Query 019180
Match_columns 345
No_of_seqs 118 out of 351
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 12:08:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019180.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019180hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ox7_P MH027; urokinase-type p 42.1 6.2 0.00021 23.3 0.3 13 298-310 8-20 (23)
2 4f3j_A Complement C1Q tumor ne 35.3 11 0.00036 31.5 0.8 22 68-89 27-48 (148)
3 2wjn_C Photosynthetic reaction 34.6 17 0.0006 35.1 2.2 32 300-331 62-101 (336)
4 2yzt_A Putative uncharacterize 32.7 20 0.00069 26.1 1.9 19 326-344 27-45 (67)
5 2wnv_C C1Q chain C, complement 26.7 18 0.00063 29.6 0.8 23 67-89 28-50 (131)
6 3kwr_A Putative RNA-binding pr 26.1 26 0.0009 27.8 1.6 18 327-344 34-51 (97)
7 2wnv_A C1Q chain A, complement 25.1 21 0.00071 29.3 0.8 23 67-89 24-46 (134)
8 3loc_A HTH-type transcriptiona 25.0 32 0.0011 28.0 2.0 34 104-148 51-84 (212)
9 2wnv_B C1Q chain B, complement 24.6 21 0.00073 29.4 0.8 23 67-89 27-49 (136)
10 2dsy_A Hypothetical protein TT 22.6 46 0.0016 25.4 2.4 18 327-344 41-58 (87)
11 1pb6_A Hypothetical transcript 21.9 33 0.0011 28.0 1.5 34 104-148 51-84 (212)
12 3on4_A Transcriptional regulat 20.5 44 0.0015 26.6 2.0 34 104-148 43-76 (191)
No 1
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=42.15 E-value=6.2 Score=23.30 Aligned_cols=13 Identities=31% Similarity=0.897 Sum_probs=9.5
Q ss_pred cccCCCChhHhhh
Q 019180 298 AQWRGLRDDELSK 310 (345)
Q Consensus 298 e~WrGlrdeeL~~ 310 (345)
-+||||.+-.+..
T Consensus 8 cswrglenhamcg 20 (23)
T 3ox7_P 8 CSWRGLENHAMCG 20 (26)
T ss_pred cccccchhhcccc
Confidence 4799998876543
No 2
>4f3j_A Complement C1Q tumor necrosis factor-related PROT; late-onset retinal macular degeneration, L-ORMD, L-ORD, AMD, related macular degeneration; 1.34A {Homo sapiens}
Probab=35.27 E-value=11 Score=31.51 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=18.4
Q ss_pred EEEecCCcccCCCCCCCCCCCC
Q 019180 68 AVLDVGGVYDPSNDCYDHHQKG 89 (345)
Q Consensus 68 iVvDVGgvYDp~~~rfDHHQr~ 89 (345)
+++|+|+-||+++++|==--.|
T Consensus 27 v~~N~G~~yn~sTG~FTaPv~G 48 (148)
T 4f3j_A 27 VLVNEQGHYDAVTGKFTCQVPG 48 (148)
T ss_dssp EEECTTCCEETTTTEEECCSCE
T ss_pred EEECCCCCccCCCCeEECCcce
Confidence 8899999999999988655544
No 3
>2wjn_C Photosynthetic reaction center cytochrome C subun; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_C* 1r2c_C* 1dxr_C* 2prc_C* 2i5n_C* 2wjm_C* 2x5u_C* 2x5v_C* 3d38_C* 3g7f_C* 3prc_C* 4ac5_C* 5prc_C* 6prc_C* 7prc_C* 3t6e_C* 2jbl_C* 1vrn_C* 3t6d_C*
Probab=34.57 E-value=17 Score=35.06 Aligned_cols=32 Identities=16% Similarity=0.361 Sum_probs=24.6
Q ss_pred cCCCChhHhhh--------hhCCCCceEeecCCcccccCC
Q 019180 300 WRGLRDDELSK--------EAGIPGCVFVHMSGFIGGNQS 331 (345)
Q Consensus 300 WrGlrdeeL~~--------~sGI~g~vF~H~sGFigg~kt 331 (345)
..+|+.+|+.+ ++.-.||.|||+++=.+...-
T Consensus 62 L~dls~~ef~rlM~amt~Wvs~~~gCtyCHn~~~Faddd~ 101 (336)
T 2wjn_C 62 LGNLTEAEFLRTMTAITEWVSPQEGCTYCHDENNLASEAK 101 (336)
T ss_dssp STTSBHHHHHHHHHHHHHHHCTTTGGGGTSBTTBTTCCCS
T ss_pred hcCCCHHHHHHHHHHHHHHhCCCCCcccccCcccccccch
Confidence 37899998877 555689999999986665543
No 4
>2yzt_A Putative uncharacterized protein TTHA1756; uncharacterized conserved protein, structural genomics, UNKN function, NPPSFA; 1.80A {Thermus thermophilus}
Probab=32.73 E-value=20 Score=26.06 Aligned_cols=19 Identities=21% Similarity=0.167 Sum_probs=16.5
Q ss_pred ccccCCHHHHHHHHHHHhc
Q 019180 326 IGGNQSYGGALAMARAALK 344 (345)
Q Consensus 326 igg~kt~egAl~mA~~al~ 344 (345)
+.-.+|.|.|++||+.||+
T Consensus 27 ~t~G~T~eEa~~~~~eAi~ 45 (67)
T 2yzt_A 27 HTQAQSFEELLRRLQEAIA 45 (67)
T ss_dssp EEEESSHHHHHHHHHHHHH
T ss_pred ceeeCCHHHHHHHHHHHHH
Confidence 4667999999999999985
No 5
>2wnv_C C1Q chain C, complement C1Q subcomponent subunit C; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_C 2wnu_C* 2jg9_C* 1pk6_C
Probab=26.69 E-value=18 Score=29.55 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=19.8
Q ss_pred cEEEecCCcccCCCCCCCCCCCC
Q 019180 67 DAVLDVGGVYDPSNDCYDHHQKG 89 (345)
Q Consensus 67 DiVvDVGgvYDp~~~rfDHHQr~ 89 (345)
.+++++|+.|||.+++|==...|
T Consensus 28 ~v~~N~G~~yn~~TG~Ftap~~G 50 (131)
T 2wnv_C 28 AVLTNPQGDYDTSTGKFTCKVPG 50 (131)
T ss_dssp EEEECTTCCEETTTTEEECSSCE
T ss_pred eEEECCCCCccCCCCEEEcccCC
Confidence 38899999999999998777655
No 6
>3kwr_A Putative RNA-binding protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS binding protein; HET: GOL; 1.45A {Lactobacillus plantarum}
Probab=26.12 E-value=26 Score=27.83 Aligned_cols=18 Identities=28% Similarity=-0.055 Sum_probs=16.0
Q ss_pred cccCCHHHHHHHHHHHhc
Q 019180 327 GGNQSYGGALAMARAALK 344 (345)
Q Consensus 327 gg~kt~egAl~mA~~al~ 344 (345)
...+|+|.|++||+.||+
T Consensus 34 T~GdT~eEAl~nA~EAL~ 51 (97)
T 3kwr_A 34 TFGASVQVAADNAANALA 51 (97)
T ss_dssp EEESSHHHHHHHHHHHHH
T ss_pred EecCCHHHHHHHHHHHHH
Confidence 467999999999999985
No 7
>2wnv_A C1Q chain A, complement C1Q subcomponent subunit A; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_A 2wnu_A* 2jg9_A* 1pk6_A
Probab=25.13 E-value=21 Score=29.30 Aligned_cols=23 Identities=9% Similarity=0.157 Sum_probs=19.7
Q ss_pred cEEEecCCcccCCCCCCCCCCCC
Q 019180 67 DAVLDVGGVYDPSNDCYDHHQKG 89 (345)
Q Consensus 67 DiVvDVGgvYDp~~~rfDHHQr~ 89 (345)
.+++++|+-|||.+++|==...|
T Consensus 24 ~v~~N~G~~yn~~TG~Ftap~~G 46 (134)
T 2wnv_A 24 TVITNQEEPYQNHSGRFVCTVPG 46 (134)
T ss_dssp EEEEEETSCEETTTTEEECCSCE
T ss_pred EEEECCCCCccCCCCEEECeeCC
Confidence 38899999999999998776655
No 8
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=25.02 E-value=32 Score=28.01 Aligned_cols=34 Identities=9% Similarity=0.103 Sum_probs=20.8
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 019180 104 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAI 148 (345)
Q Consensus 104 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kiy~~fi~~iDai 148 (345)
|-|.||+||+.. ++.+..++..+.+.+...++++
T Consensus 51 s~~tlY~~F~sK-----------e~L~~~~~~~~~~~~~~~~~~~ 84 (212)
T 3loc_A 51 SKTNLLYYFPSK-----------EALYIAVLRQILDIWLAPLKAF 84 (212)
T ss_dssp CHHHHHHHSSSH-----------HHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHhhhCCCH-----------HHHHHHHHHHHHHHHHHHHHHh
Confidence 568899999854 1223455555566666666554
No 9
>2wnv_B C1Q chain B, complement C1Q subcomponent subunit B; immune system, secreted, collagen, recognition, disulfide bond, innate immunity; HET: NAG; 1.25A {Homo sapiens} PDB: 2jg8_B 2wnu_B* 2jg9_B* 1pk6_B
Probab=24.55 E-value=21 Score=29.37 Aligned_cols=23 Identities=13% Similarity=0.432 Sum_probs=19.6
Q ss_pred cEEEecCCcccCCCCCCCCCCCC
Q 019180 67 DAVLDVGGVYDPSNDCYDHHQKG 89 (345)
Q Consensus 67 DiVvDVGgvYDp~~~rfDHHQr~ 89 (345)
.+++++|+-|||.+++|==...|
T Consensus 27 ~v~~N~G~~yn~~TG~Ftap~~G 49 (136)
T 2wnv_B 27 HVITNMNNNYEPRSGKFTCKVPG 49 (136)
T ss_dssp EEEEEETSCEETTTTEEECSSCE
T ss_pred eEEECCCCcccCCCCEEECCcCe
Confidence 38899999999999998776655
No 10
>2dsy_A Hypothetical protein TTHA0281; structural genomics, thermus thermophilus HB8, NPPSFA; HET: NHE; 1.90A {Thermus thermophilus} SCOP: d.304.1.2
Probab=22.59 E-value=46 Score=25.45 Aligned_cols=18 Identities=28% Similarity=0.184 Sum_probs=15.6
Q ss_pred cccCCHHHHHHHHHHHhc
Q 019180 327 GGNQSYGGALAMARAALK 344 (345)
Q Consensus 327 gg~kt~egAl~mA~~al~ 344 (345)
...+|.|.|+++|+.||+
T Consensus 41 t~G~T~eEA~~~a~eAl~ 58 (87)
T 2dsy_A 41 ATGKSLKECEANLQAALE 58 (87)
T ss_dssp EEESSHHHHHHHHHHHHH
T ss_pred EeeCCHHHHHHHHHHHHH
Confidence 447999999999999985
No 11
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=21.92 E-value=33 Score=28.01 Aligned_cols=34 Identities=9% Similarity=0.103 Sum_probs=20.6
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 019180 104 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAI 148 (345)
Q Consensus 104 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kiy~~fi~~iDai 148 (345)
|-|.+|+||+.. ++.+..++......+.+.++..
T Consensus 51 s~~t~Y~~F~sK-----------~~L~~~~~~~~~~~~~~~~~~~ 84 (212)
T 1pb6_A 51 SKTNLLYYFPSK-----------EALYIAVLRQILDIWLAPLKAF 84 (212)
T ss_dssp CHHHHHHHSSSH-----------HHHHHHHHHHHHHHHTHHHHHC
T ss_pred ChhHHHHhCCCH-----------HHHHHHHHHHHHHHHHHHHHHh
Confidence 678899999765 1234455555555555555543
No 12
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=20.46 E-value=44 Score=26.61 Aligned_cols=34 Identities=9% Similarity=0.025 Sum_probs=22.8
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 019180 104 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAI 148 (345)
Q Consensus 104 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kiy~~fi~~iDai 148 (345)
|-|.+|+||+-. ++.+..++..+...+.+.++..
T Consensus 43 s~~t~Y~~F~sK-----------~~L~~~~~~~~~~~~~~~~~~~ 76 (191)
T 3on4_A 43 KTASIHYHFPSK-----------EDLGVAVISWHTDKIAAVLSDI 76 (191)
T ss_dssp CHHHHHHHCSSH-----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhcCCCH-----------HHHHHHHHHHHHHHHHHHHHhh
Confidence 578999999865 2334556666666676666655
Done!