Query 019181
Match_columns 345
No_of_seqs 217 out of 1691
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 07:21:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019181.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019181hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 3E-48 6.5E-53 373.5 33.7 312 8-336 6-338 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 3.8E-45 8.2E-50 349.8 26.9 247 70-334 41-297 (398)
3 PTZ00165 aspartyl protease; Pr 100.0 8.1E-44 1.7E-48 344.7 28.0 224 70-334 115-356 (482)
4 cd05478 pepsin_A Pepsin A, asp 100.0 8.4E-42 1.8E-46 317.9 24.6 228 70-343 5-248 (317)
5 cd06096 Plasmepsin_5 Plasmepsi 100.0 1.5E-41 3.3E-46 317.2 25.3 235 74-331 2-257 (326)
6 cd05490 Cathepsin_D2 Cathepsin 100.0 1.1E-41 2.4E-46 318.2 23.6 228 71-343 2-248 (325)
7 cd05477 gastricsin Gastricsins 100.0 4.5E-41 9.7E-46 313.2 24.2 223 73-343 1-243 (318)
8 cd06098 phytepsin Phytepsin, a 100.0 5.9E-41 1.3E-45 312.1 23.3 218 70-343 5-240 (317)
9 cd05486 Cathespin_E Cathepsin 100.0 4.3E-41 9.4E-46 313.0 21.4 219 76-343 1-239 (316)
10 cd05488 Proteinase_A_fungi Fun 100.0 2.3E-40 5E-45 308.6 24.1 224 70-343 5-247 (320)
11 cd06097 Aspergillopepsin_like 100.0 1.6E-40 3.5E-45 303.8 22.1 222 76-343 1-242 (278)
12 cd05487 renin_like Renin stimu 100.0 2.5E-40 5.3E-45 309.2 23.5 228 70-343 3-248 (326)
13 cd05485 Cathepsin_D_like Cathe 100.0 3.1E-40 6.8E-45 308.7 22.9 228 70-343 6-252 (329)
14 PTZ00147 plasmepsin-1; Provisi 100.0 2.4E-39 5.2E-44 311.3 23.5 225 70-343 134-375 (453)
15 PTZ00013 plasmepsin 4 (PM4); P 100.0 1.2E-38 2.7E-43 305.9 23.3 219 70-342 133-373 (450)
16 cd05473 beta_secretase_like Be 100.0 6.8E-38 1.5E-42 296.9 24.4 218 74-335 2-241 (364)
17 cd05472 cnd41_like Chloroplast 100.0 7.2E-38 1.6E-42 289.2 21.6 194 75-335 1-201 (299)
18 cd05471 pepsin_like Pepsin-lik 100.0 1.4E-37 3E-42 284.4 23.2 218 76-336 1-233 (283)
19 cd05475 nucellin_like Nucellin 100.0 1.1E-36 2.3E-41 277.7 22.4 191 74-324 1-196 (273)
20 cd05489 xylanase_inhibitor_I_l 100.0 1.6E-36 3.5E-41 286.0 22.6 232 82-336 2-260 (362)
21 cd05476 pepsin_A_like_plant Ch 100.0 1.8E-35 4E-40 268.5 19.8 184 75-324 1-195 (265)
22 PF00026 Asp: Eukaryotic aspar 100.0 1.7E-35 3.7E-40 275.1 14.3 223 75-343 1-240 (317)
23 cd05474 SAP_like SAPs, pepsin- 100.0 4.7E-34 1E-38 263.2 20.6 193 75-343 2-221 (295)
24 PF14543 TAXi_N: Xylanase inhi 100.0 2.8E-31 6E-36 223.3 14.6 162 76-261 1-164 (164)
25 cd05470 pepsin_retropepsin_lik 99.9 5.6E-23 1.2E-27 161.2 11.3 108 78-223 1-109 (109)
26 PF14541 TAXi_C: Xylanase inhi 98.6 1.3E-07 2.8E-12 79.2 7.0 60 278-337 1-61 (161)
27 cd05483 retropepsin_like_bacte 98.0 1.8E-05 4E-10 59.6 6.3 93 75-225 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 96.4 0.014 3E-07 46.3 7.0 31 72-104 8-38 (121)
29 PF13650 Asp_protease_2: Aspar 96.0 0.036 7.7E-07 40.8 7.2 26 78-105 1-26 (90)
30 cd05479 RP_DDI RP_DDI; retrope 94.4 0.3 6.6E-06 38.7 8.4 34 72-107 13-46 (124)
31 cd05484 retropepsin_like_LTR_2 93.6 0.089 1.9E-06 39.2 3.6 29 76-106 1-29 (91)
32 COG3577 Predicted aspartyl pro 92.9 0.63 1.4E-05 39.9 8.0 77 70-187 100-176 (215)
33 PF11925 DUF3443: Protein of u 91.9 2.5 5.5E-05 39.6 11.2 58 163-226 83-149 (370)
34 PF13975 gag-asp_proteas: gag- 90.5 0.46 1E-05 33.7 4.1 35 72-108 5-39 (72)
35 PF13650 Asp_protease_2: Aspar 89.7 0.47 1E-05 34.6 3.7 29 286-327 3-31 (90)
36 cd05484 retropepsin_like_LTR_2 88.8 0.59 1.3E-05 34.7 3.7 31 285-328 4-34 (91)
37 PF13975 gag-asp_proteas: gag- 87.5 1 2.2E-05 31.9 4.1 30 285-327 12-41 (72)
38 PF00077 RVP: Retroviral aspar 87.3 0.89 1.9E-05 34.2 3.9 28 77-106 7-34 (100)
39 TIGR02281 clan_AA_DTGA clan AA 87.2 0.84 1.8E-05 36.0 3.8 36 276-327 9-44 (121)
40 cd05483 retropepsin_like_bacte 85.9 1.4 3.1E-05 32.4 4.3 30 285-327 6-35 (96)
41 cd06095 RP_RTVL_H_like Retrope 84.8 1.2 2.5E-05 32.8 3.3 29 286-327 3-31 (86)
42 cd05479 RP_DDI RP_DDI; retrope 80.4 2.3 5.1E-05 33.6 3.7 29 286-327 21-49 (124)
43 PF00077 RVP: Retroviral aspar 79.0 1.7 3.6E-05 32.7 2.4 29 284-325 8-36 (100)
44 cd06095 RP_RTVL_H_like Retrope 78.9 2.7 5.7E-05 30.8 3.4 26 79-106 2-27 (86)
45 cd05482 HIV_retropepsin_like R 76.2 3.7 7.9E-05 30.4 3.4 25 79-105 2-26 (87)
46 cd05481 retropepsin_like_LTR_1 73.8 3.6 7.9E-05 30.7 2.9 21 308-328 13-33 (93)
47 COG3577 Predicted aspartyl pro 72.2 8.4 0.00018 33.2 5.0 37 275-327 102-138 (215)
48 PF09668 Asp_protease: Asparty 67.4 6.8 0.00015 31.1 3.3 30 285-327 28-57 (124)
49 cd05470 pepsin_retropepsin_lik 57.6 8.7 0.00019 29.0 2.3 18 307-324 13-30 (109)
50 TIGR03698 clan_AA_DTGF clan AA 54.3 8.6 0.00019 29.5 1.8 21 307-327 18-39 (107)
51 PF12384 Peptidase_A2B: Ty3 tr 53.8 19 0.0004 30.0 3.6 30 74-105 33-62 (177)
52 COG5550 Predicted aspartyl pro 49.9 10 0.00023 29.8 1.6 21 308-328 29-50 (125)
53 PF09668 Asp_protease: Asparty 49.6 30 0.00065 27.4 4.2 36 73-110 22-57 (124)
54 cd05481 retropepsin_like_LTR_1 45.1 18 0.0004 26.9 2.3 23 80-104 3-26 (93)
55 PF08284 RVP_2: Retroviral asp 42.5 57 0.0012 26.1 4.9 19 308-326 35-53 (135)
56 PF12384 Peptidase_A2B: Ty3 tr 40.0 49 0.0011 27.6 4.1 23 307-329 47-69 (177)
57 TIGR03698 clan_AA_DTGF clan AA 38.0 45 0.00097 25.5 3.5 28 77-104 1-33 (107)
58 cd00303 retropepsin_like Retro 37.7 59 0.0013 21.9 4.0 20 308-327 12-31 (92)
59 cd05482 HIV_retropepsin_like R 36.6 38 0.00083 25.0 2.8 25 286-323 3-27 (87)
60 PLN03146 aspartyl protease fam 33.8 42 0.00091 32.7 3.4 15 307-321 99-113 (431)
61 cd05480 NRIP_C NRIP_C; putativ 30.7 70 0.0015 24.3 3.3 28 286-326 3-30 (103)
62 PF05984 Cytomega_UL20A: Cytom 30.5 47 0.001 24.1 2.3 20 4-23 2-21 (100)
63 cd05475 nucellin_like Nucellin 30.4 73 0.0016 28.6 4.2 32 74-105 157-194 (273)
64 cd06098 phytepsin Phytepsin, a 26.0 68 0.0015 29.5 3.3 16 308-323 26-41 (317)
65 PF08284 RVP_2: Retroviral asp 24.9 1.1E+02 0.0023 24.5 3.8 30 73-104 19-48 (135)
66 PTZ00165 aspartyl protease; Pr 23.8 47 0.001 32.9 1.7 17 308-324 136-152 (482)
67 PF08194 DIM: DIM protein; In 23.1 1.4E+02 0.003 18.1 3.0 11 9-19 8-18 (36)
68 cd05478 pepsin_A Pepsin A, asp 22.9 88 0.0019 28.8 3.4 15 308-322 26-40 (317)
69 cd05476 pepsin_A_like_plant Ch 22.1 1E+02 0.0022 27.5 3.5 18 88-105 176-193 (265)
70 cd06094 RP_Saci_like RP_Saci_l 21.2 58 0.0013 24.1 1.4 23 304-326 8-30 (89)
71 cd05489 xylanase_inhibitor_I_l 21.2 1.1E+02 0.0023 29.0 3.6 16 90-105 231-246 (362)
72 cd05471 pepsin_like Pepsin-lik 21.0 92 0.002 27.6 3.0 35 73-107 179-221 (283)
73 PTZ00147 plasmepsin-1; Provisi 20.6 64 0.0014 31.7 2.0 16 308-323 155-170 (453)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=3e-48 Score=373.47 Aligned_cols=312 Identities=30% Similarity=0.495 Sum_probs=242.2
Q ss_pred HHHHHHHHHHHhhcccCcceeEEeEEecCCC------c----cCHHHHHHHhHHHHHHHhcc--cCcCCCCCCCCCCcee
Q 019181 8 CLCIVLIATAAVGGVSSNHGVFSVKYRYAGR------E----RSLSLLKEHDARRQQRILAG--VDLPLGGSSRPDGVGL 75 (345)
Q Consensus 8 ~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~------~----~~~~~~~~~~~~r~~~~~~~--~~~p~~~~~~~~~~~~ 75 (345)
.|+++.+.+.+...+.....+++|.|+.++. . ..+.+..+|+++|.+++.+. ...|+. .+....++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~ 84 (431)
T PLN03146 6 ALCLFSFSELSAAEAPKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDASPNDPQ-SDLISNGGE 84 (431)
T ss_pred HHHHHHHhhhhhccccCCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhccccCCccc-cCcccCCcc
Confidence 3455555555555666677889999887541 1 22455566666666665322 223333 222346789
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCCcccCCCCCCCCCCCCCC
Q 019181 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTAN 155 (345)
Q Consensus 76 Y~~~i~vGtP~q~~~v~~DTGS~~~wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~~~C~~~ 155 (345)
|+++|.||||+|++.|++||||+++||+|.+|..|..+.. +.|||++|+||+.++|+++.|...+.. ..|..+
T Consensus 85 Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~-----~~fdps~SST~~~~~C~s~~C~~~~~~--~~c~~~ 157 (431)
T PLN03146 85 YLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVS-----PLFDPKKSSTYKDVSCDSSQCQALGNQ--ASCSDE 157 (431)
T ss_pred EEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCCC-----CcccCCCCCCCcccCCCCcccccCCCC--CCCCCC
Confidence 9999999999999999999999999999999999987643 789999999999999999999866532 347666
Q ss_pred CCCCCceeeCCCCcEEEEEEEEEEEEecccCCccccccCceeEEeeeeeccCCCCCCCCCCcceeeecCCCCCcHHHHhh
Q 019181 156 TSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLA 235 (345)
Q Consensus 156 ~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~s~~~ql~ 235 (345)
+.|.|.+.|+||+.+.|.+++|+|+|++.... ...++++.|||++...+.|. ...+||||||++..|++.||.
T Consensus 158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~---~~~v~~~~FGc~~~~~g~f~----~~~~GilGLG~~~~Sl~sql~ 230 (431)
T PLN03146 158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGR---PVSFPGIVFGCGHNNGGTFD----EKGSGIVGLGGGPLSLISQLG 230 (431)
T ss_pred CCCeeEEEeCCCCceeeEEEEEEEEeccCCCC---cceeCCEEEeCCCCCCCCcc----CCCceeEecCCCCccHHHHhh
Confidence 78999999999998799999999999875422 12467999999998776553 247899999999999999997
Q ss_pred hcCCCCCceEEeecCC----CCcceEEeCCCCC---CCceEecCCCC--CCceEEEEeEEEECCEEeeCCCcccccCCCc
Q 019181 236 SSGGVRKMFAHCLDGI----NGGGIFAIGHVVQ---PEVNKTPLVPN--QPHYSINMTAVQVGLDFLNLPTDVFGVGDNK 306 (345)
Q Consensus 236 ~~g~i~~~Fs~~l~~~----~~~G~l~~Gg~d~---~~~~~~p~~~~--~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~ 306 (345)
. .+.++||+||.+. ...|.|+||+... ..+.|+|++.+ +.+|.|.|++|+||++.+.++...+...+..
T Consensus 231 ~--~~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g 308 (431)
T PLN03146 231 S--SIGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEG 308 (431)
T ss_pred H--hhCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCC
Confidence 5 3556999999652 2479999999642 34899999743 4689999999999999988766655323345
Q ss_pred cEEEcccccccccChHHHHHHHHHHHhhcc
Q 019181 307 GTIIDSGTTLAYLPEMVYEPLVSKVCDVIE 336 (345)
Q Consensus 307 ~~i~DTGts~~~lp~~~~~~i~~~i~~~~~ 336 (345)
.+||||||++++||+++|+++.++|.+.+.
T Consensus 309 ~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~ 338 (431)
T PLN03146 309 NIIIDSGTTLTLLPSDFYSELESAVEEAIG 338 (431)
T ss_pred cEEEeCCccceecCHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999887664
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-45 Score=349.81 Aligned_cols=247 Identities=37% Similarity=0.688 Sum_probs=212.8
Q ss_pred CCCceeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCC-CCCCCCCCCccccccCCCCCCCcceecCCCcccCCCCCCC
Q 019181 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK-ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGP 148 (345)
Q Consensus 70 ~~~~~~Y~~~i~vGtP~q~~~v~~DTGS~~~wv~~~~C~-~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~ 148 (345)
.+.++.|+++|.||||+|+|.|+|||||+++||+|..|. .|..+.. +.|||++|+||+.+.|+++.|...+..
T Consensus 41 ~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~-----~~f~p~~SSt~~~~~c~~~~c~~~~~~- 114 (398)
T KOG1339|consen 41 SYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHN-----PIFDPSASSTYKSVGCSSPRCKSLPQS- 114 (398)
T ss_pred cccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCC-----CccCccccccccccCCCCccccccccC-
Confidence 567889999999999999999999999999999999999 7986532 449999999999999999999998755
Q ss_pred CCCCCCCCCCCCceeeCCCCcEEEEEEEEEEEEecccCCccccccCceeEEeeeeeccCCCCCCCCCCcceeeecCCCCC
Q 019181 149 LTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS 228 (345)
Q Consensus 149 ~~~C~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~ 228 (345)
|..++.|.|.+.|+||+.+.|.+++|+|++++.+ ...++++.|||+....+. .... .+.+||||||+...
T Consensus 115 ---~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~-----~~~~~~~~FGc~~~~~g~-~~~~-~~~dGIlGLg~~~~ 184 (398)
T KOG1339|consen 115 ---CSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTT-----SLPVPNQTFGCGTNNPGS-FGLF-AAFDGILGLGRGSL 184 (398)
T ss_pred ---cccCCcCceEEEeCCCCceeEEEEEEEEEEcccc-----ccccccEEEEeeecCccc-cccc-cccceEeecCCCCc
Confidence 8889999999999997777999999999999853 123568999999998765 2201 46899999999999
Q ss_pred cHHHHhhhcCCCCCceEEeecCCC----CcceEEeCCCCCC----CceEecCCCCCC-ceEEEEeEEEECCEEeeCCCcc
Q 019181 229 SMISQLASSGGVRKMFAHCLDGIN----GGGIFAIGHVVQP----EVNKTPLVPNQP-HYSINMTAVQVGLDFLNLPTDV 299 (345)
Q Consensus 229 s~~~ql~~~g~i~~~Fs~~l~~~~----~~G~l~~Gg~d~~----~~~~~p~~~~~~-~w~v~l~~i~v~~~~~~~~~~~ 299 (345)
+++.|+...+...++||+||.+.. .+|.|+||++|+. .+.|+|++.... +|.+.+.+|+|+++. .++...
T Consensus 185 S~~~q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~-~~~~~~ 263 (398)
T KOG1339|consen 185 SVPSQLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKR-PIGSSL 263 (398)
T ss_pred cceeecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCcc-CCCcce
Confidence 999999998777679999999873 4799999999964 478999986544 999999999999977 555555
Q ss_pred cccCCCccEEEcccccccccChHHHHHHHHHHHhh
Q 019181 300 FGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKVCDV 334 (345)
Q Consensus 300 ~~~~~~~~~i~DTGts~~~lp~~~~~~i~~~i~~~ 334 (345)
+..+ ..++|+||||++++||.++|++|.++|++.
T Consensus 264 ~~~~-~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~ 297 (398)
T KOG1339|consen 264 FCTD-GGGAIIDSGTSLTYLPTSAYNALREAIGAE 297 (398)
T ss_pred EecC-CCCEEEECCcceeeccHHHHHHHHHHHHhh
Confidence 4422 578999999999999999999999999986
No 3
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=8.1e-44 Score=344.75 Aligned_cols=224 Identities=22% Similarity=0.335 Sum_probs=187.2
Q ss_pred CCCceeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCCcccCCCCCCCC
Q 019181 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPL 149 (345)
Q Consensus 70 ~~~~~~Y~~~i~vGtP~q~~~v~~DTGS~~~wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~ 149 (345)
++.+..|+++|+||||||+|.|+|||||++|||++..|..| .|..++.|||++|+||+.+.+..
T Consensus 115 n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~-----~C~~~~~yd~s~SSTy~~~~~~~----------- 178 (482)
T PTZ00165 115 NFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSG-----GCAPHRKFDPKKSSTYTKLKLGD----------- 178 (482)
T ss_pred cccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcc-----cccccCCCCccccCCcEecCCCC-----------
Confidence 88999999999999999999999999999999999999742 12334899999999999743211
Q ss_pred CCCCCCCCCCCceeeCCCCcEEEEEEEEEEEEecccCCccccccCceeEEeeeeeccC-CCCCCCCCCcceeeecCCCC-
Q 019181 150 TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSG-NLDSTNEEALDGIIGFGKSN- 227 (345)
Q Consensus 150 ~~C~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~~~~GilGLg~~~- 227 (345)
....+.+.|++|+. .|.+++|+|++++.. ++++.||+++..++ .|.. .++|||||||++.
T Consensus 179 ------~~~~~~i~YGsGs~-~G~l~~DtV~ig~l~--------i~~q~FG~a~~~s~~~f~~---~~~DGILGLg~~~~ 240 (482)
T PTZ00165 179 ------ESAETYIQYGTGEC-VLALGKDTVKIGGLK--------VKHQSIGLAIEESLHPFAD---LPFDGLVGLGFPDK 240 (482)
T ss_pred ------ccceEEEEeCCCcE-EEEEEEEEEEECCEE--------EccEEEEEEEecccccccc---ccccceeecCCCcc
Confidence 11246799999986 899999999999864 56899999998754 3443 5789999999975
Q ss_pred --------CcHHHHhhhcCCC-CCceEEeecCC-CCcceEEeCCCCC------CCceEecCCCCCCceEEEEeEEEECCE
Q 019181 228 --------SSMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQ------PEVNKTPLVPNQPHYSINMTAVQVGLD 291 (345)
Q Consensus 228 --------~s~~~ql~~~g~i-~~~Fs~~l~~~-~~~G~l~~Gg~d~------~~~~~~p~~~~~~~w~v~l~~i~v~~~ 291 (345)
.+++++|++||+| +++||+||++. ..+|+|+|||+|+ +++.|+|+. ...+|.|.+++|+|+++
T Consensus 241 s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~-~~~yW~i~l~~i~vgg~ 319 (482)
T PTZ00165 241 DFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVI-STDYWEIEVVDILIDGK 319 (482)
T ss_pred cccccCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEcc-ccceEEEEeCeEEECCE
Confidence 3589999999999 79999999865 4579999999984 358999987 56899999999999998
Q ss_pred EeeCCCcccccCCCccEEEcccccccccChHHHHHHHHHHHhh
Q 019181 292 FLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKVCDV 334 (345)
Q Consensus 292 ~~~~~~~~~~~~~~~~~i~DTGts~~~lp~~~~~~i~~~i~~~ 334 (345)
.+.... ++..+|+||||+++++|++++++|.+++++.
T Consensus 320 ~~~~~~------~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~ 356 (482)
T PTZ00165 320 SLGFCD------RKCKAAIDTGSSLITGPSSVINPLLEKIPLE 356 (482)
T ss_pred EeeecC------CceEEEEcCCCccEeCCHHHHHHHHHHcCCc
Confidence 775431 3466999999999999999999999999765
No 4
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=8.4e-42 Score=317.89 Aligned_cols=228 Identities=27% Similarity=0.404 Sum_probs=191.6
Q ss_pred CCCceeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCCcccCCCCCCCC
Q 019181 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPL 149 (345)
Q Consensus 70 ~~~~~~Y~~~i~vGtP~q~~~v~~DTGS~~~wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~ 149 (345)
++.+..|+++|.||||+|++.|+|||||+++||+|..|..|. |..++.|||++|+|++.
T Consensus 5 n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~-----c~~~~~f~~~~Sst~~~---------------- 63 (317)
T cd05478 5 NYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQA-----CSNHNRFNPRQSSTYQS---------------- 63 (317)
T ss_pred cccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCccc-----ccccCcCCCCCCcceee----------------
Confidence 667899999999999999999999999999999999887532 22348999999999987
Q ss_pred CCCCCCCCCCCceeeCCCCcEEEEEEEEEEEEecccCCccccccCceeEEeeeeeccCCCCCCCCCCcceeeecCCCCC-
Q 019181 150 TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS- 228 (345)
Q Consensus 150 ~~C~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~- 228 (345)
..+.|.+.|++|+ +.|.+++|+|++++.. ++++.|||+....+.+.. ....+||||||++..
T Consensus 64 ------~~~~~~~~yg~gs-~~G~~~~D~v~ig~~~--------i~~~~fg~~~~~~~~~~~--~~~~dGilGLg~~~~s 126 (317)
T cd05478 64 ------TGQPLSIQYGTGS-MTGILGYDTVQVGGIS--------DTNQIFGLSETEPGSFFY--YAPFDGILGLAYPSIA 126 (317)
T ss_pred ------CCcEEEEEECCce-EEEEEeeeEEEECCEE--------ECCEEEEEEEecCccccc--cccccceeeeccchhc
Confidence 3467899999998 5999999999999864 458999999877654422 235799999998643
Q ss_pred -----cHHHHhhhcCCC-CCceEEeecCCC-CcceEEeCCCCC----CCceEecCCCCCCceEEEEeEEEECCEEeeCCC
Q 019181 229 -----SMISQLASSGGV-RKMFAHCLDGIN-GGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPT 297 (345)
Q Consensus 229 -----s~~~ql~~~g~i-~~~Fs~~l~~~~-~~G~l~~Gg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~ 297 (345)
+++++|+++|+| +++||+||.+.. .+|.|+|||+|+ +++.|+|+. ...+|.|.+++|+|+++.+...
T Consensus 127 ~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~-~~~~w~v~l~~v~v~g~~~~~~- 204 (317)
T cd05478 127 SSGATPVFDNMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVT-AETYWQITVDSVTINGQVVACS- 204 (317)
T ss_pred ccCCCCHHHHHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECC-CCcEEEEEeeEEEECCEEEccC-
Confidence 589999999999 799999998863 468999999985 568999986 5689999999999999987532
Q ss_pred cccccCCCccEEEcccccccccChHHHHHHHHHHHhhc----ccccccCC
Q 019181 298 DVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKVCDVI----EYIFWRSS 343 (345)
Q Consensus 298 ~~~~~~~~~~~i~DTGts~~~lp~~~~~~i~~~i~~~~----~~~~~~~~ 343 (345)
.+..++|||||+++++|++++++|++++++.. .+.++|+.
T Consensus 205 ------~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~~~~~~~~~~C~~ 248 (317)
T cd05478 205 ------GGCQAIVDTGTSLLVGPSSDIANIQSDIGASQNQNGEMVVNCSS 248 (317)
T ss_pred ------CCCEEEECCCchhhhCCHHHHHHHHHHhCCccccCCcEEeCCcC
Confidence 23569999999999999999999999997643 35678874
No 5
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=1.5e-41 Score=317.22 Aligned_cols=235 Identities=27% Similarity=0.491 Sum_probs=190.7
Q ss_pred eeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCCcccCCCCCCCCCCCC
Q 019181 74 GLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCT 153 (345)
Q Consensus 74 ~~Y~~~i~vGtP~q~~~v~~DTGS~~~wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~~~C~ 153 (345)
+.|+++|.||||+|++.|+|||||+++||+|..|..|..+. ++.|||++|+|++.+.|++..|.. ...|.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~-----~~~y~~~~Sst~~~~~C~~~~c~~-----~~~~~ 71 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHM-----EPPYNLNNSITSSILYCDCNKCCY-----CLSCL 71 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCC-----CCCcCcccccccccccCCCccccc-----cCcCC
Confidence 58999999999999999999999999999999999997653 378999999999999999999943 23453
Q ss_pred CCCCCCCceeeCCCCcEEEEEEEEEEEEecccCCccccccCceeEEeeeeeccCCCCCCCCCCcceeeecCCCCC----c
Q 019181 154 ANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS----S 229 (345)
Q Consensus 154 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~----s 229 (345)
++.|.|.+.|++|+.+.|.+++|+|+|++..... ......++.|||+....+.|.. ...+||||||+... +
T Consensus 72 -~~~~~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~-~~~~~~~~~fg~~~~~~~~~~~---~~~~GilGLg~~~~~~~~~ 146 (326)
T cd06096 72 -NNKCEYSISYSEGSSISGFYFSDFVSFESYLNSN-SEKESFKKIFGCHTHETNLFLT---QQATGILGLSLTKNNGLPT 146 (326)
T ss_pred -CCcCcEEEEECCCCceeeEEEEEEEEeccCCCCc-cccccccEEeccCccccCcccc---cccceEEEccCCcccccCc
Confidence 4679999999999877999999999999765321 0011235789999988766644 56899999999763 2
Q ss_pred HHHHhhhcCCC-C--CceEEeecCCCCcceEEeCCCCC--------------CCceEecCCCCCCceEEEEeEEEECCEE
Q 019181 230 MISQLASSGGV-R--KMFAHCLDGINGGGIFAIGHVVQ--------------PEVNKTPLVPNQPHYSINMTAVQVGLDF 292 (345)
Q Consensus 230 ~~~ql~~~g~i-~--~~Fs~~l~~~~~~G~l~~Gg~d~--------------~~~~~~p~~~~~~~w~v~l~~i~v~~~~ 292 (345)
...+|.+++.+ . ++||+||++. .|.|+||++|+ +++.|+|+.. ..+|.|.+++|+|+++.
T Consensus 147 ~~~~l~~~~~~~~~~~~FS~~l~~~--~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~-~~~y~v~l~~i~vg~~~ 223 (326)
T cd06096 147 PIILLFTKRPKLKKDKIFSICLSED--GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITR-KYYYYVKLEGLSVYGTT 223 (326)
T ss_pred hhHHHHHhcccccCCceEEEEEcCC--CeEEEECccChhhhcccccccccccCCceEEeccC-CceEEEEEEEEEEcccc
Confidence 44556677666 4 8999999863 79999999985 4578999874 48999999999999876
Q ss_pred eeCCCcccccCCCccEEEcccccccccChHHHHHHHHHH
Q 019181 293 LNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKV 331 (345)
Q Consensus 293 ~~~~~~~~~~~~~~~~i~DTGts~~~lp~~~~~~i~~~i 331 (345)
.... ......++|||||++++||++++++|.+++
T Consensus 224 ~~~~-----~~~~~~aivDSGTs~~~lp~~~~~~l~~~~ 257 (326)
T cd06096 224 SNSG-----NTKGLGMLVDSGSTLSHFPEDLYNKINNFF 257 (326)
T ss_pred ccee-----cccCCCEEEeCCCCcccCCHHHHHHHHhhc
Confidence 1100 123566999999999999999999999988
No 6
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=1.1e-41 Score=318.22 Aligned_cols=228 Identities=26% Similarity=0.397 Sum_probs=187.5
Q ss_pred CCceeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCCcccCCCCCCCCC
Q 019181 71 DGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLT 150 (345)
Q Consensus 71 ~~~~~Y~~~i~vGtP~q~~~v~~DTGS~~~wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~~ 150 (345)
+.+.+|+++|.||||+|++.|+|||||+++||+|..|..|. ..|..++.|||++|+||+.
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~---~~C~~~~~y~~~~SsT~~~----------------- 61 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLD---IACWLHHKYNSSKSSTYVK----------------- 61 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCC---ccccCcCcCCcccCcceee-----------------
Confidence 45789999999999999999999999999999999887431 2233457999999999986
Q ss_pred CCCCCCCCCCceeeCCCCcEEEEEEEEEEEEecccCCccccccCceeEEeeeeeccCC-CCCCCCCCcceeeecCCCCC-
Q 019181 151 DCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGN-LDSTNEEALDGIIGFGKSNS- 228 (345)
Q Consensus 151 ~C~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~-~~~~~~~~~~GilGLg~~~~- 228 (345)
.+|.|.+.|++|+ +.|.+++|+|+|++.. ++++.||+++...+. |.. ...+||||||++..
T Consensus 62 -----~~~~~~i~Yg~G~-~~G~~~~D~v~~g~~~--------~~~~~Fg~~~~~~~~~~~~---~~~dGilGLg~~~~s 124 (325)
T cd05490 62 -----NGTEFAIQYGSGS-LSGYLSQDTVSIGGLQ--------VEGQLFGEAVKQPGITFIA---AKFDGILGMAYPRIS 124 (325)
T ss_pred -----CCcEEEEEECCcE-EEEEEeeeEEEECCEE--------EcCEEEEEEeeccCCcccc---eeeeEEEecCCcccc
Confidence 3568999999998 4999999999999864 458999999877542 322 46799999999653
Q ss_pred -----cHHHHhhhcCCC-CCceEEeecCC---CCcceEEeCCCCC----CCceEecCCCCCCceEEEEeEEEECCEEeeC
Q 019181 229 -----SMISQLASSGGV-RKMFAHCLDGI---NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLNL 295 (345)
Q Consensus 229 -----s~~~ql~~~g~i-~~~Fs~~l~~~---~~~G~l~~Gg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~ 295 (345)
+++++|++||.| +++||+||.+. ..+|+|+|||+|+ +++.|+|+. ...+|.|++++|+|+++....
T Consensus 125 ~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~-~~~~w~v~l~~i~vg~~~~~~ 203 (325)
T cd05490 125 VDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVT-RKAYWQIHMDQVDVGSGLTLC 203 (325)
T ss_pred ccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcC-cceEEEEEeeEEEECCeeeec
Confidence 588999999999 79999999864 2369999999996 568999986 568999999999998764321
Q ss_pred CCcccccCCCccEEEcccccccccChHHHHHHHHHHHhh----cccccccCC
Q 019181 296 PTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKVCDV----IEYIFWRSS 343 (345)
Q Consensus 296 ~~~~~~~~~~~~~i~DTGts~~~lp~~~~~~i~~~i~~~----~~~~~~~~~ 343 (345)
.....+||||||+++++|++++++|.+++++. ..+.++|+.
T Consensus 204 -------~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~~~~~~~~~~~C~~ 248 (325)
T cd05490 204 -------KGGCEAIVDTGTSLITGPVEEVRALQKAIGAVPLIQGEYMIDCEK 248 (325)
T ss_pred -------CCCCEEEECCCCccccCCHHHHHHHHHHhCCccccCCCEEecccc
Confidence 22456999999999999999999999999653 235677764
No 7
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=4.5e-41 Score=313.19 Aligned_cols=223 Identities=26% Similarity=0.454 Sum_probs=187.9
Q ss_pred ceeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCC--CCCCCCCCccccccCCCCCCCcceecCCCcccCCCCCCCCC
Q 019181 73 VGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKE--CPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLT 150 (345)
Q Consensus 73 ~~~Y~~~i~vGtP~q~~~v~~DTGS~~~wv~~~~C~~--C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~~ 150 (345)
|..|+++|.||||+|++.|+|||||+++||+|..|.. |.. ++.|||++|+||+.
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~-------~~~f~~~~SsT~~~----------------- 56 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTN-------HTKFNPSQSSTYST----------------- 56 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccccc-------cCCCCcccCCCceE-----------------
Confidence 4689999999999999999999999999999998874 543 47999999999986
Q ss_pred CCCCCCCCCCceeeCCCCcEEEEEEEEEEEEecccCCccccccCceeEEeeeeeccCC-CCCCCCCCcceeeecCCCC--
Q 019181 151 DCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGN-LDSTNEEALDGIIGFGKSN-- 227 (345)
Q Consensus 151 ~C~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~-~~~~~~~~~~GilGLg~~~-- 227 (345)
..|.|.+.|++|+. .|.+++|+|++++.. ++++.|||+....+. +. ....+||||||++.
T Consensus 57 -----~~~~~~~~Yg~Gs~-~G~~~~D~i~~g~~~--------i~~~~Fg~~~~~~~~~~~---~~~~~GilGLg~~~~s 119 (318)
T cd05477 57 -----NGETFSLQYGSGSL-TGIFGYDTVTVQGII--------ITNQEFGLSETEPGTNFV---YAQFDGILGLAYPSIS 119 (318)
T ss_pred -----CCcEEEEEECCcEE-EEEEEeeEEEECCEE--------EcCEEEEEEEeccccccc---ccceeeEeecCccccc
Confidence 46789999999985 999999999999864 558999999976542 22 14579999999853
Q ss_pred ----CcHHHHhhhcCCC-CCceEEeecCC--CCcceEEeCCCCC----CCceEecCCCCCCceEEEEeEEEECCEEeeCC
Q 019181 228 ----SSMISQLASSGGV-RKMFAHCLDGI--NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLNLP 296 (345)
Q Consensus 228 ----~s~~~ql~~~g~i-~~~Fs~~l~~~--~~~G~l~~Gg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~ 296 (345)
.+++++|+++|.| +++||+||++. ..+|.|+|||+|+ +++.|+|+. ...+|.|.+++|+|+++.+...
T Consensus 120 ~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~-~~~~w~v~l~~i~v~g~~~~~~ 198 (318)
T cd05477 120 AGGATTVMQGMMQQNLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVT-SETYWQIGIQGFQINGQATGWC 198 (318)
T ss_pred ccCCCCHHHHHHhcCCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecC-CceEEEEEeeEEEECCEEeccc
Confidence 5799999999999 79999999875 2469999999985 458999986 5689999999999999887532
Q ss_pred CcccccCCCccEEEcccccccccChHHHHHHHHHHHhhcc----cccccCC
Q 019181 297 TDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKVCDVIE----YIFWRSS 343 (345)
Q Consensus 297 ~~~~~~~~~~~~i~DTGts~~~lp~~~~~~i~~~i~~~~~----~~~~~~~ 343 (345)
. .+..+||||||+++++|++++++|++++++..+ +.++|+.
T Consensus 199 ~------~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~~~~~~~~~C~~ 243 (318)
T cd05477 199 S------QGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQDQYGQYVVNCNN 243 (318)
T ss_pred C------CCceeeECCCCccEECCHHHHHHHHHHhCCccccCCCEEEeCCc
Confidence 2 245699999999999999999999999987653 5667764
No 8
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=5.9e-41 Score=312.08 Aligned_cols=218 Identities=27% Similarity=0.396 Sum_probs=182.1
Q ss_pred CCCceeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCC---CCCCCCCCCccccccCCCCCCCcceecCCCcccCCCCC
Q 019181 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK---ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYG 146 (345)
Q Consensus 70 ~~~~~~Y~~~i~vGtP~q~~~v~~DTGS~~~wv~~~~C~---~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~ 146 (345)
++.+..|+++|.||||+|++.|+|||||+++||+|..|. .|.. ++.|||++|+|++.
T Consensus 5 n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~-------~~~y~~~~SsT~~~------------- 64 (317)
T cd06098 5 NYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYF-------HSKYKSSKSSTYKK------------- 64 (317)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccc-------cCcCCcccCCCccc-------------
Confidence 778899999999999999999999999999999999985 5654 37899999999986
Q ss_pred CCCCCCCCCCCCCCceeeCCCCcEEEEEEEEEEEEecccCCccccccCceeEEeeeeeccC-CCCCCCCCCcceeeecCC
Q 019181 147 GPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSG-NLDSTNEEALDGIIGFGK 225 (345)
Q Consensus 147 ~~~~~C~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~~~~GilGLg~ 225 (345)
....+.+.|++|+. .|.+++|+|++++.. ++++.||+++...+ .|.. ..++||||||+
T Consensus 65 ---------~~~~~~i~Yg~G~~-~G~~~~D~v~ig~~~--------v~~~~f~~~~~~~~~~~~~---~~~dGilGLg~ 123 (317)
T cd06098 65 ---------NGTSASIQYGTGSI-SGFFSQDSVTVGDLV--------VKNQVFIEATKEPGLTFLL---AKFDGILGLGF 123 (317)
T ss_pred ---------CCCEEEEEcCCceE-EEEEEeeEEEECCEE--------ECCEEEEEEEecCCccccc---cccceeccccc
Confidence 34578999999985 999999999999854 45899999987643 2332 56899999999
Q ss_pred CCC------cHHHHhhhcCCC-CCceEEeecCC---CCcceEEeCCCCC----CCceEecCCCCCCceEEEEeEEEECCE
Q 019181 226 SNS------SMISQLASSGGV-RKMFAHCLDGI---NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLD 291 (345)
Q Consensus 226 ~~~------s~~~ql~~~g~i-~~~Fs~~l~~~---~~~G~l~~Gg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~~~ 291 (345)
+.. +++.+|++||+| +++||+||.+. ...|.|+|||+|+ +++.|+|+. ..++|.+.+++|+|+++
T Consensus 124 ~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~-~~~~w~v~l~~i~v~g~ 202 (317)
T cd06098 124 QEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVT-RKGYWQFEMGDVLIGGK 202 (317)
T ss_pred cchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecC-cCcEEEEEeCeEEECCE
Confidence 653 478899999999 78999999864 2479999999996 458999996 56899999999999998
Q ss_pred EeeCCCcccccCCCccEEEcccccccccChHHHHHHHHHHHhhcccccccCC
Q 019181 292 FLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKVCDVIEYIFWRSS 343 (345)
Q Consensus 292 ~~~~~~~~~~~~~~~~~i~DTGts~~~lp~~~~~~i~~~i~~~~~~~~~~~~ 343 (345)
.+.... +...+||||||+++++|++++++|. +.++|+.
T Consensus 203 ~~~~~~------~~~~aivDTGTs~~~lP~~~~~~i~--------~~~~C~~ 240 (317)
T cd06098 203 STGFCA------GGCAAIADSGTSLLAGPTTIVTQIN--------SAVDCNS 240 (317)
T ss_pred EeeecC------CCcEEEEecCCcceeCCHHHHHhhh--------ccCCccc
Confidence 875432 2456999999999999999877664 5567764
No 9
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=4.3e-41 Score=312.98 Aligned_cols=219 Identities=26% Similarity=0.427 Sum_probs=184.2
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCC--CCCCCCCCCccccccCCCCCCCcceecCCCcccCCCCCCCCCCCC
Q 019181 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK--ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCT 153 (345)
Q Consensus 76 Y~~~i~vGtP~q~~~v~~DTGS~~~wv~~~~C~--~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~~~C~ 153 (345)
|+++|+||||+|+++|+|||||+++||++..|. .|.. ++.|||++|+|++.
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~-------~~~y~~~~SsT~~~-------------------- 53 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTK-------HNRFQPSESSTYVS-------------------- 53 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCc-------cceECCCCCccccc--------------------
Confidence 899999999999999999999999999999987 4654 37899999999986
Q ss_pred CCCCCCCceeeCCCCcEEEEEEEEEEEEecccCCccccccCceeEEeeeeeccCC-CCCCCCCCcceeeecCCCCC----
Q 019181 154 ANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGN-LDSTNEEALDGIIGFGKSNS---- 228 (345)
Q Consensus 154 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~-~~~~~~~~~~GilGLg~~~~---- 228 (345)
..|.|.+.|++|+ +.|.+++|+|++++.. ++++.||++....+. |.. ...+||||||++..
T Consensus 54 --~~~~~~i~Yg~g~-~~G~~~~D~v~ig~~~--------~~~~~fg~~~~~~~~~~~~---~~~dGilGLg~~~~s~~~ 119 (316)
T cd05486 54 --NGEAFSIQYGTGS-LTGIIGIDQVTVEGIT--------VQNQQFAESVSEPGSTFQD---SEFDGILGLAYPSLAVDG 119 (316)
T ss_pred --CCcEEEEEeCCcE-EEEEeeecEEEECCEE--------EcCEEEEEeeccCcccccc---cccceEeccCchhhccCC
Confidence 4578999999998 5999999999998754 458999998766542 322 56899999999754
Q ss_pred --cHHHHhhhcCCC-CCceEEeecCC---CCcceEEeCCCCC----CCceEecCCCCCCceEEEEeEEEECCEEeeCCCc
Q 019181 229 --SMISQLASSGGV-RKMFAHCLDGI---NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTD 298 (345)
Q Consensus 229 --s~~~ql~~~g~i-~~~Fs~~l~~~---~~~G~l~~Gg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~~ 298 (345)
+++++|++||+| +++||+||++. ...|.|+|||+|+ +++.|+|+. +.++|.|.+++|+|+++.+...
T Consensus 120 ~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~-~~~~w~v~l~~i~v~g~~~~~~-- 196 (316)
T cd05486 120 VTPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVT-VQGYWQIQLDNIQVGGTVIFCS-- 196 (316)
T ss_pred CCCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECC-CceEEEEEeeEEEEecceEecC--
Confidence 479999999999 79999999864 2479999999996 468999986 5789999999999999876422
Q ss_pred ccccCCCccEEEcccccccccChHHHHHHHHHHHhhc---ccccccCC
Q 019181 299 VFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKVCDVI---EYIFWRSS 343 (345)
Q Consensus 299 ~~~~~~~~~~i~DTGts~~~lp~~~~~~i~~~i~~~~---~~~~~~~~ 343 (345)
....+||||||+++++|++++++|.+++++.. .+.++|+.
T Consensus 197 -----~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~~~~~~~~~~C~~ 239 (316)
T cd05486 197 -----DGCQAIVDTGTSLITGPSGDIKQLQNYIGATATDGEYGVDCST 239 (316)
T ss_pred -----CCCEEEECCCcchhhcCHHHHHHHHHHhCCcccCCcEEEeccc
Confidence 23569999999999999999999999987642 36678874
No 10
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=2.3e-40 Score=308.56 Aligned_cols=224 Identities=25% Similarity=0.429 Sum_probs=189.1
Q ss_pred CCCceeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCC--CCCCCCCCCccccccCCCCCCCcceecCCCcccCCCCCC
Q 019181 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK--ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGG 147 (345)
Q Consensus 70 ~~~~~~Y~~~i~vGtP~q~~~v~~DTGS~~~wv~~~~C~--~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~ 147 (345)
++.+..|+++|.||||+|++.|+|||||+++||+|..|. .|.. ++.|+|++|+|++.
T Consensus 5 n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~-------~~~y~~~~Sst~~~-------------- 63 (320)
T cd05488 5 NYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFL-------HSKYDSSASSTYKA-------------- 63 (320)
T ss_pred ccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCC-------cceECCCCCcceee--------------
Confidence 667889999999999999999999999999999999997 4543 37999999999986
Q ss_pred CCCCCCCCCCCCCceeeCCCCcEEEEEEEEEEEEecccCCccccccCceeEEeeeeeccCC-CCCCCCCCcceeeecCCC
Q 019181 148 PLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGN-LDSTNEEALDGIIGFGKS 226 (345)
Q Consensus 148 ~~~~C~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~-~~~~~~~~~~GilGLg~~ 226 (345)
+.|.+.+.|++|+ +.|.+++|+|++++.. ++++.|||+....+. +.. ...+||||||++
T Consensus 64 --------~~~~~~~~y~~g~-~~G~~~~D~v~ig~~~--------~~~~~f~~a~~~~g~~~~~---~~~dGilGLg~~ 123 (320)
T cd05488 64 --------NGTEFKIQYGSGS-LEGFVSQDTLSIGDLT--------IKKQDFAEATSEPGLAFAF---GKFDGILGLAYD 123 (320)
T ss_pred --------CCCEEEEEECCce-EEEEEEEeEEEECCEE--------ECCEEEEEEecCCCcceee---eeeceEEecCCc
Confidence 4678999999998 4999999999998864 458999999876542 222 457999999997
Q ss_pred CC------cHHHHhhhcCCC-CCceEEeecCC-CCcceEEeCCCCC----CCceEecCCCCCCceEEEEeEEEECCEEee
Q 019181 227 NS------SMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLN 294 (345)
Q Consensus 227 ~~------s~~~ql~~~g~i-~~~Fs~~l~~~-~~~G~l~~Gg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~ 294 (345)
.. +.+.+|++||+| +++||+||.+. ...|.|+|||+|+ +++.|+|++ ...+|.|.+++|+||++.+.
T Consensus 124 ~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~w~v~l~~i~vg~~~~~ 202 (320)
T cd05488 124 TISVNKIVPPFYNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVR-RKAYWEVELEKIGLGDEELE 202 (320)
T ss_pred cccccCCCCHHHHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCC-cCcEEEEEeCeEEECCEEec
Confidence 64 357789999999 79999999875 4579999999985 569999997 56899999999999998775
Q ss_pred CCCcccccCCCccEEEcccccccccChHHHHHHHHHHHhhc----ccccccCC
Q 019181 295 LPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKVCDVI----EYIFWRSS 343 (345)
Q Consensus 295 ~~~~~~~~~~~~~~i~DTGts~~~lp~~~~~~i~~~i~~~~----~~~~~~~~ 343 (345)
.. +..++|||||+++++|++++++|.+++++.. .+.++|+.
T Consensus 203 ~~--------~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~~~~~~~~~~C~~ 247 (320)
T cd05488 203 LE--------NTGAAIDTGTSLIALPSDLAEMLNAEIGAKKSWNGQYTVDCSK 247 (320)
T ss_pred cC--------CCeEEEcCCcccccCCHHHHHHHHHHhCCccccCCcEEeeccc
Confidence 32 3459999999999999999999999997653 25677764
No 11
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=1.6e-40 Score=303.78 Aligned_cols=222 Identities=27% Similarity=0.404 Sum_probs=185.0
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCCcccCCCCCCCCCCCCCC
Q 019181 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTAN 155 (345)
Q Consensus 76 Y~~~i~vGtP~q~~~v~~DTGS~~~wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~~~C~~~ 155 (345)
|+++|+||||+|++.|+|||||+++||+|..|..|..+ .++.||+++|+|++..
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~-----~~~~y~~~~Sst~~~~--------------------- 54 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQG-----GHKLYDPSKSSTAKLL--------------------- 54 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhc-----cCCcCCCccCccceec---------------------
Confidence 89999999999999999999999999999999988643 2367999999999863
Q ss_pred CCCCCceeeCCCCcEEEEEEEEEEEEecccCCccccccCceeEEeeeeeccCC-CCCCCCCCcceeeecCCCCC------
Q 019181 156 TSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGN-LDSTNEEALDGIIGFGKSNS------ 228 (345)
Q Consensus 156 ~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~-~~~~~~~~~~GilGLg~~~~------ 228 (345)
..|.|.+.|++|+.+.|.+++|+|.|++.. ++++.||+++..++. +. ....+||||||++..
T Consensus 55 ~~~~~~i~Y~~G~~~~G~~~~D~v~ig~~~--------~~~~~fg~~~~~~~~~~~---~~~~dGilGLg~~~~~~~~~~ 123 (278)
T cd06097 55 PGATWSISYGDGSSASGIVYTDTVSIGGVE--------VPNQAIELATAVSASFFS---DTASDGLLGLAFSSINTVQPP 123 (278)
T ss_pred CCcEEEEEeCCCCeEEEEEEEEEEEECCEE--------ECCeEEEEEeecCccccc---cccccceeeeccccccccccC
Confidence 256899999999877999999999999854 458999999987652 32 257899999999643
Q ss_pred ---cHHHHhhhcCCCCCceEEeecCCCCcceEEeCCCCC----CCceEecCCCCCCceEEEEeEEEECCEEeeCCCcccc
Q 019181 229 ---SMISQLASSGGVRKMFAHCLDGINGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFG 301 (345)
Q Consensus 229 ---s~~~ql~~~g~i~~~Fs~~l~~~~~~G~l~~Gg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~ 301 (345)
+++++|.+++. +++||+||.+ ...|+|+|||+|+ +++.|+|+..+..+|.|.+++|+|+++....
T Consensus 124 ~~~~~~~~l~~~~~-~~~Fs~~l~~-~~~G~l~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~~------ 195 (278)
T cd06097 124 KQKTFFENALSSLD-APLFTADLRK-AAPGFYTFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPWS------ 195 (278)
T ss_pred CCCCHHHHHHHhcc-CceEEEEecC-CCCcEEEEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCcceee------
Confidence 57889998865 8999999987 5689999999995 5799999986578999999999999874321
Q ss_pred cCCCccEEEcccccccccChHHHHHHHHHH-Hhhc-----ccccccCC
Q 019181 302 VGDNKGTIIDSGTTLAYLPEMVYEPLVSKV-CDVI-----EYIFWRSS 343 (345)
Q Consensus 302 ~~~~~~~i~DTGts~~~lp~~~~~~i~~~i-~~~~-----~~~~~~~~ 343 (345)
.....++|||||+++++|++++++|++++ ++.. .+.++|+.
T Consensus 196 -~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~~~~~~~~~~~~~C~~ 242 (278)
T cd06097 196 -RSGFSAIADTGTTLILLPDAIVEAYYSQVPGAYYDSEYGGWVFPCDT 242 (278)
T ss_pred -cCCceEEeecCCchhcCCHHHHHHHHHhCcCCcccCCCCEEEEECCC
Confidence 23456999999999999999999999999 3432 25678874
No 12
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=2.5e-40 Score=309.16 Aligned_cols=228 Identities=24% Similarity=0.396 Sum_probs=189.0
Q ss_pred CCCceeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCCcccCCCCCCCC
Q 019181 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPL 149 (345)
Q Consensus 70 ~~~~~~Y~~~i~vGtP~q~~~v~~DTGS~~~wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~ 149 (345)
++.+..|+++|.||||+|+++|+|||||+++||++..|..|. ..|..++.|||++|+|++.
T Consensus 3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~---~~c~~~~~y~~~~SsT~~~---------------- 63 (326)
T cd05487 3 NYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLY---TACVTHNLYDASDSSTYKE---------------- 63 (326)
T ss_pred ccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcc---hhhcccCcCCCCCCeeeeE----------------
Confidence 667899999999999999999999999999999998887542 1234558999999999997
Q ss_pred CCCCCCCCCCCceeeCCCCcEEEEEEEEEEEEecccCCccccccCceeEEeeeeeccC-CCCCCCCCCcceeeecCCCCC
Q 019181 150 TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSG-NLDSTNEEALDGIIGFGKSNS 228 (345)
Q Consensus 150 ~~C~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~~~~GilGLg~~~~ 228 (345)
..|.|.+.|++|+ +.|.+++|+|++++.. + ++.||++..... .+.. ...|||||||++..
T Consensus 64 ------~~~~~~~~Yg~g~-~~G~~~~D~v~~g~~~--------~-~~~fg~~~~~~~~~~~~---~~~dGilGLg~~~~ 124 (326)
T cd05487 64 ------NGTEFTIHYASGT-VKGFLSQDIVTVGGIP--------V-TQMFGEVTALPAIPFML---AKFDGVLGMGYPKQ 124 (326)
T ss_pred ------CCEEEEEEeCCce-EEEEEeeeEEEECCEE--------e-eEEEEEEEeccCCccce---eecceEEecCChhh
Confidence 4578999999998 5999999999998754 2 467999887532 2332 46899999998643
Q ss_pred ------cHHHHhhhcCCC-CCceEEeecCC---CCcceEEeCCCCC----CCceEecCCCCCCceEEEEeEEEECCEEee
Q 019181 229 ------SMISQLASSGGV-RKMFAHCLDGI---NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLN 294 (345)
Q Consensus 229 ------s~~~ql~~~g~i-~~~Fs~~l~~~---~~~G~l~~Gg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~ 294 (345)
+++++|++||.| +++||+||.+. ...|.|+|||+|+ +++.|+|+. ...+|.|.+++++|+++.+.
T Consensus 125 s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~-~~~~w~v~l~~i~vg~~~~~ 203 (326)
T cd05487 125 AIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTS-KTGFWQIQMKGVSVGSSTLL 203 (326)
T ss_pred cccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECC-cCceEEEEecEEEECCEEEe
Confidence 589999999999 79999999874 3479999999996 458899986 56899999999999998764
Q ss_pred CCCcccccCCCccEEEcccccccccChHHHHHHHHHHHhhc---ccccccCC
Q 019181 295 LPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKVCDVI---EYIFWRSS 343 (345)
Q Consensus 295 ~~~~~~~~~~~~~~i~DTGts~~~lp~~~~~~i~~~i~~~~---~~~~~~~~ 343 (345)
.. .+..++|||||+++++|.++++++++++++.. .|.++|+.
T Consensus 204 ~~-------~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~~~~~y~~~C~~ 248 (326)
T cd05487 204 CE-------DGCTAVVDTGASFISGPTSSISKLMEALGAKERLGDYVVKCNE 248 (326)
T ss_pred cC-------CCCEEEECCCccchhCcHHHHHHHHHHhCCcccCCCEEEeccc
Confidence 32 24569999999999999999999999998653 35678875
No 13
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=3.1e-40 Score=308.69 Aligned_cols=228 Identities=27% Similarity=0.371 Sum_probs=189.6
Q ss_pred CCCceeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCCcccCCCCCCCC
Q 019181 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPL 149 (345)
Q Consensus 70 ~~~~~~Y~~~i~vGtP~q~~~v~~DTGS~~~wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~ 149 (345)
++.+..|+++|.||||+|++.|++||||+++||+|..|..|. ..|..++.|||++|+|++.
T Consensus 6 n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~---~~c~~~~~y~~~~Sst~~~---------------- 66 (329)
T cd05485 6 NYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTN---IACLLHNKYDSTKSSTYKK---------------- 66 (329)
T ss_pred eccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCC---ccccCCCeECCcCCCCeEE----------------
Confidence 778899999999999999999999999999999999887432 1233457899999999987
Q ss_pred CCCCCCCCCCCceeeCCCCcEEEEEEEEEEEEecccCCccccccCceeEEeeeeeccCC-CCCCCCCCcceeeecCCCCC
Q 019181 150 TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGN-LDSTNEEALDGIIGFGKSNS 228 (345)
Q Consensus 150 ~~C~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~-~~~~~~~~~~GilGLg~~~~ 228 (345)
..|.|.+.|++|+ +.|.+++|+|++++.. ++++.||++....+. |.. ...+||||||++..
T Consensus 67 ------~~~~~~i~Y~~g~-~~G~~~~D~v~ig~~~--------~~~~~fg~~~~~~~~~~~~---~~~~GilGLg~~~~ 128 (329)
T cd05485 67 ------NGTEFAIQYGSGS-LSGFLSTDTVSVGGVS--------VKGQTFAEAINEPGLTFVA---AKFDGILGMGYSSI 128 (329)
T ss_pred ------CCeEEEEEECCce-EEEEEecCcEEECCEE--------ECCEEEEEEEecCCccccc---cccceEEEcCCccc
Confidence 4578999999998 5999999999999754 458999999876542 322 56899999999764
Q ss_pred c------HHHHhhhcCCC-CCceEEeecCC---CCcceEEeCCCCC----CCceEecCCCCCCceEEEEeEEEECCEEee
Q 019181 229 S------MISQLASSGGV-RKMFAHCLDGI---NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLN 294 (345)
Q Consensus 229 s------~~~ql~~~g~i-~~~Fs~~l~~~---~~~G~l~~Gg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~ 294 (345)
+ ++.+|++||+| +++||+||.+. ...|.|+|||+|+ +++.|+|+. ..++|.|.+++++++++.+.
T Consensus 129 s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~~~v~~~~i~v~~~~~~ 207 (329)
T cd05485 129 SVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVT-RKGYWQFKMDSVSVGEGEFC 207 (329)
T ss_pred cccCCCCHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcC-CceEEEEEeeEEEECCeeec
Confidence 3 68999999999 79999999864 2469999999985 468999986 57899999999999988653
Q ss_pred CCCcccccCCCccEEEcccccccccChHHHHHHHHHHHhhc----ccccccCC
Q 019181 295 LPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKVCDVI----EYIFWRSS 343 (345)
Q Consensus 295 ~~~~~~~~~~~~~~i~DTGts~~~lp~~~~~~i~~~i~~~~----~~~~~~~~ 343 (345)
..+..+||||||+++++|++++++|.+++++.. .|.++|+.
T Consensus 208 --------~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~~~~~~~~~C~~ 252 (329)
T cd05485 208 --------SGGCQAIADTGTSLIAGPVDEIEKLNNAIGAKPIIGGEYMVNCSA 252 (329)
T ss_pred --------CCCcEEEEccCCcceeCCHHHHHHHHHHhCCccccCCcEEEeccc
Confidence 124569999999999999999999999997643 35667764
No 14
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=2.4e-39 Score=311.33 Aligned_cols=225 Identities=21% Similarity=0.307 Sum_probs=181.0
Q ss_pred CCCceeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCCcccCCCCCCCC
Q 019181 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPL 149 (345)
Q Consensus 70 ~~~~~~Y~~~i~vGtP~q~~~v~~DTGS~~~wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~ 149 (345)
++.+..|+++|+||||+|++.|+|||||+++||+|..|..|. |..++.|||++|+|++.
T Consensus 134 n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~-----C~~~~~yd~s~SsT~~~---------------- 192 (453)
T PTZ00147 134 DLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEG-----CETKNLYDSSKSKTYEK---------------- 192 (453)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCccc-----ccCCCccCCccCcceEE----------------
Confidence 677889999999999999999999999999999999997421 22347999999999987
Q ss_pred CCCCCCCCCCCceeeCCCCcEEEEEEEEEEEEecccCCccccccCceeEEeeeeeccCCCCCCCCCCcceeeecCCCCC-
Q 019181 150 TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS- 228 (345)
Q Consensus 150 ~~C~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~- 228 (345)
.++.|.+.|++|+ +.|.+++|+|++++.. ++ ..|+++.+..+.-........|||||||++..
T Consensus 193 ------~~~~f~i~Yg~Gs-vsG~~~~DtVtiG~~~--------v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S 256 (453)
T PTZ00147 193 ------DGTKVEMNYVSGT-VSGFFSKDLVTIGNLS--------VP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLS 256 (453)
T ss_pred ------CCCEEEEEeCCCC-EEEEEEEEEEEECCEE--------EE-EEEEEEEeccCcccccccccccceecccCCccc
Confidence 4568999999998 5999999999999854 33 46888876544100001246899999999754
Q ss_pred -----cHHHHhhhcCCC-CCceEEeecCC-CCcceEEeCCCCC----CCceEecCCCCCCceEEEEeEEEECCEEeeCCC
Q 019181 229 -----SMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPT 297 (345)
Q Consensus 229 -----s~~~ql~~~g~i-~~~Fs~~l~~~-~~~G~l~~Gg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~ 297 (345)
+++.+|++||+| +++||+||++. ...|.|+|||+|+ +++.|+|+. +..+|.|.++ +.+++...
T Consensus 257 ~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~-~~~~W~V~l~-~~vg~~~~---- 330 (453)
T PTZ00147 257 IGSVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLN-HDLYWQVDLD-VHFGNVSS---- 330 (453)
T ss_pred cccCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcC-CCceEEEEEE-EEECCEec----
Confidence 478899999999 78999999864 4579999999995 568999996 5689999998 47765422
Q ss_pred cccccCCCccEEEcccccccccChHHHHHHHHHHHhhc-----ccccccCC
Q 019181 298 DVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKVCDVI-----EYIFWRSS 343 (345)
Q Consensus 298 ~~~~~~~~~~~i~DTGts~~~lp~~~~~~i~~~i~~~~-----~~~~~~~~ 343 (345)
....+||||||+++++|+++++++++++++.. .+.++|+.
T Consensus 331 ------~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~~~~~~~y~~~C~~ 375 (453)
T PTZ00147 331 ------EKANVIVDSGTSVITVPTEFLNKFVESLDVFKVPFLPLYVTTCNN 375 (453)
T ss_pred ------CceeEEECCCCchhcCCHHHHHHHHHHhCCeecCCCCeEEEeCCC
Confidence 24569999999999999999999999997542 24457763
No 15
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1.2e-38 Score=305.88 Aligned_cols=219 Identities=21% Similarity=0.368 Sum_probs=179.0
Q ss_pred CCCceeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCC--CCCCCCCCCccccccCCCCCCCcceecCCCcccCCCCCC
Q 019181 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK--ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGG 147 (345)
Q Consensus 70 ~~~~~~Y~~~i~vGtP~q~~~v~~DTGS~~~wv~~~~C~--~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~ 147 (345)
++.+..|+++|.||||+|++.|+|||||+++||+|..|. .|.. ++.|||++|+|++.
T Consensus 133 d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~-------~~~yd~s~SsT~~~-------------- 191 (450)
T PTZ00013 133 DVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSI-------KNLYDSSKSKSYEK-------------- 191 (450)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCcccccc-------CCCccCccCccccc--------------
Confidence 667889999999999999999999999999999999987 4543 37899999999986
Q ss_pred CCCCCCCCCCCCCceeeCCCCcEEEEEEEEEEEEecccCCccccccCceeEEeeeeeccC---CCCCCCCCCcceeeecC
Q 019181 148 PLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSG---NLDSTNEEALDGIIGFG 224 (345)
Q Consensus 148 ~~~~C~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~---~~~~~~~~~~~GilGLg 224 (345)
.++.|.+.|++|+ +.|.+++|+|++++... + ..|+++.+... .+. ...+|||||||
T Consensus 192 --------~~~~~~i~YG~Gs-v~G~~~~Dtv~iG~~~~--------~-~~f~~~~~~~~~~~~~~---~~~~dGIlGLg 250 (450)
T PTZ00013 192 --------DGTKVDITYGSGT-VKGFFSKDLVTLGHLSM--------P-YKFIEVTDTDDLEPIYS---SSEFDGILGLG 250 (450)
T ss_pred --------CCcEEEEEECCce-EEEEEEEEEEEECCEEE--------c-cEEEEEEecccccccee---cccccceeccc
Confidence 4578999999998 59999999999998642 2 46887766532 122 24689999999
Q ss_pred CCCC------cHHHHhhhcCCC-CCceEEeecCC-CCcceEEeCCCCC----CCceEecCCCCCCceEEEEeEEEECCEE
Q 019181 225 KSNS------SMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDF 292 (345)
Q Consensus 225 ~~~~------s~~~ql~~~g~i-~~~Fs~~l~~~-~~~G~l~~Gg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~~~~ 292 (345)
++.. +++.+|++||+| +++||+||++. ...|.|+|||+|+ +++.|+|+. ...+|.|.++ +.++...
T Consensus 251 ~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~-~~~yW~I~l~-v~~G~~~ 328 (450)
T PTZ00013 251 WKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLN-HDLYWQIDLD-VHFGKQT 328 (450)
T ss_pred CCccccccCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcC-cCceEEEEEE-EEECcee
Confidence 9754 588999999999 78999999864 4579999999996 568999996 5689999998 6666433
Q ss_pred eeCCCcccccCCCccEEEcccccccccChHHHHHHHHHHHhhc-----ccccccC
Q 019181 293 LNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKVCDVI-----EYIFWRS 342 (345)
Q Consensus 293 ~~~~~~~~~~~~~~~~i~DTGts~~~lp~~~~~~i~~~i~~~~-----~~~~~~~ 342 (345)
. ....+|+||||+++++|+++++++++++++.. .+.++|+
T Consensus 329 ~----------~~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~~~~~~~y~~~C~ 373 (450)
T PTZ00013 329 M----------QKANVIVDSGTTTITAPSEFLNKFFANLNVIKVPFLPFYVTTCD 373 (450)
T ss_pred c----------cccceEECCCCccccCCHHHHHHHHHHhCCeecCCCCeEEeecC
Confidence 2 13459999999999999999999999987542 2456675
No 16
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=6.8e-38 Score=296.90 Aligned_cols=218 Identities=24% Similarity=0.290 Sum_probs=173.6
Q ss_pred eeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCCcccCCCCCCCCCCCC
Q 019181 74 GLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCT 153 (345)
Q Consensus 74 ~~Y~~~i~vGtP~q~~~v~~DTGS~~~wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~~~C~ 153 (345)
..|+++|.||||+|+|.|+|||||+++||+|..|..| ++.|||++|+|++.
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~~---------~~~f~~~~SsT~~~-------------------- 52 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPFI---------HTYFHRELSSTYRD-------------------- 52 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCccc---------cccCCchhCcCccc--------------------
Confidence 3699999999999999999999999999999887432 36899999999997
Q ss_pred CCCCCCCceeeCCCCcEEEEEEEEEEEEecccCCccccccCceeEEeeeeeccCCCCCCCCCCcceeeecCCCCC-----
Q 019181 154 ANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS----- 228 (345)
Q Consensus 154 ~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~----- 228 (345)
..|.|.+.|++|+. .|.+++|+|+|++.. ++ ...+.|+++....+.+.. ....|||||||++..
T Consensus 53 --~~~~~~i~Yg~Gs~-~G~~~~D~v~ig~~~--~~----~~~~~~~~~~~~~~~~~~--~~~~dGIlGLg~~~l~~~~~ 121 (364)
T cd05473 53 --LGKGVTVPYTQGSW-EGELGTDLVSIPKGP--NV----TFRANIAAITESENFFLN--GSNWEGILGLAYAELARPDS 121 (364)
T ss_pred --CCceEEEEECcceE-EEEEEEEEEEECCCC--cc----ceEEeeEEEeccccceec--ccccceeeeecccccccCCC
Confidence 45789999999985 999999999998631 11 112345565544433321 135799999998643
Q ss_pred ---cHHHHhhhcCCCCCceEEeecCC----------CCcceEEeCCCCC----CCceEecCCCCCCceEEEEeEEEECCE
Q 019181 229 ---SMISQLASSGGVRKMFAHCLDGI----------NGGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLD 291 (345)
Q Consensus 229 ---s~~~ql~~~g~i~~~Fs~~l~~~----------~~~G~l~~Gg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~~~ 291 (345)
+++++|++|+.++++||+||... ...|.|+|||+|+ +++.|+|++ ...+|.|.+++|+|+++
T Consensus 122 ~~~~~~~~l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~-~~~~~~v~l~~i~vg~~ 200 (364)
T cd05473 122 SVEPFFDSLVKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIR-EEWYYEVIILKLEVGGQ 200 (364)
T ss_pred CCCCHHHHHHhccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecC-cceeEEEEEEEEEECCE
Confidence 58899999999878999988421 2369999999985 468999997 45799999999999999
Q ss_pred EeeCCCcccccCCCccEEEcccccccccChHHHHHHHHHHHhhc
Q 019181 292 FLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKVCDVI 335 (345)
Q Consensus 292 ~~~~~~~~~~~~~~~~~i~DTGts~~~lp~~~~~~i~~~i~~~~ 335 (345)
.+..+...+ ....+||||||++++||++++++|++++++..
T Consensus 201 ~~~~~~~~~---~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~ 241 (364)
T cd05473 201 SLNLDCKEY---NYDKAIVDSGTTNLRLPVKVFNAAVDAIKAAS 241 (364)
T ss_pred ecccccccc---cCccEEEeCCCcceeCCHHHHHHHHHHHHhhc
Confidence 886543322 12359999999999999999999999998864
No 17
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=7.2e-38 Score=289.22 Aligned_cols=194 Identities=35% Similarity=0.625 Sum_probs=164.7
Q ss_pred eEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCCcccCCCCCCCCCCCCC
Q 019181 75 LYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTA 154 (345)
Q Consensus 75 ~Y~~~i~vGtP~q~~~v~~DTGS~~~wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~~~C~~ 154 (345)
+|+++|.||||+|++.|+|||||+++||+|.+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c----------------------------------------------- 33 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC----------------------------------------------- 33 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC-----------------------------------------------
Confidence 599999999999999999999999999987544
Q ss_pred CCCCCCceeeCCCCcEEEEEEEEEEEEecccCCccccccCceeEEeeeeeccCCCCCCCCCCcceeeecCCCCCcHHHHh
Q 019181 155 NTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQL 234 (345)
Q Consensus 155 ~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~s~~~ql 234 (345)
|.|.+.|++|+.++|.+++|+|+|++.. .++++.|||+...++.+ ...+||||||++..+++.|+
T Consensus 34 ---~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~-------~~~~~~Fg~~~~~~~~~-----~~~~GilGLg~~~~s~~~ql 98 (299)
T cd05472 34 ---CLYQVSYGDGSYTTGDLATDTLTLGSSD-------VVPGFAFGCGHDNEGLF-----GGAAGLLGLGRGKLSLPSQT 98 (299)
T ss_pred ---CeeeeEeCCCceEEEEEEEEEEEeCCCC-------ccCCEEEECCccCCCcc-----CCCCEEEECCCCcchHHHHh
Confidence 2579999999977999999999998751 25689999999876643 25799999999999999998
Q ss_pred hhcCCCCCceEEeecCC--CCcceEEeCCCCC--CCceEecCCCCC---CceEEEEeEEEECCEEeeCCCcccccCCCcc
Q 019181 235 ASSGGVRKMFAHCLDGI--NGGGIFAIGHVVQ--PEVNKTPLVPNQ---PHYSINMTAVQVGLDFLNLPTDVFGVGDNKG 307 (345)
Q Consensus 235 ~~~g~i~~~Fs~~l~~~--~~~G~l~~Gg~d~--~~~~~~p~~~~~---~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~ 307 (345)
..+ .+++||+||.+. ..+|+|+||++|+ +++.|+|++.++ .+|.|++++|+|+++.+..+... .....
T Consensus 99 ~~~--~~~~FS~~L~~~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~---~~~~~ 173 (299)
T cd05472 99 ASS--YGGVFSYCLPDRSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPAS---FGAGG 173 (299)
T ss_pred hHh--hcCceEEEccCCCCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccc---cCCCC
Confidence 764 468999999864 4579999999997 689999998653 68999999999999987654221 23457
Q ss_pred EEEcccccccccChHHHHHHHHHHHhhc
Q 019181 308 TIIDSGTTLAYLPEMVYEPLVSKVCDVI 335 (345)
Q Consensus 308 ~i~DTGts~~~lp~~~~~~i~~~i~~~~ 335 (345)
++|||||++++||+++|++|.+++.++.
T Consensus 174 ~ivDSGTt~~~lp~~~~~~l~~~l~~~~ 201 (299)
T cd05472 174 VIIDSGTVITRLPPSAYAALRDAFRAAM 201 (299)
T ss_pred eEEeCCCcceecCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999998764
No 18
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=1.4e-37 Score=284.40 Aligned_cols=218 Identities=33% Similarity=0.615 Sum_probs=183.8
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCCcccCCCCCCCCCCCCCC
Q 019181 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTAN 155 (345)
Q Consensus 76 Y~~~i~vGtP~q~~~v~~DTGS~~~wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~~~C~~~ 155 (345)
|+++|.||||+|++.|+|||||+++||+|..|..|..+.. ....|++..|+++..
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~---~~~~~~~~~s~~~~~---------------------- 55 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKH---PRFKYDSSKSSTYKD---------------------- 55 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccC---CCCccCccCCceeec----------------------
Confidence 7899999999999999999999999999999998764432 001267777776654
Q ss_pred CCCCCceeeCCCCcEEEEEEEEEEEEecccCCccccccCceeEEeeeeeccCCCCCCCCCCcceeeecCCCC------Cc
Q 019181 156 TSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSN------SS 229 (345)
Q Consensus 156 ~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~------~s 229 (345)
..|.+.+.|++|+. .|.+++|+|+|++.. ++++.|||++.....+.. ...+||||||+.. .+
T Consensus 56 ~~~~~~~~Y~~g~~-~g~~~~D~v~~~~~~--------~~~~~fg~~~~~~~~~~~---~~~~GilGLg~~~~~~~~~~s 123 (283)
T cd05471 56 TGCTFSITYGDGSV-TGGLGTDTVTIGGLT--------IPNQTFGCATSESGDFSS---SGFDGILGLGFPSLSVDGVPS 123 (283)
T ss_pred CCCEEEEEECCCeE-EEEEEEeEEEECCEE--------EeceEEEEEeccCCcccc---cccceEeecCCcccccccCCC
Confidence 57889999999874 999999999999864 458999999988753333 6789999999988 78
Q ss_pred HHHHhhhcCCC-CCceEEeecCC---CCcceEEeCCCCC----CCceEecCCCC-CCceEEEEeEEEECCEEeeCCCccc
Q 019181 230 MISQLASSGGV-RKMFAHCLDGI---NGGGIFAIGHVVQ----PEVNKTPLVPN-QPHYSINMTAVQVGLDFLNLPTDVF 300 (345)
Q Consensus 230 ~~~ql~~~g~i-~~~Fs~~l~~~---~~~G~l~~Gg~d~----~~~~~~p~~~~-~~~w~v~l~~i~v~~~~~~~~~~~~ 300 (345)
+++||.+++.| +++||+||.+. ...|.|+||++|+ +++.|+|++.. ..+|.|.+++|.|+++...
T Consensus 124 ~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~------ 197 (283)
T cd05471 124 FFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVI------ 197 (283)
T ss_pred HHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceee------
Confidence 99999999999 89999999984 4789999999996 57999999865 7899999999999987411
Q ss_pred ccCCCccEEEcccccccccChHHHHHHHHHHHhhcc
Q 019181 301 GVGDNKGTIIDSGTTLAYLPEMVYEPLVSKVCDVIE 336 (345)
Q Consensus 301 ~~~~~~~~i~DTGts~~~lp~~~~~~i~~~i~~~~~ 336 (345)
.......++|||||++++||.+++++|++++.+...
T Consensus 198 ~~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~ 233 (283)
T cd05471 198 SSSGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVS 233 (283)
T ss_pred ecCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCccc
Confidence 113356799999999999999999999999998764
No 19
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1.1e-36 Score=277.66 Aligned_cols=191 Identities=36% Similarity=0.726 Sum_probs=157.3
Q ss_pred eeEEEEEEeCCCCceEEEEEEcCCCeeeEeCC-CCCCCCCCCCCCccccccCCCCCCCcceecCCCcccCCCCCCCCCCC
Q 019181 74 GLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCI-QCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDC 152 (345)
Q Consensus 74 ~~Y~~~i~vGtP~q~~~v~~DTGS~~~wv~~~-~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~~~C 152 (345)
++|+++|.||||+|++.|+|||||+++||+|. .|..|
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c------------------------------------------ 38 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC------------------------------------------ 38 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC------------------------------------------
Confidence 47999999999999999999999999999883 55444
Q ss_pred CCCCCCCCceeeCCCCcEEEEEEEEEEEEecccCCccccccCceeEEeeeeeccCCCCCCCCCCcceeeecCCCCCcHHH
Q 019181 153 TANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMIS 232 (345)
Q Consensus 153 ~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~s~~~ 232 (345)
.|.|.+.|+|++.+.|.+++|+|+++..... ..++++.|||+....+.+.. .....|||||||+...|+++
T Consensus 39 ----~c~~~i~Ygd~~~~~G~~~~D~v~~~~~~~~----~~~~~~~Fgc~~~~~~~~~~-~~~~~dGIlGLg~~~~s~~~ 109 (273)
T cd05475 39 ----QCDYEIEYADGGSSMGVLVTDIFSLKLTNGS----RAKPRIAFGCGYDQQGPLLN-PPPPTDGILGLGRGKISLPS 109 (273)
T ss_pred ----cCccEeEeCCCCceEEEEEEEEEEEeecCCC----cccCCEEEEeeeccCCcccC-CCccCCEEEECCCCCCCHHH
Confidence 2568999998877899999999999764322 23568999999876553321 12568999999999999999
Q ss_pred HhhhcCCCCCceEEeecCCCCcceEEeCCCC--CCCceEecCCCC--CCceEEEEeEEEECCEEeeCCCcccccCCCccE
Q 019181 233 QLASSGGVRKMFAHCLDGINGGGIFAIGHVV--QPEVNKTPLVPN--QPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGT 308 (345)
Q Consensus 233 ql~~~g~i~~~Fs~~l~~~~~~G~l~~Gg~d--~~~~~~~p~~~~--~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~ 308 (345)
||.++++|+++||+||++ ..+|.|+||+.. .+.+.|+|+..+ ..+|.|++.+|+|+++.+. .....+
T Consensus 110 ql~~~~~i~~~Fs~~l~~-~~~g~l~~G~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~--------~~~~~~ 180 (273)
T cd05475 110 QLASQGIIKNVIGHCLSS-NGGGFLFFGDDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTG--------GKGLEV 180 (273)
T ss_pred HHHhcCCcCceEEEEccC-CCCeEEEECCCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECc--------CCCceE
Confidence 999999998899999987 557899999653 256999999865 4799999999999998532 234569
Q ss_pred EEcccccccccChHHH
Q 019181 309 IIDSGTTLAYLPEMVY 324 (345)
Q Consensus 309 i~DTGts~~~lp~~~~ 324 (345)
||||||+++++|+++|
T Consensus 181 ivDTGTt~t~lp~~~y 196 (273)
T cd05475 181 VFDSGSSYTYFNAQAY 196 (273)
T ss_pred EEECCCceEEcCCccc
Confidence 9999999999999877
No 20
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.6e-36 Score=285.99 Aligned_cols=232 Identities=23% Similarity=0.317 Sum_probs=184.1
Q ss_pred eCCCCce-EEEEEEcCCCeeeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCCcccCCCCCCC---------CCC
Q 019181 82 IGTPPKD-YYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGP---------LTD 151 (345)
Q Consensus 82 vGtP~q~-~~v~~DTGS~~~wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~---------~~~ 151 (345)
.|||-.+ +.|++||||+++||+|.+ .+|+||+.++|+++.|....+.. ...
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~-------------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~ 62 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA-------------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPG 62 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC-------------------CCcCCCCccCcCChhhccccccCCCccccCCCCCC
Confidence 5788777 999999999999999853 46789999999999998766432 235
Q ss_pred CCCCCCCCCcee-eCCCCcEEEEEEEEEEEEecccCCccccccCceeEEeeeeeccCCCCCCCCCCcceeeecCCCCCcH
Q 019181 152 CTANTSCPYLEI-YGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSM 230 (345)
Q Consensus 152 C~~~~~~~~~~~-Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~s~ 230 (345)
|.. +.|.|... |++|+...|.+++|+|+|+...........++++.|||+.+...... ....|||||||++..|+
T Consensus 63 c~~-~~C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~---~~~~dGIlGLg~~~lSl 138 (362)
T cd05489 63 CGN-NTCTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGL---PPGAQGVAGLGRSPLSL 138 (362)
T ss_pred CCC-CcCeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCC---ccccccccccCCCccch
Confidence 633 45888655 77897789999999999986543321112467999999987532111 13589999999999999
Q ss_pred HHHhhhcCCCCCceEEeecCC-CCcceEEeCCCCC----------CCceEecCCCC---CCceEEEEeEEEECCEEeeCC
Q 019181 231 ISQLASSGGVRKMFAHCLDGI-NGGGIFAIGHVVQ----------PEVNKTPLVPN---QPHYSINMTAVQVGLDFLNLP 296 (345)
Q Consensus 231 ~~ql~~~g~i~~~Fs~~l~~~-~~~G~l~~Gg~d~----------~~~~~~p~~~~---~~~w~v~l~~i~v~~~~~~~~ 296 (345)
+.||..++.++++||+||.+. ..+|.|+||+.+. +.++|+||+.+ ..+|.|+|++|+||++.+.++
T Consensus 139 ~sql~~~~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~ 218 (362)
T cd05489 139 PAQLASAFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLN 218 (362)
T ss_pred HHHhhhhcCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCC
Confidence 999998776678999999874 4579999999874 56899999865 379999999999999998776
Q ss_pred Ccccc--cCCCccEEEcccccccccChHHHHHHHHHHHhhcc
Q 019181 297 TDVFG--VGDNKGTIIDSGTTLAYLPEMVYEPLVSKVCDVIE 336 (345)
Q Consensus 297 ~~~~~--~~~~~~~i~DTGts~~~lp~~~~~~i~~~i~~~~~ 336 (345)
...+. ..+...+||||||++++||+++|++|.+++.++..
T Consensus 219 ~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~ 260 (362)
T cd05489 219 PTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATA 260 (362)
T ss_pred chhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhc
Confidence 55433 23456799999999999999999999999987653
No 21
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=1.8e-35 Score=268.47 Aligned_cols=184 Identities=40% Similarity=0.744 Sum_probs=157.2
Q ss_pred eEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCCcccCCCCCCCCCCCCC
Q 019181 75 LYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTA 154 (345)
Q Consensus 75 ~Y~~~i~vGtP~q~~~v~~DTGS~~~wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~~~C~~ 154 (345)
+|+++|+||||+|++.|+|||||+++||+| |
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-----~-------------------------------------------- 31 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-----C-------------------------------------------- 31 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC-----C--------------------------------------------
Confidence 599999999999999999999999999975 1
Q ss_pred CCCCCCceeeCCCCcEEEEEEEEEEEEecccCCccccccCceeEEeeeeeccCCCCCCCCCCcceeeecCCCCCcHHHHh
Q 019181 155 NTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQL 234 (345)
Q Consensus 155 ~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~s~~~ql 234 (345)
.|.+.|+||+.+.|.+++|+|.|++.. ..++++.|||+...++ +.. ...+||||||+...|++.||
T Consensus 32 ----~~~~~Y~dg~~~~G~~~~D~v~~g~~~------~~~~~~~Fg~~~~~~~-~~~---~~~~GIlGLg~~~~s~~~ql 97 (265)
T cd05476 32 ----SYEYSYGDGSSTSGVLATETFTFGDSS------VSVPNVAFGCGTDNEG-GSF---GGADGILGLGRGPLSLVSQL 97 (265)
T ss_pred ----ceEeEeCCCceeeeeEEEEEEEecCCC------CccCCEEEEecccccC-Ccc---CCCCEEEECCCCcccHHHHh
Confidence 468899998888999999999999862 1256899999998876 433 67899999999999999999
Q ss_pred hhcCCCCCceEEeecCC---CCcceEEeCCCCC---CCceEecCCCC---CCceEEEEeEEEECCEEeeCCCcccc--cC
Q 019181 235 ASSGGVRKMFAHCLDGI---NGGGIFAIGHVVQ---PEVNKTPLVPN---QPHYSINMTAVQVGLDFLNLPTDVFG--VG 303 (345)
Q Consensus 235 ~~~g~i~~~Fs~~l~~~---~~~G~l~~Gg~d~---~~~~~~p~~~~---~~~w~v~l~~i~v~~~~~~~~~~~~~--~~ 303 (345)
..++ ++||+||.+. ...|+|+||++|+ +++.|+|++.+ ..+|.+++++|+|+++.+.++...+. ..
T Consensus 98 ~~~~---~~Fs~~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~ 174 (265)
T cd05476 98 GSTG---NKFSYCLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSD 174 (265)
T ss_pred hccc---CeeEEEccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccC
Confidence 9887 8999999873 5589999999997 78999999865 57999999999999998865433221 23
Q ss_pred CCccEEEcccccccccChHHH
Q 019181 304 DNKGTIIDSGTTLAYLPEMVY 324 (345)
Q Consensus 304 ~~~~~i~DTGts~~~lp~~~~ 324 (345)
....+|+||||++++||++++
T Consensus 175 ~~~~ai~DTGTs~~~lp~~~~ 195 (265)
T cd05476 175 GSGGTIIDSGTTLTYLPDPAY 195 (265)
T ss_pred CCCcEEEeCCCcceEcCcccc
Confidence 466799999999999999987
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=1.7e-35 Score=275.14 Aligned_cols=223 Identities=27% Similarity=0.501 Sum_probs=182.9
Q ss_pred eEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCCcccCCCCCCCCCCCCC
Q 019181 75 LYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTA 154 (345)
Q Consensus 75 ~Y~~~i~vGtP~q~~~v~~DTGS~~~wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~~~C~~ 154 (345)
+|+++|.||||+|+++|++||||+++||++..|..|. .|.....|++.+|+|++..
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~----~~~~~~~y~~~~S~t~~~~-------------------- 56 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCS----SCASSGFYNPSKSSTFSNQ-------------------- 56 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHT----HHCTSC-BBGGGSTTEEEE--------------------
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceecccccc----ccccccccccccccccccc--------------------
Confidence 5999999999999999999999999999999998761 1123379999999999874
Q ss_pred CCCCCCceeeCCCCcEEEEEEEEEEEEecccCCccccccCceeEEeeeeeccCC-CCCCCCCCcceeeecCCC-------
Q 019181 155 NTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGN-LDSTNEEALDGIIGFGKS------- 226 (345)
Q Consensus 155 ~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~-~~~~~~~~~~GilGLg~~------- 226 (345)
.+.+.+.|++|+ +.|.+++|+|.|++.. +.++.||++....+. +. ....+||||||++
T Consensus 57 --~~~~~~~y~~g~-~~G~~~~D~v~ig~~~--------~~~~~f~~~~~~~~~~~~---~~~~~GilGLg~~~~~~~~~ 122 (317)
T PF00026_consen 57 --GKPFSISYGDGS-VSGNLVSDTVSIGGLT--------IPNQTFGLADSYSGDPFS---PIPFDGILGLGFPSLSSSST 122 (317)
T ss_dssp --EEEEEEEETTEE-EEEEEEEEEEEETTEE--------EEEEEEEEEEEEESHHHH---HSSSSEEEE-SSGGGSGGGT
T ss_pred --eeeeeeeccCcc-cccccccceEeeeecc--------ccccceeccccccccccc---cccccccccccCCccccccc
Confidence 356899999999 7999999999999865 447999999985432 21 2568999999974
Q ss_pred CCcHHHHhhhcCCC-CCceEEeecCCC-CcceEEeCCCCC----CCceEecCCCCCCceEEEEeEEEECCEEeeCCCccc
Q 019181 227 NSSMISQLASSGGV-RKMFAHCLDGIN-GGGIFAIGHVVQ----PEVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVF 300 (345)
Q Consensus 227 ~~s~~~ql~~~g~i-~~~Fs~~l~~~~-~~G~l~~Gg~d~----~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~~~~ 300 (345)
..+++++|+++|+| +++||++|.+.. ..|.|+|||+|+ +++.|+|+. ...+|.+.+++|.+++.....
T Consensus 123 ~~~~~~~l~~~g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~-~~~~w~v~~~~i~i~~~~~~~----- 196 (317)
T PF00026_consen 123 YPTFLDQLVQQGLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLV-SSGYWSVPLDSISIGGESVFS----- 196 (317)
T ss_dssp S-SHHHHHHHTTSSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBS-STTTTEEEEEEEEETTEEEEE-----
T ss_pred CCcceecchhhccccccccceeeeecccccchheeeccccccccCceeccCcc-ccccccccccccccccccccc-----
Confidence 35799999999999 799999999863 579999999986 458999997 778999999999999883221
Q ss_pred ccCCCccEEEcccccccccChHHHHHHHHHHHhhcc---cccccCC
Q 019181 301 GVGDNKGTIIDSGTTLAYLPEMVYEPLVSKVCDVIE---YIFWRSS 343 (345)
Q Consensus 301 ~~~~~~~~i~DTGts~~~lp~~~~~~i~~~i~~~~~---~~~~~~~ 343 (345)
.....++||||++++++|.+++++|++++++... +.++|+.
T Consensus 197 --~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~~~~~~~c~~ 240 (317)
T PF00026_consen 197 --SSGQQAILDTGTSYIYLPRSIFDAIIKALGGSYSDGVYSVPCNS 240 (317)
T ss_dssp --EEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEEECSEEEEETTG
T ss_pred --ccceeeecccccccccccchhhHHHHhhhcccccceeEEEeccc
Confidence 1224499999999999999999999999998754 5566664
No 23
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=4.7e-34 Score=263.17 Aligned_cols=193 Identities=25% Similarity=0.464 Sum_probs=163.7
Q ss_pred eEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCCcccCCCCCCCCCCCCC
Q 019181 75 LYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTA 154 (345)
Q Consensus 75 ~Y~~~i~vGtP~q~~~v~~DTGS~~~wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~~~C~~ 154 (345)
.|+++|.||||+|++.|+|||||+++||+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~--------------------------------------------------- 30 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP--------------------------------------------------- 30 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee---------------------------------------------------
Confidence 69999999999999999999999999996
Q ss_pred CCCCCCceeeCCCCcEEEEEEEEEEEEecccCCccccccCceeEEeeeeeccCCCCCCCCCCcceeeecCCCCC------
Q 019181 155 NTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS------ 228 (345)
Q Consensus 155 ~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~------ 228 (345)
.|.+.|++|+.+.|.+++|+|++++.. ++++.|||+++. ...+||||||+...
T Consensus 31 ----~~~~~Y~~g~~~~G~~~~D~v~~g~~~--------~~~~~fg~~~~~---------~~~~GilGLg~~~~~~~~~~ 89 (295)
T cd05474 31 ----DFSISYGDGTSASGTWGTDTVSIGGAT--------VKNLQFAVANST---------SSDVGVLGIGLPGNEATYGT 89 (295)
T ss_pred ----eeEEEeccCCcEEEEEEEEEEEECCeE--------ecceEEEEEecC---------CCCcceeeECCCCCcccccC
Confidence 158899997777999999999999864 458999999974 23689999999775
Q ss_pred -----cHHHHhhhcCCC-CCceEEeecCC-CCcceEEeCCCCC----CCceEecCCCCC-----CceEEEEeEEEECCEE
Q 019181 229 -----SMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQ----PEVNKTPLVPNQ-----PHYSINMTAVQVGLDF 292 (345)
Q Consensus 229 -----s~~~ql~~~g~i-~~~Fs~~l~~~-~~~G~l~~Gg~d~----~~~~~~p~~~~~-----~~w~v~l~~i~v~~~~ 292 (345)
+|++||+++|+| +++||+||.+. ...|.|+|||+|+ +++.|+|+..+. .+|.|.+++|+++++.
T Consensus 90 ~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~ 169 (295)
T cd05474 90 GYTYPNFPIALKKQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSS 169 (295)
T ss_pred CCcCCCHHHHHHHCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCC
Confidence 699999999999 79999999985 4579999999986 458999998653 6899999999999887
Q ss_pred eeCCCcccccCCCccEEEcccccccccChHHHHHHHHHHHhhcc-----cccccCC
Q 019181 293 LNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKVCDVIE-----YIFWRSS 343 (345)
Q Consensus 293 ~~~~~~~~~~~~~~~~i~DTGts~~~lp~~~~~~i~~~i~~~~~-----~~~~~~~ 343 (345)
+..+. ......++|||||++++||.+++++|++++++... +.++|+.
T Consensus 170 ~~~~~----~~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~~~~~~~~~C~~ 221 (295)
T cd05474 170 GNTTL----LSKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYDSDEGLYVVDCDA 221 (295)
T ss_pred Ccccc----cCCCccEEECCCCccEeCCHHHHHHHHHHhCCEEcCCCcEEEEeCCC
Confidence 64321 13456799999999999999999999999987643 5566654
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.97 E-value=2.8e-31 Score=223.28 Aligned_cols=162 Identities=38% Similarity=0.727 Sum_probs=132.4
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCCcccCCCCCCCCCCCCCC
Q 019181 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTAN 155 (345)
Q Consensus 76 Y~~~i~vGtP~q~~~v~~DTGS~~~wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~~~C~~~ 155 (345)
|+++|.||||+|++.|+|||||+++|++|.. +.|+|++|+||+.++|+++.|...++.....|..+
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C~~--------------~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~ 66 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQCPD--------------PPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSN 66 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET------------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCES
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcCCC--------------cccCCccCCcccccCCCCcchhhcccccccCCCCc
Confidence 8999999999999999999999999999811 79999999999999999999998876634444557
Q ss_pred CCCCCceeeCCCCcEEEEEEEEEEEEecccCCccccccCceeEEeeeeeccCCCCCCCCCCcceeeecCCCCCcHHHHhh
Q 019181 156 TSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLA 235 (345)
Q Consensus 156 ~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~~~~s~~~ql~ 235 (345)
..|.|.+.|++++.+.|.+++|+|+++....+. ..+.++.|||+....+.+ ...+||||||+.+.||+.||.
T Consensus 67 ~~C~y~~~y~~~s~~~G~l~~D~~~~~~~~~~~---~~~~~~~FGC~~~~~g~~-----~~~~GilGLg~~~~Sl~sQl~ 138 (164)
T PF14543_consen 67 NSCPYSQSYGDGSSSSGFLASDTLTFGSSSGGS---NSVPDFIFGCATSNSGLF-----YGADGILGLGRGPLSLPSQLA 138 (164)
T ss_dssp SEEEEEEEETTTEEEEEEEEEEEEEEEEESSSS---EEEEEEEEEEE-GGGTSS-----TTEEEEEE-SSSTTSHHHHHH
T ss_pred CcccceeecCCCccccCceEEEEEEecCCCCCC---ceeeeEEEEeeeccccCC-----cCCCcccccCCCcccHHHHHH
Confidence 899999999999999999999999999875432 346699999999988644 368999999999999999998
Q ss_pred hcCCCCCceEEeecC--CCCcceEEeCC
Q 019181 236 SSGGVRKMFAHCLDG--INGGGIFAIGH 261 (345)
Q Consensus 236 ~~g~i~~~Fs~~l~~--~~~~G~l~~Gg 261 (345)
++ ..++||+||.+ ....|.|+||+
T Consensus 139 ~~--~~~~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 139 SS--SGNKFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp HH----SEEEEEB-S-SSSSEEEEEECS
T ss_pred Hh--cCCeEEEECCCCCCCCCEEEEeCc
Confidence 87 66899999998 36789999996
No 25
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.89 E-value=5.6e-23 Score=161.17 Aligned_cols=108 Identities=34% Similarity=0.608 Sum_probs=90.2
Q ss_pred EEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCcccccc-CCCCCCCcceecCCCcccCCCCCCCCCCCCCCC
Q 019181 78 AKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLY-DIKDSSTGKFVTCDQEFCHGVYGGPLTDCTANT 156 (345)
Q Consensus 78 ~~i~vGtP~q~~~v~~DTGS~~~wv~~~~C~~C~~~~~~~~~~~~y-~p~~Sst~~~~~c~~~~C~~~~~~~~~~C~~~~ 156 (345)
++|.||||+|++.|+|||||+++||+|..|..|..+. ++.| +|++|++++. .
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~-----~~~~~~~~~sst~~~----------------------~ 53 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYS-----HSSYDDPSASSTYSD----------------------N 53 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCccccc-----ccccCCcCCCCCCCC----------------------C
Confidence 4799999999999999999999999999998775432 2456 9999999886 4
Q ss_pred CCCCceeeCCCCcEEEEEEEEEEEEecccCCccccccCceeEEeeeeeccCCCCCCCCCCcceeeec
Q 019181 157 SCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGF 223 (345)
Q Consensus 157 ~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGL 223 (345)
.|.|.+.|++|+. .|.+++|+|+|++.. ++++.|||+....+.+.. ....+|||||
T Consensus 54 ~~~~~~~Y~~g~~-~g~~~~D~v~ig~~~--------~~~~~fg~~~~~~~~~~~--~~~~~GilGL 109 (109)
T cd05470 54 GCTFSITYGTGSL-SGGLSTDTVSIGDIE--------VVGQAFGCATDEPGATFL--PALFDGILGL 109 (109)
T ss_pred CcEEEEEeCCCeE-EEEEEEEEEEECCEE--------ECCEEEEEEEecCCcccc--ccccccccCC
Confidence 6789999999975 899999999998754 458999999988765321 2568999998
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=98.59 E-value=1.3e-07 Score=79.24 Aligned_cols=60 Identities=42% Similarity=0.669 Sum_probs=49.0
Q ss_pred ceEEEEeEEEECCEEeeCCCccccc-CCCccEEEcccccccccChHHHHHHHHHHHhhccc
Q 019181 278 HYSINMTAVQVGLDFLNLPTDVFGV-GDNKGTIIDSGTTLAYLPEMVYEPLVSKVCDVIEY 337 (345)
Q Consensus 278 ~w~v~l~~i~v~~~~~~~~~~~~~~-~~~~~~i~DTGts~~~lp~~~~~~i~~~i~~~~~~ 337 (345)
+|.|++.+|+||++.+.++...|.. ++...++|||||++++||+++|+++.++|.+....
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~ 61 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGA 61 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHT
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhh
Confidence 5999999999999999998887642 34677999999999999999999999999987653
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.99 E-value=1.8e-05 Score=59.60 Aligned_cols=93 Identities=12% Similarity=0.073 Sum_probs=61.4
Q ss_pred eEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCCcccCCCCCCCCCCCCC
Q 019181 75 LYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTA 154 (345)
Q Consensus 75 ~Y~~~i~vGtP~q~~~v~~DTGS~~~wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~~~C~~ 154 (345)
.|++++.|+ ++++.+++|||++.+|+.......+. . + ..
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~----------~--~-----~~---------------------- 40 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLG----------L--P-----LT---------------------- 40 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcC----------C--C-----cc----------------------
Confidence 589999999 89999999999999999764221111 0 0 00
Q ss_pred CCCCCCceeeCCCCcEEEEEEEEEEEEecccCCccccccCceeEEeeeeeccCCCCCCCCCCcceeeecCC
Q 019181 155 NTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGK 225 (345)
Q Consensus 155 ~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GilGLg~ 225 (345)
......+...+|.........+.+++++... .++.+....... ...+||||+.+
T Consensus 41 -~~~~~~~~~~~G~~~~~~~~~~~i~ig~~~~--------~~~~~~v~d~~~--------~~~~gIlG~d~ 94 (96)
T cd05483 41 -LGGKVTVQTANGRVRAARVRLDSLQIGGITL--------RNVPAVVLPGDA--------LGVDGLLGMDF 94 (96)
T ss_pred -CCCcEEEEecCCCccceEEEcceEEECCcEE--------eccEEEEeCCcc--------cCCceEeChHH
Confidence 1223466677777656666688899988642 355555544332 13689999864
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=96.40 E-value=0.014 Score=46.32 Aligned_cols=31 Identities=29% Similarity=0.408 Sum_probs=27.8
Q ss_pred CceeEEEEEEeCCCCceEEEEEEcCCCeeeEeC
Q 019181 72 GVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNC 104 (345)
Q Consensus 72 ~~~~Y~~~i~vGtP~q~~~v~~DTGS~~~wv~~ 104 (345)
.++.|++++.|. ++++.++||||++.+-++.
T Consensus 8 ~~g~~~v~~~In--G~~~~flVDTGAs~t~is~ 38 (121)
T TIGR02281 8 GDGHFYATGRVN--GRNVRFLVDTGATSVALNE 38 (121)
T ss_pred CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCH
Confidence 578899999998 8899999999999998765
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.02 E-value=0.036 Score=40.79 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=21.6
Q ss_pred EEEEeCCCCceEEEEEEcCCCeeeEeCC
Q 019181 78 AKIGIGTPPKDYYVQVDTGSDIMWVNCI 105 (345)
Q Consensus 78 ~~i~vGtP~q~~~v~~DTGS~~~wv~~~ 105 (345)
+++.|+ ++++.+++|||++.+.+...
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~ 26 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRS 26 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHH
Confidence 467788 89999999999998887653
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=94.44 E-value=0.3 Score=38.71 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=29.1
Q ss_pred CceeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCC
Q 019181 72 GVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQC 107 (345)
Q Consensus 72 ~~~~Y~~~i~vGtP~q~~~v~~DTGS~~~wv~~~~C 107 (345)
....+++++.|+ ++++.+++|||++..++....+
T Consensus 13 ~~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a 46 (124)
T cd05479 13 KVPMLYINVEIN--GVPVKAFVDSGAQMTIMSKACA 46 (124)
T ss_pred eeeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHH
Confidence 456789999999 8999999999999999866443
No 31
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=93.60 E-value=0.089 Score=39.19 Aligned_cols=29 Identities=24% Similarity=0.196 Sum_probs=25.8
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCeeeEeCCC
Q 019181 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQ 106 (345)
Q Consensus 76 Y~~~i~vGtP~q~~~v~~DTGS~~~wv~~~~ 106 (345)
|++++.|+ ++++.+++||||+..++....
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~ 29 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKT 29 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHH
Confidence 57899999 999999999999999997643
No 32
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=92.92 E-value=0.63 Score=39.86 Aligned_cols=77 Identities=17% Similarity=0.120 Sum_probs=54.5
Q ss_pred CCCceeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCCCCCCCCCccccccCCCCCCCcceecCCCcccCCCCCCCC
Q 019181 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPL 149 (345)
Q Consensus 70 ~~~~~~Y~~~i~vGtP~q~~~v~~DTGS~~~wv~~~~C~~C~~~~~~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~~ 149 (345)
...+|.|.++..|- +|++++++|||-+.+-++..+... --||...
T Consensus 100 k~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~R-----------lGid~~~---------------------- 144 (215)
T COG3577 100 KSRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDARR-----------LGIDLNS---------------------- 144 (215)
T ss_pred ecCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHHH-----------hCCCccc----------------------
Confidence 35788999999999 999999999999988886544211 1233322
Q ss_pred CCCCCCCCCCCceeeCCCCcEEEEEEEEEEEEecccCC
Q 019181 150 TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGD 187 (345)
Q Consensus 150 ~~C~~~~~~~~~~~Y~~g~~~~G~~~~D~v~i~~~~~~ 187 (345)
.+.++.+.-+.|......+--|.|.||+....
T Consensus 145 ------l~y~~~v~TANG~~~AA~V~Ld~v~IG~I~~~ 176 (215)
T COG3577 145 ------LDYTITVSTANGRARAAPVTLDRVQIGGIRVK 176 (215)
T ss_pred ------cCCceEEEccCCccccceEEeeeEEEccEEEc
Confidence 12344556677886566788899999986543
No 33
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=91.91 E-value=2.5 Score=39.59 Aligned_cols=58 Identities=19% Similarity=0.288 Sum_probs=33.7
Q ss_pred eeCCCCcEEEEEEEEEEEEecccCCccccccCceeEEeeeeec--------cC-CCCCCCCCCcceeeecCCC
Q 019181 163 IYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQ--------SG-NLDSTNEEALDGIIGFGKS 226 (345)
Q Consensus 163 ~Y~~g~~~~G~~~~D~v~i~~~~~~~~~~~~~~~~~fg~~~~~--------~~-~~~~~~~~~~~GilGLg~~ 226 (345)
.|++|.. -|.+.+-.|.|++..... ++-|.++-.... .+ ..........+||||+|.-
T Consensus 83 ~F~sgyt-WGsVr~AdV~igge~A~~-----iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~ 149 (370)
T PF11925_consen 83 QFASGYT-WGSVRTADVTIGGETASS-----IPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPF 149 (370)
T ss_pred hccCccc-ccceEEEEEEEcCeeccc-----cCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCC
Confidence 5667664 688899999999875432 333444321100 01 0111234678999999984
No 34
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=90.53 E-value=0.46 Score=33.70 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=30.2
Q ss_pred CceeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCC
Q 019181 72 GVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK 108 (345)
Q Consensus 72 ~~~~Y~~~i~vGtP~q~~~v~~DTGS~~~wv~~~~C~ 108 (345)
..+.+++++.|| ++.+.+++|||++...|+...+.
T Consensus 5 ~~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a~ 39 (72)
T PF13975_consen 5 DPGLMYVPVSIG--GVQVKALVDTGATHNFISESLAK 39 (72)
T ss_pred cCCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHHH
Confidence 467899999999 89999999999999988765543
No 35
>PF13650 Asp_protease_2: Aspartyl protease
Probab=89.70 E-value=0.47 Score=34.60 Aligned_cols=29 Identities=21% Similarity=0.367 Sum_probs=24.3
Q ss_pred EEECCEEeeCCCcccccCCCccEEEcccccccccChHHHHHH
Q 019181 286 VQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (345)
Q Consensus 286 i~v~~~~~~~~~~~~~~~~~~~~i~DTGts~~~lp~~~~~~i 327 (345)
++|+|+.+. +++|||++.+.+++++++++
T Consensus 3 v~vng~~~~-------------~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPVR-------------FLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEEE-------------EEEcCCCCcEEECHHHHHHc
Confidence 567777654 89999999999999988776
No 36
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=88.77 E-value=0.59 Score=34.69 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=26.4
Q ss_pred EEEECCEEeeCCCcccccCCCccEEEcccccccccChHHHHHHH
Q 019181 285 AVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLV 328 (345)
Q Consensus 285 ~i~v~~~~~~~~~~~~~~~~~~~~i~DTGts~~~lp~~~~~~i~ 328 (345)
.+.|+|+.+. +.+|||++.+.++.+.+.++-
T Consensus 4 ~~~Ing~~i~-------------~lvDTGA~~svis~~~~~~lg 34 (91)
T cd05484 4 TLLVNGKPLK-------------FQLDTGSAITVISEKTWRKLG 34 (91)
T ss_pred EEEECCEEEE-------------EEEcCCcceEEeCHHHHHHhC
Confidence 4678888775 899999999999999988764
No 37
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=87.53 E-value=1 Score=31.88 Aligned_cols=30 Identities=23% Similarity=0.455 Sum_probs=25.4
Q ss_pred EEEECCEEeeCCCcccccCCCccEEEcccccccccChHHHHHH
Q 019181 285 AVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (345)
Q Consensus 285 ~i~v~~~~~~~~~~~~~~~~~~~~i~DTGts~~~lp~~~~~~i 327 (345)
.+.|+|..+. +++|||++-.+++.+..+.+
T Consensus 12 ~~~I~g~~~~-------------alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 12 PVSIGGVQVK-------------ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEECCEEEE-------------EEEeCCCcceecCHHHHHHh
Confidence 3567777664 89999999999999988887
No 38
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=87.25 E-value=0.89 Score=34.21 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=24.3
Q ss_pred EEEEEeCCCCceEEEEEEcCCCeeeEeCCC
Q 019181 77 YAKIGIGTPPKDYYVQVDTGSDIMWVNCIQ 106 (345)
Q Consensus 77 ~~~i~vGtP~q~~~v~~DTGS~~~wv~~~~ 106 (345)
+++|.+. ++++.+++||||+.+-|+...
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceecccc
Confidence 6788888 899999999999999987643
No 39
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=87.19 E-value=0.84 Score=36.04 Aligned_cols=36 Identities=22% Similarity=0.227 Sum_probs=28.0
Q ss_pred CCceEEEEeEEEECCEEeeCCCcccccCCCccEEEcccccccccChHHHHHH
Q 019181 276 QPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (345)
Q Consensus 276 ~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~i~DTGts~~~lp~~~~~~i 327 (345)
.++|.+. +.|||+.+. ++||||++.+.++.++.+++
T Consensus 9 ~g~~~v~---~~InG~~~~-------------flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNVR-------------FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCEEEE-------------EEEECCCCcEEcCHHHHHHc
Confidence 3566543 567887654 89999999999999988776
No 40
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=85.86 E-value=1.4 Score=32.38 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=24.4
Q ss_pred EEEECCEEeeCCCcccccCCCccEEEcccccccccChHHHHHH
Q 019181 285 AVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (345)
Q Consensus 285 ~i~v~~~~~~~~~~~~~~~~~~~~i~DTGts~~~lp~~~~~~i 327 (345)
.+.|+++.+. +++|||++.++++.+..+.+
T Consensus 6 ~v~i~~~~~~-------------~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPVR-------------FLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEEE-------------EEEECCCCcEEcCHHHHHHc
Confidence 4667777664 89999999999999887765
No 41
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=84.78 E-value=1.2 Score=32.77 Aligned_cols=29 Identities=17% Similarity=0.101 Sum_probs=25.0
Q ss_pred EEECCEEeeCCCcccccCCCccEEEcccccccccChHHHHHH
Q 019181 286 VQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (345)
Q Consensus 286 i~v~~~~~~~~~~~~~~~~~~~~i~DTGts~~~lp~~~~~~i 327 (345)
+.|||+.+. +++|||.+.+.++.+..+.+
T Consensus 3 v~InG~~~~-------------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV-------------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE-------------EEEECCCCeEEECHHHhhhc
Confidence 567888765 89999999999999988875
No 42
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=80.39 E-value=2.3 Score=33.58 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=23.8
Q ss_pred EEECCEEeeCCCcccccCCCccEEEcccccccccChHHHHHH
Q 019181 286 VQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (345)
Q Consensus 286 i~v~~~~~~~~~~~~~~~~~~~~i~DTGts~~~lp~~~~~~i 327 (345)
++|+|+.+. +++|||++.+.++.+..+++
T Consensus 21 ~~Ing~~~~-------------~LvDTGAs~s~Is~~~a~~l 49 (124)
T cd05479 21 VEINGVPVK-------------AFVDSGAQMTIMSKACAEKC 49 (124)
T ss_pred EEECCEEEE-------------EEEeCCCceEEeCHHHHHHc
Confidence 556777654 89999999999999988874
No 43
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=78.97 E-value=1.7 Score=32.68 Aligned_cols=29 Identities=14% Similarity=0.397 Sum_probs=23.2
Q ss_pred eEEEECCEEeeCCCcccccCCCccEEEcccccccccChHHHH
Q 019181 284 TAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYE 325 (345)
Q Consensus 284 ~~i~v~~~~~~~~~~~~~~~~~~~~i~DTGts~~~lp~~~~~ 325 (345)
..|.++|+.+. ++||||+..+.++.+.+.
T Consensus 8 i~v~i~g~~i~-------------~LlDTGA~vsiI~~~~~~ 36 (100)
T PF00077_consen 8 ITVKINGKKIK-------------ALLDTGADVSIISEKDWK 36 (100)
T ss_dssp EEEEETTEEEE-------------EEEETTBSSEEESSGGSS
T ss_pred EEEeECCEEEE-------------EEEecCCCcceecccccc
Confidence 34677888765 999999999999987653
No 44
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=78.92 E-value=2.7 Score=30.83 Aligned_cols=26 Identities=19% Similarity=0.097 Sum_probs=21.7
Q ss_pred EEEeCCCCceEEEEEEcCCCeeeEeCCC
Q 019181 79 KIGIGTPPKDYYVQVDTGSDIMWVNCIQ 106 (345)
Q Consensus 79 ~i~vGtP~q~~~v~~DTGS~~~wv~~~~ 106 (345)
.+.|. ++++.+++|||++.+-+....
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~ 27 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDL 27 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHH
Confidence 45666 899999999999999997644
No 45
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=76.17 E-value=3.7 Score=30.39 Aligned_cols=25 Identities=24% Similarity=0.225 Sum_probs=21.4
Q ss_pred EEEeCCCCceEEEEEEcCCCeeeEeCC
Q 019181 79 KIGIGTPPKDYYVQVDTGSDIMWVNCI 105 (345)
Q Consensus 79 ~i~vGtP~q~~~v~~DTGS~~~wv~~~ 105 (345)
.+.++ +|.+.+++|||.+++-+...
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 46777 89999999999999998753
No 46
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=73.75 E-value=3.6 Score=30.73 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=19.5
Q ss_pred EEEcccccccccChHHHHHHH
Q 019181 308 TIIDSGTTLAYLPEMVYEPLV 328 (345)
Q Consensus 308 ~i~DTGts~~~lp~~~~~~i~ 328 (345)
+.+|||++...+|...++.+.
T Consensus 13 ~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 13 FQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEecCCEEEeccHHHHhhhc
Confidence 899999999999999988875
No 47
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=72.23 E-value=8.4 Score=33.16 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=29.7
Q ss_pred CCCceEEEEeEEEECCEEeeCCCcccccCCCccEEEcccccccccChHHHHHH
Q 019181 275 NQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (345)
Q Consensus 275 ~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~~i~DTGts~~~lp~~~~~~i 327 (345)
.++||.+ ...|||+.+. .++|||.|.+.++++..+.+
T Consensus 102 ~~GHF~a---~~~VNGk~v~-------------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 102 RDGHFEA---NGRVNGKKVD-------------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCCcEEE---EEEECCEEEE-------------EEEecCcceeecCHHHHHHh
Confidence 3567764 4678999886 89999999999999977664
No 48
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=67.44 E-value=6.8 Score=31.05 Aligned_cols=30 Identities=10% Similarity=0.159 Sum_probs=23.9
Q ss_pred EEEECCEEeeCCCcccccCCCccEEEcccccccccChHHHHHH
Q 019181 285 AVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (345)
Q Consensus 285 ~i~v~~~~~~~~~~~~~~~~~~~~i~DTGts~~~lp~~~~~~i 327 (345)
.+++||+.+. |++|||+..+.++.+..+++
T Consensus 28 ~~~ing~~vk-------------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPVK-------------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEEE-------------EEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEEE-------------EEEeCCCCccccCHHHHHHc
Confidence 4678888875 99999999999999988873
No 49
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=57.58 E-value=8.7 Score=29.04 Aligned_cols=18 Identities=17% Similarity=0.547 Sum_probs=15.2
Q ss_pred cEEEcccccccccChHHH
Q 019181 307 GTIIDSGTTLAYLPEMVY 324 (345)
Q Consensus 307 ~~i~DTGts~~~lp~~~~ 324 (345)
.++||||++.++++.+-.
T Consensus 13 ~~~~DTGSs~~Wv~~~~c 30 (109)
T cd05470 13 NVLLDTGSSNLWVPSVDC 30 (109)
T ss_pred EEEEeCCCCCEEEeCCCC
Confidence 389999999999987643
No 50
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=54.33 E-value=8.6 Score=29.50 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=18.1
Q ss_pred cEEEcccccccc-cChHHHHHH
Q 019181 307 GTIIDSGTTLAY-LPEMVYEPL 327 (345)
Q Consensus 307 ~~i~DTGts~~~-lp~~~~~~i 327 (345)
.+++|||.+... +|.++++++
T Consensus 18 ~~LVDTGat~~~~l~~~~a~~l 39 (107)
T TIGR03698 18 RALVDTGFSGFLLVPPDIVNKL 39 (107)
T ss_pred EEEEECCCCeEEecCHHHHHHc
Confidence 489999999886 999988874
No 51
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=53.79 E-value=19 Score=29.99 Aligned_cols=30 Identities=13% Similarity=0.111 Sum_probs=22.6
Q ss_pred eeEEEEEEeCCCCceEEEEEEcCCCeeeEeCC
Q 019181 74 GLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCI 105 (345)
Q Consensus 74 ~~Y~~~i~vGtP~q~~~v~~DTGS~~~wv~~~ 105 (345)
.-+.+++.+- +.+++++|||||+.-+|...
T Consensus 33 ~T~~v~l~~~--~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 33 KTAIVQLNCK--GTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred cEEEEEEeec--CcEEEEEEeCCCccceeehh
Confidence 3455555554 89999999999998888653
No 52
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=49.92 E-value=10 Score=29.79 Aligned_cols=21 Identities=43% Similarity=0.517 Sum_probs=18.6
Q ss_pred EEEccccc-ccccChHHHHHHH
Q 019181 308 TIIDSGTT-LAYLPEMVYEPLV 328 (345)
Q Consensus 308 ~i~DTGts-~~~lp~~~~~~i~ 328 (345)
.++|||-+ ++.+|.++++++-
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~~ 50 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKLG 50 (125)
T ss_pred eEEecCCceeEEeCHHHHHhcC
Confidence 58999999 9999999998763
No 53
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=49.64 E-value=30 Score=27.40 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=24.9
Q ss_pred ceeEEEEEEeCCCCceEEEEEEcCCCeeeEeCCCCCCC
Q 019181 73 VGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKEC 110 (345)
Q Consensus 73 ~~~Y~~~i~vGtP~q~~~v~~DTGS~~~wv~~~~C~~C 110 (345)
....|++++|+ +++++..+|||...+-+...-+..|
T Consensus 22 v~mLyI~~~in--g~~vkA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 22 VSMLYINCKIN--GVPVKAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp ----EEEEEET--TEEEEEEEETT-SS-EEEHHHHHHT
T ss_pred cceEEEEEEEC--CEEEEEEEeCCCCccccCHHHHHHc
Confidence 45689999999 9999999999999888865433344
No 54
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=45.14 E-value=18 Score=26.88 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=18.5
Q ss_pred EEeCCCC-ceEEEEEEcCCCeeeEeC
Q 019181 80 IGIGTPP-KDYYVQVDTGSDIMWVNC 104 (345)
Q Consensus 80 i~vGtP~-q~~~v~~DTGS~~~wv~~ 104 (345)
+.+. + +++++.+|||++..-++-
T Consensus 3 ~~i~--g~~~v~~~vDtGA~vnllp~ 26 (93)
T cd05481 3 MKIN--GKQSVKFQLDTGATCNVLPL 26 (93)
T ss_pred eEeC--CceeEEEEEecCCEEEeccH
Confidence 4455 5 899999999999887764
No 55
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=42.54 E-value=57 Score=26.12 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=16.7
Q ss_pred EEEcccccccccChHHHHH
Q 019181 308 TIIDSGTTLAYLPEMVYEP 326 (345)
Q Consensus 308 ~i~DTGts~~~lp~~~~~~ 326 (345)
++||||++-.++..+...+
T Consensus 35 vLiDSGAThsFIs~~~a~~ 53 (135)
T PF08284_consen 35 VLIDSGATHSFISSSFAKK 53 (135)
T ss_pred EEEecCCCcEEccHHHHHh
Confidence 8999999999998887665
No 56
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=39.97 E-value=49 Score=27.55 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=19.2
Q ss_pred cEEEcccccccccChHHHHHHHH
Q 019181 307 GTIIDSGTTLAYLPEMVYEPLVS 329 (345)
Q Consensus 307 ~~i~DTGts~~~lp~~~~~~i~~ 329 (345)
.+++|||++....-.++.+.|--
T Consensus 47 ~vLfDSGSPTSfIr~di~~kL~L 69 (177)
T PF12384_consen 47 KVLFDSGSPTSFIRSDIVEKLEL 69 (177)
T ss_pred EEEEeCCCccceeehhhHHhhCC
Confidence 49999999999998888777643
No 57
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=38.04 E-value=45 Score=25.49 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=20.4
Q ss_pred EEEEEeCCCCc----eEEEEEEcCCCeee-EeC
Q 019181 77 YAKIGIGTPPK----DYYVQVDTGSDIMW-VNC 104 (345)
Q Consensus 77 ~~~i~vGtP~q----~~~v~~DTGS~~~w-v~~ 104 (345)
++++.|..|.| ++.+++|||.+..- ++.
T Consensus 1 ~~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~ 33 (107)
T TIGR03698 1 TLDVELSNPKNPEFMEVRALVDTGFSGFLLVPP 33 (107)
T ss_pred CEEEEEeCCCCCCceEEEEEEECCCCeEEecCH
Confidence 36788888732 68999999998664 543
No 58
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=37.67 E-value=59 Score=21.94 Aligned_cols=20 Identities=25% Similarity=0.639 Sum_probs=17.5
Q ss_pred EEEcccccccccChHHHHHH
Q 019181 308 TIIDSGTTLAYLPEMVYEPL 327 (345)
Q Consensus 308 ~i~DTGts~~~lp~~~~~~i 327 (345)
+++|||++...+..+.++..
T Consensus 12 ~liDtgs~~~~~~~~~~~~~ 31 (92)
T cd00303 12 ALVDSGASVNFISESLAKKL 31 (92)
T ss_pred EEEcCCCcccccCHHHHHHc
Confidence 89999999999999887654
No 59
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=36.59 E-value=38 Score=24.96 Aligned_cols=25 Identities=12% Similarity=0.352 Sum_probs=19.2
Q ss_pred EEECCEEeeCCCcccccCCCccEEEcccccccccChHH
Q 019181 286 VQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMV 323 (345)
Q Consensus 286 i~v~~~~~~~~~~~~~~~~~~~~i~DTGts~~~lp~~~ 323 (345)
++++|+.+. +++|||+-.+.++...
T Consensus 3 ~~i~g~~~~-------------~llDTGAd~Tvi~~~~ 27 (87)
T cd05482 3 LYINGKLFE-------------GLLDTGADVSIIAEND 27 (87)
T ss_pred EEECCEEEE-------------EEEccCCCCeEEcccc
Confidence 556666664 8999999999887643
No 60
>PLN03146 aspartyl protease family protein; Provisional
Probab=33.82 E-value=42 Score=32.66 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=13.3
Q ss_pred cEEEcccccccccCh
Q 019181 307 GTIIDSGTTLAYLPE 321 (345)
Q Consensus 307 ~~i~DTGts~~~lp~ 321 (345)
.+++|||+.++|+|-
T Consensus 99 ~vi~DTGS~l~Wv~C 113 (431)
T PLN03146 99 LAIADTGSDLIWTQC 113 (431)
T ss_pred EEEECCCCCcceEcC
Confidence 389999999999974
No 61
>cd05480 NRIP_C NRIP_C; putative nuclear receptor interacting protein. Proteins in this family have been described as probable nuclear receptor interacting proteins. The C-terminal domain of this family is homologous to the retroviral aspartyl protease domain. The domain is structurally related to one lobe of the pepsin molecule. The conserved active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=30.71 E-value=70 Score=24.33 Aligned_cols=28 Identities=14% Similarity=0.270 Sum_probs=23.0
Q ss_pred EEECCEEeeCCCcccccCCCccEEEcccccccccChHHHHH
Q 019181 286 VQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEP 326 (345)
Q Consensus 286 i~v~~~~~~~~~~~~~~~~~~~~i~DTGts~~~lp~~~~~~ 326 (345)
-++||..+. |.+|||+-.+.+...-.++
T Consensus 3 Ck~nG~~vk-------------AfVDsGaQ~timS~~caer 30 (103)
T cd05480 3 CQCAGKELR-------------ALVDTGCQYNLISAACLDR 30 (103)
T ss_pred eeECCEEEE-------------EEEecCCchhhcCHHHHHH
Confidence 356777665 9999999999999988776
No 62
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=30.55 E-value=47 Score=24.08 Aligned_cols=20 Identities=20% Similarity=0.105 Sum_probs=7.8
Q ss_pred cchhHHHHHHHHHHHhhccc
Q 019181 4 CLRNCLCIVLIATAAVGGVS 23 (345)
Q Consensus 4 ~~~~~l~~~l~~~~~~~~~~ 23 (345)
.+|+.++-+|.+.+.++.++
T Consensus 2 aRRlwiLslLAVtLtVALAA 21 (100)
T PF05984_consen 2 ARRLWILSLLAVTLTVALAA 21 (100)
T ss_pred chhhHHHHHHHHHHHHHhhc
Confidence 34444433333333443343
No 63
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=30.43 E-value=73 Score=28.60 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=23.1
Q ss_pred eeEEEE---EEeCC---CCceEEEEEEcCCCeeeEeCC
Q 019181 74 GLYYAK---IGIGT---PPKDYYVQVDTGSDIMWVNCI 105 (345)
Q Consensus 74 ~~Y~~~---i~vGt---P~q~~~v~~DTGS~~~wv~~~ 105 (345)
..|.++ |.||. +.....+++|||++.+.+|..
T Consensus 157 ~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 157 KHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 466655 68873 223457999999999999863
No 64
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=26.02 E-value=68 Score=29.54 Aligned_cols=16 Identities=25% Similarity=0.567 Sum_probs=14.3
Q ss_pred EEEcccccccccChHH
Q 019181 308 TIIDSGTTLAYLPEMV 323 (345)
Q Consensus 308 ~i~DTGts~~~lp~~~ 323 (345)
+++|||++.+++|..-
T Consensus 26 v~~DTGSs~lWv~~~~ 41 (317)
T cd06098 26 VIFDTGSSNLWVPSSK 41 (317)
T ss_pred EEECCCccceEEecCC
Confidence 9999999999999753
No 65
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=24.91 E-value=1.1e+02 Score=24.53 Aligned_cols=30 Identities=13% Similarity=0.174 Sum_probs=25.0
Q ss_pred ceeEEEEEEeCCCCceEEEEEEcCCCeeeEeC
Q 019181 73 VGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNC 104 (345)
Q Consensus 73 ~~~Y~~~i~vGtP~q~~~v~~DTGS~~~wv~~ 104 (345)
...-.+.+.|. .++..+++|+|++.-+|..
T Consensus 19 ~~vi~g~~~I~--~~~~~vLiDSGAThsFIs~ 48 (135)
T PF08284_consen 19 PDVITGTFLIN--SIPASVLIDSGATHSFISS 48 (135)
T ss_pred CCeEEEEEEec--cEEEEEEEecCCCcEEccH
Confidence 34567888888 7999999999999988865
No 66
>PTZ00165 aspartyl protease; Provisional
Probab=23.83 E-value=47 Score=32.94 Aligned_cols=17 Identities=18% Similarity=0.522 Sum_probs=15.1
Q ss_pred EEEcccccccccChHHH
Q 019181 308 TIIDSGTTLAYLPEMVY 324 (345)
Q Consensus 308 ~i~DTGts~~~lp~~~~ 324 (345)
+++|||++.+++|....
T Consensus 136 Vv~DTGSS~lWVps~~C 152 (482)
T PTZ00165 136 VVFDTGSSNLWIPSKEC 152 (482)
T ss_pred EEEeCCCCCEEEEchhc
Confidence 99999999999998644
No 67
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=23.06 E-value=1.4e+02 Score=18.07 Aligned_cols=11 Identities=36% Similarity=0.603 Sum_probs=4.3
Q ss_pred HHHHHHHHHHh
Q 019181 9 LCIVLIATAAV 19 (345)
Q Consensus 9 l~~~l~~~~~~ 19 (345)
+.+.+++++++
T Consensus 8 ~~l~lLal~~a 18 (36)
T PF08194_consen 8 FALLLLALAAA 18 (36)
T ss_pred HHHHHHHHHhc
Confidence 33444443333
No 68
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=22.93 E-value=88 Score=28.75 Aligned_cols=15 Identities=27% Similarity=0.709 Sum_probs=13.7
Q ss_pred EEEcccccccccChH
Q 019181 308 TIIDSGTTLAYLPEM 322 (345)
Q Consensus 308 ~i~DTGts~~~lp~~ 322 (345)
+++|||++.+++|..
T Consensus 26 v~~DTGS~~~wv~~~ 40 (317)
T cd05478 26 VIFDTGSSNLWVPSV 40 (317)
T ss_pred EEEeCCCccEEEecC
Confidence 999999999999854
No 69
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=22.07 E-value=1e+02 Score=27.50 Aligned_cols=18 Identities=11% Similarity=0.176 Sum_probs=14.9
Q ss_pred eEEEEEEcCCCeeeEeCC
Q 019181 88 DYYVQVDTGSDIMWVNCI 105 (345)
Q Consensus 88 ~~~v~~DTGS~~~wv~~~ 105 (345)
...+++|||++.+.+|..
T Consensus 176 ~~~ai~DTGTs~~~lp~~ 193 (265)
T cd05476 176 SGGTIIDSGTTLTYLPDP 193 (265)
T ss_pred CCcEEEeCCCcceEcCcc
Confidence 356899999999999763
No 70
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=21.19 E-value=58 Score=24.13 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=19.1
Q ss_pred CCccEEEcccccccccChHHHHH
Q 019181 304 DNKGTIIDSGTTLAYLPEMVYEP 326 (345)
Q Consensus 304 ~~~~~i~DTGts~~~lp~~~~~~ 326 (345)
.+...++|||+....+|....+.
T Consensus 8 s~~~fLVDTGA~vSviP~~~~~~ 30 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASSTKK 30 (89)
T ss_pred CCcEEEEeCCCceEeeccccccc
Confidence 34558999999999999987665
No 71
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=21.17 E-value=1.1e+02 Score=29.04 Aligned_cols=16 Identities=13% Similarity=-0.097 Sum_probs=14.0
Q ss_pred EEEEEcCCCeeeEeCC
Q 019181 90 YVQVDTGSDIMWVNCI 105 (345)
Q Consensus 90 ~v~~DTGS~~~wv~~~ 105 (345)
.++||||++.+.++..
T Consensus 231 g~iiDSGTs~t~lp~~ 246 (362)
T cd05489 231 GVKLSTVVPYTVLRSD 246 (362)
T ss_pred cEEEecCCceEEECHH
Confidence 5999999999999763
No 72
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=20.98 E-value=92 Score=27.61 Aligned_cols=35 Identities=17% Similarity=0.330 Sum_probs=25.6
Q ss_pred ceeEEEE---EEeCC-----CCceEEEEEEcCCCeeeEeCCCC
Q 019181 73 VGLYYAK---IGIGT-----PPKDYYVQVDTGSDIMWVNCIQC 107 (345)
Q Consensus 73 ~~~Y~~~---i~vGt-----P~q~~~v~~DTGS~~~wv~~~~C 107 (345)
...|.+. |.||. ......++||||++.+++|...+
T Consensus 179 ~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~ 221 (283)
T cd05471 179 PGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVY 221 (283)
T ss_pred CCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHH
Confidence 4556654 56774 24567999999999999987543
No 73
>PTZ00147 plasmepsin-1; Provisional
Probab=20.60 E-value=64 Score=31.67 Aligned_cols=16 Identities=25% Similarity=0.584 Sum_probs=14.3
Q ss_pred EEEcccccccccChHH
Q 019181 308 TIIDSGTTLAYLPEMV 323 (345)
Q Consensus 308 ~i~DTGts~~~lp~~~ 323 (345)
+++|||++.+++|..-
T Consensus 155 Vi~DTGSsdlWVps~~ 170 (453)
T PTZ00147 155 FIFDTGSANLWVPSIK 170 (453)
T ss_pred EEEeCCCCcEEEeecC
Confidence 9999999999999653
Done!