Query 019180
Match_columns 345
No_of_seqs 118 out of 351
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 07:21:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019180.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019180hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2948 Predicted metal-bindin 100.0 3E-135 7E-140 958.1 29.5 320 22-345 4-323 (327)
2 PF03690 UPF0160: Uncharacteri 100.0 3E-132 8E-137 963.2 33.8 318 23-344 1-318 (318)
3 COG4286 Uncharacterized conser 100.0 2E-107 5E-112 764.5 27.2 305 20-344 2-306 (306)
4 PRK11709 putative L-ascorbate 56.3 18 0.00038 36.5 4.8 39 67-105 313-354 (355)
5 PF03681 UPF0150: Uncharacteri 50.9 14 0.00031 25.9 2.4 18 327-344 26-43 (48)
6 COG2404 Predicted phosphohydro 45.9 5.4 0.00012 40.1 -0.7 33 81-114 86-126 (339)
7 PHA02094 hypothetical protein 40.5 30 0.00065 27.3 2.8 42 107-148 1-53 (81)
8 PLN02707 Soluble inorganic pyr 35.7 71 0.0015 31.3 5.2 71 274-344 174-249 (267)
9 TIGR03609 S_layer_CsaB polysac 33.5 30 0.00065 32.9 2.3 38 35-74 14-73 (298)
10 TIGR03793 TOMM_pelo TOMM prope 32.9 7.8 0.00017 30.9 -1.5 12 302-313 65-76 (77)
11 PF05595 DUF771: Domain of unk 32.5 25 0.00055 28.5 1.4 18 266-283 60-77 (91)
12 PF00386 C1q: C1q domain; Int 27.8 28 0.0006 29.0 0.9 22 68-89 24-45 (127)
13 PRK15008 HTH-type transcriptio 27.2 51 0.0011 29.7 2.6 35 104-149 51-85 (212)
14 PF04542 Sigma70_r2: Sigma-70 25.8 2.5E+02 0.0054 20.0 5.7 42 109-150 2-43 (71)
15 PRK10017 colanic acid biosynth 24.9 65 0.0014 33.3 3.1 12 63-74 115-126 (426)
16 PF04369 Lactococcin: Lactococ 23.7 60 0.0013 25.0 1.9 26 300-326 7-32 (60)
17 PF11009 DUF2847: Protein of u 23.5 2.5E+02 0.0054 23.7 5.8 35 217-251 59-95 (105)
18 smart00110 C1Q Complement comp 22.8 44 0.00096 28.9 1.2 22 68-89 30-51 (135)
19 TIGR00644 recJ single-stranded 22.6 1.1E+02 0.0024 32.3 4.4 30 313-342 389-418 (539)
20 PRK14538 putative bifunctional 22.5 1.2E+03 0.025 26.6 14.5 62 264-343 617-678 (838)
21 PF10949 DUF2777: Protein of u 22.4 26 0.00056 32.6 -0.3 53 282-334 74-140 (185)
22 PF05914 RIB43A: RIB43A; Inte 20.1 76 0.0016 32.5 2.4 26 287-312 261-286 (379)
23 PF06449 DUF1082: Mitochondria 20.0 1.2E+02 0.0025 22.4 2.7 24 259-282 22-49 (51)
No 1
>KOG2948 consensus Predicted metal-binding protein [General function prediction only]
Probab=100.00 E-value=3.2e-135 Score=958.12 Aligned_cols=320 Identities=62% Similarity=1.099 Sum_probs=311.5
Q ss_pred CceEEecCCCccchhHHHHHHHhhccccCCceEEEcCCCCCCCCccEEEecCCcccCCCCCCCCCCCCccccccCCCccc
Q 019180 22 LKRVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKVLDDLDAVLDVGGVYDPSNDCYDHHQKGFEEVFGHGFSTK 101 (345)
Q Consensus 22 ~~~IgTH~G~FHaDEvlA~~~L~~l~~y~~a~iiRTRd~~~l~~cDiVvDVGgvYDp~~~rfDHHQr~F~~t~~~~~~~~ 101 (345)
+++||||||+|||||+|||+|||++|+|+||+|+|||||++|+.|||||||||+|||+++|||||||+|++||+.+++||
T Consensus 4 ~~~i~THnG~FH~DEalAc~mLr~lp~f~dAeIvRtRd~~~l~s~DIvvDVGg~yDp~~~ryDHHQr~F~ETfs~~~~tK 83 (327)
T KOG2948|consen 4 TKKIGTHNGTFHCDEALACFMLRLLPEFKDAEIVRTRDPKVLESCDIVVDVGGVYDPEKKRYDHHQRGFFETFSPKYKTK 83 (327)
T ss_pred CceEEecCCceehhHHHHHHHHHhccccCCCeeEecCCHHHHhhcCEEEecCccccccccccchhhhhhhhhcCCcccee
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCCccccCCChhhhhccCCCCCC
Q 019180 102 LSSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWT 181 (345)
Q Consensus 102 lSSAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kiy~~fi~~iDaiDNGv~~~~~~~~~~y~~~~~ls~~I~~lNP~w~ 181 (345)
||||||||||||+++|+++++...++++++.+|.+||++||+++|||||||++|. +++|+|..+|+||+||++|||.||
T Consensus 84 LSSAGLIykhyG~~vi~~~l~~~~s~~~~~~l~~kvY~~Fve~~DAiDNGi~~y~-~~~Pry~~~~~l~~rv~~~N~~w~ 162 (327)
T KOG2948|consen 84 LSSAGLIYKHYGREVISKILQNKVSSSDLDLLYDKVYKNFVEALDAIDNGISQYG-EIEPRYKSSTSLSHRVGRFNPDWN 162 (327)
T ss_pred ecccceeHHHhhHHHHHHHhcccCChhHHHHHHHHHHHHHHHHhhccccchhhhc-CCCCccccccchHHHHhhcCCCcc
Confidence 9999999999999999999988889999999999999999999999999999994 789999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHhcCcCCCCcEEEEeccCCchhhHHHhHhhhcc
Q 019180 182 EPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMVLKRFCPWKLHLFELEEEMKI 261 (345)
Q Consensus 182 ~~~~~~~~~d~~F~~A~~l~~~ef~~~v~~~~~~~lpAr~~V~~A~~~r~~~~~sg~Il~l~~~~Pwk~~l~~lE~e~~~ 261 (345)
+. ++++++++|.+||+++|++|++.|..++++|+|||++|++|+++|+++|+||.|++++++||||+|||+||+|+++
T Consensus 163 e~--~~~~~~e~F~~Am~~vg~ef~~~v~~~~~sWlPar~~v~~ai~er~~~d~sG~i~v~~~~cPWk~hlfelE~e~~i 240 (327)
T KOG2948|consen 163 ED--SDDDEDERFQRAMDLVGKEFVNSVKFYANSWLPARELVEEAIAERFDVDPSGIILVLKQFCPWKEHLFELEKEYKI 240 (327)
T ss_pred cC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHhcCCCCCceEEEecCCCchHHHHHHHHHHhCC
Confidence 84 4578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEecCCCCCeEEEEEeCCCCCCcCCCCCCcccCCCChhHhhhhhCCCCceEeecCCcccccCCHHHHHHHHHH
Q 019180 262 EPLIKYVLYEDDRGKQWRVQAVAVSPDRFESRKPLPAQWRGLRDDELSKEAGIPGCVFVHMSGFIGGNQSYGGALAMARA 341 (345)
Q Consensus 262 ~~~i~fvi~p~~~~~~wriq~Vp~~~~sF~~R~~LPe~WrGlrdeeL~~~sGI~g~vF~H~sGFigg~kt~egAl~mA~~ 341 (345)
+.+|+||||+| .+++|||||||+.++||++|+|||++|||||||||+++||||||+|||+|||||||+|+||||+||++
T Consensus 241 e~~i~fvlf~d-~~~~wRVqaVpv~p~sFe~R~pLp~~WRGLrdeeLs~~SgIpgc~FVH~SGFIGgn~T~EgAl~Mar~ 319 (327)
T KOG2948|consen 241 EVKIKFVLFTD-ESGSWRVQAVPVDPGSFESRKPLPEPWRGLRDEELSEVSGIPGCIFVHASGFIGGNKTREGALEMARK 319 (327)
T ss_pred CcceEEEEEeC-CCCcEEEEEEecCCCcccccCCCchhhccccchhhhhhcCCCCeEEEeecccccCcccHHHHHHHHHH
Confidence 99999999998 45699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcC
Q 019180 342 ALKL 345 (345)
Q Consensus 342 al~~ 345 (345)
||++
T Consensus 320 sl~~ 323 (327)
T KOG2948|consen 320 SLEA 323 (327)
T ss_pred hhcc
Confidence 9964
No 2
>PF03690 UPF0160: Uncharacterised protein family (UPF0160); InterPro: IPR003226 The function of this domain is not known, but it is found in several uncharacterised proteins and a probable metal dependent protein hydrolase.
Probab=100.00 E-value=3.5e-132 Score=963.23 Aligned_cols=318 Identities=57% Similarity=1.019 Sum_probs=309.4
Q ss_pred ceEEecCCCccchhHHHHHHHhhccccCCceEEEcCCCCCCCCccEEEecCCcccCCCCCCCCCCCCccccccCCCcccc
Q 019180 23 KRVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKVLDDLDAVLDVGGVYDPSNDCYDHHQKGFEEVFGHGFSTKL 102 (345)
Q Consensus 23 ~~IgTH~G~FHaDEvlA~~~L~~l~~y~~a~iiRTRd~~~l~~cDiVvDVGgvYDp~~~rfDHHQr~F~~t~~~~~~~~l 102 (345)
|+||||||+|||||||||+|||+||+|++++|+|||||++|++|||||||||+|||+++|||||||+|++||..+++|||
T Consensus 1 K~I~TH~G~FHaDEvlA~~lL~~l~~y~~~~IvRTRd~~~l~~cDiVvDVGg~yDp~~~rfDHHQ~~f~~tf~~~~~~~l 80 (318)
T PF03690_consen 1 KKIGTHSGSFHADEVLACALLKLLPEYKDAEIVRTRDPEVLEKCDIVVDVGGVYDPEKGRFDHHQRGFNETFSRENGIKL 80 (318)
T ss_pred CeEEecCCCcchHHHHHHHHHHHccccCCCcEEEeCChhhhccCCEEEecCCccccccCccccccccCccccccCCCcee
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999988899999
Q ss_pred ccchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCCccccCCChhhhhccCCCCCCC
Q 019180 103 SSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTE 182 (345)
Q Consensus 103 SSAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kiy~~fi~~iDaiDNGv~~~~~~~~~~y~~~~~ls~~I~~lNP~w~~ 182 (345)
|||||||+|||+++|+++++.+.++++++.+|++||++||++|||||||++++ +++++|.++|+||+||++|||.||+
T Consensus 81 SSAGLIy~~fG~~ii~~~~~~~~~~~~~~~l~~~iy~~fv~~iDaiDNGv~~~--~~~~~y~~~~~ls~~V~~~Np~w~~ 158 (318)
T PF03690_consen 81 SSAGLIYKHFGKEIIRNLLGDPVDEEDIELLYEKIYESFVESIDAIDNGVSIY--DGEPKYKINTSLSSRVSRLNPSWNE 158 (318)
T ss_pred ecccHHHHHHHHHHHHHhcCcCCChHHHHHHHHHHHHHHHHHhhhhhcCCccc--CccccccCCCCHHHHHHHhCCCCCC
Confidence 99999999999999999998888999999999999999999999999999999 4689999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHhcCcCCCCcEEEEeccCCchhhHHHhHhhhccC
Q 019180 183 PDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMVLKRFCPWKLHLFELEEEMKIE 262 (345)
Q Consensus 183 ~~~~~~~~d~~F~~A~~l~~~ef~~~v~~~~~~~lpAr~~V~~A~~~r~~~~~sg~Il~l~~~~Pwk~~l~~lE~e~~~~ 262 (345)
+ .++++++++|++||+|++++|.++|+++..+|+|||++|++|+++|+++|+||+||+|+++||||+||++||++++++
T Consensus 159 ~-~~~~~~~~~F~~A~~l~~~~f~~~v~~~~~~wlpAr~~V~~A~~~r~~v~~sg~Il~l~~~~Pwk~~l~~le~e~~~~ 237 (318)
T PF03690_consen 159 P-DDDEDEDERFEKAMELAGEEFENRVKYYAKSWLPARSIVEEAIENRFEVHPSGRILVLDRSCPWKEHLFELEEELKIE 237 (318)
T ss_pred C-CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhccCCCCCEEEecCCCcHHHHHHHHhhhhCCC
Confidence 7 335789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEecCCCCCeEEEEEeCCCCCCcCCCCCCcccCCCChhHhhhhhCCCCceEeecCCcccccCCHHHHHHHHHHH
Q 019180 263 PLIKYVLYEDDRGKQWRVQAVAVSPDRFESRKPLPAQWRGLRDDELSKEAGIPGCVFVHMSGFIGGNQSYGGALAMARAA 342 (345)
Q Consensus 263 ~~i~fvi~p~~~~~~wriq~Vp~~~~sF~~R~~LPe~WrGlrdeeL~~~sGI~g~vF~H~sGFigg~kt~egAl~mA~~a 342 (345)
++|+|||||+ .+++|||||||++++||++|+|||++|||||||||+++|||+||+|||+|||||||+|+||||+||++|
T Consensus 238 ~~i~fvi~p~-~~~~wriq~Vp~~~~sF~~R~~LP~~WrGlrdeeL~~vsGI~g~vFvH~sGFigg~kt~egAl~mA~~a 316 (318)
T PF03690_consen 238 GEILFVIYPD-GSGGWRIQAVPVSPGSFENRKPLPEEWRGLRDEELSEVSGIPGAVFVHASGFIGGAKTREGALEMARKA 316 (318)
T ss_pred CceEEEEEEC-CCCCEEEEEecCCCCCcccccCCChhhCCCCHHHHHHhcCCCCcEEEcCCCCeeecCCHHHHHHHHHHH
Confidence 9999999998 568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hc
Q 019180 343 LK 344 (345)
Q Consensus 343 l~ 344 (345)
|+
T Consensus 317 Le 318 (318)
T PF03690_consen 317 LE 318 (318)
T ss_pred hC
Confidence 96
No 3
>COG4286 Uncharacterized conserved protein related to MYG1 family [Function unknown]
Probab=100.00 E-value=2.5e-107 Score=764.51 Aligned_cols=305 Identities=46% Similarity=0.850 Sum_probs=283.3
Q ss_pred CCCceEEecCCCccchhHHHHHHHhhccccCCceEEEcCCCCCCCCccEEEecCCcccCCCCCCCCCCCCccccccCCCc
Q 019180 20 TPLKRVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPKVLDDLDAVLDVGGVYDPSNDCYDHHQKGFEEVFGHGFS 99 (345)
Q Consensus 20 ~~~~~IgTH~G~FHaDEvlA~~~L~~l~~y~~a~iiRTRd~~~l~~cDiVvDVGgvYDp~~~rfDHHQr~F~~t~~~~~~ 99 (345)
+++++|+||||+|||||||||+||++|+.||+++|||||||++|+.|||||||||+|||+++|||||||+|++||+.+|.
T Consensus 2 ~~p~~l~THsG~FHaDEvlA~~~L~~l~l~~dakIVRsRdp~~l~s~div~DVGg~yd~e~krFDHHQr~f~~tfspky~ 81 (306)
T COG4286 2 QIPMKLVTHSGSFHADEVLASAVLRLLDLFPDAKIVRSRDPQVLDSCDIVYDVGGVYDPEKKRFDHHQRSFNETFSPKYK 81 (306)
T ss_pred CCCceEEecCCcccHHHHHHHHHHHHhccCCcceeeeccChhhhhcCCEEEecCcccccccccccccccccCcccCcccc
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhhhhhcCCccCCCCCCCccccCCChhhhhccCCCC
Q 019180 100 TKLSSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLD 179 (345)
Q Consensus 100 ~~lSSAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kiy~~fi~~iDaiDNGv~~~~~~~~~~y~~~~~ls~~I~~lNP~ 179 (345)
||||||||||||||+.+|..+ ++..++++++.||+++|..||+++||+|||+..|. +.+| + .+||.+|+.|||.
T Consensus 82 ~klSSaGLI~kyfgr~~l~~~-~~~~~~~~~~~l~e~vy~~fv~~~Da~DNG~~~~~-~i~p-f---~sl~~iv~~~np~ 155 (306)
T COG4286 82 TKLSSAGLIYKYFGRDGLATY-GINRSEDDLETLYEKVYNTFVLGVDAIDNGISIYG-EIEP-F---RSLPDIVESFNPD 155 (306)
T ss_pred ccccccchHHHHhhhhHHHHh-CCccchhhHHHHHHHHHHhhhcccccccCcccccc-ccCc-c---cchHHHHHhcCCC
Confidence 999999999999999999864 56678999999999999999999999999999983 3444 3 5699999999999
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHhcCcCCCCcEEEEeccCCchhhHHHhHhhh
Q 019180 180 WTEPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMVLKRFCPWKLHLFELEEEM 259 (345)
Q Consensus 180 w~~~~~~~~~~d~~F~~A~~l~~~ef~~~v~~~~~~~lpAr~~V~~A~~~r~~~~~sg~Il~l~~~~Pwk~~l~~lE~e~ 259 (345)
|+++ +..|+.|..|++++.+.+.+.+... .+|+||.+.|++|+.++ ++-||+|+++|||++|+++||.|
T Consensus 156 ~~~e----~~~d~~F~~al~~a~~~l~~~~~~~-~~w~~a~~~v~k~I~e~-----~~~iL~ld~~~pw~~~i~eie~e- 224 (306)
T COG4286 156 WSDE----DADDEGFLEALAFASDFLDNLFKTI-VSWLRAYALVVKAIAET-----EDVILVLDRFCPWKEHIFEIEAE- 224 (306)
T ss_pred cCCC----CcchHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhh-----CCcEEEecCCCcHHHHHHHhccc-
Confidence 9875 4568899999999998887777764 58999999999999996 34499999999999999999998
Q ss_pred ccCCcEEEEEEecCCCCCeEEEEEeCCCCCCcCCCCCCcccCCCChhHhhhhhCCCCceEeecCCcccccCCHHHHHHHH
Q 019180 260 KIEPLIKYVLYEDDRGKQWRVQAVAVSPDRFESRKPLPAQWRGLRDDELSKEAGIPGCVFVHMSGFIGGNQSYGGALAMA 339 (345)
Q Consensus 260 ~~~~~i~fvi~p~~~~~~wriq~Vp~~~~sF~~R~~LPe~WrGlrdeeL~~~sGI~g~vF~H~sGFigg~kt~egAl~mA 339 (345)
++.+++||+||+ +++||+++||++.++|+.|.||||+||||++|||+++||||||+|||++||||+|+|+|+||+||
T Consensus 225 -~~~~~~Fv~fp~--~~aw~l~~Ip~~~~~fe~R~plpe~WrGL~geeL~~~sGIpGc~F~Ha~gFig~~kt~E~~lem~ 301 (306)
T COG4286 225 -IKKDFKFVVFPD--SSAWRLRGIPKDLTRFEVRVPLPEEWRGLRGEELSTVSGIPGCIFCHAGGFIGGNKTREAALEMA 301 (306)
T ss_pred -ccCceEEEEecC--CCceEEEeccCCCCceeecCCCChhhcccccchhhhhcCCCCeEEEecccceeccccHHHHHHHH
Confidence 467999999998 45899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhc
Q 019180 340 RAALK 344 (345)
Q Consensus 340 ~~al~ 344 (345)
++||+
T Consensus 302 ~lsl~ 306 (306)
T COG4286 302 RLSLK 306 (306)
T ss_pred HhhcC
Confidence 99985
No 4
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=56.30 E-value=18 Score=36.49 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=30.3
Q ss_pred cEEEecCCcccC---CCCCCCCCCCCccccccCCCccccccc
Q 019180 67 DAVLDVGGVYDP---SNDCYDHHQKGFEEVFGHGFSTKLSSA 105 (345)
Q Consensus 67 DiVvDVGgvYDp---~~~rfDHHQr~F~~t~~~~~~~~lSSA 105 (345)
=.+..|||.|.= ..++-=||-|||..-|..+.++|+.|.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (355)
T PRK11709 313 PFIWQVGGKFTYPQDKDRFEYHYPRGFDDCFTIEPDLPFKSF 354 (355)
T ss_pred ceEEecCCEecCCCCcCceeEecCCCchhhhcCCCCCCcccc
Confidence 388999999942 223445899999999998888888774
No 5
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=50.93 E-value=14 Score=25.89 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=16.1
Q ss_pred cccCCHHHHHHHHHHHhc
Q 019180 327 GGNQSYGGALAMARAALK 344 (345)
Q Consensus 327 gg~kt~egAl~mA~~al~ 344 (345)
+-.+|+|.|++||+.||+
T Consensus 26 t~G~t~eea~~~~~eal~ 43 (48)
T PF03681_consen 26 TQGDTLEEALENAKEALE 43 (48)
T ss_dssp EEESSHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHH
Confidence 567999999999999985
No 6
>COG2404 Predicted phosphohydrolase (DHH superfamily) [General function prediction only]
Probab=45.93 E-value=5.4 Score=40.07 Aligned_cols=33 Identities=24% Similarity=0.357 Sum_probs=23.0
Q ss_pred CCCCCCCCCccccc---cC-----CCccccccchhhHHHHHH
Q 019180 81 DCYDHHQKGFEEVF---GH-----GFSTKLSSAGLVYKHFGK 114 (345)
Q Consensus 81 ~rfDHHQr~F~~t~---~~-----~~~~~lSSAGLIykhfG~ 114 (345)
..|||||-+ ++|- +. -++++.|+||+||+++=+
T Consensus 86 ~wiDHH~t~-~e~~~e~~~~~v~~~~D~~rcaa~vvy~~l~~ 126 (339)
T COG2404 86 KWIDHHKTA-NETKEEVREAGVSVYVDDSRCAAGVVYEYLKP 126 (339)
T ss_pred EEecccccc-chhHHHhhhcCcEEEECCcchhhhhhhheecc
Confidence 479999977 3311 11 245788999999988655
No 7
>PHA02094 hypothetical protein
Probab=40.50 E-value=30 Score=27.32 Aligned_cols=42 Identities=21% Similarity=0.502 Sum_probs=25.7
Q ss_pred hhHHHHHHH-----HH------HHHhCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 019180 107 LVYKHFGKE-----LI------AKELNVDEGHPDVHRLFLAVYKNFMEAIDAI 148 (345)
Q Consensus 107 LIykhfG~~-----ii------~~~l~~~~~~~~~~~l~~kiy~~fi~~iDai 148 (345)
+||.|||+. +| ++.|+...--..+..-|..-|+.|+.+|-+.
T Consensus 1 miyeh~~~~sfwgs~~~~~m~~~n~l~~t~~l~~~~~k~n~~ye~~~ksig~m 53 (81)
T PHA02094 1 MIYEHFDKNSFWGSILIDGMKLNNKLSNTIMLPSTRKKLNEKYEFFAKSVGAM 53 (81)
T ss_pred CchhhcCccchhHHHHHHHHHHHHhccceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 578888876 22 2333322222334455788899999999765
No 8
>PLN02707 Soluble inorganic pyrophosphatase
Probab=35.71 E-value=71 Score=31.28 Aligned_cols=71 Identities=13% Similarity=0.162 Sum_probs=50.2
Q ss_pred CCCCeEEEEEeCCCCCC---cCCCCCCcccCCCCh--hHhhhhhCCCCceEeecCCcccccCCHHHHHHHHHHHhc
Q 019180 274 RGKQWRVQAVAVSPDRF---ESRKPLPAQWRGLRD--DELSKEAGIPGCVFVHMSGFIGGNQSYGGALAMARAALK 344 (345)
Q Consensus 274 ~~~~wriq~Vp~~~~sF---~~R~~LPe~WrGlrd--eeL~~~sGI~g~vF~H~sGFigg~kt~egAl~mA~~al~ 344 (345)
.+..|+|-|||++.-.+ .+=..||+.+.|+.+ ++.=+.-.++..--+-.-||.+++++.+.|++.-+.+.+
T Consensus 174 GE~D~KIIaV~~~Dp~~~~i~di~Dv~~~~pg~l~~I~~fF~~YK~~eGK~~n~~~~~~~~~~~~~A~~vI~e~~~ 249 (267)
T PLN02707 174 GELDWKVVAISADDPKASLVNDVDDVEKHFPGTLTAIRDWFRDYKIPDGKPANKFGLDNKPMDKDYALKVIEETNE 249 (267)
T ss_pred CCCCCEEEEEECCCCcccccCChhHhhhhhhhHHHHHHHHHHHhcCCCCCceeeccccCCcCCHHHHHHHHHHHHH
Confidence 45789999999875433 334567877777766 333344445555556667889999999999998887753
No 9
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=33.45 E-value=30 Score=32.90 Aligned_cols=38 Identities=34% Similarity=0.335 Sum_probs=28.2
Q ss_pred hhHHHHHHHhhccccCCceEE-EcCCCCC---------------------CCCccEEEecCC
Q 019180 35 DEALGCFMIRLTDKFFNAQIV-RSRDPKV---------------------LDDLDAVLDVGG 74 (345)
Q Consensus 35 DEvlA~~~L~~l~~y~~a~ii-RTRd~~~---------------------l~~cDiVvDVGg 74 (345)
||++.-+||+.++ ++++++ =++||+. +.+||+|+-.||
T Consensus 14 De~~l~~~l~~l~--~~~~~~v~s~~p~~~~~~~~v~~~~r~~~~~~~~~l~~~D~vI~gGG 73 (298)
T TIGR03609 14 DEALLAALLRELP--PGVEPTVLSNDPAETAKLYGVEAVNRRSLLAVLRALRRADVVIWGGG 73 (298)
T ss_pred hHHHHHHHHHhcC--CCCeEEEecCChHHHHhhcCceEEccCCHHHHHHHHHHCCEEEECCc
Confidence 9999999999886 455533 4666632 567999998888
No 10
>TIGR03793 TOMM_pelo TOMM propeptide domain. This model represents a domain that is conserved among a large number of putative thiazole/oxazole-modified microcins (TOMM). Oddly, most of this seqence region appears homologous to nitrile hydratase subunits. This family is expanded especially in Pelotomaculum thermopropionicum SI.
Probab=32.86 E-value=7.8 Score=30.90 Aligned_cols=12 Identities=42% Similarity=0.648 Sum_probs=11.1
Q ss_pred CCChhHhhhhhC
Q 019180 302 GLRDDELSKEAG 313 (345)
Q Consensus 302 GlrdeeL~~~sG 313 (345)
||++++|..+.|
T Consensus 65 ~lse~~L~~vag 76 (77)
T TIGR03793 65 ELTDEQLDAVAG 76 (77)
T ss_pred CCCHHHHHHhhC
Confidence 999999999987
No 11
>PF05595 DUF771: Domain of unknown function (DUF771) ; InterPro: IPR008489 This entry is represented by Bacteriophage bIL285, Orf7. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of uncharacterised ORFs found in Bacteriophage and Lactococcus lactis.
Probab=32.52 E-value=25 Score=28.48 Aligned_cols=18 Identities=28% Similarity=0.735 Sum_probs=14.8
Q ss_pred EEEEEecCCCCCeEEEEE
Q 019180 266 KYVLYEDDRGKQWRVQAV 283 (345)
Q Consensus 266 ~fvi~p~~~~~~wriq~V 283 (345)
.||.||.+.+++|++.+-
T Consensus 60 g~v~yp~~~g~~~~f~a~ 77 (91)
T PF05595_consen 60 GFVYYPKGKGSKWLFNAK 77 (91)
T ss_pred CeEEccCCCCceEEEehH
Confidence 699999866779999863
No 12
>PF00386 C1q: C1q domain; InterPro: IPR001073 This entry represents the C-terminal domain of C1q. C1q is a subunit of the C1 enzyme complex that activates the serum complement system. C1q comprises 6 A, 6 B and 6 C chains. These share the same topology, each possessing a small, globular N-terminal domain, a collagen-like Gly/Pro-rich central region, and a conserved C-terminal region, the C1q domain []. The C1q protein is produced in collagen-producing cells and shows sequence and structural similarity to collagens VIII and X [, ]. This domain is also found in multimerin and EMILIN proteins.; PDB: 1O91_C 2JG8_D 2JG9_A 2WNV_A 2WNU_A 1PK6_A 4DOU_A 1C3H_C 1C28_C 2OII_A ....
Probab=27.76 E-value=28 Score=29.00 Aligned_cols=22 Identities=23% Similarity=0.607 Sum_probs=17.2
Q ss_pred EEEecCCcccCCCCCCCCCCCC
Q 019180 68 AVLDVGGVYDPSNDCYDHHQKG 89 (345)
Q Consensus 68 iVvDVGgvYDp~~~rfDHHQr~ 89 (345)
+++|+|+.|||++++|-=...|
T Consensus 24 v~~N~g~~yn~~tG~Ftap~~G 45 (127)
T PF00386_consen 24 VLTNIGNAYNPSTGIFTAPVPG 45 (127)
T ss_dssp EEEETTS-EETTTTEEE-SS-E
T ss_pred EEEcCCCccEeecCEEecCCCC
Confidence 8899999999999999877766
No 13
>PRK15008 HTH-type transcriptional regulator RutR; Provisional
Probab=27.22 E-value=51 Score=29.71 Aligned_cols=35 Identities=9% Similarity=0.097 Sum_probs=22.4
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhhhhh
Q 019180 104 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAID 149 (345)
Q Consensus 104 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kiy~~fi~~iDaiD 149 (345)
|.|.||.|||-. ++.+..+.+.+...+.+.+++..
T Consensus 51 s~gtiY~hF~sK-----------e~L~~a~~~~~~~~~~~~~~~~~ 85 (212)
T PRK15008 51 SKTNLLYYFPSK-----------EALYIAVLRQILDIWLAPLKAFR 85 (212)
T ss_pred CHHHHHHHCCCH-----------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 678999999865 22344555666666666666553
No 14
>PF04542 Sigma70_r2: Sigma-70 region 2 ; InterPro: IPR007627 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 2 of sigma-70 is the most conserved region of the entire protein. All members of this class of sigma-factor contain region 2. The high conservation is due to region 2 containing both the -10 promoter recognition helix and the primary core RNA polymerase binding determinant. The core-binding helix, interacts with the clamp domain of the largest polymerase subunit, beta prime [, ]. The aromatic residues of the recognition helix, found at the C terminus of this domain are thought to mediate strand separation, thereby allowing transcription initiation [, ].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1OR7_B 1H3L_B 2Z2S_C 2Q1Z_C 2O7G_B 1SMY_F 1IW7_P 2BE5_F 2A6E_F 2CW0_F ....
Probab=25.79 E-value=2.5e+02 Score=19.96 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhhhhhc
Q 019180 109 YKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDN 150 (345)
Q Consensus 109 ykhfG~~ii~~~l~~~~~~~~~~~l~~kiy~~fi~~iDaiDN 150 (345)
|.+|...+.+-....-.+..+.+.+++..+-.+.+.++..|.
T Consensus 2 ~~~~~~~l~~~~~~~~~~~~~~eD~~qe~~~~l~~~~~~~~~ 43 (71)
T PF04542_consen 2 YERYYPLLYRYARRYTGDPEDAEDLVQEAFIKLWRAIDSYDP 43 (71)
T ss_dssp HHHTHHHHHHHHHTCTTCSSHHHHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHhCCHhhHHHHhhHHHHHHHhhhhcccc
Confidence 556666655544444445678999999999999999987763
No 15
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=24.90 E-value=65 Score=33.26 Aligned_cols=12 Identities=50% Similarity=0.974 Sum_probs=10.6
Q ss_pred CCCccEEEecCC
Q 019180 63 LDDLDAVLDVGG 74 (345)
Q Consensus 63 l~~cDiVvDVGg 74 (345)
|.+||+|++.||
T Consensus 115 l~~aDlvI~gGG 126 (426)
T PRK10017 115 LSGYDAIIQVGG 126 (426)
T ss_pred HHhCCEEEECCC
Confidence 677899999999
No 16
>PF04369 Lactococcin: Lactococcin-like family; InterPro: IPR007464 Bacteriocins are produced by bacteria to inhibit the growth of similar or closely related bacterial strains. The class II bacteriocins are small heat-stable proteins for which disulphide bonds are the only modification to the peptide. Lactococcin A and B are class-IId bacteriocins (one-peptide non-pediocin-like bacteriocin) [, ].; GO: 0042742 defense response to bacterium, 0005576 extracellular region
Probab=23.73 E-value=60 Score=24.95 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=18.3
Q ss_pred cCCCChhHhhhhhCCCCceEeecCCcc
Q 019180 300 WRGLRDDELSKEAGIPGCVFVHMSGFI 326 (345)
Q Consensus 300 WrGlrdeeL~~~sGI~g~vF~H~sGFi 326 (345)
..=|+||||+++.| -+--|+-+.|+-
T Consensus 7 f~~~sdeeL~~i~G-G~l~~iqs~g~g 32 (60)
T PF04369_consen 7 FNILSDEELSKING-GGLPYIQSNGPG 32 (60)
T ss_pred ceecCHHHHhhccC-CcceeeeecCcc
Confidence 34589999999987 445666666543
No 17
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=23.47 E-value=2.5e+02 Score=23.73 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=23.2
Q ss_pred cccHHHHHHHHHHhcCc-CCCCcEEEEecc-CCchhh
Q 019180 217 LPARSIVVECIAERYDY-DPSGEIMVLKRF-CPWKLH 251 (345)
Q Consensus 217 lpAr~~V~~A~~~r~~~-~~sg~Il~l~~~-~Pwk~~ 251 (345)
+.+-+-|..+++.++.| |.|+++|++.++ +=|...
T Consensus 59 v~~~R~vSn~IAe~~~V~HeSPQ~ili~~g~~v~~aS 95 (105)
T PF11009_consen 59 VIEYRPVSNAIAEDFGVKHESPQVILIKNGKVVWHAS 95 (105)
T ss_dssp GGGGHHHHHHHHHHHT----SSEEEEEETTEEEEEEE
T ss_pred EEeCchhHHHHHHHhCCCcCCCcEEEEECCEEEEECc
Confidence 33444567788889987 999999999885 457543
No 18
>smart00110 C1Q Complement component C1q domain. Globular domain found in many collagens and eponymously in complement C1q. When part of full length proteins these domains form a 'bouquet' due to the multimerization of heterotrimers. The C1q fold is similar to that of tumour necrosis factor.
Probab=22.76 E-value=44 Score=28.92 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.6
Q ss_pred EEEecCCcccCCCCCCCCCCCC
Q 019180 68 AVLDVGGVYDPSNDCYDHHQKG 89 (345)
Q Consensus 68 iVvDVGgvYDp~~~rfDHHQr~ 89 (345)
+.+++|+.|||.+++|.=-..|
T Consensus 30 v~~N~g~~yd~~TG~Ftcpv~G 51 (135)
T smart00110 30 VLYNQQGHYDPRTGKFTCPVPG 51 (135)
T ss_pred EEECCCCCccCCCCEEECeece
Confidence 6789999999999999887776
No 19
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=22.65 E-value=1.1e+02 Score=32.35 Aligned_cols=30 Identities=3% Similarity=-0.194 Sum_probs=20.4
Q ss_pred CCCCceEeecCCcccccCCHHHHHHHHHHH
Q 019180 313 GIPGCVFVHMSGFIGGNQSYGGALAMARAA 342 (345)
Q Consensus 313 GI~g~vF~H~sGFigg~kt~egAl~mA~~a 342 (345)
++.+.---.++||.-...+.+.-++.....
T Consensus 389 l~~~GGH~~AaG~~i~~~~~~~f~~~l~~~ 418 (539)
T TIGR00644 389 FLKFGGHAMAAGLTLKRENLEEFREKLEEK 418 (539)
T ss_pred ccccCChHHcCeeEEcHHHHHHHHHHHHHH
Confidence 466666667888888888777766655443
No 20
>PRK14538 putative bifunctional signaling protein/50S ribosomal protein L9; Provisional
Probab=22.52 E-value=1.2e+03 Score=26.62 Aligned_cols=62 Identities=5% Similarity=0.010 Sum_probs=44.4
Q ss_pred cEEEEEEecCCCCCeEEEEEeCCCCCCcCCCCCCcccCCCChhHhhhhhCCCCceEeecCCcccccCCHHHHHHHHHHHh
Q 019180 264 LIKYVLYEDDRGKQWRVQAVAVSPDRFESRKPLPAQWRGLRDDELSKEAGIPGCVFVHMSGFIGGNQSYGGALAMARAAL 343 (345)
Q Consensus 264 ~i~fvi~p~~~~~~wriq~Vp~~~~sF~~R~~LPe~WrGlrdeeL~~~sGI~g~vF~H~sGFigg~kt~egAl~mA~~al 343 (345)
++.||+... .++.|+|.+=+. + .+.=..+.+..| |+---.++|+.-...|.|.|++....+|
T Consensus 617 ~asfV~~e~-~d~~i~ISaRS~--g-------------~inVq~Iae~~G--GGGH~~AAGaqi~~~tlee~~~~L~~~I 678 (838)
T PRK14538 617 DAAFMIAKI-SDNTIAISARSY--N-------------EINVQTIMEQME--GGGHLNSAATQIKGTNIKTVTQTLKHLL 678 (838)
T ss_pred eEEEEEEEE-cCCEEEEEEEeC--C-------------CCCHHHHHHHhC--CCccHhhheEEeCCCCHHHHHHHHHHHH
Confidence 578888875 355689886331 1 122356677766 7777788888888889999999888776
No 21
>PF10949 DUF2777: Protein of unknown function (DUF2777); InterPro: IPR024488 This family of proteins with unknown function appears to be restricted to Bacillaceae.
Probab=22.43 E-value=26 Score=32.55 Aligned_cols=53 Identities=21% Similarity=0.350 Sum_probs=31.3
Q ss_pred EEeCCC-CCCcCCCCCCcccCCCC----hhHhhhhh--------CCCCceEeecCC-cccccCCHHH
Q 019180 282 AVAVSP-DRFESRKPLPAQWRGLR----DDELSKEA--------GIPGCVFVHMSG-FIGGNQSYGG 334 (345)
Q Consensus 282 ~Vp~~~-~sF~~R~~LPe~WrGlr----deeL~~~s--------GI~g~vF~H~sG-Figg~kt~eg 334 (345)
.+|++. .+---||+|+.+|-=|. |+.|-... .+-||||||++. |....++++|
T Consensus 74 ~~~L~~ge~IRi~K~l~~~y~~lL~eL~d~~f~~F~~~Ln~~gfS~yDciyCyN~LlF~~~~~~~~G 140 (185)
T PF10949_consen 74 QIPLSNGESIRIRKKLFDPYEILLNELDDEAFLHFEQTLNSLGFSHYDCIYCYNSLLFLNSEESFKG 140 (185)
T ss_pred EEecCCCCEEEEeeccccHHHHHHHhcCHHHHHHHHHHHHHcCCceEEEEeEccchhccCCcCccCc
Confidence 345443 34566778876654433 34432221 577999999987 5555555544
No 22
>PF05914 RIB43A: RIB43A; InterPro: IPR008805 This family consists of several RIB43A-like eukaryotic proteins. Ciliary and flagellar microtubules contain a specialised set of protofilaments, termed ribbons, that are composed of tubulin and several associated proteins. RIB43A was first characterised in the unicellular biflagellate, Chlamydomonas reinhardtii although highly related sequences are present in several higher eukaryotes including humans. The function of this protein is unknown although the structure of RIB43A and its association with the specialised protofilament ribbons and with basal bodies is relevant to the proposed role of ribbons in forming and stabilising doublet and triplet microtubules and in organising their three-dimensional structure. Human RIB43A homologues could represent a structural requirement in centriole replication in dividing cells [].
Probab=20.06 E-value=76 Score=32.46 Aligned_cols=26 Identities=19% Similarity=0.663 Sum_probs=22.5
Q ss_pred CCCCcCCCCCCcccCCCChhHhhhhh
Q 019180 287 PDRFESRKPLPAQWRGLRDDELSKEA 312 (345)
Q Consensus 287 ~~sF~~R~~LPe~WrGlrdeeL~~~s 312 (345)
.++|.+...+|..|.|++.|+|..+-
T Consensus 261 ~s~~gp~Rv~~d~wKGMs~eQl~~i~ 286 (379)
T PF05914_consen 261 QSSFGPHRVIPDRWKGMSPEQLEEIR 286 (379)
T ss_pred cccCCCCCCCCcccCCCCHHHHHHHH
Confidence 46788888999999999999998763
No 23
>PF06449 DUF1082: Mitochondrial domain of unknown function (DUF1082); InterPro: IPR009455 The domain is found exclusively in plant mitochonchria and is a putative homing endonuclease, though such a function remains to be demonstrated. The domain is found C-terminal to the plant mitochondrial ATPase subunit 8 domain IPR003319 from INTERPRO.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0005739 mitochondrion, 0016021 integral to membrane
Probab=20.03 E-value=1.2e+02 Score=22.39 Aligned_cols=24 Identities=17% Similarity=0.409 Sum_probs=17.6
Q ss_pred hccCCcEEEEEEecC----CCCCeEEEE
Q 019180 259 MKIEPLIKYVLYEDD----RGKQWRVQA 282 (345)
Q Consensus 259 ~~~~~~i~fvi~p~~----~~~~wriq~ 282 (345)
-+.+.+|+|.|...+ .+.+|+|.|
T Consensus 22 rgmErnI~YlIskssyst~s~~gw~itc 49 (51)
T PF06449_consen 22 RGMERNILYLISKSSYSTSSNPGWGITC 49 (51)
T ss_pred cccccceEEEEeeccccccCCCCcceEe
Confidence 466789999997652 236899987
Done!