Query 019180
Match_columns 345
No_of_seqs 118 out of 351
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 12:08:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019180.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019180hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fd5a1 a.4.1.9 (A:1-76) Proba 63.3 1.1 8.3E-05 31.3 1.2 37 104-151 40-76 (76)
2 d1pb6a1 a.4.1.9 (A:14-85) Hypo 62.6 1.2 8.4E-05 31.2 1.1 35 104-149 37-71 (72)
3 d2np5a1 a.4.1.9 (A:9-77) Trans 48.8 3.2 0.00024 28.2 1.5 35 104-149 34-68 (69)
4 d1pk6c_ b.22.1.1 (C:) Compleme 48.4 2.4 0.00017 32.5 0.8 23 67-89 26-48 (129)
5 d2g7sa1 a.4.1.9 (A:3-76) Putat 45.0 3.3 0.00024 28.7 1.1 36 104-150 37-72 (74)
6 d2oi8a1 a.4.1.9 (A:8-86) Putat 41.7 4 0.00029 28.5 1.1 33 104-147 42-74 (79)
7 d1pk6b_ b.22.1.1 (B:) Compleme 41.6 3.5 0.00026 31.3 0.8 23 67-89 26-48 (132)
8 d1pk6a_ b.22.1.1 (A:) Compleme 41.0 3.6 0.00026 31.1 0.8 22 68-89 25-46 (133)
9 d1o91a_ b.22.1.1 (A:) Collagen 39.1 4 0.00029 31.1 0.8 23 67-89 24-46 (131)
10 d1vi0a1 a.4.1.9 (A:6-77) Hypot 34.0 8.2 0.0006 26.2 1.7 33 104-147 34-66 (72)
11 d1gr3a_ b.22.1.1 (A:) Collagen 33.8 5.5 0.0004 30.2 0.8 22 68-89 26-47 (132)
12 d1v7ba1 a.4.1.9 (A:1-74) Trans 32.1 9.8 0.00071 26.0 1.9 35 104-149 37-71 (74)
13 d2id6a1 a.4.1.9 (A:1-75) Trans 30.9 14 0.001 25.2 2.6 12 104-115 36-47 (75)
14 d1c3ha_ b.22.1.1 (A:) 30 kDa a 30.6 6.7 0.00049 30.2 0.8 22 68-89 28-49 (137)
15 d1t33a1 a.4.1.9 (A:1-88) Putat 29.1 13 0.00095 26.2 2.2 12 104-115 44-55 (88)
16 d2o7ta1 a.4.1.9 (A:1-78) Trans 28.3 8.7 0.00063 26.7 1.0 32 104-146 40-71 (78)
17 d2gfna1 a.4.1.9 (A:4-80) Proba 26.3 15 0.0011 25.2 2.0 34 104-148 39-72 (77)
18 d1wpna_ c.107.1.1 (A:) Mangane 25.8 28 0.002 27.4 3.9 52 82-138 93-146 (187)
19 d2fbqa1 a.4.1.9 (A:2-80) Trans 25.4 15 0.0011 25.2 1.9 33 104-147 37-69 (79)
20 d1sgma1 a.4.1.9 (A:5-77) Putat 24.1 28 0.0021 23.3 3.2 14 104-117 35-50 (73)
21 d2d6ya1 a.4.1.9 (A:7-74) Putat 23.3 18 0.0013 24.3 1.9 12 104-115 35-46 (68)
22 d2hyja1 a.4.1.9 (A:8-82) Putat 22.6 11 0.0008 25.8 0.6 31 104-145 38-68 (75)
23 d1h3la_ a.177.1.1 (A:) Sigma f 21.9 62 0.0045 21.5 4.7 42 188-229 3-44 (75)
24 d1t56a1 a.4.1.9 (A:22-94) Ethr 21.0 20 0.0014 24.1 1.7 12 104-115 36-47 (73)
No 1
>d2fd5a1 a.4.1.9 (A:1-76) Probable transcriptional regulator PA3133 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=63.27 E-value=1.1 Score=31.28 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=27.7
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhhhhhcC
Q 019180 104 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNG 151 (345)
Q Consensus 104 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kiy~~fi~~iDaiDNG 151 (345)
|-|.+|+||+.. ++.+..+++.++..+.+.++.+|.|
T Consensus 40 s~~t~Y~~F~~K-----------e~L~~~~~~~~~~~~~~~l~~~~pG 76 (76)
T d2fd5a1 40 TVGGFYAHFQSK-----------DALMLEAFEQLLGKRRELLGELDPG 76 (76)
T ss_dssp CGGGGGGTCSCH-----------HHHHHHHHHHHHHHHHHHHHTSCTT
T ss_pred CccchhhcCCCH-----------HHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 458889998754 2345667788888888888888776
No 2
>d1pb6a1 a.4.1.9 (A:14-85) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=62.64 E-value=1.2 Score=31.17 Aligned_cols=35 Identities=9% Similarity=0.097 Sum_probs=26.0
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhhhhh
Q 019180 104 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAID 149 (345)
Q Consensus 104 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kiy~~fi~~iDaiD 149 (345)
|-|.+|+||+.. ++.+..++....+.+++.+.+++
T Consensus 37 s~~t~y~~F~~K-----------~~l~~~~~~~~~~~~~~~l~a~~ 71 (72)
T d1pb6a1 37 SKTNLLYYFPSK-----------EALYIAVLRQILDIWLAPLKAFR 71 (72)
T ss_dssp CHHHHHHHSSSH-----------HHHHHHHHHHHHHHHTHHHHHCC
T ss_pred ChHHHHHHCcCH-----------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 678999999754 23456777888888888887764
No 3
>d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=48.84 E-value=3.2 Score=28.18 Aligned_cols=35 Identities=14% Similarity=0.300 Sum_probs=24.9
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhhhhh
Q 019180 104 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAID 149 (345)
Q Consensus 104 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kiy~~fi~~iDaiD 149 (345)
|-|.||+||+.. ++.+..++......+.+.++.++
T Consensus 34 s~~~iy~~F~sK-----------~~L~~~~~~~~~~~~~~~~~~~~ 68 (69)
T d2np5a1 34 SIGAVQHHFSTK-----------DEMFAFALRTLVDKLLARLSEVE 68 (69)
T ss_dssp CHHHHHHHCSSH-----------HHHHHHHHHHHHHHHHHHHHTSC
T ss_pred CHHHHHHHCcCH-----------HHHHHHHHHHHHHHHHHHHHHcc
Confidence 557899999754 23456677778888888887654
No 4
>d1pk6c_ b.22.1.1 (C:) Complement c1q globular head, C chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.42 E-value=2.4 Score=32.47 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=19.5
Q ss_pred cEEEecCCcccCCCCCCCCCCCC
Q 019180 67 DAVLDVGGVYDPSNDCYDHHQKG 89 (345)
Q Consensus 67 DiVvDVGgvYDp~~~rfDHHQr~ 89 (345)
.+++|+|+.||++++||==...|
T Consensus 26 ~~~~N~G~~yd~stg~FTaPv~G 48 (129)
T d1pk6c_ 26 AVLTNPQGDYDTSTGKFTCKVPG 48 (129)
T ss_dssp EEEECTTCCEETTTTEEECSSCE
T ss_pred eEEECCCCCccCCCCEEECCcCC
Confidence 37899999999999998766655
No 5
>d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=45.05 E-value=3.3 Score=28.66 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=24.9
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhhhhhc
Q 019180 104 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDN 150 (345)
Q Consensus 104 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kiy~~fi~~iDaiDN 150 (345)
|-|.+|+||+.. ++.+..+...+.+.+.+.+..+++
T Consensus 37 s~~~iY~~F~sK-----------~~L~~~~~~~~~~~~~~~~~~i~~ 72 (74)
T d2g7sa1 37 RNASIHHHFPSK-----------SDLVCKLVSQYRQEAEAGIAELEK 72 (74)
T ss_dssp CHHHHHHHCSSH-----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHCcCH-----------HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567899999855 233455667777777777777665
No 6
>d2oi8a1 a.4.1.9 (A:8-86) Putative regulatory protein Sco4313 {Streptomyces coelicolor [TaxId: 1902]}
Probab=41.69 E-value=4 Score=28.49 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=22.8
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhhh
Q 019180 104 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDA 147 (345)
Q Consensus 104 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kiy~~fi~~iDa 147 (345)
|-|.+|+||+.. ++.+..++..+++.|.+.+++
T Consensus 42 s~~~~Y~~F~~k-----------~~L~~~~~~~~~~~~~~~~~~ 74 (79)
T d2oi8a1 42 SGPALYRYFDGR-----------DELITELIRDAYRSQADSLRA 74 (79)
T ss_dssp CHHHHHTTCSSH-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhhhcCCH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 567889888755 234566777788888777753
No 7
>d1pk6b_ b.22.1.1 (B:) Complement c1q globular head, B chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.58 E-value=3.5 Score=31.27 Aligned_cols=23 Identities=13% Similarity=0.432 Sum_probs=19.2
Q ss_pred cEEEecCCcccCCCCCCCCCCCC
Q 019180 67 DAVLDVGGVYDPSNDCYDHHQKG 89 (345)
Q Consensus 67 DiVvDVGgvYDp~~~rfDHHQr~ 89 (345)
.+++|+|+.||++++||-=.-.|
T Consensus 26 ~~~~n~g~~ydtstg~FTaPv~G 48 (132)
T d1pk6b_ 26 HVITNMNNNYEPRSGKFTCKVPG 48 (132)
T ss_dssp EEEEEETSCEETTTTEEECSSCE
T ss_pred EEEECCCCcccCCCCeEEcccCc
Confidence 48999999999999998765544
No 8
>d1pk6a_ b.22.1.1 (A:) Complement c1q globular head, A chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.01 E-value=3.6 Score=31.12 Aligned_cols=22 Identities=9% Similarity=0.164 Sum_probs=18.3
Q ss_pred EEEecCCcccCCCCCCCCCCCC
Q 019180 68 AVLDVGGVYDPSNDCYDHHQKG 89 (345)
Q Consensus 68 iVvDVGgvYDp~~~rfDHHQr~ 89 (345)
+++|+|+-||++++||-=--.|
T Consensus 25 ~~~n~g~~yntStg~FTaPv~G 46 (133)
T d1pk6a_ 25 VITNQEEPYQNHSGRFVCTVPG 46 (133)
T ss_dssp EEEEETCCEETTTTEEECCSCE
T ss_pred EEECCCCCCcCCCCEEEeeEcc
Confidence 7899999999999998755444
No 9
>d1o91a_ b.22.1.1 (A:) Collagen NC1 trimerisation domain {Mouse (Mus musculus), isoform VIII [TaxId: 10090]}
Probab=39.10 E-value=4 Score=31.14 Aligned_cols=23 Identities=13% Similarity=0.317 Sum_probs=19.6
Q ss_pred cEEEecCCcccCCCCCCCCCCCC
Q 019180 67 DAVLDVGGVYDPSNDCYDHHQKG 89 (345)
Q Consensus 67 DiVvDVGgvYDp~~~rfDHHQr~ 89 (345)
.+.+|+|+-||++++||-=-..|
T Consensus 24 ~~~~N~g~~yntstg~FTaPvaG 46 (131)
T d1o91a_ 24 KLLYNGRQNYNPQTGIFTCEVPG 46 (131)
T ss_dssp EEEEEETTCEETTTTEEECCSCE
T ss_pred eEEECCCCCeeCCCCEEEcccce
Confidence 37899999999999999766655
No 10
>d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator YsiA {Bacillus subtilis [TaxId: 1423]}
Probab=34.02 E-value=8.2 Score=26.18 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=22.3
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhhh
Q 019180 104 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDA 147 (345)
Q Consensus 104 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kiy~~fi~~iDa 147 (345)
|-|.+|+||+.. ++.+..++...+..+.+.++.
T Consensus 34 s~~~~y~~F~~K-----------~~L~~~~~~~~~~~~~~~~~~ 66 (72)
T d1vi0a1 34 ADGTIYLYFKNK-----------EDILISLFKEKMGQFIERMEE 66 (72)
T ss_dssp CHHHHHHHCSSH-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHCcCH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 568899999864 233466667777777777643
No 11
>d1gr3a_ b.22.1.1 (A:) Collagen NC1 trimerisation domain {Human (Homo sapiens), isoform X [TaxId: 9606]}
Probab=33.75 E-value=5.5 Score=30.16 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=17.8
Q ss_pred EEEecCCcccCCCCCCCCCCCC
Q 019180 68 AVLDVGGVYDPSNDCYDHHQKG 89 (345)
Q Consensus 68 iVvDVGgvYDp~~~rfDHHQr~ 89 (345)
+.+|+|+-||++++||-=--.|
T Consensus 26 ~~~n~G~~yntstg~FTaPv~G 47 (132)
T d1gr3a_ 26 ILYNRQQHYDPRTGIFTCQIPG 47 (132)
T ss_dssp EEECTTCCEETTTTEEECSSCE
T ss_pred EEECCCCCeeCCCCEEEeeEcc
Confidence 7889999999999988654433
No 12
>d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=32.08 E-value=9.8 Score=25.96 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=23.0
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhhhhh
Q 019180 104 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAID 149 (345)
Q Consensus 104 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kiy~~fi~~iDaiD 149 (345)
|-|.+|+||+-. ++.+..+++.+.+.+.+.+..+.
T Consensus 37 s~~t~Y~~F~~K-----------~~L~~~~~~~~~~~~~~~l~~~~ 71 (74)
T d1v7ba1 37 SKSGLIYHFPSR-----------HALLLGMHELLADDWDKELRDIT 71 (74)
T ss_dssp CHHHHHHHCSSH-----------HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcchHhhhCCCH-----------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 568899999855 22345566667777777666553
No 13
>d2id6a1 a.4.1.9 (A:1-75) Transcriptional regulator TM1030 {Thermotoga maritima [TaxId: 2336]}
Probab=30.95 E-value=14 Score=25.19 Aligned_cols=12 Identities=25% Similarity=0.717 Sum_probs=9.8
Q ss_pred cchhhHHHHHHH
Q 019180 104 SAGLVYKHFGKE 115 (345)
Q Consensus 104 SAGLIykhfG~~ 115 (345)
|-|-||+||+..
T Consensus 36 s~~~iY~~F~~k 47 (75)
T d2id6a1 36 AKGLIFHYFKNK 47 (75)
T ss_dssp CTHHHHHHHSSH
T ss_pred CHHHHHHHCCCH
Confidence 568899999865
No 14
>d1c3ha_ b.22.1.1 (A:) 30 kDa adipocyte complement-related protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.58 E-value=6.7 Score=30.20 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=18.1
Q ss_pred EEEecCCcccCCCCCCCCCCCC
Q 019180 68 AVLDVGGVYDPSNDCYDHHQKG 89 (345)
Q Consensus 68 iVvDVGgvYDp~~~rfDHHQr~ 89 (345)
+.+|+|+-||++++||==-..|
T Consensus 28 ~~~N~G~~yntStg~FTaPv~G 49 (137)
T d1c3ha_ 28 IFYNQQNHYDGSTGKFYCNIPG 49 (137)
T ss_dssp EEECTTCCEETTTTEEECCSCE
T ss_pred EEECCCCcccCCCCEEEeCcCC
Confidence 7899999999999988655444
No 15
>d1t33a1 a.4.1.9 (A:1-88) Putative transcriptional repressor YbiH {Salmonella typhimurium [TaxId: 90371]}
Probab=29.13 E-value=13 Score=26.20 Aligned_cols=12 Identities=17% Similarity=0.313 Sum_probs=9.7
Q ss_pred cchhhHHHHHHH
Q 019180 104 SAGLVYKHFGKE 115 (345)
Q Consensus 104 SAGLIykhfG~~ 115 (345)
|-|.+|+||+-.
T Consensus 44 s~~~~Y~~F~sK 55 (88)
T d1t33a1 44 NIAAITYYFGSK 55 (88)
T ss_dssp CHHHHHHHHSSH
T ss_pred ChhhhhccCCCH
Confidence 678999999843
No 16
>d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=28.26 E-value=8.7 Score=26.69 Aligned_cols=32 Identities=6% Similarity=0.047 Sum_probs=19.5
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhh
Q 019180 104 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAID 146 (345)
Q Consensus 104 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kiy~~fi~~iD 146 (345)
|-|.+|+||+.. ++.+..+++.+++.+++.+.
T Consensus 40 s~~t~y~~F~sK-----------e~L~~~~~~~~~~~~~~~~~ 71 (78)
T d2o7ta1 40 GVATLYRNFPDR-----------FTLDMACAQYLFNVVISLQL 71 (78)
T ss_dssp CHHHHHHHCSSH-----------HHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHCcCH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 678999999865 12334555555555555443
No 17
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=26.33 E-value=15 Score=25.17 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=21.7
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhhhh
Q 019180 104 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAI 148 (345)
Q Consensus 104 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kiy~~fi~~iDai 148 (345)
|-|.+|+||+-. ++.+..++......+.+.++.+
T Consensus 39 s~~~lY~~F~~K-----------~~L~~~~~~~~~~~~~~~~~~~ 72 (77)
T d2gfna1 39 STGVLNHYFGSR-----------HELLLAALRRAGDIQGDRYRTI 72 (77)
T ss_dssp CHHHHHHHTSSH-----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHCcCH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999855 2234555566666666666544
No 18
>d1wpna_ c.107.1.1 (A:) Manganese-dependent inorganic pyrophosphatase (family II) {Bacillus subtilis [TaxId: 1423]}
Probab=25.85 E-value=28 Score=27.42 Aligned_cols=52 Identities=17% Similarity=0.089 Sum_probs=27.9
Q ss_pred CCCCCCCCccccccCC--CccccccchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 019180 82 CYDHHQKGFEEVFGHG--FSTKLSSAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVY 138 (345)
Q Consensus 82 rfDHHQr~F~~t~~~~--~~~~lSSAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kiy 138 (345)
.+|||..+=...+... ...+.||+..|..++-++ ++.+++.+.-..+|.-|+
T Consensus 93 vIDHH~~~~~~~~~~~~~~~~~~sst~~iv~~l~~~-----~~~~i~~~~A~~L~~gI~ 146 (187)
T d1wpna_ 93 VIDHHRIANFETAEPLYYRAEPVGCTATILNKMYKE-----NNVKIEKEIAGLMLSAII 146 (187)
T ss_dssp EEECSCCCSCCCSSCCEEEECSSSCHHHHHHHHHHH-----TTCCCCHHHHHHHHHHHH
T ss_pred EEecccccccCcccceeeecCccccHHHHHHHHHHH-----hCCCCCHHHHHHHHHHHH
Confidence 4899974311221111 123578888777654333 466666555555555554
No 19
>d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=25.41 E-value=15 Score=25.17 Aligned_cols=33 Identities=18% Similarity=0.374 Sum_probs=21.3
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHhhh
Q 019180 104 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDA 147 (345)
Q Consensus 104 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kiy~~fi~~iDa 147 (345)
|-|.+|+||+.. ++.+..++..++..++..++.
T Consensus 37 s~~s~y~~F~~K-----------~~l~~~~~~~~~~~~~~~~~~ 69 (79)
T d2fbqa1 37 NLAAVNYHFGSK-----------KALIQAVFSRFLGPFCASLEK 69 (79)
T ss_dssp CHHHHHHHTCSH-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHCcCH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence 557899999855 223456666666666666643
No 20
>d1sgma1 a.4.1.9 (A:5-77) Putative transcriptional regulator YxaF {Bacillus subtilis [TaxId: 1423]}
Probab=24.05 E-value=28 Score=23.28 Aligned_cols=14 Identities=36% Similarity=0.686 Sum_probs=10.8
Q ss_pred cchhhHHHH-H-HHHH
Q 019180 104 SAGLVYKHF-G-KELI 117 (345)
Q Consensus 104 SAGLIykhf-G-~~ii 117 (345)
|-|-+|+|| + |+.|
T Consensus 35 s~~~iy~~F~~~Ke~L 50 (73)
T d1sgma1 35 PKGSLYHFFPNGKEEL 50 (73)
T ss_dssp CSCHHHHSTTTCHHHH
T ss_pred CHHHHHHHcCCCHHHH
Confidence 567899999 7 7754
No 21
>d2d6ya1 a.4.1.9 (A:7-74) Putative regulator SCO4008 {Streptomyces coelicolor [TaxId: 1902]}
Probab=23.27 E-value=18 Score=24.28 Aligned_cols=12 Identities=25% Similarity=0.708 Sum_probs=9.9
Q ss_pred cchhhHHHHHHH
Q 019180 104 SAGLVYKHFGKE 115 (345)
Q Consensus 104 SAGLIykhfG~~ 115 (345)
|-|.+|+|||..
T Consensus 35 s~~~~Y~~F~~K 46 (68)
T d2d6ya1 35 NKQLIYAYYGNK 46 (68)
T ss_dssp CHHHHHHHHSSH
T ss_pred chhHHHHHCcCH
Confidence 668899999865
No 22
>d2hyja1 a.4.1.9 (A:8-82) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=22.64 E-value=11 Score=25.84 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=20.2
Q ss_pred cchhhHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHh
Q 019180 104 SAGLVYKHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAI 145 (345)
Q Consensus 104 SAGLIykhfG~~ii~~~l~~~~~~~~~~~l~~kiy~~fi~~i 145 (345)
|-|.+|+|||.. ++.+..+++.....|.+.+
T Consensus 38 s~~~~Y~~F~~K-----------~~L~~~~~~~~~~~~~~~v 68 (75)
T d2hyja1 38 SKSGVHKHFGTK-----------ETLQISTLDKAFVDFWHRV 68 (75)
T ss_dssp CHHHHHTTCSSH-----------HHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHCcCH-----------HHHHHHHHHHHHHHHHHHH
Confidence 668899998755 2334556666666666554
No 23
>d1h3la_ a.177.1.1 (A:) Sigma factor SigR {Streptomyces coelicolor a3(2) [TaxId: 100226]}
Probab=21.91 E-value=62 Score=21.47 Aligned_cols=42 Identities=14% Similarity=0.076 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Q 019180 188 ERENEAFQQGMDLAGKEFLDTVRFYVRSWLPARSIVVECIAE 229 (345)
Q Consensus 188 ~~~d~~F~~A~~l~~~ef~~~v~~~~~~~lpAr~~V~~A~~~ 229 (345)
.+..++|++.+.--...+...+.++....--|.++|++++-+
T Consensus 3 ~~~~~~f~~~~~~y~~~l~~~~~~~~~d~~~aeDivQd~f~~ 44 (75)
T d1h3la_ 3 AERSARFERDALEFLDQMYSAALRMTRNPADAEDLVQETYAK 44 (75)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 345677999888777788888888888888888888887554
No 24
>d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=20.99 E-value=20 Score=24.08 Aligned_cols=12 Identities=25% Similarity=0.218 Sum_probs=9.4
Q ss_pred cchhhHHHHHHH
Q 019180 104 SAGLVYKHFGKE 115 (345)
Q Consensus 104 SAGLIykhfG~~ 115 (345)
|-|-+|+||+..
T Consensus 36 s~~t~Y~~F~~K 47 (73)
T d1t56a1 36 SRPTFYFYFPSK 47 (73)
T ss_dssp CHHHHHHHCSSH
T ss_pred CHHHHHHHCcCH
Confidence 568899999854
Done!