Query 019185
Match_columns 345
No_of_seqs 157 out of 1295
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 07:23:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019185.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/019185hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12887 ubiA tocopherol phyty 100.0 8.2E-36 1.8E-40 288.5 25.8 242 101-345 2-271 (308)
2 PLN02878 homogentisate phytylt 100.0 1.8E-36 3.9E-41 286.9 20.1 211 135-345 7-245 (280)
3 PRK07419 1,4-dihydroxy-2-napht 100.0 2.1E-29 4.5E-34 243.4 22.6 208 109-329 9-247 (304)
4 PLN02922 prenyltransferase 100.0 2E-28 4.4E-33 237.6 24.4 212 110-328 13-260 (315)
5 TIGR02235 menA_cyano-plnt 1,4- 100.0 3.7E-28 8E-33 232.9 23.9 203 115-330 2-235 (285)
6 PRK13387 1,4-dihydroxy-2-napht 100.0 4.2E-28 9.1E-33 235.7 23.6 211 112-329 3-262 (317)
7 TIGR01476 chlor_syn_BchG bacte 100.0 2.5E-28 5.5E-33 233.2 19.5 203 113-327 1-232 (283)
8 PRK05951 ubiA prenyltransferas 100.0 1.7E-27 3.7E-32 229.3 24.1 214 110-337 2-251 (296)
9 COG1575 MenA 1,4-dihydroxy-2-n 100.0 1.9E-27 4.1E-32 227.0 21.9 206 110-328 6-248 (303)
10 PRK06080 1,4-dihydroxy-2-napht 100.0 5.1E-27 1.1E-31 225.0 23.8 203 112-328 3-240 (293)
11 PRK07566 bacteriochlorophyll/c 100.0 7.5E-27 1.6E-31 226.6 24.6 201 109-319 24-252 (314)
12 TIGR02056 ChlG chlorophyll syn 100.0 1.3E-26 2.8E-31 224.3 24.3 201 109-323 13-250 (306)
13 PLN00012 chlorophyll synthetas 100.0 1.9E-26 4.2E-31 228.3 25.4 195 109-317 82-313 (375)
14 TIGR00751 menA 1,4-dihydroxy-2 100.0 1.6E-26 3.4E-31 221.6 22.5 194 120-327 1-235 (284)
15 PRK12392 bacteriochlorophyll c 99.9 8.6E-26 1.9E-30 220.6 24.8 224 108-343 8-270 (331)
16 PRK12875 ubiA prenyltransferas 99.9 9.3E-26 2E-30 215.9 23.8 219 109-345 5-278 (282)
17 PRK13105 ubiA prenyltransferas 99.9 3.8E-25 8.2E-30 211.6 23.7 193 112-320 1-224 (282)
18 PRK13595 ubiA prenyltransferas 99.9 2E-25 4.3E-30 213.7 21.6 190 108-317 8-230 (292)
19 PRK12884 ubiA prenyltransferas 99.9 2.2E-24 4.7E-29 205.4 23.4 194 110-323 2-222 (279)
20 PRK12882 ubiA prenyltransferas 99.9 1.9E-24 4E-29 205.9 22.0 190 111-318 3-219 (276)
21 PRK09573 (S)-2,3-di-O-geranylg 99.9 4.9E-24 1.1E-28 203.4 23.2 189 111-319 2-217 (279)
22 PRK13106 ubiA prenyltransferas 99.9 1.4E-23 3.1E-28 202.5 23.3 207 106-324 9-244 (300)
23 PRK12847 ubiA 4-hydroxybenzoat 99.9 3.3E-23 7.1E-28 198.4 25.5 198 108-323 3-232 (285)
24 TIGR01475 ubiA_other putative 99.9 1.6E-23 3.4E-28 200.2 22.3 197 111-324 1-226 (282)
25 PRK12874 ubiA prenyltransferas 99.9 1.2E-22 2.6E-27 195.4 25.0 200 107-323 3-234 (291)
26 PRK12886 ubiA prenyltransferas 99.9 1.7E-22 3.8E-27 194.2 24.1 197 108-323 4-229 (291)
27 PRK12883 ubiA prenyltransferas 99.9 1.4E-22 3.1E-27 193.0 22.9 178 112-309 3-207 (277)
28 PRK12872 ubiA prenyltransferas 99.9 1.1E-22 2.4E-27 193.9 21.6 208 110-333 2-238 (285)
29 COG0382 UbiA 4-hydroxybenzoate 99.9 2.7E-22 5.8E-27 192.4 23.4 193 109-321 10-231 (289)
30 PRK12870 ubiA 4-hydroxybenzoat 99.9 2.3E-22 5.1E-27 193.2 21.7 182 109-309 6-219 (290)
31 PRK12878 ubiA 4-hydroxybenzoat 99.9 6.8E-22 1.5E-26 192.0 23.6 192 108-316 26-252 (314)
32 PRK12888 ubiA prenyltransferas 99.9 6.7E-22 1.5E-26 189.6 23.1 196 111-323 1-226 (284)
33 PRK12895 ubiA prenyltransferas 99.9 1.3E-21 2.8E-26 187.7 23.6 197 111-324 2-227 (286)
34 PRK12848 ubiA 4-hydroxybenzoat 99.9 1.3E-21 2.9E-26 187.1 23.1 182 110-310 3-216 (282)
35 TIGR01474 ubiA_proteo 4-hydrox 99.9 2.3E-21 5E-26 185.5 23.4 184 114-315 6-219 (281)
36 PRK12869 ubiA protoheme IX far 99.9 4.3E-21 9.4E-26 183.4 23.6 190 111-318 1-221 (279)
37 PRK04375 protoheme IX farnesyl 99.9 4.1E-21 8.9E-26 185.0 23.6 193 110-321 8-232 (296)
38 PLN02809 4-hydroxybenzoate non 99.9 5.7E-21 1.2E-25 183.6 23.1 196 111-323 5-232 (289)
39 TIGR01473 cyoE_ctaB protoheme 99.9 1E-20 2.3E-25 180.6 22.8 191 113-320 1-222 (280)
40 PRK13362 protoheme IX farnesyl 99.9 2.8E-20 6.2E-25 180.1 23.8 183 109-309 10-223 (306)
41 PRK12871 ubiA prenyltransferas 99.9 4.8E-20 1E-24 177.8 23.4 192 110-317 3-236 (297)
42 PRK13591 ubiA prenyltransferas 99.9 4.1E-20 9E-25 178.0 22.4 159 158-327 65-250 (307)
43 PRK12876 ubiA prenyltransferas 99.9 7.2E-20 1.6E-24 176.4 22.9 203 110-324 2-240 (300)
44 PF01040 UbiA: UbiA prenyltran 99.8 8.7E-19 1.9E-23 162.7 19.6 163 125-303 2-193 (257)
45 PRK12873 ubiA prenyltransferas 99.8 2.4E-18 5.3E-23 165.6 22.5 196 111-324 6-237 (294)
46 PRK13592 ubiA prenyltransferas 99.7 8.6E-16 1.9E-20 147.3 19.1 194 110-314 3-231 (299)
47 PLN02776 prenyltransferase 99.6 2.5E-13 5.4E-18 133.1 21.9 176 118-312 1-209 (341)
48 COG0109 CyoE Polyprenyltransfe 99.6 1.3E-13 2.8E-18 132.1 17.2 190 109-321 15-240 (304)
49 PRK12324 phosphoribose diphosp 99.5 8.2E-13 1.8E-17 127.5 18.9 116 109-233 8-152 (295)
50 PRK08238 hypothetical protein; 99.5 7.5E-13 1.6E-17 135.5 16.5 164 106-289 185-377 (479)
51 KOG1381 Para-hydroxybenzoate-p 99.4 4.2E-13 9.2E-18 126.0 7.1 206 111-335 63-304 (353)
52 KOG4581 Predicted membrane pro 99.3 2.3E-12 5E-17 118.7 5.1 213 109-333 58-306 (359)
53 KOG1380 Heme A farnesyltransfe 97.7 5.5E-05 1.2E-09 73.5 5.7 181 110-315 92-311 (409)
54 PRK12884 ubiA prenyltransferas 91.7 1.6 3.5E-05 41.5 10.3 45 264-309 45-92 (279)
55 TIGR02056 ChlG chlorophyll syn 90.1 2.4 5.3E-05 41.2 10.1 50 265-315 63-115 (306)
56 PRK12872 ubiA prenyltransferas 88.5 4 8.6E-05 38.8 10.1 29 261-289 41-69 (285)
57 PF01040 UbiA: UbiA prenyltran 88.2 2.8 6E-05 38.5 8.6 32 267-298 34-66 (257)
58 PRK13592 ubiA prenyltransferas 88.0 8.5 0.00018 37.7 11.9 49 265-314 55-106 (299)
59 PRK12324 phosphoribose diphosp 87.7 3.7 8E-05 40.0 9.3 46 266-311 56-105 (295)
60 PRK12895 ubiA prenyltransferas 86.2 5.6 0.00012 38.6 9.6 76 267-342 48-139 (286)
61 COG0382 UbiA 4-hydroxybenzoate 84.9 6.1 0.00013 37.9 9.2 38 261-298 52-90 (289)
62 PLN02809 4-hydroxybenzoate non 83.0 7.3 0.00016 37.7 8.9 34 265-298 54-88 (289)
63 PRK09573 (S)-2,3-di-O-geranylg 81.8 12 0.00025 35.8 9.8 47 264-311 45-94 (279)
64 PRK12873 ubiA prenyltransferas 81.3 9.1 0.0002 37.3 8.9 45 264-308 52-100 (294)
65 PRK13595 ubiA prenyltransferas 81.3 18 0.00039 35.3 10.8 48 263-311 54-104 (292)
66 PRK12882 ubiA prenyltransferas 81.0 11 0.00024 35.9 9.2 45 265-310 47-94 (276)
67 PRK12887 ubiA tocopherol phyty 80.7 16 0.00034 35.8 10.3 35 273-308 70-107 (308)
68 PRK07566 bacteriochlorophyll/c 80.6 9.5 0.00021 37.3 8.8 44 267-311 76-122 (314)
69 PRK12392 bacteriochlorophyll c 80.0 12 0.00025 37.1 9.3 43 271-314 65-110 (331)
70 TIGR01476 chlor_syn_BchG bacte 80.0 9.1 0.0002 36.6 8.3 44 267-311 49-95 (283)
71 PLN00012 chlorophyll synthetas 79.7 12 0.00027 37.7 9.4 38 267-305 134-174 (375)
72 PRK12883 ubiA prenyltransferas 79.4 13 0.00028 35.4 9.2 42 267-309 48-92 (277)
73 PRK12847 ubiA 4-hydroxybenzoat 79.2 11 0.00025 36.0 8.8 44 266-309 55-102 (285)
74 TIGR01473 cyoE_ctaB protoheme 78.4 14 0.00031 35.2 9.2 48 264-311 43-94 (280)
75 PRK08238 hypothetical protein; 78.3 12 0.00026 38.9 9.1 48 265-312 235-286 (479)
76 PRK12869 ubiA protoheme IX far 77.7 14 0.00031 35.3 8.9 48 264-311 44-95 (279)
77 PRK12888 ubiA prenyltransferas 77.3 11 0.00025 36.2 8.2 45 262-306 45-93 (284)
78 PRK12875 ubiA prenyltransferas 77.3 16 0.00036 35.2 9.2 19 273-291 62-80 (282)
79 TIGR01474 ubiA_proteo 4-hydrox 76.0 17 0.00038 34.8 9.0 43 267-309 51-97 (281)
80 PRK12876 ubiA prenyltransferas 75.6 9.8 0.00021 37.2 7.2 45 261-305 52-100 (300)
81 PLN02776 prenyltransferase 74.9 61 0.0013 32.4 12.6 48 262-309 35-86 (341)
82 PRK13362 protoheme IX farnesyl 73.7 21 0.00045 34.9 9.0 46 264-309 55-104 (306)
83 PRK04375 protoheme IX farnesyl 72.0 23 0.0005 34.2 8.8 45 265-309 53-101 (296)
84 PRK13591 ubiA prenyltransferas 71.9 46 0.001 32.7 10.8 24 264-287 66-89 (307)
85 TIGR01475 ubiA_other putative 71.4 22 0.00047 34.0 8.4 45 262-306 42-90 (282)
86 PRK12871 ubiA prenyltransferas 69.5 37 0.0008 33.0 9.6 44 272-315 57-113 (297)
87 PRK12870 ubiA 4-hydroxybenzoat 69.0 27 0.00057 33.8 8.5 44 266-309 56-103 (290)
88 PRK12886 ubiA prenyltransferas 66.7 34 0.00073 33.1 8.7 39 266-304 52-94 (291)
89 PRK12848 ubiA 4-hydroxybenzoat 64.0 42 0.00091 32.1 8.8 45 267-311 53-101 (282)
90 PRK12878 ubiA 4-hydroxybenzoat 63.3 42 0.00091 32.9 8.7 42 265-306 81-126 (314)
91 PRK13105 ubiA prenyltransferas 63.2 1.2E+02 0.0026 29.4 11.7 24 270-293 48-71 (282)
92 PRK13106 ubiA prenyltransferas 61.6 56 0.0012 31.8 9.2 44 262-305 55-102 (300)
93 TIGR02235 menA_cyano-plnt 1,4- 60.4 58 0.0013 31.4 9.0 68 266-335 45-115 (285)
94 PRK12874 ubiA prenyltransferas 60.0 65 0.0014 31.1 9.3 42 267-308 58-103 (291)
95 TIGR00751 menA 1,4-dihydroxy-2 56.9 77 0.0017 30.6 9.2 58 266-323 38-101 (284)
96 PRK05951 ubiA prenyltransferas 56.3 74 0.0016 30.7 9.0 49 265-313 49-104 (296)
97 PRK06080 1,4-dihydroxy-2-napht 55.4 83 0.0018 30.0 9.2 51 265-315 47-103 (293)
98 PLN02878 homogentisate phytylt 51.7 65 0.0014 31.3 7.7 38 270-308 37-77 (280)
99 PRK13387 1,4-dihydroxy-2-napht 51.7 78 0.0017 31.0 8.4 68 267-335 50-123 (317)
100 COG1575 MenA 1,4-dihydroxy-2-n 49.0 1E+02 0.0022 30.4 8.6 75 267-342 55-135 (303)
101 PLN02922 prenyltransferase 47.1 1.1E+02 0.0023 30.1 8.6 47 266-313 61-110 (315)
102 PRK07419 1,4-dihydroxy-2-napht 46.3 1.2E+02 0.0026 29.7 8.7 68 266-335 58-128 (304)
103 cd00867 Trans_IPPS Trans-Isopr 40.9 20 0.00044 32.6 2.3 39 267-305 157-205 (236)
104 PRK11383 hypothetical protein; 37.6 2.5E+02 0.0054 24.7 8.3 81 198-285 49-132 (145)
105 PRK10581 geranyltranstransfera 35.7 33 0.00072 33.3 3.0 45 264-308 211-266 (299)
106 COG1295 Rbn Ribonuclease BN fa 31.5 4.3E+02 0.0094 25.5 10.0 41 200-241 201-244 (303)
107 COG3462 Predicted membrane pro 27.4 2.3E+02 0.0049 23.9 6.1 28 260-287 63-91 (117)
108 COG0109 CyoE Polyprenyltransfe 23.5 7.2E+02 0.016 24.5 10.3 75 262-337 58-136 (304)
109 PF11298 DUF3099: Protein of u 20.8 76 0.0016 24.6 2.0 21 279-299 7-27 (73)
110 PF04341 DUF485: Protein of un 20.4 4.4E+02 0.0095 20.8 7.7 35 145-179 52-86 (91)
No 1
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=8.2e-36 Score=288.52 Aligned_cols=242 Identities=30% Similarity=0.482 Sum_probs=195.3
Q ss_pred hhhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCC-CChHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Q 019185 101 STSFLDFLTKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLAD-LTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAID 179 (345)
Q Consensus 101 p~~~~~~~~~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~-~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD 179 (345)
|++..+++...+++++|++|||+.+++.+++..+.+++.....+ .+...+...+.++++..+++.+++++|||+|+|+|
T Consensus 2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD 81 (308)
T PRK12887 2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEID 81 (308)
T ss_pred CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 56667788889999999999999999999999888776432221 22222334556666667777777779999999999
Q ss_pred c-------------ChhHHHHh--------------chhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHH
Q 019185 180 K-------------SLAMGVML--------------RSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNG 232 (345)
Q Consensus 180 ~-------------S~~~al~l--------------g~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g 232 (345)
+ |++++..+ .+++.++..+++.+++++||. ||+|+||+|+.++++++..+|
T Consensus 82 ~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~~~~~~~lg~~Ys~--pP~rlKr~~~~~~~~i~~~~g 159 (308)
T PRK12887 82 RINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLITVGISLLIGTAYSL--PPIRLKRFPLLAALCIFTVRG 159 (308)
T ss_pred hcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcC--CchhhcccchhHHHHHHHHHH
Confidence 8 55665332 134444455678899999995 999999999999999988888
Q ss_pred HHhHHHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHH
Q 019185 233 INNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMA 312 (345)
Q Consensus 233 ~i~~lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~a 312 (345)
.++.+|.+.+.+.. .++....+...++.+++.++++.++++.||++|+||||+.|+||+|+++|+|++.+++.+++.++
T Consensus 160 ~i~~~g~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~ 238 (308)
T PRK12887 160 VIVNLGLFLHFQWL-LGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTAC 238 (308)
T ss_pred HHHHHHHHHHHHHH-HhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHH
Confidence 87677877654332 22232344556677888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcC
Q 019185 313 YASAALAGVFSPILLCKLVTMIGHSVLGFILWK 345 (345)
Q Consensus 313 yl~~il~~~~~~~~~~~~~~~~~~~~~~~~l~~ 345 (345)
|+..++.++.+..++....+++||++++..+||
T Consensus 239 y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (308)
T PRK12887 239 YLGMIAVGLLSLPTVNPAFLIVSHLILLALLWW 271 (308)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999985
No 2
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=1.8e-36 Score=286.87 Aligned_cols=211 Identities=51% Similarity=0.869 Sum_probs=186.5
Q ss_pred HHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc-------------ChhHHHHh-------------
Q 019185 135 SLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK-------------SLAMGVML------------- 188 (345)
Q Consensus 135 ~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~-------------S~~~al~l------------- 188 (345)
.++|.+...+.++..+.+.+.+++++++++.++.++|||+|+|+|| |+++|+.+
T Consensus 7 ~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la~ 86 (280)
T PLN02878 7 SLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGW 86 (280)
T ss_pred hHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5666666667776667788999999999999999999999999999 66776433
Q ss_pred --chhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHHHHHHhhhhhcCCcccchHHHHHHHHHHH
Q 019185 189 --RSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSA 266 (345)
Q Consensus 189 --g~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~ 266 (345)
+.++++++++.+++++++||.+.||+|+||+++++.+|+.++++..+++|+|.|+++.++|++..++.+.++..+++.
T Consensus 87 ~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~ 166 (280)
T PLN02878 87 IVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMC 166 (280)
T ss_pred HHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHH
Confidence 244666666678899999998789999999999999999888888888999999999999876666666777677888
Q ss_pred HHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcC
Q 019185 267 IFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAGVFSPILLCKLVTMIGHSVLGFILWK 345 (345)
Q Consensus 267 l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il~~~~~~~~~~~~~~~~~~~~~~~~l~~ 345 (345)
++..+++++||++|+||||+.|++|+|+++|+|++.+++..++.++|+..+++++.++..|.+.+++.||++++..||+
T Consensus 167 ~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~~ 245 (280)
T PLN02878 167 FFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQ 245 (280)
T ss_pred HHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999995
No 3
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.97 E-value=2.1e-29 Score=243.39 Aligned_cols=208 Identities=17% Similarity=0.175 Sum_probs=169.7
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcccc--ccc------
Q 019185 109 TKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIA--IDK------ 180 (345)
Q Consensus 109 ~~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~e--iD~------ 180 (345)
.++++.|++.+||+++..++.|+++|.++|....+++++.. +++++++++++++++|.+|||+|++ .|+
T Consensus 9 ~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~ 85 (304)
T PRK07419 9 PSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLDQ---FITFLLAAILILAWENLSNDVFDADTGIDKNKFHSV 85 (304)
T ss_pred ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccCc
Confidence 34788999999999999999999999999976545788764 6778899999999999999999986 575
Q ss_pred -----ChhHH----HH-------h-------chhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHH
Q 019185 181 -----SLAMG----VM-------L-------RSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVL 237 (345)
Q Consensus 181 -----S~~~a----l~-------l-------g~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~l 237 (345)
++++. +. + .+|+.+..++++++.+++||. ||+|+|++++ ||+.+++++|.++..
T Consensus 86 ~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig~~g~~~~~~YT~--gP~~l~y~gL-GE~~v~l~~G~l~v~ 162 (304)
T PRK07419 86 VNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLVLLCCFLGYLYQG--PPFRLGYQGL-GEPLCFLAFGPLAVA 162 (304)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhheccC--CCcccCCCCc-hHHHHHHHHHHHHHH
Confidence 22321 10 0 245565556678999999996 9999999997 999999999997676
Q ss_pred HHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHH
Q 019185 238 PYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAA 317 (345)
Q Consensus 238 g~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~i 317 (345)
+.+.. ++ + .++...++.++..++.+.+++.+||++|+|+|+++|+||+|+++|+|++.+++.++...+|+..+
T Consensus 163 g~~yv-~t----~--~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i 235 (304)
T PRK07419 163 AALYS-QT----P--SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALEL 235 (304)
T ss_pred HHHHH-hc----C--CCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHH
Confidence 55442 22 1 23335666778888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHH
Q 019185 318 LAGVFSPILLCK 329 (345)
Q Consensus 318 l~~~~~~~~~~~ 329 (345)
..+.....||..
T Consensus 236 ~~v~~g~~p~~~ 247 (304)
T PRK07419 236 LPVLLGFWPWTT 247 (304)
T ss_pred HHHHHhhhHHHH
Confidence 888877666643
No 4
>PLN02922 prenyltransferase
Probab=99.96 E-value=2e-28 Score=237.56 Aligned_cols=212 Identities=15% Similarity=0.183 Sum_probs=168.6
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcccc--ccc-------
Q 019185 110 KKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIA--IDK------- 180 (345)
Q Consensus 110 ~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~e--iD~------- 180 (345)
+++|.|++..||+++..++.|+++|.++|....+++++.. ++++++++++++.++|.+|||+|++ .|+
T Consensus 13 ~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~ 89 (315)
T PLN02922 13 SRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDARR---YGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVV 89 (315)
T ss_pred cHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCC
Confidence 4688899999999999999999999999976545788764 6788999999999999999999986 464
Q ss_pred ----ChhHH----HH-----------h----chhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHH
Q 019185 181 ----SLAMG----VM-----------L----RSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVL 237 (345)
Q Consensus 181 ----S~~~a----l~-----------l----g~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~l 237 (345)
|+++. ++ + +.|++++.++++++.+++||. ||+|+||+|+ |++.+++++|.+...
T Consensus 90 ~~~~s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt~--gP~pl~y~gL-GE~~v~i~fG~l~v~ 166 (315)
T PLN02922 90 NLVGSRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLLAAAILCGYVYQC--PPFRLSYKGL-GEPLCFAAFGPLATT 166 (315)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHhc--CCcccccCcc-hHHHHHHHHHHHHHH
Confidence 33321 00 0 134455555678999999996 9999999998 999999999987666
Q ss_pred HHHHHhhhhhcCC-cc---cchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHH
Q 019185 238 PYFLHVQKYVLGR-PV---VFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAY 313 (345)
Q Consensus 238 g~~~~~~~~~~g~-~~---~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ay 313 (345)
+.|.. ++..++. .. ..+...++.+++..+++.+++++||++|+|+|+++|+||+|+++|+|++.+++.+++..+|
T Consensus 167 g~y~~-~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y 245 (315)
T PLN02922 167 AFYLA-LASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLY 245 (315)
T ss_pred HHHHH-hcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHH
Confidence 55543 2211110 00 1233466778889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHH
Q 019185 314 ASAALAGVFSPILLC 328 (345)
Q Consensus 314 l~~il~~~~~~~~~~ 328 (345)
+..+..++....||.
T Consensus 246 ~~~i~~v~~~~~p~~ 260 (315)
T PLN02922 246 SLLAALGLLKALPLP 260 (315)
T ss_pred HHHHHHHHHhhhhHH
Confidence 999988888766653
No 5
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.96 E-value=3.7e-28 Score=232.87 Aligned_cols=203 Identities=16% Similarity=0.166 Sum_probs=165.0
Q ss_pred HHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcccc--ccc-----------C
Q 019185 115 FYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIA--IDK-----------S 181 (345)
Q Consensus 115 ~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~e--iD~-----------S 181 (345)
|++.+||+++..+++|+++|.++|....+++++.. +++++++++++|+++|.+|||+|++ .|+ |
T Consensus 2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~---~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~~~~~~~~~~ 78 (285)
T TIGR02235 2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDR---FALFLIAAILILAWINLTNDVFDSDTGIDRFKLHSIVNLTGS 78 (285)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCccccCCcccccCc
Confidence 57889999999999999999999976545688764 5778889999999999999999985 465 2
Q ss_pred hhHH----HH-------h-------chhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHHHHHHh
Q 019185 182 LAMG----VM-------L-------RSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLHV 243 (345)
Q Consensus 182 ~~~a----l~-------l-------g~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~~~~~ 243 (345)
+++. ++ . ..|+.+..++++++.+++||. ||+++|++++ ||+++++++|.+++.+.+..
T Consensus 79 ~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg~~g~~~~~~Yt~--gP~~l~y~gL-GE~~v~l~~G~l~v~g~~yv- 154 (285)
T TIGR02235 79 RSLVFWLANFFLLIGLVGIAALSWRWQITVLALVGLCCFLGYLYQG--PPFRLGYQGL-GEPICWLCFGPLAIAAALYA- 154 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcC--CCcccCCCCc-cHHHHHHHHHHHHHHHHHHH-
Confidence 2221 10 0 235555555678999999996 9999999997 99999999999766654442
Q ss_pred hhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHHHHHHh
Q 019185 244 QKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAGVFS 323 (345)
Q Consensus 244 ~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il~~~~~ 323 (345)
++ + .++...++.+++.++.+.+++..||++|+|+|+++|+||+|+++|+|++.+++..++..+|+..+...+..
T Consensus 155 qt----~--~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~ 228 (285)
T TIGR02235 155 QS----Q--SFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGG 228 (285)
T ss_pred hC----C--cCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 2 23335666788888999999999999999999999999999999999999999999999999998888887
Q ss_pred hHHHHHH
Q 019185 324 PILLCKL 330 (345)
Q Consensus 324 ~~~~~~~ 330 (345)
..||.+.
T Consensus 229 ~~p~~~l 235 (285)
T TIGR02235 229 FLPWTTL 235 (285)
T ss_pred hhHHHHH
Confidence 7766543
No 6
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.96 E-value=4.2e-28 Score=235.66 Aligned_cols=211 Identities=15% Similarity=0.110 Sum_probs=160.8
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccc--cc---------
Q 019185 112 LDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAI--DK--------- 180 (345)
Q Consensus 112 L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~ei--D~--------- 180 (345)
+|.|++++||+++..+.+|+++|.++|....+++++.. +++++++++++++++|.+|||+|++. |+
T Consensus 3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~---~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~ 79 (317)
T PRK13387 3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWLL---FLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNG 79 (317)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcch
Confidence 57899999999999999999999999975445677653 57778888999999999999999864 43
Q ss_pred ------ChhHHHH-----------h-------chhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhH
Q 019185 181 ------SLAMGVM-----------L-------RSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNV 236 (345)
Q Consensus 181 ------S~~~al~-----------l-------g~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~ 236 (345)
|+|+... + .+++.+...+++.+.+++||. ||+++||+|+ ||+.+++++|..+.
T Consensus 80 i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~igl~g~~~~~~Yt~--gP~~l~y~gL-Ge~~v~i~~G~~~v 156 (317)
T PRK13387 80 IGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIGLICFAIGILYTG--GPLPLSRMPL-GEIFSGLTMGFGIF 156 (317)
T ss_pred hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHhhhhcC--CCcccccCcc-HHHHHHHHHHHHHH
Confidence 3343211 0 234555555678899999996 9999999995 99999999998655
Q ss_pred HHHHHHhhhhhcCCcc----------cch----HHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHH
Q 019185 237 LPYFLHVQKYVLGRPV----------VFT----KPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVL 302 (345)
Q Consensus 237 lg~~~~~~~~~~g~~~----------~~~----~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~ 302 (345)
.+.+.. ++...+... .++ ...++.+++.++.+..+++.||++|+|+|+++|+||+|+++|+|++.
T Consensus 157 ~g~~yv-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~ 235 (317)
T PRK13387 157 LLAVYI-NTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGV 235 (317)
T ss_pred HHHHHH-hcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHH
Confidence 544332 221110000 000 01123677777888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 019185 303 SMSTGILLMAYASAALAGVFSPILLCK 329 (345)
Q Consensus 303 ~l~~~ll~~ayl~~il~~~~~~~~~~~ 329 (345)
+++.++..++|+..+..++....||..
T Consensus 236 ~l~~~l~~~a~l~~~~~v~~g~lp~~~ 262 (317)
T PRK13387 236 VLFAILFYASYLAIAVIVLMGYISPWA 262 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999988887777555543
No 7
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=99.96 E-value=2.5e-28 Score=233.19 Aligned_cols=203 Identities=19% Similarity=0.173 Sum_probs=150.7
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHhhcccCCC-CChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc-----------
Q 019185 113 DAFYRLSRPYAWTSIIVGILSSSLLPIQSLAD-LTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK----------- 180 (345)
Q Consensus 113 ~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~-~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~----------- 180 (345)
|++++++||+++..+++++++|.+++....++ +++.. .++.++++..++++++|++|||+|+|+|+
T Consensus 1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~~--~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G 78 (283)
T TIGR01476 1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWWL--MLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG 78 (283)
T ss_pred CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHHH--HHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence 36789999999999999999999887432222 33332 23446778899999999999999999998
Q ss_pred --ChhHHHHh---------------chhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHHHHHHh
Q 019185 181 --SLAMGVML---------------RSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLHV 243 (345)
Q Consensus 181 --S~~~al~l---------------g~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~~~~~ 243 (345)
|++++..+ +.+......+++.+.+++||. ||+|+||++++|++.++..++.....+.+..
T Consensus 79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~~Ys~--~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~~- 155 (283)
T TIGR01476 79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFTVVGIVLAVIYSM--PPIKLKRNGWLGPPAVGLSYEGLPWMAGHAI- 155 (283)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecC--chhhhccCCCccHHHHHHHHHHHHHHHHHHH-
Confidence 45554222 122223333467788999996 9999999998899998777665322232221
Q ss_pred hhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHHHHHHh
Q 019185 244 QKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAGVFS 323 (345)
Q Consensus 244 ~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il~~~~~ 323 (345)
.+ . .+...++..+..++++.+++.+||++|+|+|+++|+||+|+++|+|++++++..++.++|+..+......
T Consensus 156 ----~~-~--~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~~ 228 (283)
T TIGR01476 156 ----FA-P--LTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLLIW 228 (283)
T ss_pred ----hC-C--CCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12 1 2223455566677889999999999999999999999999999999999999998888887777655554
Q ss_pred hHHH
Q 019185 324 PILL 327 (345)
Q Consensus 324 ~~~~ 327 (345)
..+|
T Consensus 229 ~~~~ 232 (283)
T TIGR01476 229 GQPW 232 (283)
T ss_pred CccH
Confidence 4444
No 8
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=99.96 E-value=1.7e-27 Score=229.31 Aligned_cols=214 Identities=17% Similarity=0.190 Sum_probs=164.8
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccc--cccc-------
Q 019185 110 KKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDI--AIDK------- 180 (345)
Q Consensus 110 ~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~--eiD~------- 180 (345)
+++|.+++.+||+++..+..|+.+|.++|....+++++.. +++++++.+++++++|.+|||+|+ |.|+
T Consensus 2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~~---~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~ 78 (296)
T PRK05951 2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPLL---GALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYR 78 (296)
T ss_pred ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCC
Confidence 3789999999999999999999999999976545777654 677889999999999999999995 4553
Q ss_pred ---------ChhHHHHh-----------c-------hhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHH
Q 019185 181 ---------SLAMGVML-----------R-------SPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGI 233 (345)
Q Consensus 181 ---------S~~~al~l-----------g-------~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~ 233 (345)
|++++..+ + .++.+...+++++.++.||. ||+++|++++ |++.+++.+|.
T Consensus 79 ~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~~~~~~~~~~Yt~--~P~~lky~gl-Ge~~v~~~~g~ 155 (296)
T PRK05951 79 QHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLALLGVFLWTCYMG--PPFFLKYRWL-GEHLVFYAWSH 155 (296)
T ss_pred CCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcC--CCcccCCCCc-hHHHHHHHHHH
Confidence 23333211 1 22333334578899999996 9999999886 99999999998
Q ss_pred HhHHHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHH
Q 019185 234 NNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAY 313 (345)
Q Consensus 234 i~~lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ay 313 (345)
.+++|.+... + +.. +...+...+...+++..+++.||++|+|+|+++|+||+|+++|+|++ ++...+...+|
T Consensus 156 ~~vlg~~~~~-~----~~~--~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~ 227 (296)
T PRK05951 156 MLVMGLIYVW-L----GNL--SSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPY 227 (296)
T ss_pred HHHHHHHHHH-h----Ccc--cHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHH
Confidence 7666665432 1 122 22455567777888999999999999999999999999999999999 77777788889
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Q 019185 314 ASAALAGVFSPILLCKLVTMIGHS 337 (345)
Q Consensus 314 l~~il~~~~~~~~~~~~~~~~~~~ 337 (345)
+..+..++....|+...+..+++-
T Consensus 228 ~~~~~~~~~g~~~~~~l~~ll~lp 251 (296)
T PRK05951 228 VILQILLIAILTPLISLWALLSLL 251 (296)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHH
Confidence 888888887766665555544443
No 9
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.96 E-value=1.9e-27 Score=227.02 Aligned_cols=206 Identities=18% Similarity=0.244 Sum_probs=165.0
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcccc--cc-----c--
Q 019185 110 KKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIA--ID-----K-- 180 (345)
Q Consensus 110 ~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~e--iD-----~-- 180 (345)
++.+.|+++.||+|+..++.|++.|.++|......+++. .++++++++++++..+|..|||+|++ .| +
T Consensus 6 ~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~~---~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~ 82 (303)
T COG1575 6 SKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNLL---VALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLK 82 (303)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccc
Confidence 356899999999999999999999999997764456654 47889999999999999999999985 56 2
Q ss_pred --------ChhHHHHh--------------------chhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHH
Q 019185 181 --------SLAMGVML--------------------RSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNG 232 (345)
Q Consensus 181 --------S~~~al~l--------------------g~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g 232 (345)
+.+.+.++ ..|.++..+++|++.+++|++ +|+++++.|+ |++.++.++|
T Consensus 83 ~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG~l~~~~g~~YTg--Gp~PlgY~gL-GEi~~~vffG 159 (303)
T COG1575 83 QSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLGLLCIAAGILYTG--GPFPLGYMGL-GEIFVGVFFG 159 (303)
T ss_pred ccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHheeeecc--CCcCcccCCH-HHHHHHHHHH
Confidence 22222111 123334445689999999997 9999999997 9999999999
Q ss_pred HHhHHHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHH
Q 019185 233 INNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMA 312 (345)
Q Consensus 233 ~i~~lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~a 312 (345)
.+...+.|. .|+ +. .+...++.+++..+.+..++..||++|+|+|+++|++|+|||+|+++++.+...++..+
T Consensus 160 ~l~v~g~~y-iqt----~~--~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a 232 (303)
T COG1575 160 PLIVLGAYY-IQT----GR--LSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVA 232 (303)
T ss_pred HHHHHHHHH-Hhc----cc--chHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHH
Confidence 976654443 222 12 22346677888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHH
Q 019185 313 YASAALAGVFSPILLC 328 (345)
Q Consensus 313 yl~~il~~~~~~~~~~ 328 (345)
|+..++..+....+|.
T Consensus 233 ~l~~~~~~i~~~~~~~ 248 (303)
T COG1575 233 YLAIVIFVILGLFPVW 248 (303)
T ss_pred HHHHHHHHHHHhchHH
Confidence 9999987666654443
No 10
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=99.96 E-value=5.1e-27 Score=225.02 Aligned_cols=203 Identities=18% Similarity=0.219 Sum_probs=159.8
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccc--cccc---------
Q 019185 112 LDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDI--AIDK--------- 180 (345)
Q Consensus 112 L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~--eiD~--------- 180 (345)
+|+|++++||+++..+.+|+++|.++|... .++++.. +++++++.+++++++|.+|||+|+ |+|+
T Consensus 3 ~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~~---~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~ 78 (293)
T PRK06080 3 FKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPLL---ALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRA 78 (293)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHHH---HHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCccc
Confidence 678999999999999999999999998532 3456543 567788899999999999999999 4674
Q ss_pred ------ChhHHHHh-----------c-------hhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhH
Q 019185 181 ------SLAMGVML-----------R-------SPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNV 236 (345)
Q Consensus 181 ------S~~~al~l-----------g-------~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~ 236 (345)
|++++..+ + .++..+..+++++.+++||. ||+|+|++++ ||+.+++.+|...+
T Consensus 79 l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~Ys~--~p~~~~~~gl-ge~~~~~~~G~~~~ 155 (293)
T PRK06080 79 IGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLGLLCIAAAILYTG--GPKPYGYTGL-GELFVGVFFGLVIV 155 (293)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcC--CCCccCCCCc-HHHHHHHHHHHHHH
Confidence 45554221 1 22333334467788999996 9999999886 99998888888655
Q ss_pred HHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHH
Q 019185 237 LPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASA 316 (345)
Q Consensus 237 lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~ 316 (345)
.+.+.. ++ +. .+...++.+++..+++.++++.||++|+|+|+++|+||+|+++|+|++.+++..+..++|+..
T Consensus 156 ~~~~~~-~~----~~--~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~ 228 (293)
T PRK06080 156 LGTYYL-QA----GT--VDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCI 228 (293)
T ss_pred HHHHHH-hc----CC--CCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHH
Confidence 543331 11 11 233566778888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHH
Q 019185 317 ALAGVFSPILLC 328 (345)
Q Consensus 317 il~~~~~~~~~~ 328 (345)
+...+....+|.
T Consensus 229 ~~~~~~~~~~~~ 240 (293)
T PRK06080 229 VLLALLGLASPW 240 (293)
T ss_pred HHHHHHhhhhHH
Confidence 988887755554
No 11
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=99.95 E-value=7.5e-27 Score=226.62 Aligned_cols=201 Identities=18% Similarity=0.212 Sum_probs=148.2
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHH-HHHHHHHHHHHHHHHHHhhhhhccccccc-------
Q 019185 109 TKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLI-EVLKPIVPTIMMNIFVVAINQLSDIAIDK------- 180 (345)
Q Consensus 109 ~~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~-~~ll~~la~~l~~~a~~~iNDy~D~eiD~------- 180 (345)
.+++++|++++||+++..+++++++|.+.+.. .++...... .++.++++..++++++|++|||+|+|+|+
T Consensus 24 ~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rp 101 (314)
T PRK07566 24 TSIWKARLQLMKPITWFPPMWAFLCGAVSSGA--FGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYRP 101 (314)
T ss_pred chHHHHHHHHhCCcchHHHHHHHHHHHHHcCC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCCCC
Confidence 46889999999999999999999988776532 223221111 13445677788999999999999999998
Q ss_pred ------ChhHHHHh-----------c---hhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHHHH
Q 019185 181 ------SLAMGVML-----------R---SPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYF 240 (345)
Q Consensus 181 ------S~~~al~l-----------g---~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~~ 240 (345)
|++++..+ + .+......+++.+++++||. ||+++||+++++++.++..+|.+.+++.+
T Consensus 102 l~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~l~~~~~~~~Yt~--gP~~lK~~~~~g~i~vg~~~g~~~~~~g~ 179 (314)
T PRK07566 102 IPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAALLGLFLAWIYSA--PPLRLKQNGWLGNYAVGLSYEGLPWWAGA 179 (314)
T ss_pred CCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhcC--CccccccccchhhHHHHHHHHHHHHHHHH
Confidence 45555322 1 12233333467778999996 99999999988999998887764333333
Q ss_pred HHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHHH
Q 019185 241 LHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALA 319 (345)
Q Consensus 241 ~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il~ 319 (345)
...+ +.. .+...++.+++.++++.+++.+||++|+|+|+++|+||+|+++|+|++.+++..++.++|+..+..
T Consensus 180 ~~~~----~~~--~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~~~ 252 (314)
T PRK07566 180 AAFG----AGL--PSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVIAL 252 (314)
T ss_pred HHhc----cCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 111 223445556677788899999999999999999999999999999999999988888888776443
No 12
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=99.95 E-value=1.3e-26 Score=224.27 Aligned_cols=201 Identities=17% Similarity=0.233 Sum_probs=148.8
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHH---HHHHHHHHHHHHHHHHHHHhhhhhccccccc-----
Q 019185 109 TKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTF---LIEVLKPIVPTIMMNIFVVAINQLSDIAIDK----- 180 (345)
Q Consensus 109 ~~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~---l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~----- 180 (345)
.+++|.|++++||+++..+++++++|...+. ++++.. ....+.++++++++++++|.+|||+|+|+|+
T Consensus 13 ~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~~----~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~~ 88 (306)
T TIGR02056 13 TNIWKIRLQLMKPITWIPLIWGVVCGAAASG----NFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINEPY 88 (306)
T ss_pred hhHHHHHHHHcChHhhHHHHHHHHHHHHHcC----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCC
Confidence 5678999999999999999999999987542 343321 1113445677789999999999999999998
Q ss_pred --------ChhHHHHh-----------ch----------hHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHH
Q 019185 181 --------SLAMGVML-----------RS----------PPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGN 231 (345)
Q Consensus 181 --------S~~~al~l-----------g~----------~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~ 231 (345)
|++++..+ +. +..+...+++.+++++||. ||+|+||++++|++.++..+
T Consensus 89 Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~--gP~~lk~~g~~G~i~vg~~~ 166 (306)
T TIGR02056 89 RPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSA--PPLKLKQNGWLGNFALGASY 166 (306)
T ss_pred CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcC--ChhhhhhcccHHHHHHHHHH
Confidence 44554221 11 1223333467888999996 99999999988999887777
Q ss_pred HHHhHHHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHH
Q 019185 232 GINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLM 311 (345)
Q Consensus 232 g~i~~lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ 311 (345)
+...+.+.+.. .| . .+...++..+..++++.++++.||++|+|+|+++|+||+|+++|+|++.+++..++..
T Consensus 167 ~~~~~~~~~a~-----~g-~--~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~ 238 (306)
T TIGR02056 167 IALPWWAGHAL-----FG-E--LNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDI 238 (306)
T ss_pred HHHHHHHHHHH-----hC-C--CcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHH
Confidence 65433332321 12 2 2234455666777899999999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHh
Q 019185 312 AYASAALAGVFS 323 (345)
Q Consensus 312 ayl~~il~~~~~ 323 (345)
++...+......
T Consensus 239 ~~~~~~~~~~~~ 250 (306)
T TIGR02056 239 FQGLIAAYLLAI 250 (306)
T ss_pred HHHHHHHHHHHh
Confidence 777666544433
No 13
>PLN00012 chlorophyll synthetase; Provisional
Probab=99.95 E-value=1.9e-26 Score=228.29 Aligned_cols=195 Identities=19% Similarity=0.276 Sum_probs=143.0
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHH---HHHHHHHHHHHHHHHHHHHhhhhhccccccc-----
Q 019185 109 TKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTF---LIEVLKPIVPTIMMNIFVVAINQLSDIAIDK----- 180 (345)
Q Consensus 109 ~~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~---l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~----- 180 (345)
.+++|.|++++||++|....+++++|.+... .+++.. ....+.++++..++++++|++|||+|+|+|+
T Consensus 82 ~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~g----~~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~ 157 (375)
T PLN00012 82 TDIWKIRLQLTKPVTWPPLVWGVLCGAAASG----NFHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPY 157 (375)
T ss_pred hHHHHHHHHHhCHHHHHHHHHHHHHHHHHcC----CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCCC
Confidence 6788999999999999999999999987432 233321 1123566777889999999999999999998
Q ss_pred --------ChhHHHHh-----------ch---------hHHHH-HHHHHHHHhHhccCCcccccccccCcchhHHHHHHH
Q 019185 181 --------SLAMGVML-----------RS---------PPLVI-ALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGN 231 (345)
Q Consensus 181 --------S~~~al~l-----------g~---------~~l~~-~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~ 231 (345)
|+++++.+ +. .+... ..+++.+++++||. ||+++||++++|++.++..+
T Consensus 158 Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~--pPl~lKr~~~~G~v~lG~~~ 235 (375)
T PLN00012 158 RPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSA--PPLKLKQNGWIGNYALGASY 235 (375)
T ss_pred CCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcC--CchhhhHhccHhHHHHHHHH
Confidence 45555331 10 11122 22456778999996 99999999999999877777
Q ss_pred HHHhHHHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHH
Q 019185 232 GINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLM 311 (345)
Q Consensus 232 g~i~~lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ 311 (345)
+.+.+.+.+. +.| . .+...++..++.++++.++++.||++|+|+|+++|++|+||++|+|++++++..++.+
T Consensus 236 ~~lp~~~g~a-----~~g-~--~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l 307 (375)
T PLN00012 236 ISLPWWAGQA-----LFG-T--LTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDI 307 (375)
T ss_pred HHHHHHHHHH-----HcC-C--CCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHH
Confidence 6532222222 122 2 2234455566777899999999999999999999999999999999999998766655
Q ss_pred HHHHHH
Q 019185 312 AYASAA 317 (345)
Q Consensus 312 ayl~~i 317 (345)
.+...+
T Consensus 308 ~~l~~~ 313 (375)
T PLN00012 308 TQLSVA 313 (375)
T ss_pred HHHHHH
Confidence 554433
No 14
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.95 E-value=1.6e-26 Score=221.56 Aligned_cols=194 Identities=17% Similarity=0.176 Sum_probs=152.7
Q ss_pred ccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhcccc--ccc---------------Ch
Q 019185 120 RPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIA--IDK---------------SL 182 (345)
Q Consensus 120 RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~e--iD~---------------S~ 182 (345)
||+++..++.|+++|.++|.... .+++.. +++++++++++++++|.+|||+|++ +|+ |+
T Consensus 1 Rp~tl~~s~~pv~lG~ala~~~~-~f~~~~---~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~ 76 (284)
T TIGR00751 1 RPKTLPLAIAPIVAGTALAAWLH-AFVWLV---ALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP 76 (284)
T ss_pred CCchHHHHHHHHHHHHHHHHHcC-CccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence 99999999999999999997653 677654 6778889999999999999999984 342 33
Q ss_pred hHHHH-----------hc-------hh------HHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHH
Q 019185 183 AMGVM-----------LR-------SP------PLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLP 238 (345)
Q Consensus 183 ~~al~-----------lg-------~~------~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg 238 (345)
++... +| .+ ++.....++++.+++||. ||+|+|++++ ||+.+++++|.+...|
T Consensus 77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~--gP~~l~y~gL-GE~~v~i~~G~l~v~g 153 (284)
T TIGR00751 77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTV--GSKPYGYAGL-GDISVLVFFGPLAVLG 153 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcC--CCCccccCch-HHHHHHHHHHHHHHHH
Confidence 33210 11 22 334444578889999996 9999999997 9999999999876665
Q ss_pred HHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHH
Q 019185 239 YFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAAL 318 (345)
Q Consensus 239 ~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il 318 (345)
.+.. ++ +.. +...++.++..++++.+++.+||++|+|+|+++|+||+|+++|+|++++++.+++..+|+..+.
T Consensus 154 ~~yv-q~----~~~--~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~ 226 (284)
T TIGR00751 154 TQYL-QA----HRV--DWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFV 226 (284)
T ss_pred HHHH-hc----CCC--CHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHH
Confidence 5442 22 222 2345556777888899999999999999999999999999999999999999999999988887
Q ss_pred HHHHhhHHH
Q 019185 319 AGVFSPILL 327 (345)
Q Consensus 319 ~~~~~~~~~ 327 (345)
.+.....||
T Consensus 227 ~~~~~~~p~ 235 (284)
T TIGR00751 227 FMLATPISW 235 (284)
T ss_pred HHHHhhchH
Confidence 776555444
No 15
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=99.95 E-value=8.6e-26 Score=220.55 Aligned_cols=224 Identities=19% Similarity=0.286 Sum_probs=154.1
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHhhcccC-CCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc------
Q 019185 108 LTKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSL-ADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK------ 180 (345)
Q Consensus 108 ~~~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~-~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~------ 180 (345)
..+++|++++++||++++ ..+|.+.|..+|.+.. +.++... ..+...++.+.+..++++++|||+|+|+|+
T Consensus 8 ~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~~-l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtR 85 (331)
T PRK12392 8 FVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDYL-LLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTR 85 (331)
T ss_pred hhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHHH-HHHHHHHHHHHHHHHHHhHHhcceeecccccCCCCC
Confidence 356899999999999998 7788888888875321 2222111 112223444456677899999999999998
Q ss_pred -------ChhHHHHh-----------ch-----------hHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHH
Q 019185 181 -------SLAMGVML-----------RS-----------PPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGN 231 (345)
Q Consensus 181 -------S~~~al~l-----------g~-----------~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~ 231 (345)
|+++++.+ +. +..+...+++.+++++||. ||+++||++++++..+++.+
T Consensus 86 pl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~--~P~~lKr~~~~g~~~vGl~~ 163 (331)
T PRK12392 86 PIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSA--PPLKLKKNILTSAPAVGFSY 163 (331)
T ss_pred CCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcC--CchhhhccchhHHHHHHHHH
Confidence 45655322 10 1112222456789999996 99999999998999888888
Q ss_pred HHHhHHHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHH
Q 019185 232 GINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLM 311 (345)
Q Consensus 232 g~i~~lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ 311 (345)
+.....+.+. .+| . .+...++.+++.++++.+++++||++|+|+|++.|+||+|+++|++++.+++.....+
T Consensus 164 ~~~~~~~~~a-----~~g-~--~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~ 235 (331)
T PRK12392 164 GFITFLSANA-----LFS-D--IRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDL 235 (331)
T ss_pred HHHHHHHHHH-----Hhc-C--CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHH
Confidence 7643333322 122 1 2234455666777899999999999999999999999999999999999998877767
Q ss_pred HHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHh
Q 019185 312 AYASAALAGVFSPILLC---KLVTMIGHSVLGFIL 343 (345)
Q Consensus 312 ayl~~il~~~~~~~~~~---~~~~~~~~~~~~~~l 343 (345)
..+..+..+..+...+. ..+.++.|...-.-+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~l 270 (331)
T PRK12392 236 VFAVFAWLAWSWGFTVLMYFILVGLVLNIVIQIQL 270 (331)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 77777766666654333 344444455444333
No 16
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.95 E-value=9.3e-26 Score=215.94 Aligned_cols=219 Identities=26% Similarity=0.386 Sum_probs=144.7
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCC-CChHHHHHHHHHHHHH--HHHHHHHHhhhhhccccccc--Chh
Q 019185 109 TKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLAD-LTPTFLIEVLKPIVPT--IMMNIFVVAINQLSDIAIDK--SLA 183 (345)
Q Consensus 109 ~~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~-~~~~~l~~~ll~~la~--~l~~~a~~~iNDy~D~eiD~--S~~ 183 (345)
.++++.++++.||++|..++.|++.|.++|....++ +++. ++++++. +..+.+.|++|||+|+|+|| .+|
T Consensus 5 ~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~-----~~~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~prk 79 (282)
T PRK12875 5 GDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPA-----AVALFAYFLFPANVFLYGVNDVFDADTDELNPKK 79 (282)
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHH-----HHHHHHHHHHHHHHHHhcchhhhhhhccccCCCc
Confidence 568999999999999999999999999999764332 4442 1222222 22445667799999999998 111
Q ss_pred --------HH-------HHh----c-------hhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHH
Q 019185 184 --------MG-------VML----R-------SPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVL 237 (345)
Q Consensus 184 --------~a-------l~l----g-------~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~l 237 (345)
++ .++ + .+.....++.+++++++||. ||+|+|++|+.+..+.+... .....
T Consensus 80 ~~~r~~~~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~~~ll~~i~~~~~YS~--pP~rlk~~p~~~~~~~g~~~-~~~~~ 156 (282)
T PRK12875 80 DREREVRYRGDRRVLVAVALSGALALAFLLVLPPAAWPALLAFLVLSVEYSA--PPLRFKTTPVLDSLSNGLYI-LPGVA 156 (282)
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcC--CCccchhccHHHHHHHHHHH-HHHHH
Confidence 10 000 1 11111222356789999996 99999999996554432221 11112
Q ss_pred HHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHH
Q 019185 238 PYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAA 317 (345)
Q Consensus 238 g~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~i 317 (345)
+++... | . .+...+ .+..++|+.+++++||++|+|+|+++|+||+|+++|+|++++++..+..++.++.+
T Consensus 157 ~y~~~t-----g-~--~~~~~l--~~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~ 226 (282)
T PRK12875 157 AYALVS-----G-S--LPPLLA--VAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFA 226 (282)
T ss_pred HHHHHc-----C-C--CcHHHH--HHHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHH
Confidence 333321 1 1 222232 22346889999999999999999999999999999999999877666444433333
Q ss_pred HHHHHh-----------------------hHHHH-HHHHHHHHHHHHHHhcC
Q 019185 318 LAGVFS-----------------------PILLC-KLVTMIGHSVLGFILWK 345 (345)
Q Consensus 318 l~~~~~-----------------------~~~~~-~~~~~~~~~~~~~~l~~ 345 (345)
.++... -++|. ++.|++|.+++.+.||+
T Consensus 227 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (282)
T PRK12875 227 AVDLRLGALLLVYPALVLAILRAGIAVDRAYWWFPAINTVVGMLLTLGGLWR 278 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 221111 15666 99999999999999984
No 17
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.94 E-value=3.8e-25 Score=211.63 Aligned_cols=193 Identities=21% Similarity=0.263 Sum_probs=136.6
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc-----------
Q 019185 112 LDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK----------- 180 (345)
Q Consensus 112 L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~----------- 180 (345)
+|.+++++||++|+.+.+|+.+|.++|.+. .++.. .+.++......+.+.|.+|||+|+|.|+
T Consensus 1 ~~~~~~~~rP~~wi~~a~pf~~g~~la~~~---~~~~~---l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~~g~ 74 (282)
T PRK13105 1 IRQLLLSSRPISWINTAYPFAAAYLLAGGE---IDWLF---VVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGVEGA 74 (282)
T ss_pred ChhHHHhcccHHHhccHHHHHHHHHHHCCC---CChHH---HHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCCCCc
Confidence 367899999999999999999999999322 23321 1222222334455556679999999886
Q ss_pred -ChhHH----HHh---------------chhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHHHH
Q 019185 181 -SLAMG----VML---------------RSPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYF 240 (345)
Q Consensus 181 -S~~~a----l~l---------------g~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~~ 240 (345)
|+++. +.. +.++.+....++++.++.||. ||.|+|++|+.++++..+.+.....+|.+
T Consensus 75 i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~~~ai~~~~~YS~--~p~rlk~~gl~d~~t~~~~f~~~~v~G~~ 152 (282)
T PRK13105 75 VLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVLAVSVFAVVAYSA--PGLRFKERPFLDSLTSSTHFVSPALYGLV 152 (282)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcC--CCccccccchHHHHHHHHHHHHHHHHHHH
Confidence 33321 111 123333334578899999996 99999999998886543333221233333
Q ss_pred HHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHHHH
Q 019185 241 LHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAG 320 (345)
Q Consensus 241 ~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il~~ 320 (345)
.. |+.. +...++.+..+++|+.+++++||++|+|+||++|+||+|+++|+|++.+++..+..++++..+..+
T Consensus 153 ~~------~~~~--~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~~ 224 (282)
T PRK13105 153 LA------GAPF--TAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLALP 224 (282)
T ss_pred Hh------hccc--cHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 2222 234556677788899999999999999999999999999999999999999999999988877544
No 18
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.94 E-value=2e-25 Score=213.70 Aligned_cols=190 Identities=23% Similarity=0.278 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCCh--HHHHHHHHHHHHHHHHHHHHHhhhhhccccccc-----
Q 019185 108 LTKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTP--TFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK----- 180 (345)
Q Consensus 108 ~~~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~--~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~----- 180 (345)
....++.+++.+||.+|+.++.++++|...+.. .+++ .. +++++......+.+.|++|||+|+|+|+
T Consensus 8 ~~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~---~~~~~~~~---~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~ 81 (292)
T PRK13595 8 ILLPLRRLLLISRPALWVNTVGTLVTGVWLTGH---LYTLDPGV---LPLLLYLTLPFNLLIYGLNDLADRETDAASPRK 81 (292)
T ss_pred hhhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC---cccchhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCC
Confidence 356788899999999999999999999977743 2343 32 4455666677899999999999999998
Q ss_pred --------ChhHHHHh-----------c-------hhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHH
Q 019185 181 --------SLAMGVML-----------R-------SPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGIN 234 (345)
Q Consensus 181 --------S~~~al~l-----------g-------~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i 234 (345)
|++++..+ + .+.......++.+++++||. ||+|+|++|++++++. ..+|.
T Consensus 82 ~~i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~~v~~~l~~~YS~--pPlRlK~rp~l~~l~~-~~~g~- 157 (292)
T PRK13595 82 GGWQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLLLLYAALFVGYSL--PPLRFKARPFLDGLSN-AAYAL- 157 (292)
T ss_pred CCCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcc--CccchhcCcchhHHHH-HHHHH-
Confidence 34443221 1 11112223467789999995 9999999999999986 33443
Q ss_pred hHHHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHH
Q 019185 235 NVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYA 314 (345)
Q Consensus 235 ~~lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl 314 (345)
|.++... +.|... .+.. .+...+|+.++++++|++|+|+||+.|+||+|+++|+|++.+++..+.+++-+
T Consensus 158 -p~~~~~~----~~g~~~---~~~~--l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~ 227 (292)
T PRK13595 158 -PLALPAL----ALGAPV---PWPP--LLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGA 227 (292)
T ss_pred -HHHHHHH----HcCCcc---hHHH--HHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHH
Confidence 4333321 223221 1222 23445788999999999999999999999999999999999999888765544
Q ss_pred HHH
Q 019185 315 SAA 317 (345)
Q Consensus 315 ~~i 317 (345)
+..
T Consensus 228 ~~~ 230 (292)
T PRK13595 228 LLW 230 (292)
T ss_pred HHH
Confidence 433
No 19
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=99.93 E-value=2.2e-24 Score=205.36 Aligned_cols=194 Identities=21% Similarity=0.365 Sum_probs=146.4
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc---------
Q 019185 110 KKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK--------- 180 (345)
Q Consensus 110 ~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~--------- 180 (345)
++++++++++||+++..+.++.+.|.++|... +++. .+++++++.+++++++|++|||+|+|+|+
T Consensus 2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~---~~~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~ 75 (279)
T PRK12884 2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGG---LPLD---EALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP 75 (279)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCC---CchH---HHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence 47899999999999999999999999888542 2222 25667788999999999999999999997
Q ss_pred ----ChhHHHHhc--------------hhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHHHHHH
Q 019185 181 ----SLAMGVMLR--------------SPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLH 242 (345)
Q Consensus 181 ----S~~~al~lg--------------~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~~~~ 242 (345)
|++++..++ ++...+..+++.+++++||. ++||+++.++++++..+|.....+....
T Consensus 76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g~~~~ 150 (279)
T PRK12884 76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVVILVSVLGILYNW-----KLKEYGLIGNLYVAFLTGMTFIFGGIAV 150 (279)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----hhccccchhHHHHHHHHHHHHHHHHHHh
Confidence 456653321 12223333456778999995 6899998899998887776333333221
Q ss_pred hhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHHHHHH
Q 019185 243 VQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAGVF 322 (345)
Q Consensus 243 ~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il~~~~ 322 (345)
+.. . ...++..+..++|+.+.++.+|++|+|+|+++|+||+|+++|+|++.+++..+....+++.++..+.
T Consensus 151 ------~~~-~--~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (279)
T PRK12884 151 ------GEL-N--EAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLF 221 (279)
T ss_pred ------CCC-c--hHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 1 1344455566788999999999999999999999999999999999999988887777766655444
Q ss_pred h
Q 019185 323 S 323 (345)
Q Consensus 323 ~ 323 (345)
.
T Consensus 222 ~ 222 (279)
T PRK12884 222 G 222 (279)
T ss_pred H
Confidence 3
No 20
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=99.93 E-value=1.9e-24 Score=205.90 Aligned_cols=190 Identities=22% Similarity=0.311 Sum_probs=138.5
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc----------
Q 019185 111 KLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK---------- 180 (345)
Q Consensus 111 ~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~---------- 180 (345)
++|++++++||+++..+.++.+.|.+++.+. .++. ...++++++.+++++++|++|||+|+|+|+
T Consensus 3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~---~~~~--~~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~ 77 (276)
T PRK12882 3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGI---LSSP--SLTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS 77 (276)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHhccc---cchH--HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence 3789999999999999999999999988542 2211 124577888899999999999999999997
Q ss_pred ---ChhHHHHhc--------------hhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHHHHHHh
Q 019185 181 ---SLAMGVMLR--------------SPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLHV 243 (345)
Q Consensus 181 ---S~~~al~lg--------------~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~~~~~ 243 (345)
|+++++.++ .+...+..+++.++.++||. |+||+|.++|++++...|.....|...
T Consensus 78 G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~~~~~~~~~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g~~~-- 150 (276)
T PRK12882 78 GAVSPRGALAFSILLFAAGVALAFLLPPLCLAIALFNSLLLVLYAE-----TLKGTPGLGNASVAYLTGSTFLFGGAA-- 150 (276)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----HHhcccchhHHHHHHHHHHHHHHHHHH--
Confidence 566664431 11122222356667889995 899999999999877666542233221
Q ss_pred hhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHH
Q 019185 244 QKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAAL 318 (345)
Q Consensus 244 ~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il 318 (345)
.+.. . ....+...+..++++.+++++||++|+|+|+++|++|+|+++|+|++.++.........++..+
T Consensus 151 ----~~~~-~-~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~ 219 (276)
T PRK12882 151 ----VGTE-G-LLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPL 219 (276)
T ss_pred ----hccc-c-hHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1211 1 1123344555667889999999999999999999999999999999999887776655544443
No 21
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=99.93 E-value=4.9e-24 Score=203.39 Aligned_cols=189 Identities=21% Similarity=0.300 Sum_probs=140.6
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc----------
Q 019185 111 KLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK---------- 180 (345)
Q Consensus 111 ~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~---------- 180 (345)
++++|++++||+++..+.++.+.|.+++... ..++. .+++++++.++.++++|++|||+|+|+|+
T Consensus 2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~--~~~~~---~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~s 76 (279)
T PRK09573 2 SIKAYFELIRPKNCIGASIGAIIGYLIASNF--KIDLK---GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPS 76 (279)
T ss_pred CHHHHHHHHhHhHHHHHHHHHHHHHHHHccC--CcchH---HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCC
Confidence 3678999999999999999999998888532 23332 25677888999999999999999999998
Q ss_pred ---ChhHHHHhc--------------hhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHHHHHHh
Q 019185 181 ---SLAMGVMLR--------------SPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLHV 243 (345)
Q Consensus 181 ---S~~~al~lg--------------~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~~~~~ 243 (345)
|+++++.++ .+......+++.++.++||. ++||++.++|++++..+|.....|... .
T Consensus 77 G~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~~g~~~-~ 150 (279)
T PRK09573 77 GRISLKEAKIFSITLFIVGLILSIFINIYAFLIALLNSILLYLYAK-----DLKKTGLIGNLIVAYLTGLSFIFGGLA-V 150 (279)
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----HHhcCCcHHHHHHHHHHHHHHHHHHHH-H
Confidence 566664431 11222222456677899995 689999999999988888753344432 1
Q ss_pred hhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHHH
Q 019185 244 QKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALA 319 (345)
Q Consensus 244 ~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il~ 319 (345)
+ . . ...++..+..++|+.++++.||++|+|+|+++|++|+|+++|+|++.+++.....+..+...+.
T Consensus 151 ~-----~--~--~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~ 217 (279)
T PRK09573 151 F-----N--V--LRIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLP 217 (279)
T ss_pred c-----c--c--hHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 1 1233344455678899999999999999999999999999999999998877765555554443
No 22
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=99.92 E-value=1.4e-23 Score=202.52 Aligned_cols=207 Identities=14% Similarity=0.162 Sum_probs=147.4
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc-----
Q 019185 106 DFLTKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK----- 180 (345)
Q Consensus 106 ~~~~~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~----- 180 (345)
+-...+++.++|++||+..+....+.+.|..+|.... .++. .+++++++.+++++++|++|||+|+|+|+
T Consensus 9 ~~~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~--~~~~---~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT 83 (300)
T PRK13106 9 NNTRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGI--PPIS---TLILIFLALFFLRTAGMTNDNLADLEIDAKNPRT 83 (300)
T ss_pred hhhHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCC--CCHH---HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCcc
Confidence 3356689999999999999999988888988885432 2332 24567788899999999999999999997
Q ss_pred ----------ChhHHHHhc-------------hhHHHHH-HHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhH
Q 019185 181 ----------SLAMGVMLR-------------SPPLVIA-LVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNV 236 (345)
Q Consensus 181 ----------S~~~al~lg-------------~~~l~~~-l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~ 236 (345)
|+++|+++. ..+.... ..++.++...|+ .+||++.++++++++.+|....
T Consensus 84 ~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~~~~~~~~~Y~------~~KR~t~~~~~~lg~~~~~~~~ 157 (300)
T PRK13106 84 KNRPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSPIVALIAMSYP------YMKRYTAFANYHLASIQGLAVF 157 (300)
T ss_pred CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh------HHhcCCcchHHHHHHHHHHHHH
Confidence 566765431 0111111 123445567788 3799999999999888887544
Q ss_pred HHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHH
Q 019185 237 LPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASA 316 (345)
Q Consensus 237 lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~ 316 (345)
.|.....+..............++..+...+|+.+++++|+++|+|+|+++|+||+|+++| +++.+++..+..+..++.
T Consensus 158 ~G~~a~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~ 236 (300)
T PRK13106 158 SGAVAVLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLD 236 (300)
T ss_pred HHHHHHcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHH
Confidence 4554322210000000011223334445678999999999999999999999999999999 889998888887777777
Q ss_pred HHHHHHhh
Q 019185 317 ALAGVFSP 324 (345)
Q Consensus 317 il~~~~~~ 324 (345)
.+.+....
T Consensus 237 ~~~~~~~~ 244 (300)
T PRK13106 237 LLGDLYYG 244 (300)
T ss_pred HHHHHHhC
Confidence 77766553
No 23
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.92 E-value=3.3e-23 Score=198.36 Aligned_cols=198 Identities=16% Similarity=0.142 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHhccchHH---HHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc----
Q 019185 108 LTKKLDAFYRLSRPYAWT---SIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK---- 180 (345)
Q Consensus 108 ~~~~L~a~~~l~RP~t~~---~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~---- 180 (345)
++.++++|++++||+... ...+|.+.|.++|.... ..++. ..++++++.+++++++|++|||+|+|+|+
T Consensus 3 ~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~~---~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~R 78 (285)
T PRK12847 3 ILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDIS---LLVLFIIGSVLMRSAGCIINDIFDRKIDKHVAR 78 (285)
T ss_pred hHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcHH---HHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCc
Confidence 355799999999998655 46789999988885432 23333 35677888899999999999999999997
Q ss_pred -----------ChhHHHHhc--------------hhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHh
Q 019185 181 -----------SLAMGVMLR--------------SPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINN 235 (345)
Q Consensus 181 -----------S~~~al~lg--------------~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~ 235 (345)
|++++..++ .+......+++.+..+.||. .||++.+++++.++.++...
T Consensus 79 t~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~ 152 (285)
T PRK12847 79 TKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLSFIAVILIVLYPL------MKRFFYWPQLFLGFTFNMGI 152 (285)
T ss_pred ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc------cccCCcccHHHHHHHHHHHH
Confidence 455554331 12222233456677889983 68888889988877777532
Q ss_pred HHHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHH
Q 019185 236 VLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYAS 315 (345)
Q Consensus 236 ~lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~ 315 (345)
..++.... +.. +...++..+...+|+.+.+++++++|+|+|+++|++|+|+++|+|++.++........+++
T Consensus 153 l~~~~a~~------g~~--~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~ 224 (285)
T PRK12847 153 LMAFAAVQ------NQL--DIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILW 224 (285)
T ss_pred HHHHHHHc------CCC--cHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHH
Confidence 23433321 222 2345556667789999999999999999999999999999999999999988887777776
Q ss_pred HHHHHHHh
Q 019185 316 AALAGVFS 323 (345)
Q Consensus 316 ~il~~~~~ 323 (345)
.++.....
T Consensus 225 ~~~~~~~~ 232 (285)
T PRK12847 225 LILGIISS 232 (285)
T ss_pred HHHHHHhc
Confidence 66555443
No 24
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=99.92 E-value=1.6e-23 Score=200.20 Aligned_cols=197 Identities=16% Similarity=0.178 Sum_probs=144.8
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc----------
Q 019185 111 KLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK---------- 180 (345)
Q Consensus 111 ~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~---------- 180 (345)
++|.+++++||+...........|.++|... ..++. .+++++++.+++++++|++|||+|+|+|+
T Consensus 1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~~--~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl 75 (282)
T TIGR01475 1 KFKDILELIKFEHTVFALPFAYAGALLAAKG--LPGLK---TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPL 75 (282)
T ss_pred CHHHHHHHHccccHHHHHHHHHHHHHHhcCC--CCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCC
Confidence 3689999999999999988877788887543 23332 25677889999999999999999999998
Q ss_pred -----ChhHHHHhc-------------hhHHHH-HHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHHHHH
Q 019185 181 -----SLAMGVMLR-------------SPPLVI-ALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFL 241 (345)
Q Consensus 181 -----S~~~al~lg-------------~~~l~~-~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~~~ 241 (345)
|+++|..++ ..+... ...++.++.+.|+ .+||++.+++++.+..++.....|+..
T Consensus 76 ~sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~Y~------~~Kr~~~~~~~~~g~~~~~~~~~g~~a 149 (282)
T TIGR01475 76 VSGLISKKEARTMIILSLALFLSASYFLNPLAFILSPLVLLVLIIYP------YTKRFTFLCHYVLGSTYGLAPLAGWVA 149 (282)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh------hHhccccccHHHHHHHHHHHHHHHHHH
Confidence 456664431 011111 1234556678898 379999999999888777643344433
Q ss_pred HhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHHHHH
Q 019185 242 HVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAGV 321 (345)
Q Consensus 242 ~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il~~~ 321 (345)
.. | ........++..+...+|+.+++++||++|+|+|+++|++|+|+++|+|++.++......+.+++.++.+.
T Consensus 150 ~~-----g-~~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~ 223 (282)
T TIGR01475 150 VI-----G-TISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGF 223 (282)
T ss_pred Hh-----C-CccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1 11211234455667778999999999999999999999999999999999999988888788877777666
Q ss_pred Hhh
Q 019185 322 FSP 324 (345)
Q Consensus 322 ~~~ 324 (345)
...
T Consensus 224 ~~~ 226 (282)
T TIGR01475 224 YVG 226 (282)
T ss_pred Hhh
Confidence 554
No 25
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=99.91 E-value=1.2e-22 Score=195.42 Aligned_cols=200 Identities=21% Similarity=0.173 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHhhccc---CCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc---
Q 019185 107 FLTKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQS---LADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK--- 180 (345)
Q Consensus 107 ~~~~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~---~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~--- 180 (345)
+.++++|+++|++||+..+.+....+.|.++|... ...+++. .+++++++.+++++++|++|||+|+|+|+
T Consensus 3 ~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~ 79 (291)
T PRK12874 3 KFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFK---LLILGILAAVSARNFAMAFNRLVDRDIDKDNP 79 (291)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHH---HHHHHHHHHHHHHHHHHHHHhhhhhccccCCC
Confidence 45678999999999999999999888888887521 1124443 35677888889999999999999999997
Q ss_pred ------------ChhHHHHhc-------------hhHHHHHH-HHHHHHhHhccCCcccccccccCcchhHHHHHHHHHH
Q 019185 181 ------------SLAMGVMLR-------------SPPLVIAL-VLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGIN 234 (345)
Q Consensus 181 ------------S~~~al~lg-------------~~~l~~~l-~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i 234 (345)
|+++++.++ ..+....+ +..++....|+. +||++.++++..++.+|..
T Consensus 80 RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~Y~~------~KR~t~~~~~~~g~~~~~~ 153 (291)
T PRK12874 80 RTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLSFPFLIVLGGYSY------FKRFSSLAHLVLGLSLGLA 153 (291)
T ss_pred CCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh------hcccccccHHHHHHHHHHH
Confidence 556664431 01111111 234556778883 7999999999988887764
Q ss_pred hHHHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHH
Q 019185 235 NVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYA 314 (345)
Q Consensus 235 ~~lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl 314 (345)
...|+... ++... ...+++.+..++|+.+++++++++|+|+|+++|++|+|+++|++++.++.........+
T Consensus 154 ~l~G~~av------~g~~~--~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~ 225 (291)
T PRK12874 154 PIAGVVAV------LGEIP--LWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVL 225 (291)
T ss_pred HHHHHHHH------cCCCc--HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHH
Confidence 33454432 12222 23344556667999999999999999999999999999999999998877666555555
Q ss_pred HHHHHHHHh
Q 019185 315 SAALAGVFS 323 (345)
Q Consensus 315 ~~il~~~~~ 323 (345)
..++.+...
T Consensus 226 ~~~~~~~~~ 234 (291)
T PRK12874 226 FWLLFVWCA 234 (291)
T ss_pred HHHHHHHHh
Confidence 555444443
No 26
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=99.91 E-value=1.7e-22 Score=194.24 Aligned_cols=197 Identities=17% Similarity=0.178 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc-------
Q 019185 108 LTKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK------- 180 (345)
Q Consensus 108 ~~~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~------- 180 (345)
..++++.++|++||+.......+.+.|..+|....+ ++. .++.++++.+++++++|++|||+|+|+|+
T Consensus 4 ~~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~--~~~---~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~ 78 (291)
T PRK12886 4 LLTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLP--GAS---QLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAG 78 (291)
T ss_pred hHHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCC
Confidence 456899999999999999998888889888854322 222 24567788899999999999999999997
Q ss_pred --------ChhHHHHhc-------------hhHHHH-HHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHH
Q 019185 181 --------SLAMGVMLR-------------SPPLVI-ALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLP 238 (345)
Q Consensus 181 --------S~~~al~lg-------------~~~l~~-~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg 238 (345)
|+++|..+. ..+... ..+++.+....|+. .||++.++++..+++++.. +++
T Consensus 79 RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~Y~~------~Kr~t~~~~~~~g~~~~~~-~l~ 151 (291)
T PRK12886 79 RAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSPPALFFLLLYSY------CKRFTALAHVVLGFCLALA-PLG 151 (291)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hhccccccHHHHHHHHHHH-HHH
Confidence 456664331 112211 22245566788993 6999999999988777663 443
Q ss_pred HHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHH
Q 019185 239 YFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAAL 318 (345)
Q Consensus 239 ~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il 318 (345)
.|.+. ++.. +...++..+...+|+.+.++.++++|+|+|+++|+||+|+++|++++.++......+.+++.++
T Consensus 152 g~~a~-----~g~~--~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~ 224 (291)
T PRK12886 152 AWIAI-----RGTI--ELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFA 224 (291)
T ss_pred HHHHH-----cCCC--cHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHH
Confidence 33322 1122 2234555666778999999999999999999999999999999999999887776777776666
Q ss_pred HHHHh
Q 019185 319 AGVFS 323 (345)
Q Consensus 319 ~~~~~ 323 (345)
.+...
T Consensus 225 ~~~~~ 229 (291)
T PRK12886 225 LGISA 229 (291)
T ss_pred HHHHh
Confidence 55543
No 27
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=99.91 E-value=1.4e-22 Score=193.04 Aligned_cols=178 Identities=21% Similarity=0.289 Sum_probs=128.2
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc-----------
Q 019185 112 LDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK----------- 180 (345)
Q Consensus 112 L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~----------- 180 (345)
+|+|++++||+++..+.++.+.|.+++.+..+ ++. ..+.++++.++.++++|++|||+|+|+|+
T Consensus 3 l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~--~~~---~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG 77 (277)
T PRK12883 3 LKAFIEITRPHNCILAGIVGILGSLVALGGIP--PIK---TLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRG 77 (277)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCC--cHH---HHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCCC
Confidence 67899999999999999999999888754221 122 13456677788899999999999999997
Q ss_pred --ChhHHHHh-------c-------hhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHHHHHHhh
Q 019185 181 --SLAMGVML-------R-------SPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLHVQ 244 (345)
Q Consensus 181 --S~~~al~l-------g-------~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~~~~~~ 244 (345)
|++++..+ + ++......+++.+++++|+. ++|+++.++++.++..+|.....|... .
T Consensus 78 ~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~~~~~~~~~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g~~a-~- 150 (277)
T PRK12883 78 AMSRKAALYYSLLLFAVGLALAYLINIEAFLFALGAYVLMFLYAW-----KLKPLPFIGNVVVALLTGATPIYGAIA-V- 150 (277)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cccCCcchhhHHHHHHHHHHHHHHHHH-h-
Confidence 45555332 1 12223233456678999996 689999889999988888743233322 1
Q ss_pred hhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHH
Q 019185 245 KYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGIL 309 (345)
Q Consensus 245 ~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll 309 (345)
+ ...+ ..+. ....+++..++++.||++|+|+|+++|++|+|+++|+|++.++.....
T Consensus 151 ----~-~~~~--~~~~-~~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~ 207 (277)
T PRK12883 151 ----G-RIGL--AGYL-AICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFG 207 (277)
T ss_pred ----c-cccH--HHHH-HHHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHHH
Confidence 1 1111 1222 223456678899999999999999999999999999999998766543
No 28
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.91 E-value=1.1e-22 Score=193.93 Aligned_cols=208 Identities=26% Similarity=0.319 Sum_probs=151.2
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc---------
Q 019185 110 KKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK--------- 180 (345)
Q Consensus 110 ~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~--------- 180 (345)
+.+++++++.|+.+...+......+...... .++. . ....+++.++.+.++|++|||+|+|+|+
T Consensus 2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~--~~~~-~----~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~ 74 (285)
T PRK12872 2 KLLFAFLKLFRYGNLLIAALGQSLVYMASLL--LGLP-I----SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF 74 (285)
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHHHHH--HcCh-h----HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence 4678999999999999988887766432111 1111 1 2355677889999999999999999997
Q ss_pred ChhHH----HHh---------------chhHHHHHHHHHHHHhHhccCCcccc-cccccCcchhHHHHHHHHHHhHHHHH
Q 019185 181 SLAMG----VML---------------RSPPLVIALVLRCILGAAYSIDLPLL-RWKASPLMAAVAIVIGNGINNVLPYF 240 (345)
Q Consensus 181 S~~~a----l~l---------------g~~~l~~~l~l~~~l~~~YS~~~pP~-rlKr~pllg~L~v~~~~g~i~~lg~~ 240 (345)
|++++ +++ .++...+..+++.++++.||. ||+ |+||.|.+++++++..||....++.+
T Consensus 75 s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~ 152 (285)
T PRK12872 75 SETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFIIPLILGILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILGV 152 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHHH
Confidence 22222 110 123334444567788999996 665 68999999999999999986454333
Q ss_pred HHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHHHH
Q 019185 241 LHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAG 320 (345)
Q Consensus 241 ~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il~~ 320 (345)
... +.. ++...++..++.+++.+.+++.+|++|+|+|+++|++|+|+++|+|++++++..+..++++..+...
T Consensus 153 ~~~-----~~~--~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~ 225 (285)
T PRK12872 153 YYY-----QLT--IFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGV 225 (285)
T ss_pred Hhc-----ccc--cchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 111 2233455566677788999999999999999999999999999999999999999999999988887
Q ss_pred HHhhHHHHHHHHH
Q 019185 321 VFSPILLCKLVTM 333 (345)
Q Consensus 321 ~~~~~~~~~~~~~ 333 (345)
.....+|...+.+
T Consensus 226 ~~~~~~~~~~~~~ 238 (285)
T PRK12872 226 YTGLLPLLLLVLL 238 (285)
T ss_pred HHhHhhHHHHHHH
Confidence 7766666544433
No 29
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=99.90 E-value=2.7e-22 Score=192.37 Aligned_cols=193 Identities=23% Similarity=0.335 Sum_probs=144.8
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc--------
Q 019185 109 TKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK-------- 180 (345)
Q Consensus 109 ~~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~-------- 180 (345)
.+.++.++|..||.++.....+...|..++.. .+.. +...++++++++++++++|++||++|+|+|+
T Consensus 10 ~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~---~~~~--~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~R 84 (289)
T COG0382 10 LKALLKLLRLDRPIFNLLLLLPALLGLLLAAS---GLPS--LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNR 84 (289)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHc---CCch--HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCC
Confidence 45667788888888888899999988888762 2222 2346788889999999999999999999998
Q ss_pred -------ChhHHHHhc-------------hhH-HHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHHH
Q 019185 181 -------SLAMGVMLR-------------SPP-LVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPY 239 (345)
Q Consensus 181 -------S~~~al~lg-------------~~~-l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~ 239 (345)
|+++|..+. ..+ .+...+++.++.++|. ++||.+.+++++++..++.....|.
T Consensus 85 Pl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~~~~~~l~~~Y~------~~Kr~~~~~~~~lg~~~~~~~~~g~ 158 (289)
T COG0382 85 PLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSLAALVLALAYP------FLKRFTFLPQLVLGLAFGLGALAGA 158 (289)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------HhhcCCchHHHHHHHHHHHHHHHHH
Confidence 556664431 112 2233346788999994 7999999999999888887645555
Q ss_pred HHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHHH
Q 019185 240 FLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALA 319 (345)
Q Consensus 240 ~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il~ 319 (345)
.... +. .....+++.++..+|+.+++++||++|+|+|+++|++|+|+.+|++++.+++..... ..+.....
T Consensus 159 ~a~~------~~--~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~~-~~~~~~~~ 229 (289)
T COG0382 159 AAVG------GS--LPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLLL-ASALLVLL 229 (289)
T ss_pred HHHh------Cc--cchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHHH-HHHHHHHH
Confidence 4321 11 123456667788899999999999999999999999999999999999999888873 33333333
Q ss_pred HH
Q 019185 320 GV 321 (345)
Q Consensus 320 ~~ 321 (345)
+.
T Consensus 230 ~~ 231 (289)
T COG0382 230 GL 231 (289)
T ss_pred HH
Confidence 33
No 30
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.90 E-value=2.3e-22 Score=193.23 Aligned_cols=182 Identities=16% Similarity=0.147 Sum_probs=130.9
Q ss_pred HHHHHHHHHHhccchHHHHH---HHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc-----
Q 019185 109 TKKLDAFYRLSRPYAWTSII---VGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK----- 180 (345)
Q Consensus 109 ~~~L~a~~~l~RP~t~~~~~---l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~----- 180 (345)
..++++|++++||++..... +|.+.|..+|... ..++. .++.++++.+++++++|++|||+|+|+|+
T Consensus 6 ~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~--~~~~~---~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt 80 (290)
T PRK12870 6 EPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHG--LPPLP---LVGIIILGALATSAAGCVVNDLWDRDIDPQVERT 80 (290)
T ss_pred chhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccC--CCCHH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCcc
Confidence 34889999999988865554 6888888888543 23332 24567788889999999999999999996
Q ss_pred ----------ChhHHHHhc-------------hhHHHH-HHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhH
Q 019185 181 ----------SLAMGVMLR-------------SPPLVI-ALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNV 236 (345)
Q Consensus 181 ----------S~~~al~lg-------------~~~l~~-~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~ 236 (345)
|+++|+.++ ..+... ..+.+.++.+.|+. .||++.+++++.++.++..+.
T Consensus 81 ~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~l 154 (290)
T PRK12870 81 RFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCVAAVPVIFLYPL------AKRVFPVPQLVLAIAWGFAVL 154 (290)
T ss_pred cCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh------hhhccccceeeehHHHHhHHH
Confidence 556664431 012211 22345567788983 688888889888777776433
Q ss_pred HHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHH
Q 019185 237 LPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGIL 309 (345)
Q Consensus 237 lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll 309 (345)
.|+.... | .. +...++..+...+|+.+.+++++++|+|+|+++|++|+|+++|++++.+++....
T Consensus 155 ~g~~a~~-----g-~~--~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~~~ 219 (290)
T PRK12870 155 ISWSAVT-----G-HL--DLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFA 219 (290)
T ss_pred HHHHHHc-----C-CC--CHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHHHH
Confidence 3443321 2 22 2234555667789999999999999999999999999999999999988776433
No 31
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.90 E-value=6.8e-22 Score=192.03 Aligned_cols=192 Identities=17% Similarity=0.129 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHh---ccchHHHHHHHHHHHHHhhcccCC---CCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc-
Q 019185 108 LTKKLDAFYRLS---RPYAWTSIIVGILSSSLLPIQSLA---DLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK- 180 (345)
Q Consensus 108 ~~~~L~a~~~l~---RP~t~~~~~l~~l~G~llA~~~~~---~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~- 180 (345)
...+++.|++++ ||++.....+|.+.|.++|..... ..++. .+++++++.+++++++|++|||+|+|+|+
T Consensus 26 ~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~ 102 (314)
T PRK12878 26 LPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRDIDAK 102 (314)
T ss_pred cchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 446889999999 999999999999999999865311 33332 25677889999999999999999999996
Q ss_pred --------------ChhHHHHhc--------------hhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHH
Q 019185 181 --------------SLAMGVMLR--------------SPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNG 232 (345)
Q Consensus 181 --------------S~~~al~lg--------------~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g 232 (345)
|+++++.++ ++......+++.+..+.|+. .||+..++++..++.++
T Consensus 103 ~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~~~~~~~~~~Y~~------~KR~t~~~~~~~Gl~~~ 176 (314)
T PRK12878 103 VARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALGIASLAIVAAYPF------MKRITWWPQFFLGLAFS 176 (314)
T ss_pred CCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH------HHhcCCcchHHHHHHHH
Confidence 456654331 12222233456777889983 68888777777665555
Q ss_pred HHhHHHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHH
Q 019185 233 INNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMA 312 (345)
Q Consensus 233 ~i~~lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~a 312 (345)
.....|++... | ... ...+++.+...+|+.+.+.+++++|+|+|+++|++|+|+++|++++.+++.......
T Consensus 177 ~~~l~g~~a~~-----g-~~~--~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~ 248 (314)
T PRK12878 177 WGALMGWAAHF-----G-SLS--LAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAV 248 (314)
T ss_pred HHHHHHHHHHh-----C-CCc--hHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHH
Confidence 43224544321 2 222 233444556678999999999999999999999999999999999998886665545
Q ss_pred HHHH
Q 019185 313 YASA 316 (345)
Q Consensus 313 yl~~ 316 (345)
.++.
T Consensus 249 ~~~~ 252 (314)
T PRK12878 249 LLMG 252 (314)
T ss_pred HHHH
Confidence 4333
No 32
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=99.90 E-value=6.7e-22 Score=189.60 Aligned_cols=196 Identities=17% Similarity=0.172 Sum_probs=139.6
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhhccc-CCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc---------
Q 019185 111 KLDAFYRLSRPYAWTSIIVGILSSSLLPIQS-LADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK--------- 180 (345)
Q Consensus 111 ~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~-~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~--------- 180 (345)
+++.++|++||++.+.+....+.|.+.+... .+.+++. .+++.+++.+++++++|++|||+|+|+|+
T Consensus 1 ~~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RP 77 (284)
T PRK12888 1 RVRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWA---DLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRE 77 (284)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCC
Confidence 3679999999988888766666666665321 1234443 25677888999999999999999999997
Q ss_pred ------ChhHHHHhch-------------hHHHH-HHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHHHH
Q 019185 181 ------SLAMGVMLRS-------------PPLVI-ALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYF 240 (345)
Q Consensus 181 ------S~~~al~lg~-------------~~l~~-~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~~ 240 (345)
|++++++++. .+... ...++++..+.|+ ..||++.++++..+++++.. |++.|
T Consensus 78 L~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~~~~~~~~~~Y~------~~Kr~t~~~~~~lg~~~~~~-~l~g~ 150 (284)
T PRK12888 78 LVTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALAPLAVAPLVVYP------YAKRFTNFPHAILGLAQAVG-PVGAW 150 (284)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------HhhcccchhhHHHHHHHHHH-HHHHH
Confidence 5566654310 12211 1124455667887 36999999999988777664 43333
Q ss_pred HHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHHHH
Q 019185 241 LHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAG 320 (345)
Q Consensus 241 ~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il~~ 320 (345)
.+.. | .. +...++..+..++|+.+.+++++++|+|+|+++|+||+|+++|+|++.+++..+..+.+++..+.+
T Consensus 151 ~a~~----g-~~--~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~ 223 (284)
T PRK12888 151 IAVT----G-TW--SWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFG 223 (284)
T ss_pred HHHc----C-CC--CHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHH
Confidence 3221 2 22 224455666778899999999999999999999999999999999999888777767776666666
Q ss_pred HHh
Q 019185 321 VFS 323 (345)
Q Consensus 321 ~~~ 323 (345)
...
T Consensus 224 ~~~ 226 (284)
T PRK12888 224 LAV 226 (284)
T ss_pred HHh
Confidence 554
No 33
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=99.89 E-value=1.3e-21 Score=187.71 Aligned_cols=197 Identities=15% Similarity=0.165 Sum_probs=139.8
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc----------
Q 019185 111 KLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK---------- 180 (345)
Q Consensus 111 ~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~---------- 180 (345)
++|.++|++||+....+....+.|.++|.+. ..++. .++..+++.+++.+++|++||++|+|+|+
T Consensus 2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~--~~~~~---~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL 76 (286)
T PRK12895 2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGH--YIHPI---KILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL 76 (286)
T ss_pred cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCC--CCCHH---HHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence 4789999999999999888888898888532 12222 23455667889999999999999999998
Q ss_pred -----ChhHHHHhc-------------hhHHHHHH-HHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHHHHH
Q 019185 181 -----SLAMGVMLR-------------SPPLVIAL-VLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFL 241 (345)
Q Consensus 181 -----S~~~al~lg-------------~~~l~~~l-~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~~~ 241 (345)
|+++|+++. ..+....+ .+...+...|+ .+||++.++++.++...|.. ++..|.
T Consensus 77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~~~~~l~~~yp------~~KR~t~~~~~~lG~~~g~~-~l~g~~ 149 (286)
T PRK12895 77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSPIVIFLFIIDP------FLKRYTAWRHIYMGSIIGLG-VLAGYL 149 (286)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------HHHhCccccHHHHHHHHHhH-HHHHHH
Confidence 566775541 01222222 23444445555 47999999999888888853 433333
Q ss_pred HhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHHHHH
Q 019185 242 HVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAGV 321 (345)
Q Consensus 242 ~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il~~~ 321 (345)
+. ++...+....+++.+...+|+.+.+++++++|+|+|++.|+||+|+++|++++.+++..+..++..+..+.+.
T Consensus 150 Av-----~g~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~ 224 (286)
T PRK12895 150 AV-----IPAFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGI 224 (286)
T ss_pred HH-----cCCCCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 22 1222221223345566778999999999999999999999999999999999998876666666666666665
Q ss_pred Hhh
Q 019185 322 FSP 324 (345)
Q Consensus 322 ~~~ 324 (345)
...
T Consensus 225 ~~~ 227 (286)
T PRK12895 225 YIR 227 (286)
T ss_pred HHh
Confidence 444
No 34
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=99.89 E-value=1.3e-21 Score=187.14 Aligned_cols=182 Identities=17% Similarity=0.161 Sum_probs=129.3
Q ss_pred HHHHHHHHHhc---cchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc------
Q 019185 110 KKLDAFYRLSR---PYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK------ 180 (345)
Q Consensus 110 ~~L~a~~~l~R---P~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~------ 180 (345)
++++++++++| |.......+|.+.|..+|.... .++. .+++++++.+++++++|++|||+|+|+|+
T Consensus 3 ~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~--~~~~---~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~ 77 (282)
T PRK12848 3 NRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGI--PDLW---VLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRTK 77 (282)
T ss_pred hhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCC--CCHH---HHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCCC
Confidence 36889999998 5555666678888888875432 2222 24566778889999999999999999996
Q ss_pred ---------ChhHHHHhc-------------hhHH-HHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHH
Q 019185 181 ---------SLAMGVMLR-------------SPPL-VIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVL 237 (345)
Q Consensus 181 ---------S~~~al~lg-------------~~~l-~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~l 237 (345)
|+++|..++ ..+. ....+++.+..+.|+. .||++.++++..++.+|...++
T Consensus 78 ~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~g~~~~~ 151 (282)
T PRK12848 78 NRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLSVAALALAWIYPF------MKRYTHLPQVVLGAAFGWGIPM 151 (282)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh------HHhcCcccHHHHHHHHHHHHHH
Confidence 556664431 0111 2222345666788962 5888888999887777765445
Q ss_pred HHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHH
Q 019185 238 PYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILL 310 (345)
Q Consensus 238 g~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~ 310 (345)
|+.... +.. +...++..+...+|+...+..++++|+|+|+++|++|+|+++|+|++.+.......
T Consensus 152 g~~a~~------~~~--~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~ 216 (282)
T PRK12848 152 AFAAVQ------GSV--PLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLA 216 (282)
T ss_pred HHHHHh------CCC--cHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHHHH
Confidence 544321 222 22345556667789999999999999999999999999999999998877644433
No 35
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=99.89 E-value=2.3e-21 Score=185.50 Aligned_cols=184 Identities=17% Similarity=0.180 Sum_probs=128.6
Q ss_pred HHHHHhccchHHHHHHHHHHHHHhhcccCCCC-ChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc------------
Q 019185 114 AFYRLSRPYAWTSIIVGILSSSLLPIQSLADL-TPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK------------ 180 (345)
Q Consensus 114 a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~-~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~------------ 180 (345)
.++|+.||..+....++.+.|..+|... +.. ++. ..+..+++.+++++++|++|||+|+|+|+
T Consensus 6 ~l~R~~kp~~~~l~~~~~~~g~~la~~~-~~~~~~~---~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~s 81 (281)
T TIGR01474 6 KLMRADKPIGTLLLLWPCLWSLLLAAQA-GGIPPLY---LLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLAS 81 (281)
T ss_pred HHHccccHHHHHHHHHHHHHHHHHHhcc-cCCCcHH---HHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCC
Confidence 4566677888888899999998888542 122 222 24556677789999999999999999996
Q ss_pred ---ChhHHHHhc--------------hhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHHHHHHh
Q 019185 181 ---SLAMGVMLR--------------SPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLHV 243 (345)
Q Consensus 181 ---S~~~al~lg--------------~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~~~~~ 243 (345)
|++++..++ .+......+++.++.+.|+. .||++.++++..++.++.....|++...
T Consensus 82 G~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~~a~~ 155 (281)
T TIGR01474 82 GAVSVRQAILFLLVQLLVALGVLLQLNPLTILLGVASLALVATYPF------MKRITYWPQLVLGLAFGWGALMGWAAVT 155 (281)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhch------hcccccccHHHHHHHHHHHHHHHHHHHc
Confidence 445554331 11222223456778999983 7999999999887777764334544321
Q ss_pred hhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHH
Q 019185 244 QKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYAS 315 (345)
Q Consensus 244 ~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~ 315 (345)
| . .+...++..+...+|+.+.+++++++|+|+|+++|+||+|+++|+|++.+.......+.++.
T Consensus 156 -----g-~--~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~ 219 (281)
T TIGR01474 156 -----G-D--LSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILLL 219 (281)
T ss_pred -----C-C--CcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHHHHH
Confidence 2 2 22234444556678999999999999999999999999999999998766555444434333
No 36
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=99.88 E-value=4.3e-21 Score=183.42 Aligned_cols=190 Identities=13% Similarity=0.118 Sum_probs=133.7
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc----------
Q 019185 111 KLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK---------- 180 (345)
Q Consensus 111 ~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~---------- 180 (345)
++|++++++||++.....++.+.|.++|.+. ..++.. ++..+++.+++++++|++|||+|+|+|+
T Consensus 1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~--~~~~~~---~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl 75 (279)
T PRK12869 1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKH--GVSWLP---LIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT 75 (279)
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHhccC--CCCHHH---HHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence 4689999999999999999999999888532 234332 4567788889999999999999999998
Q ss_pred -----ChhHHHHhc-----------h---hHHH-HH-HHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHHH
Q 019185 181 -----SLAMGVMLR-----------S---PPLV-IA-LVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPY 239 (345)
Q Consensus 181 -----S~~~al~lg-----------~---~~l~-~~-l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~ 239 (345)
|++++..++ . .+.. .. .+...+..+.||. ++||+++. +..++...|...+++.
T Consensus 76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~-----~lKr~~~~-~~~v~~~~g~~~~l~g 149 (279)
T PRK12869 76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI-----WLKPRTWL-NIVIGGFAGNAAALAG 149 (279)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-----ccccCChH-HHHHHHHHHHHHHHHH
Confidence 556664331 1 1121 11 1233456778885 68999985 5555555555445544
Q ss_pred HHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHH
Q 019185 240 FLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAAL 318 (345)
Q Consensus 240 ~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il 318 (345)
|.+.. +. .+...++..+..++|+.++....+++|.|+|+++|+||+|+++|+|++.+.......+..+...+
T Consensus 150 ~~a~~-----g~--~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~ 221 (279)
T PRK12869 150 YASGT-----GS--LDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILL 221 (279)
T ss_pred HHHHh-----CC--CCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHH
Confidence 44221 12 22344555667778888888888889999999999999999999999998776665544444333
No 37
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=99.88 E-value=4.1e-21 Score=185.00 Aligned_cols=193 Identities=16% Similarity=0.111 Sum_probs=135.6
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc---------
Q 019185 110 KKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK--------- 180 (345)
Q Consensus 110 ~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~--------- 180 (345)
.+++++++++||+++....++.+.|.++|... .+++. .+++++++.+++++++|++|||+|+|+|+
T Consensus 8 ~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~--~~~~~---~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rp 82 (296)
T PRK04375 8 ATLKDYLALTKPRVISLNLFTALGGMLLAPPG--VPPLL---LLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRP 82 (296)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CCCHH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCC
Confidence 48999999999999999999999999998532 34443 25677888999999999999999999998
Q ss_pred ------ChhHHHHhc-------h-------hHHHHHH-HHH-HHHhHhccCCcccccccccCcchhHHHHHHHHHHhHH-
Q 019185 181 ------SLAMGVMLR-------S-------PPLVIAL-VLR-CILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVL- 237 (345)
Q Consensus 181 ------S~~~al~lg-------~-------~~l~~~l-~l~-~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~l- 237 (345)
|++++..++ . .+....+ +++ ++..+.|+. ++||++. ++..++...|...++
T Consensus 83 l~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~-----~lKr~~~-~~~~v~~~~g~~~~l~ 156 (296)
T PRK04375 83 LVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL-----WLKRRTP-QNIVIGGAAGAMPPLI 156 (296)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-----chhcCCc-cchHHHHHHHHhHHHH
Confidence 556654331 0 0111111 223 234668884 6899996 676665554443333
Q ss_pred HHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHH
Q 019185 238 PYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAA 317 (345)
Q Consensus 238 g~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~i 317 (345)
|++.. .+.. +...+++.+..++|+.+.+..+.++|+|+|+++|+||+|+++|++++.+.+.....+.....+
T Consensus 157 g~~a~------~g~~--~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~ 228 (296)
T PRK04375 157 GWAAV------TGSL--SWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSL 228 (296)
T ss_pred HHHHh------CCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHHHH
Confidence 44332 1122 233455566777899999999999999999999999999999999988876665554444444
Q ss_pred HHHH
Q 019185 318 LAGV 321 (345)
Q Consensus 318 l~~~ 321 (345)
+...
T Consensus 229 ~~~~ 232 (296)
T PRK04375 229 LPVL 232 (296)
T ss_pred HHHH
Confidence 3333
No 38
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=99.88 E-value=5.7e-21 Score=183.58 Aligned_cols=196 Identities=17% Similarity=0.105 Sum_probs=132.5
Q ss_pred HHHHHHHHhc---cchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc-------
Q 019185 111 KLDAFYRLSR---PYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK------- 180 (345)
Q Consensus 111 ~L~a~~~l~R---P~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~------- 180 (345)
+++.|+|++| |.......+|++.|..++.......++. .+++++++.+++++++|++||++|+|+|+
T Consensus 5 ~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~---~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~ 81 (289)
T PLN02809 5 SLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLK---MLALFGCGALLLRGAGCTINDLLDRDIDKKVERTKL 81 (289)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHH---HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCCCCC
Confidence 5666777666 5556667778887777764211112232 24567888899999999999999999997
Q ss_pred --------ChhHHHHhc-------------hhHHHH-HHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHH
Q 019185 181 --------SLAMGVMLR-------------SPPLVI-ALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLP 238 (345)
Q Consensus 181 --------S~~~al~lg-------------~~~l~~-~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg 238 (345)
|+++|+.+. ..+... ...++.++.+.|+. +||++.++++..++.++.....|
T Consensus 82 RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~l~g 155 (289)
T PLN02809 82 RPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILGASSLLLVFTYPL------MKRFTFWPQAFLGLTFNWGALLG 155 (289)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH------HHhcCcchHHHHHHHHHHHHHHH
Confidence 556665431 112222 22356677888983 89999999998777666532234
Q ss_pred HHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHH
Q 019185 239 YFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAAL 318 (345)
Q Consensus 239 ~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il 318 (345)
+.... | .... ...+.+.+...+|+.+.+++++++|+|+|+++|++|+|+++|++...+++. +..+.+..+..
T Consensus 156 ~~av~-----g-~~~~-~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~-~~~~~~~~l~~ 227 (289)
T PLN02809 156 WAAVK-----G-SLDP-AVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTG-FGAASIGGLAL 227 (289)
T ss_pred HHHHh-----C-CCCh-HHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHH-HHHHHHHHHHH
Confidence 32211 2 1111 122224555668999999999999999999999999999999997777664 55556666666
Q ss_pred HHHHh
Q 019185 319 AGVFS 323 (345)
Q Consensus 319 ~~~~~ 323 (345)
++...
T Consensus 228 ~g~~~ 232 (289)
T PLN02809 228 SGYNA 232 (289)
T ss_pred HHHHh
Confidence 66544
No 39
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=99.88 E-value=1e-20 Score=180.60 Aligned_cols=191 Identities=16% Similarity=0.123 Sum_probs=130.5
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc------------
Q 019185 113 DAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK------------ 180 (345)
Q Consensus 113 ~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~------------ 180 (345)
|++++++||+++..+.++.+.|.++|.... +.++. .+++++++.+++++++|++|||+|+|+|+
T Consensus 1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s 76 (280)
T TIGR01473 1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPP---LLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT 76 (280)
T ss_pred CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHH---HHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence 368999999999999999999999985431 23443 25677888999999999999999999997
Q ss_pred ---ChhHHHHhc---------------hhHHHHHHHHHHH-HhHhccCCcccccccccCcchhHHHHHHHHHHhHHHHHH
Q 019185 181 ---SLAMGVMLR---------------SPPLVIALVLRCI-LGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFL 241 (345)
Q Consensus 181 ---S~~~al~lg---------------~~~l~~~l~l~~~-l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~~~ 241 (345)
|++++..++ .+......+++.+ ..++||. .+||++..+.+ ++...|.+.+++.|.
T Consensus 77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~~~~~~~~~~Yt~-----~lKr~~~~~~~-v~~~~g~~~~l~g~~ 150 (280)
T TIGR01473 77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLGLFGIFFYVIVYTI-----WLKRRTPQNTV-IGGFAGAVPPLIGWA 150 (280)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCh-----hhccCCchhHH-HHHHHHHHHHHHHHH
Confidence 455554321 1111112223443 3788995 47999986554 444555544544443
Q ss_pred HhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHHHH
Q 019185 242 HVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAG 320 (345)
Q Consensus 242 ~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il~~ 320 (345)
+. ++..+ ...+++.+...+|+.........+|+|+|+++|+||+|+++|+|++.+.......+..+...+..
T Consensus 151 a~-----~g~~~--~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~ 222 (280)
T TIGR01473 151 AV-----TGSIS--LGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLA 222 (280)
T ss_pred Hh-----cCCCC--HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 12222 23444555667788887777788999999999999999999999998776665544444444433
No 40
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=99.87 E-value=2.8e-20 Score=180.10 Aligned_cols=183 Identities=15% Similarity=0.205 Sum_probs=131.7
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc--------
Q 019185 109 TKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK-------- 180 (345)
Q Consensus 109 ~~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~-------- 180 (345)
+.+++++++++||+++....++.+.|.++|.. .+.++.. .+.++++.++.++++|++|||+|+|+|+
T Consensus 10 ~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~--~~~~~~~---~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~R 84 (306)
T PRK13362 10 EASLKDYIQVTKPGIIFGNVISVAGGFFLASK--GHVDPVL---MLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNR 84 (306)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcc--CCCCHHH---HHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCC
Confidence 45789999999999999999999999988843 2344432 4566778889999999999999999997
Q ss_pred -------ChhHHHHhc-------h-------hHHHH-HHHHH-HHHhHhccCCcccccccccCcchhHHHHHHHHHHhHH
Q 019185 181 -------SLAMGVMLR-------S-------PPLVI-ALVLR-CILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVL 237 (345)
Q Consensus 181 -------S~~~al~lg-------~-------~~l~~-~l~l~-~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~l 237 (345)
|+++++.++ . .+... ...++ ++..+.||. ++||++..++++.++..+.....
T Consensus 85 PlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~-----~lKr~t~~~~~vgg~~ga~p~l~ 159 (306)
T PRK13362 85 VTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL-----YLKRNSVYGTLVGSLSGAMPPVV 159 (306)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH-----HHhccCcHhHHHHHHHHHHHHHH
Confidence 455664431 0 01111 11122 235678984 68999998888776655543223
Q ss_pred HHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHH
Q 019185 238 PYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGIL 309 (345)
Q Consensus 238 g~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll 309 (345)
|+... ++.. +...+++.+..++|+.+.....++.|+|+|+++|++|+|+++|+|++.+......
T Consensus 160 G~~a~------~g~~--~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~~~~ 223 (306)
T PRK13362 160 GYCAV------TGQF--DAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIVLYI 223 (306)
T ss_pred HHHHH------cCCC--cHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHHHHH
Confidence 44432 2222 2245556677778999999999999999999999999999999999987554433
No 41
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.86 E-value=4.8e-20 Score=177.82 Aligned_cols=192 Identities=17% Similarity=0.198 Sum_probs=119.5
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc---------
Q 019185 110 KKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK--------- 180 (345)
Q Consensus 110 ~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~--------- 180 (345)
++++.|++++||+++.....++..|..+|....+.+++.. .++.++++.++..++|++|||+|+|+|+
T Consensus 3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~---~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r 79 (297)
T PRK12871 3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWEL---TIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTR 79 (297)
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHH---HHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhc
Confidence 4688999999999999999998888888742212345432 2323344445557779999999998873
Q ss_pred ---------------ChhHHHHh-------c-----------hhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHH
Q 019185 181 ---------------SLAMGVML-------R-----------SPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAI 227 (345)
Q Consensus 181 ---------------S~~~al~l-------g-----------~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v 227 (345)
|++++..+ + .+..+...+.+.++++.|+. .| |..+.|. +.+..
T Consensus 80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~~~~~~~~~~Y~~--~k-r~~~~p~-~~l~G 155 (297)
T PRK12871 80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIMLYSYGIEAFYQV--KK-RNQKYPV-AQLLG 155 (297)
T ss_pred cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cc-ccccccH-HHHHH
Confidence 23333222 1 01111222345677788884 11 1112352 23322
Q ss_pred HHHHHHHhHHHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHH
Q 019185 228 VIGNGINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTG 307 (345)
Q Consensus 228 ~~~~g~i~~lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ 307 (345)
+..++. .++..+... | . .+...++..++.++|+.+++.+||++|+|+|+++|+||+|+++|++++.++...
T Consensus 156 ~~~~~~-~~~~g~~~~-----g-~--~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~ 226 (297)
T PRK12871 156 RTDFTL-FPAAGYLCY-----G-Q--PDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTG 226 (297)
T ss_pred HHHHHH-HHHHHHHHh-----C-C--CcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHH
Confidence 223333 343334321 2 1 122345556777889999999999999999999999999999999999876665
Q ss_pred HHHHHHHHHH
Q 019185 308 ILLMAYASAA 317 (345)
Q Consensus 308 ll~~ayl~~i 317 (345)
+..+..+..+
T Consensus 227 ~~~l~~l~~~ 236 (297)
T PRK12871 227 FTALHFLAAI 236 (297)
T ss_pred HHHHHHHHHH
Confidence 5554444333
No 42
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.86 E-value=4.1e-20 Score=177.99 Aligned_cols=159 Identities=23% Similarity=0.276 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHhhhhhccccccc---------ChhHHHHh-------c-------hhHHHHHHHHHHHHhHhccCCc--c
Q 019185 158 VPTIMMNIFVVAINQLSDIAIDK---------SLAMGVML-------R-------SPPLVIALVLRCILGAAYSIDL--P 212 (345)
Q Consensus 158 la~~l~~~a~~~iNDy~D~eiD~---------S~~~al~l-------g-------~~~l~~~l~l~~~l~~~YS~~~--p 212 (345)
+++.+...++|++|||+|+|+|+ |++.++.+ | ++. ...+++.+.+++||.+. +
T Consensus 65 ~~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~s~~~a~~ls~la~llGl~La~~~g~~--ll~ll~~l~g~lYS~Glk~~ 142 (307)
T PRK13591 65 IAGGLIIYSVYTLDRALDSEEDAVNRSELIGSNKKIGLLVSLLAFLLGTYILAMDGML--LLAFLPFITGYLYSKGIKIG 142 (307)
T ss_pred HHHHHHHHHHHHHhhhccchhhhccCccccccCHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHhcCCCCCC
Confidence 34557799999999999999998 44444332 1 222 22346788999999621 1
Q ss_pred --cccccccCcchhHHHHHHHHHHhHHHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCc
Q 019185 213 --LLRWKASPLMAAVAIVIGNGINNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIR 290 (345)
Q Consensus 213 --P~rlKr~pllg~L~v~~~~g~i~~lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~ 290 (345)
|+|+|+++.+||+.++..||.....+. +.. .. .. .......++.....++++++||++|+|||+++|++
T Consensus 143 P~plklK~~~glGnl~V~i~~G~~i~g~~----g~~--~~--~~-~~~~~i~l~~~~~l~~~~iindirDiEGDr~~G~k 213 (307)
T PRK13591 143 KFALKLKGGLGVKNIVVGITWGGFIAGIA----GSY--CG--SL-IPVGLIFLFFGVKLFINSCVYDFKDVKGDTLAGIK 213 (307)
T ss_pred CccccccCCCchhHHHHHHHHHHHHHHHH----Hhh--hh--hH-HHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHcCCe
Confidence 458999999999999999998432211 110 00 01 01111122222334778899999999999999999
Q ss_pred ccchhhChHhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 019185 291 TLPVILGKERVLSMSTGILLMAYASAALAGVFSPILL 327 (345)
Q Consensus 291 TlpV~lG~k~a~~l~~~ll~~ayl~~il~~~~~~~~~ 327 (345)
|+|+++|+++++++..++..++|++.++...+.-.++
T Consensus 214 TLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~~ 250 (307)
T PRK13591 214 TLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIAF 250 (307)
T ss_pred eEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999888876664
No 43
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=99.86 E-value=7.2e-20 Score=176.37 Aligned_cols=203 Identities=19% Similarity=0.254 Sum_probs=136.2
Q ss_pred HHHHHHHHHhcc-chHHHHHHHHHHHHHhhcc---cCCC-CChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc----
Q 019185 110 KKLDAFYRLSRP-YAWTSIIVGILSSSLLPIQ---SLAD-LTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK---- 180 (345)
Q Consensus 110 ~~L~a~~~l~RP-~t~~~~~l~~l~G~llA~~---~~~~-~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~---- 180 (345)
++++.+.|++|- ||.+...+.+ .|.++|.. ...+ ++++.+..+++..++.+++++++|++|||+|+|+|+
T Consensus 2 ~~~~~~~~~i~~~ht~Falpfa~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~R 80 (300)
T PRK12876 2 MRIKYFQQLINCKYALFSALFLS-ASTVFALSLPEISFSLFSLGGIKTISLGGSAFFCARTVGIIVNQIIDCAIDKKNPR 80 (300)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccccccCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCC
Confidence 368899999995 7777666665 47777741 0011 112222335677888899999999999999999998
Q ss_pred -----------ChhHHHHhc-------------hhHHHHHH-HHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHh
Q 019185 181 -----------SLAMGVMLR-------------SPPLVIAL-VLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINN 235 (345)
Q Consensus 181 -----------S~~~al~lg-------------~~~l~~~l-~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~ 235 (345)
|+++|+.++ ..++...+ .++.++.+.|| .+||++++++++.+++.+...
T Consensus 81 T~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~~~~~~~~iY~------~~KR~t~~~~~vLGl~~~~~~ 154 (300)
T PRK12876 81 TSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAVLSTLLMIIYP------YTKRVTFLCHWILGLVYYLAI 154 (300)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------hHhcCCchhHHHHHHHHHHHH
Confidence 556665441 01222222 34566678898 489999999998777766632
Q ss_pred HHHHHHHhhhhhcCCcccchH--HHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHH
Q 019185 236 VLPYFLHVQKYVLGRPVVFTK--PLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAY 313 (345)
Q Consensus 236 ~lg~~~~~~~~~~g~~~~~~~--~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ay 313 (345)
..++.. .. +.+..+.. ..++..+...+|..+.+++++++|+|+|++.|+||+|+++|++++.+++..+..+..
T Consensus 155 l~~~~A-v~----~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~ 229 (300)
T PRK12876 155 LMNFFA-II----ETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASA 229 (300)
T ss_pred HHHHHH-Hh----cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHH
Confidence 234332 21 22111100 112223344567789999999999999999999999999999998888777776666
Q ss_pred HHHHHHHHHhh
Q 019185 314 ASAALAGVFSP 324 (345)
Q Consensus 314 l~~il~~~~~~ 324 (345)
+..++.+....
T Consensus 230 ~~l~~~g~~~~ 240 (300)
T PRK12876 230 IAYLLIGYFVS 240 (300)
T ss_pred HHHHHHHHHhh
Confidence 66666665554
No 44
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.82 E-value=8.7e-19 Score=162.71 Aligned_cols=163 Identities=25% Similarity=0.431 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc---------------ChhHHHHh-
Q 019185 125 TSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK---------------SLAMGVML- 188 (345)
Q Consensus 125 ~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~---------------S~~~al~l- 188 (345)
..+..+++.|...+.. ...++.. +..++++.++.+.++|.+|||+|+|.|+ |++++..+
T Consensus 2 ~~~~~~~l~~~~~~~~--~~~~~~~---~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~ 76 (257)
T PF01040_consen 2 PLSFLPVLAGLALASG--GPFNWPI---FLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFA 76 (257)
T ss_pred hHHHHHHHHHHHHHHc--CCCCHHH---HHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHH
Confidence 4566777777444433 3344432 4556667779999999999999999998 12222211
Q ss_pred ----------c---hhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHHHHHHHhhhhhcCCcccch
Q 019185 189 ----------R---SPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLHVQKYVLGRPVVFT 255 (345)
Q Consensus 189 ----------g---~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~~~~~~~~~~g~~~~~~ 255 (345)
+ .+......+++.+.+++|| ||+|+||+++++++++++.++.....+.+.. ++.. +
T Consensus 77 ~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~ 145 (257)
T PF01040_consen 77 LILLLLGLLLALLLGPWFLLILLLGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYAA------GGDP--P 145 (257)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhhc------CCcc--c
Confidence 1 1223333345667779999 8999999999999999888876534444431 2221 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHH
Q 019185 256 KPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLS 303 (345)
Q Consensus 256 ~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~ 303 (345)
.+.+....+..++.......+|++|+|+|+++|++|+|+++|++++..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 146 PPPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY 193 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence 344555556667888888899999999999999999999999999998
No 45
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=99.82 E-value=2.4e-18 Score=165.56 Aligned_cols=196 Identities=19% Similarity=0.156 Sum_probs=132.7
Q ss_pred HHHHHHHHhccchH---HHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc-------
Q 019185 111 KLDAFYRLSRPYAW---TSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK------- 180 (345)
Q Consensus 111 ~L~a~~~l~RP~t~---~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~------- 180 (345)
+++.|++++||+.+ ....+|.+.|..++... ..++. ..+.++++.+++.++++++||+.|+|+|+
T Consensus 6 ~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~--~~~~~---~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~ 80 (294)
T PRK12873 6 KLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSA--PPSLL---LLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTKN 80 (294)
T ss_pred hHHHHHHHhCccccchHHHHHHHHHHHHHHccCC--CCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCC
Confidence 67899999766555 45556777776665322 12222 35677889999999999999999999997
Q ss_pred --------ChhHHHHhch----------h-------HHHHHH-HHHHHHhHhccCCcccccccccCcchhHHHHHHHHHH
Q 019185 181 --------SLAMGVMLRS----------P-------PLVIAL-VLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGIN 234 (345)
Q Consensus 181 --------S~~~al~lg~----------~-------~l~~~l-~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i 234 (345)
|+++|++++. . +....+ .++.+....|+. .||+..+.+++.++..+..
T Consensus 81 RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~~~~~~~~~Y~~------~KR~t~~~~~vlg~~~a~~ 154 (294)
T PRK12873 81 RPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAFLALPPILIYPS------AKRWFAYPQAILALCWGFA 154 (294)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH------HHhccccchHHHHHHHHhH
Confidence 5566655410 0 111111 245566778883 7999988898887766663
Q ss_pred hHHHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHH
Q 019185 235 NVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYA 314 (345)
Q Consensus 235 ~~lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl 314 (345)
..+|+.+.. | ...+....+++.+...+|+.+.+++++++|+|+|+++|++|+|+++|+ ++..+...+..+..+
T Consensus 155 ~l~gw~Av~-----g-~~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~-~~~~~~~~~~~~~~~ 227 (294)
T PRK12873 155 VLIPWAAAE-----G-SLNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGS-NALKTVQICYFLTSI 227 (294)
T ss_pred HHHHHHHHh-----C-CCchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcCh-hhHHHHHHHHHHHHH
Confidence 223443321 2 222222334444567789999999999999999999999999999997 566666666666666
Q ss_pred HHHHHHHHhh
Q 019185 315 SAALAGVFSP 324 (345)
Q Consensus 315 ~~il~~~~~~ 324 (345)
++..++....
T Consensus 228 ll~~~g~~~~ 237 (294)
T PRK12873 228 FLALAAFIAQ 237 (294)
T ss_pred HHHHHHHHhC
Confidence 6666666554
No 46
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.70 E-value=8.6e-16 Score=147.26 Aligned_cols=194 Identities=11% Similarity=0.141 Sum_probs=119.9
Q ss_pred HHHHHHHHHhcc---chHHHHHHHHHHHHHhh-cc-cCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc----
Q 019185 110 KKLDAFYRLSRP---YAWTSIIVGILSSSLLP-IQ-SLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK---- 180 (345)
Q Consensus 110 ~~L~a~~~l~RP---~t~~~~~l~~l~G~llA-~~-~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~---- 180 (345)
++++-|.+..=| +......+.+- -+... .. +..+|.+. .+.+++++..++..+++|++|||+|+|+|+
T Consensus 3 k~~~iy~~e~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P 79 (299)
T PRK13592 3 KRLNVYLKEMYPLLPRLILSLTLFFE-IYMITLLSNHISSFRIG--IQEFVGVFTVFGFWMILRIADDFKDYETDRRLFP 79 (299)
T ss_pred hhHHHHHHHhccchhhhHHHHHHHHH-HHHHhhhccCCCCCCCc--hHHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCC
Confidence 355666666544 44444443332 22222 11 22334332 356677777889999999999999999998
Q ss_pred ---------ChhHHHHhch---------hHHHHHHHHHHHHhHhc-----cCCcccccccccCcchhHHHHHHHHHHh--
Q 019185 181 ---------SLAMGVMLRS---------PPLVIALVLRCILGAAY-----SIDLPLLRWKASPLMAAVAIVIGNGINN-- 235 (345)
Q Consensus 181 ---------S~~~al~lg~---------~~l~~~l~l~~~l~~~Y-----S~~~pP~rlKr~pllg~L~v~~~~g~i~-- 235 (345)
|++++..++. ..+....+...+..+.| +. ++|+.++.||+.++...|...
T Consensus 80 ~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~~i~i~~~~i~~lY~~lm~a~-----~~K~~~l~gNl~Va~ltg~~f~~ 154 (299)
T PRK13592 80 HRALPSGRVKKKDLAIALSFIVAVSVLLNVLFMNNVGWFLFLYIYGTLMSFW-----FFKRDKIQNSLPLALVTHNPVMM 154 (299)
T ss_pred CCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHcccCCCcchhhhhhccchhhh
Confidence 6677755431 11111112445677888 75 789999999999877666432
Q ss_pred HHHHHHH-hhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHH
Q 019185 236 VLPYFLH-VQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYA 314 (345)
Q Consensus 236 ~lg~~~~-~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl 314 (345)
.++++.. .+....|.+. .....++..+..++.++++|+.||++| |||++ |.+|+|+++|+|++.+++..+..+..+
T Consensus 155 g~~~~~~~fg~~~~g~~~-~~~~~~~l~l~afl~~l~rEI~KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~ 231 (299)
T PRK13592 155 ILNLYTISFVCYKYNLPL-LSLPTVLLAFTMYFPSLIWEVCRKIRA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDIL 231 (299)
T ss_pred chhhhhhhhhhhhcccch-hhHHHHHHHHHHHHHHHHHHHHHhhcC-Ccccc-CCeeechhccchhHHHHHHHHHHHHHH
Confidence 1233321 1111112111 111112334455567899999999999 88886 599999999999999999888664444
No 47
>PLN02776 prenyltransferase
Probab=99.58 E-value=2.5e-13 Score=133.15 Aligned_cols=176 Identities=13% Similarity=0.039 Sum_probs=116.9
Q ss_pred HhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc---------------Ch
Q 019185 118 LSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK---------------SL 182 (345)
Q Consensus 118 l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~---------------S~ 182 (345)
++||+.....+++.+.|+++|.... .++. .++.++++.+++.+++|++||++|+|+|+ |+
T Consensus 1 L~Kpri~~lv~~ta~~G~~lA~~~~--~~~~---~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~ 75 (341)
T PLN02776 1 LSKARLSALVVATSGAGFVLGSGEA--IDLP---GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV 75 (341)
T ss_pred CCcchhHHHHHHHHHHHHHHhcCCC--CCHH---HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence 4689999999999999999985422 2332 24567788899999999999999999996 55
Q ss_pred hHHHHhc-------h-------hHHHHHH-HHHHH-HhHhccCCcccccccccCcchhHHHHHHHHHHhHHHHHHHhhhh
Q 019185 183 AMGVMLR-------S-------PPLVIAL-VLRCI-LGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVLPYFLHVQKY 246 (345)
Q Consensus 183 ~~al~lg-------~-------~~l~~~l-~l~~~-l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~lg~~~~~~~~ 246 (345)
++|++++ . .+....+ +++.+ ....|+ .+||+..+ +..++...|.+.|+..|.+..
T Consensus 76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt------~lKR~t~~-~~~lG~~~Ga~ppL~Gw~Avt-- 146 (341)
T PLN02776 76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYT------PLKQIHPA-NTWVGAVVGAIPPLMGWAAAS-- 146 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH------hHccCCch-hHHHHHHHHHHHHHHHHHHHc--
Confidence 6664432 1 0111111 12222 345788 37999986 567777777555654444321
Q ss_pred hcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhh--ChHhHHHHHHHHHHHH
Q 019185 247 VLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVIL--GKERVLSMSTGILLMA 312 (345)
Q Consensus 247 ~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~l--G~k~a~~l~~~ll~~a 312 (345)
+... ...+++.+...+|+......-.+.|.|+|+++|++++|+.- |++.++.+......+.
T Consensus 147 ---g~~~--~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~ 209 (341)
T PLN02776 147 ---GQLD--AGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLA 209 (341)
T ss_pred ---CCCC--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHH
Confidence 2222 23445566667888877777778888899999999999976 4565555554444333
No 48
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.3e-13 Score=132.09 Aligned_cols=190 Identities=18% Similarity=0.193 Sum_probs=131.0
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc--------
Q 019185 109 TKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK-------- 180 (345)
Q Consensus 109 ~~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~-------- 180 (345)
.+++|+|++++||+.+....++...|..+|.. ...++.. ++.++++..+..++++++|+++|+|+|+
T Consensus 15 ~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~--~~~~~~l---~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~R 89 (304)
T COG0109 15 RSTIKDYLQLTKPRVISLLLITAFAGMLLAPR--GSINPLL---LLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKR 89 (304)
T ss_pred HHHHHHHHHHhCCeeeehHHHHHHHHHHHccc--ccccHHH---HHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCC
Confidence 56899999999999999999999999999965 2344443 5778889999999999999999999997
Q ss_pred -------ChhHHHHhch---------------hHHHHHH-HHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHH
Q 019185 181 -------SLAMGVMLRS---------------PPLVIAL-VLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVL 237 (345)
Q Consensus 181 -------S~~~al~lg~---------------~~l~~~l-~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~l 237 (345)
++++++.+|. +...+.. +--++..+.||. -+||+... |.+++..-|.+.|+
T Consensus 90 P~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~-----~lKR~T~~-NiviGg~aGa~Ppl 163 (304)
T COG0109 90 PLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTL-----WLKRRTPQ-NIVIGGFAGAMPPL 163 (304)
T ss_pred CCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-----hccCCccc-ceeeeecccccccc
Confidence 5566655421 1111111 223567888997 47999984 66665555554554
Q ss_pred -HHHHHhhhhhcCCcccchHHHHHHHHHHH----HHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHH
Q 019185 238 -PYFLHVQKYVLGRPVVFTKPLLFAVAFSA----IFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMA 312 (345)
Q Consensus 238 -g~~~~~~~~~~g~~~~~~~~~~l~~l~~~----l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~a 312 (345)
|+.++. +..+.....++..+|+| +|++++..-+|. +++|+..+|++-|++.+++-...-..+.
T Consensus 164 iGwaAvt------g~~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY------~~AgiPMlPvv~G~~~t~~~I~~y~~~l 231 (304)
T COG0109 164 IGWAAVT------GSISLGAILLFAIIFLWTPPHFWALALKYKDDY------KAAGIPMLPVVKGERRTKRQILLYTLAL 231 (304)
T ss_pred ceeeeee------CCCCchHHHHHHHHHHhccHHHHHHHHHHHHHH------HHcCCCcccccccHHHHHHHHHHHHHHH
Confidence 554332 23334444455666666 677777666666 8999999999999999986654444333
Q ss_pred HHHHHHHHH
Q 019185 313 YASAALAGV 321 (345)
Q Consensus 313 yl~~il~~~ 321 (345)
..+.++...
T Consensus 232 ~~~sl~~~~ 240 (304)
T COG0109 232 APVSLLLAL 240 (304)
T ss_pred HHHHHHHHH
Confidence 333333333
No 49
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.52 E-value=8.2e-13 Score=127.52 Aligned_cols=116 Identities=23% Similarity=0.409 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc--------
Q 019185 109 TKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK-------- 180 (345)
Q Consensus 109 ~~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~-------- 180 (345)
.++++++++++||+.|....+.+.. .+++... .+.. .+...+.++++.++..+++|++||++|+|+|+
T Consensus 8 ~~~l~~~l~L~RP~~w~~nll~~~~-~~~a~~~-~~~~--~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~R 83 (295)
T PRK12324 8 KNLLAGYLKLLRPKQWIKNLFVFAA-PIFAGNL-LNPG--ALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNR 83 (295)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHH-HHHHHhh-cccc--hHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCC
Confidence 4589999999999999999987664 4555332 1111 12235567777778899999999999999998
Q ss_pred -------ChhHHHHhc--------------hhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHH
Q 019185 181 -------SLAMGVMLR--------------SPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGI 233 (345)
Q Consensus 181 -------S~~~al~lg--------------~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~ 233 (345)
|+++|++++ .+......+..+++.++||. ++||+++++++++++.++.
T Consensus 84 PlasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~~~~~~~~~~~Ys~-----~lK~~~~~d~l~va~~~~l 152 (295)
T PRK12324 84 PIASGVVSVSLAYILAVVLLVASLALAYLLSPKLALVLLVYLVLNLAYSF-----KLKHQPVLDVFCIASGFVL 152 (295)
T ss_pred CCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-----HhcCCchhhHHHHHHHHHH
Confidence 455664431 11112222456778889996 7899999999998766654
No 50
>PRK08238 hypothetical protein; Validated
Probab=99.48 E-value=7.5e-13 Score=135.52 Aligned_cols=164 Identities=20% Similarity=0.301 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc-----
Q 019185 106 DFLTKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK----- 180 (345)
Q Consensus 106 ~~~~~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~----- 180 (345)
++.+.++++|++++||+.|....+.++ +.+.+... . ++..+...++++++..++.+++|++||++|+|+|+
T Consensus 185 ~~~~~~~~~~~~l~Rp~q~~kn~l~~~-p~l~a~~~-~--~~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk 260 (479)
T PRK08238 185 PPRPARLRTWLKALRVHQWAKNLLVFV-PLLAAHQF-G--DLQALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRK 260 (479)
T ss_pred CCCchHHHHHHHHhCCcHHHHHHHHHH-HHHHhccc-C--ChHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCC
Confidence 444668999999999999999999865 76666321 1 22222345677888889999999999999999998
Q ss_pred ----------ChhHHHHhc--------------hhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHHHHHHHhH
Q 019185 181 ----------SLAMGVMLR--------------SPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNV 236 (345)
Q Consensus 181 ----------S~~~al~lg--------------~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~ 236 (345)
|+++|++++ ++.....++..+++.++||. ++||.++++++++++.++.-+.
T Consensus 261 ~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~Ys~-----~lKr~~~~~~~~la~~~~lr~~ 335 (479)
T PRK08238 261 RRRPFASGALPIPFGLAAAPLLLLAGLALALALGPAFLLVLLAYLALTLAYSL-----RLKRKVLVDVLTLAALYTLRII 335 (479)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhH-----HhcCCccccchHHHHHHHHHHH
Confidence 455664431 12222223456778889995 7999999999998776655323
Q ss_pred HHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCC
Q 019185 237 LPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGI 289 (345)
Q Consensus 237 lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi 289 (345)
.|... .+ ... +.|+. ++..++.+...+.|...|+++++..|.
T Consensus 336 ~G~~a------~~--~~~--s~wll-~~~~~~~l~la~~KR~~El~~~~~~~~ 377 (479)
T PRK08238 336 AGAAA------IG--VAL--SFWLL-AFSMFFFLSLALVKRYTELRRALQRGK 377 (479)
T ss_pred HHHHH------hc--cCH--HHHHH-HHHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence 33321 12 122 23332 233355678888999999999888886
No 51
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=99.40 E-value=4.2e-13 Score=126.02 Aligned_cols=206 Identities=16% Similarity=0.074 Sum_probs=131.4
Q ss_pred HHHHHHHHhccchH---HHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc-------
Q 019185 111 KLDAFYRLSRPYAW---TSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK------- 180 (345)
Q Consensus 111 ~L~a~~~l~RP~t~---~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~------- 180 (345)
+++.|-+++|-..- ....+|..-..++|.. +...+. +--..++-+++++|.++++++||+.|+|+|.
T Consensus 63 r~~pYaqLmRldkPiGTwLLywPCtWSIamaAd--ag~~p~-~~mL~LFG~GAllMRgAGCtINDlwDkdlD~KVeRtkl 139 (353)
T KOG1381|consen 63 RWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAAD--AGLLPS-IKMLALFGVGALLMRGAGCTINDLWDKDLDAKVERTKL 139 (353)
T ss_pred cchhHHHHHhcCCCceeeeeecchHHHHHhccC--CCccch-hHHHHHhcccHHHhccCCceehhhhhhhhhhhHhhhcc
Confidence 57778777774443 3445566556666652 222221 1123455678899999999999999999996
Q ss_pred --------ChhHHHHh-c-------------hhHHHHHHHHHHHHhHhccCCcccccccccCcchhHHHHH--HHHHHhH
Q 019185 181 --------SLAMGVML-R-------------SPPLVIALVLRCILGAAYSIDLPLLRWKASPLMAAVAIVI--GNGINNV 236 (345)
Q Consensus 181 --------S~~~al~l-g-------------~~~l~~~l~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~--~~g~i~~ 236 (345)
|+++|+.+ + .|.-...+..++...+.|+ -+||.+++.+++.+. .||.+
T Consensus 140 RPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg~~sl~~v~~yp------l~kr~TY~pq~vLgltfnwGAl-- 211 (353)
T KOG1381|consen 140 RPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALGASSLALVITYP------LMKRFTYWPQLVLGLTFNWGAL-- 211 (353)
T ss_pred cccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhcccccccEEEee------hhhhcchhHHHHHhhhcchhhh--
Confidence 67787665 1 1112222234666777788 479999888887543 34432
Q ss_pred HHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHHHH
Q 019185 237 LPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYASA 316 (345)
Q Consensus 237 lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~ 316 (345)
+|+-+ + ++.. .+...+.+++...+|++..+.+++++|-++|.+.|+++.+.|+|++.-.|+..+- .+....+
T Consensus 212 lGw~A-~-----~g~~-~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~gf~-a~~ia~L 283 (353)
T KOG1381|consen 212 LGWCA-L-----KGSL-SPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSGFG-AAQIASL 283 (353)
T ss_pred hcchh-h-----cCcc-ChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhhhh-HHHHHHH
Confidence 23221 1 2222 1222344566666899999999999999999999999999999988666665443 3445555
Q ss_pred HHHHHHhhHH--HHHHHHHHH
Q 019185 317 ALAGVFSPIL--LCKLVTMIG 335 (345)
Q Consensus 317 il~~~~~~~~--~~~~~~~~~ 335 (345)
.++++.+-.. +..++.++|
T Consensus 284 a~aG~~s~q~~pyy~~lg~~~ 304 (353)
T KOG1381|consen 284 AAAGIASDQTWPYYAALGAVA 304 (353)
T ss_pred HHhhhccCCCchHHHHHHHHH
Confidence 5666666433 335555555
No 52
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=99.29 E-value=2.3e-12 Score=118.70 Aligned_cols=213 Identities=17% Similarity=0.176 Sum_probs=146.8
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccc--cccc------
Q 019185 109 TKKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDI--AIDK------ 180 (345)
Q Consensus 109 ~~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~--eiD~------ 180 (345)
..+.+.|+-..||+.+-.++.|..+|.++|+.+-...++.. ..+.++..+....+.++|.+|.|||. .+|.
T Consensus 58 ~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l-~~~fl~a~avlavh~agnlvntyfdf~kgid~kkaddr 136 (359)
T KOG4581|consen 58 FMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRL-ATFFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKADDR 136 (359)
T ss_pred HHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhH-HHHHHHHhhheeeecccchhhhhhhhhhccccccccch
Confidence 45788999999999999999999999999987432222221 12334445556689999999999997 3554
Q ss_pred -------C----hhHHHHh---c----------hh---HHHHHH-HHHHHHhHhccCCcccccccccCcchhHHHHHHHH
Q 019185 181 -------S----LAMGVML---R----------SP---PLVIAL-VLRCILGAAYSIDLPLLRWKASPLMAAVAIVIGNG 232 (345)
Q Consensus 181 -------S----~~~al~l---g----------~~---~l~~~l-~l~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g 232 (345)
. .+.|.++ | ++ .-+..+ +.++--...|+ +.+.+|+..+ |.+++.+.+|
T Consensus 137 tlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflyt---ggigfkyial-gdliili~fg 212 (359)
T KOG4581|consen 137 TLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYT---GGIGFKYIAL-GDLIILILFG 212 (359)
T ss_pred hHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEe---cccceEEEec-cCEEEEEeec
Confidence 1 1223222 1 00 111111 23444567788 4568898887 8888777777
Q ss_pred HHhHHHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHH
Q 019185 233 INNVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMA 312 (345)
Q Consensus 233 ~i~~lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~a 312 (345)
.+..+-.|. .|+ | ...+ ..+-.+++..+-+-++...|+-+|.|.||++|+.|+++.+|+..+..++..++.++
T Consensus 213 piavlfaf~-~q~---g-~l~~--~~l~yaiplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~p 285 (359)
T KOG4581|consen 213 PIAVLFAFA-IQT---G-HLAI--FPLGYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAP 285 (359)
T ss_pred hHHHHHHHH-Hhc---C-ceeE--EeehheeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHHH
Confidence 653322221 222 1 1122 12234556667788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHH
Q 019185 313 YASAALAGVFSPILLCKLVTM 333 (345)
Q Consensus 313 yl~~il~~~~~~~~~~~~~~~ 333 (345)
|.+....+.-.+.++......
T Consensus 286 y~lf~i~~~~~si~~~lpllt 306 (359)
T KOG4581|consen 286 YLLFFIFALHCSISFALPLLT 306 (359)
T ss_pred HHHHHHHHHHHHHHHHhHHhh
Confidence 999999988888777654443
No 53
>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]
Probab=97.70 E-value=5.5e-05 Score=73.50 Aligned_cols=181 Identities=20% Similarity=0.193 Sum_probs=114.0
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhhhccccccc---------
Q 019185 110 KKLDAFYRLSRPYAWTSIIVGILSSSLLPIQSLADLTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAIDK--------- 180 (345)
Q Consensus 110 ~~L~a~~~l~RP~t~~~~~l~~l~G~llA~~~~~~~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD~--------- 180 (345)
+.++.|+++++|+--...++....|+++|-.. +++.. ++..-++..+..++.|.+|++++.+.|+
T Consensus 92 k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p---~s~~~---l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rp 165 (409)
T KOG1380|consen 92 KYARCYLELSKPRLTMLVVLTTMTGYALAPGP---FSFPT---LLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRP 165 (409)
T ss_pred chHHHHHHhcccceEEEEeeeccccccccccC---CCcch---hHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccc
Confidence 46789999999988888888887888888542 44443 5667788899999999999999999997
Q ss_pred ------ChhHHHHh--------------chhHHHHHHHH--HHHHhHhccCCcccccccccCcchhHHHHHHHHHHhHH-
Q 019185 181 ------SLAMGVML--------------RSPPLVIALVL--RCILGAAYSIDLPLLRWKASPLMAAVAIVIGNGINNVL- 237 (345)
Q Consensus 181 ------S~~~al~l--------------g~~~l~~~l~l--~~~l~~~YS~~~pP~rlKr~pllg~L~v~~~~g~i~~l- 237 (345)
|+..|+.+ +..|+..++.. -++.++.|+ ++||.-. .|-.++..-|.+.|+
T Consensus 166 lv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYT------PlKrihi-inTWvGavVGAIPPLM 238 (409)
T KOG1380|consen 166 LVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYT------PLKRIHI-INTWVGAVVGAIPPLM 238 (409)
T ss_pred cccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeecccc------chhhhhh-hhhHHHHHhccCCccc
Confidence 44444443 12344433322 246677888 5898886 455555556666665
Q ss_pred HHHHHhhhhhcCCcccchHHHHHHHHHHH----HHHHHHHHHhhCCChHHHHhcCCcccchh---hChHhHHHHHHHHHH
Q 019185 238 PYFLHVQKYVLGRPVVFTKPLLFAVAFSA----IFSIVLSLLKDIPDVEGDKKSGIRTLPVI---LGKERVLSMSTGILL 310 (345)
Q Consensus 238 g~~~~~~~~~~g~~~~~~~~~~l~~l~~~----l~~~~~~i~~di~DiegDr~~Gi~TlpV~---lG~k~a~~l~~~ll~ 310 (345)
|+....+ ........+...++.| |.+++..+-+|. .++|.+.+++. +-++.+.+....++.
T Consensus 239 GwAAasg------~l~~ga~iLa~~LyaWQfPHFnaLS~~lR~DY------s~~GY~Mma~~np~l~rr~alr~s~a~~~ 306 (409)
T KOG1380|consen 239 GWAAASG------LLDPGAMILAGILYAWQFPHFNALSWNLRNDY------SKAGYRMMAVTNPGLCRRVALRYSLAFLP 306 (409)
T ss_pred hhhhhcc------CCCccHHHHHHHHHHhcccchhhhhhhhchhh------hhccEEEEEeeccchhhHHHHHHHHHHhh
Confidence 5543322 1111112222223333 333444444444 78999999875 555667777777766
Q ss_pred HHHHH
Q 019185 311 MAYAS 315 (345)
Q Consensus 311 ~ayl~ 315 (345)
+.|..
T Consensus 307 L~~~~ 311 (409)
T KOG1380|consen 307 LSYAA 311 (409)
T ss_pred hhccc
Confidence 66443
No 54
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=91.67 E-value=1.6 Score=41.48 Aligned_cols=45 Identities=20% Similarity=0.164 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhhCCChHHHHhcCCcccchhhCh---HhHHHHHHHHH
Q 019185 264 FSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGK---ERVLSMSTGIL 309 (345)
Q Consensus 264 ~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~---k~a~~l~~~ll 309 (345)
...+...+..++||+-|.|.|++. ++.-|..-|+ +.+..++..+.
T Consensus 45 ~~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~is~~~a~~~~~~~~ 92 (279)
T PRK12884 45 TAFFASGSANALNDYFDYEVDRIN-RPDRPIPSGRISRREALLLAILLF 92 (279)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCCCCHHHHHHHHHHHH
Confidence 344556777899999999999998 6777777774 44554444443
No 55
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=90.12 E-value=2.4 Score=41.22 Aligned_cols=50 Identities=12% Similarity=0.122 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhhCCChHHHHhcCCcccchh---hChHhHHHHHHHHHHHHHHH
Q 019185 265 SAIFSIVLSLLKDIPDVEGDKKSGIRTLPVI---LGKERVLSMSTGILLMAYAS 315 (345)
Q Consensus 265 ~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~---lG~k~a~~l~~~ll~~ayl~ 315 (345)
..+...+...+||+-|.|.|++.+. +=|+. +..+.+..+...+..++.+.
T Consensus 63 ~~l~~~~~n~~NDy~D~d~D~~~~~-~Rpi~~G~is~~~a~~~~~~l~~~~~~l 115 (306)
T TIGR02056 63 GPCLTGYTQTINDFYDRDIDAINEP-YRPIPSGAISEPEVITQIVLLFIAGIAI 115 (306)
T ss_pred HHHHHHHHHHHHhHhhhhhhccCCC-CCCCCCCccCHHHHHHHHHHHHHHHHHH
Confidence 3456677899999999999987763 34444 44566665555554443333
No 56
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=88.48 E-value=4 Score=38.85 Aligned_cols=29 Identities=10% Similarity=0.199 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHhhCCChHHHHhcCC
Q 019185 261 AVAFSAIFSIVLSLLKDIPDVEGDKKSGI 289 (345)
Q Consensus 261 ~~l~~~l~~~~~~i~~di~DiegDr~~Gi 289 (345)
..+...+...+...+||+.|.|.|+.+..
T Consensus 41 ~~~~~~~~~~~~~~~N~~~D~~~D~~n~~ 69 (285)
T PRK12872 41 LLLITFLIAAAVYIINYLTDLEEDIINKP 69 (285)
T ss_pred HHHHHHHHHHHHHHhhhhcCCchhhcCCC
Confidence 34445566788899999999999987543
No 57
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=88.21 E-value=2.8 Score=38.54 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhCCChHHHHhc-CCcccchhhCh
Q 019185 267 IFSIVLSLLKDIPDVEGDKKS-GIRTLPVILGK 298 (345)
Q Consensus 267 l~~~~~~i~~di~DiegDr~~-Gi~TlpV~lG~ 298 (345)
+...+....||+.|.|.|+.. +++.-|..-|+
T Consensus 34 ~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~ 66 (257)
T PF01040_consen 34 LLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGR 66 (257)
T ss_pred HHHHHHHHhhChhhhhcCcccccccCcchhHHH
Confidence 566788899999999999996 34444444444
No 58
>PRK13592 ubiA prenyltransferase; Provisional
Probab=87.96 E-value=8.5 Score=37.67 Aligned_cols=49 Identities=18% Similarity=0.203 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhCCChHHHHhcCCcccchhhC---hHhHHHHHHHHHHHHHH
Q 019185 265 SAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILG---KERVLSMSTGILLMAYA 314 (345)
Q Consensus 265 ~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG---~k~a~~l~~~ll~~ayl 314 (345)
.++.+.+..++||+.|+|-|+.+ +..-|.-=| ++.++.++..+..++..
T Consensus 55 vf~~~~~gniiNDy~D~EIDrIN-~P~RPLPsG~VS~~~A~~~si~L~~~~l~ 106 (299)
T PRK13592 55 VFGFWMILRIADDFKDYETDRRL-FPHRALPSGRVKKKDLAIALSFIVAVSVL 106 (299)
T ss_pred HHHHHHHhHHHHHHhhHHHhhhc-CCCCCCCcCCCCHHHHHHHHHHHHHHHHH
Confidence 44556778999999999999664 444444444 45566555555443333
No 59
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=87.69 E-value=3.7 Score=40.01 Aligned_cols=46 Identities=24% Similarity=0.378 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhCCChHHHHhc-CCcccch---hhChHhHHHHHHHHHHH
Q 019185 266 AIFSIVLSLLKDIPDVEGDKKS-GIRTLPV---ILGKERVLSMSTGILLM 311 (345)
Q Consensus 266 ~l~~~~~~i~~di~DiegDr~~-Gi~TlpV---~lG~k~a~~l~~~ll~~ 311 (345)
++...+..++||+.|+|.|+++ .++.=|. ++..+.+..++..++.+
T Consensus 56 ~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~ 105 (295)
T PRK12324 56 CLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVA 105 (295)
T ss_pred HHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHH
Confidence 3445677899999999999986 2233333 34556565555544443
No 60
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=86.15 E-value=5.6 Score=38.57 Aligned_cols=76 Identities=11% Similarity=-0.010 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhCCChHHHHhcCC-cccc---hhhChHhHHHHHHHHHHHHHHHHH------------HHHHHhhHHHHHH
Q 019185 267 IFSIVLSLLKDIPDVEGDKKSGI-RTLP---VILGKERVLSMSTGILLMAYASAA------------LAGVFSPILLCKL 330 (345)
Q Consensus 267 l~~~~~~i~~di~DiegDr~~Gi-~Tlp---V~lG~k~a~~l~~~ll~~ayl~~i------------l~~~~~~~~~~~~ 330 (345)
+...+-..+||+-|+|-|++.-+ +.=| -++..+.+..+...+..+...+.. ...+...+||.|=
T Consensus 48 ~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~~~~~l~~~yp~~KR 127 (286)
T PRK12895 48 SARTSAMSINRIEGLRYDMINPRKKDWALVSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSPIVIFLFIIDPFLKR 127 (286)
T ss_pred HHHHHHHHHHhHHHhcccCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567789999999999988733 1233 344455565555444333322111 1112223455566
Q ss_pred HHHHHHHHHHHH
Q 019185 331 VTMIGHSVLGFI 342 (345)
Q Consensus 331 ~~~~~~~~~~~~ 342 (345)
.|..+|.++++.
T Consensus 128 ~t~~~~~~lG~~ 139 (286)
T PRK12895 128 YTAWRHIYMGSI 139 (286)
T ss_pred CccccHHHHHHH
Confidence 666666665543
No 61
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=84.86 E-value=6.1 Score=37.93 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHhhCCChHHHHhcCC-cccchhhCh
Q 019185 261 AVAFSAIFSIVLSLLKDIPDVEGDKKSGI-RTLPVILGK 298 (345)
Q Consensus 261 ~~l~~~l~~~~~~i~~di~DiegDr~~Gi-~TlpV~lG~ 298 (345)
..+...+...+...+||+.|+|-|+++-. +.-|..-|+
T Consensus 52 ~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~ 90 (289)
T COG0382 52 AFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGR 90 (289)
T ss_pred HHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCC
Confidence 33344456688899999999999998876 344444443
No 62
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=82.99 E-value=7.3 Score=37.73 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhCCChHHHHhcCC-cccchhhCh
Q 019185 265 SAIFSIVLSLLKDIPDVEGDKKSGI-RTLPVILGK 298 (345)
Q Consensus 265 ~~l~~~~~~i~~di~DiegDr~~Gi-~TlpV~lG~ 298 (345)
..+...+-..+||+.|+|-|++..+ +.-|..-|+
T Consensus 54 ~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~ 88 (289)
T PLN02809 54 ALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGA 88 (289)
T ss_pred HHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCC
Confidence 3455577789999999999998655 567766674
No 63
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=81.77 E-value=12 Score=35.77 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhhCCChHHHHhcCCcccchh---hChHhHHHHHHHHHHH
Q 019185 264 FSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVI---LGKERVLSMSTGILLM 311 (345)
Q Consensus 264 ~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~---lG~k~a~~l~~~ll~~ 311 (345)
...+...+-.++||+-|+|.|++.. +.-|.. +.++.+..++..+..+
T Consensus 45 ~~~l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~is~~~a~~~~~~l~~~ 94 (279)
T PRK09573 45 VVFLVCAGGNVINDIYDIEIDKINK-PERPIPSGRISLKEAKIFSITLFIV 94 (279)
T ss_pred HHHHHHHHHHHHHhhcccccccccC-CCCCcCCCccCHHHHHHHHHHHHHH
Confidence 3445567778999999999999764 444444 4456666555555443
No 64
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=81.35 E-value=9.1 Score=37.32 Aligned_cols=45 Identities=20% Similarity=0.127 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHhhCCChHHHHhcCC-cccchhhCh---HhHHHHHHHH
Q 019185 264 FSAIFSIVLSLLKDIPDVEGDKKSGI-RTLPVILGK---ERVLSMSTGI 308 (345)
Q Consensus 264 ~~~l~~~~~~i~~di~DiegDr~~Gi-~TlpV~lG~---k~a~~l~~~l 308 (345)
..++...+-..+||+-|+|-|++.-+ +.-|..-|+ +.+..+...+
T Consensus 52 g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~is~~~A~~~~~~~ 100 (294)
T PRK12873 52 GGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKISLKTAYSLLIVL 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCCCHHHHHHHHHHH
Confidence 33455677789999999999998776 566655554 5555444443
No 65
>PRK13595 ubiA prenyltransferase; Provisional
Probab=81.28 E-value=18 Score=35.33 Aligned_cols=48 Identities=23% Similarity=0.265 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhhCCChHHHHhcCCcccch---hhChHhHHHHHHHHHHH
Q 019185 263 AFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPV---ILGKERVLSMSTGILLM 311 (345)
Q Consensus 263 l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV---~lG~k~a~~l~~~ll~~ 311 (345)
.+..........+||+-|.|.|+++-.+ -+. ++.++.+..+...+...
T Consensus 54 ~~~~p~n~~~~giND~fD~eiDa~Npr~-~~i~~G~is~~~~~~~~~~~~~~ 104 (292)
T PRK13595 54 YLTLPFNLLIYGLNDLADRETDAASPRK-GGWQGARLSPGEVRPLLRAVLLL 104 (292)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhccCCCC-CCCCcCccCHHHHHHHHHHHHHH
Confidence 3344556778999999999999866543 232 44455555544434333
No 66
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=81.02 E-value=11 Score=35.88 Aligned_cols=45 Identities=18% Similarity=0.123 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhCCChHHHHhcCCcccchhhC---hHhHHHHHHHHHH
Q 019185 265 SAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILG---KERVLSMSTGILL 310 (345)
Q Consensus 265 ~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG---~k~a~~l~~~ll~ 310 (345)
..+...+-.++||+-|+|-|++.. +.=|..-| .+.+..++..+..
T Consensus 47 ~~l~~~~~~~~Nd~~D~~iD~~~~-~~Rpl~~G~is~~~a~~~~~~l~~ 94 (276)
T PRK12882 47 VFLATGAGNAINDYFDREIDRINR-PDRPIPSGAVSPRGALAFSILLFA 94 (276)
T ss_pred HHHHHHHHHHHHHHhhhccccccC-CCCCcCCCCcCHHHHHHHHHHHHH
Confidence 334557778999999999999754 55666555 4555555544443
No 67
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=80.65 E-value=16 Score=35.76 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=22.6
Q ss_pred HHHhhCCChHHHHhcCCcccchhhC---hHhHHHHHHHH
Q 019185 273 SLLKDIPDVEGDKKSGIRTLPVILG---KERVLSMSTGI 308 (345)
Q Consensus 273 ~i~~di~DiegDr~~Gi~TlpV~lG---~k~a~~l~~~l 308 (345)
..+||+.|+|-|+.+ +++.|..=| ++.+..+...+
T Consensus 70 ~~iNd~~D~~iD~in-kp~rPiasG~ls~~~a~~~~~~~ 107 (308)
T PRK12887 70 VGLNQLTDIEIDRIN-KPHLPLAAGEFSRRQGQRIVIIT 107 (308)
T ss_pred HHHhhhhhHHHHhcC-CCCCCcCCcccCHHHHHHHHHHH
Confidence 339999999999964 466665444 44444444333
No 68
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=80.61 E-value=9.5 Score=37.27 Aligned_cols=44 Identities=18% Similarity=0.170 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhCCChHHHHhcCCcccch---hhChHhHHHHHHHHHHH
Q 019185 267 IFSIVLSLLKDIPDVEGDKKSGIRTLPV---ILGKERVLSMSTGILLM 311 (345)
Q Consensus 267 l~~~~~~i~~di~DiegDr~~Gi~TlpV---~lG~k~a~~l~~~ll~~ 311 (345)
+...+..++||+-|.|.|++.+ ++=|. ++.++.+..+...+..+
T Consensus 76 l~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~sG~is~~~a~~~~~~l~~~ 122 (314)
T PRK07566 76 LLCGTSQTLNDYFDREVDAINE-PYRPIPSGAISLRWVLYLIAVLTVL 122 (314)
T ss_pred HHHHHHHHHhhhhccCccccCC-CCCCCCCceeCHHHHHHHHHHHHHH
Confidence 3457778999999999998754 34444 34456666665555443
No 69
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=80.00 E-value=12 Score=37.13 Aligned_cols=43 Identities=28% Similarity=0.288 Sum_probs=28.4
Q ss_pred HHHHHhhCCChHHHHhcCCcccchhhC---hHhHHHHHHHHHHHHHH
Q 019185 271 VLSLLKDIPDVEGDKKSGIRTLPVILG---KERVLSMSTGILLMAYA 314 (345)
Q Consensus 271 ~~~i~~di~DiegDr~~Gi~TlpV~lG---~k~a~~l~~~ll~~ayl 314 (345)
+-.++||+-|+|.|+..+ +|=|..-| +|.+..++..+..++.+
T Consensus 65 a~~~iND~~D~~~D~~n~-rtRpl~~G~is~~~al~~~~~l~~la~~ 110 (331)
T PRK12392 65 FSQSVNDYFDLELDRVNE-PTRPIPSGRLSEKEALWNSIIVLLLAIG 110 (331)
T ss_pred HHhHHhcceeecccccCC-CCCCCCcCCcCHHHHHHHHHHHHHHHHH
Confidence 347899999999998764 45554444 56666666655544443
No 70
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=79.96 E-value=9.1 Score=36.57 Aligned_cols=44 Identities=11% Similarity=-0.026 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhCCChHHHHhcCCcccchh---hChHhHHHHHHHHHHH
Q 019185 267 IFSIVLSLLKDIPDVEGDKKSGIRTLPVI---LGKERVLSMSTGILLM 311 (345)
Q Consensus 267 l~~~~~~i~~di~DiegDr~~Gi~TlpV~---lG~k~a~~l~~~ll~~ 311 (345)
+...+-..+||+-|.|.|++.+ ++=|.. +-+|.++.+...+..+
T Consensus 49 l~~~~~n~~Nd~~D~~~D~~~~-~~Rpi~~G~is~~~a~~~~~~~~~~ 95 (283)
T TIGR01476 49 LGTGFSQSINDYFDRDVDAINE-PQRPIPSGIISLREVRWNWLVLTVA 95 (283)
T ss_pred HHHHHHHHHHhHhhhCcccCCC-CCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 4567778999999999999765 334433 3445555555544433
No 71
>PLN00012 chlorophyll synthetase; Provisional
Probab=79.65 E-value=12 Score=37.66 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhCCChHHHHhcCCcccchhhC---hHhHHHHH
Q 019185 267 IFSIVLSLLKDIPDVEGDKKSGIRTLPVILG---KERVLSMS 305 (345)
Q Consensus 267 l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG---~k~a~~l~ 305 (345)
+...+..++||+-|.|.|++.+ ++=|..-| ++.+..+.
T Consensus 134 L~~~~an~iNDy~D~~iD~~~~-~~Rpi~sG~Is~~~al~~~ 174 (375)
T PLN00012 134 FLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQI 174 (375)
T ss_pred HHHHHHHHHHCeecHhhhccCC-CCCCcCCCccCHHHHHHHH
Confidence 4456678999999999998875 44454444 44454433
No 72
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=79.44 E-value=13 Score=35.41 Aligned_cols=42 Identities=21% Similarity=0.123 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhCCChHHHHhcCCcccchhhC---hHhHHHHHHHHH
Q 019185 267 IFSIVLSLLKDIPDVEGDKKSGIRTLPVILG---KERVLSMSTGIL 309 (345)
Q Consensus 267 l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG---~k~a~~l~~~ll 309 (345)
+...+..++||+-|+|.|+.+. ++-|..-| ++.+..+...+.
T Consensus 48 ~~~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l~ 92 (277)
T PRK12883 48 LGCSGGNTINDYFDYEIDKINR-PNRPLPRGAMSRKAALYYSLLLF 92 (277)
T ss_pred HHHHHHhHHHhhhhHhccccCC-CCCCCCCCccCHHHHHHHHHHHH
Confidence 3346778999999999999754 66666544 455555444443
No 73
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=79.21 E-value=11 Score=36.00 Aligned_cols=44 Identities=20% Similarity=0.250 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhCCChHHHHhcCC-cccchhhC---hHhHHHHHHHHH
Q 019185 266 AIFSIVLSLLKDIPDVEGDKKSGI-RTLPVILG---KERVLSMSTGIL 309 (345)
Q Consensus 266 ~l~~~~~~i~~di~DiegDr~~Gi-~TlpV~lG---~k~a~~l~~~ll 309 (345)
.+...+-..+||+-|+|-|++..+ ++-|..-| .+.+..+...+.
T Consensus 55 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~ 102 (285)
T PRK12847 55 VLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLFILL 102 (285)
T ss_pred HHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHHHHHHHHHHHH
Confidence 355677789999999999987443 34554445 455544444443
No 74
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=78.37 E-value=14 Score=35.17 Aligned_cols=48 Identities=15% Similarity=0.118 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhhCCChHHHHhcCC-cccch---hhChHhHHHHHHHHHHH
Q 019185 264 FSAIFSIVLSLLKDIPDVEGDKKSGI-RTLPV---ILGKERVLSMSTGILLM 311 (345)
Q Consensus 264 ~~~l~~~~~~i~~di~DiegDr~~Gi-~TlpV---~lG~k~a~~l~~~ll~~ 311 (345)
...+...+-..+||+-|.|-|++..+ +.=|. ++..+.+..++..+..+
T Consensus 43 ~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~~~~ 94 (280)
T TIGR01473 43 GTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLLGVL 94 (280)
T ss_pred HHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 33455677789999999999997443 33444 34456666665555443
No 75
>PRK08238 hypothetical protein; Validated
Probab=78.33 E-value=12 Score=38.93 Aligned_cols=48 Identities=23% Similarity=0.280 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhCCChHHHHhcCC-cccch---hhChHhHHHHHHHHHHHH
Q 019185 265 SAIFSIVLSLLKDIPDVEGDKKSGI-RTLPV---ILGKERVLSMSTGILLMA 312 (345)
Q Consensus 265 ~~l~~~~~~i~~di~DiegDr~~Gi-~TlpV---~lG~k~a~~l~~~ll~~a 312 (345)
+++...+..++||+-|+|.||++-+ +.=|. ++..+.+..++..++.++
T Consensus 235 ~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~ 286 (479)
T PRK08238 235 FSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAG 286 (479)
T ss_pred HHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3455677899999999999999742 44453 444455655555554443
No 76
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=77.70 E-value=14 Score=35.31 Aligned_cols=48 Identities=10% Similarity=0.088 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhhCCChHHHHhcCC-cccch---hhChHhHHHHHHHHHHH
Q 019185 264 FSAIFSIVLSLLKDIPDVEGDKKSGI-RTLPV---ILGKERVLSMSTGILLM 311 (345)
Q Consensus 264 ~~~l~~~~~~i~~di~DiegDr~~Gi-~TlpV---~lG~k~a~~l~~~ll~~ 311 (345)
...+...+-..+||+-|+|-|++..+ +.=|. ++.++.+..+...++.+
T Consensus 44 ~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~ 95 (279)
T PRK12869 44 GGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSALSAL 95 (279)
T ss_pred HHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHH
Confidence 33355677799999999999998654 33333 34555665555444333
No 77
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=77.35 E-value=11 Score=36.24 Aligned_cols=45 Identities=11% Similarity=-0.048 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHhhCCChHHHHhcCC-cccchhhC---hHhHHHHHH
Q 019185 262 VAFSAIFSIVLSLLKDIPDVEGDKKSGI-RTLPVILG---KERVLSMST 306 (345)
Q Consensus 262 ~l~~~l~~~~~~i~~di~DiegDr~~Gi-~TlpV~lG---~k~a~~l~~ 306 (345)
.+...+...+-..+||+-|+|-|++.-+ ++=|..-| .+.+..+..
T Consensus 45 ~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~a~~~~~ 93 (284)
T PRK12888 45 TVAMVGARTFAMAANRIIDREIDARNPRTAGRELVTGAVSVRTAWTGAL 93 (284)
T ss_pred HHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Confidence 3334455577789999999999998753 23343334 344444443
No 78
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=77.31 E-value=16 Score=35.22 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=16.1
Q ss_pred HHHhhCCChHHHHhcCCcc
Q 019185 273 SLLKDIPDVEGDKKSGIRT 291 (345)
Q Consensus 273 ~i~~di~DiegDr~~Gi~T 291 (345)
..+||+-|.|.||+.-+|.
T Consensus 62 y~iND~~D~D~Dr~~prk~ 80 (282)
T PRK12875 62 YGVNDVFDADTDELNPKKD 80 (282)
T ss_pred hcchhhhhhhccccCCCcc
Confidence 4479999999999887775
No 79
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=75.96 E-value=17 Score=34.77 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhCCChHHHHhcCC-cccchhhC---hHhHHHHHHHHH
Q 019185 267 IFSIVLSLLKDIPDVEGDKKSGI-RTLPVILG---KERVLSMSTGIL 309 (345)
Q Consensus 267 l~~~~~~i~~di~DiegDr~~Gi-~TlpV~lG---~k~a~~l~~~ll 309 (345)
+...+-..+||+-|+|-|++..+ +.=|..-| .+.+..+...+.
T Consensus 51 l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~ 97 (281)
T TIGR01474 51 LMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQL 97 (281)
T ss_pred HHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHHHHHHHHHHHH
Confidence 44577789999999999986544 23454445 455555544443
No 80
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=75.56 E-value=9.8 Score=37.23 Aligned_cols=45 Identities=13% Similarity=-0.071 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhhCCChHHHHhcCC-cccchhhCh---HhHHHHH
Q 019185 261 AVAFSAIFSIVLSLLKDIPDVEGDKKSGI-RTLPVILGK---ERVLSMS 305 (345)
Q Consensus 261 ~~l~~~l~~~~~~i~~di~DiegDr~~Gi-~TlpV~lG~---k~a~~l~ 305 (345)
..+.+.+.-.+-+.+||+-|+|-|++.-+ +.-|..-|+ +.+..+.
T Consensus 52 ~~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~is~~~A~~~~ 100 (300)
T PRK12876 52 GGSAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKLLSINFSMLLL 100 (300)
T ss_pred HHHHHHHHHHHHHHHHhHHHhcccCCCCCCCCCCCCCCCCCHHHHHHHH
Confidence 33344445567789999999999998875 445544454 4444444
No 81
>PLN02776 prenyltransferase
Probab=74.87 E-value=61 Score=32.36 Aligned_cols=48 Identities=13% Similarity=0.117 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhhCCChHHHHhcCC-cccch---hhChHhHHHHHHHHH
Q 019185 262 VAFSAIFSIVLSLLKDIPDVEGDKKSGI-RTLPV---ILGKERVLSMSTGIL 309 (345)
Q Consensus 262 ~l~~~l~~~~~~i~~di~DiegDr~~Gi-~TlpV---~lG~k~a~~l~~~ll 309 (345)
.+...+...+-+.+||+-|+|-|++..+ +.=|. ++..+.+..++..+.
T Consensus 35 ~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~~~l~ 86 (341)
T PLN02776 35 CAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAVVVG 86 (341)
T ss_pred HHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 3344455677789999999999988554 34444 444455555544443
No 82
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=73.71 E-value=21 Score=34.90 Aligned_cols=46 Identities=15% Similarity=0.050 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhhCCChHHHHhcCC-cccchhhC---hHhHHHHHHHHH
Q 019185 264 FSAIFSIVLSLLKDIPDVEGDKKSGI-RTLPVILG---KERVLSMSTGIL 309 (345)
Q Consensus 264 ~~~l~~~~~~i~~di~DiegDr~~Gi-~TlpV~lG---~k~a~~l~~~ll 309 (345)
...+...+-..+||+-|+|-|++..+ +.=|..-| ++.+..++..+.
T Consensus 55 g~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l~ 104 (306)
T PRK13362 55 GLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALG 104 (306)
T ss_pred HHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 33455677899999999999987654 23444344 455655555443
No 83
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=72.02 E-value=23 Score=34.22 Aligned_cols=45 Identities=16% Similarity=0.077 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhhCCChHHHHhcCC-cccc---hhhChHhHHHHHHHHH
Q 019185 265 SAIFSIVLSLLKDIPDVEGDKKSGI-RTLP---VILGKERVLSMSTGIL 309 (345)
Q Consensus 265 ~~l~~~~~~i~~di~DiegDr~~Gi-~Tlp---V~lG~k~a~~l~~~ll 309 (345)
..+...+-.++||+.|+|-|++..+ +.=| -++.++.+..++..+.
T Consensus 53 ~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~ 101 (296)
T PRK04375 53 IALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVLG 101 (296)
T ss_pred HHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHHHH
Confidence 3345577789999999999998543 2334 3445566665554444
No 84
>PRK13591 ubiA prenyltransferase; Provisional
Probab=71.88 E-value=46 Score=32.74 Aligned_cols=24 Identities=17% Similarity=0.122 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhhCCChHHHHhc
Q 019185 264 FSAIFSIVLSLLKDIPDVEGDKKS 287 (345)
Q Consensus 264 ~~~l~~~~~~i~~di~DiegDr~~ 287 (345)
..++.+.+...+||+-|+|.|+.+
T Consensus 66 ~~~L~~~s~~~iNd~~D~eiD~IN 89 (307)
T PRK13591 66 AGGLIIYSVYTLDRALDSEEDAVN 89 (307)
T ss_pred HHHHHHHHHHHHhhhccchhhhcc
Confidence 344667889999999999999774
No 85
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=71.44 E-value=22 Score=33.97 Aligned_cols=45 Identities=16% Similarity=0.116 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhhCCChHHHHhcCC---cccch-hhChHhHHHHHH
Q 019185 262 VAFSAIFSIVLSLLKDIPDVEGDKKSGI---RTLPV-ILGKERVLSMST 306 (345)
Q Consensus 262 ~l~~~l~~~~~~i~~di~DiegDr~~Gi---~TlpV-~lG~k~a~~l~~ 306 (345)
.+...+...+-..+||+-|+|.|++..+ |.+|. ++.++.+..+..
T Consensus 42 ~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~ 90 (282)
T TIGR01475 42 LIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMII 90 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHH
Confidence 3344456688899999999999998632 33332 344555555544
No 86
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=69.46 E-value=37 Score=33.01 Aligned_cols=44 Identities=16% Similarity=0.161 Sum_probs=26.6
Q ss_pred HHHHhhCCChHHHHhc-----CC-----cccch---hhChHhHHHHHHHHHHHHHHH
Q 019185 272 LSLLKDIPDVEGDKKS-----GI-----RTLPV---ILGKERVLSMSTGILLMAYAS 315 (345)
Q Consensus 272 ~~i~~di~DiegDr~~-----Gi-----~TlpV---~lG~k~a~~l~~~ll~~ayl~ 315 (345)
-.++||+-|.|-|+.. ++ ++-|. ++-+|.+..++..+..++.+.
T Consensus 57 g~~iND~~D~~~D~~~v~rtm~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l 113 (297)
T PRK12871 57 GFVLNDYVDRKRDRLDVENTLTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTSAL 113 (297)
T ss_pred HHHHhhHHHHhcCcchHhhhhhccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 3599999999999742 21 23333 445566666666655544333
No 87
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=69.01 E-value=27 Score=33.77 Aligned_cols=44 Identities=16% Similarity=0.055 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhCCChHHHHhcCC-cccchhhC---hHhHHHHHHHHH
Q 019185 266 AIFSIVLSLLKDIPDVEGDKKSGI-RTLPVILG---KERVLSMSTGIL 309 (345)
Q Consensus 266 ~l~~~~~~i~~di~DiegDr~~Gi-~TlpV~lG---~k~a~~l~~~ll 309 (345)
.+...+-..+||+-|+|-|++..+ +.=|..-| .+.+..+...+.
T Consensus 56 ~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~is~~~a~~~~~~~~ 103 (290)
T PRK12870 56 LATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVIAIVAL 103 (290)
T ss_pred HHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCcCHHHHHHHHHHHH
Confidence 345577789999999999976443 23454444 455544444443
No 88
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=66.68 E-value=34 Score=33.11 Aligned_cols=39 Identities=13% Similarity=0.028 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhCCChHHHHhcCC-cccchhhC---hHhHHHH
Q 019185 266 AIFSIVLSLLKDIPDVEGDKKSGI-RTLPVILG---KERVLSM 304 (345)
Q Consensus 266 ~l~~~~~~i~~di~DiegDr~~Gi-~TlpV~lG---~k~a~~l 304 (345)
.+...+-..+||+-|+|-|++.-+ +.=|..-| .+.+..+
T Consensus 52 ~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPL~sG~is~~~A~~~ 94 (291)
T PRK12886 52 VGARTAAMGFNRLIDAEIDARNPRTAGRAIPAGLISKGSAILF 94 (291)
T ss_pred HHHHHHHHHHHhHHhhccCCCCCCCCCCCCCCCCcCHHHHHHH
Confidence 344566688999999999987653 23455555 4555443
No 89
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=63.97 E-value=42 Score=32.10 Aligned_cols=45 Identities=16% Similarity=0.282 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhCCChHHHHhcCC-cccchhhC---hHhHHHHHHHHHHH
Q 019185 267 IFSIVLSLLKDIPDVEGDKKSGI-RTLPVILG---KERVLSMSTGILLM 311 (345)
Q Consensus 267 l~~~~~~i~~di~DiegDr~~Gi-~TlpV~lG---~k~a~~l~~~ll~~ 311 (345)
+...+-..+||+-|.|-|++..+ +.=|..-| ++.+..+...+..+
T Consensus 53 l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~l~~~ 101 (282)
T PRK12848 53 LMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLV 101 (282)
T ss_pred HHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 44577789999999999986443 23444444 45555555444433
No 90
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=63.34 E-value=42 Score=32.86 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhhCCChHHHHhcCC-cccchhhC---hHhHHHHHH
Q 019185 265 SAIFSIVLSLLKDIPDVEGDKKSGI-RTLPVILG---KERVLSMST 306 (345)
Q Consensus 265 ~~l~~~~~~i~~di~DiegDr~~Gi-~TlpV~lG---~k~a~~l~~ 306 (345)
..+...+-..+||+-|.|-|++..+ +.=|..-| .+.+..+..
T Consensus 81 ~~l~~~a~~~~Nd~~Dr~iD~~~~Rt~~RPl~sG~is~~~a~~~~~ 126 (314)
T PRK12878 81 AIAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSGQVSRKQAKVFMV 126 (314)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCcCHHHHHHHHH
Confidence 3345577789999999999987433 12343334 455544433
No 91
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=63.23 E-value=1.2e+02 Score=29.36 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=16.0
Q ss_pred HHHHHHhhCCChHHHHhcCCcccc
Q 019185 270 IVLSLLKDIPDVEGDKKSGIRTLP 293 (345)
Q Consensus 270 ~~~~i~~di~DiegDr~~Gi~Tlp 293 (345)
.++.-+||+-|.|.|..+.++.=+
T Consensus 48 ~am~~~Ndy~D~~~d~dn~r~~g~ 71 (282)
T PRK13105 48 LAMYGINDVFDYESDLRNPRKGGV 71 (282)
T ss_pred HHHHhhhhhhhhhcCCCCcccCCC
Confidence 333455999888888877665433
No 92
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=61.62 E-value=56 Score=31.83 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhhCCChHHHHhcCC-cccchhhC---hHhHHHHH
Q 019185 262 VAFSAIFSIVLSLLKDIPDVEGDKKSGI-RTLPVILG---KERVLSMS 305 (345)
Q Consensus 262 ~l~~~l~~~~~~i~~di~DiegDr~~Gi-~TlpV~lG---~k~a~~l~ 305 (345)
.+...+...+-..+||+-|+|-|++.-+ +.=|..-| .+.+..+.
T Consensus 55 ~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~RPl~sG~is~~~A~~~~ 102 (300)
T PRK13106 55 FLALFFLRTAGMTNDNLADLEIDAKNPRTKNRPLVTGAIKISEAKALI 102 (300)
T ss_pred HHHHHHHHHHHHHHHhhHHhccccCCCccCCCCCCCCCcCHHHHHHHH
Confidence 3334455677789999999999988742 23444444 45554443
No 93
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=60.39 E-value=58 Score=31.43 Aligned_cols=68 Identities=13% Similarity=0.159 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhCCChHH--HHhcCCcccchhhC-hHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 019185 266 AIFSIVLSLLKDIPDVEG--DKKSGIRTLPVILG-KERVLSMSTGILLMAYASAALAGVFSPILLCKLVTMIG 335 (345)
Q Consensus 266 ~l~~~~~~i~~di~Dieg--Dr~~Gi~TlpV~lG-~k~a~~l~~~ll~~ayl~~il~~~~~~~~~~~~~~~~~ 335 (345)
.+...+..+.||..|.+. |++. ..+..-..| .+..++....++.++....+....... ++..++..+|
T Consensus 45 l~~q~~~N~~Ndy~D~~~G~D~~~-~~~~~~~~~~~~~v~~~~~~~~~ia~~~g~~L~~~~~-~~~l~lg~~g 115 (285)
T TIGR02235 45 ILILAWINLTNDVFDSDTGIDRFK-LHSIVNLTGSRSLVFWLANFFLLIGLVGIAALSWRWQ-ITVLALVGLC 115 (285)
T ss_pred HHHHHHHHHHHhHHHHhcCCCccc-cCCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHH
Confidence 355688899999999877 6532 112111112 344555555555555544444444333 3334444443
No 94
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=60.00 E-value=65 Score=31.13 Aligned_cols=42 Identities=12% Similarity=0.019 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhCCChHHHHhcCC-cccchhhC---hHhHHHHHHHH
Q 019185 267 IFSIVLSLLKDIPDVEGDKKSGI-RTLPVILG---KERVLSMSTGI 308 (345)
Q Consensus 267 l~~~~~~i~~di~DiegDr~~Gi-~TlpV~lG---~k~a~~l~~~l 308 (345)
+...+-..+||+-|+|-|++.-+ +.=|..-| ++.+..+...+
T Consensus 58 l~~~a~~~~Nd~~DrdiD~~~~RT~~RPl~sG~is~~~a~~~~~~~ 103 (291)
T PRK12874 58 SARNFAMAFNRLVDRDIDKDNPRTANRPSVDGRISVKSMVLFIVLN 103 (291)
T ss_pred HHHHHHHHHHhhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHHH
Confidence 34455678999999999988753 23343334 45554444433
No 95
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=56.94 E-value=77 Score=30.57 Aligned_cols=58 Identities=12% Similarity=0.168 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhCCChHH-----HHhcCCcccch-hhChHhHHHHHHHHHHHHHHHHHHHHHHh
Q 019185 266 AIFSIVLSLLKDIPDVEG-----DKKSGIRTLPV-ILGKERVLSMSTGILLMAYASAALAGVFS 323 (345)
Q Consensus 266 ~l~~~~~~i~~di~Dieg-----Dr~~Gi~TlpV-~lG~k~a~~l~~~ll~~ayl~~il~~~~~ 323 (345)
.+...+..+.||+.|.+. |+..+.|.++. .+-.|.+++++..++.++.+..+......
T Consensus 38 ~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~~~v~~~~~~~~~~a~~~Gi~l~~~~ 101 (284)
T TIGR00751 38 VLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITPREVKTALITSVALGALSGLVLALLA 101 (284)
T ss_pred HHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356688899999999844 44334454432 34456677777666665555555444433
No 96
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=56.34 E-value=74 Score=30.70 Aligned_cols=49 Identities=16% Similarity=0.173 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhhCCChHHHHhcCCcc----cch---hhChHhHHHHHHHHHHHHH
Q 019185 265 SAIFSIVLSLLKDIPDVEGDKKSGIRT----LPV---ILGKERVLSMSTGILLMAY 313 (345)
Q Consensus 265 ~~l~~~~~~i~~di~DiegDr~~Gi~T----lpV---~lG~k~a~~l~~~ll~~ay 313 (345)
..+...+..+.||+.|.|.|+....|| -|. ++-.+.+..+...+..++.
T Consensus 49 ~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~r~l~~G~is~~~~~~~~~~~~~ia~ 104 (296)
T PRK05951 49 YFLLHASLNVFNDYKDYVLDCDHHETTGYRQHPIQAGIMTLGHLRVLGIALGAIAL 104 (296)
T ss_pred HHHHHHHHHHHHhHHHHhcCCccccccCCCCCccccCCcCHHHHHHHHHHHHHHHH
Confidence 335567788999999966655543322 222 3455666666666544443
No 97
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=55.35 E-value=83 Score=30.02 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhCCChHH--HHh---cCCcccch-hhChHhHHHHHHHHHHHHHHH
Q 019185 265 SAIFSIVLSLLKDIPDVEG--DKK---SGIRTLPV-ILGKERVLSMSTGILLMAYAS 315 (345)
Q Consensus 265 ~~l~~~~~~i~~di~Dieg--Dr~---~Gi~TlpV-~lG~k~a~~l~~~ll~~ayl~ 315 (345)
..+...+...+||+-|.|. |++ .+.|.++. ++-.+.+.+++..+..++.+.
T Consensus 47 ~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~l~~G~is~~~~~~~~~~~~~~~~~~ 103 (293)
T PRK06080 47 ALLLQIATNLANDYGDYVKGTDTEDRVGPLRAIGRGGISPKQVKRAAIAFFGLAALL 103 (293)
T ss_pred HHHHHHHHHHHHhHHHhccCCCcccccCCcccccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3355677889999999853 532 22233322 334566666665555444333
No 98
>PLN02878 homogentisate phytyltransferase
Probab=51.74 E-value=65 Score=31.33 Aligned_cols=38 Identities=26% Similarity=0.336 Sum_probs=26.1
Q ss_pred HHHHHHhhCCChHHHHhcCCcccchhhCh---HhHHHHHHHH
Q 019185 270 IVLSLLKDIPDVEGDKKSGIRTLPVILGK---ERVLSMSTGI 308 (345)
Q Consensus 270 ~~~~i~~di~DiegDr~~Gi~TlpV~lG~---k~a~~l~~~l 308 (345)
.-+-=+||+.|+|-|| .++...|.-=|+ +.+..++..+
T Consensus 37 iyivglNd~~D~EIDk-INkP~rPIpSG~iS~~~a~~~~~~~ 77 (280)
T PLN02878 37 IYIVGLNQLYDIEIDK-VNKPYLPLASGEFSVATGVAIVTSF 77 (280)
T ss_pred hheechhhhhhhcccc-cCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 3445579999999995 677888887776 4444444333
No 99
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=51.69 E-value=78 Score=31.01 Aligned_cols=68 Identities=13% Similarity=0.076 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhCCChHHHHhc-----CCcccc-hhhChHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 019185 267 IFSIVLSLLKDIPDVEGDKKS-----GIRTLP-VILGKERVLSMSTGILLMAYASAALAGVFSPILLCKLVTMIG 335 (345)
Q Consensus 267 l~~~~~~i~~di~DiegDr~~-----Gi~Tlp-V~lG~k~a~~l~~~ll~~ayl~~il~~~~~~~~~~~~~~~~~ 335 (345)
+...+..++||+.|.+.|... +.|.++ -.+-+|.++++...++.++.+..+...+.. .++...+..+|
T Consensus 50 ~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~-g~~~l~igl~g 123 (317)
T PRK13387 50 AFDIATTAINNYMDFKKALDTADYVGIGNGIGQHGLKPRNVLTVILLMYVVAAILGVYLCMNT-SWLLLVIGLIC 123 (317)
T ss_pred HHHHHHHHHHhHHHHhcCCCcccccCCcchhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHH
Confidence 456788999999998775443 223222 234456777777777666666555554433 23334444444
No 100
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=49.04 E-value=1e+02 Score=30.35 Aligned_cols=75 Identities=16% Similarity=0.073 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhCCChH------HHHhcCCcccchhhChHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 019185 267 IFSIVLSLLKDIPDVE------GDKKSGIRTLPVILGKERVLSMSTGILLMAYASAALAGVFSPILLCKLVTMIGHSVLG 340 (345)
Q Consensus 267 l~~~~~~i~~di~Die------gDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~il~~~~~~~~~~~~~~~~~~~~~~ 340 (345)
++.....+.||+.|.+ ||-..+...+.++=+.|+...+...+...+....+.+.+....-|. .+...+-++.+
T Consensus 55 ~iq~~vN~~NdY~D~~KG~D~~g~~~~~~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~-~l~lG~l~~~~ 133 (303)
T COG1575 55 LLQILVNLANDYFDYKKGTDTHGPDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWL-VLLLGLLCIAA 133 (303)
T ss_pred HHHHHHHHHHhhhhhhcCCCCCCCccccccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHh
Confidence 5567778889986654 3445566667777777766666555554444444444444555565 33333344444
Q ss_pred HH
Q 019185 341 FI 342 (345)
Q Consensus 341 ~~ 342 (345)
++
T Consensus 134 g~ 135 (303)
T COG1575 134 GI 135 (303)
T ss_pred ee
Confidence 44
No 101
>PLN02922 prenyltransferase
Probab=47.08 E-value=1.1e+02 Score=30.10 Aligned_cols=47 Identities=21% Similarity=0.314 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhhCCChHH--HHhcCCcccchhh-ChHhHHHHHHHHHHHHH
Q 019185 266 AIFSIVLSLLKDIPDVEG--DKKSGIRTLPVIL-GKERVLSMSTGILLMAY 313 (345)
Q Consensus 266 ~l~~~~~~i~~di~Dieg--Dr~~Gi~TlpV~l-G~k~a~~l~~~ll~~ay 313 (345)
.++..+..+.||..|.+. |++. .++..-.. -++..+++...++.++.
T Consensus 61 ~l~q~~~N~~NDy~D~~~G~D~~~-~~~~~~~~~s~~~v~~~~~~~~~la~ 110 (315)
T PLN02922 61 VLVITWLNLSNDAYDADTGVDKNK-KESVVNLVGSRRGVLAAAIGCLALGA 110 (315)
T ss_pred HHHHHHHHHHhhhhHhccCcCccc-CCCCCCcccCHHHHHHHHHHHHHHHH
Confidence 355678889999988766 3321 11111112 44445555555554444
No 102
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=46.35 E-value=1.2e+02 Score=29.66 Aligned_cols=68 Identities=13% Similarity=0.089 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhCCChH--HHHhcCCcccchh-hChHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 019185 266 AIFSIVLSLLKDIPDVE--GDKKSGIRTLPVI-LGKERVLSMSTGILLMAYASAALAGVFSPILLCKLVTMIG 335 (345)
Q Consensus 266 ~l~~~~~~i~~di~Die--gDr~~Gi~TlpV~-lG~k~a~~l~~~ll~~ayl~~il~~~~~~~~~~~~~~~~~ 335 (345)
.+...+..++||+.|.+ .|++. .+...-. ...|.+.++...++.++.+..+...+. ..++..++..+|
T Consensus 58 ~l~q~~~N~~NDy~D~~~G~D~~~-~~~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~-~g~~~l~ig~~g 128 (304)
T PRK07419 58 ILILAWENLSNDVFDADTGIDKNK-FHSVVNLTGNKSLVFWLANLFLLLGLLGILAIALQ-SDWTVLGLVLLC 128 (304)
T ss_pred HHHHHHHHHHHHHHHHhccCCccc-ccCcccccCcHHHHHHHHHHHHHHHHHHHHHHHHh-hcHHHHHHHHHH
Confidence 35567889999999988 46531 1111111 134556666666655544444444332 234445555544
No 103
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=40.86 E-value=20 Score=32.59 Aligned_cols=39 Identities=38% Similarity=0.615 Sum_probs=31.4
Q ss_pred HHHHHHHHHhhCCChHHHH----------hcCCcccchhhChHhHHHHH
Q 019185 267 IFSIVLSLLKDIPDVEGDK----------KSGIRTLPVILGKERVLSMS 305 (345)
Q Consensus 267 l~~~~~~i~~di~DiegDr----------~~Gi~TlpV~lG~k~a~~l~ 305 (345)
-+..+..+.+|+.|+.+|. +.|+.|+|.....+......
T Consensus 157 ~lG~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~~~~~~~~~ 205 (236)
T cd00867 157 ALGLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILARERAAEYA 205 (236)
T ss_pred HHHHHHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHHHHHHHHHH
Confidence 4557779999999998888 89999999999855555443
No 104
>PRK11383 hypothetical protein; Provisional
Probab=37.64 E-value=2.5e+02 Score=24.69 Aligned_cols=81 Identities=16% Similarity=0.210 Sum_probs=43.6
Q ss_pred HHHHHHhHhccCCccccccc--ccCcchhHHHHHHHHHH-hHHHHHHHhhhhhcCCcccchHHHHHHHHHHHHHHHHHHH
Q 019185 198 VLRCILGAAYSIDLPLLRWK--ASPLMAAVAIVIGNGIN-NVLPYFLHVQKYVLGRPVVFTKPLLFAVAFSAIFSIVLSL 274 (345)
Q Consensus 198 ~l~~~l~~~YS~~~pP~rlK--r~pllg~L~v~~~~g~i-~~lg~~~~~~~~~~g~~~~~~~~~~l~~l~~~l~~~~~~i 274 (345)
..+.+..+.|. +-.|.| ..|. .+...+.+|... ..++.+. .+ ++.++...+.......+++.....++.+
T Consensus 49 ~lglF~avs~Q---K~vRD~~egi~v-t~~f~~~cw~a~l~~i~LL~-iG--LwNA~l~lsEKGfY~~af~lsLFgai~v 121 (145)
T PRK11383 49 VLGLFSAASYQ---KTVRDKYEGIPT-TSIYYMTCLTVFIISVALLM-VG--LWNATLLLSEKGFYGLAFFLSLFGAVAV 121 (145)
T ss_pred HHHHHHHHHHH---HHHhhcccCCCh-hHHHHHHHHHHHHHHHHHHH-HH--HhcCCcchhhhhHHHHHHHHHHHHHHHH
Confidence 45667777777 334666 5554 345555555442 2223322 11 2344444444444444454445567788
Q ss_pred HhhCCChHHHH
Q 019185 275 LKDIPDVEGDK 285 (345)
Q Consensus 275 ~~di~DiegDr 285 (345)
-|+++|...++
T Consensus 122 QKn~RD~~~~~ 132 (145)
T PRK11383 122 QKNIRDAGINP 132 (145)
T ss_pred Hhhhhhhhhcc
Confidence 99999996544
No 105
>PRK10581 geranyltranstransferase; Provisional
Probab=35.73 E-value=33 Score=33.31 Aligned_cols=45 Identities=24% Similarity=0.457 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhCCChH-----------HHHhcCCcccchhhChHhHHHHHHHH
Q 019185 264 FSAIFSIVLSLLKDIPDVE-----------GDKKSGIRTLPVILGKERVLSMSTGI 308 (345)
Q Consensus 264 ~~~l~~~~~~i~~di~Die-----------gDr~~Gi~TlpV~lG~k~a~~l~~~l 308 (345)
+.-.+..+..+..|+.|+. +|.+.|+.|+|+.+|.+.+...+.-.
T Consensus 211 ~g~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a~~~ 266 (299)
T PRK10581 211 YAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDL 266 (299)
T ss_pred HHHHHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHHHHH
Confidence 3345667889999999975 45778999999999998887765444
No 106
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=31.54 E-value=4.3e+02 Score=25.53 Aligned_cols=41 Identities=22% Similarity=0.184 Sum_probs=23.8
Q ss_pred HHHHhHhccCCcccc-ccccc-CcchhHHHHHHHHHHhH-HHHHH
Q 019185 200 RCILGAAYSIDLPLL-RWKAS-PLMAAVAIVIGNGINNV-LPYFL 241 (345)
Q Consensus 200 ~~~l~~~YS~~~pP~-rlKr~-pllg~L~v~~~~g~i~~-lg~~~ 241 (345)
.++..+.|.. +|.. +.|.+ -..|.+..++.|-+.-- +++|.
T Consensus 201 ~~~f~~ly~~-lP~~~~~~~~~~~~Ga~~aai~~~i~~~~f~~Yv 244 (303)
T COG1295 201 TLGFFLLYRF-LPNVRVLKWRDVLPGALLAAILFELGKYLFGYYL 244 (303)
T ss_pred HHHHHHHHHH-cCCccccchHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3566777886 6776 44444 55677766555554322 45554
No 107
>COG3462 Predicted membrane protein [Function unknown]
Probab=27.41 E-value=2.3e+02 Score=23.88 Aligned_cols=28 Identities=21% Similarity=0.146 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCChHH-HHhc
Q 019185 260 FAVAFSAIFSIVLSLLKDIPDVEG-DKKS 287 (345)
Q Consensus 260 l~~l~~~l~~~~~~i~~di~Dieg-Dr~~ 287 (345)
++.+++..+.-...=-+|..|.|+ ||+.
T Consensus 63 ~lvvfm~~~~g~~r~~~~~d~~e~~sRA~ 91 (117)
T COG3462 63 FLVVFMFYILGAVRRGSDDDDAERGSRAE 91 (117)
T ss_pred HHHHHHHHHHHHhcccchhcccccccHHH
Confidence 334444444333333445555555 6553
No 108
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=23.54 E-value=7.2e+02 Score=24.52 Aligned_cols=75 Identities=8% Similarity=-0.113 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHhhCCChHHHHhcCC----cccchhhChHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 019185 262 VAFSAIFSIVLSLLKDIPDVEGDKKSGI----RTLPVILGKERVLSMSTGILLMAYASAALAGVFSPILLCKLVTMIGHS 337 (345)
Q Consensus 262 ~l~~~l~~~~~~i~~di~DiegDr~~Gi----~TlpV~lG~k~a~~l~~~ll~~ayl~~il~~~~~~~~~~~~~~~~~~~ 337 (345)
.+..++-..+-..+|+.-|.|-|++..+ .+..-++..+.+..++.++..+....+ ....-....|...++....+
T Consensus 58 ~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~RP~~~G~i~p~~al~fgl~L~~~g~~~l-~~~vn~laa~l~~~gi~~Yv 136 (304)
T COG0109 58 LLGGALGAGGAGAFNMYIDRDIDALMERTRKRPLVTGLISPREALAFGLVLGVAGFSLL-WFLVNLLAAVLGLFGIFFYV 136 (304)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHhhhhccCCCCCCCccCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 3344455677789999999999987655 344445556777766666544333322 12222334444444444443
No 109
>PF11298 DUF3099: Protein of unknown function (DUF3099); InterPro: IPR021449 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=20.79 E-value=76 Score=24.63 Aligned_cols=21 Identities=14% Similarity=0.341 Sum_probs=11.0
Q ss_pred CChHHHHhcCCcccchhhChH
Q 019185 279 PDVEGDKKSGIRTLPVILGKE 299 (345)
Q Consensus 279 ~DiegDr~~Gi~TlpV~lG~k 299 (345)
+..++|.+.-.+.-.+..|.+
T Consensus 7 ~s~~~d~~~R~r~Y~i~M~~R 27 (73)
T PF11298_consen 7 RSLSQDQRRRRRRYLIMMGIR 27 (73)
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 445666665555545555444
No 110
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=20.41 E-value=4.4e+02 Score=20.83 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=24.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHhhhhhcccccc
Q 019185 145 LTPTFLIEVLKPIVPTIMMNIFVVAINQLSDIAID 179 (345)
Q Consensus 145 ~~~~~l~~~ll~~la~~l~~~a~~~iNDy~D~eiD 179 (345)
.++....++...+++..+...++..-|..+|...|
T Consensus 52 ~t~g~~~g~~~~~~~~~l~~~Yv~~An~~~D~l~~ 86 (91)
T PF04341_consen 52 LTLGIVLGLGQIVFAWVLTWLYVRRANREFDPLAR 86 (91)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHH
Confidence 55554455556666667778888889999998654
Done!