BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019180
(345 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9JK81|MYG1_MOUSE UPF0160 protein MYG1, mitochondrial OS=Mus musculus GN=Myg1 PE=2
SV=1
Length = 380
Score = 319 bits (818), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 166/326 (50%), Positives = 219/326 (67%), Gaps = 11/326 (3%)
Query: 24 RVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKVLDDLDAVLDVGGVYDPSNDCY 83
R+GTHNG+FHCDEAL C ++RL ++ NA+IVR+RDP+ L D V+DVGG Y+P + Y
Sbjct: 45 RIGTHNGTFHCDEALACALLRLLPEYANAEIVRTRDPEKLASCDIVVDVGGEYNPQSHRY 104
Query: 84 DHHQKGFEEVF-----GHGFSTKLSSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVY 138
DHHQ+ F E G + TKLSSAGLVY HFG++L+A+ L E V ++ +Y
Sbjct: 105 DHHQRTFTETMSSLCPGKPWQTKLSSAGLVYLHFGRKLLAQLLGTSEEDSVVDTIYDKMY 164
Query: 139 KNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERENEAFQQGM 198
+NF+E +DA+DNGI+Q+ + PRY T LS+RV +LN W +P+Q E F++ M
Sbjct: 165 ENFVEEVDAVDNGISQW-AEGEPRYAMTTTLSARVARLNPTWNQPNQDTE---AGFRRAM 220
Query: 199 DLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMVL-KRFCPWKLHLFELEE 257
DL +EFL + FY SWLPAR++V E +A+R+ D SGEI+ L K CPWK HL+ LE
Sbjct: 221 DLVQEEFLQRLNFYQHSWLPARALVEEALAQRFKVDSSGEIVELAKGGCPWKEHLYHLES 280
Query: 258 EMKIEPLIKYVLYEDDRGKQWRVQAVAVSPDRFESRKPLPAQWRGLRDDELSKEAGIPGC 317
E+ + I +V+Y D G QWRVQ V P F+SR PLP WRGLRD L + +GIPGC
Sbjct: 281 ELSPKVAITFVIYTDQAG-QWRVQCVPKEPHSFQSRLPLPEPWRGLRDKALDQVSGIPGC 339
Query: 318 VFVHMSGFIGGNQSYGGALAMARAAL 343
+FVH SGFIGG+ + GAL MARA L
Sbjct: 340 IFVHASGFIGGHHTREGALNMARATL 365
>sp|Q641W2|MYG1_RAT UPF0160 protein MYG1, mitochondrial OS=Rattus norvegicus GN=Myg1
PE=1 SV=1
Length = 381
Score = 317 bits (811), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 167/326 (51%), Positives = 217/326 (66%), Gaps = 11/326 (3%)
Query: 24 RVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKVLDDLDAVLDVGGVYDPSNDCY 83
R+GTHNG+FHCDEAL C ++RL ++ NA+IVR+RDP+ L D V+DVGG Y+P Y
Sbjct: 46 RIGTHNGTFHCDEALACALLRLLPEYRNAEIVRTRDPEKLALCDIVVDVGGEYNPQRHRY 105
Query: 84 DHHQKGFEEVF-----GHGFSTKLSSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVY 138
DHHQ+ F E G + TKLSSAGLVY HFG +L+A+ L E V ++ +Y
Sbjct: 106 DHHQRTFTETMSSLCPGKPWQTKLSSAGLVYLHFGHKLLAQLLGTSEEDSVVDTIYDKMY 165
Query: 139 KNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERENEAFQQGM 198
+NF+E +DA+DNGI+Q+ + PRY T LS+RV +LN W +PDQ E F++ M
Sbjct: 166 ENFVEEVDAVDNGISQW-AEGEPRYALTTTLSARVSRLNPTWNQPDQDTE---AGFRRAM 221
Query: 199 DLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMVL-KRFCPWKLHLFELEE 257
DL +EFL + FY SWLPAR++V E +A+R+ D SGEI+ L K CPWK HL+ LE
Sbjct: 222 DLVQEEFLQRLNFYQHSWLPARALVEEALAQRFKVDSSGEIVELAKGGCPWKEHLYHLES 281
Query: 258 EMKIEPLIKYVLYEDDRGKQWRVQAVAVSPDRFESRKPLPAQWRGLRDDELSKEAGIPGC 317
E+ I +V+Y D G QWRVQ V P F+SR PLP WRGLRD+ L + +GIPGC
Sbjct: 282 ELSPTVAITFVIYTDQAG-QWRVQCVPKEPHSFQSRLPLPEPWRGLRDEALDQVSGIPGC 340
Query: 318 VFVHMSGFIGGNQSYGGALAMARAAL 343
+FVH SGFIGG+ + GAL MARA L
Sbjct: 341 IFVHASGFIGGHHTREGALNMARATL 366
>sp|Q9HB07|MYG1_HUMAN UPF0160 protein MYG1, mitochondrial OS=Homo sapiens GN=C12orf10
PE=1 SV=2
Length = 376
Score = 316 bits (809), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 169/345 (48%), Positives = 220/345 (63%), Gaps = 11/345 (3%)
Query: 5 GVSSSPAYSTSSPSQTPLKRVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKVLD 64
G S P S R+GTHNG+FHCDEAL C ++RL ++ +A+IVR+RDP+ L
Sbjct: 27 GPESVPPPKRSRSKLMAPPRIGTHNGTFHCDEALACALLRLLPEYRDAEIVRTRDPEKLA 86
Query: 65 DLDAVLDVGGVYDPSNDCYDHHQKGFEEVF-----GHGFSTKLSSAGLVYKHFGKELIAK 119
D V+DVGG YDP YDHHQ+ F E G + TKLSSAGL+Y HFG +L+A+
Sbjct: 87 SCDIVVDVGGEYDPRRHRYDHHQRSFTETMSSLSPGKPWQTKLSSAGLIYLHFGHKLLAQ 146
Query: 120 ELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLD 179
L E V L+ +Y+NF+E +DA+DNGI+Q+ + PRY T LS+RV +LN
Sbjct: 147 LLGTSEEDSMVGTLYDKMYENFVEEVDAVDNGISQW-AEGEPRYALTTTLSARVARLNPT 205
Query: 180 WTEPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEI 239
W PDQ E F++ MDL +EFL + FY SWLPAR++V E +A+R+ DPSGEI
Sbjct: 206 WNHPDQDTE---AGFKRAMDLVQEEFLQRLDFYQHSWLPARALVEEALAQRFQVDPSGEI 262
Query: 240 MVL-KRFCPWKLHLFELEEEMKIEPLIKYVLYEDDRGKQWRVQAVAVSPDRFESRKPLPA 298
+ L K CPWK HL+ LE + I +V+Y D G QWR+Q V P F+SR PLP
Sbjct: 263 VELAKGACPWKEHLYHLESGLSPPVAIFFVIYTDQAG-QWRIQCVPKEPHSFQSRLPLPE 321
Query: 299 QWRGLRDDELSKEAGIPGCVFVHMSGFIGGNQSYGGALAMARAAL 343
WRGLRD+ L + +GIPGC+FVH SGF GG+ + GAL+MARA L
Sbjct: 322 PWRGLRDEALDQVSGIPGCIFVHASGFTGGHHTREGALSMARATL 366
>sp|Q58DG1|MYG1_BOVIN UPF0160 protein MYG1, mitochondrial OS=Bos taurus PE=2 SV=1
Length = 381
Score = 313 bits (803), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 164/326 (50%), Positives = 221/326 (67%), Gaps = 11/326 (3%)
Query: 24 RVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKVLDDLDAVLDVGGVYDPSNDCY 83
R+GTHNG+FHCDEAL C ++RL ++ A+IVR+RDP+ L D V+DVGG YDP Y
Sbjct: 46 RIGTHNGTFHCDEALACALLRLLPEYREAEIVRTRDPEKLAACDIVVDVGGEYDPQRHRY 105
Query: 84 DHHQKGFEEVF-----GHGFSTKLSSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVY 138
DHHQ+ F E G + TKLSSAGL+Y HFG +L+A+ L E V L+ +Y
Sbjct: 106 DHHQRSFTETMSSLSPGKPWQTKLSSAGLIYLHFGHKLLAQLLGTSEEDGMVGTLYDKMY 165
Query: 139 KNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERENEAFQQGM 198
+NF+E +DA+DNGI+Q++ + PRY+ T LS+RV +LN W +P+Q E F++ M
Sbjct: 166 ENFVEEVDAVDNGISQWEEGE-PRYLLTTTLSARVARLNPTWNQPNQDTE---AGFKRAM 221
Query: 199 DLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMVLKR-FCPWKLHLFELEE 257
DL +EFL + FY SWLPAR++V E +A+R+ DPSGEI+ L++ CPWK HL++LE
Sbjct: 222 DLVREEFLQRLDFYQNSWLPARTLVEEALAKRFQVDPSGEIIELEKGGCPWKEHLYQLEL 281
Query: 258 EMKIEPLIKYVLYEDDRGKQWRVQAVAVSPDRFESRKPLPAQWRGLRDDELSKEAGIPGC 317
+ I +V+Y D G QWRVQ V P F+SR PL WRGLRD+ L + +GIPGC
Sbjct: 282 GLSPAGTIAFVIYTDQAG-QWRVQCVPKEPHSFQSRLPLLEPWRGLRDEALDQISGIPGC 340
Query: 318 VFVHMSGFIGGNQSYGGALAMARAAL 343
+FVH SGFIGG+++ GAL+MARA L
Sbjct: 341 IFVHASGFIGGHRTREGALSMARATL 366
>sp|O17606|YK4P_CAEEL UPF0160 protein C27H6.8 OS=Caenorhabditis elegans GN=C27H6.8 PE=3
SV=2
Length = 340
Score = 311 bits (798), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 156/328 (47%), Positives = 215/328 (65%), Gaps = 12/328 (3%)
Query: 25 VGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKVLDDLDAVLDVGGVYDPSNDCYD 84
+GTH+G FHCDEA CFM++ +F + I+R+RD L+ D ++DVGG++D S YD
Sbjct: 5 IGTHSGKFHCDEAFACFMLKQLPQFKDHSILRTRDAAQLEKCDIIVDVGGIFDHSKQRYD 64
Query: 85 HHQKGFEEVFGH----GFSTKLSSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKN 140
HHQ+GF + F TKLSSAGLVY H+G+E+I + L + + + +Y+
Sbjct: 65 HHQRGFTDTMRTLEKLNFDTKLSSAGLVYAHYGREVINQILGGNVSSSMIDLFYHRLYEQ 124
Query: 141 FMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERENEAFQQGMDL 200
F+E+IDAIDNGI+QYD PRY ++ NLSSR G+ N W EP+ A+ E FQQ M
Sbjct: 125 FVESIDAIDNGISQYDG--VPRYHSSGNLSSRTGQFNSHWNEPENDAD---ERFQQAMQF 179
Query: 201 AGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMVLKRF-CPWKLHLFELEEEM 259
G+EF +V++ W PAR I+ + +R++ D SG I++++ CPWK H F++E E
Sbjct: 180 IGEEFSRSVKYLANVWWPAREIIEAAVDKRFEIDASGRIILIENGGCPWKEHFFDIEVEK 239
Query: 260 KI-EPLIKYVLYEDDRGKQWRVQAVAVSP-DRFESRKPLPAQWRGLRDDELSKEAGIPGC 317
I + I Y+L+ D WRVQA+ V FE+R PLPA WRGLRDD+LSKE+GIPG
Sbjct: 240 NIADDNITYILFSDSTNASWRVQAIPVDKMSSFENRMPLPAAWRGLRDDDLSKESGIPGG 299
Query: 318 VFVHMSGFIGGNQSYGGALAMARAALKL 345
VFVH+SGFIGGN + GA+AMAR AL++
Sbjct: 300 VFVHISGFIGGNLTREGAIAMARKALEI 327
>sp|Q55G91|U160_DICDI UPF0160 protein OS=Dictyostelium discoideum GN=DDB_G0267768 PE=3
SV=1
Length = 329
Score = 308 bits (788), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 147/319 (46%), Positives = 212/319 (66%), Gaps = 4/319 (1%)
Query: 25 VGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKVLDDLDAVLDVGGVYDPSNDCYD 84
+ TH+GSFH DEAL C++++L + +++I+RSRD V++ +DVG VY+ +D
Sbjct: 6 ICTHSGSFHADEALACYLLKLLPTYKDSKIIRSRDKSVIEKSTVAVDVGAVYNFEKLRFD 65
Query: 85 HHQKGFEEVFGHGFSTKLSSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEA 144
HHQ GF E F KLSSAGL+YKH+GK++I + L+ ++ ++ L+ +Y + ++
Sbjct: 66 HHQSGFTETFDDKHDIKLSSAGLIYKHYGKDIIKQRLDTNDSITEL--LYQKLYDSMIQE 123
Query: 145 IDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERENEAFQQGMDLAGKE 204
+D +DNG+ +Y +D PRY + +++S+RVG LN W EP Q E N+ F++ M+L G+
Sbjct: 124 LDGVDNGVERYPSDIKPRYQSGSSISARVGHLNQGWNEP-QDDEIVNKQFEKAMELMGQY 182
Query: 205 FLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMVLKRFCPWKLHLFELEEEMKIEPL 264
FLD + +Y +SWLP RSIV + R SGEI++L FCPWK HLF LE+E I+
Sbjct: 183 FLDRLDYYGKSWLPCRSIVENALENRKQTHSSGEILILDMFCPWKDHLFSLEQEKDIKTP 242
Query: 265 IKYVLYEDDRGKQWRVQAVAVSPDRFESRKPLPAQWRGLRDDELSKEAGIPGCVFVHMSG 324
IK+VL+ED G QWRV AV ++ F R PLP +WRG RD+ELS+ +GI GCVF H +G
Sbjct: 243 IKFVLFEDTSG-QWRVSAVGINLHSFTLRLPLPEEWRGKRDEELSQISGIEGCVFAHANG 301
Query: 325 FIGGNQSYGGALAMARAAL 343
FIGGN++ GAL MA L
Sbjct: 302 FIGGNKTREGALLMAIKTL 320
>sp|Q9P7T6|YIW4_SCHPO UPF0160 protein C694.04c OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=SPAC694.04c PE=3 SV=1
Length = 324
Score = 301 bits (771), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 152/325 (46%), Positives = 208/325 (64%), Gaps = 12/325 (3%)
Query: 22 LKRVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKVLDDLDAVLDVGGVYDPSND 81
L ++ TH+G+FH DEAL +M+R D+F AQIVRSRDP+VLD D ++DVGG YD
Sbjct: 4 LVKIATHSGTFHADEALAVYMLRRLDRFSGAQIVRSRDPQVLDSCDIIVDVGGKYD-GIK 62
Query: 82 CYDHHQKGFEEVFGHGFSTKLSSAGLVYKHFGKELI---AKELNVDEGHPDVHRLFLAVY 138
+DHHQ+ F + F +ST+LSSAGL+YKHFG+E+I +L ++E D+ L+ VY
Sbjct: 63 YFDHHQREFNDTFSPKYSTRLSSAGLIYKHFGREVIHAVLPQLKINE--QDLETLYEKVY 120
Query: 139 KNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERENEAFQQGM 198
++F+E +DA DNGI+ Y P + +L V W Q + E FQ+
Sbjct: 121 QSFVEGLDANDNGISAYPAGLKPSFKAAMSLPEMVSSFLPAWNSEKQDDQTYLECFQKAS 180
Query: 199 DLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMVLKRFCPWKLHLFELEEE 258
DL G F+ +V Y SWLPA+++ E I + D I+++ +F PWK HLF++E+E
Sbjct: 181 DLMGTWFVRSVEHYALSWLPAKTLAREAILKAKD----SPILIVDQFFPWKGHLFDIEKE 236
Query: 259 MKIEPLIKYVLYEDDRGKQWRVQAVAVSPDRFESRKPLPAQWRGLRDDELSKEAGIPGCV 318
+ IE KY +Y D GK WRVQAV++ P F R PLP WRG+RD++LS+ GIPGC+
Sbjct: 237 LGIENQFKYAIYSD--GKAWRVQAVSIDPTSFTCRLPLPEPWRGIRDEKLSELTGIPGCI 294
Query: 319 FVHMSGFIGGNQSYGGALAMARAAL 343
FVH SGFIGGNQ++ GAL MAR AL
Sbjct: 295 FVHASGFIGGNQTFEGALEMARKAL 319
>sp|P40093|YEY6_YEAST UPF0160 protein YER156C OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YER156C PE=1 SV=1
Length = 338
Score = 284 bits (727), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 143/326 (43%), Positives = 212/326 (65%), Gaps = 8/326 (2%)
Query: 23 KRVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKVLDDLDAVLDVGGVYDPSNDC 82
K++ TH+GSFH DE+L +M+RL +F +A++VRSR+PK + D ++DVG YD
Sbjct: 15 KQICTHSGSFHADESLAVYMLRLLPEFKDAKLVRSRNPKDWEASDILVDVGAQYDGVK-F 73
Query: 83 YDHHQKGFEEVFGHGFSTKLSSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFM 142
+DHHQ+GF E F + TKLSSAGL++KH+G+++I LN D+ L+ VYK F+
Sbjct: 74 FDHHQRGFFETFNEKYKTKLSSAGLIFKHYGRDIIKTILNNKVSSSDLDLLYDKVYKQFV 133
Query: 143 EAIDAIDNGINQY----DTDKPPRYVNNT-NLSSRVGKLNLDWTEPDQSAERENEAFQQG 197
EA+DA DNGI++Y D++ P + +N ++ + +N +W E D S E + F +
Sbjct: 134 EALDANDNGISKYTIPKDSNLEPNFRDNAISIPGIISGMNPNWNE-DTSDESFDRCFARA 192
Query: 198 MDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMVLKRFCPWKLHLFELEE 257
+ G F+ VR Y +SWLPA+++V + I ER D D SG+I+VL +FCPWK HL+ELE
Sbjct: 193 SEFIGGVFVTLVRGYGQSWLPAKALVAQAIDERMDVDKSGKIIVLPQFCPWKEHLYELER 252
Query: 258 EMKIEPLIKYVLYEDDRGKQWRVQAVAVSPDRFESRKPLPAQWRGLRDDELSKEAGIPGC 317
E IE I++VL+ D G WRV V ++ F+ R+ LP RGLRD+ELS ++G+PGC
Sbjct: 253 EKNIEKQIEFVLFTDSSG-AWRVSTVPINSTSFQFRRGLPEPLRGLRDEELSTKSGVPGC 311
Query: 318 VFVHMSGFIGGNQSYGGALAMARAAL 343
+F+H +GFIGG +S +A+ +L
Sbjct: 312 IFIHAAGFIGGAKSKEAVYELAKMSL 337
>sp|Q9Z862|Y489_CHLPN UPF0160 protein CPn_0489/CP_0265/CPj0489/CpB0509 OS=Chlamydia
pneumoniae GN=CPn_0489 PE=3 SV=2
Length = 290
Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 133/310 (42%), Gaps = 46/310 (14%)
Query: 19 QTPLKRVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKVLDDLDAVLDVGGVYDP 78
Q P + +GTH+GSFH DE C ++ + D +I+RSRDP VL + V DVGGVY
Sbjct: 2 QIP-RSIGTHDGSFHADEVTACALLIIFDLVDENKIIRSRDPVVLSKCEYVCDVGGVYSI 60
Query: 79 SNDCYDHHQKGFEEVFGHGFSTKLSSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVY 138
N +DHHQ ++ SSAG++ H+ KE ++ +E H FL
Sbjct: 61 ENKRFDHHQVSYD--------GSWSSAGMIL-HYLKEF--GYMDCEEYH------FLN-- 101
Query: 139 KNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERENEA-FQQG 197
+ +D DNG R+ + S + + P + E ++A F
Sbjct: 102 NTLVHGVDEQDNG----------RFFSKEGFCSFSDIIKI--YNPREEEETNSDADFSCA 149
Query: 198 MDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMVLKRFCPWKLHLFELEE 257
+ +FL +R + R IV E + + + R W+ + F L
Sbjct: 150 LHFT-IDFLCRLRKKFQYDRVCRGIVREAM------ETEDMCLYFDRPLAWQENFFFLGG 202
Query: 258 EMKIEPLIKYVLYEDDRGKQWRVQAVAVSPD-RFESRKPLPAQWRGLRDDELSKEAGIPG 316
E + + QW ++ + + D R E R P P W GL ELSK +GIPG
Sbjct: 203 EKHPAAFVCF-----PSCDQWILRGIPPNLDRRMEVRVPFPENWAGLLGKELSKVSGIPG 257
Query: 317 CVFVHMSGFI 326
VF H F+
Sbjct: 258 AVFCHKGLFL 267
>sp|O84391|Y386_CHLTR UPF0160 protein CT_386 OS=Chlamydia trachomatis (strain D/UW-3/Cx)
GN=CT_386 PE=3 SV=2
Length = 289
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 79/317 (24%), Positives = 128/317 (40%), Gaps = 61/317 (19%)
Query: 19 QTPLKRVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKVLDDLDAVLDVGGVYDP 78
Q P + VGTH+GSFH DE C ++ + D +IVR+RDP+ L + V DVGG Y
Sbjct: 2 QIP-RSVGTHDGSFHADEVTACALLIMFDLVDENKIVRTRDPQKLAQCEYVCDVGGRYST 60
Query: 79 SNDCYDHHQKGFEEVFGHGFSTKLSSAGLVYKHF-GKELIAKELNVDEGHPDVHRLFLAV 137
+ +DHHQ ++ SSAG+V + G ++ H + +
Sbjct: 61 EHKRFDHHQV--------SYTGSWSSAGMVLDYLHGLGFLS------------HDEYEYL 100
Query: 138 YKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERENEAFQQG 197
+ +D DNG R+ + S + + ++G
Sbjct: 101 NNTLVHGVDEQDNG----------RFFSKEGFCSFSDIIKI------------YNPLEEG 138
Query: 198 MDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMVLKRFC-------PWKL 250
+ KEF +RF + R + +R D ++M + C W+
Sbjct: 139 GN-TDKEFFFALRFAIDLLTRLRE---KFCYDRVCRDIVKQVMEKESVCLRFDRPLAWQE 194
Query: 251 HLFELEEEMKIEPLIKYVLYEDDRGKQWRVQAVAVSPD-RFESRKPLPAQWRGLRDDELS 309
+ F L E + + + QW ++ + + D R E R P P +W GL D+L
Sbjct: 195 NFFSLGGESHPAAFVSFPCSD-----QWILRGIPPTLDRRMEVRIPFPEEWAGLLGDQLV 249
Query: 310 KEAGIPGCVFVHMSGFI 326
+ GIPG +F H F+
Sbjct: 250 QATGIPGAIFCHKGLFL 266
>sp|Q9PK08|Y665_CHLMU UPF0160 protein TC_0665 OS=Chlamydia muridarum (strain MoPn / Nigg)
GN=TC_0665 PE=3 SV=2
Length = 289
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/311 (25%), Positives = 127/311 (40%), Gaps = 49/311 (15%)
Query: 19 QTPLKRVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKVLDDLDAVLDVGGVYDP 78
Q P + VGTH+GSFH DE C ++ + D +I+R+RD + L + V DVGG Y
Sbjct: 2 QIP-RSVGTHDGSFHADEVTACALLIMFDLVDKDKIIRTRDSEKLAQCEYVCDVGGRYSI 60
Query: 79 SNDCYDHHQKGFEEVFGHGFSTKLSSAGLV--YKHFGKELIAKELNVDEGHPDVHRLFLA 136
++ +DHHQ ++ SSAG+V Y H L H +
Sbjct: 61 ADKRFDHHQV--------SYTGSWSSAGMVLDYLHHLGSL-------------PHEEYEY 99
Query: 137 VYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERENEAFQQ 196
+ + +D DNG R+ + S + + P + ++ F
Sbjct: 100 LNSTLVHGVDEQDNG----------RFFSKEGFCSFSDIIKI--YNPLEEGGNTDKEFFF 147
Query: 197 GMDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMVLKRFCPWKLHLFELE 256
+ A + L +R R R +V + + E+ D + R W+ + F L
Sbjct: 148 ALHFA-IDLLTRLREKFRYDRICRDVVKQ-VMEKEDV-----CLRFDRPLAWQENFFSLG 200
Query: 257 EEMKIEPLIKYVLYEDDRGKQWRVQAVAVSPD-RFESRKPLPAQWRGLRDDELSKEAGIP 315
E + + + QW ++ + + D R E R P P W GL D+L K GIP
Sbjct: 201 GENHPAAFVSFPCSD-----QWILRGIPPTLDRRMEVRIPFPEDWAGLLGDQLVKATGIP 255
Query: 316 GCVFVHMSGFI 326
G +F H F+
Sbjct: 256 GAIFCHKGLFL 266
>sp|Q2M021|TTC36_DROPS Tetratricopeptide repeat protein 36 homolog OS=Drosophila
pseudoobscura pseudoobscura GN=GA12762 PE=3 SV=1
Length = 185
Score = 35.0 bits (79), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 27 THNGSFHCDEALGCFMIRLTD----KFFN--AQIVR--SRDPKVLDDLDAVLDVGGVYDP 78
T GSF DEAL F + L N AQ +R RD + LDDL+ L++
Sbjct: 64 TEKGSF--DEALKVFQLALNQAQRASVLNNRAQTLRLAKRDGEALDDLNKALEMASDQQS 121
Query: 79 SNDCYDHHQKG 89
C+ H Q+G
Sbjct: 122 RTKCHAHCQRG 132
>sp|Q9INJ1|RDRP_BAVJK RNA-directed RNA polymerase VP1 OS=Banna virus (strain
Indonesia/JKT-6423/1980) PE=3 SV=1
Length = 1214
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 79/204 (38%), Gaps = 36/204 (17%)
Query: 25 VGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKVLDDLDAVLDVGGVYDPSNDCYD 84
V + G H E L M +K N + ++ D KV+ D + + + SN C
Sbjct: 964 VNPNGGGIHISEGLKRLMPEYCEKHLNELVYKTLDDKVIRDYTSDIII------SNICKG 1017
Query: 85 HHQKGFEEVFGHGFSTKLSSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEA 144
K + F F L++ V + L DEG +VHR+ Y+N +
Sbjct: 1018 KLSKAPKLAFYANFYLSLTNTNGVDSPY--------LTADEGVKNVHRVIGLSYRNTLST 1069
Query: 145 IDAIDNGINQYDTDKP---PRYVNNTNLSSRVGKLN-------------LDWTEPDQSAE 188
+ + +++ + P P Y+ ++ +G L+ LD TEP +A
Sbjct: 1070 --SPTSNVDRILRNNPGSAPAYLTGNDI---LGVLSDYPYQNWRTVVELLDITEPSATAI 1124
Query: 189 RENEAFQQGMDLAGKEFLDTVRFY 212
E Q LA K+ L+T +
Sbjct: 1125 IEVATNQMHAYLADKD-LNTANLF 1147
>sp|Q68DY9|ZN772_HUMAN Zinc finger protein 772 OS=Homo sapiens GN=ZNF772 PE=2 SV=2
Length = 489
Score = 33.1 bits (74), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 292 SRKPLPAQWRGLRDDELSKEAGIPGCVFVHMSGFIGGNQSYGGA 335
SRKP+ AQ + + E+ E GI G VF H S I + + GA
Sbjct: 304 SRKPILAQHQRIHTGEMPYECGICGKVFNHSSNLIVHQRVHTGA 347
>sp|A8G9P6|RAPA_SERP5 RNA polymerase-associated protein RapA OS=Serratia proteamaculans
(strain 568) GN=rapA PE=3 SV=1
Length = 968
Score = 32.7 bits (73), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 227 IAERYDYDPSGEIMVL----KRFCPWKLHLF-ELEEEMKIEPLIKYVLYEDDRGKQWRVQ 281
+AE+ Y P + + L +R KL+L EL +E IEPL+K + D +Q R +
Sbjct: 343 VAEQQKYRPVADAVTLLLSGERLADDKLNLLGELIDEQDIEPLLKAANSDSDNSEQARQE 402
Query: 282 AVAVSPDRFESRKPL 296
V + DR + + L
Sbjct: 403 LVTMLMDRHGTSRVL 417
>sp|Q0BWJ8|ACCD_HYPNA Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Hyphomonas neptunium (strain ATCC 15444) GN=accD PE=3
SV=1
Length = 326
Score = 32.3 bits (72), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 25/109 (22%)
Query: 259 MKIEPLIKY-VLYEDDRGKQWRVQAVAVSPDRFESRKPLPAQWRGLRDDELSKE------ 311
++I P +++ +L++D+R + + V + P +F+ KP PA+ + + L+++
Sbjct: 54 LRISPRMRFRILFDDERWEPISLPQVPLDPLKFKDDKPYPARLKAAKAKILNRDIKETED 113
Query: 312 ------------------AGIPGCVFVHMSGFIGGNQSYGGALAMARAA 342
G+P V V F+GG+ A AA
Sbjct: 114 GGAPLLQEDCMVAAYGKIGGVPAVVLVQDFEFMGGSLGMAAGEAFITAA 162
>sp|O01510|SMG1_CAEEL Serine/threonine-protein kinase smg-1 OS=Caenorhabditis elegans
GN=smg-1 PE=1 SV=3
Length = 2322
Score = 32.0 bits (71), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 14/110 (12%)
Query: 108 VYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNT 167
+++ F EL E + HP+V+ LF+ + F+ + A D I Q D V
Sbjct: 475 IFEFFSSELPLTEYWLASNHPEVYHLFITI---FVGHLKAHDFYIVQSD-----YIVRGD 526
Query: 168 NLSSRVGKLNLDWTEPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWL 217
++ +G+ D+ A ++ A Q+ ++ G + R + SWL
Sbjct: 527 SIGQSIGQTKRDY------ARKQVVALQKIINNFGDKLWKKTRLMISSWL 570
>sp|Q8CXS3|TGT_LEPIN Queuine tRNA-ribosyltransferase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar Lai (strain 56601) GN=tgt
PE=3 SV=1
Length = 374
Score = 32.0 bits (71), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 126 GHPDVHR-LFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNL---DWT 181
H D +R L+L + +D + NG++ +D P R N + + +GK+NL W
Sbjct: 235 AHTDRNRPLYLMGVGTVPDILDGVKNGVDMFDCVLPTRNARNGQVFTTLGKINLRNEKWK 294
Query: 182 EPD 184
D
Sbjct: 295 SSD 297
>sp|Q72TL3|TGT_LEPIC Queuine tRNA-ribosyltransferase OS=Leptospira interrogans serogroup
Icterohaemorrhagiae serovar copenhageni (strain Fiocruz
L1-130) GN=tgt PE=3 SV=1
Length = 374
Score = 32.0 bits (71), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 126 GHPDVHR-LFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNL---DWT 181
H D +R L+L + +D + NG++ +D P R N + + +GK+NL W
Sbjct: 235 AHTDRNRPLYLMGVGTVPDILDGVKNGVDMFDCVLPTRNARNGQVFTTLGKINLRNEKWK 294
Query: 182 EPD 184
D
Sbjct: 295 SSD 297
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,914,153
Number of Sequences: 539616
Number of extensions: 6231354
Number of successful extensions: 13652
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 13598
Number of HSP's gapped (non-prelim): 32
length of query: 345
length of database: 191,569,459
effective HSP length: 118
effective length of query: 227
effective length of database: 127,894,771
effective search space: 29032113017
effective search space used: 29032113017
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)