Query 019185
Match_columns 345
No_of_seqs 157 out of 1295
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 12:12:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019185.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/019185hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m0g_A Farnesyl diphosphate sy 42.9 15 0.0005 34.4 3.2 46 265-310 205-261 (297)
2 3lsn_A Geranyltranstransferase 41.4 12 0.00042 35.0 2.4 47 264-310 211-268 (304)
3 3ts7_A Geranyltranstransferase 39.5 12 0.0004 35.6 1.9 46 264-309 217-273 (324)
4 3lom_A Geranyltranstransferase 39.0 13 0.00044 35.1 2.1 46 264-309 218-274 (313)
5 3p8l_A Geranyltranstransferase 34.5 17 0.00058 34.1 2.2 45 265-309 215-270 (302)
6 3p8r_A Geranyltranstransferase 34.1 14 0.00048 34.6 1.5 45 265-309 218-273 (302)
7 4f62_A Geranyltranstransferase 33.5 16 0.00056 34.5 1.8 46 264-309 210-266 (317)
8 2h8o_A Geranyltranstransferase 32.2 18 0.00063 34.3 2.0 43 267-309 253-306 (335)
9 3llw_A Geranyltranstransferase 31.5 40 0.0014 31.6 4.2 46 264-309 218-272 (311)
10 3uca_A Geranyltranstransferase 30.6 21 0.00071 33.9 2.0 45 265-309 240-295 (324)
11 3pde_A Farnesyl-diphosphate sy 30.1 41 0.0014 31.6 4.0 46 265-310 214-270 (309)
12 3kra_B Geranyl diphosphate syn 29.5 81 0.0028 28.8 5.9 53 262-314 66-118 (274)
13 1rtr_A Geranyltranstransferase 28.3 23 0.00077 33.1 1.8 42 264-305 206-258 (301)
14 1rqj_A Geranyltranstransferase 28.1 32 0.0011 31.9 2.9 43 267-309 214-267 (299)
15 2j1p_A Geranylgeranyl pyrophos 26.7 23 0.00078 32.9 1.6 41 265-308 222-262 (293)
16 3npk_A Geranyltranstransferase 20.3 76 0.0026 29.4 3.8 53 264-316 203-264 (291)
No 1
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=42.91 E-value=15 Score=34.42 Aligned_cols=46 Identities=24% Similarity=0.388 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhCCChHH-----------HHhcCCcccchhhChHhHHHHHHHHHH
Q 019185 265 SAIFSIVLSLLKDIPDVEG-----------DKKSGIRTLPVILGKERVLSMSTGILL 310 (345)
Q Consensus 265 ~~l~~~~~~i~~di~Dieg-----------Dr~~Gi~TlpV~lG~k~a~~l~~~ll~ 310 (345)
...+..+..+.+|+.|+.+ |.+.|+.|+|+.+|.+++.....-..-
T Consensus 205 g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~ 261 (297)
T 3m0g_A 205 ATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLVA 261 (297)
T ss_dssp HHHHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHH
Confidence 3345677899999999865 667899999999999998876655443
No 2
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=41.42 E-value=12 Score=35.03 Aligned_cols=47 Identities=21% Similarity=0.317 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhhCCChHH-----------HHhcCCcccchhhChHhHHHHHHHHHH
Q 019185 264 FSAIFSIVLSLLKDIPDVEG-----------DKKSGIRTLPVILGKERVLSMSTGILL 310 (345)
Q Consensus 264 ~~~l~~~~~~i~~di~Dieg-----------Dr~~Gi~TlpV~lG~k~a~~l~~~ll~ 310 (345)
+...+..+..+.+|+.|+.+ |.+.|+.|+|+.+|.+++...+.-..-
T Consensus 211 ~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~ 268 (304)
T 3lsn_A 211 YAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRD 268 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHHH
Confidence 33345677889999988866 567899999999999999876655543
No 3
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=39.46 E-value=12 Score=35.60 Aligned_cols=46 Identities=17% Similarity=0.346 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhhCCChHH-----------HHhcCCcccchhhChHhHHHHHHHHH
Q 019185 264 FSAIFSIVLSLLKDIPDVEG-----------DKKSGIRTLPVILGKERVLSMSTGIL 309 (345)
Q Consensus 264 ~~~l~~~~~~i~~di~Dieg-----------Dr~~Gi~TlpV~lG~k~a~~l~~~ll 309 (345)
+.-.+..+..+..|+.|+.+ |.+.|+.|+|+.+|.+++...+.-..
T Consensus 217 ~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~ 273 (324)
T 3ts7_A 217 YAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEMH 273 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHH
Confidence 33345677788898877754 77889999999999999987665543
No 4
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=39.04 E-value=13 Score=35.11 Aligned_cols=46 Identities=13% Similarity=0.224 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhhCCChHH-----------HHhcCCcccchhhChHhHHHHHHHHH
Q 019185 264 FSAIFSIVLSLLKDIPDVEG-----------DKKSGIRTLPVILGKERVLSMSTGIL 309 (345)
Q Consensus 264 ~~~l~~~~~~i~~di~Dieg-----------Dr~~Gi~TlpV~lG~k~a~~l~~~ll 309 (345)
+..-+..+..+.+|+.|+.+ |.+.|+.|+|+.+|.+++...+.-..
T Consensus 218 ~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~ 274 (313)
T 3lom_A 218 YGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVHY 274 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHHH
Confidence 33345677789999888755 67889999999999999987665543
No 5
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=34.52 E-value=17 Score=34.07 Aligned_cols=45 Identities=20% Similarity=0.295 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhhCCChH-----------HHHhcCCcccchhhChHhHHHHHHHHH
Q 019185 265 SAIFSIVLSLLKDIPDVE-----------GDKKSGIRTLPVILGKERVLSMSTGIL 309 (345)
Q Consensus 265 ~~l~~~~~~i~~di~Die-----------gDr~~Gi~TlpV~lG~k~a~~l~~~ll 309 (345)
...+..+..+.+|+.|+. .|.+.|+.|+|+.+|.+++...+.-..
T Consensus 215 g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~~ 270 (302)
T 3p8l_A 215 AHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQL 270 (302)
T ss_dssp HHHHHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 334567778888887774 578889999999999999987765554
No 6
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=34.10 E-value=14 Score=34.58 Aligned_cols=45 Identities=22% Similarity=0.370 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhhCCChHH-----------HHhcCCcccchhhChHhHHHHHHHHH
Q 019185 265 SAIFSIVLSLLKDIPDVEG-----------DKKSGIRTLPVILGKERVLSMSTGIL 309 (345)
Q Consensus 265 ~~l~~~~~~i~~di~Dieg-----------Dr~~Gi~TlpV~lG~k~a~~l~~~ll 309 (345)
...+..+..+.+|+.|+.+ |.+.|+.|+|+.+|.+++...+.-..
T Consensus 218 g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~ 273 (302)
T 3p8r_A 218 AEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLL 273 (302)
T ss_dssp HHHHHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHHH
Confidence 3345577788888877654 67889999999999999887665543
No 7
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=33.49 E-value=16 Score=34.50 Aligned_cols=46 Identities=17% Similarity=0.372 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhhCCChHH-----------HHhcCCcccchhhChHhHHHHHHHHH
Q 019185 264 FSAIFSIVLSLLKDIPDVEG-----------DKKSGIRTLPVILGKERVLSMSTGIL 309 (345)
Q Consensus 264 ~~~l~~~~~~i~~di~Dieg-----------Dr~~Gi~TlpV~lG~k~a~~l~~~ll 309 (345)
+...+..+..+..|+.|+.+ |.+.|+.|+|+.+|.+++...+.-..
T Consensus 210 ~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~ 266 (317)
T 4f62_A 210 YAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRLH 266 (317)
T ss_dssp HHHHHHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 33345677889999888754 67789999999999999987765543
No 8
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=32.15 E-value=18 Score=34.33 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhCCChHH-----------HHhcCCcccchhhChHhHHHHHHHHH
Q 019185 267 IFSIVLSLLKDIPDVEG-----------DKKSGIRTLPVILGKERVLSMSTGIL 309 (345)
Q Consensus 267 l~~~~~~i~~di~Dieg-----------Dr~~Gi~TlpV~lG~k~a~~l~~~ll 309 (345)
-+..+..+.+|+.|+.+ |.+.|+.|+|+.+|.+.+.....-..
T Consensus 253 ~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~~ 306 (335)
T 2h8o_A 253 KIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQV 306 (335)
T ss_dssp HHHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 45577788899888754 66789999999999988876665543
No 9
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=31.55 E-value=40 Score=31.64 Aligned_cols=46 Identities=26% Similarity=0.403 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhhCCChHHHH---------hcCCcccchhhChHhHHHHHHHHH
Q 019185 264 FSAIFSIVLSLLKDIPDVEGDK---------KSGIRTLPVILGKERVLSMSTGIL 309 (345)
Q Consensus 264 ~~~l~~~~~~i~~di~DiegDr---------~~Gi~TlpV~lG~k~a~~l~~~ll 309 (345)
+.-.+..+..+.+|+.|+.+|. +.|+.|+|+.+|.+++.....-++
T Consensus 218 ~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~~~~~~~~ 272 (311)
T 3llw_A 218 FGLKMGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERANNYAQTLK 272 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-------------CCSCHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHHHHHHHHHH
Confidence 3334567789999999998775 579999999999999876555443
No 10
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=30.58 E-value=21 Score=33.87 Aligned_cols=45 Identities=22% Similarity=0.273 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhhCCChH-----------HHHhcCCcccchhhChHhHHHHHHHHH
Q 019185 265 SAIFSIVLSLLKDIPDVE-----------GDKKSGIRTLPVILGKERVLSMSTGIL 309 (345)
Q Consensus 265 ~~l~~~~~~i~~di~Die-----------gDr~~Gi~TlpV~lG~k~a~~l~~~ll 309 (345)
...+..+..+.+|+.|+. .|.+.|+.|+|+.+|.+++...+.-..
T Consensus 240 g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~~~~ 295 (324)
T 3uca_A 240 GYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNIT 295 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCCC-----------------CHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHHHHH
Confidence 334567778888887774 477889999999999999887665543
No 11
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=30.10 E-value=41 Score=31.59 Aligned_cols=46 Identities=22% Similarity=0.254 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhhCCChH-----------HHHhcCCcccchhhChHhHHHHHHHHHH
Q 019185 265 SAIFSIVLSLLKDIPDVE-----------GDKKSGIRTLPVILGKERVLSMSTGILL 310 (345)
Q Consensus 265 ~~l~~~~~~i~~di~Die-----------gDr~~Gi~TlpV~lG~k~a~~l~~~ll~ 310 (345)
...+..+..+..|+.|+. .|.+.|+.|+|+.+|.+++.....-++-
T Consensus 214 g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~~~~ 270 (309)
T 3pde_A 214 ADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDTIH 270 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHHHHH
Confidence 334567778899988875 5778899999999999998766555443
No 12
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=29.48 E-value=81 Score=28.85 Aligned_cols=53 Identities=13% Similarity=0.214 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHHH
Q 019185 262 VAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAYA 314 (345)
Q Consensus 262 ~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl 314 (345)
+..+=++-.+..+-.|+++.++|.+.|+.|.-.++|...+...+-.++..++-
T Consensus 66 A~aiEliH~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~ 118 (274)
T 3kra_B 66 AAAIHLVHAAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFE 118 (274)
T ss_dssp HHHHHHHHHHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHHH
Confidence 33344556777888999944446679999999999999887777666655543
No 13
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=28.26 E-value=23 Score=33.10 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhCCChHH-----------HHhcCCcccchhhChHhHHHHH
Q 019185 264 FSAIFSIVLSLLKDIPDVEG-----------DKKSGIRTLPVILGKERVLSMS 305 (345)
Q Consensus 264 ~~~l~~~~~~i~~di~Dieg-----------Dr~~Gi~TlpV~lG~k~a~~l~ 305 (345)
+..-+..+..+.+|+.|+.+ |.+.|+.|+|+.+|.+++...+
T Consensus 206 ~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a 258 (301)
T 1rtr_A 206 YSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKL 258 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHHHH
No 14
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=28.09 E-value=32 Score=31.92 Aligned_cols=43 Identities=26% Similarity=0.452 Sum_probs=32.7
Q ss_pred HHHHHHHHHhhCCChH-----------HHHhcCCcccchhhChHhHHHHHHHHH
Q 019185 267 IFSIVLSLLKDIPDVE-----------GDKKSGIRTLPVILGKERVLSMSTGIL 309 (345)
Q Consensus 267 l~~~~~~i~~di~Die-----------gDr~~Gi~TlpV~lG~k~a~~l~~~ll 309 (345)
.+..+..+.+|+.|+. .|.+.|+.|+|+.+|.+++.....-..
T Consensus 214 ~lG~aFQi~DD~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~ 267 (299)
T 1rqj_A 214 SIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLI 267 (299)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHhCCChhhHHHcCCCcHHHHHHHHHHHHHHHHHH
Confidence 4556778888887775 456779999999999988876655443
No 15
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=26.68 E-value=23 Score=32.90 Aligned_cols=41 Identities=20% Similarity=0.387 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHH
Q 019185 265 SAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGI 308 (345)
Q Consensus 265 ~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~l 308 (345)
...+..+..+.+|+.|+.+|. +.|+|+.+|.+.+...+.-.
T Consensus 222 g~~lG~aFQI~DDiLD~~~~~---K~T~p~l~gle~a~~~a~~~ 262 (293)
T 2j1p_A 222 ARCIGLLFQVVDDILDVTKSS---KLTYPKLMGLEKSREFAEKL 262 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCc---cccHHHHHHHHHHHHHHHHH
Confidence 334567789999999999998 89999999999888766554
No 16
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=20.30 E-value=76 Score=29.39 Aligned_cols=53 Identities=15% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhCCChHHHHh---------cCCcccchhhChHhHHHHHHHHHHHHHHHH
Q 019185 264 FSAIFSIVLSLLKDIPDVEGDKK---------SGIRTLPVILGKERVLSMSTGILLMAYASA 316 (345)
Q Consensus 264 ~~~l~~~~~~i~~di~DiegDr~---------~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~ 316 (345)
+..-+..+..+.+|+.|+.+|.. .|+.|+|+.+|.+++.....-++--+.-.+
T Consensus 203 ~g~~lGlaFQI~DDiLD~~gd~~~~GK~~~~d~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l 264 (291)
T 3npk_A 203 LGLKLGLIFQINDDIIDVTTSQEQSGKPTNNDIHKNSFVNLLGLEQAIKTKENLLNECEQDL 264 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHC----------------CCHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCChHHHCCccchhcCcchHHHHHHHHHhHHHHHHHHHHHHHHH
Done!