432
Q ss_pred ----------cCCe-------------e----------------e----cC-----CCCCcEEEcC--------------
Q 019179 239 ----------IAGN-------------Q----------------R----LG-----VSTPDIVIDS-------------- 256 (345)
Q Consensus 239 ----------~g~~-------------k----------------~----~~-----~~~~~~iiDs-------------- 256 (345)
+|+. + . .. .....+||||
T Consensus 113 ~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~~ 192 (299)
T cd05472 113 RSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAA 192 (299)
T ss_pred CCCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHHH
Confidence 1111 0 0 00 1235799999
Q ss_pred ---------C-----Ccc-ccccccccccC--CCcCeEEEEEc-CcEEEeCCcceEEEe-CCCeEEEEEEecC--CCcce
Q 019179 257 ---------D-----PTG-SLELCYSFNSL--SQVPEVTIHFR-GADVKLSRSNFFVKV-SEDIVCSVFKGIT--NSVPI 315 (345)
Q Consensus 257 ---------~-----~~~-~~~~C~~~~~~--~~~P~i~f~f~-g~~~~l~~~~y~~~~-~~~~~C~~~~~~~--~~~~i 315 (345)
. ... .+..|+..++. ..+|+|+|+|+ |++++|+|++|++.. ..+..|+++...+ ...||
T Consensus 193 l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~~~C~~~~~~~~~~~~~i 272 (299)
T cd05472 193 LRDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDDSSQVCLAFAGTSDDGGLSI 272 (299)
T ss_pred HHHHHHHHhccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecCCCCEEEEEeCCCCCCCCEE
Confidence 0 001 12359876432 37999999998 799999999999843 3456899877653 46799
Q ss_pred echhhhceeEEEEECCCCEEEEeeCCC
Q 019179 316 YGNIMQTNFLVGYDIEQQTVSFKPTDC 342 (345)
Q Consensus 316 lG~~fl~~~y~vfD~~~~riGfA~~~C 342 (345)
||+.|||++|+|||++++|||||+++|
T Consensus 273 lG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 273 IGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred EchHHccceEEEEECCCCEEeEecCCC
Confidence 999999999999999999999999999
No 16
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1.7e-38 Score=290.37 Aligned_cols=209 Identities=33% Similarity=0.617 Sum_probs=162.8
Q ss_pred ccEEEEEEeCCCCceEEEEEEcCCCceeEeCC-CCCCCCCCCCCCCCCCCCCCCcceecCCCCccccCCCCCCCCCCCce
Q 019179 89 ANYLIRISIGTPPTERLAVADTGSDLIWTQCE-PCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQ 167 (345)
Q Consensus 89 ~~Y~~~i~vGtP~q~~~l~~DTGS~~~wv~~~-~C~~~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~ 167 (345)
++|+++|.||||||++.|+|||||+++||+|. +|. .| . |.
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~--~c-------------------~------------------c~ 41 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCT--GC-------------------Q------------------CD 41 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCC--CC-------------------c------------------Cc
Confidence 47999999999999999999999999999984 665 55 1 89
Q ss_pred eEEEeCCCCeEeeeEEEEEEEecCCCCCccccCCeEEEeEEecCCCC---CCCCceeeecCCCCChhHHHhhhh------
Q 019179 168 YSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLF---NSKTTGIVGLGGGDISLISQMRTT------ 238 (345)
Q Consensus 168 ~~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~---~~~~~GilGLg~~~~s~~~ql~~~------ 238 (345)
|.+.|+||+.+.|.+++|+|+|+..++. ..++++.|||+....+.+ ....+||||||++..++++||..+
T Consensus 42 ~~i~Ygd~~~~~G~~~~D~v~~~~~~~~-~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~ 120 (273)
T cd05475 42 YEIEYADGGSSMGVLVTDIFSLKLTNGS-RAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNV 120 (273)
T ss_pred cEeEeCCCCceEEEEEEEEEEEeecCCC-cccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCce
Confidence 9999998878889999999999764332 267899999998765532 357899999999999999998642
Q ss_pred --------------cCCe--------------e--e----------------cCCCCCcEEEcCCCccccccccccccCC
Q 019179 239 --------------IAGN--------------Q--R----------------LGVSTPDIVIDSDPTGSLELCYSFNSLS 272 (345)
Q Consensus 239 --------------~g~~--------------k--~----------------~~~~~~~~iiDs~~~~~~~~C~~~~~~~ 272 (345)
+|.. + . .......+||||+......+-. .
T Consensus 121 Fs~~l~~~~~g~l~~G~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~-----~ 195 (273)
T cd05475 121 IGHCLSSNGGGFLFFGDDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ-----A 195 (273)
T ss_pred EEEEccCCCCeEEEECCCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc-----c
Confidence 0110 0 0 0112345777774332111111 1
Q ss_pred CcCeEEEEEcC----cEEEeCCcceEEEeCCCeEEEEEEecC----CCcceechhhhceeEEEEECCCCEEEEeeCCC
Q 019179 273 QVPEVTIHFRG----ADVKLSRSNFFVKVSEDIVCSVFKGIT----NSVPIYGNIMQTNFLVGYDIEQQTVSFKPTDC 342 (345)
Q Consensus 273 ~~P~i~f~f~g----~~~~l~~~~y~~~~~~~~~C~~~~~~~----~~~~ilG~~fl~~~y~vfD~~~~riGfA~~~C 342 (345)
-+|+|+|+|++ ++++|||++|+++...+..|+++.... ...||||+.|||++|+|||++++|||||+++|
T Consensus 196 y~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 196 YFKPLTLKFGKGWRTRLLEIPPENYLIISEKGNVCLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred ccccEEEEECCCCceeEEEeCCCceEEEcCCCCEEEEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 27999999987 699999999999866666899965432 35799999999999999999999999999999
No 17
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=2.6e-37 Score=293.83 Aligned_cols=229 Identities=24% Similarity=0.419 Sum_probs=166.1
Q ss_pred ccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCcceecCCCCccccCCCCCCCCCCCcee
Q 019179 89 ANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQY 168 (345)
Q Consensus 89 ~~Y~~~i~vGtP~q~~~l~~DTGS~~~wv~~~~C~~~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~ 168 (345)
..|+++|.||||+|++.|+|||||+++||+|..|. +.++.|||++|+|++..+ |.|
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~------~~~~~f~~~~SsT~~~~~------------------~~~ 57 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHP------FIHTYFHRELSSTYRDLG------------------KGV 57 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCc------cccccCCchhCcCcccCC------------------ceE
Confidence 36999999999999999999999999999998774 346789999999999987 999
Q ss_pred EEEeCCCCeEeeeEEEEEEEecCCCCCccccCCeEEEeEEecCCCC--CCCCceeeecCCCCCh------------hHHH
Q 019179 169 SVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLF--NSKTTGIVGLGGGDIS------------LISQ 234 (345)
Q Consensus 169 ~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGLg~~~~s------------~~~q 234 (345)
++.|++|+.. |.+++|+|+|++... ..-.+.|++.....+.+ ....+||||||++.++ +++|
T Consensus 58 ~i~Yg~Gs~~-G~~~~D~v~ig~~~~---~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q 133 (364)
T cd05473 58 TVPYTQGSWE-GELGTDLVSIPKGPN---VTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQ 133 (364)
T ss_pred EEEECcceEE-EEEEEEEEEECCCCc---cceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhc
Confidence 9999999875 999999999985310 11123456665554433 2468999999997652 3333
Q ss_pred hhh--h-------------------------cCCe---------------------------eec----C--C---CCCc
Q 019179 235 MRT--T-------------------------IAGN---------------------------QRL----G--V---STPD 251 (345)
Q Consensus 235 l~~--~-------------------------~g~~---------------------------k~~----~--~---~~~~ 251 (345)
... . +|+. +.. . . ....
T Consensus 134 ~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~ 213 (364)
T cd05473 134 TGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLDCKEYNYDK 213 (364)
T ss_pred cCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCcceeEEEEEEEEEECCEecccccccccCcc
Confidence 110 0 1111 000 0 0 1136
Q ss_pred EEEcC--------------------CC-------c----cccccccccccC--CCcCeEEEEEcC------cEEEeCCcc
Q 019179 252 IVIDS--------------------DP-------T----GSLELCYSFNSL--SQVPEVTIHFRG------ADVKLSRSN 292 (345)
Q Consensus 252 ~iiDs--------------------~~-------~----~~~~~C~~~~~~--~~~P~i~f~f~g------~~~~l~~~~ 292 (345)
+|||| .. . .....|+..... ..+|+|+|+|+| .++.|+|++
T Consensus 214 ~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l~l~p~~ 293 (364)
T cd05473 214 AIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRITILPQL 293 (364)
T ss_pred EEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEEEECHHH
Confidence 99999 00 0 112468764321 258999999975 378999999
Q ss_pred eEEEeC---CCeEEEEEEecC-CCcceechhhhceeEEEEECCCCEEEEeeCCCCCC
Q 019179 293 FFVKVS---EDIVCSVFKGIT-NSVPIYGNIMQTNFLVGYDIEQQTVSFKPTDCTKQ 345 (345)
Q Consensus 293 y~~~~~---~~~~C~~~~~~~-~~~~ilG~~fl~~~y~vfD~~~~riGfA~~~C~~~ 345 (345)
|++... .+..|+++.... .+.||||+.|||++|+|||++++|||||+++|+++
T Consensus 294 Y~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~~ 350 (364)
T cd05473 294 YLRPVEDHGTQLDCYKFAISQSTNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAEH 350 (364)
T ss_pred hhhhhccCCCcceeeEEeeecCCCceEEeeeeEcceEEEEECCCCEEeeEecccccc
Confidence 998643 245798643322 46799999999999999999999999999999863
No 18
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=6.7e-37 Score=289.56 Aligned_cols=228 Identities=23% Similarity=0.429 Sum_probs=177.0
Q ss_pred eCCCCce-EEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCcceecCCCCccccCCCCC------------CCCC
Q 019179 97 IGTPPTE-RLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQK------------SCSG 163 (345)
Q Consensus 97 vGtP~q~-~~l~~DTGS~~~wv~~~~C~~~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~------------~c~~ 163 (345)
+|||-.+ +.|++||||+++||||.+ .+|+||+.++|+++.|+..... .|.+
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~----------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~ 65 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA----------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGN 65 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC----------------CCcCCCCccCcCChhhccccccCCCccccCCCCCCCCC
Confidence 5788888 999999999999998864 3488999999999999865422 5655
Q ss_pred CCceeEEE-eCCCCeEeeeEEEEEEEecCCCCCc---cccCCeEEEeEEecCC-CCCCCCceeeecCCCCChhHHHhhhh
Q 019179 164 VNCQYSVS-YGDGSFSNGNLATETVTLGSTTGQA---VALPGITFGCGTNNGG-LFNSKTTGIVGLGGGDISLISQMRTT 238 (345)
Q Consensus 164 ~~~~~~~~-Y~~gs~~~G~~~~D~v~~~~~~~~~---~~~~~~~fg~~~~~~~-~~~~~~~GilGLg~~~~s~~~ql~~~ 238 (345)
+.|.|... |++|+.+.|.+++|+|+|+..++.. +.++++.|||++.... .+....|||||||++.+|+++||...
T Consensus 66 ~~C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~ 145 (362)
T cd05489 66 NTCTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASA 145 (362)
T ss_pred CcCeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhh
Confidence 56888665 8899888899999999998755432 4689999999988643 23345899999999999999997542
Q ss_pred ----------------------cCC--------------e---------------------------ee-c---------
Q 019179 239 ----------------------IAG--------------N---------------------------QR-L--------- 245 (345)
Q Consensus 239 ----------------------~g~--------------~---------------------------k~-~--------- 245 (345)
+|+ . ++ .
T Consensus 146 ~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~ 225 (362)
T cd05489 146 FGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSAND 225 (362)
T ss_pred cCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhcccc
Confidence 111 0 00 0
Q ss_pred CCCCCcEEEcC-----------------------C-Cc------cccccccccc----c--CCCcCeEEEEEcC--cEEE
Q 019179 246 GVSTPDIVIDS-----------------------D-PT------GSLELCYSFN----S--LSQVPEVTIHFRG--ADVK 287 (345)
Q Consensus 246 ~~~~~~~iiDs-----------------------~-~~------~~~~~C~~~~----~--~~~~P~i~f~f~g--~~~~ 287 (345)
..+.+++|||| . .. ...+.||... + ...+|+|+|+|+| ++|+
T Consensus 226 ~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~~ 305 (362)
T cd05489 226 RLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWT 305 (362)
T ss_pred ccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCeEEE
Confidence 11246799998 0 00 0125898752 1 2479999999986 9999
Q ss_pred eCCcceEEEeCCCeEEEEEEecC---CCcceechhhhceeEEEEECCCCEEEEeeC
Q 019179 288 LSRSNFFVKVSEDIVCSVFKGIT---NSVPIYGNIMQTNFLVGYDIEQQTVSFKPT 340 (345)
Q Consensus 288 l~~~~y~~~~~~~~~C~~~~~~~---~~~~ilG~~fl~~~y~vfD~~~~riGfA~~ 340 (345)
|+|++|+++..++..|++|.+.+ ...||||+.|||++|++||++++|||||+.
T Consensus 306 l~~~ny~~~~~~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 306 IFGANSMVQVKGGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred EcCCceEEEcCCCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 99999999987777899988764 357999999999999999999999999975
No 19
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=2.2e-36 Score=275.36 Aligned_cols=197 Identities=46% Similarity=0.816 Sum_probs=156.9
Q ss_pred cEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCcceecCCCCccccCCCCCCCCCCCceeE
Q 019179 90 NYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYS 169 (345)
Q Consensus 90 ~Y~~~i~vGtP~q~~~l~~DTGS~~~wv~~~~C~~~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~~ 169 (345)
+|+++|.||||+|++.|+|||||+++||+| |.|.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~----------------------------------------------~~~~ 34 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC----------------------------------------------CSYE 34 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC----------------------------------------------CceE
Confidence 599999999999999999999999999965 4578
Q ss_pred EEeCCCCeEeeeEEEEEEEecCCCCCccccCCeEEEeEEecCCCC-CCCCceeeecCCCCChhHHHhhhh-------cC-
Q 019179 170 VSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLF-NSKTTGIVGLGGGDISLISQMRTT-------IA- 240 (345)
Q Consensus 170 ~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~-~~~~~GilGLg~~~~s~~~ql~~~-------~g- 240 (345)
+.|+||+...|.+++|+|+|++.+ ..++++.|||++...+ + ....+||||||+...+++.||..+ +.
T Consensus 35 ~~Y~dg~~~~G~~~~D~v~~g~~~---~~~~~~~Fg~~~~~~~-~~~~~~~GIlGLg~~~~s~~~ql~~~~~~Fs~~l~~ 110 (265)
T cd05476 35 YSYGDGSSTSGVLATETFTFGDSS---VSVPNVAFGCGTDNEG-GSFGGADGILGLGRGPLSLVSQLGSTGNKFSYCLVP 110 (265)
T ss_pred eEeCCCceeeeeEEEEEEEecCCC---CccCCEEEEecccccC-CccCCCCEEEECCCCcccHHHHhhcccCeeEEEccC
Confidence 999998888899999999999852 2678999999998876 4 567899999999999999998653 11
Q ss_pred -------Ce-------e-----------------e------------c--------------CCCCCcEEEcCCCccccc
Q 019179 241 -------GN-------Q-----------------R------------L--------------GVSTPDIVIDSDPTGSLE 263 (345)
Q Consensus 241 -------~~-------k-----------------~------------~--------------~~~~~~~iiDs~~~~~~~ 263 (345)
+. . . . ......+||||+......
T Consensus 111 ~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~l 190 (265)
T cd05476 111 HDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYL 190 (265)
T ss_pred CCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEc
Confidence 10 0 0 0 011233455553222111
Q ss_pred cccccccCCCcCeEEEEEc-CcEEEeCCcceEEEeCCCeEEEEEEec-CCCcceechhhhceeEEEEECCCCEEEEeeCC
Q 019179 264 LCYSFNSLSQVPEVTIHFR-GADVKLSRSNFFVKVSEDIVCSVFKGI-TNSVPIYGNIMQTNFLVGYDIEQQTVSFKPTD 341 (345)
Q Consensus 264 ~C~~~~~~~~~P~i~f~f~-g~~~~l~~~~y~~~~~~~~~C~~~~~~-~~~~~ilG~~fl~~~y~vfD~~~~riGfA~~~ 341 (345)
+ ...+|+|+|+|+ |.++.+++++|+++..++..|+++... ..+.||||+.|||++|++||++++|||||+++
T Consensus 191 p------~~~~P~i~~~f~~~~~~~i~~~~y~~~~~~~~~C~~~~~~~~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~ 264 (265)
T cd05476 191 P------DPAYPDLTLHFDGGADLELPPENYFVDVGEGVVCLAILSSSSGGVSILGNIQQQNFLVEYDLENSRLGFAPAD 264 (265)
T ss_pred C------ccccCCEEEEECCCCEEEeCcccEEEECCCCCEEEEEecCCCCCcEEEChhhcccEEEEEECCCCEEeeecCC
Confidence 1 013499999999 799999999999976666799997765 36789999999999999999999999999999
Q ss_pred C
Q 019179 342 C 342 (345)
Q Consensus 342 C 342 (345)
|
T Consensus 265 C 265 (265)
T cd05476 265 C 265 (265)
T ss_pred C
Confidence 9
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=2.5e-35 Score=270.30 Aligned_cols=116 Identities=35% Similarity=0.590 Sum_probs=102.8
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCcceecCCCCccccCCCCCCCCCCCceeEE
Q 019179 91 YLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYSV 170 (345)
Q Consensus 91 Y~~~i~vGtP~q~~~l~~DTGS~~~wv~~~~C~~~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~~~ 170 (345)
|+++|.||||+|++.|+|||||+++||+|..|. .|..+.++.||+++|+|++..+ .+.|.+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~--~~~~~~~~~y~~~~Sst~~~~~-----------------~~~~~i 61 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETP--AAQQGGHKLYDPSKSSTAKLLP-----------------GATWSI 61 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCC--chhhccCCcCCCccCccceecC-----------------CcEEEE
Confidence 899999999999999999999999999999998 6766778889999999998753 189999
Q ss_pred EeCCCCeEeeeEEEEEEEecCCCCCccccCCeEEEeEEecCCC-C-CCCCceeeecCCCCCh
Q 019179 171 SYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGL-F-NSKTTGIVGLGGGDIS 230 (345)
Q Consensus 171 ~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GilGLg~~~~s 230 (345)
.|++|+.+.|.+++|+|+|++. +++++.||+++...+. + ....+||||||++..+
T Consensus 62 ~Y~~G~~~~G~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~ 118 (278)
T cd06097 62 SYGDGSSASGIVYTDTVSIGGV-----EVPNQAIELATAVSASFFSDTASDGLLGLAFSSIN 118 (278)
T ss_pred EeCCCCeEEEEEEEEEEEECCE-----EECCeEEEEEeecCccccccccccceeeecccccc
Confidence 9999987679999999999986 8999999999987653 3 5689999999997654
No 21
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=6.5e-36 Score=278.68 Aligned_cols=222 Identities=28% Similarity=0.534 Sum_probs=174.9
Q ss_pred cEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCC-CCCCCCCCCCCCCCcceecCCCCccccCCCCCCCCCCCcee
Q 019179 90 NYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQC-YMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQY 168 (345)
Q Consensus 90 ~Y~~~i~vGtP~q~~~l~~DTGS~~~wv~~~~C~~~~C-~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~ 168 (345)
+|+++|.||||+|+++|++||||+++||++..|. .| .+.....|++.+|+|++... +.+
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~--~~~~~~~~~~y~~~~S~t~~~~~------------------~~~ 60 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCN--SCSSCASSGFYNPSKSSTFSNQG------------------KPF 60 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTEC--SHTHHCTSC-BBGGGSTTEEEEE------------------EEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccc--cccccccccccccccccccccce------------------eee
Confidence 5999999999999999999999999999999888 43 33567899999999999887 899
Q ss_pred EEEeCCCCeEeeeEEEEEEEecCCCCCccccCCeEEEeEEecCCC-C-CCCCceeeecCCCC-------ChhHHHhhhh-
Q 019179 169 SVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGL-F-NSKTTGIVGLGGGD-------ISLISQMRTT- 238 (345)
Q Consensus 169 ~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GilGLg~~~-------~s~~~ql~~~- 238 (345)
.+.|++|+ +.|.+++|+|.|++. .++++.||++....+. + ....+||||||++. .+++.+|.++
T Consensus 61 ~~~y~~g~-~~G~~~~D~v~ig~~-----~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g 134 (317)
T PF00026_consen 61 SISYGDGS-VSGNLVSDTVSIGGL-----TIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQG 134 (317)
T ss_dssp EEEETTEE-EEEEEEEEEEEETTE-----EEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTT
T ss_pred eeeccCcc-cccccccceEeeeec-----cccccceeccccccccccccccccccccccCCcccccccCCcceecchhhc
Confidence 99999999 669999999999996 8889999999996553 2 57789999999753 3455665432
Q ss_pred ----------------------cCCe-------------------------------e-ecCCCCCcEEEcCC-------
Q 019179 239 ----------------------IAGN-------------------------------Q-RLGVSTPDIVIDSD------- 257 (345)
Q Consensus 239 ----------------------~g~~-------------------------------k-~~~~~~~~~iiDs~------- 257 (345)
+|+. + ........++|||.
T Consensus 135 ~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~~~~~~~~~~~Dtgt~~i~lp 214 (317)
T PF00026_consen 135 LISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVSSGYWSVPLDSISIGGESVFSSSGQQAILDTGTSYIYLP 214 (317)
T ss_dssp SSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSSTTTTEEEEEEEEETTEEEEEEEEEEEEEETTBSSEEEE
T ss_pred cccccccceeeeecccccchheeeccccccccCceeccCcccccccccccccccccccccccccceeeeccccccccccc
Confidence 2222 0 00111246889991
Q ss_pred ----------------CccccccccccccCCCcCeEEEEEcCcEEEeCCcceEEEeCCC--eEEEE-EEe----cCCCcc
Q 019179 258 ----------------PTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSED--IVCSV-FKG----ITNSVP 314 (345)
Q Consensus 258 ----------------~~~~~~~C~~~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~~~~--~~C~~-~~~----~~~~~~ 314 (345)
...+..+|.... .+|.|+|+|++.+|+|||++|+.+.... ..|+. |.. .....+
T Consensus 215 ~~~~~~i~~~l~~~~~~~~~~~~c~~~~---~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~ 291 (317)
T PF00026_consen 215 RSIFDAIIKALGGSYSDGVYSVPCNSTD---SLPDLTFTFGGVTFTIPPSDYIFKIEDGNGGYCYLGIQPMDSSDDSDDW 291 (317)
T ss_dssp HHHHHHHHHHHTTEEECSEEEEETTGGG---GSEEEEEEETTEEEEEEHHHHEEEESSTTSSEEEESEEEESSTTSSSEE
T ss_pred chhhHHHHhhhcccccceeEEEeccccc---ccceEEEeeCCEEEEecchHhcccccccccceeEeeeecccccccCCce
Confidence 112234555433 6899999999999999999999987643 38988 776 226789
Q ss_pred eechhhhceeEEEEECCCCEEEEeeC
Q 019179 315 IYGNIMQTNFLVGYDIEQQTVSFKPT 340 (345)
Q Consensus 315 ilG~~fl~~~y~vfD~~~~riGfA~~ 340 (345)
|||.+|||++|++||.|++|||||++
T Consensus 292 iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 292 ILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp EEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred EecHHHhhceEEEEeCCCCEEEEecC
Confidence 99999999999999999999999986
No 22
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=5.4e-33 Score=256.80 Aligned_cols=189 Identities=25% Similarity=0.460 Sum_probs=151.6
Q ss_pred cEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCcceecCCCCccccCCCCCCCCCCCceeE
Q 019179 90 NYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYS 169 (345)
Q Consensus 90 ~Y~~~i~vGtP~q~~~l~~DTGS~~~wv~~~~C~~~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~~ 169 (345)
.|+++|.||||+|++.|++||||+++||+ .|.
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~------------------------------------------------~~~ 33 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP------------------------------------------------DFS 33 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee------------------------------------------------eeE
Confidence 59999999999999999999999999995 257
Q ss_pred EEeCCCCeEeeeEEEEEEEecCCCCCccccCCeEEEeEEecCCCCCCCCceeeecCCCCC-----------hhHHHhhhh
Q 019179 170 VSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGGGDI-----------SLISQMRTT 238 (345)
Q Consensus 170 ~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~-----------s~~~ql~~~ 238 (345)
+.|++|+.+.|.+++|+|+|++. .++++.|||++.. ...+||||||++.. +++.||..+
T Consensus 34 ~~Y~~g~~~~G~~~~D~v~~g~~-----~~~~~~fg~~~~~-----~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~ 103 (295)
T cd05474 34 ISYGDGTSASGTWGTDTVSIGGA-----TVKNLQFAVANST-----SSDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQ 103 (295)
T ss_pred EEeccCCcEEEEEEEEEEEECCe-----EecceEEEEEecC-----CCCcceeeECCCCCcccccCCCcCCCHHHHHHHC
Confidence 88999877779999999999986 8899999999984 34689999999776 577776532
Q ss_pred -----------------------cCCe----------------e------e-----------c--------CCCCCcEEE
Q 019179 239 -----------------------IAGN----------------Q------R-----------L--------GVSTPDIVI 254 (345)
Q Consensus 239 -----------------------~g~~----------------k------~-----------~--------~~~~~~~ii 254 (345)
+|+. . . . ......+||
T Consensus 104 g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~ii 183 (295)
T cd05474 104 GLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALL 183 (295)
T ss_pred CcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEE
Confidence 1111 0 0 0 123457899
Q ss_pred cC-------------------------CCccccccccccccCCCcCeEEEEEcCcEEEeCCcceEEEeC----CCeEEE-
Q 019179 255 DS-------------------------DPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVS----EDIVCS- 304 (345)
Q Consensus 255 Ds-------------------------~~~~~~~~C~~~~~~~~~P~i~f~f~g~~~~l~~~~y~~~~~----~~~~C~- 304 (345)
|| ....+..+|+... . |.|+|+|+|++++||+++|+++.. .+..|+
T Consensus 184 DSGt~~~~lP~~~~~~l~~~~~~~~~~~~~~~~~~C~~~~---~-p~i~f~f~g~~~~i~~~~~~~~~~~~~~~~~~C~~ 259 (295)
T cd05474 184 DSGTTLTYLPSDIVDAIAKQLGATYDSDEGLYVVDCDAKD---D-GSLTFNFGGATISVPLSDLVLPASTDDGGDGACYL 259 (295)
T ss_pred CCCCccEeCCHHHHHHHHHHhCCEEcCCCcEEEEeCCCCC---C-CEEEEEECCeEEEEEHHHhEeccccCCCCCCCeEE
Confidence 99 1122345666543 3 999999999999999999998864 256796
Q ss_pred EEEecCCCcceechhhhceeEEEEECCCCEEEEeeC
Q 019179 305 VFKGITNSVPIYGNIMQTNFLVGYDIEQQTVSFKPT 340 (345)
Q Consensus 305 ~~~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfA~~ 340 (345)
+|.+.+.+.||||++|||++|++||.+++|||||++
T Consensus 260 ~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 260 GIQPSTSDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred EEEeCCCCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 488775578999999999999999999999999986
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=99.97 E-value=7.7e-31 Score=240.41 Aligned_cols=121 Identities=44% Similarity=0.822 Sum_probs=105.1
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCC--CCCCCCCcceecCCCCccccCCCCCCCCCCCcee
Q 019179 91 YLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPL--FDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQY 168 (345)
Q Consensus 91 Y~~~i~vGtP~q~~~l~~DTGS~~~wv~~~~C~~~~C~~~~~~~--y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~ 168 (345)
|+++|.||||+|++.|++||||+++||+|..|. .|..+.... |++..|+++.... |.|
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~--~~~~~~~~~~~~~~~~s~~~~~~~------------------~~~ 60 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCT--SCSCQKHPRFKYDSSKSSTYKDTG------------------CTF 60 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCC--ccccccCCCCccCccCCceeecCC------------------CEE
Confidence 789999999999999999999999999999998 554444444 7888888887765 999
Q ss_pred EEEeCCCCeEeeeEEEEEEEecCCCCCccccCCeEEEeEEecCCCC-CCCCceeeecCCCC------ChhHHHhhh
Q 019179 169 SVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLF-NSKTTGIVGLGGGD------ISLISQMRT 237 (345)
Q Consensus 169 ~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~-~~~~~GilGLg~~~------~s~~~ql~~ 237 (345)
.+.|++|+.. |.+++|+|+|++. .++++.|||++.....+ ....+||||||+.. .+++.||.+
T Consensus 61 ~~~Y~~g~~~-g~~~~D~v~~~~~-----~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~ 130 (283)
T cd05471 61 SITYGDGSVT-GGLGTDTVTIGGL-----TIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKS 130 (283)
T ss_pred EEEECCCeEE-EEEEEeEEEECCE-----EEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHH
Confidence 9999998766 9999999999987 78999999999987644 57899999999988 678888765
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.95 E-value=1.1e-27 Score=202.11 Aligned_cols=136 Identities=51% Similarity=0.938 Sum_probs=113.6
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCcceecCCCCccccCCCCC--CCC--CCCc
Q 019179 91 YLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQK--SCS--GVNC 166 (345)
Q Consensus 91 Y~~~i~vGtP~q~~~l~~DTGS~~~wv~~~~C~~~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~--~c~--~~~~ 166 (345)
|+++|.||||+|++.|++||||+++|++| ..+.|+|.+|+||+.++|.++.|...+.. .|. +..|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C-----------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C 69 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC-----------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSC 69 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET---------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC-----------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCcc
Confidence 89999999999999999999999999988 34789999999999999999999877643 333 3489
Q ss_pred eeEEEeCCCCeEeeeEEEEEEEecCCCCCccccCCeEEEeEEecCCCCCCCCceeeecCCCCChhHHHhhhh
Q 019179 167 QYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGGGDISLISQMRTT 238 (345)
Q Consensus 167 ~~~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~ 238 (345)
.|.+.|++++.+.|.+++|+|+++..++....+.++.|||++...+.+ ...+||||||+..+|+++||...
T Consensus 70 ~y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~-~~~~GilGLg~~~~Sl~sQl~~~ 140 (164)
T PF14543_consen 70 PYSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLF-YGADGILGLGRGPLSLPSQLASS 140 (164)
T ss_dssp EEEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSS-TTEEEEEE-SSSTTSHHHHHHHH
T ss_pred cceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCC-cCCCcccccCCCcccHHHHHHHh
Confidence 999999999999999999999999876554578899999999988755 58999999999999999999765
No 25
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.92 E-value=5.6e-25 Score=173.14 Aligned_cols=106 Identities=40% Similarity=0.741 Sum_probs=94.3
Q ss_pred EEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCC-CCCCCCcceecCCCCccccCCCCCCCCCCCceeEEE
Q 019179 93 IRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLF-DPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYSVS 171 (345)
Q Consensus 93 ~~i~vGtP~q~~~l~~DTGS~~~wv~~~~C~~~~C~~~~~~~y-~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~~~~ 171 (345)
++|.||||+|++.|+|||||+++||+|..|. .|..+.++.| +|..|++++... |.|.+.
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~--~~~~~~~~~~~~~~~sst~~~~~------------------~~~~~~ 60 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQ--SLAIYSHSSYDDPSASSTYSDNG------------------CTFSIT 60 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCC--CcccccccccCCcCCCCCCCCCC------------------cEEEEE
Confidence 4799999999999999999999999999998 5654566677 999999999877 999999
Q ss_pred eCCCCeEeeeEEEEEEEecCCCCCccccCCeEEEeEEecCCCC--CCCCceeeec
Q 019179 172 YGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLF--NSKTTGIVGL 224 (345)
Q Consensus 172 Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGL 224 (345)
|++|+.. |.++.|+|+|++. .++++.|||++...+.+ ....+|||||
T Consensus 61 Y~~g~~~-g~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 61 YGTGSLS-GGLSTDTVSIGDI-----EVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred eCCCeEE-EEEEEEEEEECCE-----EECCEEEEEEEecCCccccccccccccCC
Confidence 9999866 9999999999986 89999999999987753 4678999998
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.61 E-value=2e-15 Score=127.16 Aligned_cols=80 Identities=36% Similarity=0.785 Sum_probs=66.5
Q ss_pred ccccccccccc------CCCcCeEEEEEc-CcEEEeCCcceEEEeCCCeEEEEEEec---CCCcceechhhhceeEEEEE
Q 019179 260 GSLELCYSFNS------LSQVPEVTIHFR-GADVKLSRSNFFVKVSEDIVCSVFKGI---TNSVPIYGNIMQTNFLVGYD 329 (345)
Q Consensus 260 ~~~~~C~~~~~------~~~~P~i~f~f~-g~~~~l~~~~y~~~~~~~~~C~~~~~~---~~~~~ilG~~fl~~~y~vfD 329 (345)
..+..||+.+. ...+|+|+|+|. |++++|++++|++...++..|++|.++ +.+..|||+.+|++++++||
T Consensus 72 ~~~~~Cy~~~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fD 151 (161)
T PF14541_consen 72 SGFDLCYNLSSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSPGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFD 151 (161)
T ss_dssp TT-S-EEEGGCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECTTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEE
T ss_pred CCCCceeeccccccccccccCCeEEEEEeCCcceeeeccceeeeccCCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEE
Confidence 45678999865 148999999999 699999999999999888999998887 37899999999999999999
Q ss_pred CCCCEEEEee
Q 019179 330 IEQQTVSFKP 339 (345)
Q Consensus 330 ~~~~riGfA~ 339 (345)
++++||||+|
T Consensus 152 l~~~~igF~~ 161 (161)
T PF14541_consen 152 LENGRIGFAP 161 (161)
T ss_dssp TTTTEEEEEE
T ss_pred CCCCEEEEeC
Confidence 9999999997
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.19 E-value=6.2e-06 Score=62.42 Aligned_cols=94 Identities=14% Similarity=0.230 Sum_probs=67.5
Q ss_pred ccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCcceecCCCCccccCCCCCCCCCCCcee
Q 019179 89 ANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQY 168 (345)
Q Consensus 89 ~~Y~~~i~vGtP~q~~~l~~DTGS~~~wv~~~~C~~~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~ 168 (345)
+.|++++.|+ .+++.+++|||++.+|+...... .+ .. ... . ....
T Consensus 1 ~~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~--~l-----~~-------~~~-~------------------~~~~ 45 (96)
T cd05483 1 GHFVVPVTIN--GQPVRFLLDTGASTTVISEELAE--RL-----GL-------PLT-L------------------GGKV 45 (96)
T ss_pred CcEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH--Hc-----CC-------Ccc-C------------------CCcE
Confidence 3589999999 79999999999999999654221 11 00 000 0 0455
Q ss_pred EEEeCCCCeEeeeEEEEEEEecCCCCCccccCCeEEEeEEecCCCCCCCCceeeecCC
Q 019179 169 SVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGG 226 (345)
Q Consensus 169 ~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~ 226 (345)
.+..++|.........+.+++++. +++++.+........ ..+||||+.+
T Consensus 46 ~~~~~~G~~~~~~~~~~~i~ig~~-----~~~~~~~~v~d~~~~----~~~gIlG~d~ 94 (96)
T cd05483 46 TVQTANGRVRAARVRLDSLQIGGI-----TLRNVPAVVLPGDAL----GVDGLLGMDF 94 (96)
T ss_pred EEEecCCCccceEEEcceEEECCc-----EEeccEEEEeCCccc----CCceEeChHH
Confidence 677788877767777899999986 788888887765432 4799999864
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.02 E-value=0.0034 Score=49.96 Aligned_cols=96 Identities=13% Similarity=0.195 Sum_probs=64.1
Q ss_pred CCccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCcceecCCCCccccCCCCCCCCCCCc
Q 019179 87 NNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNC 166 (345)
Q Consensus 87 ~~~~Y~~~i~vGtP~q~~~l~~DTGS~~~wv~~~~C~~~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~~ 166 (345)
.++.|++++.|. .+++.+++|||++.+-+....-. .- ..++.. .. .
T Consensus 8 ~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~--~L------gl~~~~------~~------------------~ 53 (121)
T TIGR02281 8 GDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQ--RL------GLDLNR------LG------------------Y 53 (121)
T ss_pred CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH--Hc------CCCccc------CC------------------c
Confidence 568899999997 68999999999999987543211 00 011110 00 2
Q ss_pred eeEEEeCCCCeEeeeEEEEEEEecCCCCCccccCCeEEEeEEecCCCCCCCCceeeecCC
Q 019179 167 QYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGG 226 (345)
Q Consensus 167 ~~~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~ 226 (345)
...+.=+.|......+.-|.+.+|+. .++++.+.+..... ..+|+||+.+
T Consensus 54 ~~~~~ta~G~~~~~~~~l~~l~iG~~-----~~~nv~~~v~~~~~-----~~~~LLGm~f 103 (121)
T TIGR02281 54 TVTVSTANGQIKAARVTLDRVAIGGI-----VVNDVDAMVAEGGA-----LSESLLGMSF 103 (121)
T ss_pred eEEEEeCCCcEEEEEEEeCEEEECCE-----EEeCcEEEEeCCCc-----CCceEcCHHH
Confidence 33444455666656678899999997 88888877764321 2479999864
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.78 E-value=0.011 Score=43.70 Aligned_cols=89 Identities=19% Similarity=0.250 Sum_probs=55.7
Q ss_pred EEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCcceecCCCCccccCCCCCCCCCCCceeEEEe
Q 019179 93 IRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYSVSY 172 (345)
Q Consensus 93 ~~i~vGtP~q~~~l~~DTGS~~~wv~~~~C~~~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~~~~~~~Y 172 (345)
+++.|+ .+++++++|||++.+.+...... .. ...+.... ....+.-
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~--~l------~~~~~~~~------------------------~~~~~~~ 46 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAK--KL------GLKPRPKS------------------------VPISVSG 46 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHH--Hc------CCCCcCCc------------------------eeEEEEe
Confidence 357777 68999999999998887543322 00 00110000 1233444
Q ss_pred CCCCeEeeeEEEEEEEecCCCCCccccCCeEEEeEEecCCCCCCCCceeeecC
Q 019179 173 GDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLG 225 (345)
Q Consensus 173 ~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg 225 (345)
.+|.........+.+.+++. ++.++.|-.... ....+||||+-
T Consensus 47 ~~g~~~~~~~~~~~i~ig~~-----~~~~~~~~v~~~-----~~~~~~iLG~d 89 (90)
T PF13650_consen 47 AGGSVTVYRGRVDSITIGGI-----TLKNVPFLVVDL-----GDPIDGILGMD 89 (90)
T ss_pred CCCCEEEEEEEEEEEEECCE-----EEEeEEEEEECC-----CCCCEEEeCCc
Confidence 55555556677778999986 777787776661 14578999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.24 E-value=0.16 Score=40.46 Aligned_cols=93 Identities=16% Similarity=0.256 Sum_probs=57.0
Q ss_pred CCccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCcceecCCCCccccCCCCCCCCCCCc
Q 019179 87 NNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNC 166 (345)
Q Consensus 87 ~~~~Y~~~i~vGtP~q~~~l~~DTGS~~~wv~~~~C~~~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~~~ 166 (345)
....+++++.|+ ++++.+++|||++..++....+. .+.-. .... .
T Consensus 13 ~~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a~--~lgl~------~~~~-------------------------~ 57 (124)
T cd05479 13 KVPMLYINVEIN--GVPVKAFVDSGAQMTIMSKACAE--KCGLM------RLID-------------------------K 57 (124)
T ss_pred eeeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHHH--HcCCc------cccC-------------------------c
Confidence 345689999999 78999999999999998554333 12100 0000 1
Q ss_pred eeE-EEeC-CCCeEeeeEEEEEEEecCCCCCccccCCeEEEeEEecCCCCCCCCceeeecCC
Q 019179 167 QYS-VSYG-DGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGG 226 (345)
Q Consensus 167 ~~~-~~Y~-~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~ 226 (345)
.+. ...+ ++....|....+.+.+++. ..+ ..|.+... ...|+|||+-+
T Consensus 58 ~~~~~~~g~g~~~~~g~~~~~~l~i~~~-----~~~-~~~~Vl~~------~~~d~ILG~d~ 107 (124)
T cd05479 58 RFQGIAKGVGTQKILGRIHLAQVKIGNL-----FLP-CSFTVLED------DDVDFLIGLDM 107 (124)
T ss_pred ceEEEEecCCCcEEEeEEEEEEEEECCE-----Eee-eEEEEECC------CCcCEEecHHH
Confidence 122 2222 2234447777788999885 443 56655432 25799999843
No 31
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=93.06 E-value=0.12 Score=38.66 Aligned_cols=29 Identities=14% Similarity=0.067 Sum_probs=25.3
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeCCC
Q 019179 91 YLIRISIGTPPTERLAVADTGSDLIWTQCEP 121 (345)
Q Consensus 91 Y~~~i~vGtP~q~~~l~~DTGS~~~wv~~~~ 121 (345)
|++.+.|+ .+++.+++||||+..++.-..
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~ 29 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKT 29 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHH
Confidence 57889999 799999999999999996553
No 32
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=90.16 E-value=0.56 Score=33.42 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=29.0
Q ss_pred CCccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCC
Q 019179 87 NNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPC 122 (345)
Q Consensus 87 ~~~~Y~~~i~vGtP~q~~~l~~DTGS~~~wv~~~~C 122 (345)
..+.+++++.|| ++.+.+++|||++...|....+
T Consensus 5 ~~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 5 DPGLMYVPVSIG--GVQVKALVDTGATHNFISESLA 38 (72)
T ss_pred cCCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHH
Confidence 457899999999 6999999999999998866543
No 33
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=87.97 E-value=1.8 Score=37.24 Aligned_cols=83 Identities=12% Similarity=0.108 Sum_probs=59.5
Q ss_pred ccCCccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCCCCCCCCCCCCCCCcceecCCCCccccCCCCCCCCCC
Q 019179 85 IPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGV 164 (345)
Q Consensus 85 ~~~~~~Y~~~i~vGtP~q~~~l~~DTGS~~~wv~~~~C~~~~C~~~~~~~y~~~~SsT~~~~~c~~~~C~~~~~~~c~~~ 164 (345)
...+|.|+++..|- .|++..++|||-+.+-+.-..-. .--||.+...
T Consensus 100 k~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~--------RlGid~~~l~----------------------- 146 (215)
T COG3577 100 KSRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDAR--------RLGIDLNSLD----------------------- 146 (215)
T ss_pred ecCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHH--------HhCCCccccC-----------------------
Confidence 45789999999998 89999999999998887544221 1124433211
Q ss_pred CceeEEEeCCCCeEeeeEEEEEEEecCCCCCccccCCeEEEe
Q 019179 165 NCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGC 206 (345)
Q Consensus 165 ~~~~~~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg~ 206 (345)
.++.+.-+.|....-.+-.|.|.||+. .++++.=-+
T Consensus 147 -y~~~v~TANG~~~AA~V~Ld~v~IG~I-----~~~nV~A~V 182 (215)
T COG3577 147 -YTITVSTANGRARAAPVTLDRVQIGGI-----RVKNVDAMV 182 (215)
T ss_pred -CceEEEccCCccccceEEeeeEEEccE-----EEcCchhhe
Confidence 566777788887767788999999986 666655333
No 34
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=84.94 E-value=1.4 Score=33.17 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=23.4
Q ss_pred EEEEEeCCCCceEEEEEEcCCCceeEeCCC
Q 019179 92 LIRISIGTPPTERLAVADTGSDLIWTQCEP 121 (345)
Q Consensus 92 ~~~i~vGtP~q~~~l~~DTGS~~~wv~~~~ 121 (345)
+.+|.|. .+++.+++||||+.+.++...
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceecccc
Confidence 5677888 689999999999999996653
No 35
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=79.12 E-value=2.8 Score=31.15 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=21.0
Q ss_pred EEEeCCCCceEEEEEEcCCCceeEeCC
Q 019179 94 RISIGTPPTERLAVADTGSDLIWTQCE 120 (345)
Q Consensus 94 ~i~vGtP~q~~~l~~DTGS~~~wv~~~ 120 (345)
.+.|+ .|.+.+++|||++++-+.-.
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 45667 79999999999999999653
No 36
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=77.10 E-value=3.7 Score=38.66 Aligned_cols=56 Identities=25% Similarity=0.493 Sum_probs=35.1
Q ss_pred EEeCCCCeEeeeEEEEEEEecCCCCCccccCCeEEE----------eEEecCC--CC-CCCCceeeecCCCC
Q 019179 170 VSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFG----------CGTNNGG--LF-NSKTTGIVGLGGGD 228 (345)
Q Consensus 170 ~~Y~~gs~~~G~~~~D~v~~~~~~~~~~~~~~~~fg----------~~~~~~~--~~-~~~~~GilGLg~~~ 228 (345)
..|++|..+ |-+.+-+|+|++.... .++=|.++ |...... .. .....||||+|.-.
T Consensus 82 ~~F~sgytW-GsVr~AdV~igge~A~--~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~ 150 (370)
T PF11925_consen 82 AQFASGYTW-GSVRTADVTIGGETAS--SIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFP 150 (370)
T ss_pred hhccCcccc-cceEEEEEEEcCeecc--ccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCc
Confidence 457788888 9999999999987322 33333333 2221111 11 46789999998743
No 37
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=76.80 E-value=3.3 Score=30.46 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=21.1
Q ss_pred EEEeCCCCceEEEEEEcCCCceeEeCCC
Q 019179 94 RISIGTPPTERLAVADTGSDLIWTQCEP 121 (345)
Q Consensus 94 ~i~vGtP~q~~~l~~DTGS~~~wv~~~~ 121 (345)
.+.|. ++++.+++|||++.+-+....
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~ 27 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDL 27 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHH
Confidence 45565 799999999999999996543
No 38
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=75.60 E-value=8.2 Score=31.16 Aligned_cols=30 Identities=20% Similarity=0.090 Sum_probs=27.1
Q ss_pred CCcceechhhhceeEEEEECCCCEEEEeeC
Q 019179 311 NSVPIYGNIMQTNFLVGYDIEQQTVSFKPT 340 (345)
Q Consensus 311 ~~~~ilG~~fl~~~y~vfD~~~~riGfA~~ 340 (345)
+-..|||..||+.+..+-|..+++|-|...
T Consensus 103 ~~DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 103 GYDVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred ceeeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 457899999999999999999999999764
No 39
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=61.25 E-value=12 Score=31.25 Aligned_cols=29 Identities=14% Similarity=0.173 Sum_probs=22.4
Q ss_pred EEEEEeCCCCceEEEEEEcCCCceeEeCC
Q 019179 92 LIRISIGTPPTERLAVADTGSDLIWTQCE 120 (345)
Q Consensus 92 ~~~i~vGtP~q~~~l~~DTGS~~~wv~~~ 120 (345)
...+.++....+++++|||||+..++...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 34455556689999999999999888554
No 40
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=49.89 E-value=47 Score=25.71 Aligned_cols=39 Identities=21% Similarity=0.377 Sum_probs=27.3
Q ss_pred ccCCeEEEeEEecCCCC-CCCCceeeecCCCCChhHHHhh
Q 019179 198 ALPGITFGCGTNNGGLF-NSKTTGIVGLGGGDISLISQMR 236 (345)
Q Consensus 198 ~~~~~~fg~~~~~~~~~-~~~~~GilGLg~~~~s~~~ql~ 236 (345)
..+++.|--++...+.+ +.....+.|||+++-.-..++.
T Consensus 61 i~~~~~y~kas~~FhQWrD~R~~tVyGLnF~Sk~ea~~F~ 100 (111)
T cd01206 61 ITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEQQLTKFA 100 (111)
T ss_pred ccCCcceeecccccccccccccceeeecccCCHHHHHHHH
Confidence 56677777666666666 5566799999998876554443
No 41
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=44.72 E-value=41 Score=26.72 Aligned_cols=31 Identities=19% Similarity=0.100 Sum_probs=22.4
Q ss_pred CccEEEEEEeCCCCceEEEEEEcCCCceeEeCC
Q 019179 88 NANYLIRISIGTPPTERLAVADTGSDLIWTQCE 120 (345)
Q Consensus 88 ~~~Y~~~i~vGtP~q~~~l~~DTGS~~~wv~~~ 120 (345)
....|+++.|. .+++++.+|||.-.+-+...
T Consensus 22 v~mLyI~~~in--g~~vkA~VDtGAQ~tims~~ 52 (124)
T PF09668_consen 22 VSMLYINCKIN--GVPVKAFVDTGAQSTIMSKS 52 (124)
T ss_dssp ----EEEEEET--TEEEEEEEETT-SS-EEEHH
T ss_pred cceEEEEEEEC--CEEEEEEEeCCCCccccCHH
Confidence 34679999999 79999999999999888554
No 42
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=42.92 E-value=26 Score=27.57 Aligned_cols=27 Identities=11% Similarity=0.095 Sum_probs=24.0
Q ss_pred CCcceechhhhceeEEEEECCCCEEEE
Q 019179 311 NSVPIYGNIMQTNFLVGYDIEQQTVSF 337 (345)
Q Consensus 311 ~~~~ilG~~fl~~~y~vfD~~~~riGf 337 (345)
....|||..||+.+-.+.|+.+++|-|
T Consensus 98 ~~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 98 DVDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred CcCEEecHHHHHhCCeEEECCCCEEEC
Confidence 457899999999999999999998853
No 43
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=37.08 E-value=27 Score=26.04 Aligned_cols=18 Identities=17% Similarity=-0.069 Sum_probs=15.7
Q ss_pred ceEEEEEEcCCCceeEeC
Q 019179 102 TERLAVADTGSDLIWTQC 119 (345)
Q Consensus 102 q~~~l~~DTGS~~~wv~~ 119 (345)
++.++.+|||++..-++-
T Consensus 9 ~~v~~~vDtGA~vnllp~ 26 (93)
T cd05481 9 QSVKFQLDTGATCNVLPL 26 (93)
T ss_pred eeEEEEEecCCEEEeccH
Confidence 899999999999877754
No 44
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=36.49 E-value=47 Score=25.47 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=18.5
Q ss_pred EEEEeCCCCc----eEEEEEEcCCCcee
Q 019179 93 IRISIGTPPT----ERLAVADTGSDLIW 116 (345)
Q Consensus 93 ~~i~vGtP~q----~~~l~~DTGS~~~w 116 (345)
+++.|..|.| ++.+++|||.+..-
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~ 29 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFL 29 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEE
Confidence 5778888732 67899999998664
No 45
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=33.30 E-value=1.9e+02 Score=21.52 Aligned_cols=22 Identities=14% Similarity=0.099 Sum_probs=17.6
Q ss_pred ceEEEEEEcCCCceeEeCCCCC
Q 019179 102 TERLAVADTGSDLIWTQCEPCP 123 (345)
Q Consensus 102 q~~~l~~DTGS~~~wv~~~~C~ 123 (345)
.....++|||+...-+|...+.
T Consensus 8 s~~~fLVDTGA~vSviP~~~~~ 29 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASSTK 29 (89)
T ss_pred CCcEEEEeCCCceEeecccccc
Confidence 4568899999999999876544
No 46
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=29.67 E-value=51 Score=20.02 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=7.1
Q ss_pred CcchhhHHHHHHHHHHh
Q 019179 1 MATFLSCVFILFFLCFY 17 (345)
Q Consensus 1 m~~~~~l~~~~~~~~~~ 17 (345)
|+.+ ++.++.++++++
T Consensus 1 Mk~l-~~a~~l~lLal~ 16 (36)
T PF08194_consen 1 MKCL-SLAFALLLLALA 16 (36)
T ss_pred Ccee-HHHHHHHHHHHH
Confidence 6633 454444444433
No 47
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=26.45 E-value=69 Score=28.51 Aligned_cols=27 Identities=22% Similarity=0.646 Sum_probs=25.8
Q ss_pred cceechhhhceeEEEEECCCCEEEEee
Q 019179 313 VPIYGNIMQTNFLVGYDIEQQTVSFKP 339 (345)
Q Consensus 313 ~~ilG~~fl~~~y~vfD~~~~riGfA~ 339 (345)
.+|||++|||++|++||.+++|||||+
T Consensus 257 ~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 679999999999999999999999985
No 48
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=25.89 E-value=79 Score=28.47 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=22.7
Q ss_pred ccEEEE---EEeCC---CCceEEEEEEcCCCceeEeCC
Q 019179 89 ANYLIR---ISIGT---PPTERLAVADTGSDLIWTQCE 120 (345)
Q Consensus 89 ~~Y~~~---i~vGt---P~q~~~l~~DTGS~~~wv~~~ 120 (345)
..|.++ |.||. +.....+++|||++++.+|..
T Consensus 157 ~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 157 KHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 456554 57873 223457999999999999764
No 49
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=23.26 E-value=87 Score=28.92 Aligned_cols=32 Identities=22% Similarity=0.334 Sum_probs=22.0
Q ss_pred ccEEEE---EEeCCC-----CceEEEEEEcCCCceeEeCC
Q 019179 89 ANYLIR---ISIGTP-----PTERLAVADTGSDLIWTQCE 120 (345)
Q Consensus 89 ~~Y~~~---i~vGtP-----~q~~~l~~DTGS~~~wv~~~ 120 (345)
..|.++ |.||.. .....+++|||++.+++|..
T Consensus 188 ~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~ 227 (317)
T cd06098 188 GYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTT 227 (317)
T ss_pred cEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHH
Confidence 445444 577742 23457999999999998754
No 50
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=21.63 E-value=1.4e+02 Score=23.97 Aligned_cols=30 Identities=10% Similarity=0.076 Sum_probs=24.6
Q ss_pred ccEEEEEEeCCCCceEEEEEEcCCCceeEeCC
Q 019179 89 ANYLIRISIGTPPTERLAVADTGSDLIWTQCE 120 (345)
Q Consensus 89 ~~Y~~~i~vGtP~q~~~l~~DTGS~~~wv~~~ 120 (345)
..-.+.+.|.+ .+..+++|+|++..+|...
T Consensus 20 ~vi~g~~~I~~--~~~~vLiDSGAThsFIs~~ 49 (135)
T PF08284_consen 20 DVITGTFLINS--IPASVLIDSGATHSFISSS 49 (135)
T ss_pred CeEEEEEEecc--EEEEEEEecCCCcEEccHH
Confidence 44678888884 9999999999999988543
No 51
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=21.02 E-value=94 Score=20.89 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=15.8
Q ss_pred EEEeCCCCceEEEEEEcCCCceeE
Q 019179 94 RISIGTPPTERLAVADTGSDLIWT 117 (345)
Q Consensus 94 ~i~vGtP~q~~~l~~DTGS~~~wv 117 (345)
.+.++ ...+..++|||+...-+
T Consensus 2 ~~~~~--~~~~~~liDtgs~~~~~ 23 (92)
T cd00303 2 KGKIN--GVPVRALVDSGASVNFI 23 (92)
T ss_pred EEEEC--CEEEEEEEcCCCccccc
Confidence 34555 37889999999886543
No 52
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=20.07 E-value=76 Score=29.44 Aligned_cols=32 Identities=19% Similarity=0.218 Sum_probs=22.4
Q ss_pred ccEEEE---EEeCCC------CceEEEEEEcCCCceeEeCC
Q 019179 89 ANYLIR---ISIGTP------PTERLAVADTGSDLIWTQCE 120 (345)
Q Consensus 89 ~~Y~~~---i~vGtP------~q~~~l~~DTGS~~~wv~~~ 120 (345)
..|.+. |.||.. .....+++|||+++++++..
T Consensus 208 ~~y~v~l~~i~vg~~~~~~~~~~~~~aivDSGTs~~~lp~~ 248 (326)
T cd06096 208 YYYYVKLEGLSVYGTTSNSGNTKGLGMLVDSGSTLSHFPED 248 (326)
T ss_pred ceEEEEEEEEEEcccccceecccCCCEEEeCCCCcccCCHH
Confidence 456544 567753 23456899999999999764
Done!