BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 019185
(345 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis
thaliana GN=VTE2-1 PE=2 SV=1
Length = 393
Score = 215 bits (548), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 114/283 (40%), Positives = 166/283 (58%), Gaps = 28/283 (9%)
Query: 90 SATKSQNENIVSTSFLDFLTKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTF 149
+AT Q E S S LDAFYR SRP+ ++ ILS S L ++ ++D++P
Sbjct: 75 NATAGQPEAFDSNSKQKSFRDSLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLL 134
Query: 150 LIEVLKPIVPTIMMNIFVVAINQLSDIAIDK----------------------------S 181
+L+ +V +MMNI++V +NQLSD+ IDK S
Sbjct: 135 FTGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMS 194
Query: 182 LAMGVMLRSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFL 241
+G ++ S PL AL + +LG AYSI+LPLLRWK L+AA+ I+ I + ++L
Sbjct: 195 FWLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYL 254
Query: 242 HVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERV 301
H+Q +V GRP++FT+PL+FA AF + FS+V++L KDIPD+EGDK GIR+ V LG++RV
Sbjct: 255 HIQTHVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRV 314
Query: 302 LSMSTGILLMAYASAALAGVFSPILLCKLVTMIGHSVLGFILW 344
+L MAYA A L G SP + K+++++GH +L LW
Sbjct: 315 FWTCVTLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLW 357
>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza
sativa subsp. japonica GN=HPT1 PE=2 SV=1
Length = 404
Score = 212 bits (540), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 129/356 (36%), Positives = 188/356 (52%), Gaps = 38/356 (10%)
Query: 17 PLQQNGTVKTFQSPLTQIYGLANRRESNKYSVKGSIQSSFCLTNNKIGNNEDMMNRYHKP 76
PL+++ F PL I+ N + S + + SF G H+P
Sbjct: 23 PLRRD----HFLPPLCSIH--RNGKRPVSLSSQRTQGPSFDQCQKFFGWKSSHHRIPHRP 76
Query: 77 LKKSTVPMALQDDSATKSQNENIVSTSFLDFLTKKLDAFYRLSRPYAWTSIIVGILSSSL 136
S A +S E S+S ++ LDAFYR SRP+ + I+S SL
Sbjct: 77 TSSS----ADASGQPLQSSAEAHDSSSIWKPISSSLDAFYRFSRPHTVIGTALSIVSVSL 132
Query: 137 LPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK---------------- 180
L +++L+D++P FL +L+ +V + MNI++V +NQL DI IDK
Sbjct: 133 LAVENLSDVSPLFLTGLLEAVVAALFMNIYIVGLNQLFDIEIDKVNKPTLPLASGEYSPA 192
Query: 181 ------------SLAMGVMLRSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIV 228
S +G + S PL +AL + ILG AYSI+LP LRWK S ++AA+ I+
Sbjct: 193 TGVALVSAFAAMSFGLGWAVGSQPLFLALFISFILGTAYSINLPFLRWKRSAVVAALCIL 252
Query: 229 IGNGINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSG 288
+ L +FLH+Q +V RP VFT+PL+FA AF FS+V++L KDIPD+EGD+ G
Sbjct: 253 AVRAVIVQLAFFLHIQTFVFRRPAVFTRPLIFATAFMTFFSVVIALFKDIPDIEGDRIFG 312
Query: 289 IRTLPVILGKERVLSMSTGILLMAYASAALAGVFSPILLCKLVTMIGHSVLGFILW 344
I++ V LG+++V + G+L MAY A L G S L K T++GH++L ILW
Sbjct: 313 IKSFSVRLGQKKVFWICVGLLEMAYCVAILMGATSACLWSKYATVVGHAILAAILW 368
>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora
flavescens GN=N8DT-1 PE=1 SV=1
Length = 410
Score = 192 bits (489), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/270 (37%), Positives = 156/270 (57%), Gaps = 28/270 (10%)
Query: 103 SFLDFLTKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIM 162
S D + LD FY+ RPYA +I++G SL+ ++ L+DL+ F I L+ +V I
Sbjct: 105 SIWDSVNDALDIFYKFCRPYAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVIC 164
Query: 163 MNIFVVAINQLSDIAIDK------------------------SLAMGV----MLRSPPLV 194
++IF V +NQL DI IDK SL +G+ ++ S PL
Sbjct: 165 IHIFGVGLNQLCDIEIDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDSWPLF 224
Query: 195 IALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLHVQKYVLGRPVVF 254
+ + C++ +AY++DLPLLRWK P++ A+ + + L +FLH+Q V RP F
Sbjct: 225 WTVFISCMVASAYNVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTTF 284
Query: 255 TKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYA 314
+PL+F A +I++IV++L KDIPD+EGD+K GI++L + LG +RV + +L M Y
Sbjct: 285 PRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMTYG 344
Query: 315 SAALAGVFSPILLCKLVTMIGHSVLGFILW 344
L G SPIL K++T++GH+VL +LW
Sbjct: 345 VTILVGATSPILWSKIITVLGHAVLASVLW 374
>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1
SV=1
Length = 409
Score = 165 bits (417), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 108/309 (34%), Positives = 156/309 (50%), Gaps = 36/309 (11%)
Query: 64 GNNEDMMNRYHKPLKKSTVPMALQDDSATKSQNENIVSTSFLDFLTKKLDAFYRLSRPYA 123
G+ NR S P+ + A S +NI LD + L AFY S PY
Sbjct: 73 GSTYQECNRKFVVKAISKQPLGFE---AHASNPKNI-----LDSVKNVLSAFYWFSYPYT 124
Query: 124 WTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK--- 180
I + SSSLL ++ L+D++ +FLI VL+ ++P + + I++ +NQL D+ IDK
Sbjct: 125 MIGITLCAFSSSLLAVEKLSDISLSFLIGVLQGVLPQLFIEIYLCGVNQLYDLEIDKINK 184
Query: 181 ----------SLAMGVMLR---------------SPPLVIALVLRCILGAAYSIDLPLLR 215
S GV++ S PL+ LV+ AYSID+PLLR
Sbjct: 185 PHLPMASGQFSFKTGVIISAAFLALSFGFTWITGSWPLICNLVVIASSWTAYSIDVPLLR 244
Query: 216 WKASPLMAAVAIVIGNGINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLL 275
WK P +AA+ ++ + + YF H+Q VL RP+ F + L F VAF +S+ L+L
Sbjct: 245 WKRYPFVAAMCMISTWALALPISYFHHMQTVVLKRPIGFPRSLGFLVAFMTFYSLGLALS 304
Query: 276 KDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAGVFSPILLCKLVTMIG 335
KDIPDVEGDK+ GI + V LG++R + MA+ LAG K+ T +G
Sbjct: 305 KDIPDVEGDKEHGIDSFAVRLGQKRAFWICVSFFEMAFGVGILAGASCSHFWTKIFTGMG 364
Query: 336 HSVLGFILW 344
++VL ILW
Sbjct: 365 NAVLASILW 373
>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis
thaliana GN=HPT2 PE=2 SV=1
Length = 386
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 125/269 (46%), Gaps = 40/269 (14%)
Query: 105 LDFLTKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTP----TFLIEVLKPIVPT 160
LD + + +A +R RP+ +I L S+ L ++L + T + +++ L ++
Sbjct: 84 LDRIARFQNACWRFLRPH---TIRGTALGSTALVTRALIENTHLIKWSLVLKALSGLLAL 140
Query: 161 IMMNIFVVAINQLSDIAIDK------SLAMG---------------------VMLRSPPL 193
I N ++V INQ+ DI IDK +A G V P
Sbjct: 141 ICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAIAGLLVVGFNFGPF 200
Query: 194 VIALV-LRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNG-INNVLPYFLHVQKYVLGRP 251
+ +L L LG YS+ P LR K P+ A + I G + N Y H + LG P
Sbjct: 201 ITSLYSLGLFLGTIYSV--PPLRMKRFPVAAFLIIATVRGFLLNFGVY--HATRAALGLP 256
Query: 252 VVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLM 311
++ P+ F +F +F++V+++ KD+PDVEGD+K I TL LG + + +G+LL+
Sbjct: 257 FQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLGSGLLLV 316
Query: 312 AYASAALAGVFSPILLCKLVTMIGHSVLG 340
Y SA + P + + + H +L
Sbjct: 317 NYVSAISLAFYMPQVFRGSLMIPAHVILA 345
>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza
sativa subsp. japonica GN=HPT2 PE=3 SV=2
Length = 379
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/260 (26%), Positives = 113/260 (43%), Gaps = 38/260 (14%)
Query: 113 DAFYRLSRPYAWTSIIVG---ILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVA 169
D+ +R RP+ +G +++ +L+ L + F + +V I N ++V
Sbjct: 85 DSCWRFLRPHTIRGTALGSIALVARALIENPQLINWWLVF--KAFYGLVALICGNGYIVG 142
Query: 170 INQLSDIAIDK------SLAMG---------------------VMLRSPPLVIAL-VLRC 201
INQ+ DI IDK +A G V+ P + +L L
Sbjct: 143 INQIYDIRIDKVNKPYLPIAAGDLSVQTAWLLVVLFAAAGFSIVVTNFGPFITSLYCLGL 202
Query: 202 ILGAAYSIDLPLLRWKASPLMAAVAIVIGNG-INNVLPYFLHVQKYVLGRPVVFTKPLLF 260
LG YS+ P R K P+ A + I G + N Y + + LG ++ P+ F
Sbjct: 203 FLGTIYSV--PPFRLKRYPVAAFLIIATVRGFLLNFGVY--YATRAALGLTFQWSSPVAF 258
Query: 261 AVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAG 320
F +F++V+++ KD+PDVEGD+K I TL LG + + +G+L+ Y +A
Sbjct: 259 ITCFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIAFLGSGLLIANYVAAIAVA 318
Query: 321 VFSPILLCKLVTMIGHSVLG 340
P + V + H+ L
Sbjct: 319 FLMPQAFRRTVMVPVHAALA 338
>sp|Q18J00|DGGGP_HALWD Digeranylgeranylglyceryl phosphate synthase OS=Haloquadratum
walsbyi (strain DSM 16790) GN=HQ_1884A PE=3 SV=1
Length = 286
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 51/86 (59%), Gaps = 7/86 (8%)
Query: 232 GINNVLPYFLHVQKYV-----LGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKK 286
G+ N + +L ++ +GR F +LF +A A+ + ++KDI D++GD+K
Sbjct: 135 GVGNAIVAYLTGSTFLFGAAAIGRITDFGVVVLFILA--ALATATREIIKDIEDLDGDRK 192
Query: 287 SGIRTLPVILGKERVLSMSTGILLMA 312
G++TLP+++G ++TG+LL+A
Sbjct: 193 EGLQTLPIVIGVTPAYRVATGVLLVA 218
>sp|Q3INH7|DGGGP_NATPD Digeranylgeranylglyceryl phosphate synthase OS=Natronomonas
pharaonis (strain DSM 2160 / ATCC 35678) GN=NP_4470A
PE=3 SV=1
Length = 277
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 232 GINNVLPYFLHVQKYVLGRPVVFTK----PLLFAVAFSAIFSIVLSLLKDIPDVEGDKKS 287
G+ N L +L ++ G V +LFA+A A ++ ++KD+ D++GD+
Sbjct: 129 GVGNALVAYLTGSTFLYGGAAVGGDLAAVVVLFALAACA--TMAREIVKDVEDIDGDRAE 186
Query: 288 GIRTLPVILGKERVL 302
G+RTLP+++G+ R L
Sbjct: 187 GLRTLPIVIGERRSL 201
>sp|Q9Z5D6|BCHG_RHOS4 Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter
sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM
158) GN=bchG PE=4 SV=1
Length = 302
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 17/109 (15%)
Query: 237 LPYFLHVQKYVLGRPVVF--TKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPV 294
LP+F G P F T LL+A I + L D +EGD++ G+R+LPV
Sbjct: 159 LPWFTGAAVLSAGAPSFFIVTVALLYAFGAHGIMT-----LNDFKALEGDRQHGVRSLPV 213
Query: 295 ILGKERVLSMSTGILLMA----------YASAALAGVFSPILLCKLVTM 333
+LG E ++ ++ MA + AG+ + +L+ +L M
Sbjct: 214 MLGPEVAAKLACTVMAMAQILVITLLVIWGKPIHAGIITALLVAQLFAM 262
>sp|A3CW74|DGGGP_METMJ Digeranylgeranylglyceryl phosphate synthase OS=Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
GN=Memar_1697 PE=3 SV=1
Length = 279
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/246 (24%), Positives = 106/246 (43%), Gaps = 62/246 (25%)
Query: 111 KLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTP-TFLIEVLKPIVPTIMMNIFVVA 169
+ AF R++RP+ + +V L++ + + + LTP + L+ V+ ++ T N+
Sbjct: 2 SVSAFIRITRPH---NAVVAGLTALIGYLIATGTLTPPSLLLAVIVALI-TAGGNV---- 53
Query: 170 INQLSDIAIDK----------------------------SLAMGVMLRSPPLVIALVLRC 201
IN + D+ ID+ +A+ + + L IA++
Sbjct: 54 INDVRDVEIDRINRPDRPIPAGDISLAGARAYAAALFVGGIAIATLTTTLCLAIAIINSV 113
Query: 202 ILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLHVQKYVLGRPVVFTKPLLFA 261
IL Y++ R K +P++ VA+ +L ++ G + L+
Sbjct: 114 IL-IVYAV-----RLKRTPVLGNVAVA-----------YLAGSVFLFGGAFAGIEGLVRN 156
Query: 262 VAFSAI---FSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAAL 318
++ +AI +I LLKD DV+GD G RTLP+I+G + TGI A A A+
Sbjct: 157 LSLAAITFLATIARELLKDAEDVDGDAAGGARTLPMIVGVRK-----TGIFAFACACGAV 211
Query: 319 AGVFSP 324
A P
Sbjct: 212 AASLLP 217
>sp|B6YW76|DGGGP_THEON Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus
onnurineus (strain NA1) GN=TON_1950 PE=3 SV=1
Length = 276
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 86/212 (40%), Gaps = 37/212 (17%)
Query: 111 KLDAFYRLSRPYAWTSIIVGILS--SSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVV 168
+L AF ++RP+ I+ GI+ S++ + D LI L V N
Sbjct: 2 ELKAFIEITRPH--NCILAGIVGLLGSIVALGHFPDPKTALLI-FLVVTVGCAGGN---- 54
Query: 169 AINQLSDIAIDK------SLAMGVMLRSPPLVIALVLRC--------------ILGAAYS 208
IN D IDK L G M R L +++L ILG
Sbjct: 55 TINDYFDYEIDKINRPERPLPRGAMGRKVALYYSMLLFAVGLALAYMINIYAFILGVIAY 114
Query: 209 IDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIF 268
+ + + WK PL IV+ G+ P + V LG L AF +
Sbjct: 115 VTMFIYAWKLKPLPFVGNIVVA-GLTGATPLYGAVAVEHLG-----LAGYLAICAF--LV 166
Query: 269 SIVLSLLKDIPDVEGDKKSGIRTLPVILGKER 300
++ ++KDI DVEGD G +TLP+I GK+R
Sbjct: 167 NVAREVIKDIEDVEGDMAKGAKTLPIIWGKKR 198
>sp|Q9V2P5|DGGGP_PYRAB Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=PYRAB00300 PE=3 SV=2
Length = 277
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 273 SLLKDIPDVEGDKKSGIRTLPVILGKERVLSMST 306
++KDI D+EGD K G +TLP+I+GK R +S+
Sbjct: 171 EIMKDIEDIEGDMKMGAKTLPIIIGKRRAAMISS 204
>sp|Q9HRP0|DGGGP_HALSA Digeranylgeranylglyceryl phosphate synthase OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=VNG_0610G PE=3 SV=2
Length = 276
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 232 GINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFS-IVLSLLKDIPDVEGDKKSGIR 290
G N L +L +V G V + +A A S ++KD+ D+ GD+ +G+R
Sbjct: 130 GAGNALVAYLGGSTFVFGAAAVGSPLAGGVLAALAALSTFAREVIKDVEDLAGDRAAGLR 189
Query: 291 TLPVILGKERVL 302
TLPV++G +R L
Sbjct: 190 TLPVVVGHQRAL 201
>sp|B0R3S1|DGGGP_HALS3 Digeranylgeranylglyceryl phosphate synthase OS=Halobacterium
salinarum (strain ATCC 29341 / DSM 671 / R1) GN=OE_1921R
PE=3 SV=1
Length = 276
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 232 GINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFS-IVLSLLKDIPDVEGDKKSGIR 290
G N L +L +V G V + +A A S ++KD+ D+ GD+ +G+R
Sbjct: 130 GAGNALVAYLGGSTFVFGAAAVGSPLAGGVLAALAALSTFAREVIKDVEDLAGDRAAGLR 189
Query: 291 TLPVILGKERVL 302
TLPV++G +R L
Sbjct: 190 TLPVVVGHQRAL 201
>sp|C5A1J7|DGGGP_THEGJ Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=TGAM_1764 PE=3 SV=1
Length = 276
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 273 SLLKDIPDVEGDKKSGIRTLPVILGKER 300
++KDI DVEGD K G +TLP+ILG+ +
Sbjct: 171 EIVKDIEDVEGDLKKGAKTLPIILGRRK 198
>sp|Q8TZM7|DGGGP_PYRFU Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1963 PE=3 SV=1
Length = 277
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 273 SLLKDIPDVEGDKKSGIRTLPVILGKER 300
++KDI D+EGDK G RTLP+I+G+++
Sbjct: 171 EIMKDIEDIEGDKALGARTLPIIIGEKK 198
>sp|O57753|DGGGP_PYRHO Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 /
NBRC 100139 / OT-3) GN=PH0027 PE=3 SV=1
Length = 277
Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 273 SLLKDIPDVEGDKKSGIRTLPVILGKER 300
++KDI D EGDK+ G RTLP+++GK++
Sbjct: 171 EIMKDIEDFEGDKRLGARTLPIMIGKKK 198
>sp|Q12VF3|DGGGP_METBU Digeranylgeranylglyceryl phosphate synthase OS=Methanococcoides
burtonii (strain DSM 6242) GN=Mbur_1679 PE=3 SV=1
Length = 281
Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 269 SIVLSLLKDIPDVEGDKKSGIRTLPVILGKER 300
+I ++KD+ D+ GDKK G RTLP+++G ++
Sbjct: 175 TIAREIVKDVEDIVGDKKDGARTLPILIGAKK 206
>sp|Q2NGM1|DGGGP_METST Digeranylgeranylglyceryl phosphate synthase OS=Methanosphaera
stadtmanae (strain DSM 3091) GN=Msp_0634 PE=3 SV=1
Length = 272
Score = 40.0 bits (92), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 264 FSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMST 306
F+ + ++ ++KDI D+EGDKK TLP+I G ++ + ++
Sbjct: 157 FAFLMTLSREIIKDIEDIEGDKKEDAHTLPIIYGTKKAVMLAV 199
>sp|Q5JDN5|DGGGP_PYRKO Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=TK1957 PE=3 SV=1
Length = 277
Score = 39.3 bits (90), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 22/28 (78%)
Query: 273 SLLKDIPDVEGDKKSGIRTLPVILGKER 300
++KDI D+EGD G +TLP+++G++R
Sbjct: 171 EVIKDIEDIEGDMAKGAKTLPILIGRKR 198
>sp|Q8TWS9|DGGGP_METKA Digeranylgeranylglyceryl phosphate synthase OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=MK0953 PE=3 SV=1
Length = 271
Score = 38.1 bits (87), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 233 INNVLPYFLHVQKYVLG-----RPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKS 287
I NV+ +L ++ G RP P ++ + + ++V +LKD+ DVEGD
Sbjct: 126 IGNVMVSYLVGSCFLFGAAVGQRP----APAVWLFLLAFLANLVREILKDLEDVEGDAAL 181
Query: 288 GIRTLPVILGKERVLSMST 306
G++TLP+ G+ L ++T
Sbjct: 182 GLKTLPIAYGEGVALRVAT 200
>sp|A2SRL0|DGGGP_METLZ Digeranylgeranylglyceryl phosphate synthase OS=Methanocorpusculum
labreanum (strain ATCC 43576 / DSM 4855 / Z)
GN=Mlab_0795 PE=3 SV=1
Length = 282
Score = 38.1 bits (87), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 259 LFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAAL 318
LFA+ F ++ LLKD D+EGD+ G RTLP+ +G + T +L + + A+
Sbjct: 159 LFAITFFG--TLARELLKDAEDIEGDRLGGARTLPMQIGVRK-----TSVLAVIFVLFAV 211
Query: 319 AGVFSPILLCKLVTMI 334
F P L +V ++
Sbjct: 212 LCSFVPFLTWGVVYLV 227
>sp|C6A2C9|DGGGP_THESM Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus
sibiricus (strain MM 739 / DSM 12597) GN=TSIB_0711 PE=3
SV=1
Length = 279
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 16/78 (20%)
Query: 273 SLLKDIPDVEGDKKSGIRTLPVILGKER------VLSMSTGILLMAYASAALAGVFSPIL 326
+ KDI D+EGDK G +TLP++ G E + S++T I + A + + PI+
Sbjct: 171 EIFKDIEDIEGDKAQGAKTLPIVWGIESSSKIGVIFSVATIIASLLPVKAGIGLGYFPII 230
Query: 327 LCKLVTMIGHSVLGFILW 344
+ V G ILW
Sbjct: 231 I----------VDGIILW 238
>sp|A0B8A0|DGGGP_METTP Digeranylgeranylglyceryl phosphate synthase OS=Methanosaeta
thermophila (strain DSM 6194 / PT) GN=Mthe_1142 PE=3
SV=1
Length = 267
Score = 36.2 bits (82), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 31/49 (63%)
Query: 264 FSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMA 312
SA+ ++ ++KDI D+ GD G +TLP +GK + +++ +L++A
Sbjct: 159 LSALATLSREIVKDIEDLPGDLAHGAKTLPAFIGKRKSFVLASLVLIVA 207
>sp|O29487|Y771_ARCFU Uncharacterized protein AF_0771 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0771 PE=4 SV=1
Length = 289
Score = 35.8 bits (81), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 274 LLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAGVFSPIL 326
LKD+ D+ D KSG RTL V+L +L +S +M + ++ +FS +L
Sbjct: 182 FLKDLKDISADIKSGYRTLAVVLSPSTLLIIS----VMLFIASTFVVIFSSLL 230
>sp|Q4J8K2|DGGGP_SULAC Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=Saci_1565 PE=3 SV=1
Length = 275
Score = 35.4 bits (80), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 268 FSIVLSLLKDIPDVEGDKKSGIRTLPVILGKE 299
F++ +K I D+EGDK++G+ TL V LG++
Sbjct: 166 FTLSREFVKGIEDIEGDKRNGVNTLAVKLGEK 197
>sp|Q57727|DGGGP_METJA Digeranylgeranylglyceryl phosphate synthase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0279 PE=3 SV=1
Length = 283
Score = 35.0 bits (79), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 273 SLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMA 312
++KD D+EGDKK G+ +LP+ GK+ L +T ++++A
Sbjct: 176 EIVKDFEDMEGDKKEGVISLPIKYGKKS-LYFATFLVVLA 214
>sp|Q46BD9|DGGGP_METBF Digeranylgeranylglyceryl phosphate synthase OS=Methanosarcina
barkeri (strain Fusaro / DSM 804) GN=Mbar_A1863 PE=3
SV=1
Length = 289
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
Query: 273 SLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAGVFSPI 325
++KDI D+EGDK G TLP+ +G ++ ++ I LA +FSP+
Sbjct: 187 EIVKDIEDMEGDKMEGADTLPLRVGAKKASYLAALI-------GFLAVIFSPL 232
>sp|A5ULR8|DGGGP_METS3 Digeranylgeranylglyceryl phosphate synthase OS=Methanobrevibacter
smithii (strain PS / ATCC 35061 / DSM 861) GN=Msm_0941
PE=3 SV=1
Length = 283
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 215 RWKASPLMAAVAIVIGNGINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSL 274
+ K++PL+ + + G+ + Y ++ + L A F+ I + +
Sbjct: 123 KLKSTPLIGNLTVGFMTGLCFIF------AGYTFNEGLIIYESYLLAF-FALIMTTAREI 175
Query: 275 LKDIPDVEGDKKSGIRTLPVILG 297
KDI D+EGD G +T P++ G
Sbjct: 176 TKDIEDMEGDMAEGAKTFPILYG 198
>sp|O27170|DGGGP_METTH Digeranylgeranylglyceryl phosphate synthase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_1098 PE=1 SV=1
Length = 281
Score = 33.9 bits (76), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 8/115 (6%)
Query: 233 INNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSA-IFSIVLSLLKDIPDVEGDKKSGIRT 291
+ N+ FL +V G V+ + F A + ++ ++KD+ DVEGD+ G T
Sbjct: 125 VGNITISFLTGLSFVFGGIVLGEVRASILLGFYAFLMTMAREIVKDMEDVEGDRAEGATT 184
Query: 292 LPVILGKERVLSMSTGILLMAYASA---ALAGVFS----PILLCKLVTMIGHSVL 339
LP+ G ++ +L+A ++ L G+FS P+LL + + +++
Sbjct: 185 LPITHGMRISGVLAASFMLIASLTSPSLYLLGIFSALYIPVLLLAVAVFLRAAIM 239
>sp|P26170|BCHG_RHOCB Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter capsulatus
(strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=bchG PE=4
SV=1
Length = 304
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 249 GRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGI 308
G P+V L+A+ I +I D +EGD+K GI++LP + G E ++ +
Sbjct: 178 GFPIVMMA-TLYALGAHGIMTI-----NDFKAIEGDRKLGIKSLPAVYGPEVAAKIACTV 231
Query: 309 LLMAYA 314
+ +A A
Sbjct: 232 MGLAQA 237
>sp|Q971A3|DGGGP_SULTO Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=STK_14510 PE=3 SV=1
Length = 278
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 268 FSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLM 311
F++ +K I DV+GD +G++TL V +G E+ +S IL++
Sbjct: 169 FTLTREFVKGIEDVKGDMTNGVKTLAVRVGIEKTWFISKIILVI 212
>sp|Q8PV96|DGGGP_METMA Digeranylgeranylglyceryl phosphate synthase OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_2075 PE=3 SV=2
Length = 289
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 273 SLLKDIPDVEGDKKSGIRTLPVILGKERV--LSMSTGIL 309
++KDI D+EGD G TLP+ +G ++ L++ TG+L
Sbjct: 187 EIVKDIEDMEGDSLEGADTLPLRIGAKKAGYLAVLTGLL 225
>sp|A6UVU6|DGGGP_META3 Digeranylgeranylglyceryl phosphate synthase OS=Methanococcus
aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=Maeo_1040
PE=3 SV=1
Length = 279
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 258 LLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILL 310
+LF A A +S ++KD D++GDK G+ +LP+ GK + ++ G LL
Sbjct: 160 ILFLCALFATWS--REIIKDYEDLDGDKSEGVISLPIKYGKNSIF-VAIGFLL 209
>sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial
OS=Arabidopsis thaliana GN=SPS3 PE=1 SV=1
Length = 422
Score = 32.7 bits (73), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 271 VLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAGVFSPILLCKL 330
V SLL D + D + G+ +L V++G + +S+ G L++ A ALA + + ++ L
Sbjct: 175 VASLLHDDVLDDADTRRGVGSLNVVMGNK--MSVLAGDFLLSRACGALAALKNTEVVALL 232
Query: 331 VTMIGHSVLG 340
T + H V G
Sbjct: 233 ATAVEHLVTG 242
>sp|Q2FN44|DGGGP_METHJ Digeranylgeranylglyceryl phosphate synthase OS=Methanospirillum
hungatei (strain JF-1 / DSM 864) GN=Mhun_0625 PE=3 SV=1
Length = 280
Score = 32.3 bits (72), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 10/87 (11%)
Query: 233 INNVLPYFLHVQKYVLGRPVVFTKPLL--FAVAFSAIFSIVLS--LLKDIPDVEGDKKSG 288
I N+ +L ++ G + T+ ++ F +A A + ++L+ L+KD D+ GD + G
Sbjct: 129 IGNISVSYLAASIFLFGGAIQGTQGIISVFPIA-GATWGVMLARELIKDAEDMPGDNEHG 187
Query: 289 IRTLPVILGKE-----RVLSMSTGILL 310
RT P++ G ++S + G+L+
Sbjct: 188 ARTFPLLYGIRATIYLALISATAGVLM 214
>sp|Q38833|CHLG_ARATH Chlorophyll synthase, chloroplastic OS=Arabidopsis thaliana GN=CHLG
PE=2 SV=1
Length = 387
Score = 32.3 bits (72), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 237 LPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVIL 296
LP++ + P V LL+++A + ++++ D VEGD+ G+++LPV
Sbjct: 250 LPWWAGQALFGTLTPDVVVLTLLYSIA-----GLGIAIVNDFKSVEGDRALGLQSLPVAF 304
Query: 297 GKERVLSMSTGILLMAYASAA 317
G E + G + + S A
Sbjct: 305 GTETAKWICVGAIDITQLSVA 325
>sp|A7I9E7|DGGGP_METB6 Digeranylgeranylglyceryl phosphate synthase OS=Methanoregula boonei
(strain 6A8) GN=Mboo_1843 PE=3 SV=1
Length = 279
Score = 32.0 bits (71), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 273 SLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALA 319
LLKD D+EGD+ G TL + +G + L+A+A A A
Sbjct: 171 ELLKDAEDIEGDRAHGADTLAIRIGVRKT-------ALIAFACTAFA 210
>sp|P39582|MENA_BACSU Probable 1,4-dihydroxy-2-naphthoate octaprenyltransferase
OS=Bacillus subtilis (strain 168) GN=menA PE=3 SV=1
Length = 311
Score = 32.0 bits (71), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 266 AIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAY---ASAALAGVF 322
AI ++L +I D+E DKK G +TL +++G + +++ +AY + G
Sbjct: 194 AILVGAINLSNNIRDIEEDKKGGRKTLAILMGHKGAVTLLAASFAVAYIWVVGLVITGAA 253
Query: 323 SPILL 327
SP L
Sbjct: 254 SPWLF 258
>sp|Q5W6H5|CHLG_ORYSJ Chlorophyll synthase, chloroplastic OS=Oryza sativa subsp. japonica
GN=CHLG PE=2 SV=1
Length = 376
Score = 31.6 bits (70), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 262 VAFSAIFSIV---LSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAA 317
V ++++SI ++++ D VEGD+ G+++LPV G E + G + + S A
Sbjct: 256 VVLTSLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGMETAKWICVGAIDITQLSVA 314
>sp|B1L6Z7|DGGGP_KORCO Digeranylgeranylglyceryl phosphate synthase OS=Korarchaeum
cryptofilum (strain OPF8) GN=Kcr_1480 PE=3 SV=1
Length = 281
Score = 31.6 bits (70), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 7/51 (13%)
Query: 261 AVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLM 311
+VAF++ +++ +K + D+ GD+ G+RT+ V +G +R TGIL+
Sbjct: 161 SVAFTS--NLIREFVKAVEDLPGDRAHGVRTIAVRIGVKR-----TGILVF 204
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,454,012
Number of Sequences: 539616
Number of extensions: 4484725
Number of successful extensions: 15543
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 15488
Number of HSP's gapped (non-prelim): 69
length of query: 345
length of database: 191,569,459
effective HSP length: 118
effective length of query: 227
effective length of database: 127,894,771
effective search space: 29032113017
effective search space used: 29032113017
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (28.5 bits)