Query 019185
Match_columns 345
No_of_seqs 157 out of 1295
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 12:12:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/019185.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/019185hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rqja_ a.128.1.1 (A:) Farnesy 35.0 24 0.0018 30.3 5.6 55 262-316 70-125 (299)
2 d1rtra_ a.128.1.1 (A:) Farnesy 29.1 7.6 0.00056 33.6 1.0 38 267-304 208-256 (290)
3 d1rqja_ a.128.1.1 (A:) Farnesy 26.0 13 0.00094 32.2 2.0 41 266-306 213-264 (299)
4 d1rtra_ a.128.1.1 (A:) Farnesy 23.5 45 0.0032 28.3 5.2 54 262-315 67-121 (290)
5 d1v4ea_ a.128.1.1 (A:) Octopre 13.7 66 0.0048 27.1 3.8 51 262-313 59-109 (280)
6 d2e74g1 f.23.26.1 (G:9-35) Pet 12.8 33 0.0024 18.8 0.9 11 68-78 16-26 (27)
7 d2q80a1 a.128.1.1 (A:6-296) Ge 10.7 44 0.0032 28.4 1.5 33 264-296 171-214 (291)
8 d1y29a_ g.3.6.2 (A:) Huwentoxi 9.9 40 0.0029 18.5 0.6 8 55-62 20-27 (28)
9 d1fpsa_ a.128.1.1 (A:) Farnesy 9.8 26 0.0019 30.8 -0.4 37 264-300 226-272 (348)
10 d1v4ea_ a.128.1.1 (A:) Octopre 9.5 25 0.0018 30.0 -0.7 35 267-301 187-231 (280)
No 1
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=35.01 E-value=24 Score=30.28 Aligned_cols=55 Identities=16% Similarity=0.290 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHhhCCChHH-HHhcCCcccchhhChHhHHHHHHHHHHHHHHHH
Q 019185 262 VAFSAIFSIVLSLLKDIPDVEG-DKKSGIRTLPVILGKERVLSMSTGILLMAYASA 316 (345)
Q Consensus 262 ~l~~~l~~~~~~i~~di~Dieg-Dr~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~~ 316 (345)
++.+=++-.+..+-.|++|.+. |.+.|..|+-.++|.+.|...+-.++..++-.+
T Consensus 70 A~aiEllH~asLiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l 125 (299)
T d1rqja_ 70 AAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSIL 125 (299)
T ss_dssp HHHHHHHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccchhhhhhhcccccccceeeeCcchhhhhcchHHHHHHHHH
Confidence 3334466677788899999887 589999999999999998887777765555443
No 2
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=29.10 E-value=7.6 Score=33.62 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhCCChH-----------HHHhcCCcccchhhChHhHHHH
Q 019185 267 IFSIVLSLLKDIPDVE-----------GDKKSGIRTLPVILGKERVLSM 304 (345)
Q Consensus 267 l~~~~~~i~~di~Die-----------gDr~~Gi~TlpV~lG~k~a~~l 304 (345)
-+..+..+.+|+.|+. .|.+.|+.|+|+.+|.+.+...
T Consensus 208 ~lG~aFQi~DD~lD~~g~~~~~GK~~g~Di~~gK~T~p~i~a~~~a~~~ 256 (290)
T d1rtra_ 208 HLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDK 256 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchHhhccCcccHhhcCCccHHHHHHHHHHHHH
Confidence 4567778899988875 4677899999999998877543
No 3
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=26.05 E-value=13 Score=32.19 Aligned_cols=41 Identities=27% Similarity=0.428 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhCCChH-----------HHHhcCCcccchhhChHhHHHHHH
Q 019185 266 AIFSIVLSLLKDIPDVE-----------GDKKSGIRTLPVILGKERVLSMST 306 (345)
Q Consensus 266 ~l~~~~~~i~~di~Die-----------gDr~~Gi~TlpV~lG~k~a~~l~~ 306 (345)
.-+..+..+..|+.|+. .|.+.|+.|+|+.+|.+++.....
T Consensus 213 ~~lGiaFQi~DD~lD~~~~~~~~GK~~g~Dl~egK~Tlp~i~~le~a~~~~~ 264 (299)
T d1rqja_ 213 ESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKAR 264 (299)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccchhhcCCchhhHHHCCChhHHHHHHHHHHHHHHH
Confidence 34567778899888775 478889999999999988765443
No 4
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=23.51 E-value=45 Score=28.33 Aligned_cols=54 Identities=15% Similarity=0.213 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHhhCCChHHH-HhcCCcccchhhChHhHHHHHHHHHHHHHHH
Q 019185 262 VAFSAIFSIVLSLLKDIPDVEGD-KKSGIRTLPVILGKERVLSMSTGILLMAYAS 315 (345)
Q Consensus 262 ~l~~~l~~~~~~i~~di~DiegD-r~~Gi~TlpV~lG~k~a~~l~~~ll~~ayl~ 315 (345)
++.+=++-.+..+-.|++|.++| .+.|+.|.-.++|.+.+....-.++..++-.
T Consensus 67 A~avEllH~asLIHDDI~d~D~~~~RRg~pt~~~~~g~~~Ail~Gd~l~~~a~~l 121 (290)
T d1rtra_ 67 AIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFEL 121 (290)
T ss_dssp HHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhhhhhhhhcchhhHHHhhhhHHHHcCcchhHHHHHH
Confidence 33334666777888999998775 5889999999999998888777666555443
No 5
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=13.75 E-value=66 Score=27.06 Aligned_cols=51 Identities=18% Similarity=0.297 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHhhCCChHHHHhcCCcccchhhChHhHHHHHHHHHHHHH
Q 019185 262 VAFSAIFSIVLSLLKDIPDVEGDKKSGIRTLPVILGKERVLSMSTGILLMAY 313 (345)
Q Consensus 262 ~l~~~l~~~~~~i~~di~DiegDr~~Gi~TlpV~lG~k~a~~l~~~ll~~ay 313 (345)
++.+=++-.+..+-.|+.| +.|.+.|..|.-.++|...+....-.++..++
T Consensus 59 AaaiEliH~asLIhDDi~D-~s~~RRG~pt~h~~~g~~~ail~gd~l~~~a~ 109 (280)
T d1v4ea_ 59 LAALELVHLASLLHDDVID-GARFRRGKETINFMYGDKAAVAAGDLVLVSAF 109 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHhh-hcccccccchhhhccchhhhhhhHHHHHHhhh
Confidence 3333355566777888887 67889999999999999988877766655444
No 6
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=12.83 E-value=33 Score=18.83 Aligned_cols=11 Identities=18% Similarity=0.543 Sum_probs=8.1
Q ss_pred hhHHhhccccc
Q 019185 68 DMMNRYHKPLK 78 (345)
Q Consensus 68 ~~~~~~~~~~~ 78 (345)
..||+|+||++
T Consensus 16 aayqqykrpne 26 (27)
T d2e74g1 16 AAYQQYKRPNE 26 (27)
T ss_dssp HHHHHTTSCCC
T ss_pred HHHHHhcCCCC
Confidence 36888888765
No 7
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.68 E-value=44 Score=28.41 Aligned_cols=33 Identities=15% Similarity=0.334 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhCCChH-----------HHHhcCCcccchhh
Q 019185 264 FSAIFSIVLSLLKDIPDVE-----------GDKKSGIRTLPVIL 296 (345)
Q Consensus 264 ~~~l~~~~~~i~~di~Die-----------gDr~~Gi~TlpV~l 296 (345)
+.--+..+..+.+|+.|+. .|.+.|+.|+|+.+
T Consensus 171 ~g~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gK~Tlpvi~ 214 (291)
T d2q80a1 171 LLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIH 214 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhccchhhccccccchhccCCCcHHHHH
No 8
>d1y29a_ g.3.6.2 (A:) Huwentoxin-X {Spider (Selenocosmia hainana) [TaxId: 209901]}
Probab=9.89 E-value=40 Score=18.49 Aligned_cols=8 Identities=25% Similarity=0.476 Sum_probs=5.9
Q ss_pred cccccccc
Q 019185 55 SFCLTNNK 62 (345)
Q Consensus 55 ~~~~~~~~ 62 (345)
-.|+||||
T Consensus 20 gvcshnkc 27 (28)
T d1y29a_ 20 GVCSHNKC 27 (28)
T ss_dssp SCBSSSCB
T ss_pred eeeccccc
Confidence 35788887
No 9
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=9.79 E-value=26 Score=30.80 Aligned_cols=37 Identities=16% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhCCChHH----------HHhcCCcccchhhChHh
Q 019185 264 FSAIFSIVLSLLKDIPDVEG----------DKKSGIRTLPVILGKER 300 (345)
Q Consensus 264 ~~~l~~~~~~i~~di~Dieg----------Dr~~Gi~TlpV~lG~k~ 300 (345)
+..-+..+..+.+|+.|+.+ |.+.|+.|+|+.+..++
T Consensus 226 ~g~~lGiaFQI~DDilD~~gd~~~~GK~g~Dl~egK~Tlpii~al~~ 272 (348)
T d1fpsa_ 226 ILLEMGEYFQIQDDYLDCFGDPALTGKVGTDIQDNKCSWLVVQCLQR 272 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSSCCSSCSCCCSSCCCCHHHHHHHHT
T ss_pred cccccchHHHHHHHHhhhhcchhccCcccccccCCccHHHHHHHHHh
No 10
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=9.45 E-value=25 Score=30.02 Aligned_cols=35 Identities=26% Similarity=0.596 Sum_probs=26.2
Q ss_pred HHHHHHHHHhhCCChHH----------HHhcCCcccchhhChHhH
Q 019185 267 IFSIVLSLLKDIPDVEG----------DKKSGIRTLPVILGKERV 301 (345)
Q Consensus 267 l~~~~~~i~~di~Dieg----------Dr~~Gi~TlpV~lG~k~a 301 (345)
-+..+..+.+|+.|+.+ |.+.|+.|+|+.++.+++
T Consensus 187 ~lG~afQi~DD~ld~~~~~~~GK~~g~Dl~~gK~T~p~i~al~~~ 231 (280)
T d1v4ea_ 187 TIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPLVTAMEKF 231 (280)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCCTTSSCCCTTTTCCHHHHHHHHHC
T ss_pred HHHHHHHHHHhhccccchhhhcccchhhHhCCCccHHHHHHHHhC
Confidence 34577788999887754 666788999999886544
Done!